# AHRD-Version 2.0

Protein-Accession	Blast-Hit-Accession	AHRD-Quality-Code	Human-Readable-Description	Interpro-ID (Description)	Gene-Ontology-ID (Name)
Niben101Scf04288g01012.1	sp|B1L735|RS7_KORCO	****	30S ribosomal protein S7	IPR000235 (Ribosomal protein S5/S7), IPR023798 (Ribosomal protein S7 domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf07576g04014.1	sp|Q8RX88|FACE1_ARATH	****	CAAX prenyl protease 1 homolog	IPR001915 (Peptidase M48)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0008233 (peptidase activity), GO:0016020 (membrane), GO:0071586 (CAAX-box protein processing)
Niben101Scf01557g06005.1	AT5G26310.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=481	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03659g09010.1	sp|Q9FIX3|PP407_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01615g00001.1	sp|B5FP61|BIOB_SALDC	****	Biotin synthase	IPR002684 (Biotin synthase/Biotin biosynthesis bifunctional protein BioAB), IPR007197 (Radical SAM), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004076 (biotin synthase activity), GO:0009102 (biotin biosynthetic process), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf00069g12009.1	sp|Q6FW88|PMIP_CANGA	****	Mitochondrial intermediate peptidase	IPR001567 (Peptidase M3A/M3B), IPR024077 (Neurolysin/Thimet oligopeptidase, domain 2), IPR024079 (Metallopeptidase, catalytic domain), IPR024080 (Neurolysin/Thimet oligopeptidase, N-terminal)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity)
Niben101Scf04845g00009.1			Unknown protein		
Niben101Scf03171g03022.1	sp|Q9LRR2|TPS17_ARATH	*-**	Terpenoid synthase 17	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf05250g01010.1	sp|A5GFW7|RTF2_PIG	*-*-	Protein RTF2 homolog	IPR006735 (Protein of unknown function DUF602), IPR027799 (Replication termination factor 2, RING-finger)	
Niben101Scf00885g17002.1			Unknown protein		
Niben101Scf01494g05018.1	sp|A5DQS0|DED1_PICGU	*-**	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf04133g02021.1	sp|Q3C1H3|ATPF_NICSY	****	ATP synthase subunit b, chloroplastic	IPR002146 (ATPase, F0 complex, subunit B/B', bacterial/chloroplast)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf06189g02007.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01109g00002.1	sp|Q1RI96|HSPC1_RICBR	--*-	Small heat shock protein C1	IPR008978 (HSP20-like chaperone)	
Niben101Scf38595g00006.1	ref|XP_002509965.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF51352.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00711g02008.1	AT3G10190.1	****	Calcium-binding EF-hand family protein LENGTH=209	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00725g05003.1	sp|O49250|CYCLD_ANTMA	*-*-	Transcription factor CYCLOIDEA	IPR005333 (Transcription factor, TCP)	
Niben101Scf34497g00001.1	AT1G15380.1	*-*-	Lactoylglutathione lyase / glyoxalase I family protein LENGTH=174	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf06249g01004.1	sp|Q5RC80|RBM39_PONAB	--**	RNA-binding protein 39	IPR008111 (RNA-binding motif protein 8), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006396 (RNA processing)
Niben101Scf04902g00008.1	sp|O23225|PUB5_ARATH	***-	U-box domain-containing protein 5	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf04892g00007.1	AT3G17980.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=177	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf02594g03005.1	sp|B9MPC6|RISB_CALBD	****	6,7-dimethyl-8-ribityllumazine synthase	IPR002180 (6,7-dimethyl-8-ribityllumazine synthase)	GO:0009231 (riboflavin biosynthetic process), GO:0009349 (riboflavin synthase complex)
Niben101Scf02145g04003.1	AT4G04330.1	***-	Chaperonin-like RbcX protein LENGTH=174		
Niben101Scf25265g00011.1	AT5G39950.1	***-	thioredoxin 2 LENGTH=133	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf14012g00006.1	sp|A4QL95|RR2_LEPVR	****	30S ribosomal protein S2, chloroplastic	IPR001865 (Ribosomal protein S2), IPR007081 (RNA polymerase Rpb1, domain 5), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003677 (DNA binding), GO:0003735 (structural constituent of ribosome), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006351 (transcription, DNA-templated), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf09116g02017.1	AT1G32580.1	***-	plastid developmental protein DAG, putative LENGTH=229		
Niben101Scf01176g01012.1	sp|Q9NY64|GTR8_HUMAN	*-**	Solute carrier family 2, facilitated glucose transporter member 8	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf07438g04015.1	ref|XP_003592454.1|	*-*-	Blue copper protein [Medicago truncatula]	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf03096g00001.1	AT2G32280.1	***-	Protein of unknown function (DUF1218) LENGTH=163	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf08341g00015.1	sp|O48837|LRKS2_ARATH	--*-	Receptor like protein kinase S.2		
Niben101Scf01188g09003.1	sp|P22128|RAB8_DIPOM	***-	Ras-related protein Rab-8	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf12765g01011.1			Unknown protein		
Niben101Scf06483g00005.1	gb|KEH22373.1|	--*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf05962g04017.1	AT3G42565.1	***-	ECA1 gametogenesis related family protein LENGTH=119	IPR008502 (Prolamin-like domain)	
Niben101Scf14323g01004.1			Unknown protein		
Niben101Scf00416g00004.1	sp|Q9SKB3|PARG1_ARATH	****	Poly(ADP-ribose) glycohydrolase 1	IPR007724 (Poly(ADP-ribose) glycohydrolase)	GO:0004649 (poly(ADP-ribose) glycohydrolase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf20645g00002.1	sp|Q5F629|NUON_NEIG1	--*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf00482g07014.1	AT3G45740.1	***-	hydrolase family protein / HAD-superfamily protein LENGTH=376	IPR023214 (HAD-like domain)	
Niben101Scf00271g04024.1	sp|P51193|PSAF_PORPU	*-**	Photosystem I reaction center subunit III	IPR003666 (Photosystem I PsaF, reaction centre subunit III)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf00163g19009.1	AT2G44500.1	*-*-	O-fucosyltransferase family protein LENGTH=573	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf07687g00006.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf07851g03001.1	sp|Q653H7|ARFR_ORYSJ	****	Auxin response factor 18	IPR010525 (Auxin response factor), IPR011525 (Aux/IAA-ARF-dimerisation), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf00315g00019.1	sp|Q9M157|ETC3_ARATH	--*-	MYB-like transcription factor ETC3	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00311g00001.1	sp|O82528|RL15_PETHY	*-*-	60S ribosomal protein L15	IPR000439 (Ribosomal protein L15e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04813g02023.1	sp|Q9LZX8|BIG2_ARATH	*-*-	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02044g01002.1	gb|AIW09144.1|	***-	progesterone 5-beta-reductase 2 [Catharanthus roseus]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf05800g02018.1	AT5G25380.1	****	cyclin a2;1 LENGTH=437	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf03898g01004.1	gb|KEH43929.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf04193g02013.1			Unknown protein		
Niben101Scf00911g05008.1	ref|XP_002524097.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38307.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00383g02003.1	emb|CDY57650.1|	***-	BnaAnng14910D [Brassica napus]		
Niben101Scf14295g00012.1	sp|Q61550|RAD21_MOUSE	*-*-	Double-strand-break repair protein rad21 homolog	IPR006910 (Rad21/Rec8-like protein, N-terminal), IPR023093 (Rad21/Rec8-like protein, C-terminal)	GO:0000228 (nuclear chromosome), GO:0005515 (protein binding)
Niben101Scf06345g03002.1	sp|P93311|RM02_ARATH	*-*-	60S ribosomal protein L2, mitochondrial		
Niben101Scf07023g03011.1	AT3G56590.2	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=489		
Niben101Scf05146g03008.1	sp|B9SXY8|CSPLE_RICCO	***-	CASP-like protein 4D1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf21813g00002.1	sp|Q57KU6|SYA_SALCH	****	Alanine--tRNA ligase	IPR002318 (Alanine-tRNA ligase, class IIc), IPR009000 (Translation protein, beta-barrel domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004813 (alanine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006419 (alanyl-tRNA aminoacylation)
Niben101Scf00288g03003.1	sp|Q6Z9F4|CIPK6_ORYSJ	****	CBL-interacting protein kinase 6	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00428g05012.1	emb|CDY00343.1|	*-*-	BnaA06g22440D [Brassica napus]		
Niben101Scf18731g00005.1	AT5G43170.1	*-*-	zinc-finger protein 3 LENGTH=193	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf04339g06014.1	sp|Q9LJU7|PPA18_ARATH	****	Purple acid phosphatase 18	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf03045g10009.1	ref|XP_003614922.1|	--*-	TNP1 [Medicago truncatula]		
Niben101Scf00898g01008.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03115g00003.1	emb|CDX86842.1|	***-	BnaA09g22320D [Brassica napus]		
Niben101Scf00426g02011.1	AT5G55370.1	*-*-	MBOAT (membrane bound O-acyl transferase) family protein LENGTH=343		
Niben101Scf02451g10011.1	sp|Q9JME5|AP3B2_MOUSE	*-**	AP-3 complex subunit beta-2	IPR002553 (Clathrin/coatomer adaptor, adaptin-like, N-terminal), IPR016024 (Armadillo-type fold), IPR026739 (AP complex subunit beta)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030123 (AP-3 adaptor complex)
Niben101Scf06224g00008.1	gb|EEZ33517.1|	*-*-	conserved hypothetical protein [Brucella sp. 83/13]		
Niben101Scf05931g00005.1	gb|KEH33280.1|	--**	heavy metal transport/detoxification superfamily protein [Medicago truncatula]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf04328g00047.1	sp|Q9SS98|OLEO5_ARATH	***-	Oleosin 5	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf02714g05004.1	sp|Q6I544|GL52_ORYSJ	***-	Germin-like protein 5-1	IPR014710 (RmlC-like jelly roll fold)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf00439g04006.1			Unknown protein		
Niben101Scf04133g01026.1	sp|O49436|PP327_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Ctg13775g00003.1	ref|NP_001274861.1|	*-**	plasma membrane ATPase 1-like [Solanum tuberosum] emb|CAA54046.1| H(+)-transporting ATPase [Solanum tuberosum]	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0016021 (integral component of membrane)
Niben101Scf00494g05002.1	sp|P17967|PDI_YEAST	*-*-	Protein disulfide-isomerase	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf01797g03026.1	sp|Q680Q4|SIZ1_ARATH	*-*-	E3 SUMO-protein ligase SIZ1		
Niben101Scf04410g04009.1	AT3G03290.1	*-*-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=274	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf02074g05007.1	sp|Q49KZ8|PSAA_EUCGG	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00490g01038.1	sp|Q9LN94|EXPA7_ARATH	***-	Expansin-A7	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf09238g02004.1			Unknown protein		
Niben101Scf14179g00001.1	AT1G22600.1	***-	Late embryogenesis abundant protein (LEA) family protein LENGTH=385	IPR025423 (Domain of unknown function DUF4149)	
Niben101Scf13802g00004.1	AT2G27730.1	***-	copper ion binding LENGTH=113		
Niben101Scf02190g00011.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03998g00012.1	AT1G72510.1	***-	Protein of unknown function (DUF1677) LENGTH=165	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf09951g00002.1	sp|Q8GYY5|RGAP3_ARATH	***-	Rho GTPase-activating protein 3	IPR000095 (CRIB domain), IPR008936 (Rho GTPase activation protein)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf14688g03006.1	AT4G32330.1	*-*-	TPX2 (targeting protein for Xklp2) protein family LENGTH=437	IPR027329 (TPX2, C-terminal domain)	
Niben101Scf05190g03007.1	sp|Q9UL59|ZN214_HUMAN	*-*-	Zinc finger protein 214	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00049g03001.1	AT4G19420.1	***-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf03377g05007.1	sp|B0U3J7|DNAJ_XYLFM	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf01719g04023.1	AT3G05640.1	*-*-	Protein phosphatase 2C family protein LENGTH=358	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf01729g01014.1	emb|CDY68810.1|	***-	BnaCnng60640D [Brassica napus]		
Niben101Scf00326g01026.1	sp|O95069|KCNK2_HUMAN	*-*-	Potassium channel subfamily K member 2	IPR013099 (Two pore domain potassium channel domain)	
Niben101Scf06085g00009.1	sp|E2RQ15|RAB25_CANFA	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00222g01002.1	AT5G07990.1	*-*-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00530g03005.1	sp|Q9FK13|PDV1_ARATH	***-	Plastid division protein PDV1		
Niben101Scf09978g01021.1	sp|Q5ZMW3|API5_CHICK	***-	Apoptosis inhibitor 5	IPR008383 (Apoptosis inhibitory 5)	GO:0005488 (binding)
Niben101Scf05407g03001.1			Unknown protein		
Niben101Scf02145g08002.1	sp|Q9LMN7|WAK5_ARATH	--*-	Wall-associated receptor kinase 5	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf02626g03001.1	sp|Q0E1D7|FLP3_ORYSJ	***-	Flowering-promoting factor 1-like protein 3		
Niben101Scf02210g08006.1	sp|Q9LRV9|PP228_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01917g13028.1	sp|P52894|ALA2_HORVU	*-*-	Alanine aminotransferase 2	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Ctg15465g00004.1	dbj|BAB01956.1|	--*-	GTP-binding protein-like [Arabidopsis thaliana]		
Niben101Scf04134g02004.1	sp|Q3INI6|RL1_NATPD	****	50S ribosomal protein L1	IPR023673 (Ribosomal protein L1, conserved site), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf02340g07012.1	sp|Q9C6W6|TPS29_ARATH	****	Terpenoid synthase 29	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf09025g00001.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10018g00007.1	AT5G22220.2	****	E2F transcription factor 1 LENGTH=469	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR015633 (E2F Family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005667 (transcription factor complex), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg15694g00007.1	AT1G51080.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 101 Blast hits to 98 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 10; Plants - 27; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). LENGTH=285	IPR024530 (Protein of unknown function DUF3820)	
Niben101Scf02497g02011.1	ref|NP_001047545.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf06715g00007.1			Unknown protein	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf05808g01010.1	AT1G03590.1	***-	Protein phosphatase 2C family protein LENGTH=462	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf00941g06017.1	AT1G36320.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=414		
Niben101Scf06901g01010.1	AT3G22960.1	****	Pyruvate kinase family protein LENGTH=596	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf02228g00005.1	emb|CDY04536.1|	***-	BnaA07g13620D [Brassica napus]		
Niben101Scf06996g00005.1	AT5G27000.1	****	kinesin 4 LENGTH=987	IPR001715 (Calponin homology domain), IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00182g02005.1	gb|ABA96148.1|	***-	expressed protein [Oryza sativa Japonica Group] gb|EAY82578.1| hypothetical protein OsJ_35562 [Oryza sativa Japonica Group]		
Niben101Scf08041g01015.1	sp|O04659|PP398_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02631g02003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01859g10010.1	sp|P34422|DPF6_CAEEL	*-**	Dipeptidyl peptidase family member 6	IPR011042 (Six-bladed beta-propeller, TolB-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf07054g01007.1	AT1G64830.1	***-	Eukaryotic aspartyl protease family protein LENGTH=431	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00870g07009.1	sp|P25792|CYSP_SCHMA	*-**	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01304g13012.1	sp|Q9M0E2|RL282_ARATH	***-	60S ribosomal protein L28-2	IPR002672 (Ribosomal protein L28e), IPR029004 (Ribosomal L28e/Mak16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf12076g00002.1	emb|CAM59673.1|	****	parvulin-type peptidyl prolyl cis/trans isomerase [Lotus japonicus]	IPR000297 (Peptidyl-prolyl cis-trans isomerase, PpiC-type), IPR001763 (Rhodanese-like domain)	GO:0016853 (isomerase activity)
Niben101Scf20961g00008.1	sp|Q6YXH5|ZHD1_ORYSJ	***-	Zinc-finger homeodomain protein 1	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf01486g01004.1	sp|Q9D8X2|CC124_MOUSE	*-*-	Coiled-coil domain-containing protein 124	IPR010422 (Protein of unknown function DUF1014)	
Niben101Scf04653g01013.1	sp|Q6K5K2|Y2982_ORYSJ	*-*-	B3 domain-containing protein	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf05689g00007.1	gb|KEH27306.1|	*-*-	superkiller-like protein [Medicago truncatula]		
Niben101Scf04102g02004.1	ref|WP_011932543.1|	*-**	protease [Synechococcus sp. WH 7803] ref|YP_001224354.1| metal-dependent membrane protease [Synechococcus sp. WH 7803] emb|CAK23057.1| Predicted metal-dependent membrane protease [Synechococcus sp. WH 7803]	IPR003675 (CAAX amino terminal protease)	GO:0016020 (membrane)
Niben101Scf05371g05018.1	sp|Q9MAM3|KCS1_ARATH	*-*-	3-ketoacyl-CoA synthase 1	IPR013601 (FAE1/Type III polyketide synthase-like protein)	GO:0006633 (fatty acid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf07166g00014.1	sp|Q0UIU6|EIF3L_PHANO	*-**	Eukaryotic translation initiation factor 3 subunit L	IPR019382 (Translation initiation factor 3 complex subunit L)	GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf13776g00009.1	AT1G66480.1	***-	plastid movement impaired 2 LENGTH=225	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf04081g03005.1	AT5G07900.1	****	Mitochondrial transcription termination factor family protein LENGTH=405	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02237g09008.1	sp|Q8BZ03|KPCD2_MOUSE	*-**	Serine/threonine-protein kinase D2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06348g00042.1	gb|AAP54700.2|	--*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf03515g00050.1			Unknown protein		
Niben101Scf03819g03025.1	gb|KEH21698.1|	*-*-	NLI interacting factor-like phosphatase [Medicago truncatula]	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding)
Niben101Scf04422g07001.1			Unknown protein		
Niben101Scf02001g02005.1	sp|Q2V3N5|FB211_ARATH	--*-	F-box protein		
Niben101Scf07441g03001.1	gb|ABA97690.2|	*-*-	PHD-finger family protein, expressed [Oryza sativa Japonica Group]		
Niben101Scf02909g07004.1	sp|O23051|KAO1_ARATH	***-	Ent-kaurenoic acid oxidase 1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05960g01003.1			Unknown protein		
Niben101Scf05034g05002.1	sp|P0CG15|CTF8_MOUSE	-**-	Chromosome transmission fidelity protein 8 homolog	IPR018607 (Chromosome transmission fidelity protein 8)	
Niben101Scf00154g01001.1	sp|A6TRI3|SPEE_ALKMQ	***-	Polyamine aminopropyl transferase	IPR001045 (Spermidine/spermine synthases family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase), IPR030373 (Polyamine biosynthesis domain, conserved site)	GO:0003824 (catalytic activity)
Niben101Scf08640g00001.1	sp|Q8VYK7|ATG8F_ARATH	***-	Autophagy-related protein 8f	IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain)	
Niben101Scf05776g01033.1			Unknown protein		
Niben101Scf13595g00001.1	sp|Q9CPZ6|ORML3_MOUSE	***-	ORM1-like protein 3	IPR007203 (ORMDL family)	GO:0005789 (endoplasmic reticulum membrane), GO:0016021 (integral component of membrane)
Niben101Scf04829g00007.1			Unknown protein		
Niben101Scf03856g00013.1	sp|Q24JL3|STR2_ARATH	****	Thiosulfate/3-mercaptopyruvate sulfurtransferase 2	IPR001763 (Rhodanese-like domain)	GO:0004792 (thiosulfate sulfurtransferase activity)
Niben101Scf04941g00008.1	sp|P33077|IAA4_ARATH	***-	Auxin-responsive protein IAA4	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf02996g08010.1	sp|C1DRQ3|UBIG_AZOVD	--*-	Ubiquinone biosynthesis O-methyltransferase		
Niben101Scf02359g00008.1	sp|Q0WPZ6|PP158_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR004575 (Cdk-activating kinase assembly factor MAT1/Tfb3), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0007049 (cell cycle)
Niben101Scf20932g00007.1	sp|D4GYV5|SUFS_HALVD	***-	Cysteine desulfurase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01931g01004.1	sp|P29402|CALX1_ARATH	*-*-	Calnexin homolog 1	IPR001580 (Calreticulin/calnexin), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005509 (calcium ion binding), GO:0005783 (endoplasmic reticulum), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf01964g05007.1	AT1G09380.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=374	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01694g02002.1	AT5G58730.1	***-	pfkB-like carbohydrate kinase family protein LENGTH=353	IPR029056 (Ribokinase-like)	
Niben101Scf02336g00014.1	sp|Q7XR52|CYSP1_ORYSJ	--**	Cysteine protease 1	IPR000118 (Granulin), IPR013128 (Peptidase C1A)	GO:0008234 (cysteine-type peptidase activity)
Niben101Scf03309g02006.1	dbj|BAD68701.1|	*-*-	pherophorin-like protein [Oryza sativa Japonica Group]		
Niben101Scf06772g00014.1			Unknown protein		
Niben101Scf09684g00010.1	AT2G42940.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=257	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf03523g00008.1	gb|KEH43211.1|	***-	heparan-alpha-glucosaminide N-acetyltransferase-like protein [Medicago truncatula]		
Niben101Scf00745g00020.1	gb|KEH36097.1|	*-*-	early nodulin 93 [Medicago truncatula]		
Niben101Scf03302g01002.1	sp|P46217|RPOL_SULAC	--**	DNA-directed RNA polymerase subunit L	IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf05082g04025.1			Unknown protein		
Niben101Scf05734g00009.1	AT1G72670.1	***-	IQ-domain 8 LENGTH=414	IPR000048 (IQ motif, EF-hand binding site), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf01393g01005.1	sp|P48724|IF5_PHAVU	****	Eukaryotic translation initiation factor 5	IPR002735 (Translation initiation factor IF2/IF5), IPR016024 (Armadillo-type fold)	GO:0003743 (translation initiation factor activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0006413 (translational initiation)
Niben101Scf05095g01001.1	dbj|BAD94232.1|	*-*-	nodulin-like protein [Arabidopsis thaliana]		
Niben101Scf06280g02017.1	emb|CDY37527.1|	***-	BnaA05g33920D [Brassica napus]	IPR006904 (Protein of unknown function DUF716 (TMEM45))	
Niben101Scf11980g00004.1	AT2G01275.1	*-*-	RING/FYVE/PHD zinc finger superfamily protein LENGTH=259	IPR022143 (Protein of unknown function DUF3675)	
Niben101Scf00149g11001.1	emb|CAE05672.3|	--*-	OSJNBb0033P05.11 [Oryza sativa Japonica Group]		
Niben101Ctg15122g00004.1	ref|NP_001118630.1|	*-*-	high chlorophyll fluorescence 243 [Arabidopsis thaliana] gb|AEE75618.1| high chlorophyll fluorescence 243 [Arabidopsis thaliana]		
Niben101Scf06654g01003.1	gb|KEH39046.1|	***-	wound-responsive family protein [Medicago truncatula]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf00953g00011.1			Unknown protein		
Niben101Scf04328g00005.1	sp|Q9UTK8|GMT_SCHPO	***-	GDP-mannose transporter	IPR004853 (Triose-phosphate transporter domain), IPR029665 (GDP-mannose transporter GONST3, plant)	GO:0005794 (Golgi apparatus), GO:0015780 (nucleotide-sugar transport)
Niben101Scf00338g10014.1	sp|Q91WD4|CG025_MOUSE	*-*-	UPF0415 protein C7orf25 homolog	IPR010733 (Protein of unknown function DUF1308)	
Niben101Scf11895g03016.1	AT4G37200.1	*-*-	Thioredoxin superfamily protein LENGTH=261	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01862g01016.1	sp|Q14746|COG2_HUMAN	****	Conserved oligomeric Golgi complex subunit 2	IPR009316 (COG complex component, COG2), IPR024602 (Conserved oligomeric Golgi complex, subunit 2, N-terminal), IPR024603 (COG complex component, COG2, C-terminal)	GO:0007030 (Golgi organization), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf01010g00008.1	sp|O80522|GDL2_ARATH	*-*-	GDSL esterase/lipase	IPR001810 (F-box domain), IPR006566 (FBD domain), IPR013830 (SGNH hydrolase-type esterase domain)	GO:0005515 (protein binding), GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02270g02023.1	gb|AES66882.2|	***-	amino-terminal region of chorein, A TM vesicle-mediated sorter [Medicago truncatula]	IPR026728 (UHRF1-binding protein 1-like), IPR026854 (Vacuolar protein sorting-associated protein 13A N-terminal domain)	
Niben101Scf18730g00013.1	gb|AID55055.1|	*-*-	disease resistance protein, partial [Solanum habrochaites]	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf04157g01008.1	AT1G73590.1	***-	Auxin efflux carrier family protein LENGTH=622	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf08517g00007.1	ref|WP_031151667.1|	*-**	ATP-binding protein [Streptomyces erythrochromogenes]	IPR000157 (Toll/interleukin-1 receptor homology (TIR) domain), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0043531 (ADP binding)
Niben101Scf29098g00002.1	sp|Q8VZU2|SY132_ARATH	***-	Syntaxin-132	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf01907g00011.1	AT3G57620.1	*-*-	glyoxal oxidase-related protein LENGTH=547	IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf02344g06010.1	gb|AHJ78616.1|	*-*-	tyramine hydroxycinnamoyl transferase [Solanum tuberosum]		
Niben101Scf00372g03011.1	sp|Q0WRX3|SCP40_ARATH	*-**	Serine carboxypeptidase-like 40	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02806g00013.1	sp|O80437|GPAT6_ARATH	***-	Glycerol-3-phosphate 2-O-acyltransferase 6	IPR002123 (Phospholipid/glycerol acyltransferase), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf00246g00010.1	sp|Q9LZJ3|XXT1_ARATH	***-	Xyloglucan 6-xylosyltransferase 1	IPR008630 (Galactosyl transferase)	GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06793g04002.1	emb|CDX97089.1|	***-	BnaC09g45360D [Brassica napus]		
Niben101Scf02078g08040.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02284g00012.1	sp|Q42670|PLSC_COCNU	*-**	1-acyl-sn-glycerol-3-phosphate acyltransferase	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf00539g02005.1	sp|B5Y8S2|GCSH_COPPD	--*-	Glycine cleavage system H protein	IPR002930 (Glycine cleavage system H-protein)	
Niben101Scf12293g02007.1			Unknown protein		
Niben101Scf02334g01024.1	AT5G02820.1	****	Spo11/DNA topoisomerase VI, subunit A protein LENGTH=427	IPR002815 (Spo11/DNA topoisomerase VI subunit A)	GO:0000737 (DNA catabolic process, endonucleolytic), GO:0003677 (DNA binding), GO:0005694 (chromosome)
Niben101Scf09234g00002.1	ref|NP_180763.1|	****	Acyl-CoA N-acyltransferases (NAT) superfamily protein [Arabidopsis thaliana] putative alanine acetyl transferase [Arabidopsis thaliana] gb|AAD15401.1| putative alanine acetyl transferase [Arabidopsis thaliana] gb|ABD60717.1| [Arabidopsis thaliana] gb|AEC08624.1| GCN5-related N-acetyltransferase-like protein [Arabidopsis thaliana]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf03018g10005.1	AT5G50780.1	*-*-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=819		
Niben101Scf02280g06010.1	AT2G39950.1	***-	unknown protein; Has 978 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa - 109; Fungi - 53; Plants - 41; Viruses - 0; Other Eukaryotes - 767 (source: NCBI BLink). LENGTH=636		
Niben101Scf01382g05003.1	emb|CDY49624.1|	*-*-	BnaCnng17760D [Brassica napus]		
Niben101Scf00687g00012.1	sp|Q8S8W6|YCF4_ATRBE	****	Photosystem I assembly protein Ycf4	IPR003359 (Photosystem I Ycf4, assembly)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00033g00007.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf26202g00005.1	AT5G50740.3	****	Heavy metal transport/detoxification superfamily protein LENGTH=290	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf07639g04008.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04941g01011.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR018392 (LysM domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07712g01003.1	sp|Q04716|RT03_PETHY	***-	Ribosomal protein S3, mitochondrial		
Niben101Scf02291g04024.1	AT1G53570.1	*-**	mitogen-activated protein kinase kinase kinase 3 LENGTH=609	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04973g01004.1	AT3G50180.1	*-*-	Plant protein of unknown function (DUF247) LENGTH=588	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf10502g01017.1	AT3G13600.1	***-	calmodulin-binding family protein LENGTH=605		
Niben101Scf01005g01017.1	gb|AES98203.2|	***-	transcription factor [Medicago truncatula]	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05378g02006.1	AT3G02700.1	***-	NC domain-containing protein-related LENGTH=252	IPR000064 (Endopeptidase, NLPC/P60 domain), IPR007053 (LRAT-like domain)	
Niben101Scf07788g04012.1	sp|Q9SMZ2|PP347_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00369g19015.1	sp|Q42920|PME_MEDSA	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01912g01008.1	sp|Q8LGG8|USPAL_ARATH	****	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf26250g00001.1	sp|Q80V62|FACD2_MOUSE	*-*-	Fanconi anemia group D2 protein homolog	IPR016024 (Armadillo-type fold), IPR029448 (Fanconi anaemia protein FANCD2)	GO:0005488 (binding), GO:0006281 (DNA repair)
Niben101Scf27685g00002.1	sp|Q9LQL2|PTR14_ARATH	*-*-	Protein NRT1/ PTR FAMILY 7.3	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf08442g00003.1	AT5G23100.1	***-	Protein of unknown function, DUF617 LENGTH=277	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf07004g02008.1	ref|XP_002514414.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF48010.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00149g03001.1	AT3G51850.1	****	calcium-dependent protein kinase 13 LENGTH=528	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13180g02001.1	sp|Q9C652|RBP1_ARATH	*-**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02262g01011.1	sp|A4VYQ4|RL24_STRS2	***-	50S ribosomal protein L24	IPR003256 (Ribosomal protein L24)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03930g04001.1	emb|CDX97089.1|	***-	BnaC09g45360D [Brassica napus]		
Niben101Ctg12072g00001.1	sp|A4IPB3|IOLC_GEOTN	*-*-	5-dehydro-2-deoxygluconokinase	IPR029056 (Ribokinase-like)	
Niben101Scf05732g04026.1			Unknown protein		
Niben101Scf08357g04022.1	sp|Q42510|GNOM_ARATH	****	ARF guanine-nucleotide exchange factor GNOM	IPR000904 (Sec7 domain), IPR016024 (Armadillo-type fold), IPR023394 (Sec7 domain, alpha orthogonal bundle)	GO:0005086 (ARF guanyl-nucleotide exchange factor activity), GO:0005488 (binding), GO:0032012 (regulation of ARF protein signal transduction)
Niben101Scf05516g02003.1	sp|Q9FNL7|PTR3_ARATH	***-	Protein NRT1/ PTR FAMILY 5.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf16651g00003.1	AT1G18210.1	****	Calcium-binding EF-hand family protein LENGTH=170	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02128g00037.1	sp|Q9LHE7|FYPP3_ARATH	*-*-	Phytochrome-associated serine/threonine-protein phosphatase 3		
Niben101Scf08390g01002.1	ref|XP_007029537.1|	*-*-	TMV resistance protein N, putative [Theobroma cacao] gb|EOY10039.1| TMV resistance protein N, putative [Theobroma cacao]		
Niben101Scf10852g03006.1	sp|Q39766|PGLR_GOSBA	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00472g08007.1	AT4G24320.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=395	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf01895g00022.1	gb|ABN08700.1|	*-*-	Endonuclease/exonuclease/phosphatase [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf02730g00004.1	sp|D7MMW4|CSPLJ_ARALL	*-*-	CASP-like protein 4A2	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf01683g04005.1	sp|Q9FPS0|UBP27_ARATH	*-**	Ubiquitin carboxyl-terminal hydrolase 27	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf00155g04002.1	emb|CDY56020.1|	***-	BnaA08g29280D [Brassica napus]		
Niben101Scf28415g00001.1	sp|Q5ZM74|RN141_CHICK	--*-	RING finger protein 141	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01897g04014.1	AT5G01700.2	***-	Protein phosphatase 2C family protein LENGTH=382	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf02174g01002.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02239g01005.1	sp|Q0WP01|PTR9_ARATH	***-	Protein NRT1/ PTR FAMILY 5.10	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf30446g00001.1	sp|Q6KGX6|RR7_MAGST	***-	30S ribosomal protein S7, chloroplastic	IPR000235 (Ribosomal protein S5/S7), IPR023798 (Ribosomal protein S7 domain)	GO:0006412 (translation)
Niben101Scf02774g01009.1	sp|Q9LE73|NUDT4_ARATH	*-**	Nudix hydrolase 4	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf01037g08005.1	AT4G22120.1	***-	ERD (early-responsive to dehydration stress) family protein LENGTH=771	IPR003864 (Domain of unknown function DUF221), IPR027815 (Domain of unknown function DUF4463)	GO:0016020 (membrane)
Niben101Scf12199g00007.1	AT1G61215.1	***-	bromodomain 4 LENGTH=475	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf00927g08001.1	sp|Q39263|ZFP4_ARATH	***-	Zinc finger protein 4	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf01301g04002.1	sp|Q8LG98|OTUBL_ARATH	***-	Ubiquitin thioesterase otubain-like	IPR019400 (Peptidase C65, otubain)	
Niben101Scf03674g01005.1	sp|Q9LZS7|GDL71_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf03431g00072.1	ref|NP_064026.1|	*-*-	orf145 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] dbj|BAA99337.1| orf145 [Beta vulgaris subsp. vulgaris]		
Niben101Scf12715g00001.1	sp|Q3ST50|RECA_NITWN	*-*-	Protein RecA	IPR013765 (DNA recombination and repair protein RecA)	GO:0003697 (single-stranded DNA binding), GO:0005524 (ATP binding), GO:0006281 (DNA repair), GO:0009432 (SOS response)
Niben101Scf00270g15012.1	AT5G04730.1	*-*-	Ankyrin-repeat containing protein LENGTH=603	IPR026961 (PGG domain)	
Niben101Scf00369g21009.1	sp|P32518|DUT_SOLLC	*-*-	Deoxyuridine 5'-triphosphate nucleotidohydrolase	IPR008180 (Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase), IPR029054 (dUTPase-like)	GO:0016787 (hydrolase activity), GO:0046080 (dUTP metabolic process)
Niben101Scf02280g06011.1	AT2G39980.1	****	HXXXD-type acyl-transferase family protein LENGTH=482	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00006g02011.1	sp|P34102|PK3_DICDI	*-**	Protein kinase 3	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00085g05022.1	sp|Q00536|CDK16_HUMAN	*-**	Cyclin-dependent kinase 16	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08517g00006.1	AT1G55190.1	***-	PRA1 (Prenylated rab acceptor) family protein LENGTH=189	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf03670g03004.1	AT5G49700.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=276	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf00439g10031.1	sp|Q54QC8|SEC1_DICDI	*-**	Protein transport protein sec1	IPR001619 (Sec1-like protein), IPR027482 (Sec1-like, domain 2)	GO:0006904 (vesicle docking involved in exocytosis), GO:0016192 (vesicle-mediated transport)
Niben101Scf21459g00012.1	sp|Q8LGG8|USPAL_ARATH	****	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf08515g00010.1	sp|Q55276|LCYB_SYNE7	***-	Lycopene beta cyclase	IPR008671 (Lycopene cyclase-type, FAD-binding)	GO:0016117 (carotenoid biosynthetic process), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen)
Niben101Scf01576g03016.1	sp|Q2HJ10|ZNT2_MOUSE	*-**	Zinc transporter 2	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf09101g04031.1	sp|Q9LF79|ACA8_ARATH	*-*-	Calcium-transporting ATPase 8, plasma membrane-type	IPR023298 (P-type ATPase,  transmembrane domain)	
Niben101Scf03488g02011.1			Unknown protein		
Niben101Scf02270g02024.1	AT1G51100.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=211		
Niben101Scf00539g01010.1	sp|P92948|CDC5L_ARATH	*-*-	Cell division cycle 5-like protein	IPR017930 (Myb domain)	
Niben101Scf14799g00002.1	sp|Q9D658|TP4A3_MOUSE	*-**	Protein tyrosine phosphatase type IVA 3	IPR000008 (C2 domain), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0005515 (protein binding), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf07606g00005.1	sp|P54654|CAP_DICDI	--*-	Adenylyl cyclase-associated protein	IPR001837 (Adenylate cyclase-associated CAP)	GO:0000902 (cell morphogenesis), GO:0003779 (actin binding), GO:0007010 (cytoskeleton organization)
Niben101Scf12522g01003.1	AT4G17960.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=154		
Niben101Scf00073g04001.1	ref|XP_002522268.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF40126.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07893g00005.1	AT5G09995.2	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=257		
Niben101Scf28259g00005.1	sp|Q5VRJ8|PX115_ORYSJ	****	Peroxisomal membrane protein 11-5	IPR008733 (Peroxisomal biogenesis factor 11)	GO:0005779 (integral component of peroxisomal membrane), GO:0016559 (peroxisome fission)
Niben101Scf05246g01009.1	emb|CDY14247.1|	***-	BnaA08g13780D [Brassica napus]		
Niben101Scf07123g01017.1	gb|AAF73787.1|AF154019_1	--*-	surface protein PspC [Streptococcus pneumoniae]		
Niben101Scf01927g06009.1	sp|P29677|MPPA_SOLTU	****	Mitochondrial-processing peptidase subunit alpha	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0046872 (metal ion binding)
Niben101Scf05610g01004.1	AT2G25737.1	***-	Sulfite exporter TauE/SafE family protein LENGTH=476	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf10889g01014.1	sp|A3KFM7|CHD6_MOUSE	*-**	Chromodomain-helicase-DNA-binding protein 6	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf03735g03014.1	sp|Q9CR11|YETS4_MOUSE	*-*-	YEATS domain-containing protein 4	IPR005033 (YEATS)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05395g04023.1	sp|C5D6U5|MENE_GEOSW	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00223g03020.1	sp|A8FKQ5|EFTU_CAMJ8	--*-	Elongation factor Tu	IPR000795 (Elongation factor, GTP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf00457g06012.1	sp|Q6DRB1|GLE1_DANRE	*-*-	Nucleoporin GLE1	IPR012476 (GLE1-like)	GO:0005643 (nuclear pore), GO:0016973 (poly(A)+ mRNA export from nucleus)
Niben101Scf03614g02002.1	gb|KEH20772.1|	***-	lysine ketoglutarate reductase trans-splicing protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf02740g14003.1	sp|Q9T070|COX6A_ARATH	****	Cytochrome c oxidase subunit 6a, mitochondrial	IPR001349 (Cytochrome c oxidase, subunit VIa)	GO:0004129 (cytochrome-c oxidase activity), GO:0005743 (mitochondrial inner membrane), GO:0005751 (mitochondrial respiratory chain complex IV)
Niben101Scf04592g00020.1	sp|Q942D4|BURP3_ORYSJ	***-	BURP domain-containing protein 3	IPR004873 (BURP domain)	
Niben101Scf01512g06004.1	sp|O23969|SF21_HELAN	***-	Pollen-specific protein SF21	IPR004142 (NDRG), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf13137g00005.1			Unknown protein		
Niben101Scf05147g01001.1	AT3G53520.4	***-	UDP-glucuronic acid decarboxylase 1 LENGTH=458	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf01342g00001.1	gb|AEL30359.1|	--*-	RNA-directed DNA polymerase [Arachis hypogaea]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf05732g02013.1	sp|P49755|TMEDA_HUMAN	***-	Transmembrane emp24 domain-containing protein 10	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf04144g01003.1	sp|Q9SHJ3|CALS7_ARATH	****	Callose synthase 7	IPR003440 (Glycosyl transferase, family 48)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf00247g05013.1	AT1G03470.1	***-	Kinase interacting (KIP1-like) family protein LENGTH=269	IPR011684 (KIP1-like)	
Niben101Scf05653g00005.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf04496g00009.1	AT1G52870.2	****	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein LENGTH=366	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf07162g01002.1	tpg|DAA52266.1|	*-*-	TPA: hypothetical protein ZEAMMB73_414494 [Zea mays]		
Niben101Scf00854g10039.1	sp|Q07060|ATP9_PETSP	****	ATP synthase subunit 9, mitochondrial	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf04650g01005.1			Unknown protein		
Niben101Scf03439g02018.1			Unknown protein		
Niben101Scf19248g00001.1	gb|EZA46847.1|	--*-	Ubiquilin-1 [Cerapachys biroi]	IPR029071 (Ubiquitin-related domain)	
Niben101Scf05391g02018.1	AT1G28510.1	***-	Optic atrophy 3 protein (OPA3) LENGTH=171	IPR010754 (Optic atrophy 3-like)	
Niben101Scf00725g00007.1	sp|Q9Y9I6|SYFA_AERPE	****	Phenylalanine--tRNA ligase alpha subunit	IPR004529 (Phenylalanyl-tRNA synthetase, class IIc, alpha subunit)	GO:0000049 (tRNA binding), GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004826 (phenylalanine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006432 (phenylalanyl-tRNA aminoacylation), GO:0043039 (tRNA aminoacylation)
Niben101Scf05776g01032.1	ref|XP_002535170.1|	*-*-	conserved hypothetical protein [Ricinus communis] ref|XP_002536987.1| conserved hypothetical protein [Ricinus communis] gb|EEF25396.1| conserved hypothetical protein [Ricinus communis] gb|EEF27215.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf17204g01003.1	sp|Q8LDC8|ERF92_ARATH	*-**	Ethylene-responsive transcription factor 1B	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00083g02003.1	AT5G52890.2	*-*-	AT hook motif-containing protein LENGTH=385		
Niben101Scf03772g03005.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02468g13007.1			Unknown protein		
Niben101Scf04223g00022.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf02011g10016.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf00270g07013.1	sp|P62881|GBB5_MOUSE	--**	Guanine nucleotide-binding protein subunit beta-5	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04778g02017.1	sp|O14775|GBB5_HUMAN	****	Guanine nucleotide-binding protein subunit beta-5	IPR016346 (Guanine nucleotide-binding protein, beta subunit)	GO:0005515 (protein binding)
Niben101Scf00640g01008.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf00338g09001.1	ref|WP_028877448.1|	***-	metallophosphoesterase [Teredinibacter turnerae]	IPR029052 (Metallo-dependent phosphatase-like)	
Niben101Scf10148g00009.1	sp|O15245|S22A1_HUMAN	*-*-	Solute carrier family 22 member 1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf09230g04006.1	sp|B9G2A8|BIG_ORYSJ	--*-	Auxin transport protein BIG		
Niben101Scf14642g04009.1	AT3G18660.2	***-	plant glycogenin-like starch initiation protein 1 LENGTH=659	IPR002495 (Glycosyl transferase, family 8), IPR023210 (NADP-dependent oxidoreductase domain), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf03184g07013.1			Unknown protein		
Niben101Scf02503g02020.1	sp|P93568|SSY1_SOLTU	*-*-	Soluble starch synthase 1, chloroplastic/amyloplastic		
Niben101Scf02468g10004.1	AT2G26230.1	****	uricase / urate oxidase / nodulin 35, putative LENGTH=309	IPR002042 (Uricase)	GO:0004846 (urate oxidase activity), GO:0006144 (purine nucleobase metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf17051g00006.1	sp|Q2RAX3|CIPKX_ORYSJ	*-**	CBL-interacting protein kinase 33	IPR000449 (Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal), IPR011009 (Protein kinase-like domain), IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0046983 (protein dimerization activity)
Niben101Scf03486g00002.1	emb|CDY69982.1|	***-	BnaAnng32220D [Brassica napus]	IPR009902 (Protein of unknown function DUF1442), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf04253g00002.1	sp|Q9C9Y4|FB136_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf05166g02006.1	sp|Q9C519|WRKY6_ARATH	*-**	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09189g01011.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf01326g10008.1	sp|Q9LJI9|PP260_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02360g03014.1	AT4G00990.1	*-*-	Transcription factor jumonji (jmjC) domain-containing protein LENGTH=840		
Niben101Scf06653g02032.1	AT1G10470.1	*-*-	response regulator 4 LENGTH=259	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf03550g00044.1	sp|Q5FKV2|MURG_LACAC	****	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	IPR007235 (Glycosyl transferase, family 28, C-terminal)	GO:0005975 (carbohydrate metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups), GO:0030246 (carbohydrate binding), GO:0030259 (lipid glycosylation)
Niben101Scf00355g01010.1			Unknown protein		
Niben101Scf17324g01011.1	AT1G23750.1	***-	Nucleic acid-binding, OB-fold-like protein LENGTH=137	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf01436g04002.1	sp|Q9SKU1|CLC1_ARATH	*-**	Clathrin light chain 1	IPR000996 (Clathrin light chain)	GO:0005198 (structural molecule activity), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030130 (clathrin coat of trans-Golgi network vesicle), GO:0030132 (clathrin coat of coated pit)
Niben101Scf00504g00001.1	AT5G03370.1	*-**	acylphosphatase family LENGTH=171	IPR001792 (Acylphosphatase-like domain), IPR020456 (Acylphosphatase)	GO:0003998 (acylphosphatase activity)
Niben101Scf02518g01003.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC)	GO:0043531 (ADP binding)
Niben101Scf01334g06016.1	sp|O88509|DNM3B_MOUSE	--**	DNA (cytosine-5)-methyltransferase 3B	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006306 (DNA methylation)
Niben101Scf06369g00007.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02108g03016.1	AT1G57540.1	***-	unknown protein; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=103		
Niben101Scf02700g02009.1	AT4G03420.1	***-	Protein of unknown function (DUF789) LENGTH=310	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf06734g02014.1			Unknown protein		
Niben101Scf06662g02001.1	AT4G16650.1	***-	O-fucosyltransferase family protein LENGTH=549	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf08334g01005.1	sp|Q9LUQ6|RL192_ARATH	***-	60S ribosomal protein L19-2	IPR000196 (Ribosomal protein L19/L19e domain), IPR023638 (Ribosomal protein L19/L19e conserved site), IPR027547 (Ribosomal protein L19/L19e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf11215g00026.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf05938g01044.1	sp|P82381|ICI_LINUS	-**-	Proteinase inhibitor	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	
Niben101Scf01212g02028.1	sp|B8HUW5|DTD_CYAP4	***-	D-aminoacyl-tRNA deacylase	IPR003732 (D-tyrosyl-tRNA(Tyr) deacylase), IPR023509 (D-Tyr tRNAtyr deacylase-like domain)	GO:0005737 (cytoplasm), GO:0016788 (hydrolase activity, acting on ester bonds), GO:0019478 (D-amino acid catabolic process)
Niben101Scf02724g05004.1	sp|P27898|MYBP_MAIZE	*-*-	Myb-related protein P	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08250g02009.1	sp|Q5R4K8|ZN615_PONAB	--*-	Zinc finger protein 615	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00017g02004.1	sp|Q9SXV6|CAS1_GLYGL	***-	Cycloartenol synthase	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0003824 (catalytic activity)
Niben101Scf05298g06008.1	sp|Q94CK4|ANXD8_ARATH	***-	Annexin D8	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf00477g00017.1	sp|Q96299|14339_ARATH	***-	14-3-3-like protein GF14 mu	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf02665g09005.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00927g01007.1	sp|Q91060|TBA_NOTVI	*-*-	Tubulin alpha chain	IPR000217 (Tubulin)	GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0007017 (microtubule-based process)
Niben101Scf02307g02016.1	AT1G20760.1	****	Calcium-binding EF hand family protein LENGTH=1019	IPR000261 (EPS15 homology (EH)), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding)
Niben101Scf09612g00001.1			Unknown protein		
Niben101Scf04727g03005.1	AT2G04410.1	***-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=73	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf17164g00027.1	sp|Q9ZR41|GLRX_SOLLC	***-	Glutaredoxin	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00074g02021.1	ref|NP_001058682.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf13218g00010.1	ref|XP_007042434.1|	*-*-	Cold regulated gene 27, putative isoform 1 [Theobroma cacao] gb|EOX98265.1| Cold regulated gene 27, putative isoform 1 [Theobroma cacao]		
Niben101Scf02215g00004.1	ref|XP_003599949.1|	*-**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf01517g06004.1	sp|P46417|GSTX3_SOYBN	--*-	Glutathione S-transferase 3	IPR010987 (Glutathione S-transferase, C-terminal-like)	
Niben101Scf15536g02023.1	sp|Q1BQX0|NADE_BURCA	*-**	NH(3)-dependent NAD(+) synthetase	IPR003694 (NAD(+) synthetase)	GO:0003952 (NAD+ synthase (glutamine-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0006807 (nitrogen compound metabolic process), GO:0009435 (NAD biosynthetic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf10385g00021.1	AT4G20840.1	*-**	FAD-binding Berberine family protein LENGTH=539	IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06155g00001.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf14179g00002.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02222g02007.1	sp|Q9FGV1|ARFH_ARATH	****	Auxin response factor 8	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf04104g06001.1	sp|P86137|NLTP1_ACTDE	****	Non-specific lipid-transfer protein 1	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf03507g05005.1			Unknown protein		
Niben101Scf02427g03003.1	ref|XP_003636809.1|	****	Cytochrome B5 [Medicago truncatula] gb|KEH35789.1| cytochrome b5-like heme/steroid-binding domain protein [Medicago truncatula]	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf06131g00001.1	sp|O64477|Y2913_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR000858 (S-locus glycoprotein)	GO:0048544 (recognition of pollen)
Niben101Scf00412g01010.1	sp|Q6P011|EMC4_DANRE	***-	ER membrane protein complex subunit 4	IPR009445 (Protein of unknown function DUF1077, TMEM85)	
Niben101Scf10006g00009.1	ref|WP_032999563.1|	*-**	HAD family hydrolase [Aggregatibacter actinomycetemcomitans]	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01258g02001.1	sp|Q42896|SCRK2_SOLLC	***-	Fructokinase-2	IPR029056 (Ribokinase-like)	GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf04845g00031.1	sp|Q3SVH3|RPPH_NITWN	***-	RNA pyrophosphohydrolase	IPR015797 (NUDIX hydrolase domain-like), IPR022927 (RNA pyrophosphohydrolase RppH)	GO:0016787 (hydrolase activity)
Niben101Scf04796g00027.1	ref|WP_019474776.1|	-**-	membrane protein [Prochlorococcus sp. W2]	IPR008470 (Uncharacterised protein family Ycf33)	
Niben101Scf03964g04034.1	sp|Q9H553|ALG2_HUMAN	****	Alpha-1,3/1,6-mannosyltransferase ALG2	IPR001296 (Glycosyl transferase, family 1), IPR027054 (Alpha-1,3/1,6-mannosyltransferase ALG2)	GO:0004378 (GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity), GO:0009058 (biosynthetic process), GO:0033164 (glycolipid 6-alpha-mannosyltransferase activity)
Niben101Scf02285g01017.1	AT5G24020.1	****	septum site-determining protein (MIND) LENGTH=326	IPR025501 (ATP binding protein MinD), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000918 (barrier septum site selection), GO:0006200 (ATP catabolic process), GO:0016887 (ATPase activity)
Niben101Scf14771g01015.1	AT5G50400.1	****	purple acid phosphatase 27 LENGTH=611	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf05283g00020.1			Unknown protein		
Niben101Scf01154g19020.1			Unknown protein		
Niben101Scf06186g07003.1	gb|KEH20744.1|	*-*-	myosin heavy chain, putative [Medicago truncatula]		
Niben101Scf01001g07020.1	ref|WP_017309877.1|	***-	epimerase [Fischerella sp. PCC 9339]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf03413g01002.1	gb|KEH18714.1|	***-	rRNA processing/ribosome biogenesis protein [Medicago truncatula]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf05439g04002.1	sp|Q8GXL3|SPL8_ARATH	****	Squamosa promoter-binding-like protein 8	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf01888g06014.1	AT1G44110.1	****	Cyclin A1;1 LENGTH=460	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf11552g04015.1	ref|NP_001031760.1|	*-*-	my [Arabidopsis thaliana]		
Niben101Scf12320g00002.1	sp|Q9JJC8|NIPA2_MOUSE	****	Magnesium transporter NIPA2	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf01849g03029.1	AT5G26780.3	*-**	serine hydroxymethyltransferase 2 LENGTH=533	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf10528g00008.1	sp|Q80VQ0|AL3B1_MOUSE	****	Aldehyde dehydrogenase family 3 member B1	IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf03710g06004.1	AT5G47435.2	****	formyltetrahydrofolate deformylase, putative LENGTH=323	IPR004810 (Formyltetrahydrofolate deformylase)	GO:0006189 ('de novo' IMP biosynthetic process), GO:0008152 (metabolic process), GO:0008864 (formyltetrahydrofolate deformylase activity), GO:0009058 (biosynthetic process), GO:0016597 (amino acid binding), GO:0016742 (hydroxymethyl-, formyl- and related transferase activity)
Niben101Scf00854g02046.1	sp|Q1KXU2|PSBE_HELAN	*-*-	Cytochrome b559 subunit alpha	IPR003372 (Photosystem II PsbL), IPR013082 (Photosystem II cytochrome b559, alpha subunit, lumenal region)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf06345g03003.1	sp|P0C8K6|RM02_ORYSA	--*-	60S ribosomal protein L2, mitochondrial		
Niben101Scf03325g01017.1	AT2G38070.1	***-	Protein of unknown function (DUF740) LENGTH=619	IPR008004 (Uncharacterised protein family UPF0503)	
Niben101Scf10157g01020.1	sp|P38605|CAS1_ARATH	*-*-	Cycloartenol synthase	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	
Niben101Scf03036g00004.1	sp|Q2YDE3|GOT1B_BOVIN	--**	Vesicle transport protein GOT1B	IPR007305 (Vesicle transport protein, Got1/SFT2-like)	GO:0016192 (vesicle-mediated transport)
Niben101Scf03227g03017.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02316g00011.1	ref|XP_007033558.1|	*-*-	NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein, putative [Theobroma cacao] gb|EOY04484.1| NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein, putative [Theobroma cacao]		
Niben101Scf03351g04001.1	sp|Q503V0|CHMP6_DANRE	***-	Charged multivesicular body protein 6	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf06100g02019.1	ref|XP_002518997.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF43530.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf14542g00019.1	pir||S14115	*-*-	NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion		
Niben101Scf01061g08012.1	AT2G19260.1	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=631	IPR011124 (Zinc finger, CW-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04959g00011.1	gb|KEH26500.1|	****	cell cycle regulated microtubule associated protein [Medicago truncatula]	IPR009675 (TPX2), IPR027330 (TPX2 central domain)	GO:0005819 (spindle), GO:0005874 (microtubule), GO:0007067 (mitotic nuclear division)
Niben101Scf02272g04015.1	sp|Q9SAK5|APL_ARATH	--*-	Myb family transcription factor APL	IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	
Niben101Scf00189g06011.1	AT3G26560.1	*-**	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001650 (Helicase, C-terminal), IPR002867 (Zinc finger, C6HC-type), IPR004087 (K Homology domain), IPR007087 (Zinc finger, C2H2), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004386 (helicase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008026 (ATP-dependent helicase activity), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf05963g00030.1	sp|Q9M2C0|VITH4_ARATH	***-	Vacuolar iron transporter homolog 4	IPR008217 (Ccc1 family)	
Niben101Scf07693g00020.1	sp|P28023|DCTN1_RAT	--*-	Dynactin subunit 1		
Niben101Scf05750g03012.1	sp|Q65FT5|MENE_BACLD	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00163g19008.1	sp|Q4V389|PPR55_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00616g00002.1	sp|Q9Z1Z0|USO1_MOUSE	****	General vesicular transport factor p115	IPR016024 (Armadillo-type fold), IPR024095 (Vesicle tethering protein p115-like)	GO:0000139 (Golgi membrane), GO:0005488 (binding), GO:0005737 (cytoplasm), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0016020 (membrane), GO:0048193 (Golgi vesicle transport), GO:0048280 (vesicle fusion with Golgi apparatus)
Niben101Scf05948g07008.1	sp|Q54XK2|SC61A_DICDI	****	Protein transport protein Sec61 subunit alpha	IPR002208 (SecY/SEC61-alpha family), IPR023201 (SecY subunit domain)	GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf03934g01007.1	emb|CDY57158.1|	*-*-	BnaC05g50400D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf10688g00018.1			Unknown protein		
Niben101Scf05846g00012.1	AT4G34770.1	***-	SAUR-like auxin-responsive protein family LENGTH=104	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Ctg12514g00003.1	sp|Q9LQU7|MP704_ARATH	*-*-	Microtubule-associated protein 70-4		
Niben101Scf03918g00007.1	sp|Q7SXR3|MAEA_DANRE	***-	Macrophage erythroblast attacher	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013144 (CRA domain), IPR024964 (CTLH/CRA C-terminal to LisH motif domain), IPR027370 (RING-type zinc-finger, LisH dimerisation motif)	GO:0005515 (protein binding)
Niben101Scf15962g00023.1			Unknown protein		
Niben101Scf00213g02005.1	sp|P0ABI1|CLPA_ECO57	*-**	ATP-dependent Clp protease ATP-binding subunit ClpA	IPR001943 (UVR domain), IPR003959 (ATPase, AAA-type, core), IPR004176 (Clp, N-terminal), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0019538 (protein metabolic process)
Niben101Scf02552g01001.1	AT1G55265.1	***-	Protein of unknown function, DUF538 LENGTH=175	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf00854g09019.1	sp|A9FU01|T23O_SORC5	--*-	Tryptophan 2,3-dioxygenase		
Niben101Scf05434g02022.1	sp|Q9M9Q6|SCP50_ARATH	*-*-	Serine carboxypeptidase-like 50	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf24335g00001.1	sp|A9M3D9|NUOD_NEIM0	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05921g04003.1	sp|Q2K3M6|GLO2_RHIEC	****	Hydroxyacylglutathione hydrolase	IPR017782 (Hydroxyacylglutathione hydrolase)	GO:0004416 (hydroxyacylglutathione hydrolase activity), GO:0006750 (glutathione biosynthetic process), GO:0008270 (zinc ion binding)
Niben101Scf07829g05001.1	AT1G69690.1	*-*-	TCP family transcription factor LENGTH=325	IPR005333 (Transcription factor, TCP)	
Niben101Scf00219g02014.1	sp|A7Y3B4|RPOC2_IPOPU	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf35813g00009.1			Unknown protein		
Niben101Scf01738g06010.1	sp|Q9M390|PTR1_ARATH	***-	Protein NRT1/ PTR FAMILY 8.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf30065g00001.1	sp|Q10FZ7|YAB2_ORYSJ	***-	Protein YABBY 2	IPR006780 (YABBY protein)	
Niben101Scf04457g04015.1	sp|Q766C3|NEP1_NEPGR	--*-	Aspartic proteinase nepenthesin-1	IPR021109 (Aspartic peptidase domain)	
Niben101Scf01752g10016.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02322g02002.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf17044g00007.1			Unknown protein		
Niben101Scf12270g02002.1	emb|CAA80358.1|	***-	beta-fructofuranosidase [Solanum tuberosum]	IPR001362 (Glycoside hydrolase, family 32), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf14708g00024.1			Unknown protein		
Niben101Scf02182g05003.1	AT1G31230.1	****	aspartate kinase-homoserine dehydrogenase i LENGTH=911	IPR011147 (Bifunctional aspartokinase/homoserine dehydrogenase I), IPR016040 (NAD(P)-binding domain)	GO:0004072 (aspartate kinase activity), GO:0004412 (homoserine dehydrogenase activity), GO:0006520 (cellular amino acid metabolic process), GO:0008152 (metabolic process), GO:0008652 (cellular amino acid biosynthetic process), GO:0009067 (aspartate family amino acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0016597 (amino acid binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02207g05012.1	emb|CDX87272.1|	***-	BnaC09g05870D [Brassica napus]		
Niben101Scf07327g03001.1	emb|CDY37082.1|	***-	BnaA04g26600D [Brassica napus]		
Niben101Scf04156g01012.1	sp|Q14657|LAGE3_HUMAN	--*-	EKC/KEOPS complex subunit LAGE3	IPR015419 (CTAG/Pcc1 family)	
Niben101Scf01063g10006.1	sp|Q9C9C9|SOT18_ARATH	*-**	Cytosolic sulfotransferase 18	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf00525g04008.1	sp|Q54JK4|CHMP5_DICDI	***-	Charged multivesicular body protein 5	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf07709g00001.1	AT5G42650.1	***-	allene oxide synthase LENGTH=518	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00885g02003.1	sp|Q93ZQ5|SPXM3_ARATH	*-*-	SPX domain-containing membrane protein	IPR004331 (SPX, N-terminal)	
Niben101Scf12711g00001.1	emb|CDY31001.1|	***-	BnaC04g24230D [Brassica napus]		
Niben101Scf00990g02022.1	emb|CDY11915.1|	*-*-	BnaC03g13410D [Brassica napus]		
Niben101Scf08160g03001.1	AT1G75180.1	***-	Erythronate-4-phosphate dehydrogenase family protein LENGTH=315		
Niben101Scf03934g01006.1	sp|O13813|TOM22_SCHPO	--*-	Mitochondrial import receptor subunit tom22	IPR017411 (Mitochondrial outer membrane translocase complex, subunit Tom22, plant)	
Niben101Scf00898g01009.1	AT1G27150.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=468	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02731g02003.1			Unknown protein		
Niben101Scf00616g00001.1	AT5G41460.1	***-	Protein of unknown function (DUF604) LENGTH=524	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf01012g02004.1	AT1G58410.1	*-*-	Disease resistance protein (CC-NBS-LRR class) family LENGTH=899	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf13644g00016.1	sp|Q8WWY3|PRP31_HUMAN	*-*-	U4/U6 small nuclear ribonucleoprotein Prp31	IPR002687 (Nop domain), IPR027105 (U4/U6 small nuclear ribonucleoprotein Prp31)	GO:0000244 (spliceosomal tri-snRNP complex assembly), GO:0000398 (mRNA splicing, via spliceosome), GO:0046540 (U4/U6 x U5 tri-snRNP complex)
Niben101Scf03929g02003.1	gb|KEH39064.1|	***-	wound-responsive family protein [Medicago truncatula]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf08884g00009.1	sp|Q9ZVF6|PAHX_ARATH	***-	Phytanoyl-CoA dioxygenase	IPR008775 (Phytanoyl-CoA dioxygenase)	
Niben101Scf04959g00010.1	sp|Q5GUR8|RHLB_XANOR	*-**	ATP-dependent RNA helicase RhlB	IPR001650 (Helicase, C-terminal), IPR012562 (GUCT), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus)
Niben101Scf09597g00011.1	sp|P23901|ALDR_HORVU	*-**	Aldose reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06686g00001.1	sp|Q96512|PER9_ARATH	****	Peroxidase 9	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03390g14005.1	sp|Q43111|PME3_PHAVU	*-**	Pectinesterase 3	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf11122g01010.1	sp|B6SGC5|CNR6_MAIZE	***-	Cell number regulator 6	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf04217g00003.1	sp|Q8VZ95|VAP11_ARATH	***-	Vesicle-associated protein 1-1	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf05077g00026.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf03171g03021.1			Unknown protein		
Niben101Scf09248g01010.1	AT2G38410.1	*-*-	ENTH/VHS/GAT family protein LENGTH=671	IPR004152 (GAT domain), IPR008942 (ENTH/VHS)	GO:0005622 (intracellular), GO:0006886 (intracellular protein transport)
Niben101Scf05952g01008.1	sp|Q0TAZ8|MDTL_ECOL5	--*-	Multidrug resistance protein MdtL	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0005886 (plasma membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00539g02004.1	gb|AES59797.2|	*-*-	LA-related protein 6 LA RNA-binding domain protein [Medicago truncatula]	IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf06016g00006.1	AT1G05055.1	***-	general transcription factor II H2 LENGTH=421	IPR002035 (von Willebrand factor, type A)	
Niben101Scf01157g01001.1	AT2G34750.1	*-*-	RNA polymerase I specific transcription initiation factor RRN3 protein LENGTH=613	IPR007991 (RNA polymerase I specific transcription initiation factor RRN3)	
Niben101Scf02562g02008.1	AT2G36770.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03937g02012.1	ref|WP_026720334.1|	***-	fibrillin [Fischerella sp. PCC 9431]	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf01326g07001.1	tpg|DAA43612.1|	*-**	TPA: putative homeobox DNA-binding and leucine zipper domain family protein [Zea mays] gb|AIB05997.1| HB transcription factor, partial [Zea mays]	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00774g00006.1	sp|Q00IB6|CPL4_ARATH	****	RNA polymerase II C-terminal domain phosphatase-like 4	IPR001357 (BRCT domain), IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0004721 (phosphoprotein phosphatase activity), GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf11723g00017.1	sp|Q9Y333|LSM2_HUMAN	***-	U6 snRNA-associated Sm-like protein LSm2	IPR010920 (Like-Sm (LSM) domain), IPR016654 (U6 snRNA-associated Sm-like protein LSm2)	GO:0006397 (mRNA processing)
Niben101Scf05625g00001.1	sp|Q948T6|LGUL_ORYSJ	*-*-	Lactoylglutathione lyase	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf00927g13007.1	AT1G68110.1	*-*-	ENTH/ANTH/VHS superfamily protein LENGTH=379	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf11741g00001.1	AT5G57090.1	***-	Auxin efflux carrier family protein LENGTH=647	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf07438g04016.1	sp|Q9LHA4|VA0D2_ARATH	****	V-type proton ATPase subunit d2	IPR002843 (ATPase, V0 complex,  c/d subunit)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf18745g00020.1	AT1G22990.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=152	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf13802g00003.1			Unknown protein		
Niben101Scf08869g01013.1	AT2G07739.1	*-*-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf28267g00012.1	sp|Q7M1E7|PGLR2_CHAOB	*-**	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00271g04025.1	AT2G38970.1	*-**	Zinc finger (C3HC4-type RING finger) family protein LENGTH=692	IPR002035 (von Willebrand factor, type A), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08972g02004.1	sp|Q5M882|RPP29_RAT	--**	Ribonuclease P protein subunit p29	IPR023534 (Rof/RNase P-like)	GO:0000172 (ribonuclease MRP complex), GO:0003723 (RNA binding), GO:0004540 (ribonuclease activity), GO:0006364 (rRNA processing), GO:0006379 (mRNA cleavage), GO:0008033 (tRNA processing), GO:0030677 (ribonuclease P complex)
Niben101Scf00482g07013.1	AT3G45740.1	*-*-	hydrolase family protein / HAD-superfamily protein LENGTH=376	IPR023214 (HAD-like domain)	
Niben101Scf03998g00013.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf08926g01013.1	AT2G38620.2	****	cyclin-dependent kinase B1;2 LENGTH=311	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00279g07001.1	sp|Q0AVV9|FABZ_SYNWW	***-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	IPR010084 (Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ), IPR029069 (HotDog domain)	GO:0005737 (cytoplasm), GO:0006633 (fatty acid biosynthetic process), GO:0016836 (hydro-lyase activity)
Niben101Scf00577g00006.1	gb|KEH17480.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf09523g04001.1	sp|P15688.2|NU2M_BETVU	*-*-	RecName: Full=NADH-ubiquinone oxidoreductase chain 2; AltName: Full=NADH dehydrogenase subunit 2 (mitochondrion) [Beta vulgaris] emb|CAA34728.1| NADH:ubiquinone reductase subunit 2 [Beta vulgaris subsp. vulgaris]		
Niben101Scf00687g00013.1	sp|Q110B7|RL14_TRIEI	***-	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02044g01001.1			Unknown protein		
Niben101Scf08242g01011.1	sp|B2J058|ATPA_NOSP7	*-**	ATP synthase subunit alpha	IPR004100 (ATPase, F1 complex alpha/beta subunit, N-terminal domain), IPR023366 (ATP synthase subunit alpha-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0015992 (proton transport), GO:0046034 (ATP metabolic process)
Niben101Scf02658g02015.1	sp|Q9HEZ1|XYNA_PHACH	*-*-	Endo-1,4-beta-xylanase A	IPR001000 (Glycoside hydrolase, family 10), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07792g02033.1	sp|Q680Q4|SIZ1_ARATH	***-	E3 SUMO-protein ligase SIZ1	IPR003034 (SAP domain), IPR004181 (Zinc finger, MIZ-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01729g01015.1	sp|P54873|HMCS_ARATH	****	Hydroxymethylglutaryl-CoA synthase	IPR010122 (Hydroxymethylglutaryl-CoA synthase, eukaryotic)	GO:0003824 (catalytic activity), GO:0004421 (hydroxymethylglutaryl-CoA synthase activity), GO:0008152 (metabolic process), GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf04864g03002.1			Unknown protein		
Niben101Scf06345g03001.1			Unknown protein		
Niben101Scf04134g02005.1	sp|P00243|FER_SYNY4	***-	Ferredoxin	IPR010241 (Ferredoxin [2Fe-2S], plant), IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0022900 (electron transport chain), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf11874g01012.1			Unknown protein		
Niben101Scf01339g00001.1	AT2G31510.1	***-	IBR domain-containing protein LENGTH=562	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf13762g01008.1	AT2G42850.1	***-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01732g00007.1	AT1G62810.1	****	Copper amine oxidase family protein LENGTH=712	IPR000269 (Copper amine oxidase), IPR024746 (Glycosyl hydrolase family 100)	GO:0005507 (copper ion binding), GO:0008131 (primary amine oxidase activity), GO:0009308 (amine metabolic process), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity), GO:0048038 (quinone binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00428g05011.1	sp|Q5RE70|INT3_PONAB	*-*-	Integrator complex subunit 3	IPR019333 (Integrator complex subunit 3)	
Niben101Scf01721g08012.1	sp|P0CS05|GMT2_CRYNB	-**-	GDP-mannose transporter 2	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf15425g00002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00416g01013.1	sp|Q8LPL6|AP2A1_ARATH	*-*-	AP-2 complex subunit alpha-1	IPR011001 (Saposin-like), IPR011989 (Armadillo-like helical)	
Niben101Scf01202g00020.1	ref|YP_005090400.1|	***-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf02571g02008.1	sp|Q9SSG3|HIPL1_ARATH	*-*-	HIPL1 protein	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016901 (oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor), GO:0048038 (quinone binding)
Niben101Scf01740g12003.1	sp|Q9AR19|GCN5_ARATH	***-	Histone acetyltransferase GCN5	IPR016181 (Acyl-CoA N-acyltransferase)	
Niben101Scf02398g02001.1	emb|CDY57850.1|	***-	BnaA07g38810D [Brassica napus]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf15131g00002.1	sp|Q9SFC6|GDIR_ARATH	****	Rho GDP-dissociation inhibitor 1	IPR000406 (RHO protein GDP dissociation inhibitor), IPR014756 (Immunoglobulin E-set)	GO:0005094 (Rho GDP-dissociation inhibitor activity), GO:0005737 (cytoplasm)
Niben101Scf00394g00001.1	sp|A1CJT5|IF4A_ASPCL	*-**	ATP-dependent RNA helicase eIF4A	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Ctg11539g00002.1	sp|O48916|FAH1_ARATH	*-*-	Fatty acid 2-hydroxylase 1		
Niben101Scf00773g06007.1	sp|O22874|EXPA8_ARATH	***-	Expansin-A8	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf03115g00002.1	sp|Q5M786|WDR5_XENTR	*-*-	WD repeat-containing protein 5	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf02637g01005.1	sp|A6UWV8|RS5_META3	****	30S ribosomal protein S5	IPR000851 (Ribosomal protein S5), IPR014720 (Double-stranded RNA-binding domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf07250g03025.1	sp|P55034|PSMD4_ARATH	****	26S proteasome non-ATPase regulatory subunit 4 homolog	IPR002035 (von Willebrand factor, type A), IPR003903 (Ubiquitin interacting motif), IPR027040 (Proteasome subunit Rpn10)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0008540 (proteasome regulatory particle, base subcomplex)
Niben101Scf00494g05001.1	sp|Q8VZ14|RMR2_ARATH	*-*-	Receptor homology region, transmembrane domain- and RING domain-containing protein 2	IPR003137 (Protease-associated domain, PA)	
Niben101Scf01727g07008.1	sp|Q70Z18|NAP1B_TOBAC	****	Nucleosome assembly protein 1;2	IPR002164 (Nucleosome assembly protein (NAP))	GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf01797g03025.1	sp|Q6L4L4|SIZ1_ORYSJ	*-*-	E3 SUMO-protein ligase SIZ1	IPR004181 (Zinc finger, MIZ-type)	GO:0008270 (zinc ion binding)
Niben101Scf02340g07013.1			Unknown protein		
Niben101Scf03111g01017.1	sp|Q5HZ36|GAT21_ARATH	*-**	GATA transcription factor 21	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05822g05009.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf04133g01027.1	sp|P56069|METB_HELPY	***-	Cystathionine gamma-synthase	IPR000277 (Cys/Met metabolism, pyridoxal phosphate-dependent enzyme), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf04328g00046.1	sp|A4QLA6|PSAA_LEPVR	****	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf03280g00007.1	emb|CDY16302.1|	*-*-	BnaC01g23370D [Brassica napus]		
Niben101Scf04398g03006.1	sp|Q8GYX0|MOB1_ARATH	*-*-	MOB kinase activator-like 1		
Niben101Scf00682g05018.1	AT3G09925.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=171		
Niben101Scf06447g00014.1	sp|Q5JTN6|WDR38_HUMAN	*-*-	WD repeat-containing protein 38	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02837g08011.1			Unknown protein		
Niben101Scf06186g07005.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004842 (ubiquitin-protein transferase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016567 (protein ubiquitination), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07466g05009.1	sp|Q941Q3|C3H37_ARATH	***-	Zinc finger CCCH domain-containing protein 37	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf05587g00010.1	sp|A7SGF0|MF2NB_NEMVE	--*-	Protein MEF2BNB homolog	IPR019320 (Uncharacterised protein family UPF0402)	
Niben101Scf02160g06059.1	sp|P08742|COX1_MAIZE	****	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023615 (Cytochrome c oxidase, subunit I, copper-binding site), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04939g02002.1			Unknown protein		
Niben101Scf04018g00002.1	AT5G18490.1	***-	Plant protein of unknown function (DUF946) LENGTH=553	IPR009291 (Vacuolar protein sorting-associated protein 62)	
Niben101Scf07488g00028.1	gb|AFC90734.1|	*-**	nucleotide-binding site leucine-rich repeat protein, partial [Rhododendron formosanum]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00220g01008.1	sp|Q75JQ3|PEX2_DICDI	***-	Peroxisome biogenesis factor 2	IPR006845 (Pex, N-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf15972g01020.1	sp|Q94G86|ALL9_OLEEU	*-*-	Glucan endo-1,3-beta-D-glucosidase	IPR012946 (X8 domain)	
Niben101Scf06933g02020.1			Unknown protein	IPR008889 (VQ)	
Niben101Scf10043g00022.1	AT1G60140.1	****	trehalose phosphate synthase LENGTH=861	IPR001830 (Glycosyl transferase, family 20), IPR003337 (Trehalose-phosphatase), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process)
Niben101Scf11182g01002.1	emb|CDX81514.1|	***-	BnaC02g18180D [Brassica napus]		
Niben101Scf14012g00005.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf13646g00002.1			Unknown protein		
Niben101Scf02237g09009.1	ref|XP_007042830.1|	*-*-	Executer 1 isoform 4 [Theobroma cacao] gb|EOX98661.1| Executer 1 isoform 4 [Theobroma cacao]		
Niben101Scf01964g08026.1	sp|Q947G8|GOLS1_SOLLC	***-	Galactinol synthase 1	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf02346g05006.1	emb|CDY01585.1|	***-	BnaC07g35750D [Brassica napus]		
Niben101Scf03898g01005.1	gb|ACG47065.1|	****	ATP/GTP-binding protein [Zea mays]	IPR005177 (Bifunctional kinase-pyrophosphorylase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005524 (ATP binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05962g04016.1			Unknown protein		
Niben101Scf01964g05008.1	sp|Q8GXB4|WTR2_ARATH	***-	WAT1-related protein	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01002g10009.1	sp|B7MCM0|HCHA_ECO45	--*-	Molecular chaperone Hsp31 and glyoxalase 3	IPR006287 (DJ-1), IPR029062 (Class I glutamine amidotransferase-like)	
Niben101Scf01013g04009.1	AT3G23270.1	***-	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain LENGTH=1045	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR011993 (Pleckstrin homology-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013591 (Brevis radix (BRX) domain), IPR027988 (Transcription factor  BREVIS RADIX, N-terminal domain)	GO:0046872 (metal ion binding)
Niben101Scf04813g02024.1	sp|O76021|RL1D1_HUMAN	*-*-	Ribosomal L1 domain-containing protein 1	IPR016094 (Ribosomal protein L1, 2-layer alpha/beta-sandwich), IPR016095 (Ribosomal protein L1, 3-layer alpha/beta-sandwich), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding)
Niben101Scf05329g01014.1	sp|Q9LYM3|LOR14_ARATH	***-	Protein LURP-one-related 14	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf10018g00006.1	ref|NP_001066202.1|	*-*-	product [Oryza sativa Japonica Group]	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf12932g00002.1	sp|Q9FFR9|CHX18_ARATH	****	Cation/H(+) antiporter 18	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf13005g03025.1	sp|Q83I55|RL17_TROW8	--*-	50S ribosomal protein L17		
Niben101Scf00253g03001.1	AT5G54510.1	***-	Auxin-responsive GH3 family protein LENGTH=612	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf17831g01009.1	sp|B8CRG0|SYC_SHEPW	****	Cysteine--tRNA ligase	IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding), IPR024909 (Cysteinyl-tRNA synthetase/mycothiol ligase)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004817 (cysteine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006423 (cysteinyl-tRNA aminoacylation)
Niben101Scf01927g01013.1	sp|O22704|CYP5F_ARATH	***-	Cytochrome B5-like protein	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf06628g00013.1			Unknown protein		
Niben101Scf05278g04003.1	sp|A5YVF1|SGS3_SOLLC	***-	Protein SUPPRESSOR OF GENE SILENCING 3		
Niben101Scf00271g05009.1	emb|CDY08223.1|	*-*-	BnaA05g13960D [Brassica napus]		
Niben101Scf01051g10025.1	sp|A1SLJ4|PNP_NOCSJ	--*-	Polyribonucleotide nucleotidyltransferase	IPR015847 (Exoribonuclease, phosphorolytic domain 2), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027408 (PNPase/RNase PH domain)	
Niben101Scf00504g00003.1	AT5G03370.1	****	acylphosphatase family LENGTH=171	IPR001792 (Acylphosphatase-like domain), IPR020456 (Acylphosphatase)	GO:0003998 (acylphosphatase activity)
Niben101Ctg15694g00006.1	gb|ACE97392.1|	*-*-	esterase/lipase/thioesterase [Populus tremula]		
Niben101Scf06715g00006.1	sp|Q69ZM6|STK36_MOUSE	*-**	Serine/threonine-protein kinase 36	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00337g01007.1	AT1G69030.1	***-	BSD domain-containing protein LENGTH=317	IPR005607 (BSD)	
Niben101Scf02016g00005.1	sp|Q8N9V6|ANR53_HUMAN	*-*-	Ankyrin repeat domain-containing protein 53	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf02397g00005.1	ref|WP_017498721.1|	--*-	sugar hydrolase [Flavobacterium sp. WG21]		
Niben101Scf02842g00004.1	AT3G24040.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=417	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf04296g00012.1	sp|Q8GY42|NAC25_ARATH	--**	NAC transcription factor 25	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04940g01021.1	AT3G21790.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=495	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01859g10011.1	sp|Q6IP09|PABPB_XENLA	*-**	Polyadenylate-binding protein 1-B	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf09472g02016.1			Unknown protein		
Niben101Scf02073g08015.1	sp|P69103|GBLP_TRYBB	*-**	Guanine nucleotide-binding protein subunit beta-like protein	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf08799g00002.1	AT4G13050.1	***-	Acyl-ACP thioesterase LENGTH=367	IPR002864 (Acyl-ACP thioesterase), IPR029069 (HotDog domain)	GO:0006633 (fatty acid biosynthetic process), GO:0016790 (thiolester hydrolase activity)
Niben101Scf03978g02001.1	sp|Q84MC7|PYL9_ARATH	*-*-	Abscisic acid receptor PYL9	IPR023393 (START-like domain)	
Niben101Scf06614g02008.1	AT5G05830.1	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=204	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf18730g00014.1	AT5G49890.1	****	chloride channel C LENGTH=779	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf24155g00007.1	AT1G23300.1	*-*-	MATE efflux family protein LENGTH=515	IPR001991 (Sodium:dicarboxylate symporter), IPR002528 (Multi antimicrobial extrusion protein)	GO:0006835 (dicarboxylic acid transport), GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0017153 (sodium:dicarboxylate symporter activity), GO:0055085 (transmembrane transport)
Niben101Scf05044g02012.1	sp|Q9SV13|SUT31_ARATH	****	Sulfate transporter 3.1	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport), GO:1902358 (sulfate transmembrane transport)
Niben101Scf00149g11002.1	gb|AES92348.2|	*-*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf11364g00002.1	sp|Q7Z6J9|SEN54_HUMAN	*-*-	tRNA-splicing endonuclease subunit Sen54	IPR024336 (tRNA-splicing endonuclease, subunit Sen54, N-terminal), IPR024337 (tRNA-splicing endonuclease, subunit Sen54)	
Niben101Scf21647g01003.1	sp|Q1JDX0|VATA_STRPB	****	V-type ATP synthase alpha chain	IPR005725 (ATPase, V1 complex, subunit A), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0015992 (proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0033180 (proton-transporting V-type ATPase, V1 domain), GO:0046034 (ATP metabolic process), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf01519g03009.1	sp|P46291|RL38_SOLLC	***-	60S ribosomal protein L38	IPR002675 (Ribosomal protein L38e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05371g05019.1	sp|O22046|CHSE_IPONI	***-	Chalcone synthase E	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04554g06017.1	sp|Q9M088|E135_ARATH	***-	Glucan endo-1,3-beta-glucosidase 5	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05689g00008.1	ref|XP_002510763.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52950.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00503g02009.1	sp|Q9SY02|PP301_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00087g05001.1	sp|Q9FPS4|UBP23_ARATH	*-**	Ubiquitin carboxyl-terminal hydrolase 23	IPR002893 (Zinc finger, MYND-type), IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf03500g01002.1	sp|O04197|COI1_ARATH	***-	Coronatine-insensitive protein 1	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf04943g01010.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00705g01010.1	sp|Q8SQM0|RFC4_ENCCU	*-**	Replication factor C subunit 4	IPR012763 (DNA polymerase III, subunit gamma/ tau), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0005524 (ATP binding), GO:0006260 (DNA replication), GO:0009360 (DNA polymerase III complex)
Niben101Scf02911g04010.1	AT4G12570.1	****	ubiquitin protein ligase 5 LENGTH=873	IPR000569 (HECT), IPR019956 (Ubiquitin), IPR029071 (Ubiquitin-related domain)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding)
Niben101Scf04077g07004.1	sp|P24922|IF5A2_NICPL	****	Eukaryotic translation initiation factor 5A-2	IPR001884 (Translation elongation factor IF5A)	GO:0003723 (RNA binding), GO:0003746 (translation elongation factor activity), GO:0006452 (translational frameshifting), GO:0043022 (ribosome binding), GO:0045901 (positive regulation of translational elongation), GO:0045905 (positive regulation of translational termination)
Niben101Scf01414g02024.1	sp|Q8P137|KPRS2_STRP8	***-	Ribose-phosphate pyrophosphokinase 2	IPR029057 (Phosphoribosyltransferase-like), IPR029099 (Ribose-phosphate pyrophosphokinase, N-terminal domain)	GO:0009116 (nucleoside metabolic process)
Niben101Scf01604g01019.1	AT4G01070.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05034g05001.1	emb|CDX74341.1|	***-	BnaA03g27060D [Brassica napus]		
Niben101Scf01934g03002.1	AT3G36659.1	*-**	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=264	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf20932g00006.1	AT5G64600.1	***-	O-fucosyltransferase family protein LENGTH=522	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf17051g00007.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07833g00010.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02359g00009.1	sp|P55748|CBP22_HORVU	****	Serine carboxypeptidase II-2	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01911g15005.1	emb|CDX77148.1|	*-*-	BnaC04g39430D [Brassica napus]		
Niben101Scf10502g01016.1	sp|Q9CR60|GOT1B_MOUSE	****	Vesicle transport protein GOT1B	IPR007305 (Vesicle transport protein, Got1/SFT2-like)	GO:0016192 (vesicle-mediated transport)
Niben101Scf00894g01001.1	sp|Q5HHX4|NORA_STAAC	--*-	Quinolone resistance protein NorA	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02996g08011.1			Unknown protein		
Niben101Scf04941g01010.1	sp|O22768|UNE12_ARATH	***-	Transcription factor UNE12	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04627g02017.1	sp|Q2TAW0|CNDG2_XENLA	*-*-	Condensin-2 complex subunit G2	IPR016024 (Armadillo-type fold), IPR024741 (Condensin-2 complex subunit G2)	GO:0005488 (binding), GO:0005634 (nucleus)
Niben101Scf03407g02009.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02085g15012.1	ref|WP_019483513.1|	*-**	acyl-CoA dehydrogenase [Arthrobacter sp. TB 23]	IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal)	GO:0003995 (acyl-CoA dehydrogenase activity), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03810g10001.1	sp|E1BK52|STK10_BOVIN	*-**	Serine/threonine-protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03309g02007.1	sp|Q9LQ16|PPR94_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02336g00013.1	sp|P25802|CYSP1_OSTOS	--**	Cathepsin B-like cysteine proteinase 1	IPR013128 (Peptidase C1A)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf02059g01009.1	AT2G33700.1	***-	Protein phosphatase 2C family protein LENGTH=380	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf10335g00002.1	sp|Q9LIG2|RLK6_ARATH	*-*-	Receptor-like protein kinase	IPR024788 (Malectin-like carbohydrate-binding domain)	
Niben101Scf04328g00004.1	sp|Q9S845|GONS3_ARATH	*-*-	GDP-mannose transporter GONST3	IPR029665 (GDP-mannose transporter GONST3, plant)	GO:0005794 (Golgi apparatus), GO:0015780 (nucleotide-sugar transport)
Niben101Scf05080g01012.1	sp|Q55B11|VTA1_DICDI	*-*-	Vacuolar protein sorting-associated protein VTA1 homolog	IPR023175 (Vacuolar protein sorting-associate protein Vta1/Callose synthase, N-terminal domain)	
Niben101Scf12726g00007.1	AT2G44745.1	*-**	WRKY family transcription factor LENGTH=218	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02581g04011.1	sp|Q68RY4|RR18_PANGI	--*-	30S ribosomal protein S18, chloroplastic	IPR001648 (Ribosomal protein S18)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01494g05017.1	gb|KEO80265.1|	*-*-	thiol-disulfide oxidoreductase DCC [Paenibacillus polymyxa]	IPR007263 (Protein of unknown function DUF393)	
Niben101Scf01983g03001.1	sp|Q9DBL7|COASY_MOUSE	--*-	Bifunctional coenzyme A synthase		
Niben101Scf07893g00007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04384g02010.1	sp|Q06215|PPO_VICFA	*-**	Polyphenol oxidase A1, chloroplastic	IPR022740 (Polyphenol oxidase, C-terminal)	GO:0004097 (catechol oxidase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01070g01007.1	AT1G76950.1	*-*-	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain LENGTH=1103	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf05697g03010.1	emb|CAA53243.1|	***-	chloroplast outer envelope 24 kD protein (omp24) [Spinacia oleracea]		
Niben101Scf12372g02004.1	sp|Q9MA44|SIPL5_ARATH	****	Signal peptide peptidase-like 5	IPR003137 (Protease-associated domain, PA), IPR006639 (Presenilin/signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf01931g07009.1	AT2G46070.1	****	mitogen-activated protein kinase 12 LENGTH=372	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07727g01004.1	sp|A4YHV0|RPOL_METS5	****	DNA-directed RNA polymerase subunit L	IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf15995g03004.1	AT1G77120.1	***-	alcohol dehydrogenase 1 LENGTH=379	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05920g02002.1	ref|XP_003602715.1|	--**	Protein SUPPRESSOR OF GENE SILENCING-like protein [Medicago truncatula] gb|AES72966.1| suppressor OF protein silencing protein [Medicago truncatula]	IPR005380 (XS domain)	GO:0031047 (gene silencing by RNA)
Niben101Scf01240g05006.1	sp|Q9ZUM0|C3H17_ARATH	*-*-	Zinc finger CCCH domain-containing protein 17	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf01702g01007.1	sp|Q9FHW9|GDL90_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00069g12008.1			Unknown protein		
Niben101Scf02946g01010.1	sp|Q9SFC6|GDIR_ARATH	*-**	Rho GDP-dissociation inhibitor 1	IPR000406 (RHO protein GDP dissociation inhibitor), IPR014756 (Immunoglobulin E-set)	GO:0005094 (Rho GDP-dissociation inhibitor activity), GO:0005737 (cytoplasm)
Niben101Scf01970g06006.1	sp|Q9SB61|ZHD2_ARATH	***-	Zinc-finger homeodomain protein 2	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf01397g00020.1	sp|Q06967|14336_ORYSJ	***-	14-3-3-like protein GF14-F	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf03647g01013.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Ctg14534g00001.1			Unknown protein		
Niben101Scf02078g08041.1	sp|Q9PKX7|6PGD_CHLMU	--**	6-phosphogluconate dehydrogenase, decarboxylating	IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0006573 (valine metabolic process), GO:0008442 (3-hydroxyisobutyrate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05880g03013.1	AT5G23720.1	*-*-	dual specificity protein phosphatase family protein LENGTH=929		
Niben101Scf20961g00007.1	gb|AFW56318.1|	***-	ABA-responsive protein [Zea mays]	IPR004182 (GRAM domain)	
Niben101Scf06483g00004.1	AT1G30760.1	*-**	FAD-binding Berberine family protein LENGTH=534	IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01418g00022.1	sp|O94737|MAPK1_PNECA	--**	Mitogen-activated protein kinase 1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00372g03012.1	sp|Q1PF08|SCP22_ARATH	*-*-	Serine carboxypeptidase-like 22	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04021g07002.1	sp|Q09YI1|CTTB2_SHEEP	--*-	Cortactin-binding protein 2		
Niben101Scf04133g02022.1	sp|Q3C1G8|RPOC1_NICSY	*-*-	DNA-directed RNA polymerase subunit beta'		
Niben101Scf24326g00009.1	AT3G51280.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=430	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02334g01023.1	sp|Q5U550|DDA1_XENLA	-**-	DET1- and DDB1-associated protein 1	IPR018276 (Ubiquitin ligase, Det1/DDB1-complexing)	
Niben101Scf00461g03005.1	sp|Q9FNE1|CRK42_ARATH	--*-	Cysteine-rich receptor-like protein kinase 42		
Niben101Scf10846g00017.1	AT1G65790.1	*-**	receptor kinase 1 LENGTH=843	IPR011009 (Protein kinase-like domain), IPR021820 (S-locus receptor kinase, C-terminal)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03819g03024.1	sp|A0JM64|K0907_XENTR	*-*-	UPF0469 protein KIAA0907 homolog	IPR004088 (K Homology domain, type 1)	GO:0003723 (RNA binding)
Niben101Scf01676g00009.1	sp|Q9FJZ9|PER72_ARATH	****	Peroxidase 72	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01678g04011.1	ref|XP_007040332.1|	*-*-	Nuclear transport factor 2 family protein, putative [Theobroma cacao] gb|EOY24833.1| Nuclear transport factor 2 family protein, putative [Theobroma cacao]		
Niben101Scf01494g10006.1	sp|Q5BJU3|SAM14_RAT	--*-	Sterile alpha motif domain-containing protein 14	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf06332g03011.1	sp|A2BMB2|RL2_HYPBU	***-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00226g01009.1	gb|KEH36784.1|	*-*-	xyloglucanase-specific endoglucanase inhibitor protein [Medicago truncatula]	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01051g02013.1	AT5G47470.1	****	Nodulin MtN21 /EamA-like transporter family protein LENGTH=364	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf02819g03010.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04314g02018.1	gb|ABB00206.1|	--*-	disease resistance protein [Arabidopsis thaliana]		
Niben101Scf08365g01005.1	sp|Q564K3|CND2_ARATH	*-**	Condensin complex subunit 2	IPR022816 (Condensin complex subunit 2/barren)	GO:0000796 (condensin complex), GO:0007076 (mitotic chromosome condensation)
Niben101Ctg11562g00002.1	ref|XP_002509965.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF51352.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05755g02008.1	sp|Q4V8C4|WDR5B_RAT	*-*-	WD repeat-containing protein 5B	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR027728 (Topless family)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06081g03003.1			Unknown protein		
Niben101Scf02142g02007.1	sp|Q32P84|TM258_BOVIN	--*-	Transmembrane protein 258	IPR007915 (Uncharacterised protein family UPF0197)	
Niben101Scf08643g03021.1	gb|KEH34780.1|	*-*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf04172g01004.1	AT4G28760.1	***-	Protein of unknown function (DUF3741) LENGTH=924	IPR022212 (Protein of unknown function DUF3741), IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf16898g00006.1	sp|Q8LET2|NUD11_ARATH	****	Nudix hydrolase 11	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf09696g00033.1	sp|Q9MFN9|CYB_COLHO	***-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal), IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf05614g02002.1	sp|Q09YM8|CTTB2_RABIT	--**	Cortactin-binding protein 2	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf12522g01002.1	sp|O82302|P2C29_ARATH	***-	Protein phosphatase 2C 29	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf04958g00013.1	sp|Q9ZUT8|AB33G_ARATH	***-	ABC transporter G family member 33	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf09603g00007.1	AT3G05640.1	***-	Protein phosphatase 2C family protein LENGTH=358	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf05407g01011.1	sp|Q9KTV1|DADA_VIBCH	***-	D-amino acid dehydrogenase	IPR006076 (FAD dependent oxidoreductase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10919g01019.1			Unknown protein		
Niben101Scf05804g00001.1	sp|Q7T322|NAA35_DANRE	***-	N-alpha-acetyltransferase 35, NatC auxiliary subunit	IPR007244 (NatC N(alpha)-terminal acetyltransferase, Mak10 subunit)	
Niben101Scf12745g00002.1			Unknown protein		
Niben101Scf00557g01004.1	ref|WP_025910290.1|	--*-	4-alpha-glucanotransferase [Enterobacter sp. 5-4]		
Niben101Scf13141g01003.1			Unknown protein		
Niben101Scf00085g05023.1	sp|Q9LU15|AHP4_ARATH	***-	Histidine-containing phosphotransfer protein 4	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity)
Niben101Ctg15705g00004.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg15035g00004.1	sp|B9SXY8|CSPLE_RICCO	***-	CASP-like protein 4D1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf05540g00019.1	sp|O80919|TBL34_ARATH	***-	Protein trichome birefringence-like 34	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf05732g04025.1	sp|Q9SIZ6|GDL47_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf03018g10006.1	AT4G24970.1	*-*-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=707	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf01350g05014.1	sp|Q9LJK3|LAG12_ARATH	***-	LAG1 longevity assurance homolog 2	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf06467g04007.1	sp|P13586|ATC1_YEAST	****	Calcium-transporting ATPase 1	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain), IPR024750 (Calcium-transporting P-type ATPase, N-terminal autoinhibitory domain)	GO:0000166 (nucleotide binding), GO:0005388 (calcium-transporting ATPase activity), GO:0005516 (calmodulin binding), GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding), GO:0070588 (calcium ion transmembrane transport)
Niben101Scf03520g01001.1	gb|KEH34860.1|	****	electron carrier/protein disulfide oxidoreductase [Medicago truncatula]	IPR006869 (Domain of unknown function DUF547), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01278g11001.1	sp|Q9SK53|COL3_ARATH	*-*-	Zinc finger protein CONSTANS-LIKE 3	IPR010402 (CCT domain)	GO:0005515 (protein binding)
Niben101Scf01907g00012.1	AT3G57620.1	*-*-	glyoxal oxidase-related protein LENGTH=547	IPR014756 (Immunoglobulin E-set)	
Niben101Scf06942g02015.1	sp|P03772|PP_LAMBD	--*-	Serine/threonine-protein phosphatase	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf00247g05014.1	ref|XP_002520680.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF41642.1| conserved hypothetical protein [Ricinus communis]	IPR013730 (rRNA processing)	
Niben101Scf00117g02010.1			Unknown protein		
Niben101Scf01897g04013.1	sp|A5FZU6|RL15_ACICJ	--**	50S ribosomal protein L15	IPR005749 (Ribosomal protein L15, bacterial-type), IPR014347 (Tautomerase/MIF superfamily), IPR021131 (Ribosomal protein L18e/L15P)	GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf05063g03009.1	sp|Q940X7|RBX1A_ARATH	*-*-	RING-box protein 1a	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf11564g01005.1	gb|ABY88541.1|	*-*-	NHL1, partial [Arabidopsis thaliana]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf01687g04016.1	AT1G18160.1	*-**	Protein kinase superfamily protein LENGTH=992	IPR000270 (Phox/Bem1p), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06193g00005.1	AT3G49950.1	***-	GRAS family transcription factor LENGTH=410	IPR005202 (Transcription factor GRAS)	
Niben101Scf01237g04008.1	ref|XP_007008867.1|	*-*-	Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 3 [Theobroma cacao] gb|EOY17677.1| Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 3 [Theobroma cacao]		
Niben101Scf04382g00016.1	sp|Q9FFY9|TRP4_ARATH	****	Telomere repeat-binding protein 4	IPR009057 (Homeodomain-like), IPR029071 (Ubiquitin-related domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf05535g03001.1	sp|Q9FYC2|PAO_ARATH	****	Pheophorbide a oxygenase, chloroplastic	IPR013626 (Pheophorbide a oxygenase), IPR017941 (Rieske [2Fe-2S] iron-sulphur domain)	GO:0010277 (chlorophyllide a oxygenase [overall] activity), GO:0016491 (oxidoreductase activity), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01787g00037.1	sp|B0SZ35|NUON_CAUSK	*-*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf05004g04016.1	AT4G31540.1	****	exocyst subunit exo70 family protein G1 LENGTH=687	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf02407g03014.1	sp|Q6NKX3|FDL14_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR006566 (FBD domain)	
Niben101Scf08635g01005.1	AT3G62260.2	*-*-	Protein phosphatase 2C family protein LENGTH=384	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf04053g02013.1	emb|CDX81297.1|	***-	BnaC09g07080D [Brassica napus]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf02316g03019.1	AT1G48480.1	*-**	receptor-like kinase 1 LENGTH=655	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04556g04019.1	sp|Q6PKH6|DR4L2_HUMAN	*-**	Dehydrogenase/reductase SDR family member 4-like 2	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01326g05001.1	emb|CDX85560.1|	-**-	BnaA02g02530D [Brassica napus]		
Niben101Scf00006g02010.1	AT1G70000.1	*-*-	myb-like transcription factor family protein LENGTH=261	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf12862g00003.1	sp|C9JPN9|UL17C_HUMAN	*-**	Ubiquitin carboxyl-terminal hydrolase 17-like protein 12	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf04271g03003.1	sp|Q570C0|TIR1_ARATH	***-	Protein TRANSPORT INHIBITOR RESPONSE 1	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Ctg11462g00001.1			Unknown protein		
Niben101Scf05387g08009.1	sp|Q10CT5|NTM1_ORYSJ	*-**	Alpha N-terminal protein methyltransferase 1	IPR008576 (Protein of unknown function DUF858, methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf04745g00002.1	ref|XP_007021555.1|	--*-	Rib L11 methyltransferase-related, putative [Theobroma cacao]		
Niben101Scf09355g00003.1			Unknown protein		
Niben101Scf00152g01001.1	gb|KEH20808.1|	***-	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]		
Niben101Scf20669g01001.1	sp|A6QLW8|S22A7_BOVIN	***-	Solute carrier family 22 member 7	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04205g01011.1	sp|Q8VYI9|NLTL5_ARATH	--*-	Non-specific lipid-transfer protein-like protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf01948g01018.1	sp|Q5RBU1|CENPX_PONAB	--*-	Centromere protein X	IPR018552 (Centromere protein X)	GO:0006281 (DNA repair), GO:0051382 (kinetochore assembly)
Niben101Scf01742g03004.1			Unknown protein		
Niben101Ctg12629g00003.1	sp|Q03194|PMA4_NICPL	*-**	Plasma membrane ATPase 4	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf07606g00004.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02953g00007.1	AT4G22240.1	***-	Plastid-lipid associated protein PAP / fibrillin family protein LENGTH=310	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf05917g00010.1			Unknown protein		
Niben101Scf00679g05014.1			Unknown protein		
Niben101Scf12547g02005.1	sp|Q9LQL2|PTR14_ARATH	***-	Protein NRT1/ PTR FAMILY 7.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf04294g05023.1	sp|Q9SII7|PP159_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002495 (Glycosyl transferase, family 8), IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005515 (protein binding), GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf10368g00002.1	sp|Q9ASZ8|PPR37_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05931g03007.1	ref|XP_007039137.1|	*-*-	U-box domain-containing protein 44, putative isoform 3 [Theobroma cacao] gb|EOY23638.1| U-box domain-containing protein 44, putative isoform 3 [Theobroma cacao]		
Niben101Scf08357g04021.1	emb|CDX74447.1|	*-*-	BnaA04g09420D [Brassica napus]		
Niben101Scf10889g01015.1	sp|Q8C5L7|RBM34_MOUSE	*-**	RNA-binding protein 34	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03735g03015.1	AT2G17972.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 34 Blast hits to 34 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=158		
Niben101Scf00946g00001.1	ref|XP_002532542.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF29836.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf15158g00007.1	sp|Q10WQ4|CH602_TRIEI	***-	60 kDa chaperonin 2	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process)
Niben101Scf01514g01002.1	sp|Q5ZMM5|ZN706_CHICK	--*-	Zinc finger protein 706	IPR026939 (At2g23090 like)	
Niben101Scf03693g05006.1	AT5G65650.1	*-*-	Protein of unknown function (DUF1195) LENGTH=185	IPR010608 (Protein of unknown function DUF1195)	
Niben101Scf05566g07001.1			Unknown protein		
Niben101Scf02724g05005.1	sp|P78968|PPZ_SCHPO	***-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf00983g03001.1	emb|CDX74218.1|	*-*-	BnaA03g28290D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283), IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf05246g01008.1	sp|Q92A83|HIS8_LISIN	*-**	Histidinol-phosphate aminotransferase	IPR021178 (Tyrosine transaminase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01791g01001.1	gb|ABF98470.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf04967g01001.1	sp|C6SXZ3|CSPL8_SOYBN	*-*-	CASP-like protein 1D1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf13137g00006.1	ref|XP_002535202.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF27181.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01148g02008.1	sp|Q6UNT2|RL5_CUCSA	***-	60S ribosomal protein L5	IPR005484 (Ribosomal protein L18/L5), IPR025607 (Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0008097 (5S rRNA binding)
Niben101Scf03326g01029.1	sp|Q80Y84|KDM5B_MOUSE	*-*-	Lysine-specific demethylase 5B	IPR003347 (JmjC domain)	
Niben101Scf02044g05018.1	ref|XP_005707831.1|	*-**	transferase, transferring glycosyl groups [Galdieria sulphuraria] gb|EME31311.1| transferase, transferring glycosyl groups [Galdieria sulphuraria]	IPR007657 (Glycosyltransferase AER61, uncharacterised)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf01486g01003.1	AT1G47670.1	*-*-	Transmembrane amino acid transporter family protein LENGTH=519	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf08465g02007.1	sp|Q00423|HMGYA_SOYBN	***-	HMG-Y-related protein A	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR020478 (AT hook-like)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf05349g02008.1	AT1G33475.1	*-*-	SNARE-like superfamily protein LENGTH=255		
Niben101Scf00457g06011.1	gb|KEH29626.1|	--*-	strubbelig receptor family protein [Medicago truncatula]		
Niben101Scf04650g01006.1	sp|Q8S8U1|YCF2B_ATRBE	*-*-	Protein Ycf2 B	IPR008543 (Uncharacterised protein family Ycf2), IPR011338 (Restriction endonuclease, type II, BamHI/BglIII/BstY)	GO:0000287 (magnesium ion binding), GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0009036 (Type II site-specific deoxyribonuclease activity), GO:0009307 (DNA restriction-modification system), GO:0009507 (chloroplast)
Niben101Scf02622g12032.1			Unknown protein		
Niben101Scf14210g00020.1	AT1G01470.1	***-	Late embryogenesis abundant protein LENGTH=151	IPR004864 (Late embryogenesis abundant protein, LEA-14), IPR013783 (Immunoglobulin-like fold)	GO:0009269 (response to desiccation)
Niben101Scf01409g01003.1	AT2G18910.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=131		
Niben101Scf06966g00015.1	emb|CDX74689.1|	***-	BnaA05g04350D [Brassica napus]	IPR027973 (Protein of unknown function DUF4602)	
Niben101Scf06807g02016.1	AT1G69980.1	***-	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=205		
Niben101Scf02174g01001.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02798g00044.1	sp|Q7WCU2|NUOD_BORBR	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08560g01019.1	sp|Q9SUY0|FB244_ARATH	*-*-	F-box protein	IPR017451 (F-box associated interaction domain)	
Niben101Scf00739g04026.1	sp|Q86JD4|SEC11_DICDI	****	Signal peptidase complex catalytic subunit sec11	IPR001733 (Peptidase S26B, eukaryotic signal peptidase), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016020 (membrane)
Niben101Scf05385g03009.1	AT5G42220.1	*-*-	Ubiquitin-like superfamily protein LENGTH=879		
Niben101Scf08142g00004.1	sp|Q5A4W8|BDF1_CANAL	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf05283g01001.1	AT5G11470.1	*-*-	bromo-adjacent homology (BAH) domain-containing protein LENGTH=757	IPR001025 (Bromo adjacent homology (BAH) domain)	GO:0003682 (chromatin binding)
Niben101Scf07475g00009.1	sp|Q5R3Z8|FBXL2_PONAB	***-	F-box/LRR-repeat protein 2	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf02897g00011.1	AT3G09970.1	***-	Calcineurin-like metallo-phosphoesterase superfamily protein LENGTH=309	IPR029052 (Metallo-dependent phosphatase-like)	
Niben101Scf08672g01001.1	sp|B4MLR8|UBP36_DROWI	*-**	Ubiquitin carboxyl-terminal hydrolase 36	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf02929g04067.1			Unknown protein		
Niben101Scf04778g02018.1	sp|Q9M069|E137_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 7	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05372g01005.1	sp|P78968|PPZ_SCHPO	***-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf21459g00013.1	AT3G62880.1	***-	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein LENGTH=136	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Scf18955g00007.1	AT3G58480.1	****	calmodulin-binding family protein LENGTH=575	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf09436g03005.1	AT2G26890.1	*-*-	DNAJ heat shock N-terminal domain-containing protein LENGTH=2554		
Niben101Scf05395g04024.1	sp|P97501|FMO3_MOUSE	****	Dimethylaniline monooxygenase [N-oxide-forming] 3	IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03983g00044.1	emb|CEG00108.1|	****	Pyridoxal phosphate-dependent transferase, major region, subdomain 1 [Ostreococcus tauri]	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00180g08002.1	sp|Q00024|PPO1_AGABI	--**	Polyphenol oxidase 1	IPR008922 (Uncharacterised domain, di-copper centre), IPR016213 (Polyphenol oxidase)	GO:0004097 (catechol oxidase activity), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0046148 (pigment biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf03945g00005.1	sp|Q5T2S8|ARMC4_HUMAN	--*-	Armadillo repeat-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf09089g01021.1	emb|CAA79676.1|	***-	beta-fructofuranosidase [Solanum tuberosum]	IPR001362 (Glycoside hydrolase, family 32), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06653g02031.1	emb|CDY42991.1|	***-	BnaC02g19650D [Brassica napus]		
Niben101Scf04608g01004.1	gb|KEH36172.1|	*-*-	pfkB family carbohydrate kinase [Medicago truncatula]		
Niben101Scf04122g03021.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01204g00002.1	sp|Q0WWQ1|ATG3_ARATH	***-	Autophagy-related protein 3	IPR007134 (Autophagy-related protein 3, N-terminal), IPR007135 (Autophagy-related protein 3), IPR019461 (Autophagy-related protein 3, C-terminal)	
Niben101Scf03870g01004.1	sp|P40108|ALDH_DAVTA	*-**	Aldehyde dehydrogenase	IPR015657 (Aminobutyraldehyde dehydrogenase), IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00812g02008.1	sp|Q9LEX0|P2A13_ARATH	***-	F-box protein PP2-A13	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf17324g01010.1	ref|XP_007021591.1|	--*-	Homeobox-leucine zipper protein ATHB-52, putative [Theobroma cacao] gb|EOY13116.1| Homeobox-leucine zipper protein ATHB-52, putative [Theobroma cacao]		
Niben101Scf13973g01009.1	dbj|BAF01865.1|	*-*-	CER1 protein [Arabidopsis thaliana]		
Niben101Scf01078g00013.1	sp|Q6PDK2|KMT2D_MOUSE	--*-	Histone-lysine N-methyltransferase 2D	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01175g00010.1	gb|AAX57279.1|	*-*-	CT099 [Solanum peruvianum]	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf06026g00006.1	AT3G29180.1	***-	Protein of unknown function (DUF1336) LENGTH=513	IPR009769 (Domain of unknown function DUF1336)	
Niben101Ctg11286g00002.1	sp|Q9STS3|CDC23_ARATH	*-**	Anaphase-promoting complex subunit 8	IPR007192 (Cdc23)	GO:0005680 (anaphase-promoting complex), GO:0030071 (regulation of mitotic metaphase/anaphase transition)
Niben101Scf08338g00003.1	sp|O00567|NOP56_HUMAN	*-*-	Nucleolar protein 56	IPR002687 (Nop domain)	
Niben101Scf11215g00025.1	AT2G42770.1	****	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein LENGTH=232	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf05203g02001.1	sp|P83332|TLP1_PRUPE	*-*-	Thaumatin-like protein 1	IPR001938 (Thaumatin)	
Niben101Scf05938g01045.1	sp|P82381|ICI_LINUS	-**-	Proteinase inhibitor	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	
Niben101Scf06347g02009.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf33454g00015.1	AT2G39650.1	***-	Protein of unknown function (DUF506) LENGTH=291	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf03021g03035.1	sp|Q9SLK6|ALA6_ARATH	*-**	Phospholipid-transporting ATPase 6	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane)
Niben101Scf04727g03006.1	sp|Q2SD23|FADA_HAHCH	***-	3-ketoacyl-CoA thiolase	IPR002155 (Thiolase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf05124g01017.1			Unknown protein		
Niben101Scf04103g02004.1	tpg|DAA47038.1|	--*-	TPA: hypothetical protein ZEAMMB73_411286 [Zea mays]		
Niben101Scf12290g01005.1	AT4G01070.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03791g00010.1	sp|Q84W80|FBL42_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain), IPR013101 (Leucine-rich repeat 2)	GO:0005515 (protein binding)
Niben101Scf26689g00001.1	AT4G08850.1	*-**	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03102g00014.1	AT5G58000.1	*-*-	Reticulon family protein LENGTH=487	IPR003388 (Reticulon)	
Niben101Scf07935g02003.1	sp|Q94JM3|ARFB_ARATH	*-*-	Auxin response factor 2	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf05298g06007.1	sp|P78968|PPZ_SCHPO	***-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf04392g04002.1	sp|Q6Q152|CPY57_ARATH	--*-	Peptidyl-prolyl cis-trans isomerase CYP57		
Niben101Scf02918g01007.1	sp|Q8S8V2|YCF2A_ATRBE	*-*-	Protein Ycf2 A	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf05813g03001.1	sp|O48723|PLP2_ARATH	***-	Patatin-like protein 2	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf03029g01005.1	emb|CDY46504.1|	-**-	BnaA02g27540D [Brassica napus]		
Niben101Scf00379g01004.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf24096g00005.1	sp|Q9SY02|PP301_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01734g01059.1	sp|A4QK22|NDHK_ARAHI	****	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic	IPR001268 (NADH:ubiquinone oxidoreductase, 30kDa subunit), IPR006138 (NADH-ubiquinone oxidoreductase, 20 Kd subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00126g00008.1	AT1G77700.1	***-	Pathogenesis-related thaumatin superfamily protein LENGTH=356	IPR001938 (Thaumatin)	
Niben101Scf02427g03004.1	AT5G65860.1	***-	ankyrin repeat family protein LENGTH=346	IPR020683 (Ankyrin repeat-containing domain), IPR026480 (Arginine N-methyltransferase 2-like domain), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005515 (protein binding)
Niben101Scf09666g02005.1	emb|CDY70616.1|	***-	BnaA03g54770D [Brassica napus]		
Niben101Scf00748g00004.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf05434g02023.1	sp|Q9ZJA1|RECG_HELPJ	*-**	ATP-dependent DNA helicase RecG	IPR001650 (Helicase, C-terminal), IPR012340 (Nucleic acid-binding, OB-fold), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf04845g00030.1	sp|Q8DB17|AQPZ_VIBVU	*-*-	Aquaporin Z	IPR000425 (Major intrinsic protein), IPR002182 (NB-ARC), IPR023271 (Aquaporin-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0043531 (ADP binding)
Niben101Scf00412g01011.1	sp|A0M527|MURG_GRAFK	****	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	IPR007235 (Glycosyl transferase, family 28, C-terminal), IPR009695 (Diacylglycerol glucosyltransferase, N-terminal)	GO:0005975 (carbohydrate metabolic process), GO:0009247 (glycolipid biosynthetic process), GO:0016758 (transferase activity, transferring hexosyl groups), GO:0030246 (carbohydrate binding), GO:0030259 (lipid glycosylation)
Niben101Scf04077g05008.1	sp|Q9NSD9|SYFB_HUMAN	*-**	Phenylalanine--tRNA ligase beta subunit	IPR005146 (B3/B4 tRNA-binding domain)	GO:0003723 (RNA binding), GO:0004826 (phenylalanine-tRNA ligase activity)
Niben101Scf06131g00002.1	AT1G21170.1	***-	Exocyst complex component SEC5 LENGTH=1090		
Niben101Scf06851g01006.1	emb|CDX79304.1|	***-	BnaC06g19990D [Brassica napus]		
Niben101Scf15972g01021.1	AT3G02890.1	*-*-	RING/FYVE/PHD zinc finger superfamily protein LENGTH=994		
Niben101Scf03507g05004.1	AT1G16870.1	***-	mitochondrial 28S ribosomal protein S29-related LENGTH=480	IPR019368 (Ribosomal protein S23/S29, mitochondrial)	
Niben101Scf05315g00012.1	sp|Q9UJC3|HOOK1_HUMAN	--*-	Protein Hook homolog 1		
Niben101Scf13646g00001.1			Unknown protein		
Niben101Scf10006g00008.1			Unknown protein		
Niben101Scf17044g00008.1	sp|Q8BR27|F214B_MOUSE	*-*-	Protein FAM214B	IPR025261 (Domain of unknown function DUF4210)	
Niben101Scf01209g02009.1	AT4G00340.1	****	receptor-like protein kinase 4 LENGTH=818	IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07327g03002.1	sp|Q7KU24|CHD1_DROME	*-**	Chromodomain-helicase-DNA-binding protein 1	IPR000330 (SNF2-related), IPR014978 (Glutamine-Leucine-Glutamine, QLQ), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf00682g05017.1	AT2G36670.1	***-	Eukaryotic aspartyl protease family protein LENGTH=512	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04457g04016.1			Unknown protein		
Niben101Scf04030g01001.1	sp|Q32PH0|TPPC9_BOVIN	***-	Trafficking protein particle complex subunit 9	IPR013935 (TRAPP II complex, Trs120)	
Niben101Scf03947g00005.1	sp|P93004|PIP27_ARATH	*-*-	Aquaporin PIP2-7	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00854g04109.1	sp|A8AZM2|RL2_STRGC	*-*-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01797g03024.1	gb|KEH36694.1|	*-*-	F-box/LRR protein [Medicago truncatula]		
Niben101Scf04237g00003.1	sp|Q3EDF8|PPR28_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf01188g03008.1	AT1G34220.1	***-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=649	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf01749g00001.1	sp|Q97BF6|ATKB_THEVO	*-**	Potassium-transporting ATPase B chain	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0005507 (copper ion binding), GO:0006812 (cation transport), GO:0016021 (integral component of membrane), GO:0019829 (cation-transporting ATPase activity), GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf01798g08001.1	sp|Q0CGL5|NACB_ASPTN	*-*-	Nascent polypeptide-associated complex subunit beta	IPR002715 (Nascent polypeptide-associated complex NAC domain)	
Niben101Scf02636g07002.1			Unknown protein		
Niben101Scf12320g00001.1	gb|KEH33538.1|	****	hydroxymethylglutaryl-CoA lyase [Medicago truncatula]	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004419 (hydroxymethylglutaryl-CoA lyase activity)
Niben101Scf08721g01039.1	sp|Q9LFW3|COBL4_ARATH	***-	COBRA-like protein 4	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf02740g00003.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf10842g00001.1	sp|Q7WTR3|MDTK_ERWAM	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00069g15020.1	AT5G37770.1	****	EF hand calcium-binding protein family LENGTH=161	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01436g04003.1	sp|Q5YDB6|CPL1_ARATH	***-	RNA polymerase II C-terminal domain phosphatase-like 1	IPR004274 (NLI interacting factor), IPR014720 (Double-stranded RNA-binding domain), IPR023214 (HAD-like domain)	GO:0005515 (protein binding)
Niben101Scf15425g00001.1	sp|Q9SKU1|CLC1_ARATH	*-**	Clathrin light chain 1	IPR000996 (Clathrin light chain)	GO:0005198 (structural molecule activity), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030130 (clathrin coat of trans-Golgi network vesicle), GO:0030132 (clathrin coat of coated pit)
Niben101Scf00471g02005.1			Unknown protein		
Niben101Scf19266g01015.1	sp|Q40477|ERF4_TOBAC	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06852g00001.1	sp|Q9C652|RBP1_ARATH	****	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03227g03016.1	sp|Q3C1N8|RK32_NICSY	***-	50S ribosomal protein L32, chloroplastic		
Niben101Scf00286g01015.1	sp|Q04264|PDS5_YEAST	*-*-	Sister chromatid cohesion protein PDS5		
Niben101Scf00530g01001.1	sp|Q40478|ERF5_TOBAC	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05830g03008.1	ref|NP_001059179.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAF21093.1| [Oryza sativa Japonica Group]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf02494g02006.1	sp|Q68W99|KAD_RICTY	****	Adenylate kinase	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf04321g00006.1	ref|XP_007016521.1|	***-	Domain of Uncharacterized protein function, putative [Theobroma cacao] gb|EOY34140.1| Domain of Uncharacterized protein function, putative [Theobroma cacao]	IPR010369 (Protein of unknown function DUF966)	
Niben101Scf00477g00016.1	sp|Q0JD42|PDI52_ORYSJ	*-*-	Protein disulfide isomerase-like 5-2	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf00920g09027.1	AT4G13150.1	*-*-	unknown protein; Has 83 Blast hits to 82 proteins in 37 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). LENGTH=347		
Niben101Scf05772g00005.1	sp|Q852F6|ZIP2_ORYSJ	****	Zinc transporter 2	IPR003689 (Zinc/iron permease)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00901g07013.1	dbj|BAH57107.1|	--*-	[Arabidopsis thaliana]		
Niben101Scf13589g00001.1	sp|Q70XX7|PETD_AMBTC	***-	Cytochrome b6-f complex subunit 4	IPR005798 (Cytochrome b/b6, C-terminal)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity)
Niben101Scf11235g04014.1	sp|O65420|VAL3_ARATH	--*-	B3 domain-containing transcription factor VAL3	IPR015300 (DNA-binding pseudobarrel domain)	
Niben101Scf01752g03009.1	sp|Q6IP65|RCD1_XENLA	***-	Cell differentiation protein RCD1 homolog	IPR007216 (Rcd1), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02822g02014.1	sp|Q2R4J4|C3H63_ORYSJ	***-	Zinc finger CCCH domain-containing protein 63	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf02658g02016.1	sp|Q9FN04|AAP4_ARATH	***-	Amino acid permease 4	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf05364g00013.1	sp|O80959|PLP6_ARATH	*-*-	Patatin-like protein 6		
Niben101Scf03918g00006.1	sp|Q9SYH2|TAF9_ARATH	****	Transcription initiation factor TFIID subunit 9	IPR003162 (Transcription initiation factor TAFII31), IPR009072 (Histone-fold)	GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity)
Niben101Scf07576g04013.1	sp|Q7M1E7|PGLR2_CHAOB	*-**	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02730g00005.1	gb|ACG42565.1|	***-	calcium homeostasis regulator CHoR1 [Zea mays]		
Niben101Scf10688g00017.1	AT3G33530.3	***-	Transducin family protein / WD-40 repeat family protein LENGTH=1376	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04052g03016.1	sp|B9SXY8|CSPLE_RICCO	--*-	CASP-like protein 4D1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf00991g05008.1	sp|Q84P97|VDAC5_ORYSJ	****	Mitochondrial outer membrane protein porin 5	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0055085 (transmembrane transport)
Niben101Scf00709g07016.1	AT2G23080.1	****	Protein kinase superfamily protein LENGTH=333	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf20389g00009.1	sp|Q9SA69|Y1301_ARATH	*-*-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf28267g00011.1	sp|Q9LSY5|U71B7_ARATH	*-*-	UDP-glycosyltransferase 71B7		
Niben101Scf00626g01012.1	sp|Q8LF97|ASK21_ARATH	***-	SKP1-like protein 21	IPR001232 (S-phase kinase-associated protein 1-like), IPR011333 (BTB/POZ fold), IPR016072 (SKP1 component, dimerisation)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf04500g01001.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf02552g01002.1			Unknown protein		
Niben101Scf02041g04034.1	sp|P93047|HMGB3_ARATH	*-*-	High mobility group B protein 3	IPR009071 (High mobility group box domain)	
Niben101Scf06187g01029.1	sp|Q08E13|RNF10_BOVIN	***-	RING finger protein 10	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00712g12001.1	sp|B9SLR1|Y231_RICCO	*-*-	UPF0392 protein RCOM_0530710	IPR008166 (Domain of unknown function DUF23)	
Niben101Scf01139g02006.1	AT5G65340.1	***-	Protein of unknown function, DUF617 LENGTH=253	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf09597g00012.1	sp|Q8L7F9|B3GTF_ARATH	****	Beta-1,3-galactosyltransferase 15	IPR002659 (Glycosyl transferase, family 31), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane), GO:0030246 (carbohydrate binding)
Niben101Scf14708g00025.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06162g00009.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf13762g01048.1	AT5G54890.1	****	RNA-binding CRS1 / YhbY (CRM) domain-containing protein LENGTH=358	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf11552g04016.1	sp|A7IC67|DNAJ_XANP2	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf01888g06013.1	sp|Q39134|AAP3_ARATH	***-	Amino acid permease 3	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf08294g03012.1	sp|Q9C6W6|TPS29_ARATH	*-**	Terpenoid synthase 29	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf03390g04001.1	sp|Q9LUQ6|RL192_ARATH	***-	60S ribosomal protein L19-2	IPR000196 (Ribosomal protein L19/L19e domain), IPR023638 (Ribosomal protein L19/L19e conserved site), IPR027547 (Ribosomal protein L19/L19e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07121g05012.1	AT4G37790.1	*-*-	Homeobox-leucine zipper protein family LENGTH=278	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05855g02002.1	sp|Q9CZV8|FXL20_MOUSE	*-*-	F-box/LRR-repeat protein 20	IPR001810 (F-box domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02291g05007.1	sp|Q8W234|SEUSS_ARATH	*-*-	Transcriptional corepressor SEUSS	IPR029005 (LIM-domain binding protein/SEUSS)	
Niben101Scf01063g10005.1			Unknown protein	IPR008546 (Domain of unknown function DUF828)	
Niben101Scf08533g01024.1	sp|Q3EC97|FBL14_ARATH	***-	F-box/LRR-repeat protein 14	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf04156g01011.1	AT5G53050.2	***-	alpha/beta-Hydrolases superfamily protein LENGTH=396	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07549g01010.1			Unknown protein		
Niben101Scf16613g04003.1	sp|Q9FJX5|BT4_ARATH	***-	BTB/POZ and TAZ domain-containing protein 4	IPR000197 (Zinc finger, TAZ-type), IPR011333 (BTB/POZ fold)	GO:0003712 (transcription cofactor activity), GO:0004402 (histone acetyltransferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf07054g01005.1	AT1G64830.1	***-	Eukaryotic aspartyl protease family protein LENGTH=431	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03280g00006.1	sp|Q5JIZ5|TKSP_THEKO	*-**	Subtilisin-like serine protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02824g03021.1			Unknown protein		
Niben101Scf02340g07014.1	sp|P19704|T1SA_ECOLX	--*-	Type-1 restriction enzyme EcoAI specificity protein		
Niben101Scf01037g09012.1	sp|B8DPN2|SYT_DESVM	****	Threonine--tRNA ligase	IPR002320 (Threonine-tRNA ligase, class IIa)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004829 (threonine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006435 (threonyl-tRNA aminoacylation), GO:0016876 (ligase activity, forming aminoacyl-tRNA and related compounds), GO:0043039 (tRNA aminoacylation)
Niben101Scf01326g06002.1	sp|Q9FLE9|PRE1_ARATH	***-	Transcription factor PRE1	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf14717g00008.1	sp|Q9FGH4|E139_ARATH	***-	Glucan endo-1,3-beta-glucosidase 9	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08015g05003.1	ref|XP_002515136.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF47120.1| conserved hypothetical protein [Ricinus communis]	IPR022227 (Protein of unknown function DUF3754)	
Niben101Scf00975g03006.1	sp|O97159|CHDM_DROME	--**	Chromodomain-helicase-DNA-binding protein Mi-2 homolog	IPR009057 (Homeodomain-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05385g04005.1	emb|CDI54575.1|	--*-	conserved hypothetical protein [Melanopsichium pennsylvanicum 4]	IPR026627 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2)	GO:0005743 (mitochondrial inner membrane), GO:0005747 (mitochondrial respiratory chain complex I)
Niben101Scf01012g02005.1			Unknown protein		
Niben101Scf11360g00009.1	sp|P71019|FABD_BACSU	*-*-	Malonyl CoA-acyl carrier protein transacylase	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0008152 (metabolic process), GO:0016740 (transferase activity)
Niben101Scf01188g09005.1	AT2G44810.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=357	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf03963g02006.1	sp|Q67Y83|SCP51_ARATH	****	Serine carboxypeptidase-like 51	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06483g00007.1	AT1G30760.1	****	FAD-binding Berberine family protein LENGTH=534	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf16252g01007.1	gb|ABI34321.1|	*-*-	RNase H family protein [Solanum demissum]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf04273g00001.1	sp|Q11PV4|METE_CYTH3	*-**	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	IPR013215 (Cobalamin-independent methionine synthase MetE, N-terminal)	GO:0003871 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity), GO:0008270 (zinc ion binding), GO:0008652 (cellular amino acid biosynthetic process)
Niben101Scf01676g00006.1	gb|AIU48487.1|	***-	AT4G36440-like protein, partial [Theobroma cacao]		
Niben101Scf01678g04014.1	ref|XP_002529236.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF33149.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04892g00009.1	sp|A6MMJ8|RPOC1_DIOEL	*-**	DNA-directed RNA polymerase subunit beta'	IPR006592 (RNA polymerase, N-terminal), IPR007066 (RNA polymerase Rpb1, domain 3), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003677 (DNA binding), GO:0003735 (structural constituent of ribosome), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006351 (transcription, DNA-templated), GO:0006412 (translation)
Niben101Scf00152g12002.1	AT1G75620.1	*-*-	glyoxal oxidase-related protein LENGTH=547	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR014756 (Immunoglobulin E-set), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf06348g00002.1	sp|Q9H479|FN3K_HUMAN	*-*-	Fructosamine-3-kinase	IPR011009 (Protein kinase-like domain), IPR016477 (Fructosamine/Ketosamine-3-kinase)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00234g01030.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf14010g00008.1	sp|Q54B65|SF3A2_DICDI	*-*-	Splicing factor 3A subunit 2		
Niben101Scf05969g01023.1	sp|Q8VZ37|AP3S_ARATH	****	AP-3 complex subunit sigma	IPR000804 (Clathrin adaptor complex, small chain), IPR016635 (Adaptor protein complex, sigma subunit)	GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030123 (AP-3 adaptor complex)
Niben101Scf01731g10002.1	sp|Q9QYU1|PEX19_RAT	*-*-	Peroxisomal biogenesis factor 19	IPR006708 (Pex19 protein)	GO:0005777 (peroxisome)
Niben101Scf01259g06001.1	AT1G30040.1	***-	gibberellin 2-oxidase LENGTH=341	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf08984g00013.1	ref|XP_003589865.1|	--*-	B3 domain-containing protein [Medicago truncatula] gb|AES60116.1| E1 protein [Medicago truncatula]		
Niben101Scf05917g02012.1	sp|O22131|LBD18_ARATH	***-	LOB domain-containing protein 18		
Niben101Scf08365g01008.1			Unknown protein		
Niben101Scf03009g05001.1	AT3G19320.1	*-*-	Leucine-rich repeat (LRR) family protein LENGTH=493		
Niben101Scf02450g01001.1	sp|Q9M1S9|CDT1B_ARATH	*-*-	CDT1-like protein b		
Niben101Scf01013g04008.1	AT1G04430.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=623	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf00116g05010.1	sp|Q9LJB7|BBX32_ARATH	*-**	B-box zinc finger protein 32	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf03790g01009.1	sp|G5CEW6|IF4G_WHEAT	*-*-	Eukaryotic translation initiation factor 4G	IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00271g04022.1	sp|Q9SHE9|LBD4_ARATH	***-	LOB domain-containing protein 4	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf03245g08001.1	ref|XP_003628195.1|	****	WD repeat-containing protein [Medicago truncatula] gb|AET02671.1| retinoblastoma-binding-like protein [Medicago truncatula]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00074g02024.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR025875 (Leucine rich repeat 4), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf03723g00010.1	ref|NP_001058682.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf13270g03004.1	AT5G54510.1	***-	Auxin-responsive GH3 family protein LENGTH=612	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf01964g08027.1	sp|P93011|PP182_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02346g05007.1	gb|AES95562.2|	***-	cyclops protein, putative [Medicago truncatula]		
Niben101Ctg07204g00002.1	sp|Q9PW71|DUS4_CHICK	*-**	Dual specificity protein phosphatase 4	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf01369g02002.1	sp|Q8BFW9|GTR12_MOUSE	*-**	Solute carrier family 2, facilitated glucose transporter member 12	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02361g07001.1	sp|Q39117|TGT2_ARATH	*-*-	Trihelix transcription factor GT-2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01999g07010.1	emb|CDY63745.1|	***-	BnaC05g07770D [Brassica napus]	IPR010410 (Protein of unknown function DUF1005)	
Niben101Scf03009g03002.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY), IPR018872 (Zn-cluster domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01943g03007.1	AT2G31340.1	***-	embryo defective 1381 LENGTH=559	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01927g01014.1	ref|XP_002514212.1|	*-**	transferase, transferring pentosyl groups, putative [Ricinus communis] gb|EEF48166.1| transferase, transferring pentosyl groups, putative [Ricinus communis]	IPR007306 (Initiator tRNA phosphoribosyl transferase)	GO:0016763 (transferase activity, transferring pentosyl groups)
Niben101Scf06347g02007.1	sp|P48978|PGLR_MALDO	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06613g05006.1	sp|Q9AR19|GCN5_ARATH	*-*-	Histone acetyltransferase GCN5	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf05618g00008.1	gb|KEH42602.1|	--**	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00430g01007.1	sp|P38011|GBLP_YEAST	*-**	Guanine nucleotide-binding protein subunit beta-like protein	IPR011009 (Protein kinase-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0008270 (zinc ion binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00714g00002.1	sp|Q88C93|ALGC_PSEPK	--*-	Phosphomannomutase/phosphoglucomutase	IPR005843 (Alpha-D-phosphohexomutase, C-terminal), IPR016055 (Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III)	GO:0005975 (carbohydrate metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf04921g01027.1	sp|Q5A8A2|NPC2_CANAL	*-*-	Phosphatidylglycerol/phosphatidylinositol transfer protein	IPR014756 (Immunoglobulin E-set)	
Niben101Scf02937g03005.1	AT1G10710.1	*-*-	poor homologous synapsis 1 LENGTH=410		
Niben101Scf02734g00008.1	AT4G31010.1	****	RNA-binding CRS1 / YhbY (CRM) domain-containing protein LENGTH=405	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Ctg15793g00001.1	gb|AES78094.2|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00928g00008.1	AT1G53570.1	*-**	mitogen-activated protein kinase kinase kinase 3 LENGTH=609	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08806g02004.1	sp|B4TMG8|AES_SALSV	--*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01184g09019.1	emb|CAD29727.1|	*-*-	hero resistance protein 3 homologue [Solanum lycopersicum]		
Niben101Scf02253g00002.1	AT3G28850.1	***-	Glutaredoxin family protein LENGTH=428	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf05483g01005.1			Unknown protein		
Niben101Scf00332g07022.1	sp|Q3K5T2|RSMA_PSEPF	****	Ribosomal RNA small subunit methyltransferase A	IPR001737 (Ribosomal RNA adenine methyltransferase KsgA/Erm), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0000154 (rRNA modification), GO:0000179 (rRNA (adenine-N6,N6-)-dimethyltransferase activity), GO:0006364 (rRNA processing), GO:0008649 (rRNA methyltransferase activity)
Niben101Scf01908g01003.1	AT5G15050.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=434	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf02027g02020.1	sp|Q8NFU5|IPMK_HUMAN	*-**	Inositol polyphosphate multikinase	IPR005522 (Inositol polyphosphate kinase)	GO:0008440 (inositol-1,4,5-trisphosphate 3-kinase activity)
Niben101Scf08884g00008.1	sp|Q5U3U0|PHYD1_DANRE	***-	Phytanoyl-CoA dioxygenase domain-containing protein 1	IPR008775 (Phytanoyl-CoA dioxygenase)	
Niben101Scf09024g00004.1	sp|Q9MAM3|KCS1_ARATH	***-	3-ketoacyl-CoA synthase 1	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf05438g05008.1	gb|KEH36884.1|	***-	F-box plant-like protein, putative [Medicago truncatula]	IPR027949 (Petal formation-expressed)	
Niben101Scf02793g24016.1	sp|Q27RY7|YCF2_SOLTU	*-*-	Protein Ycf2		
Niben101Scf04328g00049.1	sp|B1A930|PSBD_CARPA	*-**	Photosystem II D2 protein	IPR000484 (Photosynthetic reaction centre, L/M), IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0009772 (photosynthetic electron transport in photosystem II), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf04103g11001.1	sp|Q9H252|KCNH6_HUMAN	*-**	Potassium voltage-gated channel subfamily H member 6	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR020683 (Ankyrin repeat-containing domain)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0005515 (protein binding), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf15381g00010.1	ref|XP_002532100.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF30290.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01693g01003.1	sp|Q42891|LGUL_SOLLC	****	Lactoylglutathione lyase	IPR004361 (Glyoxalase I), IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	GO:0004462 (lactoylglutathione lyase activity), GO:0046872 (metal ion binding)
Niben101Scf04082g02002.1	sp|Q8L7F9|B3GTF_ARATH	****	Beta-1,3-galactosyltransferase 15	IPR002659 (Glycosyl transferase, family 31), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane), GO:0030246 (carbohydrate binding)
Niben101Scf10205g00006.1	sp|Q9ZW24|GSTU7_ARATH	*-*-	Glutathione S-transferase U7	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf06725g02007.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf02482g00002.1	sp|Q6H7U5|CIPKQ_ORYSJ	****	CBL-interacting protein kinase 26	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07030g04003.1	sp|Q4P7X6|IWS1_USTMA	*-**	Transcription factor IWS1	IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf00123g04003.1	sp|P25076|CY11_SOLTU	****	Cytochrome c1-1, heme protein, mitochondrial	IPR002326 (Cytochrome c1)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf07793g01019.1	sp|Q7SXL7|FL2D_DANRE	*-*-	Pre-mRNA-splicing regulator WTAP		
Niben101Scf01553g00002.1	emb|CDY17767.1|	***-	BnaC08g21750D [Brassica napus]		
Niben101Scf01105g03001.1	sp|Q8VYI9|NLTL5_ARATH	--*-	Non-specific lipid-transfer protein-like protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf08242g01012.1			Unknown protein		
Niben101Scf02268g05007.1	AT5G64970.1	***-	Mitochondrial substrate carrier family protein LENGTH=428	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf22811g00005.1	ref|WP_019475137.1|	*-**	membrane protein [Prochlorococcus sp. W2]	IPR003425 (Uncharacterised protein family Ycf19)	GO:0016020 (membrane)
Niben101Scf03351g04003.1	ref|XP_003618031.1|	*-**	Retinoblastoma-binding protein [Medicago truncatula] gb|AET00990.1| DWNN domain, A CCHC-type zinc finger protein [Medicago truncatula]	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014891 (DWNN domain)	GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf02063g03021.1	sp|D8QNI1|CSPLH_SELML	***-	CASP-like protein 5A1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf01157g01002.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf01888g09014.1	sp|Q9V3I8|OGG1_DROME	*-**	N-glycosylase/DNA lyase	IPR011257 (DNA glycosylase), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair)
Niben101Scf00539g02003.1	AT1G20160.1	*-**	Subtilisin-like serine endopeptidase family protein LENGTH=769	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf08326g00054.1	AT3G59580.1	*-*-	Plant regulator RWP-RK family protein LENGTH=894	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf02012g01012.1	AT1G70070.1	***-	DEAD/DEAH box helicase, putative LENGTH=1171	IPR001650 (Helicase, C-terminal), IPR012961 (DSH, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf09268g00008.1	sp|P54654|CAP_DICDI	***-	Adenylyl cyclase-associated protein	IPR001837 (Adenylate cyclase-associated CAP), IPR017901 (C-CAP/cofactor C-like domain), IPR018106 (CAP, conserved site, N-terminal)	GO:0000902 (cell morphogenesis), GO:0003779 (actin binding), GO:0007010 (cytoskeleton organization)
Niben101Scf01934g03005.1	ref|XP_002519216.1|	--**	enzyme inhibitor, putative [Ricinus communis] gb|EEF43080.1| enzyme inhibitor, putative [Ricinus communis]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf18637g00016.1	sp|Q3J7V7|GATA_NITOC	***-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf02246g02002.1			Unknown protein		
Niben101Scf02807g11019.1	sp|Q9FHZ1|SCL23_ARATH	***-	Scarecrow-like protein 23	IPR005202 (Transcription factor GRAS)	
Niben101Scf15956g00005.1	sp|Q9SUD8|PP340_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07709g00003.1	AT4G37220.1	***-	Cold acclimation protein WCOR413 family LENGTH=202	IPR008892 (Cold acclimation WCOR413)	
Niben101Scf09523g04002.1	AT1G65730.1	***-	YELLOW STRIPE like 7 LENGTH=688	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf00687g00014.1	sp|Q9ZST4|GLNB_ARATH	****	Nitrogen regulatory protein P-II homolog	IPR002187 (Nitrogen regulatory protein PII), IPR011322 (Nitrogen regulatory PII-like, alpha/beta)	GO:0006808 (regulation of nitrogen utilization), GO:0030234 (enzyme regulator activity)
Niben101Scf03482g00011.1	sp|Q15650|TRIP4_HUMAN	*-*-	Activating signal cointegrator 1	IPR009349 (Zinc finger, C2HC5-type)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf06726g00040.1	sp|Q3J8Y9|SYC_NITOC	***-	Cysteine--tRNA ligase	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR024909 (Cysteinyl-tRNA synthetase/mycothiol ligase)	
Niben101Scf01749g02007.1	sp|B0R0I6|CHD8_DANRE	*-**	Chromodomain-helicase-DNA-binding protein 8	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR014012 (Helicase/SANT-associated, DNA binding), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029295 (Snf2 ATP coupling domain)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0042393 (histone binding)
Niben101Scf06901g01012.1	AT1G04220.1	***-	3-ketoacyl-CoA synthase 2 LENGTH=528	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03325g01014.1	AT1G02700.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=247		
Niben101Scf00595g08041.1	sp|F4JVN6|TPPII_ARATH	****	Tripeptidyl-peptidase 2	IPR015500 (Peptidase S8, subtilisin-related), IPR022229 (Peptidase S8A, tripeptidyl peptidase II), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03340g00002.1	sp|A7MFC3|MDTK_CROS8	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf05434g02020.1	sp|Q9M9Q6|SCP50_ARATH	****	Serine carboxypeptidase-like 50	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf09987g02012.1	emb|CDY54019.1|	***-	BnaCnng26020D [Brassica napus]		
Niben101Scf01119g06003.1	sp|Q9FN32|YIPL7_ARATH	***-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf02011g03015.1			Unknown protein		
Niben101Scf04529g01001.1	dbj|GAC97411.1|	*-**	retrograde transport, endosome to Golgi-related protein [Pseudozyma hubeiensis SY62]	IPR012501 (Vps54-like), IPR021133 (HEAT, type 2)	GO:0042147 (retrograde transport, endosome to Golgi)
Niben101Scf03723g03006.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf00505g02002.1	gb|ABI34321.1|	--*-	RNase H family protein [Solanum demissum]		
Niben101Scf05133g01014.1	sp|Q9FZ87|GH317_ARATH	*-*-	Indole-3-acetic acid-amido synthetase GH3.17	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf11004g00007.1	AT5G19250.1	***-	Glycoprotein membrane precursor GPI-anchored LENGTH=196		
Niben101Scf05316g01002.1	sp|Q6NPT8|PP2B1_ARATH	***-	F-box protein PP2-B1	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf10434g00018.1	sp|Q9FGE9|TBL12_ARATH	***-	Protein trichome birefringence-like 12	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf04024g00013.1	sp|Q9UTC3|PSF3_SCHPO	***-	DNA replication complex GINS protein psf3	IPR021151 (GINS complex)	
Niben101Scf05961g03015.1	sp|Q0WRW8|B561K_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf07533g03012.1	sp|Q9FJ45|GDL83_ARATH	*-*-	GDSL esterase/lipase		
Niben101Scf06996g02005.1	AT5G59450.1	***-	GRAS family transcription factor LENGTH=610	IPR005202 (Transcription factor GRAS)	
Niben101Scf00069g12007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01051g07008.1	sp|O54981|STIP1_CRIGR	*-*-	Stress-induced-phosphoprotein 1	IPR006636 (Heat shock chaperonin-binding), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00739g04029.1	sp|P38605|CAS1_ARATH	***-	Cycloartenol synthase	IPR018333 (Squalene cyclase)	GO:0003824 (catalytic activity), GO:0016866 (intramolecular transferase activity)
Niben101Scf03341g02011.1	sp|Q9LN71|RING1_ARATH	--*-	E3 ubiquitin-protein ligase	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02844g03014.1	sp|Q9C7T4|BH096_ARATH	***-	Transcription factor bHLH96	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05080g01011.1	sp|Q9FLP0|MA651_ARATH	****	65-kDa microtubule-associated protein 1	IPR007145 (Microtubule-associated protein, MAP65/Ase1/PRC1)	GO:0000226 (microtubule cytoskeleton organization), GO:0000910 (cytokinesis), GO:0008017 (microtubule binding)
Niben101Scf06127g01010.1	AT2G28510.1	****	Dof-type zinc finger DNA-binding family protein LENGTH=288	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06348g00044.1	sp|Q9ZUA5|VIT1_ARATH	***-	Vacuolar iron transporter 1	IPR008217 (Ccc1 family)	
Niben101Scf00635g02005.1	sp|Q9H0X6|RN208_HUMAN	--*-	RING finger protein 208	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027370 (RING-type zinc-finger, LisH dimerisation motif)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00494g08002.1	sp|Q39263|ZFP4_ARATH	***-	Zinc finger protein 4	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf05206g02002.1	AT1G23000.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=358	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf02077g11005.1	gb|KEH31824.1|	****	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf03113g00001.1	sp|B8G4Q6|FTSH_CHLAD	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR007330 (MIT), IPR015415 (Vps4 oligomerisation, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02237g09006.1	AT5G62940.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=372	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01718g06004.1	AT1G31830.1	*-**	Amino acid permease family protein LENGTH=495	IPR002293 (Amino acid/polyamine transporter I), IPR011050 (Pectin lyase fold/virulence factor)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf05298g00004.1	AT2G37980.1	***-	O-fucosyltransferase family protein LENGTH=638	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf03945g00002.1	sp|Q8LG03|FB345_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00825g04020.1	gb|KEH27885.1|	*-*-	flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula]	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf11953g00001.1	sp|Q9M2J1|MCC19_ARATH	*-*-	MATH domain and coiled-coil domain-containing protein	IPR008974 (TRAF-like)	GO:0005515 (protein binding)
Niben101Scf14513g00007.1	sp|P16924|P4HA1_CHICK	*-*-	Prolyl 4-hydroxylase subunit alpha-1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02638g02010.1	gb|AES73595.2|	*-*-	calcium-binding EF hand protein [Medicago truncatula]		
Niben101Scf07223g03029.1	AT3G09570.1	***-	Lung seven transmembrane receptor family protein LENGTH=439	IPR009637 (Transmembrane receptor, eukaryota)	GO:0016021 (integral component of membrane)
Niben101Scf04404g05007.1	sp|Q9SS44|TF2B2_ARATH	****	Transcription initiation factor IIB-2	IPR000812 (Transcription factor TFIIB), IPR023486 (Transcription factor TFIIB, conserved site)	GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0017025 (TBP-class protein binding)
Niben101Scf04829g00009.1	sp|Q7RBX5|KC1_PLAYO	****	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00317g11001.1	emb|CDY19648.1|	***-	BnaC09g29040D [Brassica napus]	IPR021013 (ATPase, vacuolar ER assembly factor, Vma12)	
Niben101Scf05956g01009.1	AT4G16820.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=517	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf08640g00003.1	gb|AGL09494.1|	***-	NADH dehydrogenase 1 beta subcomplex subunit 8, partial [Thottea sp. JN-2013]		
Niben101Scf05776g01035.1	ref|XP_003588337.1|	*-*-	Ribosomal protein S10 [Medicago truncatula]		
Niben101Scf03439g02015.1			Unknown protein		
Niben101Scf18704g00001.1	sp|P83948|PME3_CITSI	****	Pectinesterase 3	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02174g01005.1	AT5G45030.1	***-	Trypsin family protein LENGTH=607	IPR012985 (Peptidase S64, Ssy5)	GO:0003824 (catalytic activity)
Niben101Scf02589g05005.1	emb|CDX96948.1|	*-*-	BnaC02g30860D [Brassica napus]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf02690g01010.1	emb|CDY31001.1|	***-	BnaC04g24230D [Brassica napus]		
Niben101Scf11743g00002.1	sp|Q5ZC82|LOG_ORYSJ	***-	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf02972g07011.1	sp|B2U092|GARL_SHIB3	***-	5-keto-4-deoxy-D-glucarate aldolase	IPR015813 (Pyruvate/Phosphoenolpyruvate kinase-like domain)	GO:0003824 (catalytic activity)
Niben101Scf04053g02011.1	sp|P20664|PRI1_MOUSE	*-**	DNA primase small subunit	IPR014052 (DNA primase, small subunit, eukaryotic/archaeal)	GO:0003896 (DNA primase activity), GO:0006269 (DNA replication, synthesis of RNA primer)
Niben101Scf14636g01008.1	AT1G68140.1	***-	Protein of unknown function (DUF1644) LENGTH=334	IPR012866 (Protein of unknown function DUF1644)	
Niben101Scf13137g00002.1	sp|Q9LK27|GTE8_ARATH	--*-	Transcription factor GTE8		
Niben101Scf15286g00004.1	sp|Q9LV10|PTR53_ARATH	***-	Protein NRT1/ PTR FAMILY 2.11	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf04480g00001.1	sp|Q9SV82|FBD40_ARATH	--*-	FBD-associated F-box protein		
Niben101Scf07105g04004.1	sp|Q94A78|ACCH4_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 4	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf05232g02009.1	sp|P93830|IAA17_ARATH	***-	Auxin-responsive protein IAA17	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf00388g00005.1	ref|XP_007018041.1|	--*-	Hedgehog receptor, putative isoform 3 [Theobroma cacao] gb|EOY15266.1| Hedgehog receptor, putative isoform 3 [Theobroma cacao]		
Niben101Scf03038g12007.1	emb|CDY51950.1|	***-	BnaA08g11680D [Brassica napus]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf06502g00003.1			Unknown protein		
Niben101Scf25181g00004.1	sp|Q6YSJ5|AGO16_ORYSJ	*-*-	Protein argonaute 16	IPR003100 (PAZ domain), IPR014811 (Domain of unknown function DUF1785)	GO:0005515 (protein binding)
Niben101Scf05412g02009.1	sp|Q5YDB5|CPL2_ARATH	***-	RNA polymerase II C-terminal domain phosphatase-like 2	IPR004274 (NLI interacting factor), IPR014720 (Double-stranded RNA-binding domain), IPR023214 (HAD-like domain)	GO:0005515 (protein binding)
Niben101Scf01402g00005.1	sp|O75179|ANR17_HUMAN	--*-	Ankyrin repeat domain-containing protein 17	IPR016197 (Chromo domain-like), IPR020683 (Ankyrin repeat-containing domain), IPR030300 (Signal recognition particle 43 kDa protein)	GO:0005515 (protein binding), GO:0009416 (response to light stimulus), GO:0009507 (chloroplast), GO:0045038 (protein import into chloroplast thylakoid membrane), GO:0080085 (signal recognition particle, chloroplast targeting)
Niben101Scf03628g01020.1	sp|Q8GWK5|GASA9_ARATH	***-	Gibberellin-regulated protein 9	IPR003854 (Gibberellin regulated protein)	
Niben101Scf02386g02001.1	AT3G28960.1	***-	Transmembrane amino acid transporter family protein LENGTH=405	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf00773g06006.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08799g00001.1	gb|ACZ64224.1|	***-	RPM1 interacting protein 4 transcript 2 [Lactuca saligna]	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf11161g00005.1	sp|Q91ZH7|ABHD3_MOUSE	***-	Abhydrolase domain-containing protein 3	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01983g03002.1	gb|AGY62799.1|	*-*-	orf148 (mitochondrion) [Eruca vesicaria subsp. sativa] gb|AHY20342.1| hypothetical protein (mitochondrion) (mitochondrion) [Brassica juncea var. tumida] gb|AIC83308.1| orf148 (mitochondrion) [Brassica oleracea var. botrytis]		
Niben101Scf02946g01013.1	sp|Q41916|CYT5_ARATH	****	Cysteine proteinase inhibitor 5	IPR000010 (Proteinase inhibitor I25, cystatin), IPR027214 (Cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf07250g03024.1	sp|C0HJB3|MANA_CANEN	****	Alpha-mannosidase	IPR011013 (Galactose mutarotase-like domain), IPR011330 (Glycoside hydrolase/deacetylase, beta/alpha-barrel), IPR013780 (Glycosyl hydrolase, family 13, all-beta), IPR028995 (Glycoside hydrolase, families 57/38, central domain)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004559 (alpha-mannosidase activity), GO:0005975 (carbohydrate metabolic process), GO:0006013 (mannose metabolic process), GO:0008270 (zinc ion binding), GO:0015923 (mannosidase activity), GO:0030246 (carbohydrate binding)
Niben101Scf06966g01013.1	sp|Q9SSF8|CDPKU_ARATH	*-**	Calcium-dependent protein kinase 30	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf08863g01024.1	emb|CDX95941.1|	*-*-	BnaA07g27900D [Brassica napus]	IPR008581 (Protein of unknown function DUF863, plant)	
Niben101Scf00439g04008.1	sp|Q8GZA6|PP113_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07883g04010.1	sp|Q6ZSG1|RN165_HUMAN	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00635g00004.1	emb|CDY53943.1|	***-	BnaA02g36930D [Brassica napus]		
Niben101Ctg14638g00001.1	sp|Q135Y3|NUOH2_RHOPS	*-*-	NADH-quinone oxidoreductase subunit H 2	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf00261g03001.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02078g08042.1	sp|A2BSJ2|SURE_PROMS	*-*-	5'-nucleotidase SurE	IPR002828 (Survival protein SurE-like phosphatase/nucleotidase)	GO:0016787 (hydrolase activity)
Niben101Scf03281g01014.1	sp|Q3KKE0|HEM6_PSEPF	****	Oxygen-dependent coproporphyrinogen-III oxidase	IPR001260 (Coproporphyrinogen III oxidase, aerobic)	GO:0004109 (coproporphyrinogen oxidase activity), GO:0006779 (porphyrin-containing compound biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf00592g05014.1	gb|AES59797.2|	***-	LA-related protein 6 LA RNA-binding domain protein [Medicago truncatula]	IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf02090g04019.1	AT1G67120.1	****	ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding LENGTH=5393	IPR011704 (ATPase, dynein-related, AAA domain), IPR025662 (Sigma-54 interaction domain, ATP-binding site 1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf03670g03007.1	sp|D6R901|U17LL_HUMAN	*-**	Ubiquitin carboxyl-terminal hydrolase 17-like protein 21	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf15543g01001.1	sp|Q1JP73|CI064_BOVIN	***-	UPF0553 protein C9orf64 homolog	IPR019438 (Protein of unknown function DUF2419)	
Niben101Scf03739g07010.1	sp|Q7XUW3|ALFL4_ORYSJ	--*-	PHD finger protein ALFIN-LIKE 4	IPR000330 (SNF2-related), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding)
Niben101Scf04316g08006.1	gb|AAV69754.1|	-**-	tobacco rattle virus-induced protein variant 2 [Arabidopsis thaliana]	IPR008889 (VQ)	
Niben101Scf05158g01038.1	gb|KEH28741.1|	***-	DUF2921 family protein [Medicago truncatula]	IPR021319 (Protein of unknown function DUF2921)	
Niben101Scf00822g01009.1	sp|P61028|RAB8B_MOUSE	***-	Ras-related protein Rab-8B	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf03145g00004.1	AT4G01810.1	*-*-	Sec23/Sec24 protein transport family protein LENGTH=880		
Niben101Scf01054g07004.1	sp|B3ER28|YIDC_AMOA5	--*-	Membrane protein insertase YidC		
Niben101Scf37796g00001.1	sp|P93311|RM02_ARATH	*-*-	60S ribosomal protein L2, mitochondrial		
Niben101Scf03488g09019.1	sp|Q8TT43|RL13_METAC	*-**	50S ribosomal protein L13	IPR005822 (Ribosomal protein L13), IPR011050 (Pectin lyase fold/virulence factor), IPR023563 (Ribosomal protein L13, conserved site), IPR023564 (Ribosomal protein L13 domain)	GO:0003735 (structural constituent of ribosome), GO:0005618 (cell wall), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf12090g00003.1	sp|Q9SP32|DCL1_ARATH	*-**	Endoribonuclease Dicer homolog 1	IPR005034 (Dicer dimerisation domain)	GO:0016891 (endoribonuclease activity, producing 5'-phosphomonoesters)
Niben101Scf01005g01015.1	sp|O80436|PTR29_ARATH	***-	Protein NRT1/ PTR FAMILY 5.5	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02145g09012.1	sp|Q9C519|WRKY6_ARATH	****	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00683g00016.1	sp|Q8H125|SCL5_ARATH	***-	Scarecrow-like protein 5	IPR005202 (Transcription factor GRAS), IPR030018 (Scarecrow-like protein 5/chitin-inducible gibberellin-responsive protein 2)	
Niben101Scf04090g02013.1			Unknown protein		
Niben101Scf09882g01018.1			Unknown protein		
Niben101Scf02563g02008.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR021820 (S-locus receptor kinase, C-terminal), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf01983g16001.1			Unknown protein		
Niben101Scf06716g00006.1	sp|Q95005|PSA7_CAEEL	****	Proteasome subunit alpha type-7	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf02293g03010.1	emb|CDX89334.1|	***-	BnaA01g15590D [Brassica napus]		
Niben101Scf09140g00005.1	AT5G06590.1	*-*-	unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=314		
Niben101Ctg12671g00001.1	AT2G18360.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=313	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00536g02004.1			Unknown protein		
Niben101Scf02211g04005.1	AT1G14820.3	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=252	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf01259g08014.1			Unknown protein		
Niben101Scf00821g14010.1	emb|CDY23728.1|	***-	BnaC04g43940D [Brassica napus]	IPR001202 (WW domain)	GO:0005515 (protein binding)
Niben101Scf19213g01005.1	sp|Q39262|ZFP3_ARATH	*-*-	Zinc finger protein 3	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00062g00001.1	sp|Q8S944|DRP3A_ARATH	***-	Dynamin-related protein 3A	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf00635g08007.1	AT1G26470.1	****	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages;	IPR012423 (Chromatin modification-related protein Eaf7/MRGBP)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043189 (H4/H2A histone acetyltransferase complex)
Niben101Scf00482g02005.1	AT1G07710.1	***-	Ankyrin repeat family protein LENGTH=543	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf13394g00009.1	dbj|BAD35335.1|	*-*-	loricrin-like [Oryza sativa Japonica Group]		
Niben101Scf11303g01019.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08195g04010.1	ref|XP_010103716.1|	*-*-	Sentrin-specific protease 1 [Morus notabilis] gb|EXB96858.1| Sentrin-specific protease 1 [Morus notabilis]		
Niben101Scf06376g01011.1	sp|Q9C707|BH083_ARATH	*-*-	Transcription factor bHLH83	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02128g00039.1	AT4G33500.1	*-*-	Protein phosphatase 2C family protein LENGTH=724	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf00457g01002.1	ref|XP_002518868.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF43401.1| conserved hypothetical protein [Ricinus communis]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf03819g03027.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01941g01028.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00056g02008.1	emb|CDY02050.1|	***-	BnaC04g14510D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf04968g00017.1	sp|Q9T0A0|LACS4_ARATH	*-*-	Long chain acyl-CoA synthetase 4	IPR000873 (AMP-dependent synthetase/ligase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf06426g00008.1			Unknown protein		
Niben101Scf07245g00011.1			Unknown protein		
Niben101Scf09640g01004.1	sp|Q9ZPI1|SYK_ARATH	*-*-	Lysine--tRNA ligase		
Niben101Scf02897g03005.1	AT3G09980.1	***-	Family of unknown function (DUF662) LENGTH=178	IPR007033 (Transcriptional activator, plants)	
Niben101Scf15739g00009.1	sp|P81394|MYB15_ANTMA	*-*-	Myb-related protein 315	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf17164g00029.1	AT5G14580.1	****	polyribonucleotide nucleotidyltransferase, putative LENGTH=991	IPR012162 (Polyribonucleotide nucleotidyltransferase), IPR027408 (PNPase/RNase PH domain)	GO:0000175 (3'-5'-exoribonuclease activity), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004654 (polyribonucleotide nucleotidyltransferase activity), GO:0006396 (RNA processing), GO:0006402 (mRNA catabolic process)
Niben101Scf03152g00026.1	sp|Q8W3L1|MFDR_ARATH	****	NADPH:adrenodoxin oxidoreductase, mitochondrial	IPR016040 (NAD(P)-binding domain), IPR021163 (Adrenodoxin-NADP+ reductase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01285g02007.1	gb|KEH34291.1|	***-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf01761g02001.1	AT3G27270.1	***-	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein LENGTH=249	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf15963g02012.1	ref|XP_003599949.1|	****	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf05552g10013.1	emb|CDY57158.1|	***-	BnaC05g50400D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf02656g03001.1	sp|A0A379|YCF2_COFAR	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	
Niben101Scf23254g00001.1	ref|XP_002869709.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH45968.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf33562g00001.1	sp|Q9SFX2|PUB43_ARATH	*-*-	U-box domain-containing protein 43	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf09555g00009.1	sp|A2BVI1|TAL_PROM5	***-	Transaldolase	IPR001585 (Transaldolase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf12670g00001.1	AT3G59520.1	***-	RHOMBOID-like protein 13 LENGTH=269	IPR022764 (Peptidase S54, rhomboid domain)	GO:0004252 (serine-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf02289g10030.1	AT3G57270.1	***-	beta-1,3-glucanase 1 LENGTH=340	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02074g04020.1	sp|Q1RIA4|CYB_RICBR	*-*-	Cytochrome b	IPR005797 (Cytochrome b/b6, N-terminal), IPR005798 (Cytochrome b/b6, C-terminal), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity)
Niben101Scf08411g00023.1	AT4G11270.1	*-*-	Transducin/WD40 repeat-like superfamily protein LENGTH=1446		
Niben101Scf00986g00001.1	AT4G36180.1	***-	Leucine-rich receptor-like protein kinase family protein LENGTH=1136	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf00597g08029.1	ref|XP_007050168.1|	****	Nuclear transport factor 2 family protein with RNA binding domain [Theobroma cacao] gb|EOX94325.1| Nuclear transport factor 2 family protein with RNA binding domain [Theobroma cacao]	IPR002075 (Nuclear transport factor 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf01463g01004.1	AT4G31320.1	***-	SAUR-like auxin-responsive protein family LENGTH=189	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf09010g01006.1	AT2G21300.1	***-	ATP binding microtubule motor family protein LENGTH=862	IPR021881 (Protein of unknown function DUF3490)	
Niben101Scf00538g03004.1	sp|Q652P9|GL93_ORYSJ	***-	Germin-like protein 9-3	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf04940g00009.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf11366g01003.1	ref|XP_002313513.1|	--*-	hydroxyproline-rich glycoprotein [Populus trichocarpa] gb|EEE87468.1| hydroxyproline-rich glycoprotein [Populus trichocarpa]		
Niben101Scf14771g01013.1	sp|Q9LU68|CIA2_ARATH	*-*-	Protein CHLOROPLAST IMPORT APPARATUS 2		
Niben101Scf10747g00008.1	emb|CDX74851.1|	***-	BnaA05g05970D [Brassica napus]		
Niben101Scf02275g01001.1	sp|O24160|TGA21_TOBAC	****	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07893g00003.1	sp|Q40593|VDE_TOBAC	****	Violaxanthin de-epoxidase, chloroplastic	IPR011038 (Calycin-like)	GO:0009507 (chloroplast), GO:0046422 (violaxanthin de-epoxidase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04835g00001.1	sp|Q9FFF9|APC1_ARATH	*-**	Anaphase-promoting complex subunit 1	IPR024990 (Anaphase-promoting complex subunit 1)	GO:0005680 (anaphase-promoting complex)
Niben101Scf01988g00011.1	AT5G27000.1	*-**	kinesin 4 LENGTH=987	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf06770g00034.1			Unknown protein		
Niben101Scf06162g00006.1	sp|P0C8K3|RPB2_ASFM2	*-**	DNA-directed RNA polymerase subunit 2	IPR007644 (RNA polymerase, beta subunit, protrusion), IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf02039g04010.1	sp|Q9SF32|IQD1_ARATH	*-*-	Protein IQ-DOMAIN 1	IPR005135 (Endonuclease/exonuclease/phosphatase), IPR025064 (Domain of unknown function DUF4005)	
Niben101Scf10556g00012.1	sp|Q9ZVL3|NFYC3_ARATH	--*-	Nuclear transcription factor Y subunit C-3	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf05516g04026.1	AT2G43040.1	***-	tetratricopeptide repeat (TPR)-containing protein LENGTH=704	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06378g04004.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf14577g01019.1			Unknown protein		
Niben101Scf25794g00004.1	AT5G47040.1	***-	lon protease 2 LENGTH=888	IPR015947 (PUA-like domain), IPR027065 (Lon protease), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004176 (ATP-dependent peptidase activity), GO:0004252 (serine-type endopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0006515 (misfolded or incompletely synthesized protein catabolic process), GO:0030163 (protein catabolic process)
Niben101Scf01220g04006.1			Unknown protein		
Niben101Scf05395g04025.1	sp|Q9SH60|PP103_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Ctg14056g00003.1	sp|Q9SXA1|P4KA1_ARATH	*-**	Phosphatidylinositol 4-kinase alpha 1	IPR015433 (Phosphatidylinositol Kinase), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0046854 (phosphatidylinositol phosphorylation), GO:0048015 (phosphatidylinositol-mediated signaling)
Niben101Scf01171g08002.1	AT3G24140.1	***-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=414	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05467g03004.1	sp|Q6DR10|TBL43_ARATH	***-	Protein trichome birefringence-like 43	IPR006130 (Aspartate/ornithine carbamoyltransferase), IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	GO:0006520 (cellular amino acid metabolic process), GO:0016597 (amino acid binding), GO:0016743 (carboxyl- or carbamoyltransferase activity)
Niben101Scf02270g02026.1	ref|XP_003607688.1|	*-*-	Pentatricopeptide repeat-containing protein [Medicago truncatula]	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03930g00019.1	sp|Q9XI36|MBD10_ARATH	*-**	Methyl-CpG-binding domain-containing protein 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf29722g00001.1	ref|XP_002518781.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF43706.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Ctg15674g00005.1	gb|EMT22539.1|	*-*-	Disease resistance protein RGA2 [Aegilops tauschii]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf05750g01009.1	sp|Q949M2|FABG4_BRANA	*-*-	3-oxoacyl-[acyl-carrier-protein] reductase 4	IPR016040 (NAD(P)-binding domain)	
Niben101Scf04592g00022.1	sp|Q06AT9|RBM4B_PIG	*-**	RNA-binding protein 4B	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Ctg12975g00002.1	sp|A1CUK5|NM111_ASPCL	*-**	Pro-apoptotic serine protease nma111	IPR001478 (PDZ domain)	GO:0005515 (protein binding)
Niben101Scf01402g00004.1	sp|Q7NZU6|MSBA_CHRVO	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf00769g00012.1	sp|Q9CAJ0|P2C16_ARATH	****	Protein phosphatase 2C 16	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf06467g04006.1	sp|Q5S1U6|IFRD1_PIG	***-	Interferon-related developmental regulator 1	IPR006921 (Interferon-related developmental regulator, C-terminal), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04739g01006.1	sp|P49351|FPPS1_LUPAL	***-	Farnesyl pyrophosphate synthase 1	IPR000092 (Polyprenyl synthetase)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf01350g03008.1			Unknown protein		
Niben101Scf25268g00001.1	sp|A7M962|PSBC_CUSRE	*-**	Photosystem II CP43 reaction center protein	IPR000932 (Photosystem antenna protein-like), IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast), GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf00167g00008.1	sp|P81394|MYB15_ANTMA	***-	Myb-related protein 315	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07778g02001.1	sp|O24145|4CL1_TOBAC	*-*-	4-coumarate--CoA ligase 1		
Niben101Scf03993g00008.1			Unknown protein		
Niben101Ctg13271g00001.1	sp|Q9SJF0|BSL2_ARATH	*-*-	Serine/threonine-protein phosphatase BSL2		
Niben101Scf04509g02007.1	ref|XP_002512211.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF50245.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01787g00038.1	gb|AFI44275.1|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Silene vulgaris]		
Niben101Scf02560g00010.1	sp|Q9FI00|MLO11_ARATH	*-*-	MLO-like protein 11	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf05535g03002.1	AT3G57050.1	****	cystathionine beta-lyase LENGTH=464	IPR000277 (Cys/Met metabolism, pyridoxal phosphate-dependent enzyme), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004121 (cystathionine beta-lyase activity), GO:0030170 (pyridoxal phosphate binding), GO:0071266 ('de novo' L-methionine biosynthetic process)
Niben101Scf00407g01011.1	sp|A1L272|S29A4_DANRE	****	Equilibrative nucleoside transporter 4	IPR002259 (Equilibrative nucleoside transporter)	GO:0005337 (nucleoside transmembrane transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf13595g00004.1	AT3G61850.4	****	Dof-type zinc finger DNA-binding family protein LENGTH=324	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03300g05013.1	sp|Q9FJ45|GDL83_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf09061g00001.1	ref|NP_001077727.1|	*-*-	embryo defective protein 1303 [Arabidopsis thaliana] gb|AEE33359.1| embryo defective protein 1303 [Arabidopsis thaliana]		
Niben101Ctg16053g00004.1	sp|Q67QB5|SAT_SYMTH	****	Sulfate adenylyltransferase	IPR002650 (Sulphate adenylyltransferase), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR015947 (PUA-like domain)	GO:0000103 (sulfate assimilation), GO:0004781 (sulfate adenylyltransferase (ATP) activity)
Niben101Scf04787g00013.1	AT5G42650.1	***-	allene oxide synthase LENGTH=518	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg12431g00004.1	sp|Q28C44|C19L2_XENTR	--*-	CWF19-like protein 2	IPR006768 (Cwf19-like, C-terminal domain-1)	
Niben101Scf01205g02001.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00247g05015.1	AT5G18650.1	****	CHY-type/CTCHY-type/RING-type Zinc finger protein LENGTH=267	IPR004039 (Rubredoxin-type fold), IPR008913 (Zinc finger, CHY-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017921 (Zinc finger, CTCHY-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf17695g00008.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf25021g00015.1	sp|Q9LQ16|PPR94_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08709g01006.1	AT2G39710.1	***-	Eukaryotic aspartyl protease family protein LENGTH=442	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04205g01010.1	gb|AFS35577.1|	****	salicylic acid methyl transferase [Nicotiana benthamiana]	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf06748g01001.1	sp|B2UE66|FTSH_RALPJ	****	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR005936 (Peptidase, FtsH), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf02864g11034.1	AT5G66230.1	*-*-	Chalcone-flavanone isomerase family protein LENGTH=329		
Niben101Scf02798g01016.1	sp|Q3SJQ4|NUOD_THIDA	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02750g04028.1	sp|Q9SD88|ASTER_ARATH	***-	Protein Asterix	IPR005351 (Uncharacterised protein family UPF0139)	
Niben101Scf00338g09003.1	sp|A4K2M3|STK4_PAPAN	*-**	Serine/threonine-protein kinase 4	IPR011009 (Protein kinase-like domain), IPR018222 (Nuclear transport factor 2, eukaryote)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06187g01028.1	sp|Q9UMN6|KMT2B_HUMAN	*-**	Histone-lysine N-methyltransferase 2B	IPR001214 (SET domain), IPR003105 (SRA-YDG), IPR003616 (Post-SET domain), IPR007728 (Pre-SET domain), IPR015947 (PUA-like domain), IPR025794 (Histone H3-K9 methyltransferase, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016571 (histone methylation), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0042393 (histone binding)
Niben101Scf03396g05012.1	AT1G65950.1	*-*-	Protein kinase superfamily protein LENGTH=551		
Niben101Scf10636g00010.1	ref|WP_026081804.1|	*-**	photosystem II oxygen evolving complex protein PsbP [Fischerella sp. PCC 9339]	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf04778g02015.1	gb|AAK13103.1|AC078839_19	*-*-	Helicase-like protein [Oryza sativa Japonica Group]		
Niben101Scf00219g02016.1	AT4G11800.1	***-	Calcineurin-like metallo-phosphoesterase superfamily protein LENGTH=1013	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf00307g04010.1	sp|Q8KCD8|DNAJ_CHLTE	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf01652g00014.1	sp|Q8LBL5|PRT1_ARATH	***-	E3 ubiquitin-protein ligase PRT1	IPR000433 (Zinc finger, ZZ-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03341g02012.1	AT5G17020.1	***-	exportin 1A LENGTH=1075	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf03978g02005.1			Unknown protein		
Niben101Scf01899g03003.1	AT1G30370.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=529	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf09417g01012.1	sp|Q3E9B5|PTR51_ARATH	***-	Protein NRT1/ PTR FAMILY 7.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf04973g01002.1	sp|Q9SYA6|RPBAL_ARATH	****	DNA-directed RNA polymerase subunit 10-like protein	IPR000268 (DNA-directed RNA polymerase, subunit N/Rpb10), IPR009057 (Homeodomain-like), IPR023580 (RNA polymerase subunit RPB10)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf11546g00008.1			Unknown protein		
Niben101Scf00990g02024.1			Unknown protein		
Niben101Scf01556g04011.1	sp|Q43748|NLTP_BETVU	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf04110g03002.1	sp|O23044|PER3_ARATH	*-**	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09325g03001.1			Unknown protein		
Niben101Scf01742g03005.1	gb|ABA94124.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant), IPR018289 (MULE transposase domain)	
Niben101Scf02427g00008.1	sp|Q9LHA1|C8D11_ARATH	*-*-	Cytochrome P450 81D11	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05747g00004.1	AT2G27260.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=243	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf00854g06020.1			Unknown protein		
Niben101Scf08691g00003.1	AT2G28260.1	****	cyclic nucleotide-gated channel 15 LENGTH=678	IPR005821 (Ion transport domain), IPR014710 (RmlC-like jelly roll fold)	GO:0005216 (ion channel activity), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00128g01011.1	sp|Q9FUR2|IP5P2_ARATH	*-**	Type I inositol 1,4,5-trisphosphate 5-phosphatase 2	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf01971g00006.1	AT3G05680.2	*-*-	embryo defective 2016 LENGTH=2152	IPR026736 (Protein virilizer)	
Niben101Scf02724g05002.1	sp|Q9SIQ7|CDPKO_ARATH	*-**	Calcium-dependent protein kinase 24	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09025g00004.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03592g02001.1	emb|CDY14195.1|	***-	BnaA08g13260D [Brassica napus]		
Niben101Scf05931g03004.1	AT4G22000.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=130		
Niben101Scf05961g01020.1	sp|Q9C9G6|U195A_ARATH	***-	MIP18 family protein	IPR002744 (Domain of unknown function DUF59)	
Niben101Scf06106g01007.1	AT2G16770.1	****	Basic-leucine zipper (bZIP) transcription factor family protein LENGTH=249	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02422g02021.1	sp|Q8GZD4|NAT3_ARATH	****	Nucleobase-ascorbate transporter 3	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01950g03003.1	sp|Q52RG7|SGPL_ORYSJ	*-*-	Sphingosine-1-phosphate lyase	IPR015424 (Pyridoxal phosphate-dependent transferase)	
Niben101Scf00471g02004.1	ref|XP_002523981.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF38349.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05516g02005.1	AT1G04020.1	***-	breast cancer associated RING 1 LENGTH=714	IPR001965 (Zinc finger, PHD-type), IPR011364 (Breast cancer type 1 susceptibility protein (BRCA1))	GO:0003677 (DNA binding), GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0008270 (zinc ion binding)
Niben101Scf02017g00001.1	sp|Q8L7S6|HEXO3_ARATH	****	Beta-hexosaminidase 3	IPR017853 (Glycoside hydrolase superfamily), IPR025705 (Beta-hexosaminidase), IPR029018 (Chitobiase/beta-hexosaminidase domain 2-like)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004563 (beta-N-acetylhexosaminidase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02228g00008.1	sp|Q9AS36|CCL11_ORYSJ	*-**	Cyclin-L1-1	IPR015429 (Cyclin C/H/T/L)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0006396 (RNA processing), GO:0019901 (protein kinase binding)
Niben101Scf04350g03007.1	sp|Q8K9H6|DEAD_BUCAP	*-**	ATP-dependent RNA helicase DeaD	IPR001650 (Helicase, C-terminal), IPR012541 (DBP10CT), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf08586g03006.1	AT5G19010.1	****	mitogen-activated protein kinase 16 LENGTH=567	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01371g07012.1	AT4G16580.1	***-	Protein phosphatase 2C family protein LENGTH=467	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf10852g03008.1	AT2G42940.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=257	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf12339g00001.1	sp|P83948|PME3_CITSI	****	Pectinesterase 3	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf11812g00007.1	gb|AES64298.2|	*-*-	inosine-uridine preferring nucleoside hydrolase [Medicago truncatula]	IPR023186 (Inosine/uridine-preferring nucleoside hydrolase)	
Niben101Scf06566g00016.1	gb|AAA80302.1|	*-*-	senescence-associated protein [Arabidopsis thaliana]	IPR001763 (Rhodanese-like domain)	
Niben101Scf06337g00005.1	sp|Q5XI55|NGLY1_RAT	--*-	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase		
Niben101Scf02605g07001.1	sp|O23320|CML8_ARATH	-**-	Calmodulin-like protein 8	IPR011992 (EF-hand domain pair)	
Niben101Scf01752g03008.1	sp|Q76CU2|PDR1_TOBAC	*-*-	Pleiotropic drug resistance protein 1	IPR003832 (Acid phosphatase/vanadium-dependent haloperoxidase-related)	
Niben101Scf04738g04007.1	sp|Q4JC46|PURT_SULAC	***-	Phosphoribosylglycinamide formyltransferase 2	IPR016185 (Pre-ATP-grasp domain), IPR016301 (Phosphoribosylaminoimidazole carboxylase)	GO:0003824 (catalytic activity), GO:0004638 (phosphoribosylaminoimidazole carboxylase activity), GO:0005524 (ATP binding), GO:0006189 ('de novo' IMP biosynthetic process), GO:0046872 (metal ion binding)
Niben101Scf10627g02001.1	sp|Q8NEE6|FXL13_HUMAN	*-*-	F-box/LRR-repeat protein 13	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf14311g01010.1	AT5G04250.1	***-	Cysteine proteinases superfamily protein LENGTH=345	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf05772g00004.1	sp|Q8VYE2|TIM50_ARATH	*-**	Mitochondrial import inner membrane translocase subunit TIM50	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain), IPR027111 (Mitochondrial import inner membrane translocase subunit Tim50)	GO:0005515 (protein binding), GO:0005743 (mitochondrial inner membrane), GO:0005744 (mitochondrial inner membrane presequence translocase complex), GO:0015031 (protein transport)
Niben101Scf08178g00008.1	AT1G62770.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=204	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00621g08006.1	sp|Q8VYR7|BOR1_ARATH	--*-	Boron transporter 1		
Niben101Scf00712g12002.1	sp|B9S2H4|Y232_RICCO	*-*-	UPF0392 protein RCOM_0530710		
Niben101Scf04864g03005.1	AT3G56760.1	****	Protein kinase superfamily protein LENGTH=577	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07008g03008.1	AT5G48335.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=114		
Niben101Scf04001g05001.1	emb|CDX90618.1|	***-	BnaA03g41630D [Brassica napus]		
Niben101Scf00503g01012.1	sp|Q84JH9|TBL25_ARATH	***-	Protein trichome birefringence-like 25	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf01888g09015.1	sp|Q8GX69|BGA16_ARATH	*-*-	Beta-galactosidase 16	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03507g05007.1	sp|Q9SB81|PER42_ARATH	****	Peroxidase 42	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00383g02001.1	gb|KEH43671.1|	--**	heavy metal transport/detoxification superfamily protein [Medicago truncatula]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf12715g00003.1	sp|Q70Z18|NAP1B_TOBAC	****	Nucleosome assembly protein 1;2	IPR002164 (Nucleosome assembly protein (NAP))	GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf08804g00003.1	AT5G23700.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=573		
Niben101Scf28267g00010.1	AT3G21760.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=485	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06172g00025.1	sp|P40973|PLY_LILLO	****	Pectate lyase	IPR007524 (Pectate lyase, N-terminal), IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	GO:0030570 (pectate lyase activity)
Niben101Scf03307g08008.1	sp|P46290|RL31_NICGU	***-	60S ribosomal protein L31	IPR000054 (Ribosomal protein L31e), IPR023621 (Ribosomal protein L31e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02451g10014.1	AT3G48670.1	***-	XH/XS domain-containing protein LENGTH=647	IPR005379 (Uncharacterised domain XH), IPR005380 (XS domain), IPR005381 (Zinc finger-XS domain)	GO:0031047 (gene silencing by RNA)
Niben101Scf03703g01005.1	gb|KHF34555.1|	***-	BadF/BadG/BcrA/BcrD ATPase family protein [Paenibacillus sp. P1XP2]	IPR002731 (ATPase, BadF/BadG/BcrA/BcrD type)	
Niben101Scf03985g04017.1	ref|WP_017069501.1|	--*-	alpha/beta hydrolase [Vibrio crassostreae]		
Niben101Scf03949g02005.1	sp|A1UQV9|SUCC_BARBK	--*-	Succinyl-CoA ligase [ADP-forming] subunit beta	IPR006927 (Protein of unknown function DUF639), IPR013815 (ATP-grasp fold, subdomain 1)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding)
Niben101Scf06778g07009.1			Unknown protein		
Niben101Scf02852g02007.1	sp|P12062|CB26_PETSP	***-	Chlorophyll a-b binding protein 37, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf13762g01047.1	AT5G54880.1	*-*-	DTW domain-containing protein LENGTH=394	IPR005636 (DTW)	
Niben101Scf08653g01007.1	sp|Q08211|DHX9_HUMAN	*-**	ATP-dependent RNA helicase A	IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014720 (Double-stranded RNA-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding)
Niben101Scf02793g24015.1	AT1G51130.1	****	Nse4, component of Smc5/6 DNA repair complex LENGTH=403	IPR014854 (Non-structural maintenance of chromosome element 4, C-terminal), IPR027786 (Nse4/EID family)	GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0030915 (Smc5-Smc6 complex)
Niben101Scf04830g00009.1	sp|Q9SUF9|PP305_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02021g01005.1	ref|WP_026735807.1|	***-	3-beta hydroxysteroid dehydrogenase [Fischerella sp. PCC 9605]	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf01596g12003.1	sp|O24146|4CL2_TOBAC	***-	4-coumarate--CoA ligase 2	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03930g02003.1	sp|Q949Z1|PGLR4_ARATH	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03227g03015.1	ref|XP_002535856.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf12297g00004.1	sp|Q54TV2|ABCG5_DICDI	*-*-	ABC transporter G family member 5	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00854g02048.1	ref|XP_003602255.1|	--*-	NAD(P)H-quinone oxidoreductase subunit 2 B [Medicago truncatula] gb|AES72506.1| transmembrane protein, putative [Medicago truncatula]		
Niben101Scf04290g03003.1	AT1G26850.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=616	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02461g02010.1	sp|Q2Z2E9|SCR_IPONI	*-*-	Protein SCARECROW	IPR005202 (Transcription factor GRAS)	
Niben101Scf12609g01009.1	sp|P86387|PLDA1_CARPA	****	Phospholipase D alpha 1	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0004630 (phospholipase D activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0046470 (phosphatidylcholine metabolic process)
Niben101Scf03245g04009.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]		
Niben101Scf07103g03017.1	ref|NP_001057128.1|	***-	product [Oryza sativa Japonica Group]	IPR008547 (Protein of unknown function DUF829, TMEM53), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf13429g02003.1	AT1G12100.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=132	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf10363g01012.1	sp|Q9C523|DIR19_ARATH	***-	Dirigent protein 19	IPR004265 (Plant disease resistance response protein)	
Niben101Scf01856g02005.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03710g06002.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01571g02002.1			Unknown protein		
Niben101Scf15962g00025.1	sp|Q9FE67|ERF80_ARATH	*-**	Ethylene-responsive transcription factor 9	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01409g04007.1	AT3G57620.1	***-	glyoxal oxidase-related protein LENGTH=547	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf01049g06005.1	AT1G49330.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=331		
Niben101Scf03607g01008.1	AT3G21760.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=485	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01154g17005.1	sp|Q71V09|H4_CAPAN	***-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	
Niben101Scf10688g00016.1	emb|CDX85164.1|	***-	BnaC07g07420D [Brassica napus]		
Niben101Scf07063g00003.1	gb|KEH21192.1|	***-	myosin heavy chain-like protein [Medicago truncatula]		
Niben101Scf07018g04004.1	AT5G05950.1	***-	maternal effect embryo arrest 60 LENGTH=175		
Niben101Scf01894g03001.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01718g05002.1	AT4G38500.1	***-	Protein of unknown function (DUF616) LENGTH=499	IPR006852 (Protein of unknown function DUF616)	
Niben101Scf26689g00002.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01226g02010.1	AT4G03500.1	*-*-	Ankyrin repeat family protein LENGTH=652	IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	
Niben101Scf03213g01003.1	sp|A9MH08|YCEA_SALAR	--*-	UPF0176 protein YceA	IPR001763 (Rhodanese-like domain)	
Niben101Scf11235g04013.1	sp|Q24K02|IDE_BOVIN	***-	Insulin-degrading enzyme	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0046872 (metal ion binding)
Niben101Scf05124g01018.1			Unknown protein		
Niben101Scf02798g00047.1			Unknown protein		
Niben101Scf00490g01035.1	sp|A8G7S7|GHRB_SERP5	****	Glyoxylate/hydroxypyruvate reductase B	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00306g01009.1	tpg|DAA58214.1|	*-*-	TPA: hypothetical protein ZEAMMB73_738830 [Zea mays]		
Niben101Scf09238g02007.1	sp|Q9BZV1|UBXN6_HUMAN	*-*-	UBX domain-containing protein 6	IPR018997 (PUB domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf18014g00013.1	sp|Q3UM29|COG7_MOUSE	****	Conserved oligomeric Golgi complex subunit 7	IPR019335 (Conserved oligomeric Golgi complex subunit 7)	GO:0006886 (intracellular protein transport), GO:0017119 (Golgi transport complex)
Niben101Scf03733g00005.1	emb|CDX88554.1|	*-*-	BnaC06g39980D [Brassica napus]		
Niben101Scf01061g00002.1	sp|Q6NKX5|POT1B_ARATH	*-*-	Protection of telomeres protein 1b	IPR012340 (Nucleic acid-binding, OB-fold), IPR028389 (Protection of telomeres protein 1)	GO:0000723 (telomere maintenance), GO:0000784 (nuclear chromosome, telomeric region), GO:0003677 (DNA binding), GO:0043047 (single-stranded telomeric DNA binding)
Niben101Scf09355g02009.1	sp|Q1DAT0|CLPP1_MYXXD	*-*-	ATP-dependent Clp protease proteolytic subunit 1	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03917g00003.1	sp|Q5PPX5|RN170_XENLA	--*-	E3 ubiquitin-protein ligase RNF170	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf03768g03010.1	gb|AAD02545.2|	--*-	PGPS/D3 [Petunia x hybrida]		
Niben101Scf09938g00026.1	sp|Q84UU9|TPS06_ARATH	*-**	Terpenoid synthase 6	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf11782g03013.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00561g00010.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08341g00018.1	sp|O08962|KCNH2_RAT	*-**	Potassium voltage-gated channel subfamily H member 2	IPR005821 (Ion transport domain), IPR013099 (Two pore domain potassium channel domain), IPR014710 (RmlC-like jelly roll fold), IPR020683 (Ankyrin repeat-containing domain), IPR021789 (Potassium channel, plant-type)	GO:0005216 (ion channel activity), GO:0005515 (protein binding), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf05931g00002.1	AT2G42850.1	***-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01866g06005.1	sp|Q2KIP8|HACD2_BOVIN	***-	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2	IPR007482 (Protein-tyrosine phosphatase-like, PTPLA)	
Niben101Scf00525g04006.1	AT5G22070.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=362	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf03998g00010.1	sp|Q940X7|RBX1A_ARATH	*-*-	RING-box protein 1a	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf03858g00018.1	sp|Q9LFC5|PP360_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf10713g00046.1	sp|Q7X923|SPT16_ORYSJ	***-	FACT complex subunit SPT16	IPR000994 (Peptidase M24, structural domain), IPR013719 (Domain of unknown function DUF1747), IPR013953 (FACT complex subunit Spt16p/Cdc68p), IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	
Niben101Scf05175g01002.1	AT3G25700.1	***-	Eukaryotic aspartyl protease family protein LENGTH=452	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05197g01010.1	sp|Q6CGD1|DBP4_YARLI	****	ATP-dependent RNA helicase DBP4	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf36478g00003.1	AT4G35690.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=284	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf05250g01011.1	emb|CDY32732.1|	--*-	BnaA02g07940D [Brassica napus]	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf06966g01012.1	AT1G74740.1	****	calcium-dependent protein kinase 30 LENGTH=541	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06094g08009.1	sp|P48241|LCB2_KLULA	*-*-	Serine palmitoyltransferase 2		
Niben101Scf02272g04018.1	sp|Q41435|IP2T_SOLTU	--**	Proteinase inhibitor type-2 T	IPR003465 (Proteinase inhibitor I20, Pin2)	GO:0004867 (serine-type endopeptidase inhibitor activity)
Niben101Scf05310g04009.1	sp|Q9EQC4|ELOV4_MOUSE	*-*-	Elongation of very long chain fatty acids protein 4	IPR002076 (ELO family)	GO:0016021 (integral component of membrane)
Niben101Ctg15550g00002.1	sp|Q9FEW9|OPR3_SOLLC	****	12-oxophytodienoate reductase 3	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02111g26009.1	sp|P81391|MYB05_ANTMA	*-*-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02114g02005.1	AT1G14780.1	***-	MAC/Perforin domain-containing protein LENGTH=627	IPR020864 (Membrane attack complex component/perforin (MACPF) domain)	
Niben101Scf03066g02005.1	sp|P49756|RBM25_HUMAN	*-**	RNA-binding protein 25	IPR002483 (PWI domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0006397 (mRNA processing)
Niben101Scf19911g00004.1	sp|Q9C744|AP3D_ARATH	*-*-	AP-3 complex subunit delta	IPR016024 (Armadillo-type fold), IPR017105 (Adaptor protein complex AP-3, delta subunit)	GO:0005488 (binding), GO:0005794 (Golgi apparatus), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf01771g00005.1	ref|NP_001274848.1|	*-**	plasma membrane ATPase 4-like [Solanum tuberosum] emb|CAA54045.1| H(+)-transporting ATPase [Solanum tuberosum]	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0016021 (integral component of membrane)
Niben101Scf01693g01004.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05931g00004.1	sp|B1MAH2|ARC_MYCA9	--*-	Proteasome-associated ATPase	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00247g03012.1	sp|Q54GD3|NPL4_DICDI	*-*-	Nuclear protein localization protein 4 homolog	IPR007717 (Nuclear pore localisation protein NPL4), IPR024682 (Nuclear pore localisation protein Npl4, ubiquitin-like domain), IPR029071 (Ubiquitin-related domain)	
Niben101Scf22564g00001.1	sp|Q9FVI2|ADF1_PETHY	****	Actin-depolymerizing factor 1	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf01341g01002.1	AT2G15220.1	***-	Plant basic secretory protein (BSP) family protein LENGTH=225	IPR007541 (Uncharacterised protein family, basic secretory protein)	
Niben101Scf02373g04027.1	sp|Q0B6M7|METE_BURCM	--*-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase		
Niben101Scf03016g00008.1	sp|Q0T7A9|AES_SHIF8	--*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf00348g06006.1	sp|O80434|LAC4_ARATH	***-	Laccase-4	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07350g00008.1	AT3G45300.1	****	isovaleryl-CoA-dehydrogenase LENGTH=409	IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain), IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal)	GO:0003995 (acyl-CoA dehydrogenase activity), GO:0008152 (metabolic process), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13429g02004.1	sp|P14009|14KD_DAUCA	***-	14 kDa proline-rich protein DC2.15	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf07438g04014.1	sp|Q2SMS4|METE_HAHCH	****	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	IPR006276 (Cobalamin-independent methionine synthase)	GO:0003871 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity), GO:0008270 (zinc ion binding), GO:0008652 (cellular amino acid biosynthetic process), GO:0009086 (methionine biosynthetic process)
Niben101Scf01697g18012.1	AT5G46640.1	*-**	AT hook motif DNA-binding family protein LENGTH=386	IPR005175 (Domain of unknown function DUF296), IPR020478 (AT hook-like)	GO:0003677 (DNA binding)
Niben101Scf04053g00001.1	AT4G36590.1	***-	MADS-box transcription factor family protein LENGTH=248	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01105g03002.1	AT2G38970.1	****	Zinc finger (C3HC4-type RING finger) family protein LENGTH=692	IPR002035 (von Willebrand factor, type A), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07664g01018.1	sp|Q9ASU1|DGAT2_ARATH	***-	Diacylglycerol O-acyltransferase 2	IPR007130 (Diacylglycerol acyltransferase)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf09238g02005.1	sp|Q9LK24|FB327_ARATH	*-*-	F-box protein	IPR001810 (F-box domain), IPR017900 (4Fe-4S ferredoxin, iron-sulphur binding, conserved site)	GO:0005515 (protein binding)
Niben101Scf01230g04020.1	sp|O48520|DPOD2_ARATH	*-*-	DNA polymerase delta small subunit	IPR024826 (DNA polymerase delta/II small subunit family)	
Niben101Scf00152g12001.1	AT1G75620.1	*-*-	glyoxal oxidase-related protein LENGTH=547	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf00611g07009.1	sp|Q6DJE4|CPSF5_XENLA	****	Cleavage and polyadenylation specificity factor subunit 5	IPR015797 (NUDIX hydrolase domain-like), IPR016706 (Cleavage/polyadenylation specificity factor subunit 5)	GO:0003729 (mRNA binding), GO:0005849 (mRNA cleavage factor complex), GO:0006378 (mRNA polyadenylation), GO:0016787 (hydrolase activity)
Niben101Scf00539g02002.1	sp|Q6DYE5|U496K_ARATH	***-	UPF0496 protein	IPR007749 (Protein of unknown function DUF677)	
Niben101Scf07066g00001.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02074g05008.1	ref|YP_002608396.1|	*-*-	orf86 [Vitis vinifera] emb|CAQ77655.1| orf86 [Vitis vinifera] gb|ACS15212.1| ORF86 [Vitis vinifera]		
Niben101Scf12609g01008.1	AT5G25360.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=169	IPR025124 (Domain of unknown function DUF4050)	
Niben101Scf01291g02016.1	sp|Q8S8W4|CYF_ATRBE	***-	Apocytochrome f	IPR002325 (Cytochrome f), IPR024094 (Cytochrome f large domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0015979 (photosynthesis), GO:0020037 (heme binding), GO:0031361 (integral component of thylakoid membrane)
Niben101Scf10468g00003.1	AT2G21860.1	*-*-	violaxanthin de-epoxidase-related LENGTH=522		
Niben101Scf12935g00046.1	sp|O24339|CATA_SOLAP	****	Catalase	IPR002226 (Catalase haem-binding site), IPR010582 (Catalase immune-responsive domain), IPR011614 (Catalase core domain), IPR018028 (Catalase, mono-functional, haem-containing), IPR020835 (Catalase-like domain), IPR024708 (Catalase active site)	GO:0004096 (catalase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07635g00035.1	sp|P46300|RS4_SOLTU	***-	40S ribosomal protein S4	IPR000876 (Ribosomal protein S4e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09268g00007.1	sp|P84977|GRP3_POPEU	*-**	Glycine-rich RNA-binding protein 3 (Fragments)	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00132g03021.1	sp|Q84TF5|RHA4A_ARATH	***-	RING-H2 zinc finger protein RHA4a		
Niben101Scf04090g02014.1	sp|B0R0I6|CHD8_DANRE	*-*-	Chromodomain-helicase-DNA-binding protein 8	IPR016197 (Chromo domain-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03645g04018.1	AT1G15390.1	****	peptide deformylase 1A LENGTH=269	IPR000181 (Formylmethionine deformylase), IPR023635 (Peptide deformylase)	GO:0005506 (iron ion binding), GO:0042586 (peptide deformylase activity)
Niben101Scf02033g00003.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00074g02023.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01128g00004.1	gb|AAY85179.1|	***-	fiber expressed protein [Gossypium hirsutum]	IPR008480 (Protein of unknown function DUF761, plant), IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf06674g03006.1	AT3G30300.1	***-	O-fucosyltransferase family protein LENGTH=677	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf01931g01003.1	sp|P29402|CALX1_ARATH	*-*-	Calnexin homolog 1	IPR001580 (Calreticulin/calnexin), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005783 (endoplasmic reticulum), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf09951g00001.1	AT3G56760.1	****	Protein kinase superfamily protein LENGTH=577	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg01319g00001.1	sp|P51109|DFRA_MEDSA	*-**	Dihydroflavonol-4-reductase	IPR016040 (NAD(P)-binding domain)	GO:0003854 (3-beta-hydroxy-delta5-steroid dehydrogenase activity), GO:0006694 (steroid biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf01481g02001.1	emb|CDY00678.1|	-**-	BnaC03g36620D [Brassica napus]		
Niben101Scf03998g00011.1	sp|Q940X7|RBX1A_ARATH	***-	RING-box protein 1a	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf06848g00010.1	sp|Q2JMY0|RS12_SYNJB	*-**	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf02182g14005.1	sp|Q5U508|TBCE_XENLA	***-	Tubulin-specific chaperone E	IPR001611 (Leucine-rich repeat), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf06901g01011.1	sp|B2RY50|ARMC4_MOUSE	--*-	Armadillo repeat-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00616g02008.1	AT3G61050.1	*-*-	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=510		
Niben101Scf00414g10003.1	sp|A7SXK3|TMED_NEMVE	***-	Transmembrane emp24 domain-containing protein	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf00856g00001.1	ref|NP_566073.1|	--*-	subunit 8 of mitochondrial complex II [Arabidopsis thaliana] Unknown protein [Arabidopsis thaliana] gb|AAD23054.1| expressed protein [Arabidopsis thaliana] gb|AAO00901.1| Unknown protein [Arabidopsis thaliana] gb|AEC10689.1| uncharacterized protein [Arabidopsis thaliana]		
Niben101Scf04529g01002.1	sp|O04893|AGLU_SPIOL	***-	Alpha-glucosidase	IPR000322 (Glycoside hydrolase family 31), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf18196g00009.1	sp|O16810|ORC1_DROME	--*-	Origin recognition complex subunit 1		
Niben101Scf00265g00001.1			Unknown protein		
Niben101Scf01917g13029.1	sp|Q43729|PER57_ARATH	****	Peroxidase 57	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01494g05019.1	AT1G10522.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=179		
Niben101Scf00854g00051.1	sp|Q0BQY6|ATPL_GRABC	*-**	ATP synthase subunit c	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf02793g24017.1	sp|Q2MIE9|RR3_SOLBU	*-*-	30S ribosomal protein S3, chloroplastic		
Niben101Scf05891g00006.1	emb|CDY58982.1|	***-	BnaA04g28680D [Brassica napus]	IPR007789 (Protein of unknown function DUF688)	
Niben101Scf11480g03009.1	AT1G56423.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=270		
Niben101Scf07054g01004.1	ref|WP_009786102.1|	****	polyamine ABC transporter substrate-binding protein [Lyngbya sp. PCC 8106] gb|EAW35355.1| periplasmic polyamine-binding protein of ABC transporter [Lyngbya sp. PCC 8106]	IPR001188 (Bacterial periplasmic spermidine/putrescine-binding protein)	GO:0015846 (polyamine transport), GO:0019808 (polyamine binding), GO:0042597 (periplasmic space)
Niben101Scf04457g04013.1	sp|B9DHT4|ARIA_ARATH	*-*-	ARM REPEAT PROTEIN INTERACTING WITH ABF2	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf08231g00009.1			Unknown protein	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf15131g00004.1	AT5G55350.1	*-*-	MBOAT (membrane bound O-acyl transferase) family protein LENGTH=345		
Niben101Scf10086g04003.1	sp|Q9VTG7|B3G2P_DROME	*-**	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P	IPR005027 (Glycosyl transferase, family 43), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0015018 (galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity), GO:0016020 (membrane)
Niben101Scf01970g06008.1	sp|Q9M9S0|ZHD4_ARATH	*-*-	Zinc-finger homeodomain protein 4	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain)	
Niben101Scf20389g00007.1	sp|Q94AH6|CUL1_ARATH	****	Cullin-1	IPR001373 (Cullin, N-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf01740g12005.1	sp|Q9AR19|GCN5_ARATH	*-*-	Histone acetyltransferase GCN5	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf04126g00013.1	AT1G24300.1	***-	GYF domain-containing protein LENGTH=1495	IPR003169 (GYF)	GO:0005515 (protein binding)
Niben101Scf00953g01003.1	emb|CDY48061.1|	*-*-	BnaA09g22970D [Brassica napus]		
Niben101Scf06650g03004.1	ref|NP_180763.1|	*-**	Acyl-CoA N-acyltransferases (NAT) superfamily protein [Arabidopsis thaliana] putative alanine acetyl transferase [Arabidopsis thaliana] gb|AAD15401.1| putative alanine acetyl transferase [Arabidopsis thaliana] gb|ABD60717.1| [Arabidopsis thaliana] gb|AEC08624.1| GCN5-related N-acetyltransferase-like protein [Arabidopsis thaliana]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf00870g07006.1	gb|AET01824.2|	*-*-	DNA-binding protein, putative [Medicago truncatula]		
Niben101Scf00212g02010.1	sp|P26446|PARP1_CHICK	*-*-	Poly [ADP-ribose] polymerase 1	IPR001510 (Zinc finger, PARP-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf04328g00048.1	ref|NP_063977.1|	*-*-	orf146 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] ref|YP_004222306.1| hypothetical protein BevumaM_p071 [Beta vulgaris subsp. maritima] dbj|BAA99289.1| orf146 [Beta vulgaris subsp. vulgaris] emb|CBJ14042.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBJ17533.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBL54124.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp. maritima]		
Niben101Scf18662g00010.1	AT4G38900.1	****	Basic-leucine zipper (bZIP) transcription factor family protein LENGTH=553	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg16216g00002.1	sp|Q8DMS3|RS21_THEEB	--*-	30S ribosomal protein S21	IPR001911 (Ribosomal protein S21)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01922g05005.1	sp|A8LJP9|CH60_DINSH	***-	60 kDa chaperonin	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding), GO:0042026 (protein refolding), GO:0044267 (cellular protein metabolic process)
Niben101Scf14012g00007.1	sp|Q9SS81|PP221_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02482g00001.1	AT5G58360.1	***-	ovate family protein 3 LENGTH=296	IPR006458 (Ovate  protein family, C-terminal), IPR025830 (DNA-binding domain, ovate family-like)	GO:0003677 (DNA binding)
Niben101Scf25265g00010.1	sp|O43314|VIP2_HUMAN	*-*-	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2	IPR029033 (Histidine phosphatase superfamily)	GO:0003993 (acid phosphatase activity)
Niben101Scf07030g04004.1	sp|P24521|ERG8_YEAST	***-	Phosphomevalonate kinase	IPR005916 (Phosphomevalonate kinase, eukaryotic)	GO:0005524 (ATP binding)
Niben101Scf06249g01003.1	AT1G18790.1	*-*-	RWP-RK domain-containing protein LENGTH=269	IPR003035 (RWP-RK domain)	
Niben101Scf05964g00001.1	sp|Q3KRG3|TSR2_DANRE	-**-	Pre-rRNA-processing protein TSR2 homolog	IPR019398 (Pre-rRNA-processing protein TSR2)	
Niben101Scf27283g00002.1	sp|Q0WKZ3|PP105_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01252g02002.1	sp|Q8NBP0|TTC13_HUMAN	--*-	Tetratricopeptide repeat protein 13	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf33628g00006.1	emb|CDY00054.1|	***-	BnaC09g02470D [Brassica napus]		
Niben101Scf16511g00009.1	sp|Q84UU9|TPS06_ARATH	*-**	Terpenoid synthase 6	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf10043g00020.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf05175g03010.1	AT5G08550.1	****	GC-rich sequence DNA-binding factor-like protein LENGTH=908	IPR012890 (GC-rich sequence DNA-binding factor)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05848g03014.1	AT5G16250.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=183		
Niben101Scf08242g01013.1	sp|Q6IQ97|RBM41_DANRE	*-**	RNA-binding protein 4.1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01785g05008.1	ref|WP_026721777.1|	***-	glycerol dehydrogenase [Fischerella sp. PCC 9431]	IPR021467 (Protein of unknown function DUF3119)	
Niben101Scf22811g00006.1	emb|CDY28050.1|	***-	BnaC05g44520D [Brassica napus]		
Niben101Scf04133g02020.1	sp|B0BZL2|ATPA1_ACAM1	*-**	ATP synthase subunit alpha 1	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf01169g04004.1	sp|B5XZE9|ATKB_KLEP3	*-*-	Potassium-transporting ATPase B chain	IPR008250 (P-type ATPase, A  domain)	GO:0000166 (nucleotide binding), GO:0046872 (metal ion binding)
Niben101Scf04763g00014.1	sp|Q9MAI5|ERF79_ARATH	*-**	Ethylene-responsive transcription factor 8	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02665g09009.1	sp|P36871|PGM1_HUMAN	*-*-	Phosphoglucomutase-1	IPR005843 (Alpha-D-phosphohexomutase, C-terminal), IPR016055 (Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III)	GO:0005975 (carbohydrate metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf01333g00011.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	
Niben101Scf00226g01007.1	ref|NP_001062726.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAF24640.1| [Oryza sativa Japonica Group]		
Niben101Ctg10638g00002.1	ref|XP_002530829.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF31542.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08365g01007.1	ref|XP_002997836.1|	--*-	helitron helicase-like protein [Phytophthora infestans T30-4] gb|EEY67811.1| helitron helicase-like protein [Phytophthora infestans T30-4]		
Niben101Scf02589g05006.1	emb|CDY17905.1|	*-*-	BnaC04g03140D [Brassica napus]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf10785g00002.1	gb|KEH21484.1|	***-	heparan-alpha-glucosaminide N-acetyltransferase-like protein [Medicago truncatula]	IPR012429 (Protein of unknown function DUF1624)	
Niben101Scf14513g00006.1	sp|Q9LX90|PABN3_ARATH	--*-	Polyadenylate-binding protein 3		
Niben101Scf18637g00015.1			Unknown protein		
Niben101Scf02346g05008.1	sp|Q9LVQ5|PP432_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Ctg13932g00004.1	sp|Q4VYC8|NSP1_MEDTR	*-*-	Nodulation-signaling pathway 1 protein	IPR005202 (Transcription factor GRAS), IPR030015 (Scarecrow-like protein 29/nodulation signalling pathway 1)	
Niben101Scf00326g01023.1	AT4G17240.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: Archae - 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). LENGTH=343		
Niben101Scf00821g12027.1	gb|ABV68563.1|	***-	A9 protein [Brassica napus]	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf01051g10027.1	sp|Q8RQD1|GLND_AZOBR	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf05278g04005.1	sp|A5YVF1|SGS3_SOLLC	*-*-	Protein SUPPRESSOR OF GENE SILENCING 3		
Niben101Scf03351g05014.1			Unknown protein		
Niben101Scf09603g00005.1	AT3G05625.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=257	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06392g02008.1	sp|Q9M8J3|FRS7_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 7	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf05146g03009.1	sp|B9SXY8|CSPLE_RICCO	***-	CASP-like protein 4D1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf05989g04012.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf01602g02002.1	sp|Q9R020|ZRAB2_MOUSE	*-**	Zinc finger Ran-binding domain-containing protein 2	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf10502g01002.1	sp|P51092|LDOX_PETHY	--*-	Leucoanthocyanidin dioxygenase	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf19266g01012.1	sp|Q8VZD4|DEG15_ARATH	*-*-	Glyoxysomal processing protease, glyoxysomal	IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity)
Niben101Scf00503g08009.1	sp|P42776|GBF3_ARATH	****	G-box-binding factor 3	IPR004827 (Basic-leucine zipper domain), IPR012900 (G-box binding, MFMR)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03300g05012.1	sp|Q9LZB2|GDL74_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf01556g04013.1	sp|Q8SPU8|DHRS4_BOVIN	***-	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	
Niben101Scf04040g07020.1	AT3G23470.1	*-*-	Cyclopropane-fatty-acyl-phospholipid synthase LENGTH=461	IPR003333 (Mycolic acid cyclopropane synthase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008610 (lipid biosynthetic process)
Niben101Scf03374g07001.1	gb|ABA94758.1|	--*-	hAT family dimerisation domain containing protein [Oryza sativa Japonica Group]	IPR003656 (Zinc finger, BED-type)	GO:0003677 (DNA binding)
Niben101Scf01010g00009.1	AT5G19760.1	***-	Mitochondrial substrate carrier family protein LENGTH=298	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf10434g00017.1	sp|Q9X0Z9|GATA_THEMA	***-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf01810g01003.1	emb|CDX94660.1|	***-	BnaC07g09980D [Brassica napus]		
Niben101Scf01862g01017.1	AT1G76760.1	***-	thioredoxin Y1 LENGTH=172	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00911g02014.1	AT1G06820.1	****	carotenoid isomerase LENGTH=595	IPR014101 (Carotene isomerase)	GO:0016117 (carotenoid biosynthetic process), GO:0016853 (isomerase activity)
Niben101Scf31637g00002.1	sp|Q9S9N1|HSP7E_ARATH	*-*-	Heat shock 70 kDa protein 5	IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf02073g08013.1	AT1G33810.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=138		
Niben101Scf13644g00018.1	sp|Q6FM63|ATG18_CANGA	--*-	Autophagy-related protein 18	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR022175 (Breast carcinoma amplified sequence 3)	GO:0005515 (protein binding)
Niben101Scf08884g00007.1	sp|Q5U3U0|PHYD1_DANRE	*-*-	Phytanoyl-CoA dioxygenase domain-containing protein 1	IPR008775 (Phytanoyl-CoA dioxygenase)	
Niben101Scf04699g01009.1	sp|Q1BV16|NUOD_BURCA	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03015g00001.1	sp|A4W916|NQOR_ENT38	***-	NAD(P)H dehydrogenase (quinone)	IPR029039 (Flavoprotein-like)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity)
Niben101Ctg11395g00002.1	ref|NP_001052962.1|	*-*-	product [Oryza sativa Japonica Group]	IPR025131 (Domain of unknown function DUF4057)	
Niben101Scf00439g04009.1	emb|CAD54298.1|	*-*-	bHLH transcription factor [Brassica napus]	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf19517g00014.1	sp|P0AB90|PUR8_ECOL6	*-**	Adenylosuccinate lyase	IPR013539 (Adenylosuccinate lyase PurB, C-terminal)	GO:0004018 (N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity), GO:0006188 (IMP biosynthetic process)
Niben101Scf00635g00005.1	AT2G03430.1	***-	Ankyrin repeat family protein LENGTH=240	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf03018g10004.1			Unknown protein		
Niben101Scf05688g05009.1	emb|CDX81765.1|	***-	BnaC08g38360D [Brassica napus]		
Niben101Scf00635g02004.1	sp|Q9FF10|HPSE1_ARATH	***-	Heparanase-like protein 1	IPR005199 (Glycoside hydrolase, family 79)	GO:0016020 (membrane), GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf00853g02002.1			Unknown protein		
Niben101Scf09082g00010.1	sp|Q9LZW2|OFP1_ARATH	*-*-	Transcription repressor OFP1	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf00087g05003.1	sp|Q96518|PER16_ARATH	****	Peroxidase 16	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03213g00002.1	sp|Q5D018|RBM8A_DANRE	*-**	RNA-binding protein 8A	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf09225g01005.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08195g07021.1	AT5G45660.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). LENGTH=226		
Niben101Scf02750g04026.1	AT5G07980.1	*-*-	dentin sialophosphoprotein-related LENGTH=1501		
Niben101Scf02658g05015.1			Unknown protein		
Niben101Scf04554g06015.1	sp|Q9M302|PP270_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08804g03001.1	sp|P93047|HMGB3_ARATH	*-*-	High mobility group B protein 3	IPR009071 (High mobility group box domain)	
Niben101Scf03422g04014.1	gb|AIE89794.1|	--*-	SQUAMOSA promoter binding protein-like 5, partial [Salvia miltiorrhiza]		
Niben101Scf07005g00026.1	ref|XP_002528742.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF33654.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07182g02011.1	sp|Q8NEZ4|KMT2C_HUMAN	*-**	Histone-lysine N-methyltransferase 2C	IPR001214 (SET domain), IPR003616 (Post-SET domain), IPR006560 (AWS domain), IPR025787 (Histone-lysine N-methyltransferase, SET2, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0018024 (histone-lysine N-methyltransferase activity)
Niben101Scf05391g00003.1	ref|YP_002720156.1|	*-*-	ORF126 [Jatropha curcas] ref|YP_002720173.1| ORF126 [Jatropha curcas] gb|ACN72735.1| ORF126 [Jatropha curcas] gb|ACN72751.1| ORF126 [Jatropha curcas]		
Niben101Scf08711g00009.1	AT3G61490.1	*-*-	Pectin lyase-like superfamily protein LENGTH=476	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02174g01004.1	sp|Q9SSR4|PPR77_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03693g07002.1	sp|Q09442|SF3B4_CAEEL	--*-	Splicing factor 3B subunit 4	IPR006529 (U2 snRNP auxilliary factor, large subunit, splicing factor), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0006397 (mRNA processing)
Niben101Scf05776g01036.1	gb|AAX67927.1|	*-*-	ORF16-lacZ fusion protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67]		
Niben101Scf01414g02022.1	sp|Q9BWF3|RBM4_HUMAN	*-**	RNA-binding protein 4	IPR007201 (RNA recognition motif 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07008g00005.1	sp|Q8LEM8|RL373_ARATH	*-*-	60S ribosomal protein L37-3	IPR001569 (Ribosomal protein L37e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08640g00002.1	sp|Q93VK8|RGF6_ARATH	--*-	Root meristem growth factor 6		
Niben101Scf03930g04002.1	ref|XP_002517598.1|	****	racemase and epimerase, acting on amino acids and derivatives, putative [Ricinus communis] gb|EEF44762.1| racemase and epimerase, acting on amino acids and derivatives, putative [Ricinus communis]	IPR015942 (Asp/Glu/hydantoin racemase)	GO:0006807 (nitrogen compound metabolic process), GO:0008152 (metabolic process), GO:0016855 (racemase and epimerase activity, acting on amino acids and derivatives), GO:0036361 (racemase activity, acting on amino acids and derivatives)
Niben101Scf01177g04032.1			Unknown protein		
Niben101Scf02262g01010.1	ref|XP_002530916.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF31465.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05279g01002.1	sp|P84977|GRP3_POPEU	*-**	Glycine-rich RNA-binding protein 3 (Fragments)	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00270g15015.1	sp|B1YI75|EFTS_EXIS2	--*-	Elongation factor Ts		
Niben101Scf02605g10008.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021820 (S-locus receptor kinase, C-terminal)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf06683g03002.1	AT4G17940.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=274	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf11649g01009.1			Unknown protein		
Niben101Scf03287g00018.1	AT2G25737.1	***-	Sulfite exporter TauE/SafE family protein LENGTH=476	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf17044g01003.1	gb|KEH20821.1|	*-*-	ATP/DNA-binding protein [Medicago truncatula]		
Niben101Scf06375g00008.1	sp|Q9FLG1|BXL4_ARATH	*-*-	Beta-D-xylosidase 4	IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00925g02002.1	sp|Q54WR5|CCD94_DICDI	*-*-	Coiled-coil domain-containing protein 94 homolog	IPR007590 (CWC16 protein)	
Niben101Ctg11840g00002.1	sp|Q8GUQ8|XDH1_ARATH	*-*-	Xanthine dehydrogenase 1	IPR000674 (Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead), IPR005107 (CO dehydrogenase flavoprotein, C-terminal)	
Niben101Scf00790g00006.1	sp|Q93XX4|C2D61_ARATH	***-	C2 domain-containing protein	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf03362g03006.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]		
Niben101Scf00769g00010.1	sp|A9ULB4|TRIA1_XENTR	*-*-	TP53-regulated inhibitor of apoptosis 1	IPR007918 (Mitochondrial distribution/morphology family 35/apoptosis)	
Niben101Scf01738g02005.1	AT3G09090.1	***-	defective in exine formation protein (DEX1) LENGTH=896	IPR013517 (FG-GAP repeat), IPR027295 (Quinonprotein alcohol dehydrogenase-like domain)	
Niben101Scf01702g01005.1	sp|Q43872|PER64_ARATH	****	Peroxidase 64	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05804g04004.1	sp|Q6PR54|RIF1_MOUSE	*-*-	Telomere-associated protein RIF1	IPR016024 (Armadillo-type fold), IPR022031 (Telomere-associated protein Rif1, N-terminal), IPR028566 (Rif1)	GO:0005488 (binding)
Niben101Scf09236g00001.1	sp|Q9SXS8|ERF3_TOBAC	****	Ethylene-responsive transcription factor 3	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09502g01007.1	ref|XP_007041919.1|	***-	Non-imprinted in Prader-Willi/Angelman syndrome region protein [Theobroma cacao] gb|EOX97750.1| Non-imprinted in Prader-Willi/Angelman syndrome region protein [Theobroma cacao]	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf04133g01029.1	sp|Q94A21|SPX4_ARATH	***-	SPX domain-containing protein 4	IPR004331 (SPX, N-terminal)	
Niben101Scf08196g01001.1	sp|P46417|GSTX3_SOYBN	***-	Glutathione S-transferase 3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf15541g00008.1	AT4G33400.1	***-	Vacuolar import/degradation, Vid27-related protein LENGTH=645	IPR013863 (Vacuolar import/degradation, Vid27-related), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04191g04029.1	AT3G54070.1	***-	Ankyrin repeat family protein LENGTH=574	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	
Niben101Scf11161g00006.1	sp|Q66I12|CCD47_DANRE	***-	Coiled-coil domain-containing protein 47	IPR012879 (Protein of unknown function DUF1682)	
Niben101Scf03085g04006.1	AT1G61790.1	***-	Oligosaccharyltransferase complex/magnesium transporter family protein LENGTH=346	IPR021149 (Oligosaccharyl transferase complex, subunit OST3/OST6)	
Niben101Scf03819g03026.1	gb|KEH21697.1|	***-	NLI interacting factor-like phosphatase [Medicago truncatula]	IPR004274 (NLI interacting factor)	GO:0005515 (protein binding)
Niben101Scf06376g01010.1	sp|Q6YW64|DRB4_ORYSJ	*-**	Double-stranded RNA-binding protein 4	IPR011907 (Ribonuclease III)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0016075 (rRNA catabolic process)
Niben101Scf01494g10004.1	sp|Q39264|ZFP5_ARATH	*-*-	Zinc finger protein 5	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01509g01011.1	sp|A8GKU9|GLGX_SERP5	***-	Glycogen debranching enzyme	IPR013780 (Glycosyl hydrolase, family 13, all-beta), IPR013783 (Immunoglobulin-like fold), IPR014756 (Immunoglobulin E-set), IPR015902 (Glycoside hydrolase, family 13), IPR017853 (Glycoside hydrolase superfamily)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0043169 (cation binding)
Niben101Scf00864g01012.1	AT4G00350.1	*-*-	MATE efflux family protein LENGTH=542	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02237g09007.1	sp|Q86IB5|TF2H3_DICDI	****	General transcription factor IIH subunit 3	IPR004600 (TFIIH subunit Tfb4/p34)	GO:0000439 (core TFIIH complex), GO:0006289 (nucleotide-excision repair), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00372g03014.1	ref|WP_032853289.1|	****	glycosyl hydrolase family 43 [Bacteroides sp. D2]	IPR006710 (Glycoside hydrolase, family 43), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf37527g00001.1	gb|AAB00098.1|	--*-	G-box binding factor, partial [Glycine max]		
Niben101Scf00305g01014.1	sp|Q6Z2G9|TLP5_ORYSJ	***-	Tubby-like F-box protein 5	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf02892g02007.1	AT1G09660.1	****	RNA-binding KH domain-containing protein LENGTH=298	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf06621g02016.1	ref|NP_850213.1|	*-**	Myb/SANT-like DNA-binding domain-containing protein [Arabidopsis thaliana] gb|AAL38805.1| unknown protein [Arabidopsis thaliana] gb|AAM20030.1| unknown protein [Arabidopsis thaliana] gb|AEC08851.1| GT-2-related protein [Arabidopsis thaliana]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf02078g08043.1	sp|Q6PGE4|ZF316_MOUSE	--*-	Zinc finger protein 316	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00234g00001.1	AT1G17745.2	****	D-3-phosphoglycerate dehydrogenase LENGTH=651	IPR006236 (D-3-phosphoglycerate dehydrogenase), IPR015878 (S-adenosyl-L-homocysteine hydrolase, NAD binding domain), IPR016040 (NAD(P)-binding domain), IPR029009 (Allosteric substrate binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1), IPR029753 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site)	GO:0004617 (phosphoglycerate dehydrogenase activity), GO:0006564 (L-serine biosynthetic process), GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02774g01005.1	AT5G17190.1	****	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf03945g00003.1	sp|Q8LG03|FB345_ARATH	*-*-	F-box protein		
Niben101Scf05330g00009.1	sp|B6EMN8|ASSY_ALISL	****	Argininosuccinate synthase	IPR001518 (Argininosuccinate synthase), IPR024074 (Argininosuccinate synthetase, catalytic/multimerisation domain body)	GO:0004055 (argininosuccinate synthase activity), GO:0005524 (ATP binding), GO:0006526 (arginine biosynthetic process)
Niben101Scf02142g02005.1	sp|O75400|PR40A_HUMAN	--*-	Pre-mRNA-processing factor 40 homolog A	IPR001202 (WW domain), IPR027237 (Pre-mRNA-processing protein PRP40)	GO:0005515 (protein binding)
Niben101Scf08984g00014.1			Unknown protein		
Niben101Scf00478g05007.1	sp|P0CP91|PPIL2_CRYNB	*-**	Peptidyl-prolyl cis-trans isomerase-like 2	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf08936g02005.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf03786g04006.1	AT5G55090.1	****	mitogen-activated protein kinase kinase kinase 15 LENGTH=448	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07115g00013.1	AT1G15120.2	****	Ubiquinol-cytochrome C reductase hinge protein LENGTH=166	IPR003422 (Cytochrome b-c1 complex, subunit 6), IPR023184 (Ubiquinol-cytochrome C reductase hinge domain)	GO:0006122 (mitochondrial electron transport, ubiquinol to cytochrome c), GO:0008121 (ubiquinol-cytochrome-c reductase activity)
Niben101Scf01988g00012.1	sp|Q9FMV0|FBL91_ARATH	***-	F-box/LRR-repeat protein	IPR013702 (FIST domain, N-terminal)	
Niben101Scf04926g03003.1	sp|Q7XJE6|MCA1_ARATH	***-	Metacaspase-1	IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf16898g00004.1	gb|AAC95212.1|	--*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf04665g02024.1	AT2G42260.1	*-*-	uv-b-insensitive 4 LENGTH=259		
Niben101Scf19779g00001.1	sp|P0CR79|HSE1_CRYNB	*-*-	Class E vacuolar protein-sorting machinery protein HSE1	IPR008942 (ENTH/VHS)	GO:0006886 (intracellular protein transport)
Niben101Ctg15705g00001.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02723g00006.1	AT4G31540.1	****	exocyst subunit exo70 family protein G1 LENGTH=687	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf17336g01004.1	sp|Q9C9V6|Y1790_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain), IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0009958 (positive gravitropism)
Niben101Scf00536g02003.1	sp|Q5NAI4|PLA5_ORYSJ	***-	Phospholipase A1-II 5	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf02044g05015.1	sp|Q9D967|MGDP1_MOUSE	****	Magnesium-dependent phosphatase 1	IPR010036 (Magnesium-dependent phosphatase-1, eukaryotic/arcaheal type), IPR023214 (HAD-like domain)	GO:0016791 (phosphatase activity)
Niben101Ctg15988g00001.1	ref|XP_002533586.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF28791.1| conserved hypothetical protein [Ricinus communis]		
Niben101Ctg15076g00003.1	sp|Q12870|TCF15_HUMAN	--*-	Transcription factor 15	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01369g02001.1	sp|Q9FLJ2|NC100_ARATH	*-*-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02497g02012.1	sp|A0QTF8|RMLD_MYCS2	***-	dTDP-4-dehydrorhamnose reductase	IPR005913 (dTDP-4-dehydrorhamnose reductase family), IPR029903 (RmlD-like substrate binding domain)	
Niben101Scf00202g06008.1	sp|Q75BM4|SFH5_ASHGO	*-*-	Phosphatidylinositol transfer protein SFH5	IPR001071 (Cellular retinaldehyde binding/alpha-tocopherol transport), IPR011074 (CRAL/TRIO, N-terminal domain)	GO:0005215 (transporter activity), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf02608g01013.1	ref|XP_007047099.1|	*-*-	Synechocystis YCF37 [Theobroma cacao] gb|EOX91256.1| Synechocystis YCF37 [Theobroma cacao]		
Niben101Scf00202g06009.1	sp|Q7ZWF4|RN145_DANRE	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04592g00021.1			Unknown protein		
Niben101Scf01897g08017.1	sp|Q8RX71|BAG4_ARATH	*-**	BAG family molecular chaperone regulator 4	IPR003103 (BAG domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf05938g01043.1	sp|P82381|ICI_LINUS	****	Proteinase inhibitor	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding)
Niben101Scf03309g03005.1	AT2G24650.1	*-**	DNA binding;DNA binding;sequence-specific DNA binding transcription factors LENGTH=1045	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf01512g06005.1	gb|AES77124.2|	*-*-	substrate carrier family protein [Medicago truncatula]		
Niben101Scf00482g02006.1	sp|Q9NZN8|CNOT2_HUMAN	*-**	CCR4-NOT transcription complex subunit 2	IPR007282 (NOT2/NOT3/NOT5)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf20768g00030.1	gb|ABD32938.2|	--*-	Pathogen-related protein, related [Medicago truncatula]		
Niben101Scf17336g01005.1			Unknown protein		
Niben101Scf06436g05001.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03350g09009.1	dbj|BAD38193.1|	*-**	mitochondrial transcription termination factor-like [Oryza sativa Japonica Group]	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00635g08008.1	sp|Q9LYZ9|PP362_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01237g05001.1	sp|F4IH21|TBL33_ARATH	***-	Protein trichome birefringence-like 33	IPR026057 (PC-Esterase)	
Niben101Scf10436g00001.1	sp|Q5KQN0|CAX2_ORYSJ	****	Vacuolar cation/proton exchanger 2	IPR004713 (Calcium/proton exchanger)	GO:0006812 (cation transport), GO:0006816 (calcium ion transport), GO:0008324 (cation transmembrane transporter activity), GO:0015369 (calcium:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf21489g00004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02740g09004.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf02565g02014.1	sp|Q9BWS9|CHID1_HUMAN	***-	Chitinase domain-containing protein 1	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08338g00001.1	sp|Q9SB81|PER42_ARATH	****	Peroxidase 42	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02011g08012.1	AT4G10930.1	***-	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=984		
Niben101Scf04556g04017.1	AT2G44280.1	***-	Major facilitator superfamily protein LENGTH=462	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf03856g04009.1	AT3G22270.1	***-	Topoisomerase II-associated protein PAT1 LENGTH=782		
Niben101Scf07123g00001.1	sp|Q56YA5|SGAT_ARATH	***-	Serine--glyoxylate aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase), IPR024169 (Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01787g00039.1	ref|XP_002534065.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF28320.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01301g04001.1	gb|KEH28378.1|	***-	telomerase activating protein Est1 [Medicago truncatula]	IPR011990 (Tetratricopeptide-like helical domain), IPR018834 (DNA/RNA-binding domain, Est1-type), IPR019458 (Telomerase activating protein Est1)	GO:0005515 (protein binding)
Niben101Scf02658g03019.1	sp|P48981|BGAL_MALDO	*-*-	Beta-galactosidase	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01154g17004.1	sp|Q7M443|CHIT2_TULBA	***-	Chitinase 2	IPR000677 (2S globulin), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01687g04014.1			Unknown protein		
Niben101Scf02656g03002.1	sp|A0A379|YCF2_COFAR	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	
Niben101Scf02793g27005.1	sp|Q94KU5|PAP3_BRACM	--*-	Plastid lipid-associated protein 3, chloroplastic		
Niben101Scf04656g01001.1	AT3G53260.1	*-**	phenylalanine ammonia-lyase 2 LENGTH=717	IPR001106 (Aromatic amino acid lyase), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf17695g00009.1	sp|Q04614|NU4LM_ARATH	--*-	NADH-ubiquinone oxidoreductase chain 4L		
Niben101Scf06533g00003.1	ref|XP_007039994.1|	***-	F5O11.10 isoform 3 [Theobroma cacao] gb|EOY24495.1| F5O11.10 isoform 3 [Theobroma cacao]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf04569g05003.1	sp|P46300|RS4_SOLTU	***-	40S ribosomal protein S4	IPR000876 (Ribosomal protein S4e)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09387g03009.1	AT3G60690.1	***-	SAUR-like auxin-responsive protein family LENGTH=170	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf09696g00036.1	sp|Q0BQE6|ATPA_GRABC	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00415g06001.1	sp|Q08069|RS8_MAIZE	***-	40S ribosomal protein S8	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03492g00004.1	AT5G57230.1	***-	Thioredoxin superfamily protein LENGTH=160	IPR012336 (Thioredoxin-like fold)	
Niben101Scf03768g03011.1	ref|WP_023508058.1|	****	membrane protease subunit stomatin/prohibitin-like protein [Rickettsia monacensis] emb|CDI29842.1| membrane protease subunit stomatin/prohibitin-like protein [Rickettsia monacensis IrR/Munich]	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Ctg06807g00002.1	AT5G57580.1	*-*-	Calmodulin-binding protein LENGTH=647	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf07402g01002.1	sp|Q6PH57|GBB1_DANRE	*-**	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf18014g00014.1	sp|Q9LRP1|NPS13_ARATH	***-	Novel plant SNARE 13	IPR000727 (Target SNARE coiled-coil domain), IPR005606 (Sec20)	GO:0005515 (protein binding)
Niben101Scf02427g03002.1	sp|Q99614|TTC1_HUMAN	*-*-	Tetratricopeptide repeat protein 1	IPR011990 (Tetratricopeptide-like helical domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf03396g05011.1	sp|Q8PU61|FPOJ_METMA	-***	F(420)H(2) dehydrogenase subunit J	IPR001457 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 6), IPR022801 (Ribosomal protein S4/S9)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01006g00001.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf03917g00004.1	AT4G33940.1	*-*-	RING/U-box superfamily protein LENGTH=262		
Niben101Scf05017g03007.1	sp|P92961|PROT1_ARATH	*-*-	Proline transporter 1	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf02937g09010.1	emb|CDY56759.1|	*-*-	BnaA06g40720D [Brassica napus]		
Niben101Scf01136g00003.1	sp|Q9LJK3|LAG12_ARATH	***-	LAG1 longevity assurance homolog 2	IPR016439 (Longevity assurance, LAG1/LAC1)	GO:0016021 (integral component of membrane)
Niben101Scf02479g02010.1	sp|P24636|TBB4_ARATH	*-*-	Tubulin beta-4 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf03530g00001.1	sp|Q5NE24|NSP2_MEDTR	***-	Nodulation-signaling pathway 2 protein	IPR005202 (Transcription factor GRAS), IPR030028 (Scarecrow-like protein 26/nodulation signalling pathway 2)	
Niben101Scf01899g03002.1	sp|A2WT95|PLA1_ORYSI	*-*-	Phospholipase A1-II 1	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf17051g00005.1	sp|Q42510|GNOM_ARATH	****	ARF guanine-nucleotide exchange factor GNOM	IPR000904 (Sec7 domain), IPR016024 (Armadillo-type fold), IPR023394 (Sec7 domain, alpha orthogonal bundle)	GO:0005086 (ARF guanyl-nucleotide exchange factor activity), GO:0005488 (binding), GO:0032012 (regulation of ARF protein signal transduction)
Niben101Scf03930g00018.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf02761g04008.1	sp|O49741|GATA2_ARATH	****	GATA transcription factor 2	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04078g01006.1	sp|P05336|ADH1_HORVU	***-	Alcohol dehydrogenase 1	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02270g02027.1	sp|Q9LKU8|PP401_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf14041g00004.1	gb|KEH35332.1|	*-*-	DnaJ domain protein [Medicago truncatula]		
Niben101Scf01220g04007.1	sp|Q7NFW6|PSAE_GLOVI	*-**	Photosystem I reaction center subunit IV	IPR003375 (Photosystem I PsaE, reaction centre subunit IV)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf03110g02006.1	sp|P48368|CRTE_CYAPA	***-	Geranylgeranyl diphosphate synthase	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf07606g00006.1	AT2G16250.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=915		
Niben101Scf03097g00002.1	ref|XP_007049404.1|	*-*-	Cell wall protein AWA1 isoform 2 [Theobroma cacao] gb|EOX93561.1| Cell wall protein AWA1 isoform 2 [Theobroma cacao]		
Niben101Scf24679g00016.1	AT4G16110.1	***-	response regulator 2 LENGTH=664	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily), IPR017053 (Response regulator, plant B-type)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00769g00011.1	sp|Q8VZH2|APM1_ARATH	***-	Aminopeptidase M1	IPR001930 (Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase), IPR024571 (ERAP1-like C-terminal domain)	GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity), GO:0008270 (zinc ion binding)
Niben101Scf01777g01004.1	sp|Q8L9S3|GRXC6_ARATH	***-	Glutaredoxin-C6	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01259g08015.1			Unknown protein		
Niben101Scf01655g04006.1	AT2G46220.1	***-	Uncharacterized conserved protein (DUF2358) LENGTH=241	IPR018790 (Protein of unknown function DUF2358)	
Niben101Scf00471g02003.1	AT4G19450.1	***-	Major facilitator superfamily protein LENGTH=572	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf03614g02001.1	AT2G28315.1	***-	Nucleotide/sugar transporter family protein LENGTH=342	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf02793g10007.1			Unknown protein		
Niben101Scf02831g08015.1	AT3G13870.1	****	Root hair defective 3 GTP-binding protein (RHD3) LENGTH=802	IPR008803 (RHD3/Sey1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf10031g08010.1	sp|P36397|ARF1_ARATH	*-*-	ADP-ribosylation factor 1	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf13137g00004.1	dbj|BAD35213.1|	*-**	helicase-like protein [Oryza sativa Japonica Group] dbj|BAD35649.1| helicase-like protein [Oryza sativa Japonica Group]	IPR010285 (DNA helicase Pif1 like), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf08357g04023.1	sp|Q2RAX3|CIPKX_ORYSJ	*-**	CBL-interacting protein kinase 33	IPR000449 (Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal), IPR011009 (Protein kinase-like domain), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08667g02001.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00157g00019.1	sp|Q9LJU7|PPA18_ARATH	****	Purple acid phosphatase 18	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf03693g05004.1	AT5G66740.1	***-	Protein of unknown function (DUF620) LENGTH=370	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf01538g01003.1	sp|Q9ZVJ6|ANXD4_ARATH	***-	Annexin D4	IPR018502 (Annexin repeat)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf01123g01008.1			Unknown protein		
Niben101Scf01687g07006.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00167g00009.1	sp|Q969E8|TSR2_HUMAN	*-*-	Pre-rRNA-processing protein TSR2 homolog	IPR019398 (Pre-rRNA-processing protein TSR2)	
Niben101Scf05304g03001.1	sp|Q8LLE5|FPP_SOLLC	*-*-	Filament-like plant protein	IPR008587 (Filament-like plant protein)	
Niben101Scf00885g12001.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf01409g01001.1	sp|Q5ZLH4|TM230_CHICK	***-	Transmembrane protein 230	IPR008590 (Protein of unknown function DUF872, transmembrane)	
Niben101Scf01037g04010.1	sp|B0B7L3|RNC_CHLT2	****	Ribonuclease 3	IPR000999 (Ribonuclease III domain)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0006396 (RNA processing)
Niben101Scf00904g00015.1	sp|Q9LPM9|BCAT6_ARATH	****	Branched-chain-amino-acid aminotransferase 6	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0004084 (branched-chain-amino-acid transaminase activity), GO:0008152 (metabolic process), GO:0009081 (branched-chain amino acid metabolic process)
Niben101Scf12372g02006.1	sp|Q9SFC6|GDIR_ARATH	*-**	Rho GDP-dissociation inhibitor 1	IPR000406 (RHO protein GDP dissociation inhibitor), IPR014756 (Immunoglobulin E-set)	GO:0005094 (Rho GDP-dissociation inhibitor activity), GO:0005737 (cytoplasm)
Niben101Scf01752g03007.1	sp|A0LGM1|RNC_SYNFM	*-**	Ribonuclease 3	IPR000999 (Ribonuclease III domain), IPR014720 (Double-stranded RNA-binding domain)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0006396 (RNA processing)
Niben101Scf04632g06002.1	ref|XP_002512616.1|	****	interferon-induced GTP-binding protein mx, putative [Ricinus communis] gb|EEF50068.1| interferon-induced GTP-binding protein mx, putative [Ricinus communis]	IPR000375 (Dynamin central domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf04787g00012.1	sp|Q9RKL4|PUR2_STRCO	****	Phosphoribosylamine--glycine ligase	IPR000115 (Phosphoribosylglycinamide synthetase), IPR016185 (Pre-ATP-grasp domain)	GO:0003824 (catalytic activity), GO:0004637 (phosphoribosylamine-glycine ligase activity), GO:0005524 (ATP binding), GO:0009113 (purine nucleobase biosynthetic process), GO:0046872 (metal ion binding)
Niben101Scf21459g00011.1	emb|CDP86079.1|	*-**	methyltransferase, , family protein [Mycobacterium farcinogenes]	IPR007213 (Leucine carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf07166g00010.1	AT1G70950.1	*-*-	TPX2 (targeting protein for Xklp2) protein family LENGTH=478		
Niben101Scf01041g02001.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf03436g00012.1	AT4G15050.1	***-	Protein of Unknown Function (DUF239) LENGTH=396	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf11490g00008.1	sp|P40998|THI4_SCHPO	***-	Thiamine thiazole synthase	IPR002922 (Thiazole biosynthetic enzyme Thi4 family)	
Niben101Scf00854g11021.1			Unknown protein		
Niben101Ctg04302g00001.1	sp|A7Y3D8|RR4_IPOPU	*-*-	30S ribosomal protein S4, chloroplastic	IPR001912 (Ribosomal protein S4/S9, N-terminal), IPR022801 (Ribosomal protein S4/S9)	GO:0005622 (intracellular), GO:0019843 (rRNA binding)
Niben101Scf00219g02015.1	AT1G47480.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=314	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf00369g21008.1	sp|Q9LRZ5|PLDP1_ARATH	*-*-	Phospholipase D p1	IPR015679 (Phospholipase D family)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00712g12003.1	sp|O95696|BRD1_HUMAN	*-*-	Bromodomain-containing protein 1	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf03431g00073.1			Unknown protein		
Niben101Scf02468g13008.1	AT4G32605.1	****	Mitochondrial glycoprotein family protein LENGTH=227	IPR003428 (Mitochondrial glycoprotein)	GO:0005759 (mitochondrial matrix)
Niben101Scf06318g02007.1	ref|XP_002881577.1|	*-**	DNA binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH57836.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02564g10009.1	sp|P92934|AAP6_ARATH	***-	Amino acid permease 6	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf03507g02019.1	sp|O48837|LRKS2_ARATH	--**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf31637g00003.1	sp|P05456|HSP70_TRYCR	*-*-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain)	
Niben101Scf11546g00009.1	sp|Q941R6|MLP31_ARATH	***-	MLP-like protein 31	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf14799g00001.1	ref|XP_007032661.1|	***-	T4P13.26 protein isoform 1 [Theobroma cacao] gb|EOY03587.1| T4P13.26 protein isoform 1 [Theobroma cacao]	IPR025638 (Protein of unknown function DUF4336)	
Niben101Scf00539g01011.1	sp|P92948|CDC5L_ARATH	***-	Cell division cycle 5-like protein	IPR009057 (Homeodomain-like), IPR021786 (Domain of unknown function DUF3351)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf09472g01003.1	ref|WP_010192692.1|	*-*-	L,D-transpeptidase [Bacillus sp. m3-13]	IPR018392 (LysM domain)	
Niben101Scf01469g01006.1	AT4G37040.1	****	methionine aminopeptidase 1D LENGTH=350	IPR000994 (Peptidase M24, structural domain), IPR002467 (Peptidase M24A, methionine aminopeptidase, subfamily 1)	GO:0004177 (aminopeptidase activity), GO:0006508 (proteolysis), GO:0008235 (metalloexopeptidase activity)
Niben101Scf08643g03023.1	sp|B4U7U4|FTSH_HYDS0	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR007330 (MIT), IPR015415 (Vps4 oligomerisation, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02427g00009.1	AT3G28740.1	***-	Cytochrome P450 superfamily protein LENGTH=509	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg15972g00001.1	sp|Q9LDE4|ERF83_ARATH	--**	Ethylene-responsive transcription factor 7	IPR001471 (AP2/ERF domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06518g02008.1	sp|Q9SND4|HEC2_ARATH	*-*-	Transcription factor HEC2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf06467g04005.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf00143g01010.1	gb|KEH42946.1|	*-*-	lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf04430g03014.1	ref|XP_002530805.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF31573.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02108g03013.1	sp|Q9LR47|IP5P3_ARATH	--*-	Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2		
Niben101Scf09284g01022.1	gb|KEH31575.1|	*-**	plant invertase/pectin methylesterase inhibitor [Medicago truncatula]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf04063g00015.1	sp|P60890|GLNA_STAAM	*-*-	Glutamine synthetase	IPR014746 (Glutamine synthetase/guanido kinase, catalytic domain)	GO:0003824 (catalytic activity), GO:0004356 (glutamate-ammonia ligase activity), GO:0006807 (nitrogen compound metabolic process)
Niben101Scf02133g10004.1	AT5G55850.2	***-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=130	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf03870g01002.1	AT5G14870.1	****	cyclic nucleotide-gated channel 18 LENGTH=706	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03772g04008.1	AT5G47380.1	***-	Protein of unknown function, DUF547 LENGTH=618	IPR006869 (Domain of unknown function DUF547), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	
Niben101Scf03710g06003.1	ref|NP_567509.2|	*-*-	O-fuc [Arabidopsis thaliana]	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf04350g03008.1	AT2G33820.1	***-	Mitochondrial substrate carrier family protein LENGTH=311	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf08869g01011.1	sp|P38415|LOXA_SOLLC	***-	Linoleate 9S-lipoxygenase A	IPR000907 (Lipoxygenase)	GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg15499g00003.1	ref|XP_003597166.1|	***-	Vicilin-like antimicrobial peptides 2-3 [Medicago truncatula]	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf02165g01006.1	AT5G45560.1	*-**	Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein LENGTH=719	IPR002913 (START domain), IPR009769 (Domain of unknown function DUF1336), IPR011993 (Pleckstrin homology-like domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf06752g00012.1	emb|CDX70508.1|	***-	BnaC03g05920D [Brassica napus]		
Niben101Scf12339g00002.1	AT3G14270.1	****	phosphatidylinositol-4-phosphate 5-kinase family protein LENGTH=1791	IPR002423 (Chaperonin Cpn60/TCP-1), IPR002498 (Phosphatidylinositol-4-phosphate 5-kinase, core), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027409 (GroEL-like apical domain), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0044267 (cellular protein metabolic process), GO:0046488 (phosphatidylinositol metabolic process), GO:0046872 (metal ion binding)
Niben101Scf10785g00003.1	sp|Q41638|XTHA_PHAAN	****	Xyloglucan endotransglucosylase/hydrolase protein A	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf07063g00002.1	ref|WP_009634071.1|	*-*-	Protein of unknown function (DUF3593) [Synechocystis sp. PCC 7509]	IPR021995 (Protein of unknown function DUF3593)	
Niben101Scf13533g01001.1	AT5G62940.1	****	Dof-type zinc finger DNA-binding family protein LENGTH=372	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07935g02001.1	sp|Q7T339|CHMP5_DANRE	***-	Charged multivesicular body protein 5	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf01082g02002.1	sp|Q9CZV8|FXL20_MOUSE	*-*-	F-box/LRR-repeat protein 20	IPR001810 (F-box domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf09612g00002.1	emb|CDY42363.1|	*-*-	BnaA09g15980D [Brassica napus]		
Niben101Scf05483g01006.1	gb|AES90030.2|	****	B3 DNA-binding domain protein [Medicago truncatula]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf05124g01019.1	sp|Q1RKE5|NUOM_RICBR	****	NADH-quinone oxidoreductase subunit M	IPR003918 (NADH:ubiquinone oxidoreductase)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf01070g02004.1			Unknown protein		
Niben101Scf00257g02010.1			Unknown protein		
Niben101Scf03507g05006.1	AT1G50660.1	***-	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=725		
Niben101Scf00640g01005.1	tpg|DAA49421.1|	***-	TPA: hypothetical protein ZEAMMB73_208487 [Zea mays]	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf07008g03009.1	AT4G12770.1	*-*-	Chaperone DnaJ-domain superfamily protein LENGTH=891	IPR001623 (DnaJ domain)	
Niben101Scf01061g00001.1	sp|P49211|RL321_ARATH	***-	60S ribosomal protein L32-1	IPR001515 (Ribosomal protein L32e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05434g02021.1	sp|Q9M9Q6|SCP50_ARATH	*-**	Serine carboxypeptidase-like 50	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf19975g01003.1	sp|Q6KAJ8|RL391_ORYSJ	***-	60S ribosomal protein L39-1	IPR000077 (Ribosomal protein L39e), IPR023626 (Ribosomal protein L39e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00748g00006.1	sp|P51419|RL273_ARATH	***-	60S ribosomal protein L27-3	IPR001141 (Ribosomal protein L27e), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01094g01012.1	sp|Q8LHP0|ELOF1_ORYSJ	*-*-	Transcription elongation factor 1 homolog		
Niben101Scf02740g00005.1	sp|Q9FKD7|SINL7_ARATH	--*-	E3 ubiquitin-protein ligase SINA-like 7		
Niben101Scf11653g01009.1	emb|CDY29863.1|	***-	BnaA03g48840D [Brassica napus]		
Niben101Scf10842g00003.1	sp|Q9FVL0|HBL1_MEDSA	***-	Non-symbiotic hemoglobin 1	IPR000971 (Globin), IPR009050 (Globin-like)	GO:0005506 (iron ion binding), GO:0015671 (oxygen transport), GO:0019825 (oxygen binding), GO:0020037 (heme binding)
Niben101Scf03731g02014.1	sp|Q6NRL1|AGAP1_XENLA	*-**	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf00929g02006.1	sp|P24986|COX2_BALPH	*-**	Cytochrome c oxidase subunit 2	IPR008972 (Cupredoxin)	GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0016020 (membrane)
Niben101Scf00693g02019.1	sp|B4F6X2|LYRM9_XENTR	-**-	LYR motif-containing protein 9	IPR008011 (Complex 1 LYR protein)	
Niben101Scf01596g12004.1	sp|Q39817|CALX_SOYBN	***-	Calnexin homolog	IPR001580 (Calreticulin/calnexin), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005783 (endoplasmic reticulum), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf12270g02001.1	sp|Q2NFZ5|RS11_METST	***-	30S ribosomal protein S11	IPR001971 (Ribosomal protein S11)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03964g04031.1	sp|Q6GN91|NT5D3_XENLA	***-	5'-nucleotidase domain-containing protein 3	IPR008380 (HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase), IPR023214 (HAD-like domain)	
Niben101Scf04457g04014.1	AT3G18490.1	***-	Eukaryotic aspartyl protease family protein LENGTH=500	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02724g05003.1	sp|Q9M101|CDPKN_ARATH	****	Calcium-dependent protein kinase 23	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05747g00003.1	sp|Q824L3|PYRE_CHLCV	*-**	Orotate phosphoribosyltransferase	IPR013785 (Aldolase-type TIM barrel), IPR014732 (Orotidine 5'-phosphate decarboxylase), IPR023031 (Orotate phosphoribosyltransferase), IPR029057 (Phosphoribosyltransferase-like)	GO:0003824 (catalytic activity), GO:0004588 (orotate phosphoribosyltransferase activity), GO:0004590 (orotidine-5'-phosphate decarboxylase activity), GO:0006207 ('de novo' pyrimidine nucleobase biosynthetic process), GO:0006221 (pyrimidine nucleotide biosynthetic process), GO:0008152 (metabolic process), GO:0009116 (nucleoside metabolic process), GO:0044205 ('de novo' UMP biosynthetic process)
Niben101Scf00971g00024.1	sp|P80386|AAKB1_RAT	--*-	5'-AMP-activated protein kinase subunit beta-1	IPR014756 (Immunoglobulin E-set), IPR030079 (Phosphoglucan phosphatase DSP4)	GO:0005982 (starch metabolic process), GO:0007623 (circadian rhythm), GO:0019203 (carbohydrate phosphatase activity)
Niben101Scf01927g01016.1	ref|WP_015118307.1|	****	glyc [Rivularia sp. PCC 7116] gb|AFY54732.1| glycosyl transferase [Rivularia sp. PCC 7116]	IPR025993 (Ceramide glucosyltransferase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf03227g03014.1	ref|XP_002524530.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF37857.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11766g00004.1	gb|AIO40073.1|	--*-	transglutaminase-like superfamily protein [Burkholderia cenocepacia]		
Niben101Scf02182g14004.1	sp|Q5U378|TBCE_DANRE	*-*-	Tubulin-specific chaperone E	IPR000938 (CAP Gly-rich domain)	
Niben101Scf01436g04001.1	sp|O49816|LEA1_CICAR	--*-	Late embryogenesis abundant protein 1		
Niben101Scf06524g02022.1	sp|O82302|P2C29_ARATH	*-*-	Protein phosphatase 2C 29	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf10688g00015.1	sp|Q9LVZ8|LOR12_ARATH	***-	Protein LURP-one-related 12	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf05787g02003.1			Unknown protein		
Niben101Scf00213g02004.1	sp|Q9LVQ5|PP432_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02757g04003.1	gb|ABV69696.1|	*-*-	4/1 protein [Nicotiana tabacum]		
Niben101Scf17164g00028.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR002902 (Gnk2-homologous domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07576g04011.1	emb|CDY37088.1|	***-	BnaA04g26660D [Brassica napus]	IPR008511 (Protein BYPASS-related)	
Niben101Scf15962g00024.1	AT1G01840.1	***-	unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=152		
Niben101Scf02730g00007.1	sp|Q4WHF8|REXO4_ASPFU	*-**	RNA exonuclease 4	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf02798g00046.1			Unknown protein		
Niben101Scf03510g04003.1	ref|XP_007047996.1|	-**-	Tether containing UBX domain for GLUT4, putative [Theobroma cacao] gb|EOX92153.1| Tether containing UBX domain for GLUT4, putative [Theobroma cacao]		
Niben101Scf07515g00004.1	AT4G32250.1	****	Protein kinase superfamily protein LENGTH=611	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00927g01006.1	sp|Q13748|TBA3C_HUMAN	*-*-	Tubulin alpha-3C/D chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf01718g05001.1	sp|Q48VL2|VATB_STRPM	****	V-type ATP synthase beta chain	IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR022879 (V-type ATP synthase regulatory subunit B/beta), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0015992 (proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0033180 (proton-transporting V-type ATPase, V1 domain), GO:0046034 (ATP metabolic process)
Niben101Scf00920g09025.1	sp|P49098|CYB5_TOBAC	***-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf01894g03002.1	ref|XP_007031684.1|	*-*-	Aceous RNase P 1 isoform 2 [Theobroma cacao] gb|EOY02610.1| Aceous RNase P 1 isoform 2 [Theobroma cacao]		
Niben101Scf00712g04012.1	gb|AHA85611.1|	*-*-	Ycf1, partial (chloroplast) [Solanum radicans]		
Niben101Scf00016g03004.1	sp|Q6GQV7|EDRF1_MOUSE	*-*-	Erythroid differentiation-related factor 1		
Niben101Scf03733g00006.1	AT1G79630.1	***-	Protein phosphatase 2C family protein LENGTH=504	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf02767g01015.1	sp|Q84LH3|WEX_ARATH	*-**	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf01970g01021.1	ref|XP_005651523.1|	*-**	iron-sulfur cluster assembly protein [Coccomyxa subellipsoidea C-169] gb|EIE26979.1| iron-sulfur cluster assembly protein [Coccomyxa subellipsoidea C-169]	IPR001075 (NIF system FeS cluster assembly, NifU, C-terminal)	GO:0005506 (iron ion binding), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf14625g01001.1	sp|Q96JG6|CC132_HUMAN	*-*-	Coiled-coil domain-containing protein 132	IPR019514 (Protein of unknown function DUF2451, C-terminal), IPR019515 (Vacuolar protein sorting-associated protein 54)	
Niben101Scf09238g02006.1	sp|Q94758|DYL1_SCHMA	***-	Dynein light chain	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Ctg15946g00001.1	sp|P35292|RAB17_MOUSE	--*-	Ras-related protein Rab-17	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf00490g01036.1	AT4G22890.1	***-	PGR5-LIKE A LENGTH=324		
Niben101Scf02622g10003.1	AT3G52990.1	*-**	Pyruvate kinase family protein LENGTH=527	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf14179g00003.1	sp|Q9C8P8|BH080_ARATH	*-*-	Transcription factor bHLH80	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05535g00013.1	AT5G04060.1	*-*-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=600	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf01033g01011.1	AT5G17190.1	****	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf09230g04007.1	sp|O64769|POT11_ARATH	*-**	Potassium transporter 11	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf05649g07008.1	sp|Q9UKZ1|CNO11_HUMAN	*-*-	CCR4-NOT transcription complex subunit 11	IPR019312 (Protein of unknown function DUF2363)	
Niben101Scf01848g00019.1			Unknown protein		
Niben101Scf10169g02006.1	sp|P24668|MPRD_MOUSE	--*-	Cation-dependent mannose-6-phosphate receptor	IPR018939 (Autophagy-related protein 27)	
Niben101Scf09217g00016.1	AT4G20840.1	*-**	FAD-binding Berberine family protein LENGTH=539	IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01341g01003.1	sp|Q7XR61|MTK1_ORYSJ	****	Methylthioribose kinase 1	IPR009212 (Methylthioribose kinase), IPR011009 (Protein kinase-like domain)	GO:0009086 (methionine biosynthetic process), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0046522 (S-methyl-5-thioribose kinase activity)
Niben101Scf01977g02007.1	sp|P60282|RPOB_AMBTC	*-**	DNA-directed RNA polymerase subunit beta	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf04174g01008.1	sp|P46417|GSTX3_SOYBN	***-	Glutathione S-transferase 3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf05931g00003.1	sp|Q0TTK8|FTSH_CLOP1	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf15885g00031.1	sp|Q0APY7|NUOD_MARMM	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05166g02005.1	AT5G62540.1	***-	ubiquitin-conjugating enzyme 3 LENGTH=150	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf00364g00002.1	sp|P22242|DRPE_CRAPL	***-	Desiccation-related protein PCC13-62		
Niben101Scf03128g05001.1	sp|Q54C24|VPS35_DICDI	***-	Vacuolar protein sorting-associated protein 35	IPR005378 (Vacuolar protein sorting-associated protein 35, Vps35)	GO:0015031 (protein transport), GO:0030904 (retromer complex), GO:0042147 (retrograde transport, endosome to Golgi)
Niben101Scf14771g01014.1	sp|Q9C9A9|COL7_ARATH	--*-	Zinc finger protein CONSTANS-LIKE 7		
Niben101Scf01139g02004.1	sp|Q7Z9L3|EXGA_ASPOR	*-*-	Glucan 1,3-beta-glucosidase A	IPR008999 (Actin cross-linking), IPR010431 (Fascin), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0007015 (actin filament organization), GO:0051015 (actin filament binding)
Niben101Scf01653g02013.1	sp|Q06721|RCA_ANASC	***-	Ribulose bisphosphate carboxylase/oxygenase activase	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf06162g00007.1	sp|P70700|RPA2_MOUSE	--**	DNA-directed RNA polymerase I subunit RPA2	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf02802g00009.1	sp|A3DNA4|RL3_STAMF	***-	50S ribosomal protein L3	IPR000597 (Ribosomal protein L3), IPR009000 (Translation protein, beta-barrel domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf11008g02003.1			Unknown protein		
Niben101Scf01718g06002.1	sp|Q8H0U4|TNPO1_ARATH	***-	Transportin-1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf00595g03001.1	AT4G25610.1	*-*-	C2H2-like zinc finger protein LENGTH=586	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf00927g13002.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf04899g04003.1	AT2G20670.1	***-	Protein of unknown function (DUF506) LENGTH=294	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf05071g00011.1	sp|Q7NFI1|NDHO_GLOVI	****	NAD(P)H-quinone oxidoreductase subunit O	IPR020905 (NAD(P)H-quinone oxidoreductase subunit O)	GO:0005886 (plasma membrane), GO:0016655 (oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf05474g00001.1	sp|Q9ZS51|PMP22_ARATH	****	Peroxisomal membrane protein PMP22	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf00426g00003.1	AT1G62420.1	***-	Protein of unknown function (DUF506) LENGTH=283	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf04494g00023.1	sp|B1JH01|GHRB_YERPY	****	Glyoxylate/hydroxypyruvate reductase B	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13843g00022.1	sp|Q6YC49|S35A3_BOVIN	****	UDP-N-acetylglucosamine transporter	IPR004689 (UDP-galactose transporter), IPR007271 (Nucleotide-sugar transporter)	GO:0000139 (Golgi membrane), GO:0005338 (nucleotide-sugar transmembrane transporter activity), GO:0005351 (sugar:proton symporter activity), GO:0008643 (carbohydrate transport), GO:0015780 (nucleotide-sugar transport), GO:0016021 (integral component of membrane)
Niben101Scf01109g00006.1	sp|Q9FJB8|GRF7_ARATH	*-*-	Growth-regulating factor 7	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf04133g02025.1	sp|A4QK95|RPOC2_BARVE	****	DNA-directed RNA polymerase subunit beta''	IPR007081 (RNA polymerase Rpb1, domain 5)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf03546g00006.1	emb|CDY50089.1|	***-	BnaC01g32640D [Brassica napus]	IPR021924 (Protein of unknown function DUF3537)	
Niben101Scf03016g00001.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf01291g02015.1	sp|Q3C1I9|CEMA_NICSY	*-**	Chloroplast envelope membrane protein	IPR004282 (Chloroplast envelope membrane protein, CemA)	GO:0016021 (integral component of membrane)
Niben101Scf04436g06001.1	ref|XP_002533342.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF29041.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf05476g01001.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10176g01002.1	sp|Q64VI7|DNAJ_BACFR	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf10050g01023.1	sp|Q6DFF9|MABP1_XENLA	--**	Mitogen-activated protein kinase-binding protein 1	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf07712g03002.1	gb|AAP53948.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]		
Niben101Scf07532g02018.1	ref|NP_001053436.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf00288g15003.1	sp|Q9MAT2|PPR10_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf18106g02002.1	ref|XP_003596412.1|	*-*-	Mitochondrial chaperone BCS1 [Medicago truncatula] gb|AES66663.1| P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]	IPR025753 (AAA-type ATPase, N-terminal domain)	
Niben101Scf02953g00003.1	ref|WP_019540988.1|	****	diphosphate--fructose-6-phosphate 1-phosphotransferase [Proteiniphilum acetatigenes]	IPR000023 (Phosphofructokinase domain), IPR011183 (Pyrophosphate-dependent phosphofructokinase PfpB), IPR022953 (Phosphofructokinase)	GO:0003872 (6-phosphofructokinase activity), GO:0005524 (ATP binding), GO:0006002 (fructose 6-phosphate metabolic process), GO:0006096 (glycolytic process), GO:0047334 (diphosphate-fructose-6-phosphate 1-phosphotransferase activity)
Niben101Scf18660g00004.1	gb|AIE42546.1|	*-*-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf11707g00001.1	sp|B7LSE2|GLGX_ESCF3	*-*-	Glycogen debranching enzyme	IPR013780 (Glycosyl hydrolase, family 13, all-beta), IPR015902 (Glycoside hydrolase, family 13), IPR017853 (Glycoside hydrolase superfamily)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0043169 (cation binding)
Niben101Scf03674g01009.1	sp|Q9LZS7|GDL71_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf03205g01005.1	AT3G13600.1	***-	calmodulin-binding family protein LENGTH=605		
Niben101Scf01569g02006.1	sp|P10973|NLTPA_RICCO	***-	Non-specific lipid-transfer protein A	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf18328g00009.1	sp|Q5XIU2|ZN143_RAT	*-*-	Zinc finger protein 143	IPR003347 (JmjC domain), IPR003349 (JmjN domain), IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf03263g00008.1	sp|Q93XY5|TET18_ARATH	***-	Tetraspanin-18	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf04099g03003.1	sp|P74227|EFTU_SYNY3	****	Elongation factor Tu	IPR004541 (Translation elongation factor EFTu/EF1A, bacterial/organelle), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006414 (translational elongation)
Niben101Scf02760g02004.1	gb|AAU90304.1|	--*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf21817g00005.1	sp|Q9SF32|IQD1_ARATH	***-	Protein IQ-DOMAIN 1	IPR025064 (Domain of unknown function DUF4005)	
Niben101Scf06235g03014.1	AT1G56500.1	****	haloacid dehalogenase-like hydrolase family protein LENGTH=1055	IPR006439 (HAD hydrolase, subfamily IA), IPR011042 (Six-bladed beta-propeller, TolB-like), IPR012336 (Thioredoxin-like fold), IPR023214 (HAD-like domain)	GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01911g15014.1	sp|Q09466|WHT3_CAEEL	*-**	ABC transporter ATP-binding protein/permease wht-3	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf12623g04003.1	sp|P41644|PSBD_PINTH	*-**	Photosystem II D2 protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf07321g00014.1	ref|XP_007029537.1|	*-*-	TMV resistance protein N, putative [Theobroma cacao] gb|EOY10039.1| TMV resistance protein N, putative [Theobroma cacao]	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02316g00016.1	AT2G30460.1	***-	Nucleotide/sugar transporter family protein LENGTH=353		
Niben101Scf02786g01009.1	sp|Q8IWF6|DEN6A_HUMAN	*-*-	Protein DENND6A	IPR024224 (DENND6)	
Niben101Scf03362g03005.1	gb|AAC49408.1|	*-*-	PRF [Solanum lycopersicum]		
Niben101Scf00168g07004.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf16024g00020.1	AT5G57330.1	***-	Galactose mutarotase-like superfamily protein LENGTH=312	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf10228g00007.1	sp|Q9ZUU0|WRK44_ARATH	****	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02577g03014.1	sp|Q9C5I3|ERF76_ARATH	--**	Ethylene-responsive transcription factor 11	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00875g07012.1	ref|XP_002524585.1|	*-**	nucleic acid binding protein, putative [Ricinus communis] gb|EEF37793.1| nucleic acid binding protein, putative [Ricinus communis]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf06628g00016.1	sp|A4HYT9|MTND_LEIIN	--*-	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase		
Niben101Scf00369g21005.1	sp|Q6NPT8|PP2B1_ARATH	***-	F-box protein PP2-B1	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf17044g01002.1	gb|KEH20821.1|	***-	ATP/DNA-binding protein [Medicago truncatula]	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf13438g00004.1	sp|Q9H6P5|TASP1_HUMAN	*-*-	Threonine aspartase 1	IPR000246 (Peptidase T2, asparaginase 2), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0016787 (hydrolase activity)
Niben101Scf01855g02015.1	gb|AAY53482.1|	*-*-	resistance protein R1 [Solanum demissum]	IPR002182 (NB-ARC), IPR021929 (Late blight resistance protein R1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf12469g01005.1	gb|KFX28119.1|	--*-	membrane protein [Ralstonia solanacearum]		
Niben101Scf10389g01005.1	AT3G44730.1	*-**	kinesin-like protein 1 LENGTH=1087	IPR001715 (Calponin homology domain), IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf10300g00007.1	gb|AAC72803.1|	--*-	ORF2 [Mus musculus domesticus]		
Niben101Scf00177g02008.1			Unknown protein		
Niben101Scf03255g02009.1	sp|Q8TBZ6|TM10A_HUMAN	*-**	tRNA methyltransferase 10 homolog A	IPR007356 (tRNA (guanine-N1-)-methyltransferase, eukaryotic), IPR016009 (tRNA methyltransferase TRMD/TRM10-type domain)	GO:0008168 (methyltransferase activity)
Niben101Scf02145g07011.1	AT1G62305.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=378	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf00366g01013.1	AT1G67320.3	*-*-	DNA primase, large subunit family LENGTH=490		
Niben101Scf00317g11003.1			Unknown protein		
Niben101Scf02291g03004.1	sp|P11435|CPPM_STRHY	***-	Carboxyvinyl-carboxyphosphonate phosphorylmutase	IPR015813 (Pyruvate/Phosphoenolpyruvate kinase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf08470g06013.1	sp|Q99575|POP1_HUMAN	*-*-	Ribonucleases P/MRP protein subunit POP1	IPR009723 (Ribonuclease P/MRP, subunit POP1)	GO:0001682 (tRNA 5'-leader removal), GO:0004526 (ribonuclease P activity)
Niben101Scf00168g10016.1	sp|Q9SGP2|HSL1_ARATH	--**	Receptor-like protein kinase HSL1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04083g04004.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf04037g01011.1	sp|Q9CXL1|TM50A_MOUSE	-**-	Transmembrane protein 50A	IPR007919 (Uncharacterised protein family UPF0220)	
Niben101Scf05962g04013.1	sp|O65390|APA1_ARATH	****	Aspartic proteinase A1	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00416g00008.1	AT2G46890.1	*-*-	Protein of unknown function (DUF1295) LENGTH=322	IPR010721 (Protein of unknown function DUF1295)	
Niben101Scf09512g04027.1	gb|KEH26288.1|	*-*-	heavy metal-associated domain protein [Medicago truncatula]		
Niben101Scf02280g04013.1	sp|P44856|DHNA_HAEIN	***-	NADH dehydrogenase	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00693g01010.1	sp|P86182|CCD22_RAT	*-*-	Coiled-coil domain-containing protein 22	IPR008530 (Protein of unknown function DUF812)	
Niben101Scf00123g04001.1	AT2G40095.1	*-*-	Alpha/beta hydrolase related protein LENGTH=209	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf09555g00006.1	sp|O64896|TPPA_ARATH	****	Trehalose-phosphate phosphatase A	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf00770g01006.1	ref|XP_002524347.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38087.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00288g17013.1	ref|XP_007016959.1|	*-**	Rab3 GTPase-activating protein catalytic subunit isoform 2 [Theobroma cacao] gb|EOY34578.1| Rab3 GTPase-activating protein catalytic subunit isoform 2 [Theobroma cacao]	IPR026147 (Rab3 GTPase-activating protein catalytic subunit)	GO:0005097 (Rab GTPase activator activity)
Niben101Scf02074g05003.1	sp|Q9G3S4|CYB_PTESA	*-*-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity)
Niben101Scf04119g00003.1	sp|A4IFM3|DR9C7_BOVIN	****	Short-chain dehydrogenase/reductase family 9C member 7	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf08047g01004.1	sp|Q24UT2|SYA_DESHY	*-**	Alanine--tRNA ligase	IPR018165 (Alanyl-tRNA synthetase, class IIc, core domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004813 (alanine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006419 (alanyl-tRNA aminoacylation)
Niben101Scf05177g02026.1	sp|P93194|RPK1_IPONI	****	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03021g03030.1	AT1G48405.1	***-	Kinase interacting (KIP1-like) family protein LENGTH=297	IPR011684 (KIP1-like)	
Niben101Scf09998g01010.1	sp|Q91790|DUS1A_XENLA	--*-	Dual specificity protein phosphatase 1-A	IPR029021 (Protein-tyrosine phosphatase-like)	
Niben101Scf04328g00043.1	sp|P06408|PSAB_MARPO	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf04296g00015.1	AT5G14860.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=492	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00109g02005.1	sp|Q39263|ZFP4_ARATH	*-*-	Zinc finger protein 4	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf07170g01005.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf15541g00007.1	sp|O48724|WEB1_ARATH	***-	Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1	IPR008545 (WEB family)	
Niben101Scf10713g00001.1	AT4G09900.1	***-	methyl esterase 12 LENGTH=349	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05823g02007.1	sp|O13813|TOM22_SCHPO	--*-	Mitochondrial import receptor subunit tom22	IPR017411 (Mitochondrial outer membrane translocase complex, subunit Tom22, plant)	
Niben101Scf00388g05009.1	sp|Q9ZQR4|Y2452_ARATH	*-*-	DUF21 domain-containing protein	IPR002550 (Domain of unknown function DUF21)	
Niben101Scf00753g02013.1	dbj|BAB64937.1|	--*-	TdcA1-ORF1-ORF2 [Daucus carota]		
Niben101Scf10910g00006.1	AT1G26190.1	*-**	Phosphoribulokinase / Uridine kinase family LENGTH=674	IPR006082 (Phosphoribulokinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0008152 (metabolic process), GO:0008974 (phosphoribulokinase activity), GO:0016301 (kinase activity)
Niben101Scf03215g02001.1	sp|P35279|RAB6A_MOUSE	***-	Ras-related protein Rab-6A	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf07070g00004.1	gb|KEH37082.1|	*-*-	S-adenosyl-L-methionine-dependent methyltransferase, putative [Medicago truncatula]	IPR003788 (Putative S-adenosyl-L-methionine-dependent methyltransferase MidA), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf04078g01002.1	ref|XP_007048083.1|	***-	Translation initiation factor IF-2, putative isoform 1 [Theobroma cacao] gb|EOX92240.1| Translation initiation factor IF-2, putative isoform 1 [Theobroma cacao]		
Niben101Scf00773g06004.1	sp|Q9FHW9|GDL90_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf05901g01008.1	AT4G15755.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=289	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf10466g00015.1	sp|O23614|CTPA2_ARATH	--*-	Carboxyl-terminal-processing peptidase 2, chloroplastic		
Niben101Scf01750g10002.1	sp|Q8S8U1|YCF2B_ATRBE	*-*-	Protein Ycf2 B	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf02775g00003.1	sp|O80338|EF101_ARATH	****	Ethylene-responsive transcription factor 2	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00177g11013.1	AT3G53130.1	***-	Cytochrome P450 superfamily protein LENGTH=539	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00860g01011.1	sp|Q5QA94|ATG18_PICAN	*-*-	Autophagy-related protein 18	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00187g02015.1	sp|A1WXZ3|RLMN_HALHL	*-**	Dual-specificity RNA methyltransferase RlmN	IPR004383 (Ribosomal RNA large subunit methyltransferase RlmN/Cfr)	GO:0005737 (cytoplasm), GO:0006364 (rRNA processing), GO:0008173 (RNA methyltransferase activity)
Niben101Scf00994g00001.1	sp|P58050|C71BD_ARATH	***-	Cytochrome P450 71B13	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02425g02017.1	gb|KEH37202.1|	*-*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf07584g00003.1	emb|CDY00331.1|	*-*-	BnaA06g22320D [Brassica napus]		
Niben101Scf02734g01027.1	ref|NP_004308.2|	****	ATPase ASNA1 [Homo sapiens] ref|NP_001092334.1| ATPase ASNA1 [B product [Homo sapiens] tpg|DAA28025.1| TPA: arsA arsenite transporter, ATP-binding, homolog 1 [Bos taurus] gb|ADZ15365.1| arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) [synthetic construct] gb|EHH29684.1| ATPase ASNA1 [Macaca mulatta] gb|EHH59253.1| ATPase ASNA1 [Macaca fascicularis] gb|ELK06712.1| ATPase ASNA1 [Pteropus alecto] gb|ELR52911.1| ATPase ASNA1 [Bos mutus] gb|AHJ25817.1| arsa arsenite transporter ATP-binding [Panthera tigris altaica] gb|AIC48309.1| ASNA1, partial [synthetic construct]	IPR016300 (Arsenical pump ATPase, ArsA/GET3), IPR025723 (Anion-transporting ATPase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf08233g00019.1	sp|Q9LUQ6|RL192_ARATH	***-	60S ribosomal protein L19-2	IPR000196 (Ribosomal protein L19/L19e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04526g00020.1	sp|Q8BVF2|PDCL3_MOUSE	*-*-	Phosducin-like protein 3	IPR012336 (Thioredoxin-like fold)	
Niben101Ctg14932g00002.1	ref|NP_001237169.1|	***-	seed maturation protein PM41 [Glycine max] seed maturation protein PM41 [Glycine max]		
Niben101Scf07942g02002.1	sp|Q9FYQ8|TMN11_ARATH	***-	Transmembrane 9 superfamily member 11	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf01917g13024.1	AT1G09910.1	***-	Rhamnogalacturonate lyase family protein LENGTH=675	IPR008979 (Galactose-binding domain-like), IPR010325 (Rhamnogalacturonate lyase), IPR011013 (Galactose mutarotase-like domain), IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf02569g02013.1	sp|Q9SHV1|GLR22_ARATH	****	Glutamate receptor 2.2	IPR001320 (Ionotropic glutamate receptor), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf00577g06005.1			Unknown protein		
Niben101Scf02947g04003.1			Unknown protein		
Niben101Scf00854g08006.1			Unknown protein		
Niben101Scf01157g00004.1	sp|A6TWP7|FTSH2_ALKMQ	****	ATP-dependent zinc metalloprotease FtsH 2	IPR003959 (ATPase, AAA-type, core), IPR005936 (Peptidase, FtsH), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf09792g00014.1	sp|Q55669|CTPA_SYNY3	--*-	Carboxyl-terminal-processing protease	IPR029045 (ClpP/crotonase-like domain)	
Niben101Scf05649g03011.1	sp|O95562|SFT2B_HUMAN	*-**	Vesicle transport protein SFT2B	IPR007305 (Vesicle transport protein, Got1/SFT2-like)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf00822g01007.1	sp|P50165|TRNH_DATST	****	Tropinone reductase homolog	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01013g02005.1	ref|NP_001056347.1|	*-*-	OsJ_19573 [Oryza sativa Japonica Group]		
Niben101Scf03223g00007.1	sp|Q32P99|UBE2B_BOVIN	*-*-	Ubiquitin-conjugating enzyme E2 B	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR027230 (SUMO-conjugating enzyme Ubc9)	GO:0019789 (SUMO transferase activity)
Niben101Scf03565g07022.1	AT2G39110.1	****	Protein kinase superfamily protein LENGTH=435	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00138g00001.1	AT5G35380.1	*-*-	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain LENGTH=731	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf08804g03002.1	sp|B7JN38|DNAJ_BACC0	***-	Chaperone protein DnaJ	IPR012724 (Chaperone DnaJ)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0009408 (response to heat), GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf01111g06004.1	gb|KEH21047.1|	*-*-	myosin heavy chain-like protein [Medicago truncatula]		
Niben101Scf01697g02003.1	sp|Q9LFC5|PP360_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00128g04006.1	sp|P73437|FTSH4_SYNY3	*-**	ATP-dependent zinc metalloprotease FtsH 4	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00854g06026.1	sp|C1KZH8|RL23_LISMC	--*-	50S ribosomal protein L23	IPR002541 (Cytochrome c assembly protein), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf03034g00010.1	sp|B9DG24|TAF7_ARATH	*-*-	Transcription initiation factor TFIID subunit 7		
Niben101Scf00736g00013.1	sp|Q5XEM9|ALFL5_ARATH	***-	PHD finger protein ALFIN-LIKE 5	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR021998 (Alfin)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0042393 (histone binding)
Niben101Scf13773g00026.1	sp|Q9ZUA5|VIT1_ARATH	*-*-	Vacuolar iron transporter 1	IPR008217 (Ccc1 family)	
Niben101Scf03949g01009.1	AT4G20860.1	****	FAD-binding Berberine family protein LENGTH=530	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05938g01048.1	sp|Q9SH60|PP103_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05901g02003.1	sp|Q6NUJ5|PWP2B_HUMAN	--*-	PWWP domain-containing protein 2B	IPR000313 (PWWP domain)	
Niben101Scf05998g01004.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03076g01001.1	AT2G44380.1	*-*-	Cysteine/Histidine-rich C1 domain family protein LENGTH=247	IPR001965 (Zinc finger, PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01833g00002.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02160g02015.1	AT1G18390.2	*-*-	Protein kinase superfamily protein LENGTH=654		
Niben101Scf12293g00002.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf02668g01017.1	ref|WP_021675094.1|	--*-	UDP-N-acetylmuramate dehydrogenase [Peptostreptococcaceae bacterium oral taxon 113] gb|ERJ80681.1| UDP-N-acetylmuramate dehydrogenase [Peptostreptococcaceae bacterium oral taxon 113 str. W5053]		
Niben101Scf02344g00006.1	sp|Q9ESU6|BRD4_MOUSE	--*-	Bromodomain-containing protein 4	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf02807g00003.1	AT4G15160.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=275	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00904g04002.1	sp|A5DVI0|NM111_LODEL	--*-	Pro-apoptotic serine protease NMA111		
Niben101Scf11812g00009.1			Unknown protein		
Niben101Scf05044g02017.1	sp|Q9M817|PTR6_ARATH	*-*-	Protein NRT1/ PTR FAMILY 1.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Ctg08752g00001.1	ref|NP_001045217.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf04804g03015.1	AT4G27010.2	*-*-	INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages;	IPR021714 (Nucleolar pre-ribosomal-associated protein 1, N-terminal)	
Niben101Scf04815g01028.1	sp|Q14156|EFR3A_HUMAN	*-*-	Protein EFR3 homolog A	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04350g00020.1	sp|Q9C6S1|FH14_ARATH	*-*-	Formin-like protein 14	IPR000008 (C2 domain), IPR015425 (Formin, FH2 domain), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0005515 (protein binding)
Niben101Scf00339g09005.1	sp|B3H5Q1|BGL11_ARATH	***-	Beta-glucosidase 11	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02398g02004.1	sp|Q8L5Y9|PANK2_ARATH	*-**	Pantothenate kinase 2	IPR004567 (Type II pantothenate kinase)	GO:0004594 (pantothenate kinase activity), GO:0005524 (ATP binding), GO:0015937 (coenzyme A biosynthetic process)
Niben101Scf00477g00013.1	sp|C4LA13|BIOH_TOLAT	***-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04722g03016.1	sp|A8GV67|DNAJ_RICB8	***-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf03152g00020.1	sp|Q27RY7|YCF2_SOLTU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf01774g05014.1	ref|XP_002510056.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52243.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf35412g00009.1	AT1G65450.1	****	HXXXD-type acyl-transferase family protein LENGTH=450	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04795g01009.1	sp|Q8R0A0|T2FB_MOUSE	****	General transcription factor IIF subunit 2	IPR003196 (Transcription initiation factor IIF, beta subunit)	GO:0005524 (ATP binding), GO:0005674 (transcription factor TFIIF complex), GO:0006367 (transcription initiation from RNA polymerase II promoter)
Niben101Scf09238g00004.1	AT3G17860.1	***-	jasmonate-zim-domain protein 3 LENGTH=352	IPR010399 (Tify), IPR018467 (CO/COL/TOC1, conserved site)	
Niben101Scf18955g00001.1	sp|Q6IRE4|TS101_RAT	*-*-	Tumor susceptibility gene 101 protein	IPR017916 (Steadiness box)	
Niben101Scf08446g01003.1	sp|B2B1M4|SEY1_PODAN	--*-	Protein SEY1		
Niben101Scf01154g19024.1	AT4G20070.1	***-	allantoate amidohydrolase LENGTH=525	IPR002933 (Peptidase M20)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01188g08006.1	sp|Q9FHW7|SKP1B_ARATH	***-	SKP1-like protein 1B	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf04921g01029.1	sp|P43510|CPR6_CAEEL	****	Cathepsin B-like cysteine proteinase 6	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01026g03013.1	sp|P81395|MYB30_ANTMA	*-*-	Myb-related protein 330	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01393g01001.1	sp|Q84WU6|ARFQ_ARATH	****	Auxin response factor 17	IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone)
Niben101Scf00163g08019.1	sp|Q885L1|PHS_PSESM	****	Pterin-4-alpha-carbinolamine dehydratase	IPR001533 (Transcriptional coactivator/pterin dehydratase)	GO:0006729 (tetrahydrobiopterin biosynthetic process), GO:0008124 (4-alpha-hydroxytetrahydrobiopterin dehydratase activity)
Niben101Ctg15084g00005.1	sp|Q969K4|ABTB1_HUMAN	*-*-	Ankyrin repeat and BTB/POZ domain-containing protein 1	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf01134g00022.1	AT3G56900.1	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=447	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf09089g01027.1	AT5G06130.2	***-	chaperone protein dnaJ-related LENGTH=315		
Niben101Scf06347g02005.1	gb|EJY73850.1|	*-*-	methyltransferase, FkbM family [Oxytricha trifallax]	IPR006342 (Methyltransferase FkbM), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01585g01017.1	sp|Q9LHP1|RL74_ARATH	***-	60S ribosomal protein L7-4	IPR005998 (Ribosomal protein L7, eukaryotic)	
Niben101Scf03079g01003.1	tpg|DAA41631.1|	*-*-	TPA: transmembrane protein 115 [Zea mays]		
Niben101Scf00202g06003.1	AT2G21520.2	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=637	IPR001071 (Cellular retinaldehyde binding/alpha-tocopherol transport), IPR011074 (CRAL/TRIO, N-terminal domain)	GO:0005215 (transporter activity), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf02336g00010.1	sp|P25792|CYSP_SCHMA	*-**	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00626g02012.1	sp|Q9M2Z4|MSBP2_ARATH	****	Membrane steroid-binding protein 2	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf10385g00025.1	ref|XP_007032222.1|	*-*-	Regulator of chromosome condensation family with FYVE zinc finger domain, putative isoform 1 [Theobroma cacao] ref|XP_007032223.1| Regulator of chromosome condensation family with FYVE zinc finger domain, putative isoform 1 [Theobroma cacao] gb|EOY03148.1| Regulator of chromosome condensation family with FYVE zinc finger domain, putative isoform 1 [Theobroma cacao] gb|EOY03149.1| Regulator of chromosome condensation family with FYVE zinc finger domain, putative isoform 1 [Theobroma cacao]	IPR027988 (Transcription factor  BREVIS RADIX, N-terminal domain)	
Niben101Scf07023g00002.1			Unknown protein		
Niben101Scf11608g01009.1	sp|Q9SFU6|CALS9_ARATH	****	Callose synthase 9	IPR003440 (Glycosyl transferase, family 48)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf03439g02013.1			Unknown protein		
Niben101Scf02563g01008.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf14513g00005.1	AT5G67370.1	***-	Protein of unknown function (DUF1230) LENGTH=327	IPR009631 (Uncharacterised protein family Ycf36)	
Niben101Scf01596g12001.1	AT5G04740.1	***-	ACT domain-containing protein LENGTH=301		
Niben101Scf02589g05007.1	gb|ABF94077.1|	--*-	expressed protein [Oryza sativa Japonica Group]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf18245g00003.1	AT2G36290.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=364	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf12983g01054.1	gb|ABG22017.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf04763g00013.1	sp|Q9MAI5|ERF79_ARATH	*-**	Ethylene-responsive transcription factor 8	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10188g02001.1			Unknown protein		
Niben101Scf02230g01002.1	dbj|BAB90384.1|	*-*-	P0432B10.2 [Oryza sativa Japonica Group]		
Niben101Scf39382g00003.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf13545g00003.1	AT3G53950.1	***-	glyoxal oxidase-related protein LENGTH=545	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR014756 (Immunoglobulin E-set), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf00142g01009.1			Unknown protein		
Niben101Scf01230g04021.1	AT5G23250.1	****	Succinyl-CoA ligase, alpha subunit LENGTH=341	IPR005810 (Succinyl-CoA ligase, alpha subunit), IPR016040 (NAD(P)-binding domain), IPR016102 (Succinyl-CoA synthetase-like)	GO:0003824 (catalytic activity), GO:0003878 (ATP citrate synthase activity), GO:0004775 (succinate-CoA ligase (ADP-forming) activity), GO:0008152 (metabolic process), GO:0048037 (cofactor binding)
Niben101Scf00415g06009.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00539g02001.1	sp|Q9SIZ6|GDL47_ARATH	*-**	GDSL esterase/lipase	IPR002347 (Glucose/ribitol dehydrogenase), IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process), GO:0016298 (lipase activity), GO:0016491 (oxidoreductase activity), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00682g02011.1			Unknown protein		
Niben101Scf01491g02006.1	AT1G21390.1	*-*-	embryo defective 2170 LENGTH=248		
Niben101Scf12364g00001.1			Unknown protein		
Niben101Scf02738g03012.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02299g02014.1	AT4G03620.1	***-	myosin heavy chain-related LENGTH=342		
Niben101Scf18745g00023.1	sp|Q8JUX5|POLS_CHIKS	--*-	Structural polyprotein		
Niben101Scf00788g03015.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY), IPR018872 (Zn-cluster domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08126g00006.1	sp|Q31708|RT04_ARATH	*-*-	Ribosomal protein S4, mitochondrial		
Niben101Scf12670g00008.1	AT1G06050.1	***-	Protein of unknown function (DUF1336) LENGTH=313	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf01026g01002.1	tpg|DAA39007.1|	*-*-	TPA: hypothetical protein ZEAMMB73_811988 [Zea mays]		
Niben101Scf13429g02005.1	AT1G62500.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=297	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02373g04026.1	ref|XP_002517764.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF44571.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03856g04002.1	sp|Q6QN12|IOD2_PIG	--*-	Type II iodothyronine deiodinase		
Niben101Scf03494g12028.1	sp|A3C057|SPL17_ORYSJ	*-**	Squamosa promoter-binding-like protein 17	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf01787g00032.1	ref|XP_010107039.1|	*-*-	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 [Morus notabilis] gb|EXC13351.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 [Morus notabilis]		
Niben101Scf03977g02005.1	sp|O95563|MPC2_HUMAN	****	Mitochondrial pyruvate carrier 2	IPR005336 (Mitochondrial pyruvate carrier)	GO:0005743 (mitochondrial inner membrane), GO:0006850 (mitochondrial pyruvate transport)
Niben101Scf00854g08049.1	sp|Q5DRB5|PCDG5_PANTR	--*-	Protocadherin gamma-A5		
Niben101Scf03751g01002.1	sp|F4HT49|PABP1_ARATH	****	Polyadenylate-binding protein 1	IPR006515 (Polyadenylate binding protein, human types 1, 2, 3, 4), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf05226g02008.1	AT1G76310.1	****	CYCLIN B2;4 LENGTH=431	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf01653g02015.1			Unknown protein		
Niben101Scf01498g02004.1	sp|Q754W7|NCBP2_ASHGO	*-**	Nuclear cap-binding protein subunit 2	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR027157 (Nuclear cap-binding protein subunit 2)	GO:0000166 (nucleotide binding), GO:0000339 (RNA cap binding), GO:0003676 (nucleic acid binding), GO:0005846 (nuclear cap binding complex), GO:0045292 (mRNA cis splicing, via spliceosome)
Niben101Scf02210g06004.1	gb|KEH16467.1|	***-	telomerase activating protein Est1 [Medicago truncatula]	IPR018834 (DNA/RNA-binding domain, Est1-type), IPR019458 (Telomerase activating protein Est1)	
Niben101Scf00416g01010.1	sp|Q54Q31|PHB2_DICDI	***-	Prohibitin-2	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf06345g05001.1	sp|Q9SVA3|FBK98_ARATH	***-	F-box/kelch-repeat protein	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf02133g03002.1	tpg|DAA54970.1|	--*-	TPA: hypothetical protein ZEAMMB73_342197 [Zea mays]		
Niben101Scf00286g04005.1	ref|NP_171924.2|	***-	P-loop containing nucle [Arabidopsis thaliana]	IPR010488 (Zeta toxin domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016301 (kinase activity)
Niben101Scf06394g04008.1			Unknown protein		
Niben101Scf00233g00005.1	sp|P40690|ALKE_BABBO	*-*-	Aldo-keto reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf03449g01013.1	AT2G43040.1	***-	tetratricopeptide repeat (TPR)-containing protein LENGTH=704	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08112g00005.1	AT3G18240.1	***-	Ribosomal protein S24/S35, mitochondrial LENGTH=419	IPR019349 (Ribosomal protein S24/S35, mitochondrial, conserved domain)	
Niben101Scf00812g02002.1	sp|E9QAU8|RN165_MOUSE	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07846g00007.1			Unknown protein		
Niben101Scf05368g05004.1	ref|XP_002881577.1|	*-**	DNA binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH57836.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05588g02010.1	AT1G08470.1	*-*-	strictosidine synthase-like 3 LENGTH=390	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf03918g00002.1	sp|Q9C652|RBP1_ARATH	--**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06100g02001.1	sp|A2Y3B5|GPA1_ORYSI	*-**	Guanine nucleotide-binding protein alpha-1 subunit	IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0007186 (G-protein coupled receptor signaling pathway), GO:0019001 (guanyl nucleotide binding), GO:0031683 (G-protein beta/gamma-subunit complex binding)
Niben101Scf09325g03007.1	emb|CDY27601.1|	*-*-	BnaA09g28060D [Brassica napus]	IPR012458 (Protein of unknown function DUF1664)	
Niben101Scf13164g00010.1	sp|Q71VM4|IMA1A_ORYSJ	***-	Importin subunit alpha-1a	IPR002652 (Importin-alpha, importin-beta-binding domain), IPR016024 (Armadillo-type fold), IPR024931 (Importin subunit alpha)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006606 (protein import into nucleus), GO:0008565 (protein transporter activity)
Niben101Scf03028g01011.1	sp|Q39013|NAC2_ARATH	***-	NAC domain-containing protein 2	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08975g02034.1	sp|B6IDH3|RUS5_ARATH	***-	Protein root UVB sensitive 5	IPR006968 (Root UVB sensitive family)	
Niben101Scf02268g13005.1	AT3G02800.1	****	Tyrosine phosphatase family protein LENGTH=203	IPR004861 (Protein-tyrosine phosphatase, SIW14-like), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf15402g00005.1	gb|KEH20515.1|	****	zinc ion-binding protein [Medicago truncatula]	IPR012935 (Zinc finger, C3HC-like)	GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf05552g08006.1	sp|Q8LGM7|MOCOS_SOLLC	*-*-	Molybdenum cofactor sulfurase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00691g04016.1	AT5G58000.1	*-*-	Reticulon family protein LENGTH=487	IPR003388 (Reticulon)	
Niben101Scf03488g09017.1	gb|AES64840.2|	***-	S-adenosyl-L-methionine-dependent methyltransferase, putative [Medicago truncatula]	IPR003788 (Putative S-adenosyl-L-methionine-dependent methyltransferase MidA), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf25537g00002.1	sp|Q9SHB5|WRK55_ARATH	*-**	WRKY transcription factor 55	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04424g00001.1	AT1G15550.1	***-	gibberellin 3-oxidase 1 LENGTH=358	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf09268g00006.1	sp|Q9NW13|RBM28_HUMAN	*-**	RNA-binding protein 28	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07788g00014.1			Unknown protein		
Niben101Scf02508g01006.1	sp|Q8RWF0|PS13A_ARATH	***-	26S proteasome non-ATPase regulatory subunit 13 homolog A	IPR000717 (Proteasome component (PCI) domain)	GO:0005515 (protein binding)
Niben101Scf06405g00006.1	AT5G05690.1	***-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06383g00002.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf03445g01014.1	sp|P49459|UBE2A_HUMAN	--*-	Ubiquitin-conjugating enzyme E2 A	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf06467g01013.1			Unknown protein		
Niben101Scf07639g04003.1	ref|XP_002532498.1|	*-*-	ring finger protein, putative [Ricinus communis] gb|EEF29874.1| ring finger protein, putative [Ricinus communis]		
Niben101Scf20246g00001.1	gb|AIF76113.1|	****	cytochrome c biogenesis B, partial (mitochondrion) [Halodule pinifolia]	IPR003544 (Cytochrome c-type biogenesis protein CcmB)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf01237g07016.1			Unknown protein		
Niben101Scf00717g02019.1	AT1G63430.2	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=688		
Niben101Scf01720g00017.1	sp|Q43735|PER27_ARATH	****	Peroxidase 27	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02239g01001.1	sp|Q9FLN0|GLIP1_ARATH	***-	GDSL esterase/lipase 1	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf15366g00003.1	sp|Q8GXJ4|GLR34_ARATH	****	Glutamate receptor 3.4	IPR001320 (Ionotropic glutamate receptor)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf02535g03005.1	AT4G11610.1	*-*-	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1011	IPR013583 (Phosphoribosyltransferase C-terminal)	
Niben101Scf00635g08005.1	AT1G26480.1	***-	general regulatory factor 12 LENGTH=268	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf03493g00019.1	AT3G55440.1	****	triosephosphate isomerase LENGTH=254	IPR000652 (Triosephosphate isomerase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004807 (triose-phosphate isomerase activity), GO:0008152 (metabolic process)
Niben101Scf00449g01001.1	AT3G55240.1	***-	Plant protein 1589 of unknown function LENGTH=95	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf01371g03003.1	AT2G18500.1	*-*-	ovate family protein 7 LENGTH=315	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf01259g08012.1	AT5G63610.1	****	cyclin-dependent kinase E;1 LENGTH=470	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02133g10007.1	AT1G55860.1	*-*-	ubiquitin-protein ligase 1 LENGTH=3930	IPR025527 (Domain of unknown function DUF4414)	
Niben101Scf03254g06001.1	AT2G39510.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=374	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf11497g02011.1	gb|AAB01585.1|	--*-	ORF-239; putative [Phaseolus vulgaris] gb|AAA32029.2| sterility protein 2 [Phaseolus vulgaris]		
Niben101Scf05516g02007.1			Unknown protein		
Niben101Scf03283g04003.1	AT3G50150.1	***-	Plant protein of unknown function (DUF247) LENGTH=509	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf00856g00003.1	sp|Q80XC2|TRM61_MOUSE	*-**	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A	IPR014816 (tRNA (1-methyladenosine) methyltransferase catalytic subunit Gcd14), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0016429 (tRNA (adenine-N1-)-methyltransferase activity), GO:0030488 (tRNA methylation), GO:0031515 (tRNA (m1A) methyltransferase complex)
Niben101Scf02203g04006.1	sp|Q80VQ1|LRRC1_MOUSE	*-*-	Leucine-rich repeat-containing protein 1	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf05540g00014.1	sp|Q9S7F3|BEH1_ARATH	*-*-	BES1/BZR1 homolog protein 1	IPR008540 (BZR1, transcriptional repressor)	
Niben101Scf12928g01024.1	sp|Q9M907|PP217_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03209g00030.1	sp|P04161|PUR3_YEAST	****	Phosphoribosylglycinamide formyltransferase	IPR004607 (Phosphoribosylglycinamide formyltransferase)	GO:0004644 (phosphoribosylglycinamide formyltransferase activity), GO:0006189 ('de novo' IMP biosynthetic process), GO:0008168 (methyltransferase activity), GO:0009058 (biosynthetic process), GO:0016742 (hydroxymethyl-, formyl- and related transferase activity)
Niben101Scf00711g02004.1	sp|Q9LZA6|SDP1_ARATH	*-*-	Triacylglycerol lipase SDP1		
Niben101Scf03597g00014.1	sp|Q6IP65|RCD1_XENLA	***-	Cell differentiation protein RCD1 homolog	IPR007216 (Rcd1), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00445g02005.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf16651g00007.1	emb|CDY16192.1|	*-*-	BnaA09g29260D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf01154g12010.1	sp|Q948U0|RBOHA_SOLTU	****	Respiratory burst oxidase homolog protein A	IPR011992 (EF-hand domain pair), IPR013121 (Ferric reductase, NAD binding), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0004601 (peroxidase activity), GO:0005509 (calcium ion binding), GO:0016491 (oxidoreductase activity), GO:0050664 (oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf02502g07008.1	sp|Q5FKU5|SYI_LACAC	--*-	Isoleucine--tRNA ligase		
Niben101Scf03805g01007.1	AT2G29980.1	*-*-	fatty acid desaturase 3 LENGTH=386		
Niben101Scf02269g03006.1	sp|Q9FEL7|LAX2_MEDTR	***-	Auxin transporter-like protein 2	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf09296g00008.1			Unknown protein		
Niben101Scf06753g02010.1	sp|O24160|TGA21_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf10556g00010.1	AT3G11450.1	*-**	DnaJ domain ;Myb-like DNA-binding domain LENGTH=647	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf11383g02020.1	sp|O61125|STK4_DICDI	*-**	Serine/threonine-protein kinase 4 homolog A	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10169g02005.1	sp|F4IH21|TBL33_ARATH	***-	Protein trichome birefringence-like 33	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf10524g03006.1	ref|XP_007035569.1|	***-	Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 2 [Theobroma cacao] gb|EOY06495.1| Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 2 [Theobroma cacao]	IPR006867 (Domain of unknown function DUF632)	
Niben101Scf02361g00002.1			Unknown protein		
Niben101Scf01018g03001.1	AT3G24840.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=579	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf14009g02023.1	emb|CDY20043.1|	***-	BnaA09g02080D [Brassica napus]		
Niben101Scf11723g01002.1	AT4G02940.1	***-	oxidoreductase, 2OG-Fe(II) oxygenase family protein LENGTH=569	IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	
Niben101Scf00788g03016.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY), IPR018872 (Zn-cluster domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04339g06018.1	ref|XP_007020929.1|	***-	ARM repeat superfamily protein isoform 1 [Theobroma cacao] gb|EOY12454.1| ARM repeat superfamily protein isoform 1 [Theobroma cacao]	IPR002553 (Clathrin/coatomer adaptor, adaptin-like, N-terminal), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf04091g00030.1			Unknown protein		
Niben101Scf19458g00010.1	ref|WP_015808936.1|	--*-	short-chain dehydrogenase [Pedobacter heparinus] ref|YP_003093389.1| short-chain dehydrogenase/reductase SDR [Pedobacter heparinus DSM 2366] gb|ACU05327.1| short-chain dehydrogenase/reductase SDR [Pedobacter heparinus DSM 2366]		
Niben101Scf01773g07014.1	sp|A5DA00|SEC23_PICGU	****	Protein transport protein SEC23	IPR002035 (von Willebrand factor, type A), IPR006895 (Zinc finger, Sec23/Sec24-type), IPR006896 (Sec23/Sec24, trunk domain), IPR006900 (Sec23/Sec24, helical domain), IPR012990 (Sec23/Sec24 beta-sandwich), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0006886 (intracellular protein transport), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0008270 (zinc ion binding), GO:0030127 (COPII vesicle coat)
Niben101Scf02764g05013.1	sp|P48620|FAD3C_SESIN	***-	Omega-3 fatty acid desaturase, chloroplastic	IPR005804 (Fatty acid desaturase, type 1), IPR021863 (Protein of unknown function DUF3474)	GO:0006629 (lipid metabolic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0055114 (oxidation-reduction process)
Niben101Scf06653g00012.1	gb|AES90902.2|	*-*-	RGPR-like protein [Medicago truncatula]		
Niben101Scf05095g01020.1	sp|Q8TFK8|DED1_CANGA	*-*-	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf05437g01009.1	sp|Q9SUD8|PP340_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05491g00012.1	sp|A2STT9|RL1_METLZ	****	50S ribosomal protein L1	IPR023673 (Ribosomal protein L1, conserved site), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf06275g00008.1	AT1G60140.1	****	trehalose phosphate synthase LENGTH=861	IPR001830 (Glycosyl transferase, family 20), IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf01289g08003.1			Unknown protein		
Niben101Scf05998g00012.1			Unknown protein		
Niben101Scf02597g03006.1	AT1G77290.1	***-	Glutathione S-transferase family protein LENGTH=266	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf04018g07006.1	sp|Q5XEM9|ALFL5_ARATH	***-	PHD finger protein ALFIN-LIKE 5	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR021998 (Alfin)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0042393 (histone binding)
Niben101Scf02381g04028.1	emb|CDY42334.1|	***-	BnaC02g17110D [Brassica napus]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf05535g03004.1	AT3G57040.1	***-	response regulator 9 LENGTH=234	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf11723g02016.1	sp|Q9ZNV9|AHP1_ARATH	***-	Histidine-containing phosphotransfer protein 1	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity)
Niben101Scf05483g01007.1	sp|P55993|RPOD_HELPY	*-**	RNA polymerase sigma factor RpoD	IPR014284 (RNA polymerase sigma-70 like domain), IPR016262 (RNA polymerase sigma factor, SigB/SigC/SigD, plastid)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Scf00176g08005.1	gb|KEH43929.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00280g01006.1	sp|P42851|IMDH_PYRFU	*-*-	Inosine-5'-monophosphate dehydrogenase	IPR000644 (CBS domain)	
Niben101Scf04556g04014.1	sp|Q9XZE5|PP2AA_DICDI	***-	Serine/threonine-protein phosphatase 2A catalytic subunit A	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf05329g01010.1			Unknown protein		
Niben101Scf06910g03007.1	sp|A6UUQ4|GLMU_META3	***-	Bifunctional protein GlmU	IPR001451 (Bacterial transferase hexapeptide repeat), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf07515g00003.1	ref|XP_007011833.1|	***-	My isoform 2 [Theobroma cacao]		
Niben101Scf11564g01002.1			Unknown protein		
Niben101Scf02798g01061.1	sp|A1EA08|PSAA_AGRST	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf13966g00008.1	sp|P08743|COX1_OENBE	****	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023615 (Cytochrome c oxidase, subunit I, copper-binding site), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03300g05019.1	sp|Q21017|KIN29_CAEEL	*-**	Serine/threonine-protein kinase kin-29	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11484g00019.1	sp|Q7XWU8|EXPA1_ORYSJ	***-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf02407g01004.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03913g01012.1	dbj|BAC20100.1|	--*-	ATP synthase subunit-like protein [Oryza sativa Japonica Group] gb|EAZ39136.1| hypothetical protein OsJ_23562 [Oryza sativa Japonica Group]		
Niben101Scf06716g01016.1	sp|O57683|SF3B1_XENLA	***-	Splicing factor 3B subunit 1	IPR015016 (Splicing factor 3B subunit 1), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02798g00049.1	sp|A4J650|NUON_DESRM	*-*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf02413g03018.1	AT5G57580.1	***-	Calmodulin-binding protein LENGTH=647	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf04144g01007.1	emb|CDO45707.1|	***-	Protein glycosylationmyb-like TTH transcriptional regulator, partial [Leucadendron diemontianum]	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf01438g08004.1	sp|Q05001|NCPR_CATRO	****	NADPH--cytochrome P450 reductase	IPR001094 (Flavodoxin), IPR023173 (NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3), IPR029039 (Flavoprotein-like)	GO:0005506 (iron ion binding), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10715g01001.1	sp|O24160|TGA21_TOBAC	*-**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03473g01017.1	sp|Q9EQE1|SENP2_RAT	--*-	Sentrin-specific protease 2	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf05750g01007.1	AT3G48500.2	*-*-	Nucleic acid-binding, OB-fold-like protein LENGTH=697		
Niben101Scf04401g05001.1	ref|NP_001047761.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf10889g01018.1	sp|O65685|BLH6_ARATH	***-	BEL1-like homeodomain protein 6	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04290g03005.1	sp|Q70Z18|NAP1B_TOBAC	*-**	Nucleosome assembly protein 1;2	IPR002164 (Nucleosome assembly protein (NAP))	GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf04063g00014.1	dbj|BAB32951.1|	*-*-	COP1-interacting protein 4 [Arabidopsis thaliana]		
Niben101Scf00750g04010.1			Unknown protein		
Niben101Scf06933g02023.1	sp|F6HH45|TRM52_VITVI	*-*-	tRNA (guanine(37)-N1)-methyltransferase 2		
Niben101Scf01701g03004.1	sp|A9AXD9|OBG_HERA2	--*-	GTPase Obg		
Niben101Scf03309g06007.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Ctg08516g00003.1	gb|KEH44427.1|	*-*-	GRAM domain protein/ABA-responsive-like protein [Medicago truncatula]		
Niben101Scf04187g00028.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf09701g01012.1	ref|XP_003609239.1|	*-**	E3 ubiquitin-protein ligase MARCH3 [Medicago truncatula] gb|AES91436.1| zinc finger protein [Medicago truncatula]	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf06437g00005.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11991g01010.1	sp|Q9ZUH1|Y2424_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0051260 (protein homooligomerization)
Niben101Scf02112g01004.1	sp|Q9LW00|MBD11_ARATH	*-**	Methyl-CpG-binding domain-containing protein 11	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf08724g06009.1			Unknown protein		
Niben101Scf04782g02006.1	AT1G66430.1	****	pfkB-like carbohydrate kinase family protein LENGTH=384	IPR002139 (Ribokinase), IPR029056 (Ribokinase-like)	GO:0004747 (ribokinase activity), GO:0006014 (D-ribose metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf01989g00002.1	sp|Q2KII4|ELOC_BOVIN	***-	Transcription elongation factor B polypeptide 1	IPR001232 (S-phase kinase-associated protein 1-like), IPR011333 (BTB/POZ fold)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf01870g00003.1	sp|Q9FEP7|SUT13_ARATH	****	Sulfate transporter 1.3	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0005886 (plasma membrane), GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01371g07014.1	sp|Q504L7|ZN574_RAT	*-*-	Zinc finger protein 574	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf02702g00005.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04794g00023.1	sp|Q9SH60|PP103_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf09109g01010.1	gb|ACG44481.1|	--*-	4F5 protein family protein [Zea mays]		
Niben101Scf01899g04013.1	sp|Q9LYP4|BAG3_ARATH	*-*-	BAG family molecular chaperone regulator 3	IPR029071 (Ubiquitin-related domain)	
Niben101Scf01999g06002.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR000985 (Legume lectin, alpha chain, conserved site), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf03145g04002.1	emb|CDY44898.1|	***-	BnaA02g13840D [Brassica napus]		
Niben101Scf00819g07001.1	AT3G56200.1	***-	Transmembrane amino acid transporter family protein LENGTH=435	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf03278g01002.1	sp|Q83E09|RS1_COXBU	--*-	30S ribosomal protein S1		
Niben101Ctg15453g00003.1	sp|Q9FHA3|DPOLA_ARATH	*-**	DNA polymerase alpha catalytic subunit	IPR015088 (Zinc finger, DNA-directed DNA polymerase, family B, alpha), IPR029702 (DNA polymerase alpha catalytic subunit)	GO:0001882 (nucleoside binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication), GO:0006270 (DNA replication initiation)
Niben101Ctg14358g00001.1	ref|XP_007030032.1|	--*-	MIF4G domain and MA3 domain-containing protein isoform 6 [Theobroma cacao] gb|EOY10534.1| MIF4G domain and MA3 domain-containing protein isoform 6 [Theobroma cacao]		
Niben101Scf12112g04019.1	gb|AAT66777.2|	***-	Late blight resistance protein, putative [Solanum demissum]		
Niben101Scf05998g01005.1	sp|Q84Y01|ITPK1_MAIZE	****	Inositol-tetrakisphosphate 1-kinase 1	IPR008656 (Inositol-tetrakisphosphate 1-kinase)	GO:0000287 (magnesium ion binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0032957 (inositol trisphosphate metabolic process), GO:0047325 (inositol tetrakisphosphate 1-kinase activity), GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity), GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
Niben101Scf03010g03003.1	AT1G61800.1	***-	glucose-6-phosphate/phosphate translocator 2 LENGTH=388	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf01571g05002.1	ref|XP_007014334.1|	*-*-	S-aden isoform 1 [Theobroma cacao]	IPR022238 (Uncharacterised protein family, methyltransferase, Williams-Beuren syndrome)	
Niben101Scf02752g11002.1	sp|B6T959|CASP1_MAIZE	***-	Casparian strip membrane protein 1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf03049g05008.1	gb|ABA95546.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf07488g00024.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01084g06002.1	sp|P23137|GRP1_TOBAC	***-	Glycine-rich protein		
Niben101Scf15972g01024.1	sp|Q9CKC0|CLPB_PASMU	***-	Chaperone protein ClpB	IPR001270 (ClpA/B family), IPR004176 (Clp, N-terminal), IPR019489 (Clp ATPase, C-terminal), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028299 (ClpA/B, conserved site 2)	GO:0005524 (ATP binding), GO:0019538 (protein metabolic process)
Niben101Scf06343g00006.1	sp|Q9M2J7|LBD29_ARATH	***-	LOB domain-containing protein 29	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Ctg14214g00003.1	gb|KEH24348.1|	--*-	sister-chromatide cohesion protein [Medicago truncatula]		
Niben101Scf07650g01018.1	gb|AES78035.2|	***-	DNA-binding protein, putative [Medicago truncatula]		
Niben101Scf00654g02003.1	sp|Q9LTT8|VCS_ARATH	***-	Enhancer of mRNA-decapping protein 4	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04196g03017.1	AT5G15270.2	****	RNA-binding KH domain-containing protein LENGTH=548	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf00712g05012.1	sp|Q08DI6|RNF11_BOVIN	*-*-	RING finger protein 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00578g07004.1	AT1G63800.1	***-	ubiquitin-conjugating enzyme 5 LENGTH=185	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf00390g02001.1	sp|Q6NKX1|PROD2_ARATH	****	Proline dehydrogenase 2, mitochondrial	IPR015659 (Proline oxidase), IPR029041 (FAD-linked oxidoreductase-like)	GO:0004657 (proline dehydrogenase activity), GO:0006562 (proline catabolic process)
Niben101Scf08691g00001.1	AT2G20990.3	***-	synaptotagmin A LENGTH=579	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf10048g02005.1	sp|Q9SJ41|C3H18_ARATH	***-	Zinc finger CCCH domain-containing protein 18	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR025605 (OST-HTH/LOTUS domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf04103g02001.1	sp|F6HH45|TRM52_VITVI	****	tRNA (guanine(37)-N1)-methyltransferase 2	IPR025792 (tRNA (guanine(37)-N(1))-methyltransferase, eukaryotic), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0009019 (tRNA (guanine-N1-)-methyltransferase activity), GO:0030488 (tRNA methylation)
Niben101Scf05713g04012.1	AT4G20970.1	***-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=190	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00022g00013.1	sp|A8SE98|PSBD_CERDE	*-**	Photosystem II D2 protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf14669g00001.1	AT4G32350.1	*-*-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=732	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf16022g01033.1	gb|AGI48806.1|	*-*-	transport membrane protein (mitochondrion) [Lolium perenne]		
Niben101Scf10368g00005.1			Unknown protein		
Niben101Scf01746g00004.1	sp|Q9LFT5|EPFL1_ARATH	***-	EPIDERMAL PATTERNING FACTOR-like protein 1		
Niben101Scf01237g05004.1	sp|O49686|PYR1_ARATH	***-	Abscisic acid receptor PYR1	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf00941g04005.1	sp|P14232|TGA1A_TOBAC	****	TGACG-sequence-specific DNA-binding protein TGA-1A	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg16330g00007.1	AT5G06350.1	*-*-	ARM repeat superfamily protein LENGTH=877		
Niben101Scf02793g10008.1	sp|B9KEH4|RS11_CAMLR	***-	30S ribosomal protein S11	IPR001971 (Ribosomal protein S11)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf25352g00002.1	emb|CAD41908.2|	*-*-	[Oryza sativa Japonica Group] emb|CAH68244.1| H0306F03.11 [Oryza sativa Indica Group]		
Niben101Scf05574g03001.1	AT3G55580.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=488	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf00457g01004.1	sp|Q42952|NLTP1_TOBAC	****	Non-specific lipid-transfer protein 1	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf01782g05006.1	sp|Q3ZC10|SMD1_BOVIN	***-	Small nuclear ribonucleoprotein Sm D1	IPR010920 (Like-Sm (LSM) domain), IPR027141 (U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3)	
Niben101Scf00471g02002.1	AT5G45275.1	*-*-	Major facilitator superfamily protein LENGTH=570	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf03082g01002.1			Unknown protein		
Niben101Scf05387g02004.1	sp|Q045Q2|RUVB_LACGA	--**	Holliday junction ATP-dependent DNA helicase RuvB	IPR010339 (TIP49, C-terminal), IPR027238 (RuvB-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0043141 (ATP-dependent 5'-3' DNA helicase activity)
Niben101Scf10466g00016.1	sp|Q84K00|NAC78_ARATH	*-*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00662g02003.1	AT5G43140.1	****	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein LENGTH=254	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf06205g01010.1	sp|Q9ZQI8|NLTL2_ARATH	***-	Non-specific lipid-transfer protein-like protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf04039g02013.1	AT3G45740.1	***-	hydrolase family protein / HAD-superfamily protein LENGTH=376	IPR006353 (HAD-superfamily hydrolase, subfamily IIA, CECR5), IPR023214 (HAD-like domain)	
Niben101Scf01084g01010.1	gb|ADX62220.1|	--*-	Ycf1, partial (chloroplast) [Lepechinia mexicana]		
Niben101Scf03949g02007.1	sp|Q84WP6|NAC43_ARATH	*-*-	NAC domain-containing protein 43	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00254g04001.1	emb|CDY63420.1|	***-	BnaCnng42080D [Brassica napus]		
Niben101Scf03903g04002.1	sp|Q9SIN2|TBL39_ARATH	***-	Protein trichome birefringence-like 39	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf05413g01007.1	sp|Q0DA21|BGL25_ORYSJ	***-	Beta-glucosidase 25	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01220g04008.1	gb|ABF95303.1|	*-*-	expressed protein [Oryza sativa Japonica Group]	IPR022212 (Protein of unknown function DUF3741), IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf00261g00005.1	sp|Q8VYG3|GUN16_ARATH	***-	Endoglucanase 16	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09004g01005.1	sp|Q40588|ASO_TOBAC	***-	L-ascorbate oxidase	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04796g00023.1	gb|KEH35704.1|	*-*-	tapetum determinant protein [Medicago truncatula]		
Niben101Scf15326g00019.1	sp|P39619|YWDK_BACSU	***-	UPF0382 membrane protein YwdK	IPR006696 (Protein of unknown function DUF423)	
Niben101Scf04639g00009.1	sp|Q9LXH0|NRT26_ARATH	*-*-	High affinity nitrate transporter 2.6		
Niben101Scf11653g01002.1	gb|AET78878.1|	*-*-	At2g46550-like protein [Arabidopsis halleri]		
Niben101Scf06318g02008.1	sp|P12994|YBHB_ECOLI	***-	UPF0098 protein YbhB	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf02319g01006.1	sp|Q5HLN7|TCAA_STAEQ	--*-	Membrane-associated protein TcaA		
Niben101Scf00481g02003.1	sp|B1JDA2|RECA_PSEPW	***-	Protein RecA	IPR013765 (DNA recombination and repair protein RecA), IPR023400 (DNA recombination and repair protein RecA, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003697 (single-stranded DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0006281 (DNA repair), GO:0008094 (DNA-dependent ATPase activity), GO:0009432 (SOS response)
Niben101Scf02074g05002.1	sp|P42792|CYB_ARATH	--*-	Cytochrome b		
Niben101Scf00343g02001.1	AT5G64950.1	****	Mitochondrial transcription termination factor family protein LENGTH=391	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01145g02013.1	ref|XP_002532850.1|	*-**	nucleic acid binding protein, putative [Ricinus communis] gb|EEF29528.1| nucleic acid binding protein, putative [Ricinus communis]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf20614g00015.1	sp|A0R5C5|GALE_MYCS2	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005888 (dTDP-glucose 4,6-dehydratase), IPR029903 (RmlD-like substrate binding domain)	GO:0003824 (catalytic activity), GO:0008460 (dTDP-glucose 4,6-dehydratase activity), GO:0009225 (nucleotide-sugar metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf04878g00011.1	sp|Q9SIV5|C3H19_ARATH	*-**	Zinc finger CCCH domain-containing protein 19	IPR003121 (SWIB/MDM2 domain), IPR004343 (Plus-3), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006352 (DNA-templated transcription, initiation), GO:0008270 (zinc ion binding), GO:0016570 (histone modification)
Niben101Scf00389g02009.1	sp|P34885|KPC1B_CAEEL	*-**	Protein kinase C-like 1B	IPR011009 (Protein kinase-like domain), IPR011993 (Pleckstrin homology-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01094g01011.1	sp|P08903|H32_ENCAL	*-*-	Histone H3.2	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold), IPR012337 (Ribonuclease H-like domain)	GO:0000786 (nucleosome), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf03197g06001.1	sp|Q58D00|FBXW2_BOVIN	--*-	F-box/WD repeat-containing protein 2	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01093g05006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01352g02013.1			Unknown protein		
Niben101Scf00904g00016.1	sp|Q9CR14|FANCL_MOUSE	****	E3 ubiquitin-protein ligase FANCL	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR019162 (Fanconi anemia complex, subunit FancL, WD-repeat containing domain), IPR026848 (E3 ubiquitin-protein ligase FANCL)	GO:0004842 (ubiquitin-protein transferase activity), GO:0006281 (DNA repair), GO:0043240 (Fanconi anaemia nuclear complex)
Niben101Scf03363g00003.1			Unknown protein		
Niben101Scf18730g00017.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf16007g00010.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06382g02016.1	sp|Q96499|RL44_GOSHI	***-	60S ribosomal protein L44	IPR000552 (Ribosomal protein L44e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09751g00001.1	sp|Q6AT41|NNJA4_ORYSJ	***-	Ninja-family protein	IPR012463 (Ninja)	
Niben101Scf09061g00003.1	AT5G41040.1	****	HXXXD-type acyl-transferase family protein LENGTH=457	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01481g02009.1	gb|KEH39793.1|	***-	DUF1997 family protein [Medicago truncatula]	IPR018971 (Protein of unknown function DUF1997)	
Niben101Scf01500g00005.1	sp|Q9SIV2|PSD2A_ARATH	*-**	26S proteasome non-ATPase regulatory subunit 2 homolog A	IPR016643 (26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit)	GO:0000502 (proteasome complex), GO:0005488 (binding), GO:0030234 (enzyme regulator activity), GO:0042176 (regulation of protein catabolic process)
Niben101Scf07169g01001.1	AT3G28450.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=605	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf30092g00004.1	AT5G15270.2	*-**	RNA-binding KH domain-containing protein LENGTH=548	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf03396g05010.1	AT1G65950.1	*-*-	Protein kinase superfamily protein LENGTH=551	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03276g00010.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05711g02022.1	AT3G58520.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=418	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf00244g01009.1	sp|P27061|PPA1_SOLLC	****	Acid phosphatase 1	IPR005519 (Acid phosphatase (Class B))	GO:0003993 (acid phosphatase activity)
Niben101Scf12469g01006.1	sp|Q8W246|ZIP7_ARATH	****	Zinc transporter 7	IPR003689 (Zinc/iron permease)	GO:0005385 (zinc ion transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport), GO:0071577 (zinc ion transmembrane transport)
Niben101Scf10300g00006.1	AT2G28480.1	****	RNA-binding CRS1 / YhbY (CRM) domain protein LENGTH=372	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf02407g03017.1	sp|A8MR93|ALG12_ARATH	***-	Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase	IPR005599 (GPI mannosyltransferase)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf00581g00001.1	gb|AET04282.2|	***-	DUF1685 family protein [Medicago truncatula]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf02541g04005.1	sp|A9VJW2|TRPB_BACWK	****	Tryptophan synthase beta chain	IPR006654 (Tryptophan synthase, beta chain)	GO:0004834 (tryptophan synthase activity), GO:0006568 (tryptophan metabolic process)
Niben101Scf04509g02009.1	sp|P52855|RLA1_MAIZE	*-*-	60S acidic ribosomal protein P1	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf00875g07011.1	AT1G29500.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00354g00007.1	sp|Q6NRL1|AGAP1_XENLA	*-**	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf07497g00004.1	sp|C7FF04|PPO3_AGABI	--**	Polyphenol oxidase 3	IPR008922 (Uncharacterised domain, di-copper centre), IPR016213 (Polyphenol oxidase)	GO:0004097 (catechol oxidase activity), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0046148 (pigment biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf07004g02003.1	gb|ABA94687.2|	***-	expressed protein [Oryza sativa Japonica Group]	IPR008547 (Protein of unknown function DUF829, TMEM53), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07008g02007.1	sp|Q9ZVE0|ORN_ARATH	***-	Oligoribonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf15032g00001.1	sp|Q8C0I4|EPC2_MOUSE	--*-	Enhancer of polycomb homolog 2	IPR019542 (Enhancer of polycomb-like, N-terminal), IPR024943 (Enhancer of polycomb protein)	GO:0032777 (Piccolo NuA4 histone acetyltransferase complex), GO:0035267 (NuA4 histone acetyltransferase complex)
Niben101Scf06280g00010.1	sp|Q7NZU6|MSBA_CHRVO	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf05082g03003.1	AT2G21590.1	****	Glucose-1-phosphate adenylyltransferase family protein LENGTH=523	IPR011004 (Trimeric LpxA-like), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005978 (glycogen biosynthetic process), GO:0008878 (glucose-1-phosphate adenylyltransferase activity), GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf10785g01003.1	AT5G13390.1	***-	no exine formation 1 LENGTH=1123		
Niben101Ctg13155g00001.1	sp|Q94JM3|ARFB_ARATH	*-*-	Auxin response factor 2		
Niben101Scf03227g03013.1	sp|P42124|EZ_DROME	*-**	Histone-lysine N-methyltransferase E(z)	IPR001214 (SET domain), IPR003616 (Post-SET domain), IPR007728 (Pre-SET domain)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation)
Niben101Ctg14912g00001.1	gb|AAX31514.1|	*-*-	DNA mismatch repair protein [Phaseolus vulgaris]		
Niben101Scf01655g04005.1	sp|O95864|FADS2_HUMAN	****	Fatty acid desaturase 2	IPR012171 (Fatty acid/sphingolipid desaturase)	GO:0005506 (iron ion binding), GO:0006629 (lipid metabolic process), GO:0006633 (fatty acid biosynthetic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08510g00005.1	gb|ABA94124.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf20768g00031.1	sp|Q7XUK4|GUN12_ORYSJ	***-	Endoglucanase 12	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf13335g00010.1			Unknown protein		
Niben101Scf02760g02003.1	AT4G19420.1	***-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf08304g07005.1	sp|Q6NQB7|B3GT7_ARATH	*-**	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf04110g03004.1	sp|O23044|PER3_ARATH	*-**	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09112g02013.1	sp|B8HPS9|RNH_CYAP4	-**-	Ribonuclease H	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf08643g03024.1	sp|Q9M2Y4|PP276_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00063g14011.1	sp|Q9SB61|ZHD2_ARATH	*-*-	Zinc-finger homeodomain protein 2	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain)	
Niben101Scf12369g01014.1	gb|AAP45187.2|	*-*-	Transposase-related protein, putative [Solanum bulbocastanum]		
Niben101Scf04457g04019.1	AT3G18490.1	***-	Eukaryotic aspartyl protease family protein LENGTH=500	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01735g02021.1	ref|XP_002533796.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF28583.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01438g01004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04436g06002.1	sp|P93847|RL10_SOLME	***-	60S ribosomal protein L10	IPR001197 (Ribosomal protein L10e), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf15885g00032.1	sp|B1XUK1|NUOD_POLNS	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03929g02009.1	gb|AAP53948.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Ctg13498g00002.1			Unknown protein		
Niben101Scf01119g02016.1	AT4G13920.1	*-*-	receptor like protein 50 LENGTH=891	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf03229g00004.1	AT2G33460.1	*-*-	ROP-interactive CRIB motif-containing protein 1 LENGTH=224	IPR000095 (CRIB domain)	
Niben101Scf02420g01005.1	sp|P57057|GLPT_HUMAN	*-**	Glycerol-3-phosphate transporter	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf08442g00007.1	AT3G18590.1	***-	early nodulin-like protein 5 LENGTH=188	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0009055 (electron carrier activity)
Niben101Scf04276g04020.1	sp|Q96321|IMA1_ARATH	***-	Importin subunit alpha-1	IPR002652 (Importin-alpha, importin-beta-binding domain), IPR016024 (Armadillo-type fold), IPR024931 (Importin subunit alpha)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006606 (protein import into nucleus), GO:0008565 (protein transporter activity)
Niben101Scf04133g02026.1	sp|Q8DLP3|ATPA_THEEB	*-**	ATP synthase subunit alpha	IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf24326g00005.1	sp|P55034|PSMD4_ARATH	*-**	26S proteasome non-ATPase regulatory subunit 4 homolog	IPR027040 (Proteasome subunit Rpn10)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0008540 (proteasome regulatory particle, base subcomplex)
Niben101Scf00854g09015.1			Unknown protein		
Niben101Scf24082g00005.1	sp|Q9ZSY8|IAA27_ARATH	***-	Auxin-responsive protein IAA27	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf04789g00001.1	AT1G32580.1	***-	plastid developmental protein DAG, putative LENGTH=229		
Niben101Scf00398g07001.1	sp|Q8LHP0|ELOF1_ORYSJ	***-	Transcription elongation factor 1 homolog	IPR007808 (Transcription elongation factor 1)	
Niben101Scf02158g00003.1	ref|XP_002530155.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF32210.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf18196g00002.1	gb|KEH26132.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf02017g01004.1	sp|Q5ZJJ2|RFA1_CHICK	--*-	Replication protein A 70 kDa DNA-binding subunit	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf09116g02014.1	sp|A1JK09|SYA_YERE8	--*-	Alanine--tRNA ligase		
Niben101Scf05071g00010.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00595g03002.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004842 (ubiquitin-protein transferase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016567 (protein ubiquitination), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04899g04002.1	AT4G32480.1	***-	Protein of unknown function (DUF506) LENGTH=287	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf15543g01002.1	sp|Q9FN11|LBD37_ARATH	***-	LOB domain-containing protein 37	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Ctg15674g00002.1	sp|Q9FJF4|MBD7_ARATH	*-**	Methyl-CpG-binding domain-containing protein 7	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf00167g04017.1	sp|A4QK93|ATPI_BARVE	****	ATP synthase subunit a, chloroplastic	IPR000568 (ATPase, F0 complex, subunit A), IPR001865 (Ribosomal protein S2), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015935 (small ribosomal subunit), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf08869g01017.1	sp|Q06327|LOX1_ARATH	*-*-	Linoleate 9S-lipoxygenase 1	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05381g03001.1			Unknown protein		
Niben101Scf02268g10004.1	sp|Q9NYT6|ZN226_HUMAN	*-*-	Zinc finger protein 226	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01927g06006.1	sp|A4GCR5|PROFE_OLEEU	***-	Profilin-2	IPR005455 (Profilin)	
Niben101Scf14101g01003.1	AT3G45580.1	*-**	RING/U-box protein with C6HC-type zinc finger LENGTH=408	IPR001841 (Zinc finger, RING-type), IPR002867 (Zinc finger, C6HC-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04410g04006.1	sp|P30362|ASPG_LUPAR	*-**	Isoaspartyl peptidase/L-asparaginase	IPR000246 (Peptidase T2, asparaginase 2), IPR000864 (Proteinase inhibitor I13, potato inhibitor I), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding), GO:0016787 (hydrolase activity)
Niben101Scf00774g00002.1	AT5G58000.1	*-*-	Reticulon family protein LENGTH=487	IPR003388 (Reticulon)	
Niben101Scf00494g08001.1	ref|XP_002522648.1|	--*-	Gamma-gliadin precursor, putative [Ricinus communis] gb|EEF39735.1| Gamma-gliadin precursor, putative [Ricinus communis]		
Niben101Scf01555g02004.1	AT4G00340.1	****	receptor-like protein kinase 4 LENGTH=818	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf05855g02007.1	gb|ADE61966.1|	*-*-	ubiquitin-protein ligase [Setaria italica]		
Niben101Scf00466g00012.1	AT2G21330.1	****	fructose-bisphosphate aldolase 1 LENGTH=399	IPR000741 (Fructose-bisphosphate aldolase, class-I), IPR013785 (Aldolase-type TIM barrel), IPR029768 (Fructose-bisphosphate aldolase class-I active site)	GO:0003824 (catalytic activity), GO:0004332 (fructose-bisphosphate aldolase activity), GO:0006096 (glycolytic process)
Niben101Scf10176g01001.1	emb|CDY03857.1|	***-	BnaC07g10820D [Brassica napus]	IPR012438 (Protein of unknown function DUF1639)	
Niben101Scf07712g03001.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf07123g00003.1	emb|CDY40034.1|	***-	BnaC05g12810D [Brassica napus]		
Niben101Scf02844g03013.1			Unknown protein		
Niben101Scf07965g02016.1	ref|XP_002515051.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF47605.1| conserved hypothetical protein [Ricinus communis]	IPR027944 (Sieve element occlusion, C-terminal)	
Niben101Scf02407g03018.1	sp|D2XNQ8|FLOT1_MEDTR	***-	Flotillin-like protein 1	IPR001107 (Band 7 protein)	
Niben101Scf02145g11012.1	sp|Q9ZS51|PMP22_ARATH	****	Peroxisomal membrane protein PMP22	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf05461g00010.1	ref|WP_013209790.1|	--*-	peptide ABC transporter permease [Ralstonia solanacearum] ref|YP_003749703.1| Binding-protein-dependent transport systems inner membrane component [Ralstonia solanacearum PSI07] emb|CBJ35072.2| Binding-protein-dependent transport systems inner membrane component [Ralstonia solanacearum PSI07]		
Niben101Scf04653g07009.1	sp|P51567|AFC2_ARATH	*-*-	Serine/threonine-protein kinase AFC2		
Niben101Scf10434g00015.1	ref|XP_003630360.1|	*-*-	Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] gb|AET04836.1| fatty acid amide hydrolase-like protein [Medicago truncatula]	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf00096g00005.1	emb|CDX67716.1|	***-	BnaA07g17560D [Brassica napus]		
Niben101Scf01810g01001.1			Unknown protein	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00395g02018.1	sp|P93194|RPK1_IPONI	****	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11874g01016.1	sp|Q09801|FIP1X_SCHPO	*-*-	Pre-mRNA polyadenylation factor fip1	IPR007854 (Pre-mRNA polyadenylation factor Fip1)	
Niben101Ctg11802g00003.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf13411g01001.1	sp|A2X1A1|ARFF_ORYSI	****	Auxin response factor 6	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf17044g01001.1	AT5G10270.1	****	cyclin-dependent kinase C;1 LENGTH=505	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02098g02033.1	AT4G12770.1	*-*-	Chaperone DnaJ-domain superfamily protein LENGTH=891	IPR001623 (DnaJ domain)	
Niben101Scf00168g07003.1	AT2G31820.1	***-	Ankyrin repeat family protein LENGTH=662	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf04713g04008.1			Unknown protein		
Niben101Scf00414g03007.1	gb|AES72341.2|	*-*-	RNA-metabolising metallo-beta-lactamase [Medicago truncatula]		
Niben101Scf01911g15015.1	sp|P48601|PRS4_DROME	*-*-	26S protease regulatory subunit 4	IPR003959 (ATPase, AAA-type, core), IPR005938 (AAA ATPase, CDC48 family), IPR009010 (Aspartate decarboxylase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029067 (CDC48 domain 2-like)	GO:0005524 (ATP binding), GO:0016787 (hydrolase activity)
Niben101Scf02563g02009.1	AT4G36660.1	***-	Protein of unknown function (DUF1195) LENGTH=179	IPR010608 (Protein of unknown function DUF1195)	
Niben101Scf01382g05006.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10300g00008.1	gb|AES93748.2|	***-	nucleotide-diphospho-sugar transferase superfamily protein [Medicago truncatula]		
Niben101Scf14636g01007.1	sp|Q9D967|MGDP1_MOUSE	****	Magnesium-dependent phosphatase 1	IPR010036 (Magnesium-dependent phosphatase-1, eukaryotic/arcaheal type), IPR023214 (HAD-like domain)	GO:0016791 (phosphatase activity)
Niben101Scf08926g01017.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07974g01003.1	AT5G11320.1	****	Flavin-binding monooxygenase family protein LENGTH=411	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04083g04003.1	AT1G79600.1	****	Protein kinase superfamily protein LENGTH=711	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00271g04029.1	sp|P93472|DIM_PEA	****	Delta(24)-sterol reductase	IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00110g05007.1	sp|A5DA00|SEC23_PICGU	****	Protein transport protein SEC23	IPR002035 (von Willebrand factor, type A), IPR006895 (Zinc finger, Sec23/Sec24-type), IPR006896 (Sec23/Sec24, trunk domain), IPR006900 (Sec23/Sec24, helical domain), IPR012990 (Sec23/Sec24 beta-sandwich), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0006886 (intracellular protein transport), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0008270 (zinc ion binding), GO:0030127 (COPII vesicle coat)
Niben101Scf08516g03003.1	sp|Q9FLS0|FB253_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf04220g01013.1	sp|P49297|ACEA_SOLLC	****	Isocitrate lyase	IPR006254 (Isocitrate lyase)	GO:0003824 (catalytic activity), GO:0004451 (isocitrate lyase activity), GO:0019752 (carboxylic acid metabolic process)
Niben101Scf04777g00001.1	sp|P42327|ADH2_GEOSE	***-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09112g02012.1	sp|Q9LZ00|MED4_ARATH	*-**	Mediator of RNA polymerase II transcription subunit 4	IPR019258 (Mediator complex, subunit Med4)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf00279g10001.1	AT4G35160.1	****	O-methyltransferase family protein LENGTH=382	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf08549g02009.1	ref|XP_007009141.1|	***-	WAS/WASL-interacting protein family member 2, putative isoform 1 [Theobroma cacao] gb|EOY17951.1| WAS/WASL-interacting protein family member 2, putative isoform 1 [Theobroma cacao]		
Niben101Scf02537g10009.1	sp|Q9UDV7|ZN282_HUMAN	--*-	Zinc finger protein 282	IPR007087 (Zinc finger, C2H2), IPR029789 (Protein TRANSPARENT TESTA 1 like)	GO:0046872 (metal ion binding)
Niben101Scf01210g00026.1			Unknown protein		
Niben101Scf02344g00005.1	AT5G19630.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=228	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Ctg14368g00003.1	AT1G45249.3	****	abscisic acid responsive elements-binding factor 2 LENGTH=427	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07914g01020.1	sp|Q9SV21|COPB1_ARATH	***-	Coatomer subunit beta-1	IPR016460 (Coatomer beta subunit (COPB1)), IPR029446 (Coatomer beta subunit, appendage platform domain)	GO:0005198 (structural molecule activity), GO:0005488 (binding), GO:0005737 (cytoplasm), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030126 (COPI vesicle coat)
Niben101Scf04494g00022.1	ref|NP_001042478.1|	***-	product [Oryza sativa Japonica Group]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf02011g10012.1	sp|Q9SGW3|PSD8A_ARATH	****	26S proteasome non-ATPase regulatory subunit 8 homolog A	IPR005062 (SAC3/GANP/Nin1/mts3/eIF-3 p25)	GO:0005838 (proteasome regulatory particle), GO:0006508 (proteolysis)
Niben101Scf05516g03003.1	sp|Q4VCM1|LCAT2_ARATH	*-*-	Phospholipid--sterol O-acyltransferase		
Niben101Scf00341g04003.1	ref|NP_001050595.1|	***-	OsJ_11625 [Oryza sativa Japonica Group]		
Niben101Scf06344g01019.1	AT2G36780.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf10509g01001.1	sp|P49101|CDPK2_MAIZE	*-*-	Calcium-dependent protein kinase 2		
Niben101Scf05036g01002.1	sp|Q9FFI5|NAC86_ARATH	*-*-	NAC domain-containing protein 86	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04608g01009.1	sp|P45725|PAL3_ARATH	*-**	Phenylalanine ammonia-lyase 3	IPR001106 (Aromatic amino acid lyase), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf15541g00006.1	sp|O48724|WEB1_ARATH	*-*-	Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1	IPR008545 (WEB family)	
Niben101Scf04328g00042.1	sp|B5YKI3|NUOB1_THEYD	****	NADH-quinone oxidoreductase subunit B 1	IPR006138 (NADH-ubiquinone oxidoreductase, 20 Kd subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0048038 (quinone binding), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09445g04018.1	AT5G60070.1	*-*-	ankyrin repeat family protein LENGTH=548	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf08242g00013.1	sp|P38824|COX23_YEAST	--*-	Cytochrome c oxidase-assembly factor COX23, mitochondrial	IPR009069 (Cysteine alpha-hairpin motif superfamily), IPR010625 (CHCH)	
Niben101Scf00254g04003.1	AT5G41470.1	***-	Nuclear transport factor 2 (NTF2) family protein LENGTH=277	IPR009959 (Polyketide cyclase SnoaL-like domain)	
Niben101Scf04081g03008.1	emb|CDY52185.1|	-**-	BnaAnng11260D [Brassica napus]		
Niben101Scf05631g00007.1	sp|Q6D5W6|MDTK_PECAS	-**-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf11512g01012.1	sp|Q5L0P8|RS16_GEOKA	*-*-	30S ribosomal protein S16	IPR000307 (Ribosomal protein S16), IPR023803 (Ribosomal protein S16 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf22084g00001.1	sp|Q9FJR0|RENT1_ARATH	*-*-	Regulator of nonsense transcripts 1 homolog		
Niben101Scf10385g00026.1	sp|Q852A1|EXPA7_ORYSJ	***-	Expansin-A7	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf09834g00001.1	sp|Q9ZUN4|ACCO1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02819g05019.1	sp|P49972|SR542_SOLLC	****	Signal recognition particle 54 kDa protein 2	IPR022941 (Signal recognition particle, SRP54 subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0048500 (signal recognition particle)
Niben101Scf02282g00001.1	sp|P51414|RL261_ARATH	****	60S ribosomal protein L26-1	IPR005756 (Ribosomal protein L26/L24P, eukaryotic/archaeal), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf02016g00009.1	gb|ABB47085.2|	--*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf00586g02002.1	sp|Q9LUV1|PMEI2_ARATH	-***	Pectinesterase inhibitor 2	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf11922g01015.1	tpg|DAA61107.1|	*-*-	TPA: hypothetical protein ZEAMMB73_465448 [Zea mays]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf02446g00009.1	sp|P53223|CAX4_YEAST	*-*-	Dolichyldiphosphatase	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Scf14950g00001.1	sp|Q9LZM4|WAKLQ_ARATH	--*-	Wall-associated receptor kinase-like 20	IPR013032 (EGF-like, conserved site), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf01750g10003.1			Unknown protein		
Niben101Scf01962g01006.1	sp|Q948T6|LGUL_ORYSJ	****	Lactoylglutathione lyase	IPR004361 (Glyoxalase I), IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	GO:0004462 (lactoylglutathione lyase activity), GO:0046872 (metal ion binding)
Niben101Scf16024g00021.1	sp|Q96522|PER45_ARATH	*-**	Peroxidase 45	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05989g04010.1	sp|Q9FZ70|FDL1_ARATH	*-*-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf14295g00015.1	sp|Q9FIW4|BGL42_ARATH	*-*-	Beta-glucosidase 42	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01585g01018.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09089g01026.1	AT2G36145.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=186		
Niben101Scf02425g02016.1	dbj|BAC06251.1|	*-*-	[Oryza sativa Japonica Group]		
Niben101Scf00856g01012.1	AT3G19770.1	***-	Vacuolar sorting protein 9 (VPS9) domain LENGTH=520	IPR003123 (Vacuolar sorting protein 9)	
Niben101Scf01926g06005.1	ref|NP_001154694.1|	--*-	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gb|AED90627.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]		
Niben101Scf02949g13003.1	sp|P78968|PPZ_SCHPO	***-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf03786g04004.1	ref|XP_003629913.1|	--*-	ATP synthase subunit-like protein [Medicago truncatula]		
Niben101Scf02807g11016.1	emb|CDY48281.1|	***-	BnaA05g10730D [Brassica napus]		
Niben101Scf01237g01015.1	AT2G40280.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=589	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf09447g01010.1	AT1G49890.1	***-	Family of unknown function (DUF566) LENGTH=659	IPR007573 (Protein of unknown function DUF566)	
Niben101Scf03197g06003.1	sp|P35469|CH601_RHIME	***-	60 kDa chaperonin 1	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding), GO:0042026 (protein refolding), GO:0044267 (cellular protein metabolic process)
Niben101Scf00317g11002.1	AT4G00150.1	*-*-	GRAS family transcription factor LENGTH=558	IPR005202 (Transcription factor GRAS)	
Niben101Scf09149g01008.1	sp|Q8LG89|BABL_ARATH	***-	Basic blue protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf07223g03028.1	emb|CDX80834.1|	***-	BnaC03g00880D [Brassica napus]		
Niben101Scf00546g03003.1	AT4G26540.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1091	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf05962g04012.1			Unknown protein		
Niben101Scf04037g01010.1			Unknown protein		
Niben101Scf06809g00029.1	sp|Q39255|SKP1A_ARATH	***-	SKP1-like protein 1A	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf04741g04004.1	sp|O05074|HLDE_HAEIN	***-	Bifunctional protein HldE	IPR002139 (Ribokinase), IPR029056 (Ribokinase-like)	GO:0004747 (ribokinase activity), GO:0006014 (D-ribose metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf02774g01003.1	sp|Q943Q3|HS166_ORYSJ	***-	16.6 kDa heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf18347g00004.1	AT4G23820.1	***-	Pectin lyase-like superfamily protein LENGTH=444	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00138g03003.1	AT3G26560.1	****	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001482 (Type II secretion system protein E), IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf05938g01049.1	AT3G56760.1	****	Protein kinase superfamily protein LENGTH=577	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06026g00002.1	sp|Q9MAI5|ERF79_ARATH	*-**	Ethylene-responsive transcription factor 8	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf13773g00027.1	sp|Q9ZUA5|VIT1_ARATH	***-	Vacuolar iron transporter 1	IPR008217 (Ccc1 family)	
Niben101Scf01734g01054.1	ref|XP_002527707.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF34666.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06734g02019.1	sp|A7FY87|SYT_CLOB1	****	Threonine--tRNA ligase	IPR002320 (Threonine-tRNA ligase, class IIa), IPR012675 (Beta-grasp domain)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004829 (threonine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006435 (threonyl-tRNA aminoacylation), GO:0016876 (ligase activity, forming aminoacyl-tRNA and related compounds), GO:0043039 (tRNA aminoacylation)
Niben101Scf00682g02012.1			Unknown protein		
Niben101Scf01553g00001.1	sp|Q9C9V6|Y1790_ARATH	*-*-	BTB/POZ domain-containing protein		
Niben101Scf07027g04033.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04995g09001.1	AT5G67320.1	***-	WD-40 repeat family protein LENGTH=613	IPR006594 (LisH dimerisation motif), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf01833g00001.1			Unknown protein		
Niben101Scf04787g02002.1	AT5G42650.1	***-	allene oxide synthase LENGTH=518	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf14233g00015.1			Unknown protein		
Niben101Scf05901g02004.1	sp|Q6NUJ5|PWP2B_HUMAN	--*-	PWWP domain-containing protein 2B	IPR000313 (PWWP domain)	
Niben101Scf06799g00004.1	sp|B9JCB6|RL9_AGRRK	*-*-	50S ribosomal protein L9	IPR000244 (Ribosomal protein L9)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07350g00006.1	sp|O22827|MOC2B_ARATH	****	Molybdopterin synthase catalytic subunit	IPR003448 (Molybdopterin biosynthesis MoaE)	GO:0006777 (Mo-molybdopterin cofactor biosynthetic process)
Niben101Scf00123g04002.1	ref|NP_001053190.1|	***-	product [Oryza sativa Japonica Group]	IPR006946 (Protein of unknown function DUF642)	
Niben101Scf03374g07003.1	sp|Q4QJM6|GLND_HAEI8	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf03473g01018.1	AT5G48150.1	*-*-	GRAS family transcription factor LENGTH=490	IPR005202 (Transcription factor GRAS), IPR030028 (Scarecrow-like protein 26/nodulation signalling pathway 2)	
Niben101Scf00298g02007.1	AT3G14080.1	***-	Small nuclear ribonucleoprotein family protein LENGTH=128	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf10768g00004.1	dbj|BAD93694.1|	--*-	acyltransferase-like protein [Nicotiana tabacum]		
Niben101Scf01045g00014.1	AT1G13700.1	***-	6-phosphogluconolactonase 1 LENGTH=268	IPR006148 (Glucosamine/galactosamine-6-phosphate isomerase)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf03403g01021.1	sp|Q9ZVX5|PP156_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04804g03016.1	sp|O60287|NPA1P_HUMAN	*-*-	Nucleolar pre-ribosomal-associated protein 1	IPR021714 (Nucleolar pre-ribosomal-associated protein 1, N-terminal)	
Niben101Scf05656g01004.1			Unknown protein		
Niben101Scf08653g01005.1	sp|P10639|THIO_MOUSE	--*-	Thioredoxin	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf35412g00008.1	sp|Q9SXZ2|FT_ARATH	***-	Protein FLOWERING LOCUS T	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf08274g00009.1	sp|Q01559|HMDH_NICSY	*-**	3-hydroxy-3-methylglutaryl-coenzyme A reductase	IPR002202 (Hydroxymethylglutaryl-CoA reductase, class I/II), IPR023074 (Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain)	GO:0004420 (hydroxymethylglutaryl-CoA reductase (NADPH) activity), GO:0015936 (coenzyme A metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01908g01004.1	sp|P81392|MYB06_ANTMA	***-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02077g03007.1	sp|Q8BT14|CNOT4_MOUSE	*-*-	CCR4-NOT transcription complex subunit 4	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Ctg15872g00001.1	sp|Q3UVK0|ERMP1_MOUSE	*-*-	Endoplasmic reticulum metallopeptidase 1	IPR007484 (Peptidase M28)	
Niben101Scf07364g00010.1	sp|O48723|PLP2_ARATH	*-*-	Patatin-like protein 2	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0008152 (metabolic process)
Niben101Scf09559g03010.1	sp|Q8S8N1|CLE7_ARATH	-**-	CLAVATA3/ESR (CLE)-related protein 7		
Niben101Scf00414g00002.1	sp|Q80ZD0|GBB5_TAMST	*-**	Guanine nucleotide-binding protein subunit beta-5	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00956g00004.1	sp|Q9UPQ8|DOLK_HUMAN	*-**	Dolichol kinase	IPR026566 (Dolichol kinase)	GO:0004168 (dolichol kinase activity), GO:0030176 (integral component of endoplasmic reticulum membrane), GO:0043048 (dolichyl monophosphate biosynthetic process)
Niben101Scf00058g02009.1	sp|Q75KR1|PPDK2_ORYSJ	****	Pyruvate, phosphate dikinase 2	IPR010121 (Pyruvate, phosphate dikinase), IPR015813 (Pyruvate/Phosphoenolpyruvate kinase-like domain)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0006090 (pyruvate metabolic process), GO:0016301 (kinase activity), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0050242 (pyruvate, phosphate dikinase activity)
Niben101Scf10436g00008.1	sp|Q06450|ATP5E_IPOBA	****	ATP synthase subunit epsilon, mitochondrial	IPR006721 (ATPase, F1 complex, epsilon  subunit, mitochondrial)	GO:0000275 (mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)), GO:0015986 (ATP synthesis coupled proton transport), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf05133g01015.1	sp|Q9SS81|PP221_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01398g00001.1	sp|P46290|RL31_NICGU	*-*-	60S ribosomal protein L31	IPR000054 (Ribosomal protein L31e), IPR023621 (Ribosomal protein L31e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07023g00001.1	AT5G07050.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=402	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf02775g00002.1	sp|O80337|EF100_ARATH	****	Ethylene-responsive transcription factor 1A	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00790g00004.1	AT3G14570.1	*-**	glucan synthase-like 4 LENGTH=1976	IPR003440 (Glycosyl transferase, family 48)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf19504g00003.1	sp|P29162|ASOL_TOBAC	***-	L-ascorbate oxidase homolog	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03449g01014.1	sp|Q02040|AK17A_HUMAN	--*-	A-kinase anchor protein 17A		
Niben101Scf01119g06002.1	AT4G27540.1	***-	prenylated RAB acceptor 1.H LENGTH=241	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf05645g07006.1			Unknown protein		
Niben101Scf01517g06009.1	sp|P46417|GSTX3_SOYBN	***-	Glutathione S-transferase 3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Ctg12258g00001.1	AT3G43520.1	***-	Transmembrane proteins 14C LENGTH=240	IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane)
Niben101Scf07512g00008.1	sp|Q2IBB2|CTTB2_RHIFE	--*-	Cortactin-binding protein 2		
Niben101Scf03018g12005.1	sp|Q8GYP6|PPR49_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06545g02006.1	AT2G46420.1	***-	Plant protein 1589 of unknown function LENGTH=363	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf03918g00001.1	sp|Q9C652|RBP1_ARATH	*-**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06566g00018.1	AT4G31170.1	*-**	Protein kinase superfamily protein LENGTH=412	IPR002912 (ACT domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07005g00024.1	ref|XP_007035917.1|	*-*-	Calcium-dependent lipid-binding family protein isoform 4 [Theobroma cacao] gb|EOY06843.1| Calcium-dependent lipid-binding family protein isoform 4 [Theobroma cacao]	IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf23152g00007.1	sp|Q9SUT9|RTNLB_ARATH	***-	Reticulon-like protein B2	IPR003388 (Reticulon)	
Niben101Scf08804g03003.1	AT1G48480.1	****	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf19133g00007.1	sp|Q9LSA6|PUB29_ARATH	***-	U-box domain-containing protein 29	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf02268g13006.1			Unknown protein		
Niben101Scf12983g01055.1	AT5G17560.1	*-*-	BolA-like family protein LENGTH=177	IPR002634 (BolA protein)	
Niben101Scf05134g01002.1	sp|Q9LE73|NUDT4_ARATH	****	Nudix hydrolase 4	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf09271g00003.1	sp|A2YWA6|ZHD2_ORYSI	*-*-	Zinc-finger homeodomain protein 2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf02012g01011.1	sp|Q5HQ76|ODPA_STAEQ	***-	Pyruvate dehydrogenase E1 component subunit alpha	IPR001017 (Dehydrogenase, E1 component), IPR029061 (Thiamin diphosphate-binding fold)	GO:0008152 (metabolic process), GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor)
Niben101Scf05061g02010.1	sp|Q9M5P2|SCAM3_ARATH	****	Secretory carrier-associated membrane protein 3	IPR007273 (SCAMP)	GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf16332g01008.1	AT5G64816.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=130		
Niben101Scf03804g02002.1	emb|CDY43290.1|	***-	BnaC06g01780D [Brassica napus]		
Niben101Scf07168g02008.1	sp|Q4WT34|PRP46_ASPFU	*-*-	Pre-mRNA-splicing factor prp46	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01596g12002.1	emb|CDX96451.1|	***-	BnaA07g30620D [Brassica napus]		
Niben101Scf00854g06025.1	sp|A6MMP9|RK2_DIOEL	*-*-	50S ribosomal protein L2, chloroplastic	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02738g03013.1	AT3G02380.1	***-	CONSTANS-like 2 LENGTH=347	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf01491g02005.1	sp|A6UWV8|RS5_META3	****	30S ribosomal protein S5	IPR000851 (Ribosomal protein S5), IPR014720 (Double-stranded RNA-binding domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf12364g00002.1	ref|XP_010097182.1|	--*-	Calcineurin subunit B [Morus notabilis] gb|EXB67249.1| Calcineurin subunit B [Morus notabilis]		
Niben101Scf08797g00012.1	sp|O22585|AMYB_MEDSA	****	Beta-amylase	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf22058g00004.1	sp|Q9LJW0|PHO19_ARATH	***-	Phosphate transporter PHO1 homolog 9	IPR004331 (SPX, N-terminal)	
Niben101Scf02072g01004.1	sp|P36049|EBP2_YEAST	*-*-	rRNA-processing protein EBP2	IPR008610 (Eukaryotic rRNA processing)	
Niben101Scf02757g02004.1	AT1G67290.1	***-	glyoxal oxidase-related protein LENGTH=615	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR014756 (Immunoglobulin E-set), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf05964g00003.1	sp|Q9SDG8|AGO4A_ORYSJ	*-*-	Protein argonaute 4A		
Niben101Scf00595g05010.1	emb|CBM56257.1|	*-**	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf12670g00009.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05954g02012.1	sp|Q08508|ACCO4_PETHY	*-*-	1-aminocyclopropane-1-carboxylate oxidase 4	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02937g09017.1	ref|XP_007044794.1|	***-	Cyclin-related, putative isoform 2 [Theobroma cacao] gb|EOY00626.1| Cyclin-related, putative isoform 2 [Theobroma cacao]		
Niben101Scf05491g04003.1	AT3G44510.2	***-	alpha/beta-Hydrolases superfamily protein LENGTH=325	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00480g01009.1	AT4G32480.1	*-*-	Protein of unknown function (DUF506) LENGTH=287	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf08126g00007.1			Unknown protein		
Niben101Scf03259g00001.1	sp|Q9LRR2|TPS17_ARATH	*-**	Terpenoid synthase 17	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf16580g00007.1	AT5G19820.1	***-	ARM repeat superfamily protein LENGTH=1116	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00974g02010.1	sp|O48818|EXPA4_ARATH	***-	Expansin-A4	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf00904g04003.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf04103g11002.1	sp|B9MJY9|PRMA_CALBD	--**	Ribosomal protein L11 methyltransferase	IPR010456 (Ribosomal L11 methyltransferase, PrmA), IPR010675 (Bicoid-interacting 3), IPR024160 (Bin3-type S-adenosyl-L-methionine binding domain), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005737 (cytoplasm), GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity), GO:0008276 (protein methyltransferase activity)
Niben101Scf11361g03004.1	sp|Q1JPL7|PME18_ARATH	****	Pectinesterase/pectinesterase inhibitor 18	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf12881g00010.1	AT3G53260.1	****	phenylalanine ammonia-lyase 2 LENGTH=717	IPR001106 (Aromatic amino acid lyase), IPR023144 (Phenylalanine ammonia-lyase, shielding domain), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0006559 (L-phenylalanine catabolic process), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf00278g03019.1	AT5G45610.1	*-*-	protein dimerizations LENGTH=646		
Niben101Scf03307g08004.1	sp|Q1ATH8|PDXH_RUBXD	*-**	Pyridoxine/pyridoxamine 5'-phosphate oxidase	IPR004443 (YjeF N-terminal domain), IPR012349 (FMN-binding split barrel)	GO:0004733 (pyridoxamine-phosphate oxidase activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04504g03012.1	AT5G54280.2	****	myosin 2 LENGTH=1220	IPR000048 (IQ motif, EF-hand binding site), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf14714g00001.1	dbj|BAA13684.1|	*-*-	AR781 [Arabidopsis thaliana]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf05891g00004.1			Unknown protein		
Niben101Scf05536g01015.1	gb|KEH42602.1|	--*-	GRF zinc finger protein [Medicago truncatula]		
Niben101Scf08231g00007.1			Unknown protein	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf05226g02007.1	AT1G76270.1	***-	O-fucosyltransferase family protein LENGTH=572	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf05846g00015.1	AT4G38840.1	***-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00883g11002.1	AT4G34760.1	***-	SAUR-like auxin-responsive protein family LENGTH=107	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf06394g04009.1	sp|Q9C9N6|PMI2_ARATH	***-	Protein PLASTID MOVEMENT IMPAIRED 2	IPR008545 (WEB family)	
Niben101Scf04921g01028.1	AT5G06470.1	*-*-	Glutaredoxin family protein LENGTH=239	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02849g09002.1	gb|KEH32781.1|	*-**	B3 DNA-binding domain protein [Medicago truncatula]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf00163g08018.1	AT5G51100.1	****	Fe superoxide dismutase 2 LENGTH=305	IPR001189 (Manganese/iron superoxide dismutase)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01341g00002.1	sp|P22309|UD11_HUMAN	*-*-	UDP-glucuronosyltransferase 1-1	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf07042g00003.1	sp|Q4P331|IF4A_USTMA	****	ATP-dependent RNA helicase eIF4A	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf02432g00010.1	AT5G23310.1	****	Fe superoxide dismutase 3 LENGTH=263	IPR001189 (Manganese/iron superoxide dismutase)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01912g01003.1	sp|Q1MPU3|RL7_LAWIP	***-	50S ribosomal protein L7/L12	IPR000206 (Ribosomal protein L7/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00493g00016.1	ref|XP_003627297.1|	***-	Serine rich protein [Medicago truncatula] emb|CAJ00007.1| serine rich protein [Medicago truncatula] gb|AET01773.1| transmembrane protein, putative [Medicago truncatula]		
Niben101Scf08206g01017.1	sp|Q9LPI5|CID11_ARATH	*-*-	Polyadenylate-binding protein-interacting protein 11	IPR009818 (Ataxin-2, C-terminal)	
Niben101Scf00233g00006.1	sp|P40690|ALKE_BABBO	*-*-	Aldo-keto reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf15381g00013.1	sp|Q8TXZ3|IF1A_METKA	*-**	Translation initiation factor 1A	IPR001253 (Translation initiation factor 1A (eIF-1A))	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf11895g00002.1	sp|Q9CR26|VTA1_MOUSE	--*-	Vacuolar protein sorting-associated protein VTA1 homolog	IPR023175 (Vacuolar protein sorting-associate protein Vta1/Callose synthase, N-terminal domain)	
Niben101Scf04973g01007.1	gb|KEH43777.1|	--*-	Serine/Threonine kinase [Medicago truncatula]	IPR017986 (WD40-repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf07288g12011.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00717g02017.1	AT4G10220.1	***-	Protein of Unknown Function (DUF239) LENGTH=400	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf14513g00004.1	gb|AAK13103.1|AC078839_19	*-**	Helicase-like protein [Oryza sativa Japonica Group]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf01649g00003.1	sp|O22881|POT2_ARATH	****	Potassium transporter 2	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf00416g00007.1	AT5G35735.1	***-	Auxin-responsive family protein LENGTH=404	IPR005018 (DOMON domain), IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf02133g08012.1	AT4G26620.1	*-*-	Sucrase/ferredoxin-like family protein LENGTH=443		
Niben101Scf05017g05014.1	sp|P23432|E13C_TOBAC	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06295g01004.1	ref|XP_002513225.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF49216.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02508g01007.1	ref|NP_193092.1|	-**-	protein unfertilized embryo sac 15 [Arabidopsis thaliana] emb|CAB41114.1| putative protein [Arabidopsis thaliana] emb|CAB78398.1| putative protein [Arabidopsis thaliana] dbj|BAC42956.1| unknown protein [Arabidopsis thaliana] gb|AAO50461.1| unknown protein [Arabidopsis thaliana] gb|AEE83293.1| protein unfertilized embryo sac 15 [Arabidopsis thaliana]		
Niben101Scf01731g10001.1	ref|NP_001148114.1|	****	transferase, transferring glycosyl groups precursor [Zea mays] gb|ACG29772.1| transferase, transferring glycosyl groups [Zea mays]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf00226g01005.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf11830g00001.1			Unknown protein		
Niben101Scf04143g00001.1	AT5G64420.1	****	DNA polymerase V family LENGTH=1306	IPR007015 (DNA polymerase V), IPR016024 (Armadillo-type fold)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0005488 (binding), GO:0006351 (transcription, DNA-templated)
Niben101Scf17802g01004.1	sp|Q9FI27|TPS20_ARATH	--**	Terpenoid synthase 20	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf02250g00007.1	ref|XP_002525596.1|	****	hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gb|EEF36714.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01005g01014.1	ref|XP_002522625.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF39712.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02436g03009.1	AT4G21750.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=762	IPR002913 (START domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008289 (lipid binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00737g01010.1	emb|CDX77544.1|	***-	BnaA07g06820D [Brassica napus]		
Niben101Scf06283g00003.1	gb|AES68730.2|	***-	DUF3128 family protein [Medicago truncatula]	IPR021475 (Protein of unknown function DUF3128)	
Niben101Scf08665g01006.1	sp|P44933|KEFX_HAEIN	****	Glutathione-regulated potassium-efflux system protein	IPR006153 (Cation/H+ exchanger), IPR016040 (NAD(P)-binding domain)	GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0008324 (cation transmembrane transporter activity), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02346g07005.1	sp|Q8BGK6|YLAT2_MOUSE	****	Y+L amino acid transporter 2	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf02798g01062.1	ref|XP_002886859.1|	--*-	psi P700 apoprotein A1 [Arabidopsis lyrata subsp. lyrata] gb|EFH63118.1| psi P700 apoprotein A1 [Arabidopsis lyrata subsp. lyrata]		
Niben101Scf01787g00033.1	sp|B0ULK7|NUOD_METS4	****	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02466g02003.1	gb|KEH39432.1|	*-*-	GTP-binding protein Obg/CgtA protein [Medicago truncatula]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf01931g00003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01451g05003.1	sp|Q9LHE5|TO401_ARATH	****	Mitochondrial import receptor subunit TOM40-1	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0055085 (transmembrane transport)
Niben101Scf03797g00003.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03226g04016.1	AT1G64300.1	****	Protein kinase family protein LENGTH=717	IPR010632 (Domain of unknown function DUF1221), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06677g01008.1	sp|Q17TI5|BRX_ARATH	***-	Protein BREVIS RADIX	IPR013591 (Brevis radix (BRX) domain), IPR027988 (Transcription factor  BREVIS RADIX, N-terminal domain)	
Niben101Scf03670g04008.1	AT1G09750.1	***-	Eukaryotic aspartyl protease family protein LENGTH=449	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf19719g00001.1	sp|Q9FG38|SNX1_ARATH	***-	Sorting nexin 1	IPR001683 (Phox homologous domain), IPR015404 (Vps5 C-terminal)	GO:0035091 (phosphatidylinositol binding)
Niben101Scf11497g02010.1	AT2G31940.1	***-	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=120		
Niben101Scf00635g08006.1	sp|Q9D081|ALG14_MOUSE	***-	UDP-N-acetylglucosamine transferase subunit ALG14 homolog	IPR013969 (Oligosaccharide biosynthesis protein Alg14-like)	
Niben101Scf04063g00013.1	sp|Q3T0R4|DRS7B_BOVIN	****	Dehydrogenase/reductase SDR family member 7B	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf05540g00015.1	sp|Q8RXQ1|TBL35_ARATH	***-	Protein trichome birefringence-like 35	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf03597g00013.1	sp|Q9Z2Y8|PROSC_MOUSE	***-	Proline synthase co-transcribed bacterial homolog protein	IPR011078 (Uncharacterised protein family UPF0001), IPR029066 (PLP-binding barrel)	
Niben101Scf03438g04013.1	ref|WP_026731178.1|	*-*-	acetoacetate decarboxylase [Fischerella sp. PCC 9605]		
Niben101Scf00375g03010.1	sp|Q8S340|PPA22_ARATH	***-	Purple acid phosphatase 22	IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf00638g01024.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00231g06001.1	sp|P65233|KPRS_MYCBO	***-	Ribose-phosphate pyrophosphokinase	IPR029057 (Phosphoribosyltransferase-like), IPR029099 (Ribose-phosphate pyrophosphokinase, N-terminal domain)	GO:0009116 (nucleoside metabolic process)
Niben101Scf09590g03007.1	sp|Q08507|ACCO3_PETHY	*-*-	1-aminocyclopropane-1-carboxylate oxidase 3	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf00314g02022.1			Unknown protein		
Niben101Scf01508g01012.1	tpg|DAA39003.1|	*-*-	TPA: hypothetical protein ZEAMMB73_375277 [Zea mays]		
Niben101Scf01264g00006.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf12472g00003.1	sp|F4K687|NMNAT_ARATH	*-*-	Nicotinamide mononucleotide adenylyltransferase	IPR005248 (Probable nicotinate-nucleotide adenylyltransferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0009435 (NAD biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf04113g03002.1			Unknown protein		
Niben101Scf08231g00006.1	sp|Q6PA14|STK4_XENLA	*-**	Serine/threonine-protein kinase 4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05506g04001.1	ref|WP_029292314.1|	***-	glyoxalase [Pseudomonas fluorescens]	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf35487g00004.1	AT5G05080.1	***-	ubiquitin-conjugating enzyme 22 LENGTH=251	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf02588g00006.1	sp|Q4KYM5|CCD42_ORYSJ	***-	Cyclin-D4-2	IPR013763 (Cyclin-like)	
Niben101Scf03045g10003.1	sp|P0A719|KPRS_ECO57	***-	Ribose-phosphate pyrophosphokinase	IPR029057 (Phosphoribosyltransferase-like), IPR029099 (Ribose-phosphate pyrophosphokinase, N-terminal domain)	GO:0009116 (nucleoside metabolic process)
Niben101Scf03384g00001.1	AT5G43260.1	***-	chaperone protein dnaJ-related LENGTH=97	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf04036g05010.1	AT3G14930.1	****	Uroporphyrinogen decarboxylase LENGTH=418	IPR000257 (Uroporphyrinogen decarboxylase (URO-D))	GO:0004853 (uroporphyrinogen decarboxylase activity), GO:0006779 (porphyrin-containing compound biosynthetic process)
Niben101Scf02437g08005.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07713g00020.1	AT5G55530.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=405	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00307g03006.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf02702g00006.1	tpg|DAA59134.1|	*-**	TPA: putative RNA binding domain family protein [Zea mays]	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00317g04016.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf06461g01002.1	sp|Q93Z08|E136_ARATH	***-	Glucan endo-1,3-beta-glucosidase 6	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08782g00003.1	sp|P27898|MYBP_MAIZE	*-*-	Myb-related protein P	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01212g03005.1	sp|Q8LDC8|ERF92_ARATH	*-**	Ethylene-responsive transcription factor 1B	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg16317g00001.1	sp|Q9FHM9|EXOL3_ARATH	***-	Protein EXORDIUM-like 3	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf06236g00008.1	AT2G45290.1	****	Transketolase LENGTH=741	IPR005478 (Transketolase, bacterial-like), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0004802 (transketolase activity), GO:0008152 (metabolic process)
Niben101Ctg14678g00001.1	sp|Q9ST62|NDB1_SOLTU	*-**	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial	IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00788g03017.1	AT4G31590.1	***-	Cellulose-synthase-like C5 LENGTH=692	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf01571g05001.1	gb|AAA34063.1|	*-*-	cysteine-rich extensin-like protein [Nicotiana tabacum]		
Niben101Scf11723g01003.1	sp|P33487|ABP1_ARATH	***-	Auxin-binding protein 1	IPR000526 (Auxin-binding protein)	GO:0004872 (receptor activity), GO:0005788 (endoplasmic reticulum lumen)
Niben101Scf02831g07006.1	AT1G17620.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=264	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf02803g01002.1	sp|P49692|RL7A1_ARATH	*-*-	60S ribosomal protein L7a-1		
Niben101Scf08797g00013.1	sp|Q3L8U1|CHD9_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 9	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf06518g01010.1	AT1G45201.1	*-*-	triacylglycerol lipase-like 1 LENGTH=479	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03733g06004.1	sp|A7X2Y0|DNAJ_STAA1	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf01226g02011.1	gb|KEH42602.1|	--**	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf08178g00009.1	AT4G12490.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=182	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf06807g02012.1	sp|Q9XZE5|PP2AA_DICDI	***-	Serine/threonine-protein phosphatase 2A catalytic subunit A	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf09547g01006.1	sp|O43001|SYJ1_SCHPO	*-**	Inositol-1,4,5-trisphosphate 5-phosphatase 1	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf02381g04027.1			Unknown protein		
Niben101Scf04881g00001.1	AT4G18210.1	***-	purine permease 10 LENGTH=390	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf00280g01007.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf15496g01011.1	sp|Q8VZ17|SUVH6_ARATH	*-**	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6	IPR003105 (SRA-YDG), IPR015947 (PUA-like domain)	GO:0042393 (histone binding)
Niben101Scf02622g12036.1	sp|P0CC94|NU2C1_NANDO	*-**	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic	IPR000834 (Peptidase M14, carboxypeptidase A), IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit), IPR005717 (Ribosomal protein S7, bacterial/organellar-type), IPR023798 (Ribosomal protein S7 domain)	GO:0003735 (structural constituent of ribosome), GO:0004181 (metallocarboxypeptidase activity), GO:0006412 (translation), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding), GO:0015935 (small ribosomal subunit)
Niben101Scf02535g03004.1			Unknown protein		
Niben101Scf03152g00021.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf08278g00004.1	sp|P51965|UB2E1_HUMAN	***-	Ubiquitin-conjugating enzyme E2 E1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf00856g00004.1	sp|Q5E9A3|PCBP1_BOVIN	--**	Poly(rC)-binding protein 1	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf01701g03005.1	ref|XP_002507484.1|	--**	obg family gtp-binding protein [Micromonas sp. RCC299] gb|ACO68742.1| obg family gtp-binding protein [Micromonas sp. RCC299]	IPR006169 (GTP1/OBG domain)	GO:0005525 (GTP binding)
Niben101Scf00682g04013.1	sp|P31212|THD1_SOLTU	****	Threonine dehydratase biosynthetic	IPR001721 (ACT-like domain), IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme), IPR005787 (Threonine dehydratase, biosynthetic)	GO:0004794 (L-threonine ammonia-lyase activity), GO:0006520 (cellular amino acid metabolic process), GO:0009097 (isoleucine biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01273g01006.1	emb|CDY51348.1|	*-*-	BnaC02g45770D [Brassica napus]	IPR004263 (Exostosin-like)	
Niben101Scf04967g01005.1	sp|J9RYI6|DCVR_CUCSA	***-	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic	IPR016040 (NAD(P)-binding domain)	
Niben101Scf01971g00007.1	AT3G05680.2	*-*-	embryo defective 2016 LENGTH=2152	IPR025558 (Domain of unknown function DUF4283), IPR026736 (Protein virilizer)	
Niben101Scf04782g02007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03971g02001.1	sp|Q94G86|ALL9_OLEEU	*-*-	Glucan endo-1,3-beta-D-glucosidase	IPR012946 (X8 domain)	
Niben101Scf02502g07009.1	sp|Q50940|CAH_NEIGO	***-	Carbonic anhydrase	IPR001148 (Alpha carbonic anhydrase), IPR023561 (Carbonic anhydrase, alpha-class)	GO:0004089 (carbonate dehydratase activity), GO:0006730 (one-carbon metabolic process), GO:0008270 (zinc ion binding)
Niben101Scf03280g00002.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf04187g00029.1	sp|O49399|PP321_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf15326g00018.1	sp|O14653|GOSR2_HUMAN	****	Golgi SNAP receptor complex member 2	IPR027027 (GOSR2/Membrin/Bos1)	GO:0005795 (Golgi stack), GO:0006810 (transport)
Niben101Scf02705g01021.1	AT4G17010.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=160		
Niben101Scf04794g00022.1	gb|AAM52341.1|	*-*-	fertility restorer-like protein [Petunia x hybrida]		
Niben101Scf01993g03020.1			Unknown protein		
Niben101Scf01870g00004.1			Unknown protein		
Niben101Scf01710g01013.1	AT2G42590.3	***-	general regulatory factor 9 LENGTH=276	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf14233g00014.1	AT5G61910.1	*-*-	DCD (Development and Cell Death) domain protein LENGTH=738	IPR013989 (Development/cell death domain)	
Niben101Scf03351g05016.1	sp|Q8VZC9|VPS25_ARATH	***-	Vacuolar protein sorting-associated protein 25	IPR008570 (ESCRT-II complex, vps25 subunit), IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf09230g04009.1			Unknown protein		
Niben101Scf07475g00005.1	sp|Q253T6|DNAJ_CHLFF	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR026894 (DNAJ-containing protein, X-domain)	
Niben101Scf09172g02042.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02468g13002.1			Unknown protein		
Niben101Scf02203g01010.1	sp|Q332R7|YCF2_LACSA	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf13676g02009.1	sp|O23081|CRK41_ARATH	*-**	Cysteine-rich receptor-like protein kinase 41	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf39082g00002.1	sp|Q8LGU6|CD27B_ARATH	*-*-	Cell division cycle protein 27 homolog B	IPR013026 (Tetratricopeptide repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf03523g00003.1	ref|XP_002515319.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF47303.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07678g02010.1	sp|Q40704|MADS3_ORYSJ	*-*-	MADS-box transcription factor 3	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf06343g00007.1	sp|O59952|LIP_THELA	--*-	Lipase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf04018g07005.1	sp|Q5XEM9|ALFL5_ARATH	*-*-	PHD finger protein ALFIN-LIKE 5	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR021998 (Alfin)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0042393 (histone binding)
Niben101Scf05998g00011.1	sp|Q9UBS8|RNF14_HUMAN	***-	E3 ubiquitin-protein ligase RNF14	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05437g01008.1	sp|P70289|PTPRV_MOUSE	--*-	Receptor-type tyrosine-protein phosphatase V		
Niben101Scf06382g02015.1	AT3G18670.1	*-*-	Ankyrin repeat family protein LENGTH=598	IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	
Niben101Scf00578g07005.1	sp|Q7KU24|CHD1_DROME	*-**	Chromodomain-helicase-DNA-binding protein 1	IPR000330 (SNF2-related), IPR001487 (Bromodomain), IPR001650 (Helicase, C-terminal), IPR014978 (Glutamine-Leucine-Glutamine, QLQ), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Ctg16385g00003.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01964g08021.1	sp|Q54UU1|TPPC4_DICDI	***-	Trafficking protein particle complex subunit 4	IPR007233 (Sybindin-like protein)	GO:0005801 (cis-Golgi network), GO:0006810 (transport), GO:0006888 (ER to Golgi vesicle-mediated transport)
Niben101Scf03197g06002.1	sp|Q8VBV4|FBXW7_MOUSE	--*-	F-box/WD repeat-containing protein 7	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02439g00016.1			Unknown protein		
Niben101Scf02195g08004.1	AT3G14270.1	*-**	phosphatidylinositol-4-phosphate 5-kinase family protein LENGTH=1791	IPR002423 (Chaperonin Cpn60/TCP-1), IPR002498 (Phosphatidylinositol-4-phosphate 5-kinase, core), IPR027409 (GroEL-like apical domain), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0044267 (cellular protein metabolic process), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf02074g05001.1	sp|Q5VJ39|CYB_ARCCA	*-*-	Cytochrome b	IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0016020 (membrane), GO:0022904 (respiratory electron transport chain)
Niben101Scf01237g05003.1	sp|F4IH21|TBL33_ARATH	***-	Protein trichome birefringence-like 33	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf11215g00029.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf14526g02001.1			Unknown protein		
Niben101Scf02007g06001.1	AT5G13110.1	****	glucose-6-phosphate dehydrogenase 2 LENGTH=596	IPR001282 (Glucose-6-phosphate dehydrogenase)	GO:0004345 (glucose-6-phosphate dehydrogenase activity), GO:0006006 (glucose metabolic process), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10785g01002.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05610g01007.1	sp|Q42404|RU17_ARATH	*-*-	U1 small nuclear ribonucleoprotein 70 kDa	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR022023 (U1 small nuclear ribonucleoprotein of 70kDa N-terminal)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf20768g00032.1	gb|AER41601.1|	*-*-	peroxiredoxin [Oryza glaberrima]		
Niben101Scf01688g02006.1	sp|Q8L831|NUDT3_ARATH	***-	Nudix hydrolase 3		
Niben101Scf09363g00006.1	sp|Q6P6X9|NUP53_DANRE	*-*-	Nucleoporin NUP53	IPR007846 (RNA-recognition motif (RRM) Nup35-type domain), IPR017389 (Nucleoporin, NUP53)	GO:0031965 (nuclear membrane), GO:0055085 (transmembrane transport)
Niben101Scf00893g01017.1	ref|NP_565550.1|	*-**	protein RER1C1 [Arabidopsis thaliana] RecName: Full=Protein RER1C; Short=AtRER1C [Arabidopsis thaliana] dbj|BAA33862.1| AtRER1C [Arabidopsis thaliana] gb|AAL47450.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAB87102.2| putative integral membrane protein [Arabidopsis thaliana] gb|AAM19906.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAM63458.1| putative integral membrane protein [Arabidopsis thaliana] gb|AEC07439.1| protein RER1C1 [Arabidopsis thaliana]	IPR004932 (Retrieval of early ER protein Rer1)	GO:0016021 (integral component of membrane)
Niben101Scf00457g01003.1	sp|Q03461|NLTP2_TOBAC	****	Non-specific lipid-transfer protein 2	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf01072g01019.1	sp|Q92889|XPF_HUMAN	*-**	DNA repair endonuclease XPF	IPR010994 (RuvA domain 2-like), IPR011335 (Restriction endonuclease  type II-like)	GO:0003677 (DNA binding), GO:0004518 (nuclease activity), GO:0006259 (DNA metabolic process)
Niben101Scf00860g01013.1	AT3G54190.1	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=467	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04377g06007.1	gb|KEH22373.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf05483g07003.1	sp|Q6EP49|MAD27_ORYSJ	*-*-	MADS-box transcription factor 27	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf12017g05020.1	sp|B3QT85|SYM_CHLT3	--**	Methionine--tRNA ligase	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0000049 (tRNA binding)
Niben101Scf00074g00009.1	ref|WP_026719171.1|	***-	photosystem reaction center subunit H [Fischerella sp. PCC 9431]	IPR011033 (PRC-barrel-like)	
Niben101Scf00725g07016.1	sp|Q68FI1|L14BA_XENLA	*-*-	Protein LSM14 homolog B-A	IPR010920 (Like-Sm (LSM) domain), IPR019050 (FDF domain), IPR025761 (FFD box), IPR025762 (DFDF domain), IPR025768 (TFG box)	
Niben101Scf00033g00002.1	AT1G74240.1	***-	Mitochondrial substrate carrier family protein LENGTH=364	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf08640g00004.1	AT4G16510.1	*-*-	YbaK/aminoacyl-tRNA synthetase-associated domain LENGTH=232		
Niben101Scf01111g05001.1	gb|KEH31712.1|	*-*-	calmodulin-binding protein [Medicago truncatula]	IPR025064 (Domain of unknown function DUF4005)	
Niben101Scf09417g01013.1	gb|AAA34063.1|	*-*-	cysteine-rich extensin-like protein [Nicotiana tabacum]		
Niben101Scf04328g00041.1	sp|Q3AC77|NUOA_CARHZ	****	NADH-quinone oxidoreductase subunit A	IPR000440 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02632g00004.1			Unknown protein		
Niben101Scf08804g03049.1	sp|Q58DG6|FXL20_BOVIN	*-*-	F-box/LRR-repeat protein 20	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf00801g01004.1	sp|Q9M1K2|PI5K4_ARATH	****	Phosphatidylinositol 4-phosphate 5-kinase 4	IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf04782g01007.1	gb|AID55042.1|	*-*-	disease resistance protein, partial [Solanum habrochaites]		
Niben101Scf04237g00007.1			Unknown protein		
Niben101Scf01871g00003.1	sp|Q9M7N6|MAF1_SOLLC	*-*-	MFP1 attachment factor 1	IPR025265 (WPP domain)	
Niben101Scf05617g00025.1	sp|Q8N0W3|FUK_HUMAN	*-**	L-fucose kinase	IPR006206 (Mevalonate/galactokinase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00495g02014.1	gb|KEH21698.1|	*-*-	NLI interacting factor-like phosphatase [Medicago truncatula]	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding)
Niben101Scf02319g01005.1	AT2G25737.1	***-	Sulfite exporter TauE/SafE family protein LENGTH=476	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf14118g01006.1	sp|Q7ZUQ3|STK3_DANRE	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04995g11016.1	AT3G28740.1	***-	Cytochrome P450 superfamily protein LENGTH=509	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03278g07014.1	sp|O82530|PSA4_PETHY	*-**	Proteasome subunit alpha type-4	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf01094g01010.1	ref|XP_007043722.1|	***-	Vascular plant one zinc finger protein isoform 4 [Theobroma cacao] gb|EOX99553.1| Vascular plant one zinc finger protein isoform 4 [Theobroma cacao]		
Niben101Scf03624g04009.1	sp|Q9FME8|OPT4_ARATH	*-*-	Oligopeptide transporter 4	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf00265g03001.1	sp|P83947|PME1_FICPW	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf10259g00014.1			Unknown protein		
Niben101Scf00592g05010.1			Unknown protein		
Niben101Scf08680g01010.1	sp|Q9UK10|ZN225_HUMAN	--*-	Zinc finger protein 225	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf18196g00003.1	AT4G14700.1	*-*-	origin recognition complex 1 LENGTH=809	IPR001025 (Bromo adjacent homology (BAH) domain)	GO:0003682 (chromatin binding)
Niben101Scf00412g01015.1	sp|Q2TBY0|SKA2_BOVIN	-**-	Spindle and kinetochore-associated protein 2		
Niben101Scf05855g01022.1	sp|P10973|NLTPA_RICCO	****	Non-specific lipid-transfer protein A	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf07650g01019.1	AT2G39510.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=374	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf13227g00030.1	sp|Q9MA41|CTL1_ARATH	****	Chitinase-like protein 1	IPR000726 (Glycoside hydrolase, family 19, catalytic), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0006032 (chitin catabolic process), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf05787g02005.1	sp|Q6DR10|TBL43_ARATH	***-	Protein trichome birefringence-like 43	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf00110g05008.1	sp|C6E178|SECA_GEOSM	***-	Protein translocase subunit SecA	IPR000185 (Protein translocase subunit SecA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006605 (protein targeting), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0017038 (protein import)
Niben101Scf00984g10011.1	sp|Q6DDM4|API5A_XENLA	*-*-	Apoptosis inhibitor 5-A	IPR008383 (Apoptosis inhibitory 5)	
Niben101Scf12469g01007.1	sp|Q8W246|ZIP7_ARATH	****	Zinc transporter 7	IPR003689 (Zinc/iron permease)	GO:0005385 (zinc ion transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport), GO:0071577 (zinc ion transmembrane transport)
Niben101Scf04321g00002.1	ref|XP_007016885.1|	*-*-	Domain of Uncharacterized protein function isoform 5 [Theobroma cacao] gb|EOY34504.1| Domain of Uncharacterized protein function isoform 5 [Theobroma cacao]	IPR010369 (Protein of unknown function DUF966)	
Niben101Scf04502g00002.1	sp|Q9LEH3|PER15_IPOBA	****	Peroxidase 15	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00837g10002.1	sp|Q2QD89|PSAA_CUCSA	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf07925g00010.1	sp|Q9LK50|AB26G_ARATH	*-*-	ABC transporter G family member 26	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03412g03003.1	emb|CDW93816.1|	-**-	conserved hypothetical protein [Thiomonas sp. CB2]		
Niben101Scf15979g02003.1	sp|Q9QYL8|LYPA2_RAT	***-	Acyl-protein thioesterase 2	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf01422g01015.1	AT5G45560.1	*-**	Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein LENGTH=719	IPR002913 (START domain), IPR009769 (Domain of unknown function DUF1336), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf02297g06001.1	AT4G03600.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=162		
Niben101Scf00022g00014.1	sp|P30962|CCMC_BRADU	*-**	Heme exporter protein C	IPR002541 (Cytochrome c assembly protein), IPR003557 (Cytochrome c-type biogenesis protein CcmC)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf06545g04007.1	AT1G69640.1	***-	sphingoid base hydroxylase 1 LENGTH=260	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01785g05002.1	gb|KEH31356.1|	****	S-adenosyl-L-methionine-dependent methyltransferase [Medicago truncatula]	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf06163g00011.1	AT2G24530.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=407	IPR024738 (Transcriptional coactivator Hfi1/Transcriptional adapter 1)	GO:0070461 (SAGA-type complex)
Niben101Scf00584g00003.1			Unknown protein		
Niben101Scf03284g03012.1	sp|Q9ZPX1|ARF5_ARATH	*-*-	ADP-ribosylation factor-like protein 2	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00168g07002.1	sp|O80560|IP5PC_ARATH	****	Type I inositol 1,4,5-trisphosphate 5-phosphatase 12	IPR005135 (Endonuclease/exonuclease/phosphatase), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf07004g02004.1	ref|XP_003620005.1|	****	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00286g01019.1	gb|KEH41014.1|	*-*-	acylamino-acid-releasing enzyme, putative [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00837g05002.1	dbj|BAA97290.1|	*-*-	non-LTR retroelement reverse transcriptase-like [Arabidopsis thaliana]		
Niben101Ctg07269g00001.1	sp|Q6GPJ5|LRC40_XENLA	--*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf30865g00001.1	sp|C5CGH7|RS13_KOSOT	***-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH), IPR027437 (30s ribosomal protein S13, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02594g01001.1	sp|B7K331|RS19_CYAP8	***-	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05158g01037.1	gb|AAB23813.1|	--*-	NaPRP3 [Nicotiana alata]		
Niben101Scf00216g00005.1	AT2G37880.1	***-	Protein of unknown function, DUF617 LENGTH=247	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf02482g00007.1	emb|CDY02062.1|	*-*-	BnaC04g14390D [Brassica napus]		
Niben101Scf01655g04004.1	sp|O04609|WRK22_ARATH	****	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00395g02017.1	emb|CDY11192.1|	***-	BnaA03g00280D [Brassica napus]	IPR025640 (Domain of unknown function DUF4339)	
Niben101Scf04156g01015.1	sp|Q9FN51|TET12_ARATH	***-	Tetraspanin-12		
Niben101Scf01436g01004.1	AT1G28280.1	***-	VQ motif-containing protein LENGTH=247	IPR008889 (VQ)	
Niben101Scf00786g01008.1	gb|AES77964.2|	--*-	WRKY transcription factor-like protein [Medicago truncatula]		
Niben101Scf25794g00003.1	AT4G32920.1	***-	glycine-rich protein LENGTH=1432		
Niben101Scf00539g01013.1	sp|P92948|CDC5L_ARATH	*-*-	Cell division cycle 5-like protein	IPR021786 (Domain of unknown function DUF3351)	
Niben101Scf01731g00002.1			Unknown protein		
Niben101Scf04110g03003.1	sp|Q43735|PER27_ARATH	****	Peroxidase 27	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg07768g00003.1	sp|F4I1L3|ACC2_ARATH	*-**	Acetyl-CoA carboxylase 2	IPR013537 (Acetyl-CoA carboxylase, central domain)	GO:0003989 (acetyl-CoA carboxylase activity), GO:0005524 (ATP binding), GO:0006633 (fatty acid biosynthetic process)
Niben101Scf04796g00024.1	gb|ABF97674.1|	--*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Ctg03947g00003.1	sp|C1CXC1|ERA_DEIDV	--*-	GTPase Era	IPR009019 (K homology domain, prokaryotic type), IPR015946 (K homology domain-like, alpha/beta)	GO:0003723 (RNA binding)
Niben101Scf06344g04001.1	gb|AAG53944.1|	*-*-	quinone-oxidoreductase QR1 [Triphysaria versicolor]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf15885g00033.1	sp|P93311|RM02_ARATH	*-*-	60S ribosomal protein L2, mitochondrial		
Niben101Scf08651g00010.1	AT1G19180.1	***-	jasmonate-zim-domain protein 1 LENGTH=253	IPR010399 (Tify), IPR018467 (CO/COL/TOC1, conserved site)	
Niben101Scf12369g01013.1			Unknown protein		
Niben101Scf03805g01006.1	AT5G05580.1	*-*-	fatty acid desaturase 8 LENGTH=435		
Niben101Scf06318g02009.1			Unknown protein		
Niben101Scf02243g01032.1	sp|Q6P756|NECP2_RAT	***-	Adaptin ear-binding coat-associated protein 2	IPR011993 (Pleckstrin homology-like domain), IPR012466 (Adaptin ear-binding coat-associated protein 1 NECAP-1)	GO:0006897 (endocytosis), GO:0016020 (membrane)
Niben101Scf01390g01004.1	AT2G36770.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03937g02017.1	emb|CDX98387.1|	*-*-	BnaC06g17480D [Brassica napus]		
Niben101Scf00343g02002.1	AT5G07900.1	****	Mitochondrial transcription termination factor family protein LENGTH=405	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04623g01006.1	gb|KEH25572.1|	*-*-	HSP20-like chaperone superfamily protein [Medicago truncatula]	IPR008978 (HSP20-like chaperone)	
Niben101Scf00927g12001.1			Unknown protein		
Niben101Scf04133g02027.1	sp|Q1KXX0|RPOC2_HELAN	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf06502g00006.1	sp|Q9ZWJ9|ARR2_ARATH	*-*-	Two-component response regulator ARR2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06720g01006.1	sp|O95628|CNOT4_HUMAN	*-*-	CCR4-NOT transcription complex subunit 4	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02361g00003.1	ref|YP_005090400.1|	*-*-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf00536g02005.1	sp|Q9SIM9|MAX2_ARATH	***-	F-box protein MAX2	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf06578g00018.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf03016g00003.1	ref|XP_002528677.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF33716.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01291g02013.1	sp|Q9UUB6|UBLH2_SCHPO	****	Ubiquitin carboxyl-terminal hydrolase 2	IPR001578 (Peptidase C12, ubiquitin carboxyl-terminal hydrolase)	GO:0004843 (ubiquitin-specific protease activity), GO:0005622 (intracellular), GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf04494g00021.1	sp|Q66GQ3|PDI16_ARATH	***-	Protein disulfide isomerase-like 1-6	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf01627g03002.1			Unknown protein		
Niben101Scf04560g07009.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04133g02023.1	sp|Q8DLP3|ATPA_THEEB	*-**	ATP synthase subunit alpha	IPR004100 (ATPase, F1 complex alpha/beta subunit, N-terminal domain), IPR023366 (ATP synthase subunit alpha-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0015992 (proton transport), GO:0046034 (ATP metabolic process)
Niben101Scf01109g00004.1	sp|Q9LPI5|CID11_ARATH	****	Polyadenylate-binding protein-interacting protein 11	IPR009818 (Ataxin-2, C-terminal), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00736g00015.1	sp|Q32LS6|ABHDD_DANRE	***-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00538g03009.1	sp|Q652P9|GL93_ORYSJ	***-	Germin-like protein 9-3	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf04706g01009.1	sp|Q9QY80|HACD1_MOUSE	***-	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1	IPR007482 (Protein-tyrosine phosphatase-like, PTPLA)	
Niben101Scf00597g08024.1	AT5G44000.1	***-	Glutathione S-transferase family protein LENGTH=399	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR016639 (Glutathione S-transferase (GST))	GO:0005515 (protein binding)
Niben101Scf04396g01011.1	sp|Q0WP44|HASTY_ARATH	***-	Protein HASTY 1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf08549g02008.1	AT1G22400.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04899g04001.1	AT3G59700.1	*-**	lectin-receptor kinase LENGTH=661	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf03239g01008.1	dbj|BAF01103.1|	*-*-	transcription factor like protein [Arabidopsis thaliana]		
Niben101Scf01397g00021.1	AT5G40770.1	***-	prohibitin 3 LENGTH=277	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf01322g01005.1			Unknown protein		
Niben101Scf09502g00003.1	ref|XP_003609494.1|	*-*-	F-box protein [Medicago truncatula]	IPR006527 (F-box associated domain, type 1)	
Niben101Scf09436g03009.1			Unknown protein		
Niben101Scf05324g01002.1	AT1G67710.1	*-*-	response regulator 11 LENGTH=521	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily), IPR017053 (Response regulator, plant B-type)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00317g01004.1	emb|CDY65120.1|	***-	BnaA01g35330D [Brassica napus]	IPR008546 (Domain of unknown function DUF828), IPR013666 (Pleckstrin-like, plant)	
Niben101Ctg04093g00001.1	sp|B4FHY0|FEN1_MAIZE	*-*-	Flap endonuclease 1	IPR006086 (XPG-I domain), IPR020045 (5'-3' exonuclease, C-terminal domain)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0004518 (nuclease activity)
Niben101Scf00355g01013.1			Unknown protein		
Niben101Scf09455g01014.1	sp|Q498U4|SARNP_RAT	*-*-	SAP domain-containing ribonucleoprotein		
Niben101Scf08280g01019.1	sp|Q748D6|MURG_GEOSL	--**	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	IPR007235 (Glycosyl transferase, family 28, C-terminal)	GO:0005975 (carbohydrate metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups), GO:0030246 (carbohydrate binding), GO:0030259 (lipid glycosylation)
Niben101Scf08678g02013.1	sp|Q941D6|HDA14_ARATH	--*-	Histone deacetylase 14		
Niben101Scf09078g00001.1			Unknown protein		
Niben101Scf09089g01025.1	sp|Q9FG38|SNX1_ARATH	***-	Sorting nexin 1	IPR001683 (Phox homologous domain), IPR015404 (Vps5 C-terminal)	GO:0035091 (phosphatidylinositol binding)
Niben101Scf05734g00007.1	sp|Q9I8G9|RBBP7_CHICK	*-**	Histone-binding protein RBBP7	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf07926g01001.1	sp|E9QAU8|RN165_MOUSE	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01980g12010.1	sp|Q6ZKC0|14333_ORYSJ	***-	14-3-3-like protein GF14-C	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf02253g09003.1	sp|Q9STS6|LBD27_ARATH	*-*-	LOB domain-containing protein 27	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf02760g02006.1	gb|AAD24658.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]	IPR018289 (MULE transposase domain)	
Niben101Scf00290g00008.1	sp|P47758|SRPRB_MOUSE	*-*-	Signal recognition particle receptor subunit beta	IPR019009 (Signal recognition particle receptor, beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf28901g00010.1	sp|P43186|BEV1M_BETPN	***-	Major pollen allergen Bet v 1-M/N	IPR000916 (Bet v I domain), IPR023393 (START-like domain), IPR024949 (Bet v I type allergen)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf34538g00001.1	emb|CDX98153.1|	*-*-	BnaC07g09450D [Brassica napus]		
Niben101Scf01200g07006.1	sp|P10243|MYBA_HUMAN	*-*-	Myb-related protein A	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf10528g00001.1	sp|Q04VC7|DNAJ_LEPBJ	*-*-	Chaperone protein DnaJ	IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf01512g06001.1	sp|Q38897|BEL1_ARATH	*-*-	Homeobox protein BEL1 homolog	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg04754g00003.1	sp|Q15554|TERF2_HUMAN	--**	Telomeric repeat-binding factor 2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf00271g04026.1	gb|ABV21218.1|	*-*-	[Arabidopsis thaliana]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf03753g00007.1	AT4G25440.1	***-	zinc finger WD40 repeat protein 1 LENGTH=430	IPR000571 (Zinc finger, CCCH-type), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf05962g04011.1	gb|ABA94593.2|	*-*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf02774g01002.1	sp|P81394|MYB15_ANTMA	*-*-	Myb-related protein 315	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf09149g01007.1	sp|Q8LG89|BABL_ARATH	***-	Basic blue protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf16532g02005.1	emb|CDX75979.1|	*-*-	BnaC03g40620D [Brassica napus]	IPR008889 (VQ)	
Niben101Scf03197g06004.1	sp|O49313|NDADB_ARATH	***-	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B	IPR009346 (GRIM-19)	
Niben101Scf03738g01012.1	sp|P19243|HSP11_PEA	*-*-	18.1 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf05034g05004.1	sp|C7ZHK5|SEC11_NECH7	*-**	Signal peptidase complex catalytic subunit SEC11	IPR001733 (Peptidase S26B, eukaryotic signal peptidase)	GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016020 (membrane)
Niben101Scf01785g04008.1	sp|O23164|CRPM4_ARATH	***-	Cold-regulated 413 plasma membrane protein 4	IPR008892 (Cold acclimation WCOR413)	
Niben101Scf05468g04009.1	AT4G19420.1	***-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05960g01001.1	sp|Q8A0F4|NUOA_BACTN	--**	NADH-quinone oxidoreductase subunit A	IPR000440 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05103g01013.1	sp|Q6IP06|STK3_XENLA	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05480g00003.1	sp|Q94ID6|ERF81_ARATH	*-**	Ethylene-responsive transcription factor 12	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07123g01015.1	AT4G08850.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf02074g05005.1	sp|P05502|COX1_SORBI	****	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf14101g01004.1			Unknown protein		
Niben101Scf03854g03020.1			Unknown protein		
Niben101Scf01927g06007.1	emb|CDY06823.1|	***-	BnaC01g09220D [Brassica napus]	IPR010410 (Protein of unknown function DUF1005)	
Niben101Scf06228g02005.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00167g04018.1	sp|Q3C1H3|ATPF_NICSY	***-	ATP synthase subunit b, chloroplastic		
Niben101Scf00770g01004.1	sp|O82811|NRT21_ARATH	***-	High-affinity nitrate transporter 2.1	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf04657g05006.1	sp|Q7XHI9|BH084_ARATH	*-*-	Transcription factor bHLH84	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00797g17008.1	sp|P34164|SIP2_YEAST	*-*-	SNF1 protein kinase subunit beta-2	IPR006828 (Association with the SNF1 complex (ASC) domain), IPR014756 (Immunoglobulin E-set), IPR030067 (SNF1-related protein kinase regulatory subunit beta-1)	GO:0005515 (protein binding), GO:0009744 (response to sucrose), GO:0043562 (cellular response to nitrogen levels)
Niben101Scf03294g01006.1	AT5G16980.2	****	Zinc-binding dehydrogenase family protein LENGTH=305	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04436g11008.1	sp|Q69Q47|CIPKO_ORYSJ	*-**	CBL-interacting protein kinase 24	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02608g01016.1	gb|AGV54220.1|	-**-	synechocystis YCF37-like protein [Phaseolus vulgaris]		
Niben101Scf08126g00008.1	ref|YP_006666001.1|	*-*-	rib small subunit 4 (mitochondrion) [Raphanus sativus]	IPR022801 (Ribosomal protein S4/S9)	
Niben101Scf02085g15011.1	sp|O80450|TGT3B_ARATH	*-**	Trihelix transcription factor GT-3b	IPR001005 (SANT/Myb domain), IPR027775 (C2H2- zinc finger protein family)	GO:0003682 (chromatin binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf05697g03011.1	sp|Q9Z2D1|MTMR2_MOUSE	*-*-	Myotubularin-related protein 2	IPR029021 (Protein-tyrosine phosphatase-like)	GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf11364g00001.1	sp|Q3AF07|DNAJ_CARHZ	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf05901g01006.1	gb|KEH43099.1|	*-*-	SART-1 family protein [Medicago truncatula]		
Niben101Scf01789g02015.1	sp|Q3KM65|RNC_CHLTA	*-**	Ribonuclease 3	IPR000999 (Ribonuclease III domain), IPR014720 (Double-stranded RNA-binding domain)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0006396 (RNA processing)
Niben101Scf00096g00004.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf10205g00002.1			Unknown protein		
Niben101Scf18730g00015.1	sp|Q9SE83|DRP2A_ARATH	***-	Dynamin-2A	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR011993 (Pleckstrin homology-like domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf02074g04025.1	ref|YP_008080557.1|	*-*-	ORF82 (chloroplast) [Pharus latifolius] ref|YP_008994015.1| orf82 (chloroplast) [Pharus lappulaceus] ref|YP_008994037.1| orf82 (chloroplast) [Pharus lappulaceus] gb|AEI29144.1| ORF82 (chloroplast) [Pharus latifolius] gb|AGE65794.1| orf82 (chloroplast) [Pharus lappulaceus] gb|AGE65816.1| orf82 (chloroplast) [Pharus lappulaceus]		
Niben101Scf07070g00002.1	sp|B0C1F3|IF1_ACAM1	*-**	Translation initiation factor IF-1	IPR004368 (Translation initiation factor IF-1), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf05822g05008.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf14521g00001.1	sp|O49250|CYCLD_ANTMA	*-*-	Transcription factor CYCLOIDEA	IPR005333 (Transcription factor, TCP)	
Niben101Scf02725g03006.1	ref|XP_007022139.1|	-**-	Heat stress transcription factor B-4b, putative [Theobroma cacao] gb|EOY13664.1| Heat stress transcription factor B-4b, putative [Theobroma cacao]		
Niben101Scf05226g02006.1	ref|NP_001048874.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAF10788.1| Os03g0133300, partial [Oryza sativa Japonica Group]		
Niben101Scf04328g00045.1	sp|Q5IBL2|YCF3_PLALA	*-*-	Photosystem I assembly protein Ycf3		
Niben101Scf08133g00010.1	sp|Q01440|GTR1_LEIDO	--**	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02262g01013.1			Unknown protein		
Niben101Scf07339g00001.1	sp|Q9NW13|RBM28_HUMAN	--**	RNA-binding protein 28	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00339g19009.1	AT5G15240.1	***-	Transmembrane amino acid transporter family protein LENGTH=423	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf02420g01007.1	ref|NP_001054478.1|	--*-	product [Oryza sativa Japonica Group]	IPR027854 (Protein of unknown function DUF4535)	
Niben101Scf00623g00005.1	emb|CDY37194.1|	*-*-	BnaC02g35020D [Brassica napus]		
Niben101Scf01494g15010.1			Unknown protein		
Niben101Scf02575g00001.1	sp|P49459|UBE2A_HUMAN	--*-	Ubiquitin-conjugating enzyme E2 A	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR027230 (SUMO-conjugating enzyme Ubc9)	GO:0019789 (SUMO transferase activity)
Niben101Scf15393g00005.1	sp|Q9LIG2|RLK6_ARATH	*-*-	Receptor-like protein kinase	IPR024788 (Malectin-like carbohydrate-binding domain)	
Niben101Scf05310g05002.1	ref|XP_007034249.1|	***-	Non-imprinted in Prader-Willi/Angelman syndrome region protein [Theobroma cacao] gb|EOY05175.1| Non-imprinted in Prader-Willi/Angelman syndrome region protein [Theobroma cacao]	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf02864g11038.1	AT2G07785.1	*-*-	NADH dehydrogenase family protein LENGTH=99	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Ctg16217g00002.1	ref|XP_002511983.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF50652.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05749g00009.1	AT2G14820.1	***-	Phototropic-responsive NPH3 family protein LENGTH=634	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain), IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0009958 (positive gravitropism)
Niben101Scf08488g00005.1	sp|Q4L3G8|FTSH_STAHJ	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR011546 (Peptidase M41, FtsH extracellular), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding), GO:0016021 (integral component of membrane)
Niben101Ctg10970g00002.1	gb|AAU93590.2|	*-*-	Late blight resistance protein, putative [Solanum demissum]		
Niben101Scf08690g02017.1	AT5G24240.1	***-	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein LENGTH=574	IPR011009 (Protein kinase-like domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00369g19017.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf07121g05019.1	sp|Q9TVM2|XPO1_DROME	--*-	Exportin-1		
Niben101Scf02011g03011.1	sp|Q42059|GUN6_ARATH	***-	Endoglucanase 6	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like), IPR019028 (Carbohydrate binding domain CBM49)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf01697g02001.1	gb|AFW84079.1|	***-	secondary cell wall glycosyltransferase family 47 [Zea mays]	IPR004263 (Exostosin-like)	
Niben101Scf00220g04015.1	sp|O04006|PSAH_BRACM	****	Photosystem I reaction center subunit VI, chloroplastic	IPR004928 (Photosystem I PsaH, reaction centre subunit VI), IPR029027 (Single alpha-helix domain)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf02155g01016.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf02291g04022.1	sp|Q2N8Z5|ATPA_ERYLH	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf01731g07002.1	sp|O64896|TPPA_ARATH	****	Trehalose-phosphate phosphatase A	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf07591g01016.1	sp|Q9C744|AP3D_ARATH	*-*-	AP-3 complex subunit delta	IPR016024 (Armadillo-type fold), IPR017105 (Adaptor protein complex AP-3, delta subunit)	GO:0005488 (binding), GO:0005794 (Golgi apparatus), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf08635g01009.1	AT5G11630.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=93		
Niben101Scf12017g05023.1	sp|Q5JSL3|DOC11_HUMAN	--*-	Dedicator of cytokinesis protein 11		
Niben101Scf13141g00008.1	sp|O65743|RL24_CICAR	***-	60S ribosomal protein L24	IPR000988 (Ribosomal protein L24e-related)	
Niben101Scf06700g00001.1	ref|NP_001053015.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf08926g01016.1	sp|A1TYR4|HLDE_MARHV	*-*-	Bifunctional protein HldE	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process)
Niben101Scf01274g08011.1	sp|Q0WU02|MTP10_ARATH	***-	Metal tolerance protein 10	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain), IPR027470 (Cation efflux protein cytoplasmic domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01382g05005.1	emb|CDY50792.1|	***-	BnaCnng19560D [Brassica napus]	IPR007656 (Zein-binding domain)	
Niben101Scf13596g00001.1	AT2G39430.1	*-*-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=322		
Niben101Scf08943g00006.1	sp|Q9FF81|VPS36_ARATH	***-	Vacuolar protein sorting-associated protein 36	IPR007286 (EAP30), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR021648 (Vacuolar protein sorting protein 36, GLUE domain)	GO:0032266 (phosphatidylinositol-3-phosphate binding), GO:0043130 (ubiquitin binding)
Niben101Scf08278g00007.1	sp|Q9LW48|ERF5_NICSY	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04954g04005.1	AT2G38970.1	****	Zinc finger (C3HC4-type RING finger) family protein LENGTH=692	IPR002035 (von Willebrand factor, type A), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf20576g00005.1	AT5G65210.2	*-*-	bZIP transcription factor family protein LENGTH=368		
Niben101Scf11734g00009.1	AT5G17020.1	***-	exportin 1A LENGTH=1075	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf01938g00001.1	AT4G31200.2	****	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein LENGTH=650	IPR000061 (SWAP/Surp), IPR006569 (CID domain)	GO:0003723 (RNA binding), GO:0006396 (RNA processing)
Niben101Scf24096g00007.1			Unknown protein		
Niben101Scf02160g02013.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00713g03006.1	sp|P61219|RPAB2_MOUSE	****	DNA-directed RNA polymerases I, II, and III subunit RPABC2	IPR006110 (RNA polymerase, subunit omega/K/RPB6)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf08869g01016.1	sp|P69685|PSBD_ANTMA	*-**	Photosystem II D2 protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf12102g00004.1	sp|A9GP79|URED_SORC5	***-	Urease accessory protein UreD	IPR002669 (Urease accessory protein UreD)	GO:0006807 (nitrogen compound metabolic process), GO:0016151 (nickel cation binding)
Niben101Scf01285g04011.1	sp|P41098|RL34_TOBAC	***-	60S ribosomal protein L34	IPR008195 (Ribosomal protein L34Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02133g10009.1	sp|Q8VZK9|CSLE1_ARATH	****	Cellulose synthase-like protein E1	IPR005150 (Cellulose synthase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf04690g02040.1	sp|Q6H711|MAD29_ORYSJ	*-*-	MADS-box transcription factor 29	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01734g01053.1	sp|Q92733|PRCC_HUMAN	--*-	Proline-rich protein PRCC	IPR018800 (Proline-rich protein PRCC)	
Niben101Scf03208g05006.1			Unknown protein		
Niben101Scf19358g00014.1	gb|AAC72541.1|	***-	male sterility MS5 [Arabidopsis thaliana]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05197g01015.1	sp|O88813|ACSL5_RAT	***-	Long-chain-fatty-acid--CoA ligase 5	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04387g01031.1	sp|Q9SRR1|FBL12_ARATH	***-	F-box/LRR-repeat protein 12	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf13231g00006.1	sp|Q9LXV5|NFYA1_ARATH	****	Nuclear transcription factor Y subunit A-1	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02165g03011.1	gb|KEH35290.1|	*-*-	lysine ketoglutarate reductase trans-splicing protein [Medicago truncatula]		
Niben101Scf00339g09007.1	AT3G28850.1	***-	Glutaredoxin family protein LENGTH=428	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf10768g00003.1	AT5G57860.1	***-	Ubiquitin-like superfamily protein LENGTH=95	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf06283g00002.1	sp|P40690|ALKE_BABBO	***-	Aldo-keto reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf01037g02015.1	ref|WP_020168450.1|	***-	MULTISPECIES: cupin [Methylotenera]	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf10434g00014.1	sp|C0Z4E4|GATA_BREBN	*-*-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf04288g01010.1	AT4G30720.1	***-	FAD/NAD(P)-binding oxidoreductase family protein LENGTH=707	IPR002938 (Monooxygenase, FAD-binding)	
Niben101Scf05146g06012.1	sp|A1XQR9|RUXE_PIG	***-	Small nuclear ribonucleoprotein E	IPR010920 (Like-Sm (LSM) domain), IPR027078 (Small nuclear ribonucleoprotein E)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf02955g05019.1	sp|Q9XF43|KCS6_ARATH	***-	3-ketoacyl-CoA synthase 6	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Ctg15949g00001.1	sp|Q2KIP8|HACD2_BOVIN	***-	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2	IPR007482 (Protein-tyrosine phosphatase-like, PTPLA)	
Niben101Scf18731g00007.1			Unknown protein		
Niben101Scf03362g03003.1	AT2G47020.1	****	Peptide chain release factor 1 LENGTH=413	IPR004373 (Peptide chain release factor 1), IPR014720 (Double-stranded RNA-binding domain)	GO:0003747 (translation release factor activity), GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf01596g11007.1	sp|Q39817|CALX_SOYBN	***-	Calnexin homolog	IPR001580 (Calreticulin/calnexin), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005783 (endoplasmic reticulum), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf02336g00012.1	sp|P25793|CYSP2_HAECO	*-**	Cathepsin B-like cysteine proteinase 2	IPR000118 (Granulin), IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf03757g03002.1	AT5G18290.1	***-	Aquaporin-like superfamily protein LENGTH=243	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01694g02008.1	sp|P0CP79|PPIB_CRYNB	****	Peptidyl-prolyl cis-trans isomerase B	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf07321g00016.1	sp|Q9SWR3|MMT1_WEDBI	****	Methionine S-methyltransferase	IPR015424 (Pyridoxal phosphate-dependent transferase), IPR025779 (Methionine S-methyltransferase)	GO:0003824 (catalytic activity), GO:0008168 (methyltransferase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01694g09006.1	sp|Q9ST43|PH1_ARATH	--*-	Pleckstrin homology domain-containing protein 1		
Niben101Scf04189g00002.1	AT2G19930.1	****	RNA-dependent RNA polymerase family protein LENGTH=977	IPR007855 (RNA-dependent RNA polymerase, eukaryotic-type)	GO:0003968 (RNA-directed RNA polymerase activity)
Niben101Scf01289g08001.1			Unknown protein		
Niben101Scf04113g07009.1	sp|E1U332|ALL12_OLEEU	***-	Isoflavone reductase-like protein	IPR016040 (NAD(P)-binding domain)	
Niben101Scf01834g01009.1			Unknown protein		
Niben101Scf01393g01003.1	AT2G27490.1	****	dephospho-CoA kinase family LENGTH=232	IPR001977 (Dephospho-CoA kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004140 (dephospho-CoA kinase activity), GO:0005524 (ATP binding), GO:0015937 (coenzyme A biosynthetic process)
Niben101Scf04198g07011.1	ref|WP_031065677.1|	*-*-	phosphoesterase [Streptomyces sp. NRRL F-5527]	IPR016195 (Polymerase/histidinol phosphatase-like)	GO:0003824 (catalytic activity)
Niben101Scf17802g01003.1	sp|B9SBU9|TPS5_RICCO	****	Terpene synthase 5	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf00630g00004.1	emb|CDY01294.1|	***-	BnaA07g10670D [Brassica napus]	IPR007650 (Zf-FLZ domain)	
Niben101Scf00337g07011.1	ref|XP_003595756.1|	***-	Cleavage stimulation factor subunit 1-like protein [Medicago truncatula]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf09512g01014.1	dbj|BAF01103.1|	*-*-	transcription factor like protein [Arabidopsis thaliana]		
Niben101Scf02849g07001.1	sp|Q11SV1|GPMA_CYTH3	***-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	IPR001345 (Phosphoglycerate/bisphosphoglycerate mutase, active site), IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf09590g01001.1	sp|P34123|PRS6B_DICDI	*-*-	26S protease regulatory subunit 6B homolog	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf08667g03002.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06295g01005.1	AT5G57840.1	****	HXXXD-type acyl-transferase family protein LENGTH=443	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02638g02014.1	sp|Q6DN52|CBPL_DICDI	--**	Calcium-binding protein L	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02285g01019.1			Unknown protein		
Niben101Scf01926g06008.1	sp|Q9LNI5|ETC1_ARATH	*-*-	MYB-like transcription factor ETC1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07935g02005.1	sp|Q94JM3|ARFB_ARATH	*-*-	Auxin response factor 2		
Niben101Scf00622g00006.1	sp|A7ZTF9|LLDD_ECO24	***-	L-lactate dehydrogenase	IPR012133 (Alpha-hydroxy acid dehydrogenase, FMN-dependent), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08597g01005.1	sp|P55857|SUMO1_ORYSJ	-**-	Small ubiquitin-related modifier 1		
Niben101Scf03923g10005.1	sp|Q6DH44|WDR83_DANRE	--*-	WD repeat domain-containing protein 83	IPR000409 (BEACH domain), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR023362 (PH-BEACH domain)	GO:0005515 (protein binding)
Niben101Scf03439g02011.1			Unknown protein		
Niben101Scf05800g02016.1	sp|Q12873|CHD3_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 3	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR009057 (Homeodomain-like), IPR009462 (Domain of unknown function DUF1086), IPR009463 (Domain of unknown function DUF1087), IPR012957 (CHD, C-terminal 2), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016197 (Chromo domain-like), IPR024934 (Rubredoxin-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005506 (iron ion binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf04037g01013.1	sp|Q9LVQ5|PP432_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04941g00006.1	gb|KEH42787.1|	***-	ion channel pollux-like protein [Medicago truncatula]	IPR010420 (CASTOR/POLLUX/SYM8 ion channels)	
Niben101Scf09403g00025.1	sp|P49637|R27A3_ARATH	--*-	60S ribosomal protein L27a-3		
Niben101Scf02172g01005.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf01977g02002.1	sp|Q9LR69|PPR8_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05952g01007.1	emb|CDY62977.1|	***-	BnaCnng41180D [Brassica napus]		
Niben101Scf10920g01029.1	sp|Q9H9V9|JMJD4_HUMAN	*-*-	JmjC domain-containing protein 4	IPR001810 (F-box domain), IPR003347 (JmjC domain)	GO:0005515 (protein binding)
Niben101Scf02917g00018.1	sp|Q9SR72|GL32_ARATH	*-*-	Germin-like protein subfamily 3 member 2	IPR009719 (Protein of unknown function DUF1296, plant), IPR014710 (RmlC-like jelly roll fold)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf00693g01012.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf11723g00018.1	AT4G02900.1	*-*-	ERD (early-responsive to dehydration stress) family protein LENGTH=785	IPR003864 (Domain of unknown function DUF221)	GO:0016020 (membrane)
Niben101Scf01856g02001.1	emb|CDY53602.1|	*-*-	BnaC09g51900D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283), IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf00149g01014.1	sp|A2SIR5|DNAJ_METPP	***-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf07006g00006.1	AT3G06730.1	***-	Thioredoxin z LENGTH=183	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00231g06004.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf16738g00001.1			Unknown protein		
Niben101Scf17891g03008.1	gb|AES62418.2|	***-	membrane-associated kinase regulator-like protein, putative [Medicago truncatula]		
Niben101Scf03204g01010.1	gb|AAS91798.1|	*-*-	Ulp1-like peptidase [Cucumis melo] gb|AAU04774.1| Ulp1 peptidase-like [Cucumis melo]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf02509g07006.1	sp|Q5ZA07|C3H41_ORYSJ	***-	E3 ubiquitin-protein ligase makorin	IPR000571 (Zinc finger, CCCH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf00611g05009.1	emb|CDY55865.1|	***-	BnaCnng29470D [Brassica napus]		
Niben101Scf18347g00003.1	sp|P20664|PRI1_MOUSE	****	DNA primase small subunit	IPR002755 (DNA primase, small subunit)	GO:0003896 (DNA primase activity), GO:0006269 (DNA replication, synthesis of RNA primer)
Niben101Scf13741g01014.1	AT1G56050.1	****	GTP-binding protein-related LENGTH=421	IPR004396 (Ribosome-binding ATPase YchF/Obg-like ATPase 1), IPR012675 (Beta-grasp domain), IPR023192 (TGS-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf04323g03001.1	emb|CDX94052.1|	***-	BnaC07g36860D [Brassica napus]		
Niben101Scf05697g11003.1	sp|Q9SWB6|PM36_SOYBN	***-	Seed maturation protein PM36	IPR016084 (Haem oxygenase-like, multi-helical)	
Niben101Scf08643g00008.1	ref|WP_026104354.1|	*-*-	aldo/keto reductase [Anabaena sp. PCC 7108]	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf01653g02017.1	sp|Q9DBS5|KLC4_MOUSE	--*-	Kinesin light chain 4	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04030g01005.1	sp|Q9FYQ8|TMN11_ARATH	***-	Transmembrane 9 superfamily member 11	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf03061g00012.1	AT3G17840.1	*-**	receptor-like kinase 902 LENGTH=647	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05656g01005.1	ref|XP_002527462.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF34954.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03857g01010.1	emb|CDX84542.1|	***-	BnaC03g49580D [Brassica napus]		
Niben101Scf05631g00006.1			Unknown protein		
Niben101Scf08855g00006.1	sp|Q9SUQ8|DIR6_ARATH	--*-	Dirigent protein 6	IPR004265 (Plant disease resistance response protein)	
Niben101Scf04951g03026.1	AT4G19120.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=600	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf06869g02014.1	sp|Q9X6X4|LIPB_MYXXA	****	Octanoyltransferase	IPR000544 (Octanoyltransferase)	GO:0005737 (cytoplasm), GO:0006464 (cellular protein modification process), GO:0009107 (lipoate biosynthetic process), GO:0016415 (octanoyltransferase activity)
Niben101Scf04555g01001.1	gb|AGC39165.1|	***-	kiwellin [Actinidia deliciosa]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf02373g04024.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00298g02008.1	sp|Q5E9Z8|LSM1_BOVIN	*-*-	U6 snRNA-associated Sm-like protein LSm1	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf01912g01006.1	ref|XP_002524652.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37671.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11124g00003.1	AT3G24740.1	***-	Protein of unknown function (DUF1644) LENGTH=354	IPR012866 (Protein of unknown function DUF1644), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf05535g00010.1	sp|Q0WU02|MTP10_ARATH	***-	Metal tolerance protein 10	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain), IPR027470 (Cation efflux protein cytoplasmic domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf20035g00004.1	sp|Q3UJZ3|ARMC7_MOUSE	***-	Armadillo repeat-containing protein 7	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02775g00001.1	sp|O80337|EF100_ARATH	****	Ethylene-responsive transcription factor 1A	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03870g01008.1	AT5G14790.1	***-	ARM repeat superfamily protein LENGTH=346	IPR016024 (Armadillo-type fold), IPR024395 (CLASP N-terminal domain)	GO:0005488 (binding)
Niben101Scf07346g01005.1	sp|D8QNI1|CSPLH_SELML	***-	CASP-like protein 5A1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf00956g00003.1	sp|Q09466|WHT3_CAEEL	*-**	ABC transporter ATP-binding protein/permease wht-3	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf04375g13006.1	sp|Q9FFN7|DGK2_ARATH	****	Diacylglycerol kinase 2	IPR000756 (Diacylglycerol kinase, accessory domain), IPR001206 (Diacylglycerol kinase, catalytic domain), IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol-binding domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process), GO:0035556 (intracellular signal transduction)
Niben101Scf00585g04009.1	sp|Q39070|CCB22_ARATH	--*-	Cyclin-B2-2		
Niben101Scf04987g00022.1	gb|AAP54387.2|	*-*-	hAT family dimerisation domain containing protein [Oryza sativa Japonica Group]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf12414g04024.1	sp|Q8VYS5|TBL18_ARATH	***-	Protein trichome birefringence-like 18	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf14708g00022.1	sp|Q5KQN0|CAX2_ORYSJ	*-*-	Vacuolar cation/proton exchanger 2		
Niben101Scf00279g01014.1	sp|Q9FLG1|BXL4_ARATH	***-	Beta-D-xylosidase 4	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026891 (Fibronectin type III-like domain), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06117g02010.1	AT4G03420.1	***-	Protein of unknown function (DUF789) LENGTH=310	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf00223g01002.1	emb|CDY57158.1|	*-*-	BnaC05g50400D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf02730g01029.1	AT5G14790.1	***-	ARM repeat superfamily protein LENGTH=346	IPR016024 (Armadillo-type fold), IPR024395 (CLASP N-terminal domain)	GO:0005488 (binding)
Niben101Scf04906g00025.1	sp|P42327|ADH2_GEOSE	***-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09701g01010.1	AT2G22120.2	*-*-	RING/FYVE/PHD zinc finger superfamily protein LENGTH=363		
Niben101Scf05997g00011.1	sp|Q9CR95|NECP1_MOUSE	***-	Adaptin ear-binding coat-associated protein 1	IPR011993 (Pleckstrin homology-like domain), IPR012466 (Adaptin ear-binding coat-associated protein 1 NECAP-1)	
Niben101Scf19214g00010.1	sp|P43102|UBC4_CANAX	***-	Ubiquitin-conjugating enzyme E2 4	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf07005g00023.1	ref|XP_007035917.1|	*-*-	Calcium-dependent lipid-binding family protein isoform 4 [Theobroma cacao] gb|EOY06843.1| Calcium-dependent lipid-binding family protein isoform 4 [Theobroma cacao]	IPR001849 (Pleckstrin homology domain)	
Niben101Scf00984g01001.1	sp|O43001|SYJ1_SCHPO	*-**	Inositol-1,4,5-trisphosphate 5-phosphatase 1	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf00419g00025.1			Unknown protein		
Niben101Scf22103g00001.1	ref|XP_002523926.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38495.1| conserved hypothetical protein [Ricinus communis]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf00416g06001.1	AT5G57200.1	*-*-	ENTH/ANTH/VHS superfamily protein LENGTH=591	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf05304g05005.1	AT1G44760.1	***-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=213	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf01964g08022.1	sp|F4I562|AP3M_ARATH	****	AP-3 complex subunit mu	IPR001392 (Clathrin adaptor, mu subunit), IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf06661g04006.1			Unknown protein		
Niben101Scf00991g05009.1	sp|P51414|RL261_ARATH	****	60S ribosomal protein L26-1	IPR005756 (Ribosomal protein L26/L24P, eukaryotic/archaeal), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf00779g02004.1	sp|Q9D7X3|DUS3_MOUSE	*-**	Dual specificity protein phosphatase 3	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf01166g11007.1			Unknown protein		
Niben101Scf08804g02001.1	AT5G42390.1	***-	Insulinase (Peptidase family M16) family protein LENGTH=1265	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0046872 (metal ion binding)
Niben101Scf00582g01029.1	sp|Q72MG4|IPYR_LEPIC	****	Inorganic pyrophosphatase	IPR008162 (Inorganic pyrophosphatase)	GO:0000287 (magnesium ion binding), GO:0004427 (inorganic diphosphatase activity), GO:0005737 (cytoplasm), GO:0006796 (phosphate-containing compound metabolic process)
Niben101Scf01274g01002.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf01720g00015.1	sp|Q43735|PER27_ARATH	****	Peroxidase 27	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10085g01002.1	sp|Q802W2|A9A1B_DANRE	****	Aldehyde dehydrogenase family 9 member A1-B	IPR010061 (Methylmalonate-semialdehyde dehydrogenase), IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0004491 (methylmalonate-semialdehyde dehydrogenase (acylating) activity), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf02307g02018.1	sp|B9SLR1|Y231_RICCO	***-	UPF0392 protein RCOM_0530710	IPR008166 (Domain of unknown function DUF23), IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf02072g02027.1	sp|Q9KV59|ACSA_VIBCH	--*-	Acetyl-coenzyme A synthetase	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf05938g01046.1	sp|P82381|ICI_LINUS	-**-	Proteinase inhibitor	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	
Niben101Scf02793g18008.1	sp|P26197|ACT2_ABSGL	*-*-	Actin-2	IPR004000 (Actin family)	
Niben101Scf05830g03009.1			Unknown protein		
Niben101Scf11215g00028.1	AT3G14690.1	*-*-	cytochrome P450, family 72, subfamily A, polypeptide 15 LENGTH=512		
Niben101Scf01350g05011.1			Unknown protein		
Niben101Scf09590g03004.1	gb|ADV29615.1|	***-	At5g37260-like protein [Solanum arcanum]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08020g00001.1	AT2G36050.1	*-*-	ovate family protein 15 LENGTH=261	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf06394g08007.1	emb|CDY01772.1|	***-	BnaC06g28120D [Brassica napus]		
Niben101Scf00493g00012.1	sp|Q4VYC8|NSP1_MEDTR	***-	Nodulation-signaling pathway 1 protein	IPR005202 (Transcription factor GRAS), IPR030015 (Scarecrow-like protein 29/nodulation signalling pathway 1)	
Niben101Scf15394g00018.1	ref|XP_003592631.1|	*-*-	Replication factor A protein [Medicago truncatula]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf00856g00005.1	ref|NP_194330.1|	*-**	RNA-binding KH domain-containing protein PEPPER [Arabidopsis thaliana] emb|CAB39665.1| putative nucleic acid binding protein [Arabidopsis thaliana] emb|CAB79455.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAL07137.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAM20510.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAM45112.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AEE85142.1| RNA-binding KH domain-containing protein PEPPER [Arabidopsis thaliana]	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf00062g00005.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01371g03001.1	sp|P82381|ICI_LINUS	-***	Proteinase inhibitor	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding)
Niben101Scf06088g00019.1	sp|Q5U508|TBCE_XENLA	***-	Tubulin-specific chaperone E	IPR001611 (Leucine-rich repeat), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf02405g02019.1	gb|AEO97238.1|	--*-	endo-1,4-beta-glucanase [Populus tomentosa]	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09703g03004.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf38945g00001.1	AT1G35490.1	****	bZIP family transcription factor LENGTH=300	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf11552g04017.1	sp|Q9UDY4|DNJB4_HUMAN	--*-	DnaJ homolog subfamily B member 4		
Niben101Scf06727g00024.1	sp|Q9SS44|TF2B2_ARATH	****	Transcription initiation factor IIB-2	IPR000812 (Transcription factor TFIIB), IPR023486 (Transcription factor TFIIB, conserved site)	GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0017025 (TBP-class protein binding)
Niben101Scf06186g07001.1	sp|Q8LF97|ASK21_ARATH	***-	SKP1-like protein 21	IPR001232 (S-phase kinase-associated protein 1-like), IPR011333 (BTB/POZ fold), IPR016072 (SKP1 component, dimerisation)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf08277g00007.1	sp|Q8GXW6|FBL59_ARATH	*-*-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02459g05005.1	gb|KEH35072.1|	*-*-	alpha-N-acetylglucosaminidase family protein [Medicago truncatula]	IPR024732 (Alpha-N-acetylglucosaminidase, C-terminal)	
Niben101Scf00978g11001.1	gb|ABD33275.2|	***-	progesterone 5-beta-reductase, putative [Medicago truncatula]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf02044g01004.1			Unknown protein		
Niben101Scf04077g05007.1	sp|Q9NSD9|SYFB_HUMAN	*-**	Phenylalanine--tRNA ligase beta subunit	IPR005146 (B3/B4 tRNA-binding domain), IPR009061 (DNA binding domain, putative)	GO:0003723 (RNA binding), GO:0004826 (phenylalanine-tRNA ligase activity)
Niben101Scf02764g05011.1	ref|XP_007008944.1|	*-*-	Transducin family protein / WD-40 repeat family protein, putative isoform 4 [Theobroma cacao] gb|EOY17754.1| Transducin family protein / WD-40 repeat family protein, putative isoform 4 [Theobroma cacao]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05437g01007.1	emb|CCA25553.1|	*-*-	phosphatidylinositol kinase putative [Albugo laibachii Nc14]	IPR000270 (Phox/Bem1p), IPR000433 (Zinc finger, ZZ-type), IPR009060 (UBA-like), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02093g03001.1	sp|Q67ZB3|FRL3_ARATH	***-	FRIGIDA-like protein 3	IPR012474 (Frigida-like)	
Niben101Ctg14691g00005.1	sp|Q8S8P6|PP180_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00415g06006.1			Unknown protein		
Niben101Scf00794g00001.1			Unknown protein		
Niben101Scf11182g01006.1	sp|B9IUM7|MIAA_BACCQ	****	tRNA dimethylallyltransferase	IPR002627 (tRNA isopentenyltransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf01521g01017.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07767g02010.1			Unknown protein		
Niben101Scf01175g03006.1	AT1G53130.1	***-	Stigma-specific Stig1 family protein LENGTH=168	IPR006969 (Stigma-specific protein Stig1)	
Niben101Scf02838g06004.1	sp|Q9XI36|MBD10_ARATH	*-**	Methyl-CpG-binding domain-containing protein 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf02236g07003.1	emb|CDY50465.1|	***-	BnaA10g28920D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant), IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf00261g02003.1			Unknown protein		
Niben101Scf09172g02043.1	sp|Q504L7|ZN574_RAT	--*-	Zinc finger protein 574	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00495g01022.1	ref|XP_002534699.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF27685.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01027g00003.1	sp|Q1CZI7|HTPG_MYXXD	*-*-	Chaperone protein HtpG	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf14233g00013.1	sp|O75131|CPNE3_HUMAN	***-	Copine-3	IPR000008 (C2 domain), IPR002035 (von Willebrand factor, type A), IPR010734 (Copine)	GO:0005515 (protein binding)
Niben101Scf01687g04011.1	sp|A7A179|ATG26_YEAS7	*-*-	Sterol 3-beta-glucosyltransferase	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00174g00043.1			Unknown protein		
Niben101Scf02452g06018.1	sp|Q6H711|MAD29_ORYSJ	****	MADS-box transcription factor 29	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf01787g00034.1	sp|A9II07|NUOD_BORPD	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01917g11025.1	tpg|DAA40515.1|	***-	TPA: hypothetical protein ZEAMMB73_843378 [Zea mays]	IPR004182 (GRAM domain)	
Niben101Scf03842g01012.1	sp|Q1PEY6|EPFL6_ARATH	*-*-	EPIDERMAL PATTERNING FACTOR-like protein 6		
Niben101Scf00247g05011.1	sp|Q570C0|TIR1_ARATH	***-	Protein TRANSPORT INHIBITOR RESPONSE 1	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf05252g00002.1	sp|Q87FQ5|MALT_VIBPA	--*-	HTH-type transcriptional regulator MalT		
Niben101Scf00482g10004.1	sp|Q9LQR0|LBD1_ARATH	***-	LOB domain-containing protein 1	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf09512g01015.1	ref|WP_030607312.1|	***-	alpha/beta hydrolase [Streptomyces achromogenes]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03000g00022.1	sp|Q9C5U2|AHK2_ARATH	*-*-	Histidine kinase 2	IPR006189 (CHASE)	
Niben101Scf01205g02005.1	sp|Q40585|VATL_TOBAC	****	V-type proton ATPase 16 kDa proteolipid subunit	IPR000245 (V-ATPase proteolipid subunit), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf01500g00003.1	ref|XP_003589324.1|	****	DDB1- and CUL4-associated factor [Medicago truncatula] gb|AES59575.1| nucleotide-binding protein [Medicago truncatula]	IPR007287 (Sof1-like protein), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf19911g00001.1	AT1G73805.1	***-	Calmodulin binding protein-like LENGTH=451	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf09740g00003.1	AT5G52390.1	***-	PAR1 protein LENGTH=195	IPR009489 (PAR1)	
Niben101Scf06518g02005.1	sp|Q9FHA6|RLF34_ARATH	***-	Protein RALF-like 34	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf00941g00013.1	sp|Q94AI6|SEC6_ARATH	****	Exocyst complex component SEC6	IPR010326 (Exocyst complex component Sec6)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf10889g01016.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00314g02021.1	sp|Q8T135|KIF5_DICDI	*-**	Kinesin-related protein 5	IPR001752 (Kinesin motor domain), IPR010544 (Kinesin-related conserved domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf07370g02006.1	sp|Q5RFJ0|COA5_PONAB	***-	Cytochrome c oxidase assembly factor 5	IPR018793 (Cytochrome c oxidase assembly protein PET191)	
Niben101Scf04063g00012.1	sp|Q5R7K0|HSDL1_PONAB	--*-	Inactive hydroxysteroid dehydrogenase-like protein 1		
Niben101Scf01998g06011.1	sp|B8B4K9|NAF1D_ORYSI	*-**	Nucleosome assembly protein 1-like 4	IPR002164 (Nucleosome assembly protein (NAP))	GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf02849g09004.1	ref|XP_002522368.1|	-***	DNA binding protein, putative [Ricinus communis] gb|EEF40052.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf07391g01014.1	sp|Q8CHJ0|PIGU_CRIGR	*-**	Phosphatidylinositol glycan anchor biosynthesis class U protein	IPR009600 (GPI transamidase subunit PIG-U)	GO:0006506 (GPI anchor biosynthetic process), GO:0016021 (integral component of membrane)
Niben101Scf00428g02011.1	sp|Q9FML2|HDA6_ARATH	*-**	Histone deacetylase 6	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	GO:0004407 (histone deacetylase activity), GO:0016575 (histone deacetylation)
Niben101Scf04674g04011.1	ref|XP_002531022.1|	--*-	Transitional endoplasmic reticulum ATPase, putative [Ricinus communis] gb|EEF31360.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis]		
Niben101Scf37031g00002.1	sp|Q94K00|TBL28_ARATH	***-	Protein trichome birefringence-like 28	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	GO:0050826 (response to freezing)
Niben101Scf13196g00010.1	sp|P57699|ATKB_HALSA	****	Potassium-transporting ATPase B chain	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0005507 (copper ion binding), GO:0006812 (cation transport), GO:0016021 (integral component of membrane), GO:0019829 (cation-transporting ATPase activity), GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf09745g00016.1	sp|Q9FE67|ERF80_ARATH	--*-	Ethylene-responsive transcription factor 9		
Niben101Scf03473g01015.1	sp|Q5IH81|EIF3I_RABIT	****	Eukaryotic translation initiation factor 3 subunit I	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR027525 (Eukaryotic translation initiation factor 3 subunit I)	GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf01655g04003.1	AT1G01490.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=177	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf00072g04001.1	sp|Q9LSL9|PP445_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf15381g00015.1			Unknown protein		
Niben101Scf02821g08011.1	sp|Q9HUG8|MSBA_PSEAE	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf09523g04006.1	sp|C1DCB6|NUON_LARHH	--*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf01380g02001.1	AT2G26310.1	***-	Chalcone-flavanone isomerase family protein LENGTH=398	IPR016087 (Chalcone isomerase)	GO:0016872 (intramolecular lyase activity)
Niben101Scf03403g01025.1	sp|P37116|NCPR_VIGRR	****	NADPH--cytochrome P450 reductase	IPR001094 (Flavodoxin), IPR023173 (NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3), IPR029039 (Flavoprotein-like)	GO:0005506 (iron ion binding), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08643g03026.1	sp|P52917|VPS4_YEAST	*-*-	Vacuolar protein sorting-associated protein 4	IPR007330 (MIT), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf06625g02012.1	AT5G24380.1	***-	YELLOW STRIPE like 2 LENGTH=664	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf00138g05016.1	sp|Q94CD8|E134_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 4	IPR012946 (X8 domain)	
Niben101Scf00165g03007.1	sp|Q9LT79|PUB25_ARATH	***-	U-box domain-containing protein 25	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf00683g03030.1	sp|Q7G188|FIMB1_ARATH	***-	Fimbrin-1	IPR001715 (Calponin homology domain), IPR011992 (EF-hand domain pair)	GO:0005515 (protein binding)
Niben101Scf10386g00011.1	sp|P13798|ACPH_HUMAN	--*-	Acylamino-acid-releasing enzyme	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02207g05010.1	sp|Q2RIT6|TRPD_MOOTA	****	Anthranilate phosphoribosyltransferase	IPR005940 (Anthranilate phosphoribosyl transferase)	GO:0000162 (tryptophan biosynthetic process), GO:0004048 (anthranilate phosphoribosyltransferase activity), GO:0008152 (metabolic process), GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf02508g01008.1	ref|XP_007034556.1|	***-	UPF0329 protein ECU01_0100/ECU01_1510/ECU08_0030, putative isoform 1 [Theobroma cacao] gb|EOY05482.1| UPF0329 protein ECU01_0100/ECU01_1510/ECU08_0030, putative isoform 1 [Theobroma cacao]		
Niben101Scf01767g02003.1	AT1G04985.1	***-	unknown protein; Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=193		
Niben101Scf02165g03012.1	gb|AEK83458.1|	*-*-	At5g60700-like protein [Capsella grandiflora]	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf08519g01020.1	sp|Q9M9Q9|PER5_ARATH	****	Peroxidase 5	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05109g03009.1	sp|Q6ZSG1|RN165_HUMAN	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00741g00001.1	AT1G63110.1	****	GPI transamidase subunit PIG-U LENGTH=469	IPR009600 (GPI transamidase subunit PIG-U)	GO:0006506 (GPI anchor biosynthetic process), GO:0016021 (integral component of membrane)
Niben101Scf00691g04014.1	sp|Q5JLD8|CIPK8_ORYSJ	****	CBL-interacting protein kinase 8	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00408g11008.1	AT5G25060.1	*-*-	RNA recognition motif (RRM)-containing protein LENGTH=946	IPR013170 (mRNA splicing factor, Cwf21)	
Niben101Scf01337g03002.1	sp|Q8H1D2|WOX5_ARATH	***-	WUSCHEL-related homeobox 5	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf08179g01020.1			Unknown protein		
Niben101Scf04457g04017.1	emb|CDY19013.1|	***-	BnaC01g20550D [Brassica napus]	IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf01267g13008.1	AT1G67640.1	***-	Transmembrane amino acid transporter family protein LENGTH=441	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf01607g01001.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03971g02002.1	sp|Q9ZQ89|UPS2_ARATH	***-	Ureide permease 2	IPR009834 (Ureide permease)	GO:0071705 (nitrogen compound transport)
Niben101Scf06518g01011.1	AT5G42930.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=467	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf02366g06001.1	sp|Q8X4B4|NQOR_ECO57	***-	NAD(P)H dehydrogenase (quinone)	IPR029039 (Flavoprotein-like)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity)
Niben101Scf00219g02012.1	ref|NP_179175.3|	***-	P-loop containing nucle [Arabidopsis thaliana]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf06851g01007.1	sp|P07506|COX1_SOYBN	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01035g01013.1	AT5G13610.1	*-*-	Protein of unknown function (DUF155) LENGTH=402	IPR003734 (Protein of unknown function DUF155)	
Niben101Scf01002g13018.1	sp|Q6NMJ2|OLE96_ARATH	--*-	Pollen-specific protein-like		
Niben101Scf06981g00012.1	sp|Q8GWA9|PP157_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002625 (Smr protein/MutS2 C-terminal), IPR002885 (Pentatricopeptide repeat)	
Niben101Scf12102g00003.1	sp|P40973|PLY_LILLO	--**	Pectate lyase	IPR007524 (Pectate lyase, N-terminal)	GO:0030570 (pectate lyase activity)
Niben101Scf04778g02019.1	sp|Q94G86|ALL9_OLEEU	***-	Glucan endo-1,3-beta-D-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00338g09007.1	ref|XP_007037138.1|	***-	Ankyrin repeat domain-containing protein 50 isoform 3 [Theobroma cacao] gb|EOY21639.1| Ankyrin repeat domain-containing protein 50 isoform 3 [Theobroma cacao]		
Niben101Scf04954g04004.1	sp|Q75FA7|COX16_ASHGO	-***	Cytochrome c oxidase assembly protein COX16, mitochondrial	IPR020164 (Cytochrome c oxidase assembly protein COX16)	GO:0031966 (mitochondrial membrane)
Niben101Scf02486g03011.1	sp|P94014|GL21_ARATH	*-*-	Germin-like protein subfamily 2 member 1	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf02268g00010.1	AT4G39870.1	***-	TLD-domain containing nucleolar protein LENGTH=394	IPR006571 (TLDc domain)	
Niben101Scf03064g03017.1	sp|P40690|ALKE_BABBO	***-	Aldo-keto reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf08193g00014.1	AT5G45360.1	*-*-	F-box family protein LENGTH=316	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf08357g04020.1	AT5G39530.1	***-	Protein of unknown function (DUF1997) LENGTH=239	IPR018971 (Protein of unknown function DUF1997)	
Niben101Ctg16329g00003.1	sp|Q949S9|SPF27_ARATH	*-**	Pre-mRNA-splicing factor SPF27 homolog	IPR008409 (Pre-mRNA-splicing factor SPF27)	GO:0006397 (mRNA processing)
Niben101Scf07639g04005.1	AT1G02180.1	***-	ferredoxin-related LENGTH=226		
Niben101Scf07034g06001.1	AT3G54350.1	*-*-	Forkhead-associated (FHA) domain-containing protein LENGTH=702	IPR025999 (Microspherule protein, N-terminal domain)	
Niben101Scf05269g03009.1	sp|Q9LME2|SYCP1_ARATH	***-	Synaptonemal complex protein 1		
Niben101Scf06966g00014.1	sp|Q6HEP6|RSMH_BACHK	****	Ribosomal RNA small subunit methyltransferase H	IPR002903 (Ribosomal RNA small subunit methyltransferase H), IPR023397 (S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Ctg12711g00003.1	sp|A7QEU4|PER5_VITVI	****	Peroxidase 5	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf17487g00005.1	AT3G18590.1	***-	early nodulin-like protein 5 LENGTH=188	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf01765g02003.1	AT5G37590.1	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=551		
Niben101Scf04551g04012.1	ref|XP_002521520.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF40791.1| conserved hypothetical protein [Ricinus communis]	IPR019193 (Ubiquitin-conjugating enzyme E2-binding protein)	
Niben101Scf00397g01001.1			Unknown protein		
Niben101Scf06650g03009.1	ref|NP_180763.1|	****	Acyl-CoA N-acyltransferases (NAT) superfamily protein [Arabidopsis thaliana] putative alanine acetyl transferase [Arabidopsis thaliana] gb|AAD15401.1| putative alanine acetyl transferase [Arabidopsis thaliana] gb|ABD60717.1| [Arabidopsis thaliana] gb|AEC08624.1| GCN5-related N-acetyltransferase-like protein [Arabidopsis thaliana]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf02346g07008.1	sp|Q5NQ41|RS11_ZYMMO	***-	30S ribosomal protein S11	IPR001971 (Ribosomal protein S11)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08855g01001.1	AT2G01818.1	***-	PLATZ transcription factor family protein LENGTH=222	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf00994g07004.1	gb|AES59146.2|	*-*-	armadillo/beta-catenin-like repeat protein [Medicago truncatula]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf06193g00006.1	AT3G22104.1	***-	Phototropic-responsive NPH3 family protein LENGTH=506	IPR027356 (NPH3 domain)	
Niben101Scf08516g03001.1	sp|A2C4J9|ATPL_PROM1	****	ATP synthase subunit c	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf00220g04016.1	sp|Q9CA89|ROGFC_ARATH	*-**	Rop guanine nucleotide exchange factor 12	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf00404g00004.1	AT1G61215.1	*-*-	bromodomain 4 LENGTH=475	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf10036g04012.1	sp|P62633|CNBP_HUMAN	--**	Cellular nucleic acid-binding protein	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf01511g02018.1	sp|Q9SIQ9|VA712_ARATH	****	Vesicle-associated membrane protein 712	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf02108g03018.1	sp|B9SXY8|CSPLE_RICCO	***-	CASP-like protein 4D1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf17960g00002.1			Unknown protein		
Niben101Scf01007g00010.1	gb|AFW84079.1|	*-*-	secondary cell wall glycosyltransferase family 47 [Zea mays]	IPR004263 (Exostosin-like)	
Niben101Scf07073g00001.1	sp|Q6Z6W2|MAD57_ORYSJ	*-*-	MADS-box transcription factor 57	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf02849g08009.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf15391g02001.1	sp|Q5R8F7|PABP1_PONAB	*-**	Polyadenylate-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00127g00011.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00837g05003.1			Unknown protein		
Niben101Scf00286g01018.1	sp|Q9BV94|EDEM2_HUMAN	*-**	ER degradation-enhancing alpha-mannosidase-like protein 2	IPR001382 (Glycoside hydrolase, family 47)	GO:0004571 (mannosyl-oligosaccharide 1,2-alpha-mannosidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane)
Niben101Scf01341g03011.1	sp|O97159|CHDM_DROME	--**	Chromodomain-helicase-DNA-binding protein Mi-2 homolog	IPR009057 (Homeodomain-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01545g00009.1	sp|Q0IIJ0|NAA50_BOVIN	****	N-alpha-acetyltransferase 50	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf00946g00002.1	gb|ABY88526.1|	***-	NHL1, partial [Arabidopsis thaliana]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf00682g04010.1	emb|CDY00218.1|	*-*-	BnaA06g21190D [Brassica napus]		
Niben101Scf02494g02003.1	AT3G17850.1	*-*-	Protein kinase superfamily protein LENGTH=1296		
Niben101Scf00022g00015.1	ref|XP_002520077.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF42401.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00270g15010.1	AT1G14780.1	***-	MAC/Perforin domain-containing protein LENGTH=627	IPR020864 (Membrane attack complex component/perforin (MACPF) domain)	
Niben101Scf28259g00007.1	AT4G25500.1	***-	arginine/serine-rich splicing factor 35 LENGTH=350	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR029537 (Arginine/serine-rich-splicing factor RSP40/RSP41)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05486g01008.1	AT5G60580.2	***-	RING/U-box superfamily protein LENGTH=494	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf06151g02013.1	sp|Q9M651|RAGP2_ARATH	***-	RAN GTPase-activating protein 2	IPR003590 (Leucine-rich repeat, ribonuclease inhibitor subtype), IPR025265 (WPP domain)	
Niben101Scf04796g00025.1	AT4G16380.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=254	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf00261g00007.1	AT1G72510.1	***-	Protein of unknown function (DUF1677) LENGTH=165	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf01789g02014.1			Unknown protein		
Niben101Scf00173g06003.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03983g00043.1	ref|XP_003612586.1|	*-*-	Transcription initiation factor TFIID subunit 1-A [Medicago truncatula]	IPR001487 (Bromodomain), IPR009067 (TAFII-230 TBP-binding), IPR022591 (Transcription initiation factor TFIID subunit 1, domain of unknown function), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf02002g00006.1	sp|Q6TPK4|CYT1_ACTDE	*-**	Cysteine proteinase inhibitor 1	IPR000010 (Proteinase inhibitor I25, cystatin), IPR027214 (Cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf01795g06002.1	sp|Q8LDC8|ERF92_ARATH	****	Ethylene-responsive transcription factor 1B	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02563g06001.1			Unknown protein		
Niben101Scf07365g01041.1	ref|WP_025910290.1|	--*-	4-alpha-glucanotransferase [Enterobacter sp. 5-4]		
Niben101Scf01576g03018.1	AT3G09850.1	*-*-	D111/G-patch domain-containing protein LENGTH=781		
Niben101Scf20614g00017.1	sp|Q9SYM4|TPS1_ARATH	****	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1	IPR001830 (Glycosyl transferase, family 20), IPR003337 (Trehalose-phosphatase), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0003825 (alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity), GO:0005992 (trehalose biosynthetic process)
Niben101Scf06761g01034.1	sp|O75691|UTP20_HUMAN	*-*-	Small subunit processome component 20 homolog	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf05588g05005.1	gb|AAV38418.1|	*-**	zinc finger protein 9 (a cellular retroviral nucleic acid binding protein) [synthetic construct] gb|AAX43243.1| zinc finger protein 9 [synthetic construct]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf01205g00013.1	AT4G38950.1	****	ATP binding microtubule motor family protein LENGTH=836	IPR001752 (Kinesin motor domain), IPR021881 (Protein of unknown function DUF3490), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf05474g00004.1	ref|XP_002535202.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF27181.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11723g01004.1	sp|Q9LYB9|MBD4_ARATH	****	Methyl-CpG-binding domain-containing protein 4	IPR011124 (Zinc finger, CW-type), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf14101g01005.1			Unknown protein		
Niben101Scf05697g00004.1	AT3G01800.1	***-	Ribosome recycling factor LENGTH=267	IPR002661 (Ribosome recycling factor), IPR023584 (Ribosome recycling factor domain), IPR024946 (Arginine repressor C-terminal-like domain)	GO:0006412 (translation)
Niben101Scf03937g02018.1	gb|AFX95944.1|	***-	green-ripe protein [Solanum melongena]	IPR008496 (Protein of unknown function DUF778)	
Niben101Scf04455g00001.1			Unknown protein		
Niben101Scf03425g01002.1	sp|Q06GZ7|PSAA_DRIGR	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf01051g07003.1	sp|A2AIL4|NDUF6_MOUSE	***-	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	IPR002060 (Squalene/phytoene synthase)	GO:0009058 (biosynthetic process), GO:0016740 (transferase activity)
Niben101Scf05776g01030.1			Unknown protein		
Niben101Scf01785g04007.1	AT3G57040.1	***-	response regulator 9 LENGTH=234	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf17204g01001.1	sp|Q8LDC8|ERF92_ARATH	****	Ethylene-responsive transcription factor 1B	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf27159g01006.1	AT1G12990.1	****	beta-1,4-N-acetylglucosaminyltransferase family protein LENGTH=392	IPR006813 (Glycosyl transferase, family 17)	GO:0003830 (beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity), GO:0006487 (protein N-linked glycosylation), GO:0016020 (membrane)
Niben101Scf03427g07002.1	AT5G46070.1	****	Guanylate-binding family protein LENGTH=1082	IPR003191 (Guanylate-binding protein, C-terminal), IPR015894 (Guanylate-binding protein, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf00478g05003.1	emb|CDX68734.1|	***-	BnaC01g07190D [Brassica napus]	IPR006747 (Protein of unknown function DUF599)	
Niben101Scf03546g01013.1	sp|Q6NKW9|E138_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 8	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06318g00004.1	ref|XP_002526654.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35676.1| conserved hypothetical protein [Ricinus communis]	IPR007789 (Protein of unknown function DUF688)	
Niben101Scf03363g00001.1	sp|P0DI65|CSPLL_MAIZE	***-	CASP-like protein 16	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf07158g00002.1	sp|Q60GF7|PIGX_RAT	--*-	Phosphatidylinositol-glycan biosynthesis class X protein	IPR013233 (Glycosylphosphatidylinositol-mannosyltransferase I, PIG-X/PBN1)	GO:0005789 (endoplasmic reticulum membrane), GO:0006506 (GPI anchor biosynthetic process)
Niben101Scf12132g00013.1	emb|CDW75456.1|	****	membrane protein [Stylonychia lemnae]	IPR010721 (Protein of unknown function DUF1295)	GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
Niben101Scf01352g02015.1			Unknown protein		
Niben101Scf10329g02010.1	gb|AAC97215.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf07018g04008.1	emb|CDX74827.1|	***-	BnaA05g05730D [Brassica napus]		
Niben101Scf16007g00012.1	sp|Q9LN86|DRE1F_ARATH	*-**	Dehydration-responsive element-binding protein 1F	IPR001471 (AP2/ERF domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06382g02014.1	sp|B9KHZ4|CLPP_ANAMF	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf10910g00004.1	gb|ABU50826.1|	*-*-	GAGA-binding transcriptional activator [Arabidopsis arenosa]	IPR010409 (GAGA-binding transcriptional activator)	
Niben101Scf02480g02017.1	AT5G11850.1	*-*-	Protein kinase superfamily protein LENGTH=880		
Niben101Scf09071g00004.1	emb|CBM56257.1|	*-**	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09082g00013.1	AT4G18710.1	****	Protein kinase superfamily protein LENGTH=380	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03309g03008.1	ref|XP_002515369.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF46818.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf03326g00002.1	sp|Q9FL73|DEF69_ARATH	-**-	Defensin-like protein 69		
Niben101Scf15979g02002.1	sp|Q9SSB8|CX5B2_ARATH	*-**	Cytochrome c oxidase subunit 5b-2, mitochondrial	IPR002124 (Cytochrome c oxidase, subunit Vb)	GO:0004129 (cytochrome-c oxidase activity), GO:0005740 (mitochondrial envelope)
Niben101Scf20768g00033.1	ref|WP_010517513.1|	*-*-	alkyl hydroperoxide reductase [Mesoflavibacter zeaxanthinifaciens]	IPR012336 (Thioredoxin-like fold)	
Niben101Scf02895g04005.1			Unknown protein		
Niben101Scf03018g10007.1	AT5G50780.1	*-*-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=819		
Niben101Scf04410g04003.1	sp|O22342|ADT1_GOSHI	*-**	ADP,ATP carrier protein 1, mitochondrial	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf05629g00002.1	sp|Q53MB8|TLPH_ORYSJ	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf03520g01002.1	ref|NP_001046594.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf01701g03006.1	sp|A1L252|RANB9_DANRE	*-**	Ran-binding protein 9	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR013144 (CRA domain), IPR024964 (CTLH/CRA C-terminal to LisH motif domain)	GO:0005515 (protein binding)
Niben101Ctg14632g00001.1	sp|Q6DR20|FB110_ARATH	***-	F-box protein	IPR005174 (Protein of unknown function DUF295)	
Niben101Scf03036g00006.1	ref|XP_002509463.1|	--**	structural constituent of cell wall, putative [Ricinus communis] gb|EEF50850.1| structural constituent of cell wall, putative [Ricinus communis]	IPR006041 (Pollen Ole e 1 allergen/extensin), IPR006706 (Extensin domain)	GO:0005199 (structural constituent of cell wall), GO:0009664 (plant-type cell wall organization)
Niben101Scf15885g00034.1	gb|ACZ52183.1|	*-*-	ribosomal protein L10 (mitochondrion) [Digitalis purpurea]		
Niben101Scf02569g02011.1	sp|Q5LH11|RF1_BACFN	--**	Peptide chain release factor 1	IPR000352 (Peptide chain release factor class I/class II)	GO:0003747 (translation release factor activity), GO:0006415 (translational termination)
Niben101Scf00355g01012.1	gb|AAU95287.1|	***-	R1 [Solanum tuberosum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf05562g00011.1	sp|Q5QM99|RL37A_ORYSJ	***-	60S ribosomal protein L37a	IPR002674 (Ribosomal protein L37ae), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00725g07015.1	AT1G48960.1	***-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=219	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf09401g00023.1	sp|P14749|AGAL_CYATE	***-	Alpha-galactosidase	IPR000111 (Glycoside hydrolase, clan GH-D)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01111g06002.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf04156g01014.1	gb|KEH39727.1|	***-	ABIL1-like protein [Medicago truncatula]	IPR028457 (ABI family)	
Niben101Scf34875g00002.1	sp|Q6DFF2|BRD4B_XENLA	--*-	Bromodomain-containing protein 4B	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf14594g00004.1	sp|Q9ZU29|PP139_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf12112g04017.1			Unknown protein		
Niben101Scf11657g01001.1	AT3G08020.1	***-	PHD finger family protein LENGTH=779	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08980g00004.1	AT1G01225.1	*-*-	NC domain-containing protein-related LENGTH=260	IPR007053 (LRAT-like domain)	
Niben101Scf06654g00003.1	gb|KEH39046.1|	***-	wound-responsive family protein [Medicago truncatula]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf00819g07003.1	gb|AES71269.2|	*-*-	transmembrane amino acid transporter family protein [Medicago truncatula]		
Niben101Scf04316g08001.1	sp|Q9LRR6|CID9_ARATH	****	Polyadenylate-binding protein-interacting protein 9	IPR009818 (Ataxin-2, C-terminal), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00854g09013.1	sp|Q04716|RT03_PETHY	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf23159g00004.1	sp|Q2YTH9|SYL_STAAB	****	Leucine--tRNA ligase	IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding), IPR015413 (Methionyl/Leucyl tRNA synthetase)	GO:0000166 (nucleotide binding), GO:0002161 (aminoacyl-tRNA editing activity), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004823 (leucine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006429 (leucyl-tRNA aminoacylation)
Niben101Scf01646g01007.1	sp|Q940Y1|ORP2A_ARATH	***-	Oxysterol-binding protein-related protein 2A	IPR000648 (Oxysterol-binding protein), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf17802g00010.1	emb|CDY64746.1|	*-*-	BnaA06g37860D [Brassica napus]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf02074g06030.1	ref|XP_002519967.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF42415.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00490g01031.1	sp|Q9SLX0|IMA1B_ORYSJ	*-*-	Importin subunit alpha-1b	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf05795g02002.1	ref|WP_013924234.1|	****	major facilitator transporter [Parachlamydia acanthamoebae] ref|YP_004651064.1| metabolite transport protein ywtG [Parachlamydia acanthamoebae UV-7] emb|CCB85210.1| putative metabolite transport protein ywtG [Parachlamydia acanthamoebae UV-7]	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf11852g00012.1	sp|Q9SMB4|PSBS_TOBAC	***-	Photosystem II 22 kDa protein, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf01529g00001.1	sp|Q9ZUW3|PP172_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01119g02014.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf10846g00019.1	AT1G65800.1	****	receptor kinase 2 LENGTH=847	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021820 (S-locus receptor kinase, C-terminal)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf07584g00005.1	AT3G48050.1	***-	BAH domain ;TFIIS helical bundle-like domain LENGTH=1613	IPR001025 (Bromo adjacent homology (BAH) domain), IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf01109g00005.1	sp|O64380|PABP3_ARATH	*-**	Polyadenylate-binding protein 3	IPR009818 (Ataxin-2, C-terminal), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00128g04005.1	sp|Q9FNX5|DRP1E_ARATH	*-*-	Dynamin-related protein 1E	IPR000375 (Dynamin central domain), IPR022812 (Dynamin superfamily)	GO:0005525 (GTP binding)
Niben101Scf02300g00031.1	AT2G40770.1	*-*-	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding LENGTH=1664		
Niben101Scf02425g00027.1	sp|O42993|FKBP_SCHPO	-**-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf03546g00007.1	AT4G22260.1	*-**	Alternative oxidase family protein LENGTH=351	IPR002680 (Alternative oxidase)	GO:0009916 (alternative oxidase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07350g00004.1	AT2G26920.1	***-	Ubiquitin-associated/translation elongation factor EF1B protein LENGTH=646	IPR009060 (UBA-like)	GO:0005515 (protein binding)
Niben101Scf03474g03004.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00223g03023.1	sp|P02274|H2A1_TETPY	***-	Histone H2A.1	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf00663g05010.1	sp|Q3ECH0|FB75_ARATH	--*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf02017g01002.1			Unknown protein		
Niben101Scf01774g07007.1	sp|Q6AWY3|GRF6_ORYSJ	***-	Growth-regulating factor 6	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf00693g01011.1	sp|D3ZXD8|TM245_RAT	*-*-	Transmembrane protein 245	IPR002549 (Uncharacterised protein family UPF0118)	
Niben101Scf02895g04004.1	ref|XP_003599949.1|	***-	GRF zinc finger containing protein [Medicago truncatula]		
Niben101Scf07652g01008.1	sp|Q9LSF7|Y3518_ARATH	*-*-	B3 domain-containing protein	IPR005508 (B3 domain-containing protein), IPR015300 (DNA-binding pseudobarrel domain)	
Niben101Scf14955g00013.1	ref|XP_007020806.1|	--*-	SH3 domain-binding protein 1, putative [Theobroma cacao] gb|EOY12331.1| SH3 domain-binding protein 1, putative [Theobroma cacao]		
Niben101Scf02842g00002.1	AT3G24030.1	****	hydroxyethylthiazole kinase family protein LENGTH=276	IPR029056 (Ribokinase-like)	GO:0004417 (hydroxyethylthiazole kinase activity), GO:0009228 (thiamine biosynthetic process)
Niben101Scf01322g01004.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02074g04024.1	sp|P24794|COX1_BETVU	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07018g04009.1	AT5G05960.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=116	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02373g04023.1	sp|Q8WXF0|SRS12_HUMAN	*-*-	Serine/arginine-rich splicing factor 12	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf09455g01015.1	ref|XP_003597012.1|	*-*-	TdcA1-ORF2 protein [Medicago truncatula]		
Niben101Scf07965g02014.1	gb|AES77604.2|	****	hydrolyzing O-glycosyl compounds hydrolase [Medicago truncatula]	IPR000772 (Ricin B lectin domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02549g03023.1	sp|Q9M7R0|ALL8_OLEEU	****	Calcium-binding allergen Ole e 8	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf18955g00004.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf11508g01003.1	AT2G02450.2	*-*-	NAC domain containing protein 35 LENGTH=414	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf14118g01004.1	sp|A8MSA6|ESF11_ARATH	--*-	EMBRYO SURROUNDING FACTOR 1.1		
Niben101Scf07926g01002.1	ref|XP_002533928.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF28457.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07004g02007.1	ref|XP_002510248.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52435.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01980g12011.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf05310g05003.1	sp|O14681|EI24_HUMAN	***-	Etoposide-induced protein 2.4 homolog	IPR009890 (Etoposide-induced 2.4)	
Niben101Scf00077g00011.1	gb|ABA91340.1|	--*-	VQ motif family protein, expressed [Oryza sativa Japonica Group]	IPR008889 (VQ)	
Niben101Scf11657g01002.1	sp|Q8X5V6|DUSA_ECO57	****	tRNA-dihydrouridine synthase A	IPR001269 (tRNA-dihydrouridine synthase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008033 (tRNA processing), GO:0017150 (tRNA dihydrouridine synthase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02798g01019.1	ref|YP_006291827.1|	*-*-	orf43 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81181.1| orf43 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf06214g00003.1	sp|P42327|ADH2_GEOSE	*-*-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01895g00020.1	sp|Q9FKB5|KRP3_ARATH	*-**	Cyclin-dependent kinase inhibitor 3	IPR003175 (Cyclin-dependent kinase inhibitor)	GO:0004861 (cyclin-dependent protein serine/threonine kinase inhibitor activity), GO:0005634 (nucleus), GO:0007050 (cell cycle arrest)
Niben101Scf00414g10007.1	AT5G55850.2	***-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=130	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf13762g01002.1	emb|CDY29265.1|	***-	BnaC01g19170D [Brassica napus]		
Niben101Scf01646g01008.1	sp|Q05085|PTR7_ARATH	***-	Protein NRT1/ PTR FAMILY 6.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf22186g00001.1			Unknown protein		
Niben101Scf10502g01018.1	sp|Q54X41|SOSSB_DICDI	***-	SOSS complex subunit B homolog	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf02502g12009.1	sp|Q9M2H7|PEL2_ARATH	*-*-	Protein PELOTA 2	IPR004405 (Translation release factor  pelota), IPR029064 (50S ribosomal protein L30e-like)	GO:0070481 (nuclear-transcribed mRNA catabolic process, non-stop decay), GO:0070966 (nuclear-transcribed mRNA catabolic process, no-go decay), GO:0071025 (RNA surveillance)
Niben101Scf01171g08005.1	sp|A5FLM7|SYM_FLAJ1	****	Methionine--tRNA ligase	IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding), IPR012340 (Nucleic acid-binding, OB-fold), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR015413 (Methionyl/Leucyl tRNA synthetase)	GO:0000049 (tRNA binding), GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004825 (methionine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006431 (methionyl-tRNA aminoacylation)
Niben101Scf01804g00080.1			Unknown protein		
Niben101Scf01171g04009.1	sp|B9MDJ8|DNAJ_ACIET	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf12017g05022.1	AT4G16340.1	*-**	guanyl-nucleotide exchange factors;GTPase binding;GTP binding LENGTH=1830	IPR026791 (Dedicator of cytokinesis)	GO:0005085 (guanyl-nucleotide exchange factor activity), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf08721g01033.1	AT4G02860.1	***-	Phenazine biosynthesis PhzC/PhzF protein LENGTH=313	IPR003719 (Phenazine biosynthesis PhzF protein)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process)
Niben101Scf03737g06007.1	AT2G10940.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=291	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00271g04027.1	gb|ABV21218.1|	*-*-	[Arabidopsis thaliana]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf14180g00001.1	AT3G19090.1	****	RNA-binding protein LENGTH=455	IPR009818 (Ataxin-2, C-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf09271g00001.1	sp|A2Z259|ZHD1_ORYSI	***-	Zinc-finger homeodomain protein 1	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf06280g02016.1	sp|O64740|SC13B_ARATH	***-	Protein transport protein SEC13 homolog B	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf08926g01015.1			Unknown protein		
Niben101Scf01157g00003.1	sp|Q8LDK3|NDUB2_ARATH	***-	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2	IPR026627 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2)	GO:0005743 (mitochondrial inner membrane), GO:0005747 (mitochondrial respiratory chain complex I)
Niben101Scf05761g01021.1	sp|Q5SMI4|RL393_ORYSJ	*-*-	60S ribosomal protein L39-3	IPR000077 (Ribosomal protein L39e), IPR023626 (Ribosomal protein L39e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05034g05003.1	sp|Q9M2Z4|MSBP2_ARATH	****	Membrane steroid-binding protein 2	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf01341g03010.1	AT4G34270.1	***-	TIP41-like family protein LENGTH=290	IPR007303 (TIP41-like protein)	
Niben101Scf26800g00002.1	sp|Q96NC0|ZMAT2_HUMAN	****	Zinc finger matrin-type protein 2	IPR003604 (Zinc finger, U1-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf05697g00006.1	sp|P34885|KPC1B_CAEEL	*-**	Protein kinase C-like 1B	IPR011009 (Protein kinase-like domain), IPR011993 (Pleckstrin homology-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10043g00024.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04133g02024.1	sp|Q9THV5|RPOC2_SINAL	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf02299g02013.1	sp|Q0PF16|TRIM5_MACMU	*-*-	Tripartite motif-containing protein 5	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09234g00003.1	ref|NP_188895.1|	****	GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] dbj|BAB01471.1| alanine acetyl transferase-like protein [Arabidopsis thaliana] gb|ABN04781.1| [Arabidopsis thaliana] gb|AEE76653.1| GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf00022g00016.1	sp|Q5ZM74|RN141_CHICK	--*-	RING finger protein 141	IPR006845 (Pex, N-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR025654 (Peroxisome biogenesis factor 10)	GO:0005515 (protein binding), GO:0005779 (integral component of peroxisomal membrane), GO:0007031 (peroxisome organization), GO:0008270 (zinc ion binding), GO:0016558 (protein import into peroxisome matrix)
Niben101Scf22924g00007.1	AT3G42725.1	***-	Putative membrane lipoprotein LENGTH=202	IPR023298 (P-type ATPase,  transmembrane domain)	
Niben101Scf08126g00009.1	sp|M1BYJ7|ENDB1_SOLTU	****	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial	IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04396g01010.1	gb|EEQ42357.1|	***-	translation initiation factor eIF-2B epsilon subunit [Candida albicans WO-1]	IPR011004 (Trimeric LpxA-like), IPR016024 (Armadillo-type fold), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf09512g04028.1	emb|CDX74355.1|	*-*-	BnaA03g26920D [Brassica napus]		
Niben101Scf01478g07004.1	sp|Q9LFL5|PP390_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00770g01003.1	sp|Q6AVI0|RSLE2_ORYSJ	***-	Zinc finger BED domain-containing protein RICESLEEPER 2	IPR003656 (Zinc finger, BED-type), IPR012337 (Ribonuclease H-like domain), IPR025525 (hAT-like transposase, RNase-H fold)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding)
Niben101Scf02451g01004.1	sp|B6EPQ0|BIOH_ALISL	***-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04118g03001.1	sp|Q9R0S5|YLAT1_RAT	-***	Y+L amino acid transporter 1	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf00477g00010.1	sp|Q9LME6|MBD8_ARATH	*-**	Methyl-CpG-binding domain-containing protein 8	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf03263g00007.1	AT4G28760.1	***-	Protein of unknown function (DUF3741) LENGTH=924	IPR022212 (Protein of unknown function DUF3741), IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf00630g04006.1	sp|Q9FGY1|BXL1_ARATH	***-	Beta-D-xylosidase 1	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026891 (Fibronectin type III-like domain), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf10205g00003.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf05901g01005.1			Unknown protein		
Niben101Scf02499g02007.1	sp|Q9ZUU0|WRK44_ARATH	*-**	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05324g01001.1	AT3G26050.1	*-*-	TPX2 (targeting protein for Xklp2) protein family LENGTH=533	IPR027329 (TPX2, C-terminal domain)	
Niben101Scf04103g11004.1	sp|P0C550|AKT1_ORYSI	--*-	Potassium channel AKT1		
Niben101Scf05697g03012.1	sp|A6QLT2|MTMR2_BOVIN	*-*-	Myotubularin-related protein 2	IPR004182 (GRAM domain), IPR011993 (Pleckstrin homology-like domain), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf04607g02021.1	sp|Q0WPZ6|PP158_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00254g04005.1	AT5G41460.1	***-	Protein of unknown function (DUF604) LENGTH=524	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf00440g02001.1	sp|Q9ZPS7|TMN3_ARATH	***-	Transmembrane 9 superfamily member 3	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf04328g00044.1	sp|Q6EW49|PSAB_NYMAL	****	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf05536g01013.1	AT4G38970.1	****	fructose-bisphosphate aldolase 2 LENGTH=398	IPR000741 (Fructose-bisphosphate aldolase, class-I), IPR013785 (Aldolase-type TIM barrel), IPR029768 (Fructose-bisphosphate aldolase class-I active site)	GO:0003824 (catalytic activity), GO:0004332 (fructose-bisphosphate aldolase activity), GO:0006096 (glycolytic process)
Niben101Scf04608g01007.1	sp|P49215|RS17_SOLLC	***-	40S ribosomal protein S17	IPR001210 (Ribosomal protein S17e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07532g02017.1	sp|P62302|RS13_SOYBN	***-	40S ribosomal protein S13	IPR000589 (Ribosomal protein S15), IPR012606 (Ribosomal protein S13/S15, N-terminal)	
Niben101Scf00082g08019.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00870g11001.1	AT1G72510.1	***-	Protein of unknown function (DUF1677) LENGTH=165	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf00261g00009.1	AT5G67080.1	****	mitogen-activated protein kinase kinase kinase 19 LENGTH=344	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05476g01002.1	sp|O80932|EXPA3_ARATH	***-	Expansin-A3	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf05822g05007.1	ref|NP_001066014.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf05385g03007.1	sp|Q8VZ49|ADHL4_ARATH	***-	Alcohol dehydrogenase-like 4	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09089g01024.1	emb|CAA62734.1|	***-	beta-fructofuranosidase (invertase) [Solanum lycopersicum]	IPR001362 (Glycoside hydrolase, family 32), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02267g00005.1	sp|Q9LUQ6|RL192_ARATH	***-	60S ribosomal protein L19-2	IPR000196 (Ribosomal protein L19/L19e domain), IPR023638 (Ribosomal protein L19/L19e conserved site), IPR027547 (Ribosomal protein L19/L19e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00369g21004.1	sp|Q6NPT8|PP2B1_ARATH	***-	F-box protein PP2-B1	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf05645g03006.1	sp|Q8U4K7|PGK2_PYRFU	*-*-	2-phosphoglycerate kinase	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf05734g00008.1			Unknown protein		
Niben101Scf07008g02005.1	sp|Q9LQ16|PPR94_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf24679g00011.1	sp|Q8GZ17|COBL7_ARATH	***-	COBRA-like protein 7	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf00149g03002.1	sp|Q9SDW0|TGT3A_ARATH	*-**	Trihelix transcription factor GT-3a	IPR001005 (SANT/Myb domain), IPR027775 (C2H2- zinc finger protein family)	GO:0003682 (chromatin binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05620g00004.1	sp|Q5HZ36|GAT21_ARATH	*-**	GATA transcription factor 21	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00369g19018.1	sp|Q8RWU5|FBL3_ARATH	*-*-	F-box/LRR-repeat protein 3	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf00487g00011.1	sp|Q1RMX2|UB2D2_BOVIN	***-	Ubiquitin-conjugating enzyme E2 D2	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf08690g02018.1	AT3G61780.1	*-*-	embryo defective 1703 LENGTH=1121		
Niben101Scf03204g02006.1	sp|Q93VY3|NAC72_ARATH	***-	NAC domain-containing protein 72	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00854g11025.1	sp|P08742|COX1_MAIZE	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09668g00012.1	sp|P93332|NOD3_MEDTR	--*-	Bidirectional sugar transporter N3		
Niben101Scf02760g02005.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf09209g00001.1			Unknown protein		
Niben101Scf01560g01006.1			Unknown protein		
Niben101Scf00220g04014.1	AT4G00730.1	*-**	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=802	IPR002913 (START domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf01013g02004.1	sp|Q9XHP0|11S2_SESIN	***-	11S globulin seed storage protein 2	IPR006044 (11-S seed storage protein, plant)	GO:0045735 (nutrient reservoir activity)
Niben101Scf02465g00004.1	sp|Q54UK0|PLDA_DICDI	*-**	Phospholipase D A	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0004630 (phospholipase D activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0046470 (phosphatidylcholine metabolic process)
Niben101Scf00245g02007.1	sp|Q9SUY0|FB244_ARATH	*-*-	F-box protein	IPR017451 (F-box associated interaction domain)	
Niben101Scf09149g01006.1	sp|Q8LG89|BABL_ARATH	***-	Basic blue protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf03332g01008.1	sp|Q9FVV1|GDL28_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00317g11004.1	sp|Q0E2Z7|RH41_ORYSJ	*-*-	DEAD-box ATP-dependent RNA helicase 41	IPR007529 (Zinc finger, HIT-type)	
Niben101Scf04037g01012.1	gb|ACG33194.1|	*-*-	transmembrane protein 50A [Zea mays]	IPR007919 (Uncharacterised protein family UPF0220)	
Niben101Scf05002g03023.1	gb|AAM47025.1|	*-*-	nam-like protein 1 [Petunia x hybrida]		
Niben101Scf04557g01004.1	AT5G09840.1	***-	Putative endonuclease or glycosyl hydrolase LENGTH=924	IPR021139 (NYN domain, limkain-b1-type), IPR024768 (Meiosis arrest female protein 1), IPR025605 (OST-HTH/LOTUS domain)	GO:0005777 (peroxisome), GO:0010468 (regulation of gene expression)
Niben101Scf01274g08010.1	AT2G41370.1	***-	Ankyrin repeat family protein / BTB/POZ domain-containing protein LENGTH=491	IPR011333 (BTB/POZ fold), IPR020683 (Ankyrin repeat-containing domain), IPR024228 (Domain of unknown function DUF3420)	GO:0005515 (protein binding)
Niben101Scf02145g07012.1	AT1G11925.1	***-	Stigma-specific Stig1 family protein LENGTH=140	IPR006969 (Stigma-specific protein Stig1)	
Niben101Scf05960g01002.1			Unknown protein		
Niben101Scf03903g04005.1	sp|Q39846|SBP65_SOYBN	***-	Seed biotin-containing protein SBP65		
Niben101Scf01422g00019.1	sp|Q811S9|GNL3_RAT	--*-	Guanine nucleotide-binding protein-like 3	IPR014813 (Guanine nucleotide-binding protein-like 3, N-terminal domain)	
Niben101Scf09978g01020.1	sp|Q6C9Q1|SPB1_YARLI	*-*-	AdoMet-dependent rRNA methyltransferase SPB1		
Niben101Scf11723g00019.1	AT1G63900.2	****	E3 Ubiquitin ligase family protein LENGTH=347	IPR022170 (Mitochondrial ubiquitin ligase activator of NFKB 1)	GO:0004842 (ubiquitin-protein transferase activity), GO:0007005 (mitochondrion organization)
Niben101Scf08869g01015.1	AT2G32150.1	****	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=263	IPR006439 (HAD hydrolase, subfamily IA), IPR010237 (Pyrimidine 5-nucleotidase), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf10920g01028.1	sp|Q3V0C5|UBP48_MOUSE	*-**	Ubiquitin carboxyl-terminal hydrolase 48	IPR008974 (TRAF-like), IPR024729 (ICP0-binding domain of Ubiquitin-specific protease 7), IPR028889 (Ubiquitin specific protease domain), IPR029346 (Ubiquitin carboxyl-terminal hydrolase, C-terminal)	GO:0005515 (protein binding), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf35149g00005.1	sp|Q9UJW7|ZN229_HUMAN	--*-	Zinc finger protein 229	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00830g03007.1	sp|Q84W80|FBL42_ARATH	***-	F-box/LRR-repeat protein	IPR006566 (FBD domain)	
Niben101Scf28267g00014.1	AT3G21760.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=485	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03226g04018.1	sp|Q9FFR9|CHX18_ARATH	****	Cation/H(+) antiporter 18	IPR006153 (Cation/H+ exchanger), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00439g10037.1	dbj|BAD66730.1|	-**-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf04995g09003.1	sp|A2YNI2|MAD18_ORYSI	*-*-	MADS-box transcription factor 18	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00927g13005.1	ref|NP_001045774.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAF07688.1| [Oryza sativa Japonica Group]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf00047g03001.1	AT2G29710.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=467	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04830g00010.1	ref|XP_003612076.1|	-**-	GRF zinc finger containing protein [Medicago truncatula] gb|AES95034.1| GRF zinc finger protein [Medicago truncatula]		
Niben101Scf00854g01071.1			Unknown protein		
Niben101Scf06189g02006.1	ref|XP_002525596.1|	****	hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gb|EEF36714.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00314g02020.1	sp|Q9M643|CCI1_ARATH	***-	Cycloeucalenol cycloisomerase		
Niben101Scf01219g06028.1	AT3G23530.1	*-*-	Cyclopropane-fatty-acyl-phospholipid synthase LENGTH=867		
Niben101Scf01240g10022.1			Unknown protein		
Niben101Scf05530g01002.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf09710g00024.1			Unknown protein		
Niben101Scf09555g01004.1	sp|Q9SU40|SKU5_ARATH	***-	Monocopper oxidase-like protein SKU5	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00298g02009.1	AT3G14080.1	***-	Small nuclear ribonucleoprotein family protein LENGTH=128	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf04387g01030.1	AT3G07480.1	***-	2Fe-2S ferredoxin-like superfamily protein LENGTH=159	IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf05827g01010.1	AT5G26110.1	****	Protein kinase superfamily protein LENGTH=226	IPR011009 (Protein kinase-like domain), IPR022495 (Serine/threonine-protein kinase Bud32)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00822g02011.1	emb|CDY63899.1|	***-	BnaA01g34640D [Brassica napus]		
Niben101Scf11122g01012.1			Unknown protein		
Niben101Scf04115g00014.1	AT4G09900.1	***-	methyl esterase 12 LENGTH=349	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05044g02014.1	sp|Q9M7J4|MFP1_TOBAC	***-	MAR-binding filament-like protein 1-1		
Niben101Scf13644g00014.1	sp|O75891|AL1L1_HUMAN	--*-	Cytosolic 10-formyltetrahydrofolate dehydrogenase		
Niben101Scf06819g00001.1	gb|AES60863.2|	****	Lipid transfer protein [Medicago truncatula]	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Ctg07034g00003.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01767g02001.1	sp|Q9SR40|LAC7_ARATH	***-	Laccase-7	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10434g00013.1			Unknown protein		
Niben101Scf02451g10010.1	sp|Q13367|AP3B2_HUMAN	*-**	AP-3 complex subunit beta-2	IPR002553 (Clathrin/coatomer adaptor, adaptin-like, N-terminal), IPR016024 (Armadillo-type fold), IPR026739 (AP complex subunit beta)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030123 (AP-3 adaptor complex)
Niben101Scf04375g08002.1	sp|Q8SR76|TCPG_ENCCU	*-*-	T-complex protein 1 subunit gamma	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf11084g02019.1	sp|F4J2K2|FPGS2_ARATH	*-*-	Folylpolyglutamate synthase		
Niben101Scf05961g03018.1	sp|Q75VR0|TPC1B_TOBAC	*-*-	Two pore calcium channel protein 1B		
Niben101Scf10768g00002.1	emb|CDY11048.1|	***-	BnaA03g47070D [Brassica napus]		
Niben101Scf06283g00001.1	sp|Q13303|KCAB2_HUMAN	***-	Voltage-gated potassium channel subunit beta-2	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf03757g03001.1	AT5G04870.1	****	calcium dependent protein kinase 1 LENGTH=610	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04096g11017.1	sp|Q43766|NLTP3_HORVU	****	Non-specific lipid-transfer protein 3	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf02362g02014.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03870g01007.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00561g00015.1	AT1G09320.1	*-*-	agenet domain-containing protein LENGTH=517	IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf03362g03002.1			Unknown protein		
Niben101Scf00983g00001.1	gb|AAD02562.1|	***-	PGPS/NH22 [Petunia x hybrida]		
Niben101Scf01001g07022.1	sp|Q9C652|RBP1_ARATH	--**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07346g01006.1	gb|AET04599.2|	*-*-	UPF0202 plant-like protein [Medicago truncatula]		
Niben101Scf01694g09007.1	sp|Q9LN01|PPR21_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf07370g02008.1	sp|Q6NLB1|FB118_ARATH	***-	F-box protein		
Niben101Scf03886g04009.1	sp|Q8T197|DHRS7_DICDI	****	Dehydrogenase/reductase SDR family protein 7-like	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Ctg15451g00003.1	sp|Q9M817|PTR6_ARATH	***-	Protein NRT1/ PTR FAMILY 1.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00337g07012.1	AT3G55330.1	***-	PsbP-like protein 1 LENGTH=230	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf01107g00020.1	sp|Q3B7I8|LYSM2_XENTR	*-*-	LysM and putative peptidoglycan-binding domain-containing protein 2	IPR018392 (LysM domain)	
Niben101Scf01729g01013.1	sp|Q9LN94|EXPA7_ARATH	***-	Expansin-A7	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf02230g01003.1	AT5G65240.2	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=640	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf02563g01009.1	AT5G66710.1	****	Protein kinase superfamily protein LENGTH=405	IPR011009 (Protein kinase-like domain), IPR015784 (Putative serine/threonine-protein kinase, plants)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09403g00024.1	AT3G62860.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=348	IPR022742 (Putative lysophospholipase), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02730g01028.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08804g03005.1	gb|AES64334.2|	*-*-	F-box protein interaction domain protein [Medicago truncatula]	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf02291g04021.1	sp|Q3SWZ6|SBDS_BOVIN	****	Ribosome maturation protein SBDS	IPR002140 (Ribosome maturation protein SBDS)	GO:0042254 (ribosome biogenesis)
Niben101Scf06625g02011.1	emb|CAD41269.1|	***-	product [Oryza sativa Japonica Group]	IPR007608 (Senescence regulator S40)	
Niben101Scf11818g00001.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf00258g01003.1	sp|Q8GUM5|NICA_ARATH	*-*-	Nicastrin		
Niben101Scf14688g03005.1	AT1G80130.1	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=305	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf12293g00001.1	AT4G34860.1	***-	Plant neutral invertase family protein LENGTH=571	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf01856g02002.1	AT3G06840.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=187		
Niben101Scf13646g00004.1			Unknown protein		
Niben101Scf00372g03010.1			Unknown protein		
Niben101Scf00149g01013.1	sp|Q92797|SYMPK_HUMAN	*-*-	Symplekin	IPR016024 (Armadillo-type fold), IPR021850 (Symplekin/Pta1), IPR022075 (Symplekin  C-terminal)	GO:0005488 (binding)
Niben101Scf21299g00001.1	ref|XP_007017102.1|	--*-	RING/FYVE/PHD zinc finger superfamily protein, putative [Theobroma cacao] gb|EOY34721.1| RING/FYVE/PHD zinc finger superfamily protein, putative [Theobroma cacao]		
Niben101Scf01026g01003.1	sp|P05100|3MG1_ECOLI	****	DNA-3-methyladenine glycosylase 1	IPR005019 (Methyladenine glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0008725 (DNA-3-methyladenine glycosylase activity)
Niben101Scf00425g00005.1	AT3G48100.1	***-	response regulator 5 LENGTH=184	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf06344g01017.1	gb|AID60083.1|	***-	zinc finger protein 3C [Brassica napus]		
Niben101Scf05440g04011.1	sp|Q3E911|PP400_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf13741g01013.1			Unknown protein		
Niben101Scf01285g04010.1	AT5G39785.2	*-*-	Protein of unknown function (DUF1666) LENGTH=607	IPR008195 (Ribosomal protein L34Ae), IPR012870 (Protein of unknown function DUF1666)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07250g03027.1	AT3G51280.1	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=430	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02509g07005.1	ref|XP_002513166.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF49157.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06482g01005.1	sp|Q6NQJ6|RNR1_ARATH	--*-	Ribonuclease II, chloroplastic/mitochondrial		
Niben101Scf07006g00007.1	AT4G32250.1	*-**	Protein kinase superfamily protein LENGTH=611	IPR011009 (Protein kinase-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0008270 (zinc ion binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0046872 (metal ion binding)
Niben101Scf12364g00004.1			Unknown protein		
Niben101Scf05118g01006.1	AT3G61050.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=510	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01956g03004.1	AT3G06780.1	*-*-	glycine-rich protein LENGTH=201		
Niben101Scf05993g00020.1	sp|Q58445|RPOA1_METJA	*-**	DNA-directed RNA polymerase subunit A'	IPR015699 (DNA-directed RNA pol I, largest subunit)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf04905g00009.1			Unknown protein	IPR005508 (B3 domain-containing protein)	
Niben101Scf00426g02010.1	sp|Q9SV07|ASAT1_ARATH	*-*-	Acyl-CoA--sterol O-acyltransferase 1		
Niben101Scf01972g08001.1			Unknown protein		
Niben101Scf00854g02005.1			Unknown protein		
Niben101Scf05846g00013.1	AT4G38840.1	***-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01636g01006.1	AT1G60140.1	****	trehalose phosphate synthase LENGTH=861	IPR001830 (Glycosyl transferase, family 20), IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf04060g03003.1	AT2G17760.1	***-	Eukaryotic aspartyl protease family protein LENGTH=513	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01750g14033.1	sp|Q9FMR5|VA714_ARATH	****	Vesicle-associated membrane protein 714	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf11922g01017.1	AT2G28270.1	***-	Cysteine/Histidine-rich C1 domain family protein LENGTH=248	IPR011424 (C1-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05102g03003.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11124g00004.1	gb|AAC72541.1|	***-	male sterility MS5 [Arabidopsis thaliana]		
Niben101Scf08206g01019.1	AT4G27670.1	***-	heat shock protein 21 LENGTH=227	IPR008978 (HSP20-like chaperone)	
Niben101Scf00833g00004.1	sp|O49884|RL30_LUPLU	***-	60S ribosomal protein L30	IPR000231 (Ribosomal protein L30e), IPR022991 (Ribosomal protein L30e, conserved site), IPR029064 (50S ribosomal protein L30e-like)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09445g01003.1	AT5G25820.1	***-	Exostosin family protein LENGTH=654	IPR004263 (Exostosin-like)	
Niben101Scf01402g02006.1	sp|Q9LFR1|PTR50_ARATH	*-*-	Protein NRT1/ PTR FAMILY 5.8	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf20035g00003.1	sp|Q8LGG8|USPAL_ARATH	-***	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf04783g11001.1	AT3G06145.1	***-	unknown protein; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=166		
Niben101Scf04134g03003.1	sp|Q46629|AMSH_ERWAM	--*-	Amylovoran export outer membrane protein AmsH		
Niben101Scf09701g01011.1	emb|CDY37809.1|	-**-	BnaAnng04700D [Brassica napus]		
Niben101Scf03786g04002.1	ref|XP_010109361.1|	*-*-	Alpha-1,4 glucan phosphorylase L-2 isozyme [Morus notabilis] gb|EXC22066.1| Alpha-1,4 glucan phosphorylase L-2 isozyme [Morus notabilis]		
Niben101Scf01607g06019.1	emb|CDY24730.1|	*-*-	BnaC04g13350D [Brassica napus]		
Niben101Scf04556g04012.1	sp|Q9ZQI8|NLTL2_ARATH	*-**	Non-specific lipid-transfer protein-like protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf14708g00023.1	AT4G14210.1	***-	phytoene desaturase 3 LENGTH=566	IPR014102 (Phytoene desaturase), IPR016040 (NAD(P)-binding domain)	GO:0016117 (carotenoid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0055114 (oxidation-reduction process)
Niben101Scf01922g02003.1	sp|Q8LAU9|GATA1_ARATH	****	GATA transcription factor 1	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04813g02022.1	AT4G22810.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=324	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf13438g00001.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09217g00012.1	gb|ADV29615.1|	***-	At5g37260-like protein [Solanum arcanum]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf10389g01002.1	emb|CDY19372.1|	*-*-	BnaC05g08810D [Brassica napus]		
Niben101Scf00962g04004.1			Unknown protein		
Niben101Scf02291g05005.1	sp|Q8W234|SEUSS_ARATH	*-*-	Transcriptional corepressor SEUSS	IPR029005 (LIM-domain binding protein/SEUSS)	
Niben101Scf03753g00008.1	sp|O80580|MLO15_ARATH	*-*-	MLO-like protein 15	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf04174g01004.1	sp|P46417|GSTX3_SOYBN	***-	Glutathione S-transferase 3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf02172g01006.1	AT4G11400.1	*-*-	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=573		
Niben101Scf05387g13001.1	sp|Q4KLF3|KTI12_XENLA	***-	Protein KTI12 homolog	IPR013641 (Chromatin associated protein KTI12)	
Niben101Scf14323g01005.1			Unknown protein		
Niben101Scf04951g02002.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]	IPR002182 (NB-ARC)	GO:0043531 (ADP binding)
Niben101Scf01787g00035.1	ref|XP_003617868.1|	--*-	ABC transporter G family member [Medicago truncatula]		
Niben101Scf03457g01012.1	sp|Q8LPG9|IQD14_ARATH	*-*-	Protein IQ-DOMAIN 14	IPR006954 (Moulting cycle MLT-10-like protein)	
Niben101Scf04815g01027.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05552g10018.1	AT5G62150.1	*-*-	peptidoglycan-binding LysM domain-containing protein LENGTH=102	IPR018392 (LysM domain)	
Niben101Scf03127g00002.1	sp|Q9LHD1|AB15B_ARATH	*-*-	ABC transporter B family member 15	IPR011527 (ABC transporter type 1, transmembrane domain)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf02317g00002.1	emb|CDX82932.1|	***-	BnaC01g13820D [Brassica napus]		
Niben101Scf05252g00001.1			Unknown protein		
Niben101Scf03376g03009.1	gb|KEH43980.1|	*-*-	MADS-box transcription factor family protein [Medicago truncatula]		
Niben101Scf02407g01003.1	gb|AAK13103.1|AC078839_19	*-**	Helicase-like protein [Oryza sativa Japonica Group]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf02798g01060.1	sp|Q6L398|PSAA_SACHY	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf01964g08023.1	AT5G22510.1	***-	alkaline/neutral invertase LENGTH=617	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf02918g01005.1			Unknown protein		
Niben101Scf00416g06002.1	AT1G16860.1	***-	Ubiquitin-specific protease family C19-related protein LENGTH=474		
Niben101Scf28415g00006.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Ctg14375g00002.1	sp|Q9FLS0|FB253_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf30320g00011.1	AT5G28770.2	****	bZIP transcription factor family protein LENGTH=314	IPR004827 (Basic-leucine zipper domain), IPR020983 (Basic leucine-zipper, C-terminal)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf18637g02008.1	AT1G11430.1	*-*-	plastid developmental protein DAG, putative LENGTH=232		
Niben101Scf00741g01019.1	AT3G44970.1	***-	Cytochrome P450 superfamily protein LENGTH=479	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09442g02001.1			Unknown protein		
Niben101Scf10679g00004.1	sp|Q9C7A2|Y3236_ARATH	--*-	Ankyrin repeat-containing protein	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf01942g01007.1	sp|B3H672|PP317_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00893g01019.1	AT2G16370.1	****	thymidylate synthase 1 LENGTH=519	IPR000398 (Thymidylate synthase), IPR012262 (Bifunctional dihydrofolate reductase/thymidylate synthase), IPR023451 (Thymidylate synthase/dCMP hydroxymethylase domain), IPR024072 (Dihydrofolate reductase-like domain)	GO:0004146 (dihydrofolate reductase activity), GO:0004799 (thymidylate synthase activity), GO:0006231 (dTMP biosynthetic process), GO:0006545 (glycine biosynthetic process), GO:0006730 (one-carbon metabolic process), GO:0009165 (nucleotide biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf11670g02015.1	gb|ABY88553.1|	***-	NHL1, partial [Arabidopsis thaliana]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf08975g01010.1	sp|Q01667|CAB6_ARATH	***-	Chlorophyll a-b binding protein 6, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf01350g05012.1	ref|XP_002533184.1|	--*-	Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis] gb|EEF29198.1| Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]		
Niben101Scf06684g03025.1	sp|Q6GG09|KPYK_STAAR	****	Pyruvate kinase	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf17891g03007.1	AT4G00340.1	****	receptor-like protein kinase 4 LENGTH=818	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf03036g00005.1			Unknown protein		
Niben101Scf11215g00027.1			Unknown protein		
Niben101Scf06826g05005.1	sp|B1AZ99|OTUD3_MOUSE	--*-	OTU domain-containing protein 3	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf01112g02010.1	sp|Q55674|FUMC_SYNY3	****	Fumarate hydratase class II	IPR000362 (Fumarate lyase family), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0004333 (fumarate hydratase activity), GO:0006099 (tricarboxylic acid cycle), GO:0006106 (fumarate metabolic process), GO:0016829 (lyase activity), GO:0045239 (tricarboxylic acid cycle enzyme complex)
Niben101Scf04787g02004.1	sp|P49211|RL321_ARATH	***-	60S ribosomal protein L32-1	IPR001515 (Ribosomal protein L32e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00837g12002.1			Unknown protein	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf04674g04010.1	sp|Q9SUY0|FB244_ARATH	*-*-	F-box protein		
Niben101Scf01833g00003.1	sp|Q5RCG9|PFD3_PONAB	****	Prefoldin subunit 3	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex)
Niben101Scf11453g01002.1			Unknown protein	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf01212g03003.1	sp|O80341|EF102_ARATH	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02414g02013.1	sp|Q8VZR7|PTR30_ARATH	***-	Protein NRT1/ PTR FAMILY 5.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00525g04009.1	AT3G44190.1	****	FAD/NAD(P)-binding oxidoreductase family protein LENGTH=367	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03327g00004.1	sp|Q56YT0|LAC3_ARATH	*-*-	Laccase-3	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07414g02008.1	sp|P28811|MMSB_PSEAE	****	3-hydroxyisobutyrate dehydrogenase	IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR015815 (Hydroxy monocarboxylic acid anion dehydrogenase, HIBADH-type), IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0006573 (valine metabolic process), GO:0008442 (3-hydroxyisobutyrate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10524g03007.1	AT5G27690.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=352	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf02588g00008.1	emb|CDX80520.1|	***-	BnaC07g29240D [Brassica napus]		
Niben101Scf08871g01002.1	dbj|BAA21017.1|	*-**	DNA-binding protein [Daucus carota]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02044g01003.1	gb|AIW09143.1|	***-	progesterone 5-beta-reductase 1 [Catharanthus roseus]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf05697g11005.1	sp|Q9SSC7|LOR5_ARATH	***-	Protein LURP-one-related 5	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf06864g01005.1	sp|P00210|FER1_DESAF	--*-	Ferredoxin-1		
Niben101Scf34114g00003.1	sp|P27061|PPA1_SOLLC	****	Acid phosphatase 1	IPR005519 (Acid phosphatase (Class B)), IPR023214 (HAD-like domain)	GO:0003993 (acid phosphatase activity)
Niben101Scf06727g00025.1	sp|Q89AJ2|TRXB_BUCBP	****	Thioredoxin reductase	IPR012336 (Thioredoxin-like fold), IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0004791 (thioredoxin-disulfide reductase activity), GO:0005737 (cytoplasm), GO:0016491 (oxidoreductase activity), GO:0019430 (removal of superoxide radicals), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00725g07014.1	gb|ABF94985.1|	*-*-	hAT family dimerisation domain containing protein [Oryza sativa Japonica Group]	IPR003656 (Zinc finger, BED-type), IPR008906 (HAT dimerisation domain, C-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf06186g07002.1			Unknown protein		
Niben101Scf03930g03010.1	emb|CDX81710.1|	*-*-	BnaC08g38910D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf05795g02001.1	AT2G44830.1	*-**	Protein kinase superfamily protein LENGTH=765	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06725g02001.1	gb|ADG39269.1|	*-*-	AT5G55820-like protein [Capsella grandiflora]	IPR005635 (Inner centromere protein, ARK-binding domain)	
Niben101Scf01688g00001.1	sp|P0C870|JMJD7_HUMAN	***-	JmjC domain-containing protein 7	IPR003347 (JmjC domain)	
Niben101Scf05348g04001.1	sp|Q6NNI8|SAP1_ARATH	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 1	IPR000058 (Zinc finger, AN1-type), IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf02199g01010.1	AT5G12220.1	***-	las1-like family protein LENGTH=611	IPR007174 (Las1-like)	
Niben101Scf01398g00003.1	gb|AAG31013.1|	*-*-	tospovirus resistance protein A [Solanum lycopersicum]		
Niben101Scf03492g00008.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf03948g02003.1	AT2G27230.1	*-*-	transcription factor-related LENGTH=650	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf00338g09006.1	AT1G48480.1	****	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04551g04013.1	sp|Q9FJZ9|PER72_ARATH	****	Peroxidase 72	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00482g10003.1	sp|A0B8K9|CARB_METTP	***-	Carbamoyl-phosphate synthase large chain	IPR006275 (Carbamoyl-phosphate synthase, large subunit), IPR011607 (Methylglyoxal synthase-like domain), IPR011761 (ATP-grasp fold), IPR016185 (Pre-ATP-grasp domain)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0006807 (nitrogen compound metabolic process), GO:0008152 (metabolic process), GO:0046872 (metal ion binding)
Niben101Scf06896g00005.1	AT4G34200.1	*-**	D-3-phosphoglycerate dehydrogenase LENGTH=603	IPR006236 (D-3-phosphoglycerate dehydrogenase), IPR015878 (S-adenosyl-L-homocysteine hydrolase, NAD binding domain), IPR016040 (NAD(P)-binding domain), IPR029009 (Allosteric substrate binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1), IPR029753 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site)	GO:0004617 (phosphoglycerate dehydrogenase activity), GO:0006564 (L-serine biosynthetic process), GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01917g11026.1			Unknown protein		
Niben101Scf14542g00016.1	AT2G27600.1	*-*-	AAA-type ATPase family protein LENGTH=435		
Niben101Scf02207g09016.1	sp|Q3SZ16|IAH1_BOVIN	***-	Isoamyl acetate-hydrolyzing esterase 1 homolog	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf05800g02014.1	sp|Q93YV6|2A5I_ARATH	****	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf08972g02007.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf01167g05010.1	sp|Q43125|CRY1_ARATH	***-	Cryptochrome-1	IPR002081 (Cryptochrome/DNA photolyase, class 1)	GO:0003913 (DNA photolyase activity), GO:0006281 (DNA repair)
Niben101Scf12983g01058.1	sp|Q8H0X6|CYT6_ARATH	****	Cysteine proteinase inhibitor 6	IPR000010 (Proteinase inhibitor I25, cystatin), IPR027214 (Cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf00189g06010.1	sp|Q9JZ77|RIBB_NEIMB	****	3,4-dihydroxy-2-butanone 4-phosphate synthase	IPR000422 (3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB), IPR000926 (GTP cyclohydrolase II, RibA), IPR016299 (Riboflavin biosynthesis protein RibBA)	GO:0003935 (GTP cyclohydrolase II activity), GO:0008686 (3,4-dihydroxy-2-butanone-4-phosphate synthase activity), GO:0009231 (riboflavin biosynthetic process)
Niben101Scf05772g00007.1	sp|Q9LVQ0|PME31_ARATH	****	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf05268g00013.1	sp|Q9M353|CHX20_ARATH	*-**	Cation/H(+) antiporter 20	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00176g08002.1	ref|XP_007012255.1|	*-*-	Phosphatase 2A, regulatory subunit PR55, BETA isoform 3 [Theobroma cacao] gb|EOY29874.1| Phosphatase 2A, regulatory subunit PR55, BETA isoform 3 [Theobroma cacao]	IPR024964 (CTLH/CRA C-terminal to LisH motif domain)	
Niben101Scf01235g00019.1	sp|Q65VM6|PFKA_MANSM	*-**	ATP-dependent 6-phosphofructokinase	IPR000023 (Phosphofructokinase domain), IPR012004 (Pyrophosphate-dependent phosphofructokinase TP0108), IPR022953 (Phosphofructokinase)	GO:0003872 (6-phosphofructokinase activity), GO:0005524 (ATP binding), GO:0006002 (fructose 6-phosphate metabolic process), GO:0006096 (glycolytic process)
Niben101Scf14883g03005.1	sp|Q3UX61|NAA11_MOUSE	****	N-alpha-acetyltransferase 11	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf05250g00018.1	sp|F4KDH9|FIPS5_ARATH	*-*-	FIP1		
Niben101Scf08194g00004.1	sp|A3MXQ6|PSB2_PYRCJ	****	Proteasome subunit beta 2	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf02306g01002.1	AT2G43990.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; Has 1419 Blast hits to 494 proteins in 144 species: Archae - 0; Bacteria - 300; Metazoa - 246; Fungi - 102; Plants - 31; Viruses - 2; Other Eukaryotes - 738 (source: NCBI BLink). LENGTH=632		
Niben101Scf02000g00001.1	ref|NP_191672.1|	*-**	alpha-1,4-galacturon [Arabidopsis thaliana] emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gb|AHL38722.1| glycosyltransferase, partial [Arabidopsis thaliana]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf00854g06023.1			Unknown protein		
Niben101Scf10889g01017.1	sp|Q9SCV9|BGAL3_ARATH	***-	Beta-galactosidase 3	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01655g04002.1	sp|P55265|DSRAD_HUMAN	*-**	Double-stranded RNA-specific adenosine deaminase	IPR002466 (Adenosine deaminase/editase), IPR006598 (Lipopolysaccharide-modifying protein)	GO:0003723 (RNA binding), GO:0004000 (adenosine deaminase activity), GO:0006396 (RNA processing)
Niben101Scf01596g11009.1	sp|Q9PL37|GATA_CHLMU	*-*-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf02831g08011.1	ref|XP_007024512.1|	--*-	Kinase superfamily protein isoform 4 [Theobroma cacao] gb|EOY27134.1| Kinase superfamily protein isoform 4 [Theobroma cacao]		
Niben101Scf10575g00023.1	AT1G23300.1	*-*-	MATE efflux family protein LENGTH=515		
Niben101Scf20576g00006.1	sp|Q39234|TGA3_ARATH	--*-	Transcription factor TGA3		
Niben101Scf18200g00001.1			Unknown protein		
Niben101Scf02653g06007.1	AT1G22400.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03493g00018.1	AT1G07570.3	****	Protein kinase superfamily protein LENGTH=424	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10101g00023.1	sp|Q9LIG2|RLK6_ARATH	****	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05901g03008.1	sp|Q9MA55|ACBP4_ARATH	****	Acyl-CoA-binding domain-containing protein 4	IPR014352 (FERM/acyl-CoA-binding protein, 3-helical bundle), IPR015915 (Kelch-type beta propeller)	GO:0000062 (fatty-acyl-CoA binding), GO:0005515 (protein binding)
Niben101Scf02972g05008.1	sp|P27541|HSP70_BRUMA	***-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf02537g21009.1	dbj|BAA21017.1|	****	DNA-binding protein [Daucus carota]	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09745g00017.1	sp|Q8UJ92|COAA_AGRT5	--**	Pantothenate kinase	IPR006083 (Phosphoribulokinase/uridine kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016301 (kinase activity)
Niben101Scf10386g00010.1	sp|Q8R146|APEH_MOUSE	*-*-	Acylamino-acid-releasing enzyme	IPR029058 (Alpha/Beta hydrolase fold)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf01063g10007.1	sp|Q9FMC2|BZP43_ARATH	--*-	Basic leucine zipper 43		
Niben101Scf07895g00011.1	emb|CDY16752.1|	***-	BnaA09g06300D [Brassica napus]		
Niben101Scf04110g03005.1	sp|O14649|KCNK3_HUMAN	*-**	Potassium channel subfamily K member 3	IPR003280 (Two pore domain potassium channel), IPR018247 (EF-Hand 1, calcium-binding site)	GO:0005267 (potassium channel activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf00661g03005.1	AT1G70200.1	*-**	RNA-binding (RRM/RBD/RNP motifs) family protein LENGTH=538	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf11383g02021.1	sp|Q0G9M9|RPOC2_LIRTU	*-**	DNA-directed RNA polymerase subunit beta''	IPR001865 (Ribosomal protein S2), IPR007081 (RNA polymerase Rpb1, domain 5)	GO:0003677 (DNA binding), GO:0003735 (structural constituent of ribosome), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006351 (transcription, DNA-templated), GO:0006412 (translation)
Niben101Scf06397g04009.1	sp|Q68DY9|ZN772_HUMAN	--*-	Zinc finger protein 772	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf05017g05016.1	ref|NP_565917.2|	***-	ARM repeat superfamily protein [Arabidopsis thaliana] RecName: Full=Uncharacterized protein [Arabidopsis thaliana] gb|AEC09748.1| ARM repeat superfamily protein [Arabidopsis thaliana]	IPR016024 (Armadillo-type fold), IPR018870 (Protein of unknown function DUF2454)	GO:0005488 (binding)
Niben101Scf08277g00006.1			Unknown protein		
Niben101Scf03971g02003.1			Unknown protein		
Niben101Scf16145g00006.1	AT4G38900.1	*-*-	Basic-leucine zipper (bZIP) transcription factor family protein LENGTH=553		
Niben101Scf01469g01002.1	sp|O48723|PLP2_ARATH	***-	Patatin-like protein 2	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf01340g03004.1	sp|Q9LY84|GDL76_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00691g04015.1			Unknown protein		
Niben101Scf01423g00004.1	AT1G69060.1	*-*-	Chaperone DnaJ-domain superfamily protein LENGTH=630	IPR001623 (DnaJ domain)	
Niben101Scf02285g01018.1	sp|Q8VH51|RBM39_MOUSE	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf13571g04012.1	emb|CDY03452.1|	*-*-	BnaC01g16300D [Brassica napus]		
Niben101Scf01710g01015.1	AT3G58610.1	****	ketol-acid reductoisomerase LENGTH=591	IPR013023 (Acetohydroxy acid isomeroreductase), IPR016040 (NAD(P)-binding domain)	GO:0004455 (ketol-acid reductoisomerase activity), GO:0008652 (cellular amino acid biosynthetic process), GO:0009082 (branched-chain amino acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08651g00012.1	sp|P61286|PABP1_BOVIN	*-**	Polyadenylate-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00219g02011.1	AT1G47410.1	*-*-	unknown protein; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=189		
Niben101Scf04018g07007.1	gb|KEH37527.1|	***-	EEIG1/EHBP1 protein amino-terminal domain protein [Medicago truncatula]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf02605g09001.1	AT1G65790.1	*-**	receptor kinase 1 LENGTH=843	IPR011009 (Protein kinase-like domain), IPR021820 (S-locus receptor kinase, C-terminal)	GO:0004674 (protein serine/threonine kinase activity), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00821g12023.1	sp|P93003|TFL1_ARATH	***-	Protein TERMINAL FLOWER 1	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf04633g00010.1	sp|P06634|DED1_YEAST	****	ATP-dependent RNA helicase DED1	IPR001202 (WW domain), IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf00337g01009.1	sp|Q68DC2|ANKS6_HUMAN	--*-	Ankyrin repeat and SAM domain-containing protein 6	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf00261g02004.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03278g01001.1	sp|E7F6F9|KLHL3_DANRE	*-*-	Kelch-like protein 3	IPR001810 (F-box domain), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf02807g11013.1	ref|XP_007014955.1|	***-	Far1-related sequence 4 isoform 3 [Theobroma cacao] gb|EOY32574.1| Far1-related sequence 4 isoform 3 [Theobroma cacao]	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type), IPR018289 (MULE transposase domain)	GO:0008270 (zinc ion binding)
Niben101Scf05776g01031.1			Unknown protein		
Niben101Scf08546g00001.1	sp|Q40479|ERF2_TOBAC	****	Ethylene-responsive transcription factor 2	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01237g07019.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12083g00006.1	gb|EMS47823.1|	*-**	Translation initiation factor IF-3 [Triticum urartu]	IPR001288 (Translation initiation factor 3)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf03546g01012.1	sp|O24037|NLTP1_SOLPN	****	Non-specific lipid-transfer protein 1	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf06295g04023.1	sp|Q15782|CH3L2_HUMAN	****	Chitinase-3-like protein 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004568 (chitinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process)
Niben101Scf02145g07013.1	AT1G11925.1	***-	Stigma-specific Stig1 family protein LENGTH=140	IPR006969 (Stigma-specific protein Stig1)	
Niben101Scf01500g00004.1	AT2G20580.1	*-*-	26S proteasome regulatory subunit S2 1A LENGTH=891		
Niben101Scf04196g03018.1	sp|Q01UN3|NUON2_SOLUE	*-*-	NADH-quinone oxidoreductase subunit N 2	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf01352g02014.1	emb|CDS29377.1|	-**-	reverse transcriptase [Hymenolepis microstoma]		
Niben101Scf06461g03009.1	sp|A2X0Q6|SPL3_ORYSI	*-**	Squamosa promoter-binding-like protein 3	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf00317g11005.1	ref|NP_001054478.1|	***-	product [Oryza sativa Japonica Group]	IPR027854 (Protein of unknown function DUF4535)	
Niben101Scf16007g00011.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00247g05012.1	ref|WP_026798256.1|	***-	MULTISPECIES: hypothetical protein [Planktothrix]		
Niben101Scf11447g04001.1	AT5G12040.1	*-*-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein LENGTH=369	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf18730g00016.1	sp|P47735|RLK5_ARATH	--*-	Receptor-like protein kinase 5		
Niben101Scf18106g02001.1	gb|AES66657.2|	*-*-	P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]	IPR025753 (AAA-type ATPase, N-terminal domain)	
Niben101Scf04653g07007.1	pdb|1UHN|A	*-**	Chain A, The Crystal Structure Of The Calcium Binding Protein Atcbl2 From Arabidopsis Thaliana	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01560g01005.1	ref|NP_001053188.1|	***-	product [Oryza sativa Japonica Group]	IPR006946 (Protein of unknown function DUF642), IPR008979 (Galactose-binding domain-like)	
Niben101Scf15391g02002.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00167g04019.1	sp|A2C6X1|ATPL_PROM3	****	ATP synthase subunit c	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf00860g01015.1	tpg|DAA53291.1|	*-*-	TPA: putative RING zinc finger domain superfamily protein [Zea mays]		
Niben101Scf09082g00014.1	AT5G05830.1	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=204	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf04289g01012.1	AT1G23890.2	***-	NHL domain-containing protein LENGTH=400	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0005515 (protein binding)
Niben101Scf01413g02004.1	sp|Q9ST62|NDB1_SOLTU	****	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00369g19019.1	AT1G56230.1	***-	Protein of unknown function (DUF1399) LENGTH=752	IPR009836 (Protein of unknown function DUF1399)	
Niben101Scf14669g00004.1	sp|Q01971|RAB2A_RABIT	--*-	Ras-related protein Rab-2A	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf08690g02019.1	sp|Q86MW9|SINA_SCHMA	****	E3 ubiquitin-protein ligase sina	IPR004162 (E3 ubiquitin-protein ligase SINA like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf10785g01004.1	AT1G44960.1	*-*-	SNARE associated Golgi protein family LENGTH=261		
Niben101Scf07257g00014.1	ref|XP_007041693.1|	--*-	SAUR-like auxin-responsive protein family, putative [Theobroma cacao] gb|EOX97524.1| SAUR-like auxin-responsive protein family, putative [Theobroma cacao]		
Niben101Scf03018g10008.1	ref|XP_002517792.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF44599.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06127g01013.1	sp|Q8RWZ7|VHAA1_ARATH	****	V-type proton ATPase subunit a1	IPR002490 (V-type  ATPase, V0 complex, 116kDa subunit family)	GO:0000220 (vacuolar proton-transporting V-type ATPase, V0 domain), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf01545g00008.1	sp|Q91V37|VATO_MOUSE	****	V-type proton ATPase 21 kDa proteolipid subunit	IPR000245 (V-ATPase proteolipid subunit), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf04430g03018.1	sp|O24160|TGA21_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06151g02014.1	AT1G67720.1	***-	Leucine-rich repeat protein kinase family protein LENGTH=929	IPR001611 (Leucine-rich repeat), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0005515 (protein binding)
Niben101Scf01239g02002.1	AT5G54160.1	****	O-methyltransferase 1 LENGTH=363	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf03597g00015.1	sp|D3ZTQ1|SFSWA_RAT	*-*-	Splicing factor, suppressor of white-apricot homolog	IPR000061 (SWAP/Surp), IPR019147 (Suppressor of white apricot N-terminal domain)	GO:0003723 (RNA binding), GO:0006396 (RNA processing)
Niben101Scf01037g01013.1	ref|WP_019540988.1|	*-*-	diphosphate--fructose-6-phosphate 1-phosphotransferase [Proteiniphilum acetatigenes]	IPR000023 (Phosphofructokinase domain)	GO:0003872 (6-phosphofructokinase activity), GO:0006096 (glycolytic process)
Niben101Scf06700g00002.1	emb|CDY69949.1|	*-*-	BnaA01g35280D [Brassica napus]	IPR019446 (Domain of unknown function DUF2431)	
Niben101Ctg15284g00001.1	sp|Q9FLW2|FRO5_ARATH	****	Ferric reduction oxidase 5	IPR000778 (Cytochrome b245, heavy chain), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01269g01009.1	sp|Q84W80|FBL42_ARATH	*-*-	F-box/LRR-repeat protein		
Niben101Scf05486g01009.1	sp|C0HBT3|RN146_SALSA	--*-	E3 ubiquitin-protein ligase rnf146	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00911g02019.1	AT2G38910.1	*-**	calcium-dependent protein kinase 20 LENGTH=583	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00215g02002.1	gb|ABA91336.1|	--*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf04457g04018.1	AT3G18490.1	***-	Eukaryotic aspartyl protease family protein LENGTH=500	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00270g15011.1	AT3G21760.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=485	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04829g00006.1	ref|YP_006291826.1|	*-*-	orf42 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81180.1| orf42 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf01077g01002.1	sp|Q9LZB2|GDL74_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf09296g00007.1	sp|O49564|CRK27_ARATH	*-**	Cysteine-rich receptor-like protein kinase 27	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02953g00005.1	gb|AAD15429.1|	***-	En/Spm-like transposon protein [Arabidopsis thaliana]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf01035g01012.1	emb|CDY48085.1|	*-*-	BnaC06g02490D [Brassica napus]		
Niben101Scf20614g00016.1	AT1G78590.1	****	NAD(H) kinase 3 LENGTH=317	IPR002504 (Inorganic polyphosphate/ATP-NAD kinase)	GO:0003951 (NAD+ kinase activity), GO:0006741 (NADP biosynthetic process), GO:0008152 (metabolic process), GO:0019674 (NAD metabolic process)
Niben101Scf00917g03010.1	gb|ACG26510.1|	***-	FIP1 [Zea mays]	IPR004182 (GRAM domain)	
Niben101Scf00381g09008.1	ref|XP_002521725.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF40712.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05588g05006.1	sp|Q089P5|RS17_SHEFN	--*-	30S ribosomal protein S17	IPR000266 (Ribosomal protein S17), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09459g02008.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00288g17017.1	sp|Q642R9|RB3GP_XENLA	*-**	Rab3 GTPase-activating protein catalytic subunit	IPR026147 (Rab3 GTPase-activating protein catalytic subunit)	GO:0005097 (Rab GTPase activator activity)
Niben101Scf03278g07012.1	AT4G18700.1	****	CBL-interacting protein kinase 12 LENGTH=489	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00495g02016.1	sp|Q7EXZ2|SPL14_ORYSJ	*-**	Squamosa promoter-binding-like protein 14	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Ctg15404g00003.1	sp|Q9FZG4|HXKL1_ARATH	***-	Hexokinase-like 1 protein	IPR001312 (Hexokinase)	GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00751g06026.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07314g00006.1	AT2G33847.1	***-	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=93		
Niben101Scf22924g00006.1	ref|XP_007012646.1|	***-	OBP3-responsive gene 4 isoform 5 [Theobroma cacao] gb|EOY30265.1| OBP3-responsive gene 4 isoform 5 [Theobroma cacao]		
Niben101Scf01318g00006.1	ref|NP_001056109.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf05697g00005.1	sp|Q9BU70|NAP1_HUMAN	*-*-	Nef-associated protein 1	IPR001378 (Uncharacterised domain UPF0066), IPR023370 (TsaA-like domain)	
Niben101Scf09640g01007.1	sp|Q9CAR3|KINGL_ARATH	--*-	SNF1-related protein kinase regulatory subunit gamma-1-like	IPR000644 (CBS domain)	
Niben101Scf06318g00005.1	sp|P70168|IMB1_MOUSE	***-	Importin subunit beta-1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf04039g00004.1	sp|O95684|FR1OP_HUMAN	*-*-	FGFR1 oncogene partner	IPR006594 (LisH dimerisation motif)	GO:0005515 (protein binding)
Niben101Scf27159g01007.1	sp|P05425|COPB_ENTHA	--*-	Copper-exporting P-type ATPase B		
Niben101Scf01894g03006.1	dbj|BAD35335.1|	*-*-	loricrin-like [Oryza sativa Japonica Group]		
Niben101Scf00837g10004.1	ref|XP_002534701.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF27687.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01226g02013.1	ref|XP_002533440.1|	****	GTP binding protein, putative [Ricinus communis] gb|EEF28947.1| GTP binding protein, putative [Ricinus communis]	IPR006073 (GTP binding domain), IPR023179 (GTP-binding protein, orthogonal bundle domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf05084g00008.1	sp|Q86AV5|MCFX_DICDI	***-	Mitochondrial substrate carrier family protein X	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf03456g00018.1	sp|Q6NM73|CRR3_ARATH	***-	Cysteine-rich repeat secretory protein 3	IPR002902 (Gnk2-homologous domain)	
Niben101Scf12211g02007.1	AT1G80520.1	*-*-	Sterile alpha motif (SAM) domain-containing protein LENGTH=192	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf01481g02006.1	sp|Q84K00|NAC78_ARATH	***-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04650g01008.1	sp|Q04739|GAL83_YEAST	*-*-	SNF1 protein kinase subunit beta-3	IPR006828 (Association with the SNF1 complex (ASC) domain), IPR014756 (Immunoglobulin E-set), IPR030070 (SNF1-related protein kinase regulatory subunit beta-2)	GO:0005515 (protein binding)
Niben101Scf01895g00021.1			Unknown protein		
Niben101Scf01511g02019.1	sp|Q93VJ4|BEE2_ARATH	--*-	Transcription factor BEE 2		
Niben101Scf03254g06004.1	AT3G27540.1	****	beta-1,4-N-acetylglucosaminyltransferase family protein LENGTH=390	IPR006813 (Glycosyl transferase, family 17)	GO:0003830 (beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity), GO:0006487 (protein N-linked glycosylation), GO:0016020 (membrane)
Niben101Scf15979g02001.1	sp|O48652|UVR3_ARATH	****	(6-4)DNA photolyase	IPR005101 (DNA photolyase, FAD-binding/Cryptochrome, C-terminal), IPR006050 (DNA photolyase, N-terminal)	GO:0003913 (DNA photolyase activity), GO:0006281 (DNA repair)
Niben101Scf13621g01003.1	gb|KEH24630.1|	***-	DUF1442 family protein [Medicago truncatula]	IPR009902 (Protein of unknown function DUF1442), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00083g04029.1	ref|NP_001068433.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf00837g05004.1			Unknown protein		
Niben101Scf10058g00015.1	sp|P35336|PGLR_ACTDE	*-**	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04494g00020.1	sp|Q9LV40|ROGF8_ARATH	****	Rho guanine nucleotide exchange factor 8	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf05035g00001.1	dbj|BAB70678.1|	*-*-	subtilisin-like serine protease [Arabidopsis thaliana]		
Niben101Scf11944g00007.1	ref|XP_003612573.1|	***-	Ankyrin repeat domain-containing protein [Medicago truncatula]	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf00077g00010.1	sp|O22199|P4KG1_ARATH	***-	Phosphatidylinositol 4-kinase gamma 1	IPR000403 (Phosphatidylinositol 3-/4-kinase, catalytic domain)	GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf01701g03007.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf27164g00003.1	sp|Q8CFD1|RBM45_RAT	--**	RNA-binding protein 45	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00260g00007.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf01735g02022.1	AT3G14270.1	*-*-	phosphatidylinositol-4-phosphate 5-kinase family protein LENGTH=1791	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process)
Niben101Scf14955g00012.1	sp|A7GU98|GLGA_BACCN	*-**	Glycogen synthase	IPR005085 (Carbohydrate binding module family 25), IPR011835 (Glycogen/starch synthase, ADP-glucose type)	GO:0009011 (starch synthase activity), GO:0009058 (biosynthetic process), GO:0009250 (glucan biosynthetic process), GO:2001070 (starch binding)
Niben101Scf00318g04007.1	sp|Q54GB2|CTSL2_DICDI	*-**	CTD small phosphatase-like protein 2	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding), GO:0016791 (phosphatase activity)
Niben101Scf02569g02012.1	AT4G22740.1	*-*-	glycine-rich protein LENGTH=356		
Niben101Scf06162g00003.1	sp|Q2MIC5|YCF2_SOLBU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf00073g04002.1	AT2G26150.1	*-**	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf15885g00035.1	ref|XP_002536610.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF25773.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09004g01004.1	sp|Q8W207|CSN2_ARATH	***-	COP9 signalosome complex subunit 2	IPR000717 (Proteasome component (PCI) domain), IPR011990 (Tetratricopeptide-like helical domain), IPR013143 (PCI/PINT associated module)	GO:0005515 (protein binding)
Niben101Scf03983g00042.1	AT5G57580.1	***-	Calmodulin-binding protein LENGTH=647	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf05962g04010.1	sp|P11432|ELI_PEA	***-	Early light-induced protein, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf01371g07015.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf12205g02017.1	AT1G78580.1	*-**	trehalose-6-phosphate synthase LENGTH=942	IPR003337 (Trehalose-phosphatase), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process)
Niben101Scf04958g00015.1	sp|Q9M9E1|AB40G_ARATH	*-*-	ABC transporter G family member 40	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf01025g13004.1	sp|Q9FJD5|LAC17_ARATH	*-*-	Laccase-17	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03082g01001.1	sp|Q3V096|ANR42_MOUSE	*-*-	Ankyrin repeat domain-containing protein 42	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf18904g00005.1	sp|Q68FK8|DHX9_XENLA	*-**	ATP-dependent RNA helicase A-like protein	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf08411g00026.1	sp|Q9C519|WRKY6_ARATH	*-**	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00177g11012.1	sp|Q5B4C9|ATG26_EMENI	*-*-	Sterol 3-beta-glucosyltransferase	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase), IPR004276 (Glycosyltransferase family 28, N-terminal domain)	GO:0005975 (carbohydrate metabolic process), GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups), GO:0030259 (lipid glycosylation)
Niben101Scf00074g01003.1	AT5G01920.1	****	Protein kinase superfamily protein LENGTH=495	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00597g08026.1			Unknown protein		
Niben101Scf07767g02011.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05692g00008.1	sp|P77348|MPPA_ECOLI	--*-	Periplasmic murein peptide-binding protein		
Niben101Scf04878g00012.1	gb|AES70864.2|	--*-	zinc finger CCCH domain protein [Medicago truncatula]		
Niben101Scf06654g00004.1	gb|KEH39046.1|	***-	wound-responsive family protein [Medicago truncatula]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf09112g03009.1	sp|Q5N8Z0|DRB1_ORYSJ	--*-	Double-stranded RNA-binding protein 1		
Niben101Scf03937g02019.1	sp|P50699|TLPH_ARATH	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf11852g00011.1	sp|A3MS27|RFCL_PYRCJ	*-*-	Replication factor C large subunit	IPR004582 (Checkpoint protein Rad17/Rad24), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0007049 (cell cycle)
Niben101Scf02764g05010.1	ref|XP_007008941.1|	***-	Transducin family protein / WD-40 repeat family protein, putative isoform 1 [Theobroma cacao] gb|EOY17751.1| Transducin family protein / WD-40 repeat family protein, putative isoform 1 [Theobroma cacao]	IPR001388 (Synaptobrevin), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf12293g02009.1			Unknown protein	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf00526g00018.1	sp|Q9FFI5|NAC86_ARATH	*-*-	NAC domain-containing protein 86	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01970g01025.1	sp|A8FNQ9|HIS1_CAMJ8	****	ATP phosphoribosyltransferase	IPR001348 (ATP phosphoribosyltransferase HisG)	GO:0000105 (histidine biosynthetic process), GO:0000287 (magnesium ion binding), GO:0003879 (ATP phosphoribosyltransferase activity), GO:0005737 (cytoplasm)
Niben101Scf05955g00024.1	AT3G54510.2	***-	Early-responsive to dehydration stress protein (ERD4) LENGTH=712	IPR003864 (Domain of unknown function DUF221)	GO:0016020 (membrane)
Niben101Scf09513g00009.1	sp|Q7ZVC4|CHM4B_DANRE	*-*-	Charged multivesicular body protein 4b	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf05955g03025.1	sp|Q60936|ADCK3_MOUSE	***-	Chaperone activity of bc1 complex-like, mitochondrial	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12745g00004.1	gb|ADQ28399.1|	*-*-	transport membrane protein, partial (mitochondrion) [Butomus umbellatus]		
Niben101Scf08142g00002.1	sp|A8FRU0|MDH_SHESH	****	Malate dehydrogenase	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf01390g01001.1	AT3G44510.2	***-	alpha/beta-Hydrolases superfamily protein LENGTH=325	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07459g00030.1	sp|Q2RBF0|CIPKF_ORYSJ	*-**	CBL-interacting protein kinase 15	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02832g02013.1	gb|ADM75397.1|	***-	late embryogenesis abundant-like protein, partial [Picea sitchensis]	IPR009646 (Root cap)	
Niben101Scf04038g03004.1	AT4G16580.1	*-*-	Protein phosphatase 2C family protein LENGTH=467	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf04993g01004.1	sp|Q94CD8|E134_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 4	IPR012946 (X8 domain)	
Niben101Scf01971g02003.1	gb|KEH25542.1|	-**-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf01773g07010.1	gb|KEH43128.1|	*-*-	isopenicillin N epimerase-like protein [Medicago truncatula]		
Niben101Scf02790g04004.1	emb|CDY39086.1|	*-*-	BnaA01g29700D [Brassica napus]		
Niben101Scf00021g00005.1	AT1G26740.1	***-	Ribosomal L32p protein family LENGTH=134		
Niben101Scf01848g02010.1	sp|Q6Q9I2|MAD15_ORYSJ	*-*-	MADS-box transcription factor 15	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01143g04003.1	sp|P0C5B0|MADS7_ORYSI	****	MADS-box transcription factor 7	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf00753g03019.1	ref|NP_001148961.1|	***-	my isoform 6 [Zea mays]		
Niben101Scf11491g01022.1	gb|ABY59208.1|	***-	[Arabidopsis thaliana]		
Niben101Scf00177g06008.1	emb|CDY71064.1|	***-	BnaAnng35970D [Brassica napus]		
Niben101Scf06517g02026.1	AT4G24500.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=319		
Niben101Scf13833g01009.1	sp|Q38865|EXPA6_ARATH	*-*-	Expansin-A6	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf02605g01001.1	emb|CDX25118.1|	***-	conserved hypothetical protein [Mesorhizobium plurifarium]	IPR010634 (Protein of unknown function DUF1223), IPR012336 (Thioredoxin-like fold)	
Niben101Scf02608g03023.1			Unknown protein		
Niben101Scf31195g00005.1	ref|XP_007027957.1|	*-*-	Embryo sac development arrest 12, putative [Theobroma cacao] gb|EOY08459.1| Embryo sac development arrest 12, putative [Theobroma cacao]		
Niben101Scf03341g03020.1	sp|Q99TL8|RELA_STAAN	*-*-	GTP pyrophosphokinase	IPR007685 (RelA/SpoT)	GO:0015969 (guanosine tetraphosphate metabolic process)
Niben101Scf07638g01010.1	AT2G45180.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=134	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf03817g07004.1	sp|A4J650|NUON_DESRM	*-*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf01903g00003.1	sp|Q05462|RL27_PEA	--*-	60S ribosomal protein L27	IPR001141 (Ribosomal protein L27e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08737g00001.1	AT3G22960.1	****	Pyruvate kinase family protein LENGTH=596	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf24398g00006.1	sp|Q9FFG8|PP417_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05486g01006.1	sp|Q8LEJ6|FLA11_ARATH	*-*-	Fasciclin-like arabinogalactan protein 11	IPR000782 (FAS1 domain)	
Niben101Scf00177g02004.1	sp|O23181|PLP3_ARATH	*-*-	Patatin-like protein 3		
Niben101Scf00278g11010.1			Unknown protein	IPR016197 (Chromo domain-like)	
Niben101Scf02821g07008.1	sp|Q84Y01|ITPK1_MAIZE	*-**	Inositol-tetrakisphosphate 1-kinase 1	IPR008656 (Inositol-tetrakisphosphate 1-kinase)	GO:0000287 (magnesium ion binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0032957 (inositol trisphosphate metabolic process), GO:0047325 (inositol tetrakisphosphate 1-kinase activity), GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity), GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
Niben101Scf00703g04005.1	sp|Q9CQY5|MAGT1_MOUSE	***-	Magnesium transporter protein 1	IPR021149 (Oligosaccharyl transferase complex, subunit OST3/OST6)	
Niben101Scf01232g02002.1	sp|O82352|RTNLE_ARATH	***-	Reticulon-like protein B5	IPR003388 (Reticulon)	
Niben101Scf06113g00020.1	ref|WP_017253487.1|	***-	(2R)-phospho-3-sulfolactate synthase [Coxiella burnetii]	IPR003830 ((2R)-phospho-3-sulpholactate synthase, ComA), IPR013785 (Aldolase-type TIM barrel), IPR015500 (Peptidase S8, subtilisin-related)	GO:0003824 (catalytic activity), GO:0019295 (coenzyme M biosynthetic process)
Niben101Scf06267g00003.1	emb|CDY45222.1|	***-	BnaA07g12680D [Brassica napus]		
Niben101Scf01514g04022.1	sp|Q9FLP5|SUMO3_ARATH	***-	Small ubiquitin-related modifier 3	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf20887g00021.1	AT3G10915.5	***-	Reticulon family protein LENGTH=249	IPR003388 (Reticulon)	
Niben101Scf00466g01018.1	AT2G21300.1	*-**	ATP binding microtubule motor family protein LENGTH=862	IPR001752 (Kinesin motor domain), IPR021881 (Protein of unknown function DUF3490), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf13742g00002.1	sp|Q9M0N8|MZT1B_ARATH	*-*-	Mitotic-spindle organizing protein 1B	IPR022214 (Protein of unknown function DUF3743)	
Niben101Scf00438g02022.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf05249g09009.1	AT3G44510.2	***-	alpha/beta-Hydrolases superfamily protein LENGTH=325	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02899g04003.1	gb|ABY88541.1|	***-	NHL1, partial [Arabidopsis thaliana]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf10309g01006.1	AT1G50320.1	*-*-	thioredoxin X LENGTH=182	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf18080g02002.1	sp|Q7ZWF4|RN145_DANRE	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00428g10003.1	sp|P13436|OLEO1_MAIZE	***-	Oleosin Zm-I	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf00160g10022.1	AT3G23550.1	*-*-	MATE efflux family protein LENGTH=469	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf05084g00007.1	sp|Q8VE10|NAA40_MOUSE	****	N-alpha-acetyltransferase 40	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf04963g01001.1	AT2G02450.2	*-*-	NAC domain containing protein 35 LENGTH=414	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00457g09009.1	gb|AES67577.2|	--*-	myb transcription factor [Medicago truncatula]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf04675g00003.1			Unknown protein		
Niben101Scf01765g02005.1	emb|CAA73365.1|	--*-	Krm protein [Lotus japonicus]		
Niben101Scf04905g00002.1	sp|Q6DSS2|Y2186_ARATH	--*-	B3 domain-containing protein	IPR005508 (B3 domain-containing protein), IPR015300 (DNA-binding pseudobarrel domain)	
Niben101Scf07428g02022.1	AT3G25160.1	****	ER lumen protein retaining receptor family protein LENGTH=272	IPR000133 (ER lumen protein retaining receptor)	GO:0006621 (protein retention in ER lumen), GO:0016021 (integral component of membrane), GO:0046923 (ER retention sequence binding)
Niben101Scf02133g06009.1	sp|Q8CIB6|TM230_MOUSE	***-	Transmembrane protein 230	IPR008590 (Protein of unknown function DUF872, transmembrane)	
Niben101Scf08843g01007.1	ref|XP_002533162.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29221.1| conserved hypothetical protein [Ricinus communis]	IPR007513 (Uncharacterised protein family SERF)	
Niben101Scf00347g00011.1	sp|Q9S758|SPL5_ARATH	*-**	Squamosa promoter-binding-like protein 5	IPR017238 (Squamosa promoter-binding protein)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf02513g01015.1			Unknown protein		
Niben101Scf03515g00017.1	sp|P15688.2|NU2M_BETVU	*-*-	RecName: Full=NADH-ubiquinone oxidoreductase chain 2; AltName: Full=NADH dehydrogenase subunit 2 (mitochondrion) [Beta vulgaris] emb|CAA34728.1| NADH:ubiquinone reductase subunit 2 [Beta vulgaris subsp. vulgaris]		
Niben101Scf06295g03005.1	sp|Q8J1G4|KIP1_ASHGO	--*-	Kinesin-like protein KIP1		
Niben101Scf02160g06051.1			Unknown protein		
Niben101Scf03354g00001.1	sp|Q67ZM4|ADF7_ARATH	****	Actin-depolymerizing factor 7	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf00486g00002.1	sp|Q8RY18|Y5436_ARATH	*-*-	MATH domain-containing protein	IPR008974 (TRAF-like)	GO:0005515 (protein binding)
Niben101Scf03510g02005.1	AT4G39790.1	***-	Protein of unknown function (DUF630 and DUF632) LENGTH=657	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf03460g06004.1	AT5G11090.1	***-	serine-rich protein-related LENGTH=217		
Niben101Scf04060g03009.1	sp|Q9H501|ESF1_HUMAN	--*-	ESF1 homolog	IPR012580 (NUC153)	GO:0005634 (nucleus)
Niben101Scf22196g00002.1	ref|XP_003599576.1|	*-*-	Ycf68 protein [Medicago truncatula]		
Niben101Scf09417g02001.1	gb|AAA34063.1|	***-	cysteine-rich extensin-like protein [Nicotiana tabacum]		
Niben101Scf01415g00010.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06371g00007.1	gb|AHD24918.1|	*-*-	CER1 [Brassica napus]	IPR021940 (Uncharacterised domain Wax2, C-terminal)	
Niben101Scf02425g02013.1	sp|Q8GZ92|BRXL4_ARATH	***-	Protein Brevis radix-like 4	IPR013591 (Brevis radix (BRX) domain), IPR027988 (Transcription factor  BREVIS RADIX, N-terminal domain)	
Niben101Scf04190g01002.1	sp|A1U1V3|SYE_MARHV	--*-	Glutamate--tRNA ligase		
Niben101Scf04660g00006.1	AT5G66600.4	*-*-	Protein of unknown function, DUF547 LENGTH=629	IPR006869 (Domain of unknown function DUF547)	
Niben101Scf12051g00008.1	AT1G72510.1	*-*-	Protein of unknown function (DUF1677) LENGTH=165	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf09659g01016.1	AT1G65430.1	*-*-	IBR domain-containing protein LENGTH=567	IPR002867 (Zinc finger, C6HC-type)	GO:0008270 (zinc ion binding)
Niben101Scf01380g03018.1	sp|P93564|GPA1_SOLTU	*-**	Guanine nucleotide-binding protein alpha-1 subunit	IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0004871 (signal transducer activity), GO:0005525 (GTP binding), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007186 (G-protein coupled receptor signaling pathway), GO:0019001 (guanyl nucleotide binding), GO:0031683 (G-protein beta/gamma-subunit complex binding)
Niben101Scf04124g05022.1	sp|Q5PP62|SPX3_ARATH	***-	SPX domain-containing protein 3	IPR004331 (SPX, N-terminal)	
Niben101Scf00675g04004.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07166g01013.1	sp|P92998|GL11_ARATH	*-*-	Germin-like protein subfamily 1 member 1	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf03223g00003.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01782g07006.1	sp|Q9M0X5|CRK25_ARATH	--*-	Cysteine-rich receptor-like protein kinase 25	IPR002902 (Gnk2-homologous domain)	
Niben101Scf04054g02002.1	ref|XP_007018147.1|	*-*-	Folic acid and derivative biosynthetic process [Theobroma cacao] gb|EOY15372.1| Folic acid and derivative biosynthetic process [Theobroma cacao]	IPR005645 (Serine hydrolase FSH)	
Niben101Scf05811g06010.1	sp|Q9HSF6|RNH_HALSA	--**	Ribonuclease HI	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf00193g02003.1			Unknown protein		
Niben101Scf02575g02010.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01267g13006.1	sp|Q7ZZN9|CRVP_PROJR	--*-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf07289g00002.1	sp|Q9Y5U8|MPC1_HUMAN	****	Mitochondrial pyruvate carrier 1	IPR005336 (Mitochondrial pyruvate carrier)	GO:0005743 (mitochondrial inner membrane), GO:0006850 (mitochondrial pyruvate transport)
Niben101Scf03200g01008.1	AT5G42210.1	*-*-	Major facilitator superfamily protein LENGTH=282	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf01576g00010.1	sp|Q9HN64|IF1A1_HALSA	--**	Translation initiation factor 1A 1	IPR001253 (Translation initiation factor 1A (eIF-1A))	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf01300g06002.1	gb|ABF94077.1|	--*-	expressed protein [Oryza sativa Japonica Group]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf03365g05002.1			Unknown protein		
Niben101Scf07019g02005.1	ref|XP_007025095.1|	***-	Translation initiation factor eIF-2B subunit delta, putative isoform 1 [Theobroma cacao] gb|EOY27717.1| Translation initiation factor eIF-2B subunit delta, putative isoform 1 [Theobroma cacao]	IPR002344 (Lupus La protein), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0006396 (RNA processing), GO:0030529 (ribonucleoprotein complex)
Niben101Scf04782g02002.1	AT3G03430.1	****	Calcium-binding EF-hand family protein LENGTH=83	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf04044g07023.1	AT5G05680.1	***-	nuclear pore complex protein-related LENGTH=810	IPR017986 (WD40-repeat-containing domain), IPR019321 (Nucleoporin Nup88)	GO:0005515 (protein binding)
Niben101Scf09592g00005.1			Unknown protein		
Niben101Scf01717g00008.1			Unknown protein		
Niben101Scf01749g04004.1	sp|A2YEZ6|SAP8_ORYSI	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	IPR000058 (Zinc finger, AN1-type), IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf04422g00011.1	sp|Q810K3|SGPP2_MOUSE	*-*-	Sphingosine-1-phosphate phosphatase 2	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Scf11305g01007.1	AT2G41410.1	****	Calcium-binding EF-hand family protein LENGTH=216	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02373g05009.1	sp|Q9LDW3|PUM11_ARATH	*-*-	Pumilio homolog 11	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf10228g00002.1	sp|Q9SF40|RL4A_ARATH	***-	60S ribosomal protein L4-1	IPR002136 (Ribosomal protein L4/L1e), IPR023574 (Ribosomal protein L4 domain), IPR025755 (60S ribosomal protein L4, C-terminal domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04724g01001.1	ref|XP_002521307.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF41081.1| conserved hypothetical protein [Ricinus communis]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf03853g03014.1	sp|Q9LVA0|BAG7_ARATH	*-*-	BAG family molecular chaperone regulator 7	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf00530g08004.1	ref|XP_002513591.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF48994.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07778g03001.1	ref|XP_002528742.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF33654.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05238g01012.1	sp|B3EWI4|PST2_PETHY	***-	Photosystem II 5 kDa protein, chloroplastic		
Niben101Scf12999g00002.1	sp|Q688M5|CHI9_ORYSJ	****	Chitinase 9	IPR000726 (Glycoside hydrolase, family 19, catalytic), IPR001002 (Chitin-binding, type 1), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0006032 (chitin catabolic process), GO:0008061 (chitin binding), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf03038g01009.1	sp|P82787|DEF19_ARATH	***-	Defensin-like protein 19	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf06176g03001.1	AT1G35830.1	*-*-	VQ motif-containing protein LENGTH=302	IPR008889 (VQ)	
Niben101Scf08195g07026.1	sp|Q9C7N5|GDL14_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf10314g04010.1	gb|AES82375.2|	*-*-	meiotically up-regulated protein 71-like protein [Medicago truncatula]	IPR013813 (Endoribonuclease L-PSP/chorismate mutase-like)	
Niben101Scf00820g00005.1	AT1G65295.1	***-	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=115		
Niben101Scf03309g06003.1	sp|Q9C7G1|PUB45_ARATH	*-*-	U-box domain-containing protein 45	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf11120g00009.1	AT1G55915.1	****	zinc ion binding LENGTH=404	IPR001876 (Zinc finger, RanBP2-type), IPR013536 (WLM)	GO:0008270 (zinc ion binding)
Niben101Scf07350g00001.1	sp|P05455|LA_HUMAN	*-*-	Lupus La protein	IPR006607 (Protein of unknown function DM15), IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf07793g01013.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf07531g00001.1	sp|Q9SWE5|HAL3A_ARATH	*-*-	Phosphopantothenoylcysteine decarboxylase	IPR003382 (Flavoprotein)	GO:0003824 (catalytic activity)
Niben101Scf05102g08003.1	sp|Q8IWX8|CHERP_HUMAN	*-*-	Calcium homeostasis endoplasmic reticulum protein	IPR000061 (SWAP/Surp)	GO:0003723 (RNA binding), GO:0006396 (RNA processing)
Niben101Scf10732g01017.1	ref|YP_006291827.1|	*-*-	orf43 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81181.1| orf43 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf05458g00010.1	sp|Q9QZH7|FXL20_RAT	--*-	F-box/LRR-repeat protein 20	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf02407g11002.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf04232g00006.1	sp|C8V8H4|DED1_EMENI	*-**	ATP-dependent RNA helicase ded1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf03376g03004.1	sp|A6MFK9|CRVP_DEMVE	*-*-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf02439g00019.1	AT1G27060.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=386	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf02929g01021.1	gb|ADV15959.1|	*-*-	maturase, partial (mitochondrion) [Montinia caryophyllacea]		
Niben101Scf09325g05001.1	sp|Q9SI37|WRKY1_ARATH	--**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04700g07005.1			Unknown protein		
Niben101Scf00215g07001.1	AT2G44260.2	***-	Plant protein of unknown function (DUF946) LENGTH=583	IPR009291 (Vacuolar protein sorting-associated protein 62)	
Niben101Scf00279g01012.1			Unknown protein		
Niben101Scf32136g00002.1	sp|Q80YV3|TRRAP_MOUSE	--*-	Transformation/transcription domain-associated protein	IPR014009 (PIK-related kinase)	GO:0005515 (protein binding)
Niben101Scf10865g00011.1	sp|P18290|PSBA_BRANA	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf02840g00003.1	AT1G26760.1	*-*-	SET domain protein 35 LENGTH=545		
Niben101Scf06758g00014.1			Unknown protein		
Niben101Scf00854g07022.1	ref|XP_003610227.1|	*-*-	Ycf68 [Medicago truncatula]		
Niben101Scf03170g01020.1	sp|Q8BXQ2|PIGT_MOUSE	****	GPI transamidase component PIG-T	IPR007245 (GPI transamidase component PIG-T)	GO:0016255 (attachment of GPI anchor to protein), GO:0042765 (GPI-anchor transamidase complex)
Niben101Scf03280g01022.1	ref|WP_026085918.1|	****	uroporphyrinogen III synthase [Fischerella muscicola]	IPR003754 (Tetrapyrrole biosynthesis, uroporphyrinogen III synthase)	GO:0004852 (uroporphyrinogen-III synthase activity), GO:0033014 (tetrapyrrole biosynthetic process)
Niben101Scf04708g00002.1	AT5G26310.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=481	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04953g04001.1	sp|Q8RXK2|SDN3_ARATH	****	Small RNA degrading nuclease 3	IPR012337 (Ribonuclease H-like domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf20261g00003.1	sp|P49692|RL7A1_ARATH	***-	60S ribosomal protein L7a-1	IPR018492 (Ribosomal protein L7Ae/L8/Nhp2 family), IPR029064 (50S ribosomal protein L30e-like)	GO:0030529 (ribonucleoprotein complex), GO:0042254 (ribosome biogenesis)
Niben101Scf00192g01004.1	AT4G34860.1	*-*-	Plant neutral invertase family protein LENGTH=571	IPR024746 (Glycosyl hydrolase family 100)	GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf22099g00006.1	sp|Q9FGK4|B561J_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR006593 (Cytochrome b561/ferric reductase transmembrane)	
Niben101Scf01739g02012.1	sp|D3ZD32|CHD5_RAT	*-**	Chromodomain-helicase-DNA-binding protein 5	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR009057 (Homeodomain-like), IPR009463 (Domain of unknown function DUF1087), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016197 (Chromo domain-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding)
Niben101Scf06700g04004.1	AT3G44730.1	****	kinesin-like protein 1 LENGTH=1087	IPR001715 (Calponin homology domain), IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00375g01013.1	sp|Q9SR71|TAF12_ARATH	****	Transcription initiation factor TFIID subunit 12	IPR009072 (Histone-fold)	GO:0005669 (transcription factor TFIID complex), GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity)
Niben101Scf03934g05025.1	sp|Q15649|ZNHI3_HUMAN	***-	Zinc finger HIT domain-containing protein 3	IPR007529 (Zinc finger, HIT-type)	
Niben101Scf01413g00010.1	sp|Q6GQE1|T184C_XENLA	***-	Transmembrane protein 184C	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184)	
Niben101Scf01267g06001.1	gb|KEH22042.1|	***-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf01627g03009.1	sp|Q9S7Y1|BH030_ARATH	***-	Transcription factor bHLH30	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf08203g00022.1	sp|P14232|TGA1A_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1A	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04487g04008.1	AT2G39110.1	****	Protein kinase superfamily protein LENGTH=435	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01731g00005.1	AT4G22790.1	*-*-	MATE efflux family protein LENGTH=491	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01710g01016.1	AT1G09320.1	*-*-	agenet domain-containing protein LENGTH=517	IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf20316g01001.1	sp|Q5FPT6|GLND_GLUOX	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf04404g05001.1	AT1G51210.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=433	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03764g00005.1	AT3G48710.1	*-*-	DEK domain-containing chromatin associated protein LENGTH=462	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf00951g01014.1	sp|Q99417|MYCBP_HUMAN	***-	C-Myc-binding protein	IPR026060 (Associate of Myc 1)	GO:0003713 (transcription coactivator activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03254g02006.1	sp|Q802D3|XPO4_DANRE	*-*-	Exportin-4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf06819g00007.1	sp|O24172|ALL6_OLEEU	***-	Major pollen allergen Ole e 6	IPR015333 (Pollen allergen ole e 6)	
Niben101Scf02814g04008.1	AT3G61035.1	*-*-	Cytochrome P450 superfamily protein LENGTH=340	IPR001128 (Cytochrome P450), IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0005506 (iron ion binding), GO:0008270 (zinc ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04052g01020.1	sp|P54671|H1_DICDI	--*-	Histone H1	IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf00854g04014.1	gb|ADV15959.1|	*-*-	maturase, partial (mitochondrion) [Montinia caryophyllacea]		
Niben101Scf09140g01001.1	AT1G51538.1	***-	Aminotransferase-like, plant mobile domain family protein LENGTH=696	IPR006904 (Protein of unknown function DUF716 (TMEM45)), IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf07201g01007.1	AT5G63310.1	****	nucleoside diphosphate kinase 2 LENGTH=231	IPR001564 (Nucleoside diphosphate kinase)	GO:0004550 (nucleoside diphosphate kinase activity), GO:0005524 (ATP binding), GO:0006165 (nucleoside diphosphate phosphorylation), GO:0006183 (GTP biosynthetic process), GO:0006228 (UTP biosynthetic process), GO:0006241 (CTP biosynthetic process)
Niben101Scf09310g02012.1	sp|B1I3J6|DXS_DESAP	*-*-	1-deoxy-D-xylulose-5-phosphate synthase	IPR005475 (Transketolase-like, pyrimidine-binding domain), IPR005476 (Transketolase, C-terminal), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01943g10014.1	ref|XP_007049220.1|	***-	PTB domain-containing engulfment adapter protein 1 isoform 1 [Theobroma cacao] gb|EOX93377.1| PTB domain-containing engulfment adapter protein 1 isoform 1 [Theobroma cacao]		
Niben101Scf00157g05005.1	ref|XP_002869579.1|	****	rab GTPase activator [Arabidopsis lyrata subsp. lyrata] gb|EFH45838.1| rab GTPase activator [Arabidopsis lyrata subsp. lyrata]	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf03515g00058.1	emb|CDY70488.1|	*-*-	BnaUnng03880D, partial [Brassica napus]		
Niben101Scf08047g03018.1	sp|Q0IQU1|LAC22_ORYSJ	***-	Laccase-22	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09149g00008.1	sp|A7A179|ATG26_YEAS7	--*-	Sterol 3-beta-glucosyltransferase	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05375g00003.1	gb|AEM24937.1|	***-	thionin-like protein [Nicotiana tabacum]		
Niben101Scf04375g02015.1	AT3G53260.1	****	phenylalanine ammonia-lyase 2 LENGTH=717	IPR001106 (Aromatic amino acid lyase), IPR023144 (Phenylalanine ammonia-lyase, shielding domain), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0006559 (L-phenylalanine catabolic process), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf01283g01002.1	AT5G50420.1	***-	O-fucosyltransferase family protein LENGTH=566	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf00537g02001.1	ref|WP_019475137.1|	*-**	membrane protein [Prochlorococcus sp. W2]	IPR003425 (Uncharacterised protein family Ycf19)	GO:0016020 (membrane)
Niben101Scf15532g01011.1	emb|CDX82932.1|	***-	BnaC01g13820D [Brassica napus]		
Niben101Scf01188g10020.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf04504g02017.1	gb|ABF97674.1|	*-*-	expressed protein [Oryza sativa Japonica Group]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf00176g01010.1	sp|Q84UU9|TPS06_ARATH	****	Terpenoid synthase 6	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf01235g00018.1	sp|B0K590|BIOF_THEPX	***-	8-amino-7-oxononanoate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03405g02004.1	sp|Q8LEA8|EID1_ARATH	***-	Phytochrome A-associated F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf06342g03004.1			Unknown protein		
Niben101Scf04654g02012.1	sp|A8MQA3|PP330_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01237g10006.1	AT3G56200.1	***-	Transmembrane amino acid transporter family protein LENGTH=435	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf04300g00008.1	sp|A3CTG2|RS10_METMJ	--*-	30S ribosomal protein S10	IPR001848 (Ribosomal protein S10), IPR027486 (Ribosomal protein S10 domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01634g02020.1	sp|E9PZM4|CHD2_MOUSE	*-**	Chromodomain-helicase-DNA-binding protein 2	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR020838 (DBINO domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides)
Niben101Scf04551g04014.1	AT1G45050.1	***-	Ubiquitin-conjugating enzyme family protein LENGTH=161	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf07005g00020.1	ref|XP_007035914.1|	*-*-	Calcium-dependent lipid-binding family protein isoform 1 [Theobroma cacao] gb|EOY06840.1| Calcium-dependent lipid-binding family protein isoform 1 [Theobroma cacao]	IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf01721g07006.1	sp|Q44256|CBAA_COMTE	*-**	3-chlorobenzoate-3,4-dioxygenase oxygenase subunit	IPR013626 (Pheophorbide a oxygenase), IPR017941 (Rieske [2Fe-2S] iron-sulphur domain)	GO:0010277 (chlorophyllide a oxygenase [overall] activity), GO:0016491 (oxidoreductase activity), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05304g05007.1	ref|XP_004333951.1|	*-**	integral membrane protein duf6 domain containing protein [Acanthamoeba castellanii str. Neff] gb|ELR11938.1| integral membrane protein duf6 domain containing protein [Acanthamoeba castellanii str. Neff]	IPR000620 (EamA domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf02337g00013.1	sp|Q43383|ACCH5_ARATH	*-*-	1-aminocyclopropane-1-carboxylate oxidase homolog 5	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf06826g07003.1	sp|P30792|PMGI_MAIZE	--*-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase		
Niben101Scf01782g11001.1	gb|AAS86304.1|	*-*-	myc-like anthocyanin regulatory protein [Cornus unalaschkensis]	IPR025610 (Transcription factor MYC/MYB N-terminal)	
Niben101Scf15187g00004.1	sp|Q3U2S4|OTUD5_MOUSE	*-*-	OTU domain-containing protein 5	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf02552g03001.1	sp|Q7XWU8|EXPA1_ORYSJ	***-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region)
Niben101Scf01702g06002.1	AT1G75590.1	***-	SAUR-like auxin-responsive protein family LENGTH=154	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01664g02017.1	sp|Q2TA10|UB2D1_BOVIN	***-	Ubiquitin-conjugating enzyme E2 D1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf10464g00014.1	sp|Q9C9R3|T112B_ARATH	*-*-	Multifunctional methyltransferase subunit TRM112-like protein	IPR005651 (Uncharacterised protein family UPF0434/Trm112)	
Niben101Scf03114g01002.1	sp|Q9LTD8|Y5279_ARATH	***-	DUF21 domain-containing protein	IPR000644 (CBS domain), IPR002550 (Domain of unknown function DUF21)	
Niben101Scf11953g03015.1	sp|Q39016|CDPKB_ARATH	*-**	Calcium-dependent protein kinase 11	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07347g00001.1	sp|Q5F5V1|RS4_NEIG1	--*-	30S ribosomal protein S4	IPR002942 (RNA-binding S4 domain), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding)
Niben101Ctg15661g00002.1	AT1G27510.1	*-*-	Protein of unknown function (DUF3506) LENGTH=651		
Niben101Scf01834g00011.1	sp|Q9FPT1|UBP12_ARATH	*-*-	Ubiquitin carboxyl-terminal hydrolase 12	IPR024729 (ICP0-binding domain of Ubiquitin-specific protease 7)	
Niben101Scf00411g00006.1	sp|Q04609|FOLH1_HUMAN	***-	Glutamate carboxypeptidase 2	IPR007365 (Transferrin receptor-like, dimerisation domain), IPR007484 (Peptidase M28)	
Niben101Scf04904g00002.1	AT5G47060.1	***-	Protein of unknown function (DUF581) LENGTH=177	IPR007650 (Zf-FLZ domain)	
Niben101Scf34696g00005.1	AT4G18210.1	*-*-	purine permease 10 LENGTH=390	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf02268g13001.1	sp|Q66I06|GGACB_DANRE	***-	Gamma-glutamylaminecyclotransferase B	IPR013024 (Butirosin biosynthesis, BtrG-like)	
Niben101Scf04793g01008.1	sp|Q8IFW4|THIOT_DROME	*-*-	Thioredoxin-T	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf10579g00005.1			Unknown protein		
Niben101Scf04322g00005.1			Unknown protein		
Niben101Scf02386g01005.1	AT2G44810.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=357	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf05692g07011.1			Unknown protein		
Niben101Scf03268g06001.1	dbj|BAA96881.1|	*-*-	mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf03539g00002.1	sp|Q9W0P5|GALE_DROME	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005886 (UDP-glucose 4-epimerase GalE), IPR025308 (UDP-glucose 4-epimerase C-terminal domain)	GO:0003824 (catalytic activity), GO:0003978 (UDP-glucose 4-epimerase activity), GO:0006012 (galactose metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf03309g00009.1	gb|ABD28646.1|	*-**	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf02826g01012.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05601g00001.1	sp|P92943|CLCD_ARATH	****	Chloride channel protein CLC-d	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01826g03006.1	sp|O04202|EIF3F_ARATH	*-*-	Eukaryotic translation initiation factor 3 subunit F	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain)	GO:0005515 (protein binding)
Niben101Scf08488g03002.1	sp|Q38897|BEL1_ARATH	***-	Homeobox protein BEL1 homolog	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06621g02011.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf10807g02003.1	AT3G48240.1	*-*-	Octicosapeptide/Phox/Bem1p family protein LENGTH=180	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf01374g10004.1	sp|Q9LU15|AHP4_ARATH	***-	Histidine-containing phosphotransfer protein 4	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity)
Niben101Scf07304g07011.1	sp|Q08436|PMA3_NICPL	****	Plasma membrane ATPase 3	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf05193g00003.1	sp|O65238|Y5537_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like)	GO:0048544 (recognition of pollen)
Niben101Scf04226g00006.1			Unknown protein		
Niben101Scf00626g02017.1	ref|XP_007038656.1|	***-	Chrom isoform 1 [Theobroma cacao]	IPR018607 (Chromosome transmission fidelity protein 8)	
Niben101Scf00372g03019.1	sp|P0C0V4|DPH3_EMENI	***-	Diphthamide biosynthesis protein 3	IPR007872 (Zinc finger, DPH-type)	
Niben101Scf05102g03001.1	gb|KEH29332.1|	--*-	LRR receptor-like kinase family protein [Medicago truncatula]	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf09883g00005.1	sp|Q9C652|RBP1_ARATH	*-**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf13621g01004.1	sp|Q9M363|B561I_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf02744g01008.1	sp|P49676|BGAL_BRAOL	***-	Beta-galactosidase	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf05880g02001.1	sp|P92985|RBP1C_ARATH	****	Ran-binding protein 1 homolog c	IPR011993 (Pleckstrin homology-like domain)	GO:0046907 (intracellular transport)
Niben101Scf06311g01016.1	emb|CDY09944.1|	***-	BnaC08g45070D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf04331g07013.1			Unknown protein		
Niben101Scf03953g02019.1	AT1G49330.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=331		
Niben101Scf18612g00001.1	sp|Q3J7H2|HIS82_NITOC	*-**	Histidinol-phosphate aminotransferase 2	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016846 (carbon-sulfur lyase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02627g00015.1	emb|CDY25179.1|	*-*-	BnaC06g04040D [Brassica napus]		
Niben101Ctg15273g00002.1	AT3G25130.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). LENGTH=406		
Niben101Scf06248g01003.1	sp|O23487|BH003_ARATH	***-	Transcription factor bHLH3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf01817g01001.1	sp|Q9LW49|ERF4_NICSY	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01859g00003.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05363g04007.1	AT5G66850.1	*-**	mitogen-activated protein kinase kinase kinase 5 LENGTH=716	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00348g01012.1	sp|O49564|CRK27_ARATH	*-**	Cysteine-rich receptor-like protein kinase 27	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01620g02011.1	gb|AES73679.2|	*-**	zinc finger (Ran-binding) family protein [Medicago truncatula]	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf04206g02007.1	sp|Q15649|ZNHI3_HUMAN	***-	Zinc finger HIT domain-containing protein 3	IPR007529 (Zinc finger, HIT-type)	
Niben101Scf05848g04014.1	sp|A4QJA7|RPOB_AETCO	****	DNA-directed RNA polymerase subunit beta	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf00389g01002.1	AT1G12250.1	*-*-	Pentapeptide repeat-containing protein LENGTH=280	IPR001646 (Pentapeptide repeat)	
Niben101Scf03832g00002.1	sp|Q02096|PGLR_PERAE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01975g02003.1	sp|P80595|APY_SOLTU	***-	Apyrase	IPR000407 (Nucleoside phosphatase GDA1/CD39)	GO:0016787 (hydrolase activity)
Niben101Scf06650g02003.1	AT3G22600.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=170	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf20077g00016.1	sp|Q55E35|SPCS2_DICDI	****	Signal peptidase complex subunit 2	IPR009582 (Signal peptidase complex subunit 2)	GO:0005787 (signal peptidase complex), GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf12694g00015.1	AT1G22930.1	*-*-	T-complex protein 11 LENGTH=1131	IPR008862 (T-complex 11)	
Niben101Scf01804g00081.1	gb|AFI44275.1|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Silene vulgaris]		
Niben101Scf04664g00002.1	AT2G21270.3	****	ubiquitin fusion degradation 1 LENGTH=340	IPR004854 (Ubiquitin fusion degradation protein UFD1)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf00369g11013.1	sp|Q77J49|UB222_WSSVS	--*-	RING finger containing E3 ubiquitin-protein ligase WSV222	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04741g04001.1	sp|A5GQT3|MSRB_SYNR3	****	Peptide methionine sulfoxide reductase MsrB	IPR011057 (Mss4-like), IPR028427 (Peptide methionine sulfoxide reductase)	GO:0006979 (response to oxidative stress), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0030091 (protein repair), GO:0033743 (peptide-methionine (R)-S-oxide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05811g07001.1	sp|Q6R0E3|TRP5_ARATH	****	Telomere repeat-binding protein 5	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf18268g01001.1	sp|Q9LPR8|SCL3_ARATH	***-	Scarecrow-like protein 3	IPR005202 (Transcription factor GRAS), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase), IPR030008 (Scarecrow-like protein 3)	GO:0000989 (transcription factor binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf01002g00008.1	ref|NP_001118630.1|	*-*-	high chlorophyll fluorescence 243 [Arabidopsis thaliana] gb|AEE75618.1| high chlorophyll fluorescence 243 [Arabidopsis thaliana]		
Niben101Scf00351g00007.1	AT2G22690.1	****	zinc ion binding LENGTH=381	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013144 (CRA domain), IPR024964 (CTLH/CRA C-terminal to LisH motif domain), IPR027370 (RING-type zinc-finger, LisH dimerisation motif), IPR027711 (Rmd5)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf11030g00003.1	sp|P43509|CPR5_CAEEL	****	Cathepsin B-like cysteine proteinase 5	IPR013128 (Peptidase C1A), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf04455g04012.1	AT5G65380.1	***-	MATE efflux family protein LENGTH=486	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03018g13024.1	sp|O94808|GFPT2_HUMAN	****	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2	IPR005855 (Glucosamine-fructose-6-phosphate aminotransferase, isomerising), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004360 (glutamine-fructose-6-phosphate transaminase (isomerizing) activity), GO:0005975 (carbohydrate metabolic process), GO:0016051 (carbohydrate biosynthetic process), GO:0030246 (carbohydrate binding)
Niben101Scf05002g03026.1	ref|XP_010103716.1|	--*-	Sentrin-specific protease 1 [Morus notabilis] gb|EXB96858.1| Sentrin-specific protease 1 [Morus notabilis]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf08618g01001.1	sp|Q9YIC0|EF1A_ORYLA	****	Elongation factor 1-alpha	IPR004539 (Translation elongation factor EF1A, eukaryotic/archaeal), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005737 (cytoplasm), GO:0006414 (translational elongation)
Niben101Scf14883g03001.1	sp|O94808|GFPT2_HUMAN	*-**	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2	IPR005855 (Glucosamine-fructose-6-phosphate aminotransferase, isomerising), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004360 (glutamine-fructose-6-phosphate transaminase (isomerizing) activity), GO:0016051 (carbohydrate biosynthetic process)
Niben101Scf00337g07013.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf14883g02006.1	sp|Q3EDF8|PPR28_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00960g02007.1	sp|Q84J37|LAC15_ARATH	*-*-	Laccase-15	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00163g09011.1	AT1G28710.1	***-	Nucleotide-diphospho-sugar transferase family protein LENGTH=340	IPR005069 (Nucleotide-diphospho-sugar transferase)	
Niben101Scf00784g02005.1	AT5G03730.2	*-**	Protein kinase superfamily protein LENGTH=821	IPR011009 (Protein kinase-like domain), IPR028324 (Serine/threonine-protein kinase CTR1)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00487g00016.1			Unknown protein		
Niben101Scf00123g06014.1	AT3G15660.1	***-	glutaredoxin 4 LENGTH=169	IPR004480 (Monothiol glutaredoxin-related), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf07147g00005.1	sp|A8MBU4|NPD_CALMQ	*-**	NAD-dependent protein deacetylase	IPR003000 (Sirtuin family), IPR029035 (DHS-like NAD/FAD-binding domain)	GO:0070403 (NAD+ binding)
Niben101Scf15979g00001.1	AT1G52720.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=117		
Niben101Scf00831g01006.1	sp|O22527|CLH1_ARATH	****	Chlorophyllase-1	IPR010821 (Chlorophyllase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0015996 (chlorophyll catabolic process), GO:0047746 (chlorophyllase activity)
Niben101Scf05102g03002.1	sp|Q9SGP2|HSL1_ARATH	--*-	Receptor-like protein kinase HSL1		
Niben101Scf13868g03002.1			Unknown protein		
Niben101Scf11922g01018.1	AT2G44380.1	*-*-	Cysteine/Histidine-rich C1 domain family protein LENGTH=247	IPR004146 (DC1), IPR011424 (C1-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06677g01004.1	sp|Q9GKX2|DHRS4_RABIT	--*-	Dehydrogenase/reductase SDR family member 4	IPR016040 (NAD(P)-binding domain)	
Niben101Scf03555g01001.1	AT3G59080.1	***-	Eukaryotic aspartyl protease family protein LENGTH=535	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf07155g01015.1	AT3G03940.1	****	Protein kinase family protein LENGTH=701	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04110g03009.1	sp|O23044|PER3_ARATH	*-**	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03309g00008.1			Unknown protein	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf37066g00004.1	ref|WP_000253058.1|	*-*-	acyl-CoA synthetase [Acinetobacter baumannii]	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf02740g07004.1	ref|WP_019379740.1|	--*-	ribonuclease H [Bacillus oceanisediminis]		
Niben101Scf01221g13007.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05364g01001.1	gb|ABF93982.1|	*-*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf07965g02019.1	sp|Q9YER0|PSB2_AERPE	****	Proteasome subunit beta 2	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf04181g00037.1	AT2G17265.1	****	homoserine kinase LENGTH=370	IPR000870 (Homoserine kinase), IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0004413 (homoserine kinase activity), GO:0005524 (ATP binding), GO:0006566 (threonine metabolic process)
Niben101Scf11107g00008.1	AT5G66230.1	***-	Chalcone-flavanone isomerase family protein LENGTH=329		
Niben101Scf05439g02051.1	sp|Q1QN08|RS13_NITHX	***-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH), IPR027437 (30s ribosomal protein S13, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07457g01006.1			Unknown protein		
Niben101Ctg14127g00001.1	sp|Q71ZR7|MUTS_LISMF	--**	DNA mismatch repair protein MutS	IPR000432 (DNA mismatch repair protein MutS, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf04495g02001.1			Unknown protein		
Niben101Scf23111g00011.1	sp|Q8LFH7|RL371_ARATH	***-	60S ribosomal protein L37-1	IPR001569 (Ribosomal protein L37e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02072g01001.1	AT3G63390.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=175		
Niben101Scf06344g01016.1	AT4G36910.1	*-*-	Cystathionine beta-synthase (CBS) family protein LENGTH=236	IPR000644 (CBS domain)	
Niben101Scf10798g00006.1	sp|Q9LHP1|RL74_ARATH	***-	60S ribosomal protein L7-4	IPR005998 (Ribosomal protein L7, eukaryotic)	
Niben101Scf33214g00010.1	sp|Q0CGL5|NACB_ASPTN	*-*-	Nascent polypeptide-associated complex subunit beta	IPR002715 (Nascent polypeptide-associated complex NAC domain)	
Niben101Scf04083g04008.1	sp|P81778|TL17_SPIOL	--*-	Thylakoid lumenal 17.4 kDa protein	IPR001646 (Pentapeptide repeat)	
Niben101Scf10415g02012.1	ref|XP_002521422.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF40912.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03390g06006.1	sp|Q5P4D1|GATB_AROAE	--*-	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B		
Niben101Scf03292g03005.1	sp|Q94KB7|MLO6_ARATH	***-	MLO-like protein 6	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf07005g00021.1	ref|XP_007035914.1|	****	Calcium-dependent lipid-binding family protein isoform 1 [Theobroma cacao] gb|EOY06840.1| Calcium-dependent lipid-binding family protein isoform 1 [Theobroma cacao]	IPR000008 (C2 domain), IPR009291 (Vacuolar protein sorting-associated protein 62), IPR009543 (Vacuolar protein sorting-associated protein 13 domain), IPR010482 (Peroxin/Dysferlin domain), IPR026847 (Vacuolar protein sorting-associated protein 13)	GO:0005515 (protein binding), GO:0016021 (integral component of membrane)
Niben101Scf08470g01001.1	sp|Q9FG87|KCS19_ARATH	***-	3-ketoacyl-CoA synthase 19	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01111g06008.1	sp|Q8L4B2|NFYC9_ARATH	*-**	Nuclear transcription factor Y subunit C-9	IPR009072 (Histone-fold), IPR027170 (Transcriptional activator NFYC/HAP5 subunit)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005622 (intracellular), GO:0006355 (regulation of transcription, DNA-templated), GO:0016602 (CCAAT-binding factor complex), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf00419g00023.1	sp|Q9C690|BH122_ARATH	*-*-	Transcription factor bHLH122	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf09792g00018.1	AT1G32580.1	***-	plastid developmental protein DAG, putative LENGTH=229		
Niben101Scf03337g06007.1	AT4G00150.1	*-*-	GRAS family transcription factor LENGTH=558	IPR005202 (Transcription factor GRAS)	
Niben101Scf04174g00006.1	sp|C4XGC2|NQOR_DESMR	***-	NAD(P)H dehydrogenase (quinone)	IPR010089 (Flavoprotein WrbA), IPR029039 (Flavoprotein-like)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0045892 (negative regulation of transcription, DNA-templated)
Niben101Scf07849g00012.1	AT4G11400.1	*-*-	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=573		
Niben101Scf11491g00006.1	AT1G48840.1	***-	Plant protein of unknown function (DUF639) LENGTH=691	IPR006927 (Protein of unknown function DUF639)	
Niben101Scf05491g09004.1	sp|P93003|TFL1_ARATH	***-	Protein TERMINAL FLOWER 1	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf02853g06021.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf08804g03006.1	AT3G17850.1	****	Protein kinase superfamily protein LENGTH=1296	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg15999g00004.1	sp|Q3A526|HLDE_PELCD	*-*-	Bifunctional protein HldE	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process)
Niben101Scf02156g15007.1	emb|CDY02362.1|	***-	BnaA09g25400D [Brassica napus]		
Niben101Scf04506g03013.1	AT1G67640.1	***-	Transmembrane amino acid transporter family protein LENGTH=441	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf05044g00009.1	emb|CDX84542.1|	*-*-	BnaC03g49580D [Brassica napus]		
Niben101Scf20099g01009.1	sp|O04138|CHI4_ORYSJ	****	Chitinase 4	IPR000726 (Glycoside hydrolase, family 19, catalytic), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0006032 (chitin catabolic process), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf00094g00007.1	sp|Q9LUR0|CNDH2_ARATH	***-	Condensin-2 complex subunit H2	IPR009378 (Non-SMC condensin II complex, subunit H2-like)	
Niben101Scf09133g03022.1			Unknown protein		
Niben101Scf05491g01004.1	sp|F4HW17|TMN5_ARATH	***-	Transmembrane 9 superfamily member 5	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf06974g00017.1	sp|Q9M7J9|POT8_ARATH	****	Potassium transporter 8	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf05111g03003.1	ref|XP_007009615.1|	*-*-	SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 4 [Theobroma cacao] gb|EOY18425.1| SAC3/GANP/Nin1/mts3/eIF-3 p25 family isoform 4 [Theobroma cacao]		
Niben101Scf06437g04008.1	sp|Q9C652|RBP1_ARATH	--**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05084g02002.1	sp|G7JG80|CASP2_MEDTR	***-	Casparian strip membrane protein 2	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf20512g01003.1			Unknown protein		
Niben101Scf06218g01003.1	AT1G30755.1	***-	Protein of unknown function (DUF668) LENGTH=615	IPR007700 (Protein of unknown function DUF668)	
Niben101Scf03444g01009.1			Unknown protein		
Niben101Scf01825g04002.1	sp|Q99614|TTC1_HUMAN	*-*-	Tetratricopeptide repeat protein 1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf19980g00001.1	sp|P28032|ADH2_SOLLC	***-	Alcohol dehydrogenase 2	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05250g00012.1	sp|Q09801|FIP1X_SCHPO	*-*-	Pre-mRNA polyadenylation factor fip1	IPR007854 (Pre-mRNA polyadenylation factor Fip1)	
Niben101Scf04987g00020.1	sp|Q6YYA3|CRS1_ORYSJ	***-	Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf03326g01021.1	AT3G03000.1	****	EF hand calcium-binding protein family LENGTH=165	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf12372g01007.1	AT5G56190.2	*-*-	Transducin/WD40 repeat-like superfamily protein LENGTH=447		
Niben101Scf01283g01001.1	ref|XP_007024787.1|	***-	Muscle M-line assembly protein unc-89, putative isoform 2 [Theobroma cacao] gb|EOY27409.1| Muscle M-line assembly protein unc-89, putative isoform 2 [Theobroma cacao]	IPR003611 (Nuclease associated modular domain 3)	GO:0003677 (DNA binding)
Niben101Scf04703g08013.1	AT1G02020.1	***-	nitroreductase family protein LENGTH=642	IPR000415 (Nitroreductase-like)	GO:0016491 (oxidoreductase activity)
Niben101Scf26575g00006.1	AT1G05450.2	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=205	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf08805g00006.1	emb|CCG48004.1|	***-	conserved hypothetical protein, expressed [Triticum aestivum]		
Niben101Scf04146g02002.1	AT5G27200.1	***-	acyl carrier protein 5 LENGTH=139	IPR003231 (Acyl carrier protein (ACP)), IPR009081 (Acyl carrier protein-like)	GO:0006633 (fatty acid biosynthetic process)
Niben101Scf08121g01004.1	ref|XP_007024062.1|	***-	CASC3/Barentsz eIF4AIII binding, putative isoform 5 [Theobroma cacao] gb|EOY26684.1| CASC3/Barentsz eIF4AIII binding, putative isoform 5 [Theobroma cacao]	IPR018545 (Btz domain)	
Niben101Scf09590g03001.1			Unknown protein		
Niben101Scf16665g00004.1	sp|Q9FPT1|UBP12_ARATH	*-*-	Ubiquitin carboxyl-terminal hydrolase 12	IPR024729 (ICP0-binding domain of Ubiquitin-specific protease 7)	
Niben101Scf06458g01016.1	sp|O14343|KLP5_SCHPO	*-**	Kinesin-like protein 5	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00046g04021.1	sp|Q9SVX4|FB205_ARATH	--*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf06628g01013.1	sp|Q945T0|RALF_TOBAC	***-	Rapid alkalinization factor	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf05375g00004.1	gb|AEM24937.1|	***-	thionin-like protein [Nicotiana tabacum]		
Niben101Scf00391g02007.1	sp|Q9XHP1|2SS1_SESIN	--*-	2S seed storage protein 1	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf07451g01013.1	gb|AFW04224.1|	****	phosphoethanolamine N-methyl transferase [Suaeda maritima]	IPR025771 (Phosphoethanolamine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0000234 (phosphoethanolamine N-methyltransferase activity), GO:0006656 (phosphatidylcholine biosynthetic process), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf06019g01023.1	sp|P26527|ATPB_SYNY3	*-**	ATP synthase subunit beta	IPR004100 (ATPase, F1 complex alpha/beta subunit, N-terminal domain)	GO:0015992 (proton transport), GO:0046034 (ATP metabolic process)
Niben101Scf05583g00009.1	sp|Q5RJC5|C3H67_ARATH	***-	Zinc finger CCCH domain-containing protein 67	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf03000g02002.1	AT4G32290.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=384	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf02074g07014.1	sp|Q04716|RT03_PETHY	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf12922g00021.1			Unknown protein		
Niben101Scf02241g00004.1	AT4G12770.1	*-*-	Chaperone DnaJ-domain superfamily protein LENGTH=891	IPR001623 (DnaJ domain)	
Niben101Scf00157g06004.1	tpg|DAA35905.1|	***-	TPA: hypothetical protein ZEAMMB73_888269 [Zea mays]	IPR011989 (Armadillo-like helical), IPR028222 (AP-5 complex subunit zeta-1)	GO:0044599 (AP-5 adaptor complex)
Niben101Scf04558g01009.1	AT1G65700.3	***-	Small nuclear ribonucleoprotein family protein LENGTH=141	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf00113g04027.1	sp|Q0H904|XYNC_ASPFU	*-*-	Endo-1,4-beta-xylanase C	IPR001000 (Glycoside hydrolase, family 10), IPR008979 (Galactose-binding domain-like), IPR015300 (DNA-binding pseudobarrel domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02569g03015.1	sp|Q9SB00|PHR_ARATH	****	Deoxyribodipyrimidine photo-lyase	IPR008148 (DNA photolyase, class 2)	GO:0003904 (deoxyribodipyrimidine photo-lyase activity), GO:0003913 (DNA photolyase activity), GO:0006281 (DNA repair)
Niben101Ctg04140g00001.1	sp|P54772|DCHS_SOLLC	*-*-	Histidine decarboxylase	IPR015424 (Pyridoxal phosphate-dependent transferase)	
Niben101Scf05109g00012.1	AT5G57800.1	*-**	Fatty acid hydroxylase superfamily LENGTH=632	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00792g04006.1	sp|Q84K00|NAC78_ARATH	***-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06457g00006.1	sp|Q94A21|SPX4_ARATH	***-	SPX domain-containing protein 4	IPR004331 (SPX, N-terminal)	
Niben101Scf01018g01007.1	ref|XP_002521097.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF41248.1| conserved hypothetical protein [Ricinus communis]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf04296g00019.1	sp|O82504|RDR2_ARATH	****	RNA-dependent RNA polymerase 2	IPR007855 (RNA-dependent RNA polymerase, eukaryotic-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003968 (RNA-directed RNA polymerase activity)
Niben101Scf00135g00027.1	AT4G38810.2	****	Calcium-binding EF-hand family protein LENGTH=375	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf09998g01014.1	AT1G05020.1	*-*-	ENTH/ANTH/VHS superfamily protein LENGTH=653	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf08334g03002.1	AT1G78560.1	***-	Sodium Bile acid symporter family LENGTH=401	IPR002657 (Bile acid:sodium symporter/arsenical resistance protein  Acr3)	GO:0016020 (membrane)
Niben101Scf00165g00007.1	sp|Q7Z8L4|PYRF_PENCA	*-**	Orotidine 5'-phosphate decarboxylase	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004590 (orotidine-5'-phosphate decarboxylase activity), GO:0006207 ('de novo' pyrimidine nucleobase biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf07391g01012.1	AT3G44970.1	***-	Cytochrome P450 superfamily protein LENGTH=479	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05932g05001.1	emb|CAE04909.2|	*-*-	OSJNBa0082E08.6 [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf18347g00001.1			Unknown protein		
Niben101Scf00472g00003.1	sp|Q9XHS0|RS12_HORVU	***-	40S ribosomal protein S12	IPR000530 (Ribosomal protein S12e), IPR029064 (50S ribosomal protein L30e-like)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06700g04003.1	sp|Q9C9X3|ANXD5_ARATH	*-*-	Annexin D5	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf03491g01001.1	ref|WP_030734978.1|	*-*-	3-dehydroquinate dehydratase [Streptomyces sp. NRRL F-2890]	IPR001943 (UVR domain)	GO:0005515 (protein binding)
Niben101Scf01888g07008.1	emb|CDX88369.1|	-**-	BnaC06g38130D [Brassica napus]	IPR007789 (Protein of unknown function DUF688)	
Niben101Scf09710g00025.1	gb|AIF76113.1|	****	cytochrome c biogenesis B, partial (mitochondrion) [Halodule pinifolia]	IPR003544 (Cytochrome c-type biogenesis protein CcmB)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf10203g00005.1			Unknown protein		
Niben101Scf04509g00004.1	sp|O48822|Y2794_ARATH	***-	WEB family protein		
Niben101Scf04456g00002.1	sp|Q2MID1|NDHH_SOLBU	*-**	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H), IPR029014 (NiFe hydrogenase-like)	GO:0016020 (membrane), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11125g00012.1	emb|CDY28852.1|	--*-	BnaC06g26400D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf02235g02001.1	sp|Q93YX4|APRL5_ARATH	***-	5'-adenylylsulfate reductase-like 5	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf02992g03010.1	sp|F4JGP4|ATK5_ARATH	*-**	Kinesin-5	IPR001752 (Kinesin motor domain), IPR009057 (Homeodomain-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003677 (DNA binding), GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding), GO:0009904 (chloroplast accumulation movement)
Niben101Scf02240g06018.1	sp|Q9FNX5|DRP1E_ARATH	***-	Dynamin-related protein 1E	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf10158g01033.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR015757 (Calcineurin B protein)	GO:0005509 (calcium ion binding)
Niben101Scf09149g01005.1	sp|P00303|BABL_CUCSA	***-	Basic blue protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf00801g04008.1	sp|Q6NLB1|FB118_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00107g03008.1	sp|A6MFK9|CRVP_DEMVE	***-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Ctg05305g00003.1	sp|Q9FKE6|CCT15_ARATH	--*-	Cyclin-T1-5		
Niben101Scf04003g02005.1	AT5G67080.1	****	mitogen-activated protein kinase kinase kinase 19 LENGTH=344	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13029g02007.1	AT5G22510.1	***-	alkaline/neutral invertase LENGTH=617	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf00446g08002.1	sp|A4GGA2|PSBD_PHAVU	*-*-	Photosystem II D2 protein		
Niben101Scf02929g01064.1	ref|XP_002535525.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF26858.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02869g12002.1	sp|Q9FXJ2|GDL7_ARATH	****	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016298 (lipase activity), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf05343g01007.1	AT5G53550.1	***-	YELLOW STRIPE like 3 LENGTH=675	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf08721g01032.1	sp|Q94KT8|COBRA_ARATH	***-	Protein COBRA	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf02044g12019.1			Unknown protein		
Niben101Scf08007g02008.1	sp|O13911|PNK1_SCHPO	*-*-	Bifunctional polynucleotide phosphatase/kinase	IPR013954 (Polynucleotide kinase 3 phosphatase), IPR023214 (HAD-like domain)	
Niben101Scf17747g00001.1	emb|CAA06242.1|	***-	P18 protein [Nicotiana alata]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf07650g03016.1	sp|B8ARW3|CSPLA_ORYSI	-**-	CASP-like protein 2A1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf09668g00013.1	sp|Q944M5|SWET4_ARATH	*-*-	Bidirectional sugar transporter SWEET4		
Niben101Scf00854g08084.1			Unknown protein		
Niben101Scf00948g00001.1	AT5G16530.1	*-*-	Auxin efflux carrier family protein LENGTH=351	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03572g03007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00436g10014.1			Unknown protein		
Niben101Scf08391g03010.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg11970g00004.1	AT5G10240.1	*-**	asparagine synthetase 3 LENGTH=578	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004066 (asparagine synthase (glutamine-hydrolyzing) activity), GO:0006529 (asparagine biosynthetic process)
Niben101Scf01001g01003.1	ref|WP_029454219.1|	*-*-	crossover junction endodeoxyribonuclease [Candidatus Pelagibacter ubique]		
Niben101Scf14118g01003.1	sp|Q2IQG7|SYC_ANADE	****	Cysteine--tRNA ligase	IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding), IPR024909 (Cysteinyl-tRNA synthetase/mycothiol ligase)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004817 (cysteine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006423 (cysteinyl-tRNA aminoacylation)
Niben101Scf07036g01013.1			Unknown protein		
Niben101Scf13680g00002.1	AT2G30400.1	*-*-	ovate family protein 2 LENGTH=320	IPR006458 (Ovate  protein family, C-terminal), IPR025830 (DNA-binding domain, ovate family-like)	GO:0003677 (DNA binding)
Niben101Scf01866g03010.1	sp|Q9Y6U7|RN215_HUMAN	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01594g05014.1	sp|Q54EN4|PDI2_DICDI	****	Protein disulfide-isomerase 2	IPR005792 (Protein disulphide isomerase), IPR012336 (Thioredoxin-like fold)	GO:0005783 (endoplasmic reticulum), GO:0016853 (isomerase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01980g12012.1	sp|Q9S7L9|CX6B1_ARATH	*-**	Cytochrome c oxidase subunit 6b-1	IPR003213 (Cytochrome c oxidase, subunit VIb)	GO:0004129 (cytochrome-c oxidase activity), GO:0005739 (mitochondrion)
Niben101Scf02637g02011.1	sp|Q9FMA1|PP433_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05290g01011.1	sp|Q3ZC10|SMD1_BOVIN	***-	Small nuclear ribonucleoprotein Sm D1	IPR010920 (Like-Sm (LSM) domain), IPR027141 (U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3)	
Niben101Scf02407g06001.1	gb|AAA34060.1|	*-*-	cysteine-rich extensin-like protein-2 [Nicotiana tabacum]		
Niben101Scf02609g00003.1	sp|B9S2H4|Y232_RICCO	***-	UPF0392 protein RCOM_0530710	IPR008166 (Domain of unknown function DUF23)	
Niben101Scf03221g00001.1	gb|KEH32546.1|	*-*-	S-adenosyl-L-methionine-dependent methyltransferase [Medicago truncatula]	IPR022238 (Uncharacterised protein family, methyltransferase, Williams-Beuren syndrome)	
Niben101Scf09559g01002.1	AT2G31040.1	***-	ATP synthase protein I -related LENGTH=350		
Niben101Scf01435g03002.1	sp|Q0V7W6|ADHL5_ARATH	***-	Alcohol dehydrogenase-like 5	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05644g01005.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Ctg02999g00001.1	sp|Q9BZL6|KPCD2_HUMAN	*-**	Serine/threonine-protein kinase D2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02705g02020.1	sp|Q8W4H1|GAT26_ARATH	****	GATA transcription factor 26	IPR013088 (Zinc finger, NHR/GATA-type), IPR028020 (ASX homology domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04745g02008.1	AT3G15180.2	***-	ARM repeat superfamily protein LENGTH=551	IPR016024 (Armadillo-type fold), IPR019538 (26S proteasome non-ATPase regulatory subunit 5)	GO:0005488 (binding), GO:0043248 (proteasome assembly)
Niben101Scf04103g08001.1	sp|Q9SNE1|ERF11_ARATH	--*-	Ethylene-responsive transcription factor ERF011		
Niben101Scf04626g01002.1	AT1G24090.1	***-	RNase H family protein LENGTH=353	IPR011320 (Ribonuclease H1, N-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf00846g00003.1	sp|Q9SKQ4|PP167_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04377g00005.1	sp|P04766|IF2_GEOSE	****	Translation initiation factor IF-2	IPR005225 (Small GTP-binding protein domain), IPR009000 (Translation protein, beta-barrel domain), IPR015760 (Translation initiation factor IF- 2), IPR023115 (Translation initiation factor IF- 2, domain 3), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003743 (translation initiation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006413 (translational initiation)
Niben101Scf00059g03007.1	sp|Q32RI0|ATPB_ZYGCR	--*-	ATP synthase subunit beta, chloroplastic		
Niben101Scf00022g09009.1	sp|Q1PFH7|PPR89_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04633g02012.1	sp|Q8LGG8|USPAL_ARATH	****	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf16015g01003.1	sp|P33616|CP1A1_MACFA	***-	Cytochrome P450 1A1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00929g01006.1	sp|Q5B912|IPYR_EMENI	--**	Inorganic pyrophosphatase	IPR008162 (Inorganic pyrophosphatase)	GO:0000287 (magnesium ion binding), GO:0004427 (inorganic diphosphatase activity), GO:0005737 (cytoplasm), GO:0006796 (phosphate-containing compound metabolic process)
Niben101Scf07181g00001.1	sp|Q0WPE9|NAT7_ARATH	****	Nucleobase-ascorbate transporter 7	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf04038g02002.1	ref|XP_003589994.1|	--*-	LysM domain-containing receptor-like kinase [Medicago truncatula]		
Niben101Scf00367g10017.1	sp|Q9FJY7|PP449_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf09467g02008.1	sp|Q94AQ9|SGRL_ARATH	***-	Protein STAY-GREEN LIKE, chloroplastic	IPR024438 (Staygreen protein)	
Niben101Scf03419g14006.1	AT1G59520.3	***-	CW7 LENGTH=388	IPR019141 (Protein of unknown function DUF2045)	
Niben101Scf03810g02011.1	sp|Q9SS37|RTNLH_ARATH	***-	Reticulon-like protein B8	IPR003388 (Reticulon)	
Niben101Scf05552g08002.1	sp|B7K911|UREF_CYAP7	*-*-	Urease accessory protein UreF	IPR002639 (Urease accessory protein UreF), IPR005333 (Transcription factor, TCP)	GO:0006807 (nitrogen compound metabolic process), GO:0016151 (nickel cation binding)
Niben101Scf02426g00002.1			Unknown protein		
Niben101Scf05251g01011.1	emb|CAE04764.3|	--*-	OSJNBa0079C19.5 [Oryza sativa Japonica Group]		
Niben101Scf05709g01009.1	gb|KEH35985.1|	***-	sulfite exporter TauE/SafE family protein [Medicago truncatula]	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf11739g00004.1	AT5G45560.1	****	Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein LENGTH=719	IPR002913 (START domain), IPR009769 (Domain of unknown function DUF1336), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf02757g04009.1	AT5G57140.1	***-	purple acid phosphatase 28 LENGTH=397	IPR011230 (Phosphoesterase At2g46880), IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf11616g00009.1	AT5G03190.2	***-	conserved peptide upstream open reading frame 47 LENGTH=475	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf02408g04014.1	sp|P82381|ICI_LINUS	-***	Proteinase inhibitor	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding)
Niben101Scf04052g00010.1	sp|Q7MH54|RRAA_VIBVY	****	Regulator of ribonuclease activity A	IPR005493 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase), IPR010203 (Regulator of ribonuclease activity A)	GO:0008428 (ribonuclease inhibitor activity), GO:0051252 (regulation of RNA metabolic process)
Niben101Scf10423g02011.1	sp|Q9LJ44|COL12_ARATH	****	Zinc finger protein CONSTANS-LIKE 12	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf04764g05003.1	sp|Q942D4|BURP3_ORYSJ	***-	BURP domain-containing protein 3	IPR004873 (BURP domain)	
Niben101Scf06203g03009.1	ref|XP_003607265.1|	***-	Fasciclin-like arabinogalactan protein [Medicago truncatula]	IPR000782 (FAS1 domain)	
Niben101Scf00260g00002.1	sp|Q9LDW3|PUM11_ARATH	*-*-	Pumilio homolog 11	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf00457g09008.1			Unknown protein		
Niben101Scf05468g00007.1	sp|Q8LGU6|CD27B_ARATH	***-	Cell division cycle protein 27 homolog B	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03702g03012.1	emb|CDY53973.1|	***-	BnaA10g30050D [Brassica napus]		
Niben101Scf03488g03004.1	AT3G23820.1	****	UDP-D-glucuronate 4-epimerase 6 LENGTH=460	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf03737g06006.1			Unknown protein		
Niben101Scf01022g03003.1	AT3G06630.1	***-	protein kinase family protein LENGTH=671	IPR000014 (PAS domain)	GO:0004871 (signal transducer activity), GO:0007165 (signal transduction)
Niben101Scf03643g04007.1	sp|O04027|NFYB4_ARATH	***-	Nuclear transcription factor Y subunit B-4	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf09709g01016.1	AT2G25770.1	***-	Polyketide cyclase/dehydrase and lipid transport superfamily protein LENGTH=167	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf04932g01029.1	sp|Q9XHP0|11S2_SESIN	***-	11S globulin seed storage protein 2	IPR006044 (11-S seed storage protein, plant)	GO:0045735 (nutrient reservoir activity)
Niben101Scf00862g01016.1	sp|Q9LNI5|ETC1_ARATH	--*-	MYB-like transcription factor ETC1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07563g02014.1	AT4G34150.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=247	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf19230g01014.1	AT5G63400.1	****	adenylate kinase 1 LENGTH=246	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004017 (adenylate kinase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0016776 (phosphotransferase activity, phosphate group as acceptor), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf06275g03011.1	sp|P32026|DEF_TOBAC	***-	Defensin-like protein	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Ctg15954g00001.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf07851g02010.1	ref|XP_007016755.1|	*-*-	SIT4 ph isoform 1 [Theobroma cacao]	IPR007587 (SIT4 phosphatase-associated protein family)	
Niben101Scf10613g00002.1	sp|A6MMB2|RPOC2_CHLSC	*-**	DNA-directed RNA polymerase subunit beta''	IPR007081 (RNA polymerase Rpb1, domain 5)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf01274g08013.1	AT3G10200.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=591	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf09209g02008.1	AT4G19900.1	***-	alpha 1,4-glycosyltransferase family protein LENGTH=644	IPR007577 (Glycosyltransferase, DXD sugar-binding motif), IPR007652 (Alpha 1,4-glycosyltransferase domain), IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf04259g01006.1	sp|Q823T2|DNAJ_CHLCV	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf03444g04001.1	sp|P57758|CTNS_ARATH	***-	Cystinosin homolog	IPR005282 (Lysosomal cystine transporter)	
Niben101Scf01313g00013.1	sp|P42327|ADH2_GEOSE	***-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf16066g00001.1	sp|Q38998|AKT1_ARATH	*-*-	Potassium channel AKT1	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf00109g04006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02030g04003.1	sp|P17156|HSP72_MOUSE	***-	Heat shock-related 70 kDa protein 2	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf00376g03015.1	ref|XP_007033814.1|	***-	RING/U-box superfamily protein, putative isoform 3 [Theobroma cacao] gb|EOY04740.1| RING/U-box superfamily protein, putative isoform 3 [Theobroma cacao]		
Niben101Scf00305g04010.1	sp|Q9ZPV9|SY112_ARATH	***-	Syntaxin-112	IPR010989 (t-SNARE)	GO:0005515 (protein binding), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf01756g01007.1	AT4G01770.1	***-	rhamnogalacturonan xylosyltransferase 1 LENGTH=361	IPR003388 (Reticulon), IPR005069 (Nucleotide-diphospho-sugar transferase), IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf00265g02006.1	sp|Q05967|PGLR_TOBAC	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00201g01002.1	sp|Q6XL73|DNJ39_ARATH	*-*-	Chaperone protein dnaJ 39	IPR001623 (DnaJ domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03111g00003.1	sp|Q99K82|SMOX_MOUSE	***-	Spermine oxidase	IPR002937 (Amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04598g00001.1	sp|Q9SY69|PPR29_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01436g03026.1	sp|P13676|ACPH_RAT	--*-	Acylamino-acid-releasing enzyme	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf30554g00009.1	sp|Q215H3|NUOH1_RHOPB	*-*-	NADH-quinone oxidoreductase subunit H 1	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf06193g02026.1	sp|Q8LDW9|XTH9_ARATH	*-*-	Xyloglucan endotransglucosylase/hydrolase protein 9	IPR013320 (Concanavalin A-like lectin/glucanase domain)	
Niben101Scf05231g02021.1	AT3G16060.1	****	ATP binding microtubule motor family protein LENGTH=684	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf17979g00003.1			Unknown protein		
Niben101Scf28250g00006.1	AT1G47410.1	***-	unknown protein; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=189		
Niben101Scf00177g06009.1	sp|Q941D6|HDA14_ARATH	*-*-	Histone deacetylase 14	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	
Niben101Scf22058g00007.1	emb|CDX95231.1|	*-*-	BnaC09g16390D [Brassica napus]		
Niben101Scf01535g00004.1	sp|A7SXK3|TMED_NEMVE	***-	Transmembrane emp24 domain-containing protein	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf05191g00013.1	AT4G15080.1	****	DHHC-type zinc finger family protein LENGTH=718	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf00854g01076.1			Unknown protein		
Niben101Scf01491g02002.1	ref|XP_003597012.1|	*-*-	TdcA1-ORF2 protein [Medicago truncatula]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf02027g01019.1	sp|Q9Y394|DHRS7_HUMAN	*-**	Dehydrogenase/reductase SDR family member 7	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01956g03007.1	sp|Q9LIG2|RLK6_ARATH	*-*-	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06042g06005.1			Unknown protein		
Niben101Scf04701g00003.1	sp|Q84P24|4CLL6_ARATH	***-	4-coumarate--CoA ligase-like 6	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00347g00012.1	sp|Q5JNJ5|ENL1_ORYSJ	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf09185g01002.1			Unknown protein		
Niben101Scf00751g06028.1	sp|Q8N7Q3|ZN676_HUMAN	*-*-	Zinc finger protein 676	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf10381g01012.1	sp|Q9LME2|SYCP1_ARATH	***-	Synaptonemal complex protein 1		
Niben101Scf13710g02002.1	AT2G18570.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=470	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf11247g00006.1	sp|Q4P0V4|PPID_USTMA	****	Peptidyl-prolyl cis-trans isomerase D	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR011990 (Tetratricopeptide-like helical domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0005515 (protein binding), GO:0006457 (protein folding)
Niben101Scf06826g07002.1	AT1G09780.1	*-**	Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent LENGTH=557	IPR006124 (Metalloenzyme), IPR011258 (BPG-independent PGAM, N-terminal)	GO:0003824 (catalytic activity), GO:0004619 (phosphoglycerate mutase activity), GO:0005737 (cytoplasm), GO:0006007 (glucose catabolic process), GO:0030145 (manganese ion binding), GO:0046872 (metal ion binding)
Niben101Scf01616g05004.1	AT1G79510.1	*-*-	Uncharacterized conserved protein (DUF2358) LENGTH=275		
Niben101Scf12266g07004.1	AT5G25360.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=169	IPR025124 (Domain of unknown function DUF4050)	
Niben101Scf14594g00003.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf18001g00007.1	AT1G07710.1	***-	Ankyrin repeat family protein LENGTH=543	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf02390g01010.1	gb|AAF67109.1|AF224060_1	--*-	chimeric variable surface lipoprotein [Mycoplasma bovis] VspC [Mycoplasma bovis]		
Niben101Scf07289g00001.1	AT1G64530.1	***-	Plant regulator RWP-RK family protein LENGTH=841	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain)	GO:0005515 (protein binding)
Niben101Scf05056g01011.1			Unknown protein		
Niben101Scf06341g00002.1	sp|B6ISW8|NUON_RHOCS	*-*-	NADH-quinone oxidoreductase subunit N		
Niben101Scf05226g02002.1	ref|XP_002510656.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF52843.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06736g04011.1	AT1G30860.1	*-*-	RING/U-box superfamily protein LENGTH=730		
Niben101Scf06221g04018.1			Unknown protein		
Niben101Scf01198g00002.1	ref|XP_007048006.1|	***-	Domain of Uncharacterized protein function, putative isoform 1 [Theobroma cacao] gb|EOX92163.1| Domain of Uncharacterized protein function, putative isoform 1 [Theobroma cacao]	IPR010369 (Protein of unknown function DUF966)	
Niben101Scf06778g06006.1	sp|D6R901|U17LL_HUMAN	*-**	Ubiquitin carboxyl-terminal hydrolase 17-like protein 21	IPR002893 (Zinc finger, MYND-type), IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf02952g00008.1	sp|O24146|4CL2_TOBAC	***-	4-coumarate--CoA ligase 2	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf18822g02003.1	AT4G19185.1	*-**	nodulin MtN21 /EamA-like transporter family protein LENGTH=398	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf05078g04014.1	gb|KFK36450.1|	****	catalytic hydrolase [Arabis alpina]	IPR006992 (Amidohydrolase 2)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Ctg13833g00001.1	sp|Q9LIG2|RLK6_ARATH	*-*-	Receptor-like protein kinase	IPR024788 (Malectin-like carbohydrate-binding domain)	
Niben101Scf04500g04003.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03536g02010.1	sp|Q2T9P4|NASP_BOVIN	*-*-	Nuclear autoantigenic sperm protein	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06311g01015.1	sp|Q9LMJ3|GDL1_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf10228g00003.1	sp|Q8RWU3|RVE8_ARATH	***-	Protein REVEILLE 8	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf11120g00008.1	sp|Q6LGH5|BETA_PHOPR	****	Oxygen-dependent choline dehydrogenase	IPR012132 (Glucose-methanol-choline oxidoreductase)	GO:0006066 (alcohol metabolic process), GO:0008812 (choline dehydrogenase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01628g00019.1	sp|B2VK57|RL16_ERWT9	*-*-	50S ribosomal protein L16	IPR000114 (Ribosomal protein L16), IPR001351 (Ribosomal protein S3, C-terminal), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf01037g01015.1	sp|Q8VH51|RBM39_MOUSE	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf14310g00014.1	sp|Q8GXL7|GAT24_ARATH	****	GATA transcription factor 24	IPR010399 (Tify), IPR010402 (CCT domain), IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02821g07007.1	sp|Q84Y01|ITPK1_MAIZE	****	Inositol-tetrakisphosphate 1-kinase 1	IPR008656 (Inositol-tetrakisphosphate 1-kinase)	GO:0000287 (magnesium ion binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0032957 (inositol trisphosphate metabolic process), GO:0047325 (inositol tetrakisphosphate 1-kinase activity), GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity), GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
Niben101Scf02530g05003.1	ref|XP_003606837.1|	*-*-	Arginine decarboxylase [Medicago truncatula]	IPR015421 (Pyridoxal phosphate-dependent transferase, major region, subdomain 1)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf07304g07012.1	sp|B7KPN8|ACSA_METC4	*-*-	Acetyl-coenzyme A synthetase	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf10309g01005.1	AT1G50310.1	****	sugar transporter 9 LENGTH=517	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00758g00003.1	sp|Q8GW29|LOG7_ARATH	***-	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf03694g05011.1	sp|Q43735|PER27_ARATH	****	Peroxidase 27	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf15381g00018.1			Unknown protein		
Niben101Scf05249g09008.1	sp|Q8GW80|FBL65_ARATH	*-*-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00163g19001.1	sp|Q9FX56|SOT8_ARATH	****	Cytosolic sulfotransferase 8	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf00663g05016.1	sp|Q9SVX4|FB205_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf04217g02002.1	sp|Q58CV5|SPX2_BOVIN	*-*-	Sugar phosphate exchanger 2	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf14636g01002.1	ref|NP_001118245.1|	--*-	lung seven transmembrane receptor-like protein [Arabidopsis thaliana] gb|AEC05395.1| lung seven transmembrane receptor-like protein [Arabidopsis thaliana]		
Niben101Scf02635g05009.1	sp|Q58445|RPOA1_METJA	*-**	DNA-directed RNA polymerase subunit A'	IPR015700 (DNA-directed RNA polymerase III subunit RPC1)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0032549 (ribonucleoside binding)
Niben101Scf02243g03001.1	sp|Q84TE6|NAC22_ARATH	*-*-	NAC domain-containing protein 21/22	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00470g00001.1	sp|O81829|GH35_ARATH	***-	Indole-3-acetic acid-amido synthetase GH3.5	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf04638g01009.1	sp|A6ZP47|DED1_YEAS7	****	ATP-dependent RNA helicase DED1	IPR001202 (WW domain), IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf16342g00004.1	sp|Q9LK24|FB327_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02145g07015.1	sp|Q9M1V3|PP296_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00376g03014.1	sp|Q09MB3|RK23_CITSI	*-*-	50S ribosomal protein L23, chloroplastic	IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00163g01011.1	sp|P51110|DFRA_VITVI	*-**	Dihydroflavonol-4-reductase	IPR016040 (NAD(P)-binding domain)	GO:0003854 (3-beta-hydroxy-delta5-steroid dehydrogenase activity), GO:0006694 (steroid biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf04052g00012.1	sp|Q9ZUW3|PP172_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR001464 (Annexin), IPR002885 (Pentatricopeptide repeat)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf06758g00013.1	ref|XP_007010390.1|	--*-	Retrotransp [Theobroma cacao]		
Niben101Scf01971g02002.1			Unknown protein		
Niben101Scf00188g00003.1	AT5G11420.1	***-	Protein of unknown function, DUF642 LENGTH=366	IPR006946 (Protein of unknown function DUF642)	
Niben101Scf19293g00004.1			Unknown protein		
Niben101Scf00739g03002.1	sp|Q94758|DYL1_SCHMA	*-*-	Dynein light chain	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Scf02475g08023.1	gb|AAL67585.1|AC018929_7	*-*-	my OsJ_32580 [Oryza sativa Japonica Group]		
Niben101Scf05437g06022.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05820g01008.1	sp|Q5E898|RL18_VIBF1	--*-	50S ribosomal protein L18	IPR005484 (Ribosomal protein L18/L5)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf25930g00021.1	sp|Q9C7F5|NTF2_ARATH	***-	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2)	
Niben101Scf05692g00006.1	gb|ACX55016.1|	***-	pG1 protein [Bacillus amyloliquefaciens]		
Niben101Scf09659g01017.1	sp|Q66HG1|DMTF1_RAT	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf09668g00014.1			Unknown protein		
Niben101Scf00311g02003.1	ref|XP_002515459.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF46908.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06603g00001.1			Unknown protein		
Niben101Scf02688g01014.1	sp|Q8W4J9|RPP8_ARATH	*-*-	Disease resistance protein RPP8		
Niben101Scf21829g00002.1	AT1G08470.1	****	strictosidine synthase-like 3 LENGTH=390	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf03064g03010.1	sp|A4GSN8|NUA_ARATH	*-*-	Nuclear-pore anchor		
Niben101Scf03200g01007.1	gb|KEH44396.1|	*-*-	MFS transporter [Medicago truncatula]		
Niben101Scf01056g01001.1	sp|Q15415|RBY1F_HUMAN	--**	RNA-binding motif protein, Y chromosome, family 1 member F/J	IPR000061 (SWAP/Surp), IPR003034 (SAP domain), IPR006569 (CID domain), IPR008942 (ENTH/VHS), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR013170 (mRNA splicing factor, Cwf21)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0006396 (RNA processing)
Niben101Scf08603g03004.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf03403g01026.1	AT4G24490.1	****	RAB geranylgeranyl transferase alpha subunit 1 LENGTH=678	IPR001611 (Leucine-rich repeat), IPR002088 (Protein prenyltransferase, alpha subunit), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding), GO:0008318 (protein prenyltransferase activity), GO:0018342 (protein prenylation)
Niben101Scf02537g18002.1	ref|XP_002513964.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF48547.1| conserved hypothetical protein [Ricinus communis]	IPR008004 (Uncharacterised protein family UPF0503)	
Niben101Scf05032g01010.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf00675g04003.1	AT3G13226.1	*-*-	regulatory protein RecX family protein LENGTH=382	IPR003783 (Regulatory protein RecX), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0006282 (regulation of DNA repair)
Niben101Scf00859g04012.1	sp|Q5L0J5|RASP_GEOKA	***-	Zinc metalloprotease RasP	IPR004387 (Peptidase M50, putative membrane-associated zinc metallopeptidase)	GO:0004222 (metalloendopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf07166g01012.1	sp|Q40702|MADS2_ORYSJ	-**-	MADS-box transcription factor 2	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00851g06020.1	sp|Q9SH60|PP103_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf12321g01024.1	sp|Q9SS37|RTNLH_ARATH	***-	Reticulon-like protein B8	IPR003388 (Reticulon)	
Niben101Scf04124g05021.1	sp|P53632|PAP2_YEAST	*-*-	Poly(A) RNA polymerase protein 2	IPR002058 (PAP/25A-associated), IPR002934 (Nucleotidyl transferase domain)	GO:0016779 (nucleotidyltransferase activity)
Niben101Scf02814g04009.1	sp|Q92095|CP1A1_OPSTA	--*-	Cytochrome P450 1A1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03224g11008.1	sp|Q9LFC5|PP360_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00270g05019.1	sp|Q54GN8|NSA2_DICDI	***-	Ribosome biogenesis protein NSA2 homolog	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	
Niben101Scf09021g00006.1	sp|Q93ZQ5|SPXM3_ARATH	****	SPX domain-containing membrane protein	IPR004331 (SPX, N-terminal), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf06436g04005.1	sp|Q6RSN5|DNAJ_RHIRD	***-	Chaperone protein DnaJ	IPR012724 (Chaperone DnaJ)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0009408 (response to heat), GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf10981g00003.1			Unknown protein		
Niben101Scf00083g01002.1			Unknown protein		
Niben101Scf07019g02004.1	AT3G51240.1	***-	flavanone 3-hydroxylase LENGTH=358	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf09592g00006.1	sp|Q96499|RL44_GOSHI	***-	60S ribosomal protein L44	IPR000552 (Ribosomal protein L44e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00096g04003.1	sp|Q9H2J4|PDCL3_HUMAN	***-	Phosducin-like protein 3	IPR012336 (Thioredoxin-like fold)	
Niben101Scf05440g00014.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08242g01019.1	AT1G28710.1	***-	Nucleotide-diphospho-sugar transferase family protein LENGTH=340	IPR005069 (Nucleotide-diphospho-sugar transferase)	
Niben101Scf10250g00008.1	sp|Q9XJ54|NTF2_ORYSJ	--**	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf07270g00001.1	sp|P38166|SFT2_YEAST	*-**	Protein transport protein SFT2	IPR007305 (Vesicle transport protein, Got1/SFT2-like)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf06267g00004.1	sp|Q56XU4|C3H6_ARATH	*-*-	Zinc finger CCCH domain-containing protein 6		
Niben101Scf33342g00003.1	gb|AES73591.2|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf12885g02008.1	emb|CDX74218.1|	--*-	BnaA03g28290D [Brassica napus]	IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf02373g05008.1	sp|Q9SYT0|ANXD1_ARATH	***-	Annexin D1	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf02124g00001.1	sp|Q55721|FBT_SYNY3	*-*-	Folate-biopterin transporter	IPR004324 (Folate-biopterin transporter), IPR020846 (Major facilitator superfamily domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf08776g02022.1	AT4G32760.2	***-	ENTH/VHS/GAT family protein LENGTH=676	IPR004152 (GAT domain)	GO:0005622 (intracellular), GO:0006886 (intracellular protein transport)
Niben101Scf03915g04009.1	AT2G03200.1	*-*-	Eukaryotic aspartyl protease family protein LENGTH=461	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05102g08002.1	sp|O42954|MBX1_SCHPO	--*-	MADS-box transcription factor 1	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf02471g03003.1	sp|Q9TKV5|NU1C_NEPOL	--*-	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic		
Niben101Scf10732g01016.1			Unknown protein		
Niben101Scf01756g02004.1	sp|O82352|RTNLE_ARATH	***-	Reticulon-like protein B5	IPR003388 (Reticulon)	
Niben101Scf01943g10015.1	sp|O61125|STK4_DICDI	****	Serine/threonine-protein kinase 4 homolog A	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08562g00009.1	AT1G23480.1	***-	cellulose synthase-like A3 LENGTH=556	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf00560g11002.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf03673g02015.1	AT2G42005.1	***-	Transmembrane amino acid transporter family protein LENGTH=413	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf04963g05004.1			Unknown protein		
Niben101Scf02929g01020.1	ref|XP_002530829.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF31542.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05644g01006.1	AT2G36350.1	****	Protein kinase superfamily protein LENGTH=949	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08020g06003.1	gb|ABY88526.1|	***-	NHL1, partial [Arabidopsis thaliana]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf00611g11029.1	AT5G57010.1	***-	calmodulin-binding family protein LENGTH=495		
Niben101Scf04232g00005.1	sp|O22714|PPR86_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf12639g00001.1	sp|Q9LDE4|ERF83_ARATH	*-**	Ethylene-responsive transcription factor 7	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01612g02008.1			Unknown protein		
Niben101Scf02694g06022.1	sp|O48520|DPOD2_ARATH	*-*-	DNA polymerase delta small subunit	IPR024826 (DNA polymerase delta/II small subunit family)	
Niben101Scf02749g05033.1	emb|CDY25682.1|	***-	BnaC03g69930D [Brassica napus]	IPR007650 (Zf-FLZ domain)	
Niben101Scf02840g00004.1	sp|Q9ZNU2|NAC18_ARATH	*-*-	NAC domain-containing protein 18	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00621g08001.1	AT3G06270.1	****	Protein phosphatase 2C family protein LENGTH=348	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf02085g27004.1	AT1G29690.1	*-*-	MAC/Perforin domain-containing protein LENGTH=561		
Niben101Scf00165g06001.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf01236g04003.1	sp|Q9U9Y8|NLK_CAEEL	--**	Serine/threonine kinase NLK	IPR000409 (BEACH domain), IPR011009 (Protein kinase-like domain), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06261g01001.1	sp|Q9SND4|HEC2_ARATH	*-*-	Transcription factor HEC2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf28925g00001.1	sp|Q9SUT9|RTNLB_ARATH	***-	Reticulon-like protein B2	IPR003388 (Reticulon)	
Niben101Scf00457g05012.1	sp|O75179|ANR17_HUMAN	*-*-	Ankyrin repeat domain-containing protein 17	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf03468g03019.1	ref|WP_026721759.1|	*-*-	glycine cleavage system protein T [Fischerella sp. PCC 9431]	IPR006222 (Glycine cleavage T-protein-like, N-terminal)	
Niben101Scf02907g07020.1	sp|Q99KK1|REEP3_MOUSE	*-*-	Receptor expression-enhancing protein 3	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf02904g03003.1	AT3G57550.2	***-	guanylate kinase LENGTH=390	IPR008144 (Guanylate kinase-like), IPR008145 (Guanylate kinase/L-type calcium channel beta subunit), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015915 (Kelch-type beta propeller), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf02844g13004.1	sp|Q5FVN2|TM41B_RAT	***-	Transmembrane protein 41B		
Niben101Scf04558g02006.1	ref|NP_001173748.1|	--*-	[Oryza sativa Japonica Group] dbj|BAH92476.1| [Oryza sativa Japonica Group]		
Niben101Scf04555g02006.1	AT4G21380.1	*-**	receptor kinase 3 LENGTH=850	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01055g02015.1	AT5G13990.1	****	exocyst subunit exo70 family protein C2 LENGTH=695	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf11424g02004.1	sp|P41558|RPOB2_METVS	****	DNA-directed RNA polymerase subunit B''	IPR007644 (RNA polymerase, beta subunit, protrusion), IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf00551g04006.1	sp|Q8GYD2|MND1_ARATH	***-	Meiotic nuclear division protein 1 homolog	IPR005647 (Meiotic nuclear division protein 1)	
Niben101Scf01733g03001.1	sp|Q9LXH0|NRT26_ARATH	***-	High affinity nitrate transporter 2.6	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00411g00005.1	ref|NP_175497.1|	*-*-	aminotransferase-like, plant mobile domain family protein [Arabidopsis thaliana] hypothetical protein [Arabidopsis thaliana] gb|AEE32594.1| aminotransferase-like, plant mobile domain family protein [Arabidopsis thaliana]	IPR006904 (Protein of unknown function DUF716 (TMEM45)), IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf16556g00009.1	sp|P0DH90|FRIGI_ARATH	***-	Protein FRIGIDA	IPR012474 (Frigida-like)	
Niben101Scf01148g00017.1	ref|XP_007049519.1|	*-*-	Mediator of RNA polymerase II transcription subunit 19 [Theobroma cacao] gb|EOX93676.1| Mediator of RNA polymerase II transcription subunit 19 [Theobroma cacao]		
Niben101Scf09291g00001.1			Unknown protein		
Niben101Scf05349g01040.1	sp|Q6R2K1|SRF5_ARATH	*-*-	Protein STRUBBELIG-RECEPTOR FAMILY 5	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02407g13009.1	gb|AAF14244.1|AF110228_1	*-*-	nuclear RNA binding protein A [Spinacia oleracea]	IPR006861 (Hyaluronan/mRNA-binding protein), IPR019084 (Stm1, N-terminal)	
Niben101Scf03539g00003.1	AT3G22270.1	***-	Topoisomerase II-associated protein PAT1 LENGTH=782		
Niben101Scf00951g01013.1	sp|Q5E9F6|VPS72_BOVIN	*-*-	Vacuolar protein sorting-associated protein 72 homolog	IPR008895 (YL1 nuclear), IPR013272 (YL1 nuclear, C-terminal)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03254g02007.1	sp|Q9ESJ0|XPO4_MOUSE	*-*-	Exportin-4		
Niben101Scf01267g13007.1	ref|NP_565550.1|	****	protein RER1C1 [Arabidopsis thaliana] RecName: Full=Protein RER1C; Short=AtRER1C [Arabidopsis thaliana] dbj|BAA33862.1| AtRER1C [Arabidopsis thaliana] gb|AAL47450.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAB87102.2| putative integral membrane protein [Arabidopsis thaliana] gb|AAM19906.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAM63458.1| putative integral membrane protein [Arabidopsis thaliana] gb|AEC07439.1| protein RER1C1 [Arabidopsis thaliana]	IPR004932 (Retrieval of early ER protein Rer1)	GO:0016021 (integral component of membrane)
Niben101Scf09315g01006.1	sp|Q9HFF5|PDS5_SCHPO	--*-	Sister chromatid cohesion protein pds5	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf03309g06004.1	AT2G34090.2	***-	maternal effect embryo arrest 18 LENGTH=471	IPR002882 (LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052)	
Niben101Scf10415g00004.1	AT5G05690.1	***-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf25073g00002.1	sp|Q9CAJ0|P2C16_ARATH	*-*-	Protein phosphatase 2C 16	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf07119g00004.1	ref|XP_007013693.1|	*-*-	Kinase superfamily protein with octic with octicosapeptide/Phox/Bem1p domain, putative isoform 4 [Theobroma cacao]		
Niben101Scf08195g07027.1	AT1G78580.1	****	trehalose-6-phosphate synthase LENGTH=942	IPR001830 (Glycosyl transferase, family 20), IPR003337 (Trehalose-phosphatase), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process)
Niben101Scf33567g00018.1	sp|F4K657|BL1S2_ARATH	***-	Biogenesis of lysosome-related organelles complex 1 subunit 2	IPR019269 (Biogenesis of lysosome-related organelles complex-1, subunit 2)	
Niben101Scf04053g00007.1	sp|Q8RU31|MAD21_ORYSJ	*-*-	MADS-box transcription factor 21	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf06684g03027.1	AT4G00340.1	****	receptor-like protein kinase 4 LENGTH=818	IPR000858 (S-locus glycoprotein), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf05880g02002.1			Unknown protein	IPR013101 (Leucine-rich repeat 2)	
Niben101Scf04375g02016.1	sp|A7I841|PSB_METB6	*-**	Proteasome subunit beta	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf00109g07025.1	emb|CDX74323.1|	***-	BnaA03g27240D [Brassica napus]		
Niben101Scf00503g02001.1			Unknown protein		
Niben101Scf05238g01013.1	AT2G17820.1	*-**	histidine kinase 1 LENGTH=1207	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf20077g00017.1	sp|Q17QU7|DHR13_BOVIN	****	Dehydrogenase/reductase SDR family member 13	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf06342g03003.1	sp|Q56WF8|SCP48_ARATH	****	Serine carboxypeptidase-like 48	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01933g14003.1	sp|Q0IH40|DNLZ_XENLA	*-**	DNL-type zinc finger protein	IPR007853 (Zinc finger, DNL-type), IPR024158 (Mitochondrial import protein TIM15)	GO:0008270 (zinc ion binding)
Niben101Scf08531g03029.1			Unknown protein		
Niben101Scf00693g02013.1	ref|XP_007049405.1|	***-	Cell wall protein AWA1 isoform 3 [Theobroma cacao] gb|EOX93562.1| Cell wall protein AWA1 isoform 3 [Theobroma cacao]		
Niben101Scf03500g02001.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04947g00004.1	prf||1808322A	*-**	stearoyl-acyl carrier protein desaturase	IPR005067 (Fatty acid desaturase, type 2), IPR009078 (Ferritin-like superfamily)	GO:0006631 (fatty acid metabolic process), GO:0016491 (oxidoreductase activity), GO:0045300 (acyl-[acyl-carrier-protein] desaturase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03000g00021.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf00298g02003.1	AT1G48480.1	****	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03602g02007.1	sp|E1U332|ALL12_OLEEU	*-*-	Isoflavone reductase-like protein		
Niben101Scf01854g00026.1	ref|WP_023072381.1|	--*-	alpha-amylase alpha-mannosidase [Leptolyngbya sp. Heron Island J] gb|ESA36859.1| alpha-amylase alpha-mannosidase [Leptolyngbya sp. Heron Island J]		
Niben101Scf03036g07014.1	sp|P46903|NATA_BACSU	*-**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf06661g04005.1	AT1G51130.1	****	Nse4, component of Smc5/6 DNA repair complex LENGTH=403	IPR014854 (Non-structural maintenance of chromosome element 4, C-terminal), IPR027786 (Nse4/EID family)	GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0030915 (Smc5-Smc6 complex)
Niben101Scf00290g01019.1	sp|Q7EZT1|NAC67_ORYSJ	*-*-	NAC domain-containing protein 67	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04955g01002.1	AT1G30040.1	***-	gibberellin 2-oxidase LENGTH=341	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03643g02043.1	sp|Q06RD1|PSAA_JASNU	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00953g00018.1	sp|B3H6C3|FB311_ARATH	--*-	F-box protein	IPR005174 (Protein of unknown function DUF295)	
Niben101Scf09989g01006.1	AT2G01290.1	****	ribose-5-phosphate isomerase 2 LENGTH=265	IPR004788 (Ribose 5-phosphate isomerase, type A)	GO:0004751 (ribose-5-phosphate isomerase activity), GO:0009052 (pentose-phosphate shunt, non-oxidative branch)
Niben101Scf03563g00032.1	sp|P70362|UFD1_MOUSE	*-**	Ubiquitin fusion degradation protein 1 homolog	IPR004854 (Ubiquitin fusion degradation protein UFD1)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf03747g03001.1	sp|Q9C9V6|Y1790_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain), IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0005515 (protein binding), GO:0009958 (positive gravitropism)
Niben101Scf02622g09003.1	AT5G43400.1	***-	Uncharacterised conserved protein UCP015417, vWA LENGTH=655	IPR002035 (von Willebrand factor, type A), IPR024553 (Domain of unknown function DUF2828)	
Niben101Scf01002g13019.1	sp|Q8LGR0|CHE1_CHEAL	--*-	Pollen allergen Che a 1		
Niben101Scf01281g10032.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf00960g02006.1	sp|Q6NQB7|B3GT7_ARATH	*-**	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf16451g00009.1			Unknown protein		
Niben101Scf01696g03007.1	sp|Q02243|WIN_SOYBN	***-	Wound-induced protein	IPR009009 (RlpA-like double-psi beta-barrel domain)	GO:0042742 (defense response to bacterium), GO:0050832 (defense response to fungus)
Niben101Scf00063g10001.1	sp|Q9C554|EXPA1_ARATH	***-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf02337g00014.1	sp|Q08506|ACCO1_PETHY	***-	1-aminocyclopropane-1-carboxylate oxidase 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01521g01018.1	sp|B3H4F1|SP1L1_ARATH	*-*-	Protein SPIRAL1-like 1		
Niben101Scf22403g00004.1	sp|Q9C8T7|PP101_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00021g00004.1	sp|P49755|TMEDA_HUMAN	***-	Transmembrane emp24 domain-containing protein 10	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf14799g02001.1	sp|P34114|PHS2_DICDI	*-**	Glycogen phosphorylase 2	IPR000811 (Glycosyl transferase, family 35)	GO:0005975 (carbohydrate metabolic process), GO:0008184 (glycogen phosphorylase activity)
Niben101Scf12361g03010.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf02606g05048.1	ref|XP_005710276.1|	--**	ATP dependant DNA helicase [Chondrus crispus] emb|CDF39982.1| ATP dependant DNA helicase [Chondrus crispus]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf10464g00015.1	sp|Q8LFJ5|T112A_ARATH	*-*-	Multifunctional methyltransferase subunit TRM112-like protein		
Niben101Scf03114g01003.1	AT5G52780.1	*-*-	Protein of unknown function (DUF3464) LENGTH=168	IPR021855 (Protein of unknown function DUF3464)	
Niben101Scf08203g00023.1			Unknown protein		
Niben101Scf02386g01004.1	sp|Q5REC9|RAB8B_PONAB	***-	Ras-related protein Rab-8B	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00873g02003.1	AT2G20670.1	***-	Protein of unknown function (DUF506) LENGTH=294	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf02379g00004.1	AT2G27770.1	***-	Plant protein of unknown function (DUF868) LENGTH=320	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf01731g00006.1	AT4G22810.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=324	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf03764g00006.1	AT4G34760.1	***-	SAUR-like auxin-responsive protein family LENGTH=107	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02746g07005.1	sp|Q66WV0|RBR1_NICBE	***-	Retinoblastoma-related protein 1	IPR024599 (Retinoblastoma-associated protein, N-terminal), IPR028309 (Retinoblastoma protein family)	GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0007049 (cell cycle), GO:0051726 (regulation of cell cycle)
Niben101Scf07137g00016.1			Unknown protein		
Niben101Scf05295g04008.1	sp|Q98PE4|FTSH_MYCPU	*-**	ATP-dependent zinc metalloprotease FtsH	IPR000642 (Peptidase M41), IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis)
Niben101Scf02455g00009.1	AT1G80450.1	***-	VQ motif-containing protein LENGTH=177	IPR008889 (VQ)	
Niben101Scf01001g07015.1	sp|O49508|FB237_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01903g00004.1	AT1G69690.1	*-*-	TCP family transcription factor LENGTH=325	IPR005333 (Transcription factor, TCP)	
Niben101Scf01005g02017.1	sp|Q9M7R0|ALL8_OLEEU	*-**	Calcium-binding allergen Ole e 8	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf34361g00002.1	ref|XP_007041024.1|	***-	ARM repeat superfamily protein, putative isoform 3 [Theobroma cacao] gb|EOX96855.1| ARM repeat superfamily protein, putative isoform 3 [Theobroma cacao]		
Niben101Scf05301g00015.1	sp|P40690|ALKE_BABBO	*-*-	Aldo-keto reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf07899g00005.1	sp|O94514|NOP56_SCHPO	***-	Nucleolar protein 56	IPR002687 (Nop domain), IPR012974 (NOP5, N-terminal), IPR012976 (NOSIC)	
Niben101Scf09310g02013.1	sp|P26357|TBP_SOLTU	****	TATA-box-binding protein	IPR000814 (TATA-box binding protein)	GO:0003677 (DNA binding), GO:0006352 (DNA-templated transcription, initiation)
Niben101Scf02451g03010.1	sp|Q9FIE3|VIN3_ARATH	*-*-	Protein VERNALIZATION INSENSITIVE 3	IPR013783 (Immunoglobulin-like fold)	GO:0005515 (protein binding)
Niben101Scf13621g01005.1	AT2G46495.1	***-	RING/U-box superfamily protein LENGTH=372		
Niben101Scf02785g00005.1	sp|Q8K4T1|SIA8F_MOUSE	*-**	Alpha-2,8-sialyltransferase 8F	IPR001675 (Glycosyl transferase, family 29)	GO:0006486 (protein glycosylation), GO:0008373 (sialyltransferase activity), GO:0030173 (integral component of Golgi membrane)
Niben101Scf01141g02002.1	gb|ABS79378.1|	***-	At4g40080-like protein [Arabidopsis lyrata subsp. petraea]	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding)
Niben101Scf04639g06007.1	sp|Q01520|EF1A_PODAS	****	Elongation factor 1-alpha	IPR004539 (Translation elongation factor EF1A, eukaryotic/archaeal), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005737 (cytoplasm), GO:0006414 (translational elongation)
Niben101Scf01582g08010.1	AT5G17530.3	***-	phosphoglucosamine mutase family protein LENGTH=614	IPR005841 (Alpha-D-phosphohexomutase superfamily)	GO:0005975 (carbohydrate metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf06621g02010.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03953g02018.1	sp|B4SKV8|RS12_STRM5	*-**	30S ribosomal protein S12	IPR000440 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3), IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0015935 (small ribosomal subunit), GO:0055114 (oxidation-reduction process)
Niben101Scf05488g00016.1	sp|A9A2U7|PSB2_NITMS	*-**	Proteasome subunit beta 2	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf02014g00023.1	sp|Q5ZMP3|T184C_CHICK	--*-	Transmembrane protein 184C	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184)	
Niben101Scf04675g00002.1	gb|AAU90303.2|	***-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf01765g02006.1	sp|P46825|KLC_DORPE	--*-	Kinesin light chain	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf10085g01003.1	ref|WP_002783248.1|	****	Phot [Microcystis aeruginosa PCC 9806]	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf00348g01011.1			Unknown protein		
Niben101Scf14883g03003.1	sp|Q8CX33|GLMS_SHEON	****	Glutamine--fructose-6-phosphate aminotransferase [isomerizing]	IPR005855 (Glucosamine-fructose-6-phosphate aminotransferase, isomerising)	GO:0004360 (glutamine-fructose-6-phosphate transaminase (isomerizing) activity), GO:0005975 (carbohydrate metabolic process), GO:0016051 (carbohydrate biosynthetic process), GO:0030246 (carbohydrate binding)
Niben101Scf05439g02050.1	gb|ACI02101.1|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Isoetes engelmannii]		
Niben101Scf03160g02008.1	sp|Q652P9|GL93_ORYSJ	***-	Germin-like protein 9-3	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf04422g06003.1	AT3G58480.1	***-	calmodulin-binding family protein LENGTH=575		
Niben101Scf00283g00006.1	sp|Q80XC2|TRM61_MOUSE	--**	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A	IPR014816 (tRNA (1-methyladenosine) methyltransferase catalytic subunit Gcd14), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0016429 (tRNA (adenine-N1-)-methyltransferase activity), GO:0030488 (tRNA methylation), GO:0031515 (tRNA (m1A) methyltransferase complex)
Niben101Scf07788g02007.1	sp|Q9C5D2|FBL4_ARATH	***-	F-box/LRR-repeat protein 4	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf04444g03001.1	sp|A0LRL9|RS10_ACIC1	***-	30S ribosomal protein S10	IPR001848 (Ribosomal protein S10), IPR027486 (Ribosomal protein S10 domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05084g00006.1	sp|Q9XEG7|RS3A_TORRU	***-	40S ribosomal protein S3a	IPR001593 (Ribosomal protein S3Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00963g05005.1	sp|O04036|ERD6_ARATH	*-**	Sugar transporter ERD6	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf05848g04013.1	sp|Q00624|ASOL_BRANA	*-*-	L-ascorbate oxidase homolog	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03038g17023.1	sp|P48599|IF4E1_ORYSJ	*-**	Eukaryotic translation initiation factor 4E-1	IPR001040 (Translation Initiation factor eIF- 4e), IPR023398 (Translation Initiation factor eIF- 4e-like  domain)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0006413 (translational initiation)
Niben101Scf05304g05006.1	emb|CDX79213.1|	*-*-	BnaC06g20900D [Brassica napus]	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf04385g00005.1	gb|ADP94885.1|	*-*-	auxin/aluminum responsive-like protein [Picea sitchensis]	IPR024286 (Domain of unknown function DUF3700)	
Niben101Scf04551g04015.1	AT1G19730.1	***-	Thioredoxin superfamily protein LENGTH=119	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03832g00003.1	sp|Q7M1E7|PGLR2_CHAOB	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf35013g00007.1	sp|A4D1S5|RAB19_HUMAN	*-*-	Ras-related protein Rab-19	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf05588g04009.1	AT1G76640.1	****	Calcium-binding EF-hand family protein LENGTH=159	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf04574g07001.1	sp|Q8GWK2|AP2L4_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01341g03003.1	sp|Q1G3M2|LYRM9_ARATH	***-	LYR motif-containing protein	IPR008011 (Complex 1 LYR protein)	
Niben101Scf06369g05018.1	AT4G11440.1	***-	Mitochondrial substrate carrier family protein LENGTH=628	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf00096g01009.1	ref|NP_001062209.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf06424g02004.1	sp|Q9H211|CDT1_HUMAN	--*-	DNA replication factor Cdt1	IPR014939 (CDT1 Geminin-binding domain-like)	
Niben101Scf04312g03010.1	gb|KEH32530.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00862g01017.1	AT5G20990.1	****	molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) LENGTH=670	IPR001453 (Molybdopterin binding domain), IPR005110 (MoeA, N-terminal and linker domain), IPR005111 (MoeA, C-terminal, domain IV)	GO:0006777 (Mo-molybdopterin cofactor biosynthetic process), GO:0032324 (molybdopterin cofactor biosynthetic process)
Niben101Scf01804g00082.1	sp|B6ISW8|NUON_RHOCS	*-*-	NADH-quinone oxidoreductase subunit N		
Niben101Scf02853g06020.1	sp|C6DDM6|MSRA_PECCP	****	Peptide methionine sulfoxide reductase MsrA	IPR002569 (Peptide methionine sulphoxide reductase MsrA), IPR028427 (Peptide methionine sulfoxide reductase)	GO:0006979 (response to oxidative stress), GO:0008113 (peptide-methionine (S)-S-oxide reductase activity), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0030091 (protein repair), GO:0055114 (oxidation-reduction process)
Niben101Scf08618g01002.1	sp|P29520|EF1A_BOMMO	****	Elongation factor 1-alpha	IPR004539 (Translation elongation factor EF1A, eukaryotic/archaeal), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005737 (cytoplasm), GO:0006414 (translational elongation)
Niben101Scf00985g06010.1	AT1G49160.2	*-*-	Protein kinase superfamily protein LENGTH=557	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00117g02019.1	sp|B2S0M0|DNAK_BORHD	***-	Chaperone protein DnaK	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf04455g04013.1	sp|Q6D5W6|MDTK_PECAS	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf10423g02010.1	AT1G05280.1	***-	Protein of unknown function (DUF604) LENGTH=461	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf06974g00016.1	AT1G70280.2	***-	NHL domain-containing protein LENGTH=509	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0005515 (protein binding)
Niben101Scf02197g01020.1	AT1G77460.1	*-**	Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein LENGTH=2136	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00890g00002.1	sp|Q6NPT8|PP2B1_ARATH	***-	F-box protein PP2-B1	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Ctg15942g00001.1	sp|Q5BIY5|RN145_XENLA	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf16773g02004.1			Unknown protein		
Niben101Scf01886g00007.1	gb|KEH36884.1|	***-	F-box plant-like protein, putative [Medicago truncatula]	IPR027949 (Petal formation-expressed)	
Niben101Scf01978g00015.1	gb|ABF94077.1|	--*-	expressed protein [Oryza sativa Japonica Group]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf05230g00001.1	sp|Q9ZVX5|PP156_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06677g01003.1	sp|Q9CA23|UFM1_ARATH	***-	Ubiquitin-fold modifier 1	IPR005375 (Ubiquitin-fold modifier 1), IPR029071 (Ubiquitin-related domain)	
Niben101Scf30521g00001.1	sp|Q9LPC5|BIG3_ARATH	*-**	Brefeldin A-inhibited guanine nucleotide-exchange protein 3	IPR000904 (Sec7 domain)	GO:0005086 (ARF guanyl-nucleotide exchange factor activity), GO:0032012 (regulation of ARF protein signal transduction)
Niben101Scf07531g01004.1	sp|Q9LUM1|LOR11_ARATH	***-	Protein LURP-one-related 11	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf05301g00016.1	AT1G03445.1	****	Serine/threonine protein phosphatase family protein LENGTH=793	IPR012391 (Serine/threonine protein phosphatase, BSU1), IPR029052 (Metallo-dependent phosphatase-like)	GO:0004721 (phosphoprotein phosphatase activity), GO:0005506 (iron ion binding), GO:0005515 (protein binding), GO:0016787 (hydrolase activity), GO:0030145 (manganese ion binding)
Niben101Scf02644g00003.1	AT5G26780.3	****	serine hydroxymethyltransferase 2 LENGTH=533	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf05100g01012.1	sp|Q9CQM5|TXD17_MOUSE	***-	Thioredoxin domain-containing protein 17	IPR010357 (Protein of unknown function DUF953, thioredoxin-like), IPR012336 (Thioredoxin-like fold)	
Niben101Scf01451g05007.1	sp|Q9ZVE0|ORN_ARATH	***-	Oligoribonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf08341g11013.1	sp|Q3V096|ANR42_MOUSE	*-*-	Ankyrin repeat domain-containing protein 42	IPR000641 (CbxX/CfqX), IPR020683 (Ankyrin repeat-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf00479g01004.1	sp|Q6NRL1|AGAP1_XENLA	*-**	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf10436g02002.1	sp|Q55BV5|PRS4_DICDI	*-*-	26S protease regulatory subunit 4 homolog	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf07206g01002.1			Unknown protein		
Niben101Scf08308g04016.1	gb|AGL09506.1|	***-	male gametophyte defective 1, partial [Thottea sp. JN-2013]		
Niben101Scf04267g00014.1	sp|O43345|ZN208_HUMAN	*-*-	Zinc finger protein 208	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00073g04009.1	sp|Q9SV12|HFA7A_ARATH	--*-	Heat stress transcription factor A-7a	IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf00109g02002.1	gb|EMT00535.1|	*-*-	Translocon-associated protein subunit beta [Aegilops tauschii]	IPR008856 (Translocon-associated protein subunit beta)	GO:0005783 (endoplasmic reticulum), GO:0016021 (integral component of membrane)
Niben101Scf11743g00009.1	sp|Q9FXI9|GUN2_ARATH	***-	Endoglucanase 2	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02367g05029.1	sp|Q9ZUA2|PP141_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR021869 (Ribonuclease Zc3h12a-like)	
Niben101Scf23111g00012.1	gb|AIT42219.1|	***-	metallocarboxypeptidase inhibitor [Solanum tuberosum]	IPR004231 (Carboxypeptidase A inhibitor-like)	
Niben101Scf10498g00018.1	AT5G19855.1	***-	Chaperonin-like RbcX protein LENGTH=203	IPR003435 (Chaperonin-like RbcX)	
Niben101Scf00774g01030.1	sp|Q3T0Z8|RUXF_BOVIN	***-	Small nuclear ribonucleoprotein F	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf00157g03005.1	sp|P87027|SPG1_SCHPO	--*-	Septum-promoting GTP-binding protein 1		
Niben101Scf05191g00014.1	AT3G53130.1	***-	Cytochrome P450 superfamily protein LENGTH=539	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02194g00004.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00047g03003.1	sp|B7UIL2|GLND_ECO27	--*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf00901g01012.1	AT1G07890.3	****	ascorbate peroxidase 1 LENGTH=250	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00165g00008.1	AT3G52500.1	***-	Eukaryotic aspartyl protease family protein LENGTH=469	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00229g03001.1	ref|XP_010103716.1|	--*-	Sentrin-specific protease 1 [Morus notabilis] gb|EXB96858.1| Sentrin-specific protease 1 [Morus notabilis]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf10798g00005.1	sp|P41777|NOLC1_RAT	*-*-	Nucleolar and coiled-body phosphoprotein 1	IPR006594 (LisH dimerisation motif), IPR007718 (SRP40, C-terminal)	GO:0005515 (protein binding)
Niben101Scf11491g00007.1	sp|Q14498|RBM39_HUMAN	*-**	RNA-binding protein 39	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf04654g02010.1	sp|O48682|FH4_ARATH	***-	Formin-like protein 4	IPR010304 (Survival motor neuron), IPR015425 (Formin, FH2 domain)	GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006397 (mRNA processing)
Niben101Scf01376g03021.1	emb|CDY19669.1|	--*-	BnaC09g29250D [Brassica napus]		
Niben101Scf03337g03012.1	AT4G00165.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=128	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf05929g02013.1	AT1G04530.1	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=310	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05381g03005.1	AT1G22650.1	*-*-	Plant neutral invertase family protein LENGTH=534	IPR024746 (Glycosyl hydrolase family 100)	GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf09089g00001.1	ref|XP_007035941.1|	*-*-	R isoform 1 [Theobroma cacao]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf00410g02011.1	ref|XP_007024853.1|	--*-	Spc97 / Spc98 family of spindle pole body component, putative isoform 2 [Theobroma cacao] gb|EOY27475.1| Spc97 / Spc98 family of spindle pole body component, putative isoform 2 [Theobroma cacao]		
Niben101Scf05959g00016.1	AT5G10370.1	*-**	helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related LENGTH=1775	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf00704g04019.1	sp|Q5R891|LNP_PONAB	***-	Protein lunapark	IPR019273 (Domain of unknown function DUF2296)	
Niben101Scf03191g04001.1	AT1G03230.1	***-	Eukaryotic aspartyl protease family protein LENGTH=434	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06655g00015.1	sp|P42328|ADH3_GEOSE	*-*-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01042g03010.1	ref|XP_002532981.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29405.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11138g01008.1	sp|Q8GWK2|AP2L4_ARATH	****	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09133g03023.1			Unknown protein		
Niben101Scf00131g01020.1	sp|P55200|KMT2A_MOUSE	*-**	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR003616 (Post-SET domain), IPR007728 (Pre-SET domain), IPR015880 (Zinc finger, C2H2-like)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0046872 (metal ion binding)
Niben101Scf04079g02015.1	sp|Q9LNT9|ASK4_ARATH	***-	SKP1-like protein 4	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf14883g02007.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf00487g00017.1	emb|CAA67813.1|	*-*-	extensin-like protein Dif10 [Solanum lycopersicum]		
Niben101Scf04703g08012.1	AT2G45260.1	***-	Plant protein of unknown function (DUF641) LENGTH=425	IPR006943 (Domain of unknown function DUF641, plant)	
Niben101Scf03143g12003.1	AT3G26400.1	*-*-	eukaryotic translation initiation factor 4B1 LENGTH=532	IPR010433 (Plant specific eukaryotic initiation factor 4B)	
Niben101Scf04987g00021.1	ref|XP_007043821.1|	*-*-	BED zinc finger,hAT family dimerization domain [Theobroma cacao] gb|EOX99652.1| BED zinc finger,hAT family dimerization domain [Theobroma cacao]	IPR012337 (Ribonuclease H-like domain), IPR025525 (hAT-like transposase, RNase-H fold)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding)
Niben101Scf04439g00002.1	ref|XP_002521818.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF40628.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00050g03001.1	sp|P61077|UB2D3_HUMAN	***-	Ubiquitin-conjugating enzyme E2 D3	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf01684g02015.1	sp|Q9CPR8|MAGG1_MOUSE	***-	Melanoma-associated antigen G1	IPR002190 (MAGE homology domain)	
Niben101Scf00229g07002.1			Unknown protein		
Niben101Scf07044g02001.1	gb|KGZ10670.1|	--*-	gluconolaconase [Serratia marcescens]	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf00046g07031.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf11922g01019.1	AT2G44380.1	***-	Cysteine/Histidine-rich C1 domain family protein LENGTH=247	IPR004146 (DC1), IPR011424 (C1-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02610g01015.1			Unknown protein		
Niben101Scf08355g04012.1	sp|P07754|ADH3_EMENI	*-*-	Alcohol dehydrogenase 3	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07895g02010.1			Unknown protein		
Niben101Scf10239g00001.1	dbj|BAC23029.1|	--*-	tyramine hydroxycinnamoyl transferase [Solanum tuberosum]		
Niben101Scf00046g04022.1	AT1G67850.1	***-	Protein of unknown function (DUF707) LENGTH=404	IPR007877 (Protein of unknown function DUF707)	
Niben101Ctg15879g00002.1	ref|NP_001056547.2|	*-*-	[Oryza sativa Japonica Group] dbj|BAF18461.2| [Oryza sativa Japonica Group]		
Niben101Scf00165g03001.1	sp|Q94CD5|ATG7_ARATH	***-	Ubiquitin-like modifier-activating enzyme atg7	IPR006285 (Ubiquitin-like modifier-activating enzyme Atg7), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0006914 (autophagy)
Niben101Scf16657g00009.1	AT3G42950.1	***-	Pectin lyase-like superfamily protein LENGTH=484	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06814g01022.1	AT2G26150.1	*-**	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01634g02021.1	sp|Q8UVY2|BRX1_XENLA	***-	Ribosome biogenesis protein BRX1 homolog	IPR004154 (Anticodon-binding), IPR007109 (Brix domain), IPR026532 (Ribosome biogenesis protein BRX1)	
Niben101Scf00647g02017.1	sp|Q6AYJ1|RECQ1_RAT	*-**	ATP-dependent DNA helicase Q1	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf04991g00004.1	sp|C4XGC2|NQOR_DESMR	***-	NAD(P)H dehydrogenase (quinone)	IPR010089 (Flavoprotein WrbA), IPR029039 (Flavoprotein-like)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0045892 (negative regulation of transcription, DNA-templated)
Niben101Scf00304g01003.1	sp|O24606|EIN3_ARATH	***-	Protein ETHYLENE INSENSITIVE 3	IPR023278 (Ethylene insensitive 3-like protein, DNA-binding domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf02816g00003.1	AT4G29460.1	****	Phospholipase A2 family protein LENGTH=187	IPR016090 (Phospholipase A2 domain)	GO:0004623 (phospholipase A2 activity), GO:0006644 (phospholipid metabolic process), GO:0016042 (lipid catabolic process)
Niben101Scf06959g00003.1	sp|Q4UZL7|GLGB2_XANC8	--*-	1,4-alpha-glucan branching enzyme GlgB 2		
Niben101Scf01718g01021.1	gb|KEH43211.1|	*-*-	heparan-alpha-glucosaminide N-acetyltransferase-like protein [Medicago truncatula]		
Niben101Scf02740g07005.1	sp|A6Q5H2|PURA_NITSB	--*-	Adenylosuccinate synthetase		
Niben101Scf14859g00005.1	ref|WP_014243176.1|	****	2-oxoglutarate translocator [Bacteriovorax marinus] ref|YP_005034360.1| putative membrane transport protein [Bacteriovorax marinus SJ] emb|CBW25389.1| putative membrane transport protein [Bacteriovorax marinus SJ]	IPR001898 (Sodium/sulphate symporter)	GO:0005215 (transporter activity), GO:0006814 (sodium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00854g04016.1	ref|XP_003588306.1|	--*-	Ribosomal protein S3 [Medicago truncatula]		
Niben101Scf10092g00010.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]		
Niben101Scf03326g05032.1	sp|Q9BVM4|GGACT_HUMAN	*-*-	Gamma-glutamylaminecyclotransferase	IPR013024 (Butirosin biosynthesis, BtrG-like)	
Niben101Scf00792g04005.1			Unknown protein		
Niben101Ctg12636g00001.1	sp|Q1PEH6|AB3A_ARATH	*-*-	ABC transporter A family member 3		
Niben101Scf12427g00015.1	sp|P29059|CHI3_TOBAC	***-	Endochitinase 3	IPR000726 (Glycoside hydrolase, family 19, catalytic), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0006032 (chitin catabolic process), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf03491g01002.1	sp|Q9M325|IPCS1_ARATH	*-*-	Phosphatidylinositol:ceramide inositolphosphotransferase 1	IPR025749 (Sphingomyelin synthase-like domain)	
Niben101Scf06344g01015.1	sp|Q9UY49|IMDH_PYRAB	*-*-	Inosine-5'-monophosphate dehydrogenase	IPR000644 (CBS domain)	
Niben101Scf10743g05006.1	sp|Q9CPR8|MAGG1_MOUSE	***-	Melanoma-associated antigen G1	IPR002190 (MAGE homology domain)	
Niben101Scf00321g01018.1	sp|O64380|PABP3_ARATH	*-**	Polyadenylate-binding protein 3	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05278g01023.1	AT3G16857.2	*-*-	response regulator 1 LENGTH=690	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02572g02016.1	ref|XP_003597700.1|	***-	Activating signal cointegrator 1 complex subunit [Medicago truncatula]	IPR004088 (K Homology domain, type 1), IPR009097 (RNA ligase/cyclic nucleotide phosphodiesterase)	GO:0003723 (RNA binding)
Niben101Scf03390g06005.1	ref|NP_001176094.1|	--*-	[Oryza sativa Japonica Group] dbj|BAH94822.1| [Oryza sativa Japonica Group]		
Niben101Scf13971g01001.1	ref|XP_002532721.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29652.1| conserved hypothetical protein [Ricinus communis]	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf07034g00004.1	sp|P40267|H1_SOLPN	***-	Histone H1	IPR005819 (Histone H5)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf04456g00003.1	sp|Q0ZIV6|YCF2_VITVI	*-*-	Protein Ycf2		
Niben101Scf03321g01009.1	sp|Q9ZWA2|ERF77_ARATH	--**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00700g06019.1	sp|Q9LTH7|ACH12_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 12	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00157g05006.1	emb|CDY24256.1|	***-	BnaC03g42290D [Brassica napus]		
Niben101Scf00094g00008.1	sp|Q42920|PME_MEDSA	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01999g03009.1	AT5G65550.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=466	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02749g05032.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12280g01013.1	sp|Q8WZN0|G3P_SORMA	***-	Glyceraldehyde-3-phosphate dehydrogenase	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf02118g00013.1	sp|O82352|RTNLE_ARATH	***-	Reticulon-like protein B5	IPR003388 (Reticulon)	
Niben101Scf08167g01007.1			Unknown protein		
Niben101Scf00436g10015.1			Unknown protein		
Niben101Scf11447g03003.1	emb|CDY33260.1|	***-	BnaC01g37330D [Brassica napus]		
Niben101Scf02706g02004.1	AT4G14700.1	*-*-	origin recognition complex 1 LENGTH=809	IPR001025 (Bromo adjacent homology (BAH) domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02147g01002.1	emb|CDY27722.1|	***-	BnaA05g31310D [Brassica napus]		
Niben101Scf05574g03005.1	sp|F4K2A1|FPGS1_ARATH	****	Folylpolyglutamate synthase	IPR001645 (Folylpolyglutamate synthetase)	GO:0004326 (tetrahydrofolylpolyglutamate synthase activity), GO:0005524 (ATP binding), GO:0009058 (biosynthetic process), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0016874 (ligase activity)
Niben101Scf01460g04025.1	emb|CCG48010.1|	--*-	sarcoplasmic reticulum histidine-rich calcium-binding protein precursor, putative, expressed [Triticum aestivum]		
Niben101Scf00603g04004.1	AT3G61160.2	****	Protein kinase superfamily protein LENGTH=438	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06275g03010.1	sp|P32026|DEF_TOBAC	***-	Defensin-like protein	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf07650g03017.1	AT3G46460.1	***-	ubiquitin-conjugating enzyme 13 LENGTH=166	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf05435g01001.1	sp|Q9M9W1|RL222_ARATH	***-	60S ribosomal protein L22-2	IPR002671 (Ribosomal protein L22e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07851g02011.1	sp|P0DI70|CSPL2_GINBI	***-	CASP-like protein 5A1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf02637g02012.1	sp|Q9LRV2|PP256_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf07313g05003.1	AT4G34215.1	***-	Domain of unknown function (DUF303) LENGTH=260	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf18951g00022.1	sp|Q949M2|FABG4_BRANA	****	3-oxoacyl-[acyl-carrier-protein] reductase 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf07036g01012.1	AT2G18196.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=178	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf10613g00001.1	ref|XP_002512024.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF50693.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09559g01001.1	AT3G58630.1	***-	sequence-specific DNA binding transcription factors LENGTH=321		
Niben101Scf00395g01001.1	AT5G01610.1	***-	Protein of unknown function, DUF538 LENGTH=170	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf17672g00002.1			Unknown protein		
Niben101Scf00135g03022.1	AT1G75580.1	***-	SAUR-like auxin-responsive protein family LENGTH=108	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf05989g00012.1	sp|Q6NQI8|LAG13_ARATH	***-	LAG1 longevity assurance homolog 3	IPR016439 (Longevity assurance, LAG1/LAC1)	GO:0016021 (integral component of membrane)
Niben101Scf08443g01007.1	sp|F6H2F8|TRM51_VITVI	****	tRNA (guanine(37)-N1)-methyltransferase 1	IPR025792 (tRNA (guanine(37)-N(1))-methyltransferase, eukaryotic), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0009019 (tRNA (guanine-N1-)-methyltransferase activity), GO:0030488 (tRNA methylation)
Niben101Scf02725g03007.1	ref|XP_007022139.1|	-**-	Heat stress transcription factor B-4b, putative [Theobroma cacao] gb|EOY13664.1| Heat stress transcription factor B-4b, putative [Theobroma cacao]		
Niben101Scf09663g04003.1			Unknown protein		
Niben101Scf00388g02001.1	sp|Q9BBS8|RPOC1_LOTJA	*-*-	DNA-directed RNA polymerase subunit beta'		
Niben101Scf00135g00026.1	sp|Q6Z4G8|COBL1_ORYSJ	***-	COBRA-like protein 1	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf03005g03006.1	sp|Q9SYD6|MATE1_ARATH	***-	MATE efflux family protein 1	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf05032g01011.1	sp|Q9WTL2|RAB25_MOUSE	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf08603g03005.1			Unknown protein		
Niben101Scf07805g02001.1	ref|XP_007018438.1|	*-*-	Pre-mRNA-processing protein 40A isoform 3 [Theobroma cacao] gb|EOY15663.1| Pre-mRNA-processing protein 40A isoform 3 [Theobroma cacao]		
Niben101Scf04745g02009.1	sp|Q9FLJ2|NC100_ARATH	*-*-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01549g00006.1	sp|Q9FQ27|TPSGB_SOLHA	*-**	(E,E)-germacrene B synthase	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf06347g01009.1	gb|KEH28697.1|	*-*-	lactoylglutathione lyase/glyoxalase I family protein [Medicago truncatula]	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf01147g04015.1	sp|Q9M815|PCR8_ARATH	***-	Protein PLANT CADMIUM RESISTANCE 8	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf01911g01005.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00613g05017.1	ref|XP_007026671.1|	*-*-	Transducin family protein / WD-40 repeat family protein, putative isoform 3 [Theobroma cacao] gb|EOY07173.1| Transducin family protein / WD-40 repeat family protein, putative isoform 3 [Theobroma cacao]		
Niben101Scf08334g03001.1	sp|Q93Y22|COPD_ARATH	***-	Coatomer subunit delta	IPR011012 (Longin-like domain), IPR027059 (Coatomer delta subunit), IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0006890 (retrograde vesicle-mediated transport, Golgi to ER), GO:0016192 (vesicle-mediated transport), GO:0030126 (COPI vesicle coat), GO:0030131 (clathrin adaptor complex)
Niben101Scf01005g00014.1	sp|A6Q486|DNAJ_NITSB	--*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf09710g00026.1	ref|YP_006291826.1|	***-	orf42 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81180.1| orf42 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf03641g11007.1	AT4G19110.2	*-**	Protein kinase superfamily protein LENGTH=464	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03377g04002.1	AT5G04870.1	****	calcium dependent protein kinase 1 LENGTH=610	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02480g00004.1	sp|Q16G71|MED10_AEDAE	*-**	Mediator of RNA polymerase II transcription subunit 10	IPR019145 (Mediator complex, subunit Med10)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf09790g00013.1	ref|NP_001031825.1|	--**	heavy metal transport/detoxification domain-containing protein [Arabidopsis thaliana] gb|AED90595.1| heavy metal transport/detoxification domain-containing protein [Arabidopsis thaliana]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf07788g03009.1			Unknown protein		
Niben101Scf00370g00003.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01623g17008.1	sp|O45379|ARL3_CAEEL	*-*-	ADP-ribosylation factor-like protein 3	IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR025322 (Protein of unknown function DUF4228, plant), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf09467g02007.1	sp|A6UWV8|RS5_META3	****	30S ribosomal protein S5	IPR000851 (Ribosomal protein S5), IPR014720 (Double-stranded RNA-binding domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf11616g00008.1	sp|P34102|PK3_DICDI	*-**	Protein kinase 3	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04052g00011.1	sp|Q9SVA5|PP357_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf06162g00001.1	AT5G06850.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=794	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Ctg09670g00003.1	ref|XP_007016885.1|	*-*-	Domain of Uncharacterized protein function isoform 5 [Theobroma cacao] gb|EOY34504.1| Domain of Uncharacterized protein function isoform 5 [Theobroma cacao]	IPR010369 (Protein of unknown function DUF966)	
Niben101Scf10158g01034.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf02354g04001.1	sp|Q54R84|AP4B_DICDI	*-*-	AP-4 complex subunit beta	IPR002553 (Clathrin/coatomer adaptor, adaptin-like, N-terminal), IPR016024 (Armadillo-type fold), IPR026739 (AP complex subunit beta)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf00170g05039.1	sp|Q9FHM9|EXOL3_ARATH	*-*-	Protein EXORDIUM-like 3	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf03441g02003.1	sp|Q9LZW3|PUB16_ARATH	--*-	U-box domain-containing protein 16		
Niben101Scf04926g01008.1	sp|P05478|HSP16_SOYBN	*-*-	18.5 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf04932g01028.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03304g01024.1	sp|Q9LSW7|ACCH9_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 9	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf07563g02013.1	gb|ADR31620.1|	***-	DUF579 protein [Populus trichocarpa]	IPR021148 (Putative polysaccharide biosynthesis protein)	
Niben101Scf09801g02001.1			Unknown protein		
Niben101Scf04664g00003.1	sp|P47909|RT31_ORYSJ	--*-	30S ribosomal protein S31, mitochondrial		
Niben101Scf02827g06009.1	AT5G19290.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=330	IPR022742 (Putative lysophospholipase), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01721g05010.1	sp|Q04MR3|RISB_STRP2	*-**	6,7-dimethyl-8-ribityllumazine synthase	IPR002180 (6,7-dimethyl-8-ribityllumazine synthase)	GO:0009231 (riboflavin biosynthetic process), GO:0009349 (riboflavin synthase complex)
Niben101Scf00095g05001.1	sp|Q9P2G9|KLHL8_HUMAN	*-*-	Kelch-like protein 8	IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf00854g11027.1	sp|P12786|COX1_PEA	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01375g09035.1	sp|Q9CMG7|MSBA_PASMU	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf02338g00002.1	AT4G29480.1	****	Mitochondrial ATP synthase subunit G protein LENGTH=122	IPR006808 (ATPase, F0 complex, subunit G, mitochondrial)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf16705g00001.1	sp|P61028|RAB8B_MOUSE	***-	Ras-related protein Rab-8B	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00308g01005.1	AT5G54130.2	****	Calcium-binding endonuclease/exonuclease/phosphatase family LENGTH=436	IPR005135 (Endonuclease/exonuclease/phosphatase), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf16313g01004.1	sp|O49686|PYR1_ARATH	***-	Abscisic acid receptor PYR1	IPR023393 (START-like domain)	
Niben101Scf08979g00001.1			Unknown protein		
Niben101Scf10524g02009.1	AT4G01440.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=365	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01594g05015.1	sp|Q98IV4|CH101_RHILO	***-	10 kDa chaperonin 1	IPR020818 (Chaperonin Cpn10)	GO:0005737 (cytoplasm), GO:0006457 (protein folding)
Niben101Scf02792g02005.1	sp|Q5RAJ5|STK36_PONAB	*-**	Serine/threonine-protein kinase 36	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01375g08016.1	ref|XP_007038839.1|	***-	Pentatricopeptide repeat superfamily protein, putative isoform 1 [Theobroma cacao] gb|EOY23340.1| Pentatricopeptide repeat superfamily protein, putative isoform 1 [Theobroma cacao]	IPR012349 (FMN-binding split barrel)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03805g01001.1	emb|CDX82539.1|	***-	BnaA03g32820D [Brassica napus]		
Niben101Scf01477g00005.1	sp|P44573|OPDA_HAEIN	*-*-	Oligopeptidase A	IPR001567 (Peptidase M3A/M3B), IPR024077 (Neurolysin/Thimet oligopeptidase, domain 2)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf10384g01003.1	sp|O64776|Y1144_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04598g00002.1	AT1G10280.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=412	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf00059g03008.1			Unknown protein		
Niben101Scf00059g02013.1	AT3G53520.4	***-	UDP-glucuronic acid decarboxylase 1 LENGTH=458	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf10205g00001.1	sp|Q8LGG8|USPAL_ARATH	-***	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf05442g00002.1	AT5G03380.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=392	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf00419g08008.1	sp|Q9Y394|DHRS7_HUMAN	****	Dehydrogenase/reductase SDR family member 7	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf04083g04007.1	sp|Q502L1|ACB5A_DANRE	*-**	Acyl-CoA-binding domain-containing protein 5A	IPR014352 (FERM/acyl-CoA-binding protein, 3-helical bundle), IPR020683 (Ankyrin repeat-containing domain), IPR027310 (Profilin conserved site)	GO:0000062 (fatty-acyl-CoA binding), GO:0003779 (actin binding), GO:0005515 (protein binding)
Niben101Scf20097g00003.1	AT2G21520.2	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=637	IPR001071 (Cellular retinaldehyde binding/alpha-tocopherol transport), IPR011074 (CRAL/TRIO, N-terminal domain)	GO:0005215 (transporter activity), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Ctg00898g00001.1	AT1G66480.1	***-	plastid movement impaired 2 LENGTH=225	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf00257g02017.1			Unknown protein		
Niben101Scf05231g02022.1	sp|P59110|SENP1_MOUSE	*-*-	Sentrin-specific protease 1	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf04993g01002.1	sp|Q9SX45|PPR75_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02869g18012.1	ref|NP_001048158.2|	*-*-	[Oryza sativa Japonica Group] dbj|BAF10072.2| [Oryza sativa Japonica Group]	IPR014807 (Cytochrome oxidase assembly protein 1)	
Niben101Scf13289g00008.1	AT1G76640.1	****	Calcium-binding EF-hand family protein LENGTH=159	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03351g04008.1	sp|O80568|ITPK4_ARATH	****	Inositol-tetrakisphosphate 1-kinase 4	IPR008656 (Inositol-tetrakisphosphate 1-kinase)	GO:0000287 (magnesium ion binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0032957 (inositol trisphosphate metabolic process), GO:0047325 (inositol tetrakisphosphate 1-kinase activity), GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity), GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
Niben101Scf00821g10001.1	sp|O35111|KCNK3_MOUSE	--**	Potassium channel subfamily K member 3	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf06517g02024.1	ref|XP_007018269.1|	***-	Golgi-body localization protein domain isoform 2 [Theobroma cacao] gb|EOY15494.1| Golgi-body localization protein domain isoform 2 [Theobroma cacao]	IPR019441 (FMP27, GFWDK domain), IPR019443 (FMP27,  C-terminal)	
Niben101Scf02575g03007.1	sp|Q9C626|FB37_ARATH	***-	F-box protein	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf01732g02016.1	sp|P81394|MYB15_ANTMA	*-*-	Myb-related protein 315	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf12623g04001.1	AT4G34860.1	*-*-	Plant neutral invertase family protein LENGTH=571	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf14876g00009.1	sp|P40229|CSK2C_ARATH	*-**	Casein kinase II subunit beta'	IPR016149 (Casein kinase II, regulatory subunit, alpha-helical)	GO:0005956 (protein kinase CK2 complex), GO:0019887 (protein kinase regulator activity)
Niben101Scf04614g08001.1	sp|O26125|RS14Z_METTH	*-*-	30S ribosomal protein S14 type Z	IPR001209 (Ribosomal protein S14)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01444g00001.1	sp|O43001|SYJ1_SCHPO	*-**	Inositol-1,4,5-trisphosphate 5-phosphatase 1	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf04141g00010.1	sp|Q8SRB2|DBP2_ENCCU	*-**	ATP-dependent RNA helicase DBP2	IPR004589 (DNA helicase, ATP-dependent, RecQ type), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0006310 (DNA recombination), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf02440g01028.1	sp|O64477|Y2913_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain)	
Niben101Scf01919g01006.1	AT4G28240.1	***-	Wound-responsive family protein LENGTH=86	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf07829g03019.1	sp|Q9ZUA9|Y2181_ARATH	***-	PHD finger protein	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02790g04002.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf15836g04014.1	AT5G60800.2	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=302	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf03929g05005.1			Unknown protein		
Niben101Scf03733g06007.1	sp|Q3V096|ANR42_MOUSE	*-*-	Ankyrin repeat domain-containing protein 42	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Ctg14168g00004.1	sp|Q9FUT0|GSTU9_ARATH	***-	Glutathione S-transferase U9	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf19293g00005.1	sp|O82811|NRT21_ARATH	***-	High-affinity nitrate transporter 2.1	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf17356g00003.1	gb|ACF19789.1|	*-*-	NAC transcription factor [Nicotiana tabacum]		
Niben101Scf03647g03016.1	sp|Q9STF0|LRKS3_ARATH	****	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01445g00015.1	AT2G06005.1	***-	FRIGIDA interacting protein 1 LENGTH=355	IPR029399 (TMEM192 family)	
Niben101Scf03805g01005.1			Unknown protein		
Niben101Scf16332g01003.1	emb|CDY43565.1|	***-	BnaC02g16620D [Brassica napus]		
Niben101Scf00177g02006.1	sp|Q9M8X2|U1148_ARATH	***-	U11/U12 small nuclear ribonucleoprotein 48 kDa protein		
Niben101Scf01291g00006.1	sp|Q9ZVE0|ORN_ARATH	--*-	Oligoribonuclease		
Niben101Scf11802g01016.1	sp|Q04HV1|RECF_STRP2	--**	DNA replication and repair protein RecF	IPR003395 (RecF/RecN/SMC, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029685 (Structural maintenance of chromosomes protein 3)	GO:0003682 (chromatin binding), GO:0006281 (DNA repair), GO:0007064 (mitotic sister chromatid cohesion), GO:0008280 (cohesin core heterodimer)
Niben101Scf00168g10018.1	sp|Q8S0F0|FH1_ORYSJ	*-*-	Formin-like protein 1	IPR015425 (Formin, FH2 domain)	
Niben101Scf00332g04004.1	sp|P21195|PDIA1_RABIT	*-**	Protein disulfide-isomerase	IPR011679 (Endoplasmic reticulum, protein ERp29, C-terminal), IPR012336 (Thioredoxin-like fold)	GO:0005783 (endoplasmic reticulum), GO:0016853 (isomerase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf06769g01011.1	ref|XP_003625749.1|	*-*-	Pre-mRNA cleavage complex 2 protein Pcf11 [Medicago truncatula]	IPR006569 (CID domain), IPR007087 (Zinc finger, C2H2), IPR008942 (ENTH/VHS)	GO:0046872 (metal ion binding)
Niben101Scf16015g01001.1			Unknown protein	IPR010800 (Glycine rich protein)	
Niben101Scf12628g02010.1			Unknown protein		
Niben101Scf01688g02005.1	AT3G03590.1	***-	SWIB/MDM2 domain superfamily protein LENGTH=143	IPR003121 (SWIB/MDM2 domain)	GO:0005515 (protein binding)
Niben101Scf02594g01002.1	sp|A1XGS8|RK2_RANMC	****	50S ribosomal protein L2, chloroplastic	IPR002171 (Ribosomal protein L2)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit), GO:0016740 (transferase activity)
Niben101Scf01514g04024.1			Unknown protein		
Niben101Scf08263g03011.1	sp|P70587|LRRC7_RAT	*-*-	Leucine-rich repeat-containing protein 7	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	
Niben101Scf00282g02002.1	sp|Q7XJR9|CDPKG_ARATH	*-**	Calcium-dependent protein kinase 16	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03036g01001.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf06267g00005.1	sp|P93031|GMD2_ARATH	***-	GDP-mannose 4,6 dehydratase 2	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf02636g00006.1	sp|O49884|RL30_LUPLU	***-	60S ribosomal protein L30	IPR000231 (Ribosomal protein L30e), IPR022991 (Ribosomal protein L30e, conserved site), IPR029064 (50S ribosomal protein L30e-like)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03377g04003.1	sp|Q9ZT87|PEL1_ARATH	***-	Protein PELOTA 1	IPR004405 (Translation release factor  pelota), IPR029064 (50S ribosomal protein L30e-like)	GO:0070481 (nuclear-transcribed mRNA catabolic process, non-stop decay), GO:0070966 (nuclear-transcribed mRNA catabolic process, no-go decay), GO:0071025 (RNA surveillance)
Niben101Scf14412g00015.1	sp|Q9H0Z9|RBM38_HUMAN	*-**	RNA-binding protein 38	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00703g04003.1	gb|ABD93485.2|	*-*-	[Solanum pennellii]		
Niben101Scf33832g00004.1	sp|Q9SR02|MED14_ARATH	*-**	Mediator of RNA polymerase II transcription subunit 14	IPR013947 (Mediator complex, subunit Med14)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf02821g07006.1			Unknown protein		
Niben101Scf06390g00006.1	AT2G36290.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=364	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02216g02017.1	AT3G07450.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=106	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf01191g02010.1	sp|Q92376|KLP1_SCHPO	*-**	Kinesin-like protein 1	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf04905g00004.1	sp|Q9LSF7|Y3518_ARATH	*-*-	B3 domain-containing protein	IPR005508 (B3 domain-containing protein), IPR015300 (DNA-binding pseudobarrel domain)	
Niben101Scf03628g02006.1	sp|Q8LD23|GDL4_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf11124g01045.1	sp|Q9C8T7|PP101_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01188g01001.1	AT5G07900.1	****	Mitochondrial transcription termination factor family protein LENGTH=405	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01403g01003.1	sp|Q9Y394|DHRS7_HUMAN	*-**	Dehydrogenase/reductase SDR family member 7	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01051g09003.1	sp|Q99L47|F10A1_MOUSE	*-*-	Hsc70-interacting protein	IPR006636 (Heat shock chaperonin-binding), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf10085g01006.1	sp|Q0WM29|MMSA_ARATH	--*-	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial		
Niben101Scf00066g05001.1	AT5G59410.1	***-	Rab5-interacting family protein LENGTH=130	IPR029008 (Rab5-interacting protein family)	
Niben101Scf01212g01009.1	sp|Q31L10|RL2_SYNE7	*-*-	50S ribosomal protein L2	IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05304g05009.1	sp|A3MS27|RFCL_PYRCJ	*-*-	Replication factor C large subunit	IPR004582 (Checkpoint protein Rad17/Rad24), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0007049 (cell cycle)
Niben101Scf00160g10024.1	sp|Q9H553|ALG2_HUMAN	*-**	Alpha-1,3/1,6-mannosyltransferase ALG2	IPR001296 (Glycosyl transferase, family 1), IPR027054 (Alpha-1,3/1,6-mannosyltransferase ALG2)	GO:0004378 (GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity), GO:0009058 (biosynthetic process), GO:0033164 (glycolipid 6-alpha-mannosyltransferase activity)
Niben101Scf00428g14005.1	emb|CDX70338.1|	***-	BnaA10g26870D [Brassica napus]	IPR023213 (Chloramphenicol acetyltransferase-like domain)	
Niben101Scf18080g02004.1	sp|Q8RVQ5|SEC10_ARATH	***-	Exocyst complex component SEC10	IPR009976 (Exocyst complex component Sec10-like)	GO:0005737 (cytoplasm), GO:0006887 (exocytosis), GO:0048278 (vesicle docking)
Niben101Scf05029g02002.1	sp|P20238|MT1_ERYGU	-**-	Metallothionein-like protein 1	IPR000347 (Metallothionein, family 15, plant)	GO:0046872 (metal ion binding)
Niben101Scf02425g02015.1	emb|CDX97534.1|	***-	BnaA05g25450D [Brassica napus]		
Niben101Scf02622g09004.1	AT5G04520.1	***-	Protein of unknown function DUF455 LENGTH=291	IPR007402 (Protein of unknown function DUF455), IPR009078 (Ferritin-like superfamily)	
Niben101Scf02360g01009.1	sp|Q86V71|ZN429_HUMAN	*-*-	Zinc finger protein 429	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00311g02004.1	AT5G55090.1	****	mitogen-activated protein kinase kinase kinase 15 LENGTH=448	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01415g00012.1	sp|Q9ZNV9|AHP1_ARATH	***-	Histidine-containing phosphotransfer protein 1	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity)
Niben101Scf04347g00012.1	ref|WP_026188427.1|	***-	methyltransferase [Rhizobium leguminosarum]	IPR009902 (Protein of unknown function DUF1442), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01721g06001.1	ref|NP_001234679.1|	*-*-	ARGOS [Solanum lycopersicum] gb|ACN38309.1| ARGOS [Solanum lycopersicum]		
Niben101Scf02915g08006.1	emb|CDY57650.1|	***-	BnaAnng14910D [Brassica napus]		
Niben101Scf01826g02032.1	sp|O23034|UBA5_ARATH	***-	Ubiquitin-like modifier-activating enzyme 5	IPR016040 (NAD(P)-binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1)	GO:0003824 (catalytic activity)
Niben101Scf06295g03003.1	sp|Q304A0|MRS27_ARATH	****	Magnesium transporter MRS2-7	IPR026573 (Magnesium transporter MRS2/LPE10)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport)
Niben101Scf02182g07005.1	AT1G22850.1	***-	SNARE associated Golgi protein family LENGTH=344		
Niben101Scf00854g08004.1	sp|A4YVK3|NUOH_BRASO	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf02772g05006.1	sp|Q0T7A9|AES_SHIF8	*-*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf04328g00040.1	sp|B3QY46|NUOC_CHLT3	*-**	NADH-quinone oxidoreductase subunit C	IPR001268 (NADH:ubiquinone oxidoreductase, 30kDa subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0055114 (oxidation-reduction process)
Niben101Scf06341g00003.1			Unknown protein		
Niben101Scf02705g01020.1	sp|Q9LD45|BI1_ARATH	***-	Bax inhibitor 1	IPR006214 (Bax inhibitor 1-related)	
Niben101Scf07019g02007.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR002902 (Gnk2-homologous domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04314g02013.1			Unknown protein		
Niben101Scf03164g06008.1	sp|Q9M302|PP270_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03403g01029.1			Unknown protein		
Niben101Scf08009g00010.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02455g00008.1			Unknown protein		
Niben101Scf16292g00003.1	gb|ADX62210.1|	***-	Ycf1, partial (chloroplast) [Lepechinia caulescens]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf05407g03007.1	sp|Q93V93|PER44_ARATH	****	Peroxidase 44	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03643g02001.1	sp|A8GPZ6|ATPA_RICAH	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf06848g06001.1	emb|CDY61097.1|	*-*-	BnaC06g41640D [Brassica napus]		
Niben101Scf05733g00003.1	AT1G71050.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=152	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf08513g00007.1	sp|Q56WM6|ROGFE_ARATH	****	Rop guanine nucleotide exchange factor 14	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf03915g04006.1			Unknown protein		
Niben101Scf04103g05004.1	sp|A7MCT6|EKI2_MOUSE	***-	Ethanolamine kinase 2	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05767g04004.1	sp|Q9FKC0|R13A4_ARATH	****	60S ribosomal protein L13a-4	IPR005822 (Ribosomal protein L13), IPR023564 (Ribosomal protein L13 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf00024g00003.1	sp|Q8L539|5FCL_ARATH	*-*-	5-formyltetrahydrofolate cyclo-ligase, mitochondrial	IPR002698 (5-formyltetrahydrofolate cyclo-ligase), IPR024185 (5-formyltetrahydrofolate cyclo-ligase-like domain)	
Niben101Scf01395g02007.1	gb|KGG36516.1|	****	Nickel transporter UreH [Prochlorococcus sp. MIT 0703]	IPR011541 (Nickel/cobalt transporter, high-affinity)	GO:0015099 (nickel cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0035444 (nickel cation transmembrane transport), GO:0046872 (metal ion binding)
Niben101Scf07304g07013.1			Unknown protein		
Niben101Scf01396g07021.1			Unknown protein		
Niben101Scf01374g10002.1	sp|P53756|PDR18_YEAST	****	ABC transporter ATP-binding protein/permease PDR18	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf10763g00002.1	sp|Q9SDT1|POR_DAUCA	****	Protochlorophyllide reductase, chloroplastic	IPR002198 (Short-chain dehydrogenase/reductase SDR), IPR005979 (Light-dependent protochlorophyllide reductase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016630 (protochlorophyllide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf14310g00013.1	sp|Q87SW0|F16PA_VIBPA	****	Fructose-1,6-bisphosphatase class 1	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf00530g08006.1	AT2G46320.1	*-*-	Mitochondrial substrate carrier family protein LENGTH=361	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf02014g00020.1	ref|WP_030609432.1|	****	NADPH:quinone oxidoreductase [Streptomyces achromogenes]	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01037g01016.1	sp|Q0KL01|UBX2B_MOUSE	***-	UBX domain-containing protein 2B	IPR009060 (UBA-like), IPR012989 (SEP domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf10228g00004.1	sp|Q9LZ06|GSTL3_ARATH	***-	Glutathione S-transferase L3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf02000g00006.1	ref|XP_003637074.1|	*-*-	Cell wall-associated hydrolase, partial [Medicago truncatula]		
Niben101Scf11831g00001.1	sp|Q9FK93|PP406_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05822g05004.1	AT3G54200.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=235	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf12469g01008.1	sp|O23039|ZIP5_ARATH	*-**	Zinc transporter 5	IPR003689 (Zinc/iron permease)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00428g03013.1			Unknown protein		
Niben101Scf00245g02003.1	sp|Q9SUD8|PP340_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06248g01001.1			Unknown protein		
Niben101Scf03175g01013.1	sp|Q8BHA0|IN80C_MOUSE	*-*-	INO80 complex subunit C	IPR013272 (YL1 nuclear, C-terminal)	
Niben101Scf02929g01023.1	sp|Q9BBR5|PSBE_LOTJA	***-	Cytochrome b559 subunit alpha	IPR006217 (Photosystem II cytochrome b559, alpha subunit)	GO:0009523 (photosystem II), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf20316g00003.1	sp|Q94JW8|SPL6_ARATH	****	Squamosa promoter-binding-like protein 6	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf00922g00010.1			Unknown protein		
Niben101Scf00783g05025.1	sp|Q5REC9|RAB8B_PONAB	***-	Ras-related protein Rab-8B	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02248g01002.1	emb|CDY24408.1|	*-*-	BnaCnng04750D [Brassica napus]	IPR012438 (Protein of unknown function DUF1639)	
Niben101Scf01232g05005.1	gb|ABF98470.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf37475g00001.1	AT5G26630.1	***-	MADS-box transcription factor family protein LENGTH=218	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf13206g00003.1	sp|Q8S9M3|GRF9_ARATH	***-	Growth-regulating factor 9	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf04558g02005.1			Unknown protein		
Niben101Scf06700g04006.1	AT3G13226.1	*-*-	regulatory protein RecX family protein LENGTH=382	IPR003783 (Regulatory protein RecX), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0006282 (regulation of DNA repair)
Niben101Scf00567g05004.1	ref|XP_003599949.1|	****	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf07162g01008.1	sp|O34392|YTRE_BACSU	*-**	ABC transporter ATP-binding protein YtrE	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf02605g01003.1	sp|Q9P0L0|VAPA_HUMAN	*-**	Vesicle-associated membrane protein-associated protein A	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf17629g00004.1	AT1G05150.1	****	Calcium-binding tetratricopeptide family protein LENGTH=808	IPR011990 (Tetratricopeptide-like helical domain), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding)
Niben101Scf02059g01002.1	sp|Q8TRC3|EF2_METAC	***-	Elongation factor 2	IPR000640 (Translation elongation factor EFG, V domain), IPR000795 (Elongation factor, GTP-binding domain), IPR005225 (Small GTP-binding protein domain), IPR009000 (Translation protein, beta-barrel domain), IPR009022 (Elongation factor G, III-V domain), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf00797g17003.1	sp|O76094|SRP72_HUMAN	*-*-	Signal recognition particle subunit SRP72	IPR026270 (Signal recognition particle, SRP72 subunit)	GO:0006614 (SRP-dependent cotranslational protein targeting to membrane)
Niben101Scf21968g00003.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf07223g03021.1	sp|P50699|TLPH_ARATH	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf02172g01001.1			Unknown protein		
Niben101Scf00056g09002.1	sp|Q61382|TRAF4_MOUSE	*-*-	TNF receptor-associated factor 4	IPR008974 (TRAF-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027138 (TNF receptor-associated factor 4)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0007250 (activation of NF-kappaB-inducing kinase activity), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination), GO:0046330 (positive regulation of JNK cascade)
Niben101Scf06221g04015.1			Unknown protein		
Niben101Scf03028g03025.1	sp|A7GJ02|RS4B_CLOBL	--*-	30S ribosomal protein S4 B	IPR002942 (RNA-binding S4 domain), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding)
Niben101Scf11709g02005.1	sp|Q9SFC6|GDIR_ARATH	****	Rho GDP-dissociation inhibitor 1	IPR000406 (RHO protein GDP dissociation inhibitor), IPR014756 (Immunoglobulin E-set)	GO:0005094 (Rho GDP-dissociation inhibitor activity), GO:0005737 (cytoplasm)
Niben101Scf01340g03007.1	AT1G08760.1	***-	Plant protein of unknown function (DUF936) LENGTH=748	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Scf05486g01004.1	sp|Q9M9Q6|SCP50_ARATH	*-**	Serine carboxypeptidase-like 50	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04119g01012.1	emb|CDY03466.1|	***-	BnaC01g16160D [Brassica napus]		
Niben101Scf00435g01011.1	sp|Q61897|KT33B_MOUSE	--*-	Keratin, type I cuticular Ha3-II		
Niben101Scf03619g05002.1	sp|C7FF04|PPO3_AGABI	--**	Polyphenol oxidase 3	IPR008922 (Uncharacterised domain, di-copper centre), IPR016213 (Polyphenol oxidase)	GO:0004097 (catechol oxidase activity), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0046148 (pigment biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf04180g02005.1	AT2G26640.1	***-	3-ketoacyl-CoA synthase 11 LENGTH=509	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02830g02014.1	AT5G07900.1	****	Mitochondrial transcription termination factor family protein LENGTH=405	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01722g05006.1	sp|Q9C652|RBP1_ARATH	*-**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04963g05001.1	sp|Q6BQJ1|TVP38_DEBHA	--*-	Golgi apparatus membrane protein TVP38		
Niben101Scf19719g00004.1	emb|CAA80358.1|	***-	beta-fructofuranosidase [Solanum tuberosum]	IPR001362 (Glycoside hydrolase, family 32), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03341g01023.1	sp|P38055|YDJE_ECOLI	--**	Inner membrane metabolite transport protein YdjE	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02622g12037.1	sp|Q07060|ATP9_PETSP	*-**	ATP synthase subunit 9, mitochondrial	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf20099g01006.1	sp|O04421|SRP14_ARATH	****	Signal recognition particle 14 kDa protein	IPR003210 (Signal recognition particle, SRP14 subunit), IPR009018 (Signal recognition particle, SRP9/SRP14 subunit)	GO:0005786 (signal recognition particle, endoplasmic reticulum targeting), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0030942 (endoplasmic reticulum signal peptide binding), GO:0048500 (signal recognition particle)
Niben101Scf01933g14002.1	sp|Q8LK93|PP145_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00907g00001.1	sp|A2VDN6|SF3A1_BOVIN	*-*-	Splicing factor 3A subunit 1	IPR000061 (SWAP/Surp), IPR022030 (Pre-mRNA splicing factor PRP21-like protein), IPR029071 (Ubiquitin-related domain)	GO:0003723 (RNA binding), GO:0005515 (protein binding), GO:0006396 (RNA processing)
Niben101Scf09192g01004.1	sp|Q8LAU9|GATA1_ARATH	****	GATA transcription factor 1	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03160g02007.1			Unknown protein		
Niben101Scf12266g00002.1	AT3G15660.1	***-	glutaredoxin 4 LENGTH=169	IPR004480 (Monothiol glutaredoxin-related), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00327g01005.1	sp|Q56X05|PPR15_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03500g02002.1	sp|O80434|LAC4_ARATH	***-	Laccase-4	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01235g00016.1	AT1G76480.2	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=231		
Niben101Scf07347g00003.1	AT4G34860.1	*-*-	Plant neutral invertase family protein LENGTH=571	IPR024746 (Glycosyl hydrolase family 100)	GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf16556g00008.1			Unknown protein		
Niben101Scf11790g00003.1	AT1G07730.2	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=389	IPR004265 (Plant disease resistance response protein)	
Niben101Scf00545g00013.1	sp|P33731|SRP72_CANFA	****	Signal recognition particle subunit SRP72	IPR011990 (Tetratricopeptide-like helical domain), IPR013699 (Signal recognition particle, SRP72 subunit, RNA-binding), IPR026270 (Signal recognition particle, SRP72 subunit)	GO:0005515 (protein binding), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0048500 (signal recognition particle)
Niben101Scf00050g03002.1	sp|Q8L7E9|MCAC1_ARATH	***-	Protein MID1-COMPLEMENTING ACTIVITY 1	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf05820g01005.1	sp|Q84Q77|HS17A_ORYSJ	--*-	17.9 kDa class I heat shock protein		
Niben101Scf01124g26007.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf03390g06003.1	gb|ACG39131.1|	****	transferase, transferring glycosyl groups [Zea mays]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf02907g07021.1	sp|Q54UC9|KIF3_DICDI	*-**	Kinesin-related protein 3	IPR001752 (Kinesin motor domain), IPR021720 (Malectin), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf01023g02006.1	ref|NP_973753.2|	*-*-	DTW domain-containing protein [Arabidopsis thaliana] gb|AEE27598.1| DTW domain-containing protein [Arabidopsis thaliana]		
Niben101Scf28115g01001.1	sp|P42751|CCD11_ARATH	***-	Cyclin-D1-1	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf04060g03007.1	emb|CDX73726.1|	***-	BnaC08g22770D [Brassica napus]		
Niben101Scf07798g03006.1	sp|Q9FXA2|PABP8_ARATH	*-**	Polyadenylate-binding protein 8	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04506g03011.1	AT5G63400.1	****	adenylate kinase 1 LENGTH=246	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004017 (adenylate kinase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0016776 (phosphotransferase activity, phosphate group as acceptor), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf03239g05003.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01143g06019.1	sp|Q60E70|COBL3_ORYSJ	***-	COBRA-like protein 3	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf03539g00004.1	AT3G22250.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=461	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05304g00011.1	sp|Q24133|DNAJ1_DROME	*-*-	DnaJ protein homolog 1	IPR008971 (HSP40/DnaJ peptide-binding)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf00419g00021.1	AT5G44370.1	***-	phosphate transporter 4;6 LENGTH=432	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01120g01006.1			Unknown protein		
Niben101Scf21699g00023.1	AT5G20260.1	***-	Exostosin family protein LENGTH=458	IPR004263 (Exostosin-like)	
Niben101Scf09291g00002.1	sp|C5D6U5|MENE_GEOSW	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03693g07009.1	sp|P13682|ZNF35_HUMAN	--*-	Zinc finger protein 35	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00083g01001.1	sp|Q3KLM3|SYFB_CHLTA	--*-	Phenylalanine--tRNA ligase beta subunit		
Niben101Scf02740g07007.1	emb|CDY53602.1|	--*-	BnaC09g51900D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00123g06011.1	sp|Q9SSB8|CX5B2_ARATH	****	Cytochrome c oxidase subunit 5b-2, mitochondrial	IPR002124 (Cytochrome c oxidase, subunit Vb)	GO:0004129 (cytochrome-c oxidase activity), GO:0005740 (mitochondrial envelope)
Niben101Scf08280g03018.1	sp|Q9SFU3|PPA15_ARATH	****	Purple acid phosphatase 15	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf04093g00018.1	sp|Q5RKL7|S35E4_RAT	***-	Solute carrier family 35 member E4	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf05238g01014.1	sp|Q9EPH8|PABP1_RAT	--**	Polyadenylate-binding protein 1	IPR000010 (Proteinase inhibitor I25, cystatin), IPR006525 (Cystatin-related, plant), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf03038g01007.1			Unknown protein		
Niben101Scf05618g04001.1	AT5G05690.1	***-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03853g03012.1	sp|O64896|TPPA_ARATH	****	Trehalose-phosphate phosphatase A	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf05880g02003.1	AT2G30020.1	****	Protein phosphatase 2C family protein LENGTH=396	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf01148g01001.1	ref|XP_002524817.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF37537.1| conserved hypothetical protein [Ricinus communis]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf02074g06079.1	sp|Q5X1B4|NUOH_LEGPA	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf01677g03004.1	AT1G20925.1	***-	Auxin efflux carrier family protein LENGTH=472	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00626g02015.1	sp|P24636|TBB4_ARATH	*-*-	Tubulin beta-4 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf07678g06023.1	sp|Q9SHJ3|CALS7_ARATH	*-**	Callose synthase 7	IPR026953 (Callose synthase)	GO:0003843 (1,3-beta-D-glucan synthase activity)
Niben101Scf07944g00013.1	sp|Q4V7B8|RNF44_RAT	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00870g01021.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01784g06012.1			Unknown protein		
Niben101Scf03563g00031.1			Unknown protein		
Niben101Scf09141g02021.1			Unknown protein		
Niben101Scf00963g05002.1	AT3G54640.1	****	tryptophan synthase alpha chain LENGTH=312	IPR002028 (Tryptophan synthase, alpha chain), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004834 (tryptophan synthase activity), GO:0006568 (tryptophan metabolic process), GO:0008152 (metabolic process)
Niben101Scf02538g03016.1	sp|Q9C9N6|PMI2_ARATH	***-	Protein PLASTID MOVEMENT IMPAIRED 2	IPR008545 (WEB family)	
Niben101Scf00298g02004.1	ref|WP_028347690.1|	***-	cupin [Bradyrhizobium elkanii]	IPR009327 (Protein of unknown function DUF985)	
Niben101Scf02351g02002.1	AT4G34980.1	****	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01612g02009.1	sp|Q9LMK5|STN1_ARATH	***-	CST complex subunit STN1	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding)
Niben101Scf08449g00002.1	sp|Q40778|C74A2_PARAR	***-	Allene oxide synthase	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00348g01010.1	ref|YP_009045728.1|	-**-	orf112a (mitochondrion) [Batis maritima] gb|AIC83331.1| orf112a (mitochondrion) [Batis maritima]		
Niben101Scf02078g00002.1	emb|CDY51950.1|	***-	BnaA08g11680D [Brassica napus]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Ctg13477g00004.1	gb|KEH34949.1|	--*-	outer arm dynein light chain 1 [Medicago truncatula]		
Niben101Scf05872g02002.1	AT1G58170.1	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=185	IPR004265 (Plant disease resistance response protein)	
Niben101Scf10608g00003.1	dbj|BAH56604.1|	*-*-	receptor-like kinase [Glycine max]		
Niben101Scf00885g19001.1	AT2G34630.2	***-	geranyl diphosphate synthase 1 LENGTH=422	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf10122g01032.1	AT1G69690.1	*-*-	TCP family transcription factor LENGTH=325	IPR005333 (Transcription factor, TCP)	
Niben101Scf12983g01052.1	sp|O04379|AGO1_ARATH	*-*-	Protein argonaute 1		
Niben101Scf03191g04002.1	AT1G03220.1	***-	Eukaryotic aspartyl protease family protein LENGTH=433	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05002g03028.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf05381g03004.1	AT3G22960.1	****	Pyruvate kinase family protein LENGTH=596	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf09856g00002.1	sp|P43333|RU2A_ARATH	*-*-	U2 small nuclear ribonucleoprotein A'		
Niben101Scf01721g07003.1	sp|O81772|PER46_ARATH	****	Peroxidase 46	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05399g02004.1	ref|XP_007043913.1|	***-	Gap junction beta-4 protein isoform 1 [Theobroma cacao] gb|EOX99744.1| Gap junction beta-4 protein isoform 1 [Theobroma cacao]		
Niben101Scf00717g02016.1	ref|XP_002534699.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF27685.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06727g00020.1	AT2G36770.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00080g05005.1	emb|CDY36856.1|	*-*-	BnaC08g09910D [Brassica napus]	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00411g01002.1	AT5G06590.1	*-*-	unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=314		
Niben101Scf03167g02011.1	sp|Q9SU40|SKU5_ARATH	***-	Monocopper oxidase-like protein SKU5	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02869g15022.1	gb|KEH20407.1|	****	salicylic acid carboxyl methyltransferase [Medicago truncatula]	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf06677g01002.1	sp|P41127|RL131_ARATH	***-	60S ribosomal protein L13-1	IPR001380 (Ribosomal protein L13e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00308g01002.1	AT5G24580.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=319	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf00229g07003.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00982g02010.1	sp|Q9SXB5|Y1135_ARATH	--*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain)	
Niben101Scf00414g03008.1	sp|Q9LTT3|HMG10_ARATH	***-	High mobility group B protein 10	IPR001606 (ARID DNA-binding domain), IPR009071 (High mobility group box domain)	GO:0003677 (DNA binding)
Niben101Scf04318g02011.1	sp|F4IGA5|NU133_ARATH	***-	Nuclear pore complex protein NUP133	IPR007187 (Nucleoporin, Nup133/Nup155-like, C-terminal), IPR014908 (Nucleoporin, Nup133/Nup155-like, N-terminal), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf08195g02005.1	sp|Q8R3D1|TBC13_MOUSE	*-*-	TBC1 domain family member 13	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf04626g01004.1	AT3G28180.1	***-	Cellulose-synthase-like C4 LENGTH=673	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf08308g04015.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04021g07007.1	sp|Q9LEX0|P2A13_ARATH	***-	F-box protein PP2-A13	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf02740g07006.1	sp|Q84NC5|MAD25_ORYSJ	*-*-	MADS-box transcription factor 25	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01538g02002.1	sp|Q9M1V3|PP296_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02914g01006.1	sp|Q8CCF0|PRP31_MOUSE	*-*-	U4/U6 small nuclear ribonucleoprotein Prp31	IPR002687 (Nop domain), IPR027105 (U4/U6 small nuclear ribonucleoprotein Prp31)	GO:0000244 (spliceosomal tri-snRNP complex assembly), GO:0000398 (mRNA splicing, via spliceosome), GO:0046540 (U4/U6 x U5 tri-snRNP complex)
Niben101Scf02461g06004.1	AT1G05150.1	*-**	Calcium-binding tetratricopeptide family protein LENGTH=808	IPR011990 (Tetratricopeptide-like helical domain), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding)
Niben101Scf10934g01001.1	ref|NP_063977.1|	*-*-	orf146 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] ref|YP_004222306.1| hypothetical protein BevumaM_p071 [Beta vulgaris subsp. maritima] dbj|BAA99289.1| orf146 [Beta vulgaris subsp. vulgaris] emb|CBJ14042.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBJ17533.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBL54124.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp. maritima]		
Niben101Scf04181g00035.1	AT4G35420.1	***-	dihydroflavonol 4-reductase-like1 LENGTH=326	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf07965g02017.1	gb|KEH35012.1|	*-*-	sieve element occlusion protein [Medicago truncatula]	IPR027942 (Sieve element occlusion, N-terminal)	
Niben101Scf03069g00007.1	sp|A9YUB1|CHRD1_PIG	***-	Cysteine and histidine-rich domain-containing protein 1	IPR007051 (Cysteine/histidine-rich domain)	
Niben101Scf04991g00003.1	sp|Q8GXT3|BH123_ARATH	*-*-	Transcription factor bHLH123	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03759g01001.1	emb|CDY47084.1|	***-	BnaA03g12140D [Brassica napus]		
Niben101Scf07408g00002.1	sp|P0CS17|UBC2_CRYNB	***-	Ubiquitin-conjugating enzyme E2 2	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site), IPR027230 (SUMO-conjugating enzyme Ubc9)	GO:0019789 (SUMO transferase activity)
Niben101Scf05149g00007.1	sp|Q9SUY0|FB244_ARATH	--*-	F-box protein	IPR017451 (F-box associated interaction domain)	
Niben101Scf13391g01008.1	AT5G04870.1	****	calcium dependent protein kinase 1 LENGTH=610	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04420g02004.1	sp|Q7M443|CHIT2_TULBA	***-	Chitinase 2	IPR000677 (2S globulin), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02086g01010.1	sp|Q9LZ06|GSTL3_ARATH	***-	Glutathione S-transferase L3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf03390g06004.1	emb|CDX67896.1|	***-	BnaA07g19360D [Brassica napus]		
Niben101Scf00440g04011.1	sp|P59669|UBIQP_GEOCY	*-*-	Polyubiquitin	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf01664g02014.1	AT1G02110.1	***-	Protein of unknown function (DUF630 and DUF632) LENGTH=703	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf00307g02001.1	sp|Q7NG34|GLO2_GLOVI	*-*-	Hydroxyacylglutathione hydrolase	IPR001279 (Beta-lactamase-like), IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf00854g05055.1	ref|YP_009045815.1|	--*-	orf221 (mitochondrion) [Batis maritima] gb|AIC83418.1| orf221 (mitochondrion) [Batis maritima]		
Niben101Scf07119g00007.1	AT1G18160.1	*-**	Protein kinase superfamily protein LENGTH=992	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03819g01002.1	emb|CDX85258.1|	***-	BnaC07g25690D [Brassica napus]		
Niben101Scf05118g05010.1	AT4G00530.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=71		
Niben101Scf04905g04004.1	sp|P09317|G3P_USTMA	*-*-	Glyceraldehyde-3-phosphate dehydrogenase	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00410g02010.1	AT1G80245.1	*-*-	Spc97 / Spc98 family of spindle pole body (SBP) component LENGTH=127		
Niben101Scf00854g01020.1	ref|XP_002536345.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF26037.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf20512g01005.1	ref|XP_002518385.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF44021.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03160g02006.1	sp|Q652P9|GL93_ORYSJ	***-	Germin-like protein 9-3	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf04053g03008.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06655g00014.1	sp|Q02972|CADH8_ARATH	--*-	Cinnamyl alcohol dehydrogenase 8		
Niben101Scf15496g00013.1	AT4G17690.1	****	Peroxidase superfamily protein LENGTH=326	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08041g00013.1	sp|Q9ZW07|PUM1_ARATH	***-	Pumilio homolog 1	IPR012940 (Nucleic acid binding NABP), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf04804g01015.1	sp|Q5ZJW4|SC22B_CHICK	***-	Vesicle-trafficking protein SEC22b	IPR011012 (Longin-like domain)	GO:0006810 (transport)
Niben101Scf01721g10013.1	sp|O04173|TAF10_ARATH	****	Transcription initiation factor TFIID subunit 10	IPR003923 (Transcription initiation factor TFIID, 23-30kDa subunit)	GO:0005634 (nucleus), GO:0006352 (DNA-templated transcription, initiation)
Niben101Scf13907g00001.1	AT2G33700.1	****	Protein phosphatase 2C family protein LENGTH=380	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf04528g02001.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02156g15009.1	sp|Q3AET6|GCSH_CARHZ	****	Glycine cleavage system H protein	IPR002930 (Glycine cleavage system H-protein)	GO:0005960 (glycine cleavage complex), GO:0019464 (glycine decarboxylation via glycine cleavage system)
Niben101Scf04794g00021.1	sp|Q0WKZ3|PP105_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00700g09004.1	sp|Q43046|COMT1_POPKI	****	Caffeic acid 3-O-methyltransferase 1	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf08921g00002.1	sp|Q4PJX1|ODR4_MOUSE	***-	Protein odr-4 homolog	IPR029454 (ODR-4-like)	
Niben101Scf03186g02006.1	sp|Q55DM5|S35B2_DICDI	*-*-	Adenosine 3'-phospho 5'-phosphosulfate transporter 1	IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf11368g00014.1	sp|Q8VZ14|RMR2_ARATH	*-*-	Receptor homology region, transmembrane domain- and RING domain-containing protein 2	IPR003137 (Protease-associated domain, PA)	
Niben101Ctg15269g00004.1	gb|AET04887.2|	*-*-	ENTH/VHS/GAT family protein [Medicago truncatula]		
Niben101Scf13415g00006.1	sp|Q7Z3T8|ZFY16_HUMAN	*-*-	Zinc finger FYVE domain-containing protein 16	IPR007461 (Ysc84 actin-binding domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0046872 (metal ion binding)
Niben101Scf05100g01013.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03147g10010.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf02576g00008.1	sp|Q9CAD5|YODA_ARATH	--*-	Mitogen-activated protein kinase kinase kinase YODA		
Niben101Scf00050g01002.1	AT3G16670.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=154	IPR006041 (Pollen Ole e 1 allergen/extensin), IPR013783 (Immunoglobulin-like fold)	
Niben101Scf02627g00018.1	sp|Q9S1G2|DPO1_RHILE	*-**	DNA polymerase I	IPR002298 (DNA polymerase A)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication), GO:0006261 (DNA-dependent DNA replication)
Niben101Scf02182g01015.1	AT5G04460.1	***-	RING/U-box superfamily protein LENGTH=863	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04703g08011.1	gb|AAP54617.2|	--*-	retrotransp OsJ_32156 [Oryza sativa Japonica Group]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf02575g00005.1	sp|Q94C77|RPKL_ARATH	****	Receptor protein kinase-like protein	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01623g15003.1	AT4G02100.1	***-	Heat shock protein DnaJ with tetratricopeptide repeat LENGTH=546	IPR001623 (DnaJ domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08652g01010.1	sp|Q6P3Q4|STK4_XENTR	*-**	Serine/threonine-protein kinase 4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02854g10010.1			Unknown protein	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf03751g01004.1	AT5G42830.1	****	HXXXD-type acyl-transferase family protein LENGTH=450	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf07755g00003.1	AT5G40190.1	***-	RNA ligase/cyclic nucleotide phosphodiesterase family protein LENGTH=183	IPR009097 (RNA ligase/cyclic nucleotide phosphodiesterase)	
Niben101Scf06682g00003.1	sp|Q8BKN5|GCP5_MOUSE	*-*-	Gamma-tubulin complex component 5	IPR007259 (Gamma-tubulin complex component protein)	GO:0000226 (microtubule cytoskeleton organization), GO:0000922 (spindle pole), GO:0005815 (microtubule organizing center)
Niben101Scf01759g05008.1	sp|P0DI70|CSPL2_GINBI	***-	CASP-like protein 5A1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf02569g03013.1	sp|Q54QC8|SEC1_DICDI	****	Protein transport protein sec1	IPR001619 (Sec1-like protein), IPR027482 (Sec1-like, domain 2)	GO:0006904 (vesicle docking involved in exocytosis), GO:0016192 (vesicle-mediated transport)
Niben101Scf01130g01007.1	AT1G48910.1	***-	Flavin-containing monooxygenase family protein LENGTH=383	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10316g03003.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf20512g00004.1	emb|CDY24105.1|	***-	BnaA06g01030D [Brassica napus]		
Niben101Scf00201g01004.1	AT4G17080.1	*-*-	Histone H3 K4-specific methyltransferase SET7/9 family protein LENGTH=513	IPR003409 (MORN motif)	
Niben101Scf03038g17022.1	sp|Q1GEU8|ATPB_RUEST	*-*-	ATP synthase subunit beta		
Niben101Scf08535g02006.1	sp|Q62018|CTR9_MOUSE	***-	RNA polymerase-associated protein CTR9 homolog	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00897g05002.1	sp|Q9ZV89|TBL42_ARATH	***-	Protein trichome birefringence-like 42	IPR026057 (PC-Esterase)	
Niben101Scf03584g02010.1	sp|A6H5Z3|EXC6B_MOUSE	****	Exocyst complex component 6B	IPR007225 (Exocyst complex subunit Sec15-like)	GO:0000145 (exocyst), GO:0006904 (vesicle docking involved in exocytosis)
Niben101Scf01582g08011.1	AT5G17530.3	*-*-	phosphoglucosamine mutase family protein LENGTH=614	IPR016055 (Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III)	GO:0005975 (carbohydrate metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf01927g07001.1	sp|Q9M0G0|GAGT3_ARATH	****	Gamma-glutamyltranspeptidase 3	IPR000101 (Gamma-glutamyltranspeptidase), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0003840 (gamma-glutamyltransferase activity), GO:0006749 (glutathione metabolic process)
Niben101Scf01192g03002.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf00047g03004.1	sp|P40690|ALKE_BABBO	-**-	Aldo-keto reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf01626g02002.1	sp|A2RAG5|ATG18_ASPNC	*-*-	Autophagy-related protein 18	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR022175 (Breast carcinoma amplified sequence 3)	GO:0005515 (protein binding)
Niben101Scf08294g01001.1	sp|Q84UU9|TPS06_ARATH	****	Terpenoid synthase 6	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf04800g01004.1			Unknown protein		
Niben101Scf04033g03017.1	tpg|DAA39153.1|	***-	TPA: hypothetical protein ZEAMMB73_815968 [Zea mays]		
Niben101Scf01491g02004.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf05932g05003.1	sp|P94014|GL21_ARATH	***-	Germin-like protein subfamily 2 member 1	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf02494g11004.1	ref|XP_007039994.1|	***-	F5O11.10 isoform 3 [Theobroma cacao] gb|EOY24495.1| F5O11.10 isoform 3 [Theobroma cacao]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf09403g00021.1	sp|C4Y4R9|MZM1_CLAL4	-**-	Mitochondrial zinc maintenance protein 1, mitochondrial	IPR008011 (Complex 1 LYR protein)	
Niben101Scf04003g02003.1			Unknown protein		
Niben101Scf00922g00011.1	sp|O48626|ZW10_ARATH	***-	Centromere/kinetochore protein zw10 homolog	IPR009361 (RZZ complex, subunit Zw10)	GO:0000775 (chromosome, centromeric region), GO:0005634 (nucleus), GO:0007067 (mitotic nuclear division)
Niben101Scf03705g01011.1	AT1G18160.1	*-**	Protein kinase superfamily protein LENGTH=992	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10579g02019.1	sp|Q9LHP4|RCH2_ARATH	--*-	Receptor-like protein kinase 2		
Niben101Scf03638g01001.1	AT1G32170.1	****	xyloglucan endotransglucosylase/hydrolase 30 LENGTH=343	IPR010713 (Xyloglucan endo-transglycosylase, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf03018g13022.1	AT4G10300.1	***-	RmlC-like cupins superfamily protein LENGTH=134	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf05732g01004.1	ref|WP_026720334.1|	--*-	fibrillin [Fischerella sp. PCC 9431]	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf08065g00012.1	sp|Q9SZL7|FRS9_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 9		
Niben101Scf00635g05009.1	sp|Q3SZ71|MPPB_BOVIN	****	Mitochondrial-processing peptidase subunit beta	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0046872 (metal ion binding)
Niben101Scf04044g18003.1			Unknown protein		
Niben101Scf08391g01017.1	sp|O49006|PME3_ARATH	*-**	Pectinesterase/pectinesterase inhibitor 3	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02657g00010.1	sp|P15461|2SS5_HELAN	--*-	2S seed storage protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00471g03014.1	AT1G61800.1	***-	glucose-6-phosphate/phosphate translocator 2 LENGTH=388	IPR004696 (Triose phosphate/phosphoenolpyruvate translocator), IPR004853 (Triose-phosphate transporter domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf02626g00011.1	sp|Q3E902|RS212_ARATH	*-*-	40S ribosomal protein S21-2	IPR000620 (EamA domain), IPR001931 (Ribosomal protein S21e), IPR030184 (WAT1-related protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf02338g00001.1	gb|AES59290.2|	*-**	RNA-binding KH domain protein [Medicago truncatula]	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf14310g00012.1	AT2G22590.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=470	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01596g11003.1	sp|O81210|RBOHC_ARATH	*-*-	Respiratory burst oxidase homolog protein C	IPR013121 (Ferric reductase, NAD binding)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01001g01001.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02610g01012.1			Unknown protein		
Niben101Scf00225g05009.1	AT4G14605.1	*-**	Mitochondrial transcription termination factor family protein LENGTH=493	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00487g00014.1	ref|NP_001233978.1|	*-*-	extensin-like protein Dif54 precursor [Solanum lycopersicum] emb|CAA67814.1| extensin-like protein Dif54 [Solanum lycopersicum]		
Niben101Scf04096g05004.1	ref|XP_002510814.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF51416.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02637g02013.1	sp|A6UWV8|RS5_META3	****	30S ribosomal protein S5	IPR000851 (Ribosomal protein S5), IPR014720 (Double-stranded RNA-binding domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf01817g00018.1	ref|XP_007040445.1|	*-*-	Ubiquitin ligase protein cop1, putative isoform 6 [Theobroma cacao] gb|EOY24946.1| Ubiquitin ligase protein cop1, putative isoform 6 [Theobroma cacao]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00095g05002.1			Unknown protein		
Niben101Scf01037g01017.1	AT4G22140.1	***-	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein LENGTH=234	IPR001025 (Bromo adjacent homology (BAH) domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf11260g00010.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf05816g00001.1	sp|Q8R7V4|RL3_CALS4	***-	50S ribosomal protein L3	IPR000597 (Ribosomal protein L3), IPR009000 (Translation protein, beta-barrel domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf12639g00004.1	sp|Q6NPN3|C3H58_ARATH	***-	Zinc finger CCCH domain-containing protein 58	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf04528g04004.1	sp|F4IWA8|TBL41_ARATH	***-	Protein trichome birefringence-like 41	IPR026057 (PC-Esterase)	
Niben101Scf03295g07005.1	sp|Q9LJP1|GRIP4_ARATH	*-*-	GDSL esterase/lipase 4	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00132g01013.1			Unknown protein		
Niben101Scf05087g07006.1			Unknown protein		
Niben101Scf02705g02022.1	sp|O23547|EXLB1_ARATH	***-	Expansin-like B1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region)
Niben101Scf00709g01002.1	AT3G49950.1	***-	GRAS family transcription factor LENGTH=410	IPR005202 (Transcription factor GRAS)	
Niben101Scf00181g02002.1	AT3G02800.1	****	Tyrosine phosphatase family protein LENGTH=203	IPR004861 (Protein-tyrosine phosphatase, SIW14-like), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf08030g02003.1	sp|Q9XIE3|HS17A_ARATH	*-*-	17.6 kDa class I heat shock protein 1	IPR008978 (HSP20-like chaperone)	
Niben101Scf00069g09006.1	sp|Q9FLG1|BXL4_ARATH	***-	Beta-D-xylosidase 4	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026891 (Fibronectin type III-like domain), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02017g00009.1	ref|XP_003626920.1|	--**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf07788g03008.1	sp|Q0WPZ6|PP158_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf12765g01017.1	sp|A8MQA3|PP330_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf10498g00017.1	sp|Q8SQ27|RBM12_MACMU	*-**	RNA-binding protein 12	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00854g06028.1	gb|ACX55038.1|	--*-	pG1 protein [Bacillus amyloliquefaciens]		
Niben101Scf04473g14015.1	sp|Q9LGU6|METK3_ORYSJ	****	S-adenosylmethionine synthase 3	IPR002133 (S-adenosylmethionine synthetase)	GO:0004478 (methionine adenosyltransferase activity), GO:0005524 (ATP binding), GO:0006556 (S-adenosylmethionine biosynthetic process)
Niben101Scf01748g02002.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06846g00002.1	ref|XP_002533660.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF28719.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05348g02002.1	sp|A7FHJ7|MDTK_YERP3	*-*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00560g11005.1	sp|Q8L868|E1311_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 11	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01005g00015.1	gb|KEH33178.1|	*-*-	leguminosin group485 secreted peptide [Medicago truncatula]		
Niben101Scf01423g04006.1	ref|XP_007045750.1|	***-	18S pre-rib gar2-related, putative isoform 2 [Theobroma cacao]		
Niben101Scf02297g02006.1			Unknown protein		
Niben101Scf10798g00008.1	ref|NP_001050398.2|	--*-	[Oryza sativa Japonica Group] dbj|BAF12312.2| [Oryza sativa Japonica Group]	IPR008906 (HAT dimerisation domain, C-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0046983 (protein dimerization activity)
Niben101Scf02828g04009.1	sp|B4LMA2|EAF_DROVI	*-**	Ell-associated factor Eaf	IPR019194 (Transcription elognation factor  Eaf, N-terminal), IPR027093 (EAF family)	GO:0006355 (regulation of transcription, DNA-templated), GO:0032783 (ELL-EAF complex)
Niben101Ctg13560g00003.1	sp|Q96512|PER9_ARATH	*-**	Peroxidase 9	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03304g01025.1	sp|Q9FKF0|RTL3_ARATH	*-**	Ribonuclease 3-like protein 3	IPR001650 (Helicase, C-terminal), IPR003100 (PAZ domain), IPR005034 (Dicer dimerisation domain), IPR011907 (Ribonuclease III), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006396 (RNA processing), GO:0016075 (rRNA catabolic process), GO:0016891 (endoribonuclease activity, producing 5'-phosphomonoesters)
Niben101Scf13995g00004.1	sp|P0CY44|NU4M_NEUCR	*-*-	NADH-ubiquinone oxidoreductase chain 4	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf07152g04003.1	sp|Q9FLS0|FB253_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf04704g00003.1	AT3G57880.1	*-**	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein LENGTH=773	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf05710g03024.1	AT3G22960.1	****	Pyruvate kinase family protein LENGTH=596	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf01740g15005.1	gb|KEH24534.1|	***-	stress regulated protein [Medicago truncatula]		
Niben101Scf01842g06010.1	sp|Q09WV7|YCF2_MORIN	*-*-	Protein Ycf2		
Niben101Scf03444g01007.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf14922g00005.1	sp|Q2V3E2|YIPL5_ARATH	*-*-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf00304g02002.1	sp|Q9ZQG9|E1314_ARATH	***-	Glucan endo-1,3-beta-glucosidase 14	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf20924g01009.1	sp|Q9HCK8|CHD8_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 8	IPR000330 (SNF2-related), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf02548g04009.1	sp|Q9SVP7|PP307_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf22134g00004.1	sp|Q9LEX0|P2A13_ARATH	***-	F-box protein PP2-A13	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf00809g00007.1	ref|XP_003590809.1|	***-	Tetratricopeptide repeat protein 7B [Medicago truncatula] gb|AES61060.1| TPR 7B-like protein [Medicago truncatula]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05750g03019.1	gb|AES87033.2|	*-*-	DUF674 family protein [Medicago truncatula]		
Niben101Scf01403g01004.1	gb|KEH31349.1|	***-	stress up-regulated Nod 19 protein [Medicago truncatula]	IPR011692 (Stress up-regulated Nod 19)	
Niben101Scf00094g00009.1	sp|P43177|BEV1D_BETPN	***-	Major pollen allergen Bet v 1-D/H	IPR000916 (Bet v I domain), IPR023393 (START-like domain), IPR024949 (Bet v I type allergen)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf10940g01002.1			Unknown protein		
Niben101Scf14412g00016.1			Unknown protein		
Niben101Scf03510g01007.1	sp|Q9SLH0|EIL1_ARATH	*-*-	ETHYLENE INSENSITIVE 3-like 1 protein		
Niben101Scf09592g00002.1	sp|O00566|MPP10_HUMAN	*-*-	U3 small nucleolar ribonucleoprotein protein MPP10	IPR007151 (Mpp10 protein)	
Niben101Scf01656g00016.1	gb|KGO69179.1|	*-*-	Major facilitator superfamily domain, general substrate transporter [Penicillium italicum]	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf13530g01009.1	AT5G38630.1	***-	cytochrome B561-1 LENGTH=230	IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf05047g04023.1			Unknown protein		
Niben101Scf04294g04016.1	AT4G38370.1	*-*-	Phosphoglycerate mutase family protein LENGTH=225	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf05011g01007.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf02639g02003.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Ctg14800g00002.1			Unknown protein		
Niben101Scf37900g00009.1	sp|Q2HIM5|MMGT_ARATH	***-	Membrane magnesium transporter	IPR018937 (Magnesium transporter)	
Niben101Scf29514g00001.1	sp|Q43111|PME3_PHAVU	*-**	Pectinesterase 3	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf03977g02003.1	emb|CDX79146.1|	***-	BnaA01g12130D [Brassica napus]		
Niben101Scf00271g07025.1	AT2G34790.1	****	FAD-binding Berberine family protein LENGTH=532	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf15809g06006.1	ref|NP_001289833.1|	****	sodium transporter HKT1 [Solanum lycopersicum] emb|CDI45387.1| membrane Na+ transporter [Solanum lycopersicum]	IPR003445 (Cation transporter)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02525g01006.1	AT1G04430.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=623	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02291g01001.1	sp|Q3EBI7|FB130_ARATH	*-*-	F-box protein	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015916 (Galactose oxidase, beta-propeller), IPR017451 (F-box associated interaction domain)	
Niben101Scf02480g02013.1	AT5G11850.1	****	Protein kinase superfamily protein LENGTH=880	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03352g01001.1	sp|Q05085|PTR7_ARATH	***-	Protein NRT1/ PTR FAMILY 6.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf10278g00004.1	sp|Q7T0B0|STK40_XENLA	*-**	Serine/threonine-protein kinase 40	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04030g01009.1	emb|CDX72709.1|	***-	BnaC07g47310D [Brassica napus]		
Niben101Scf01209g01001.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01316g00002.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03444g04003.1	sp|Q9SK27|ENL1_ARATH	--*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	
Niben101Scf01956g03009.1	sp|Q9SZL8|FRS5_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 5		
Niben101Scf05824g02004.1	sp|P54772|DCHS_SOLLC	***-	Histidine decarboxylase	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf09710g00027.1			Unknown protein		
Niben101Scf01919g01007.1	ref|NP_001175326.1|	--*-	[Oryza sativa Japonica Group] dbj|BAH94054.1| [Oryza sativa Japonica Group]	IPR026960 (Reverse transcriptase zinc-binding domain)	
Niben101Scf00613g05016.1	sp|O24160|TGA21_TOBAC	*-**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00133g09001.1	sp|Q0GZS3|USP_CUCME	*-*-	UDP-sugar pyrophosphorylase	IPR002618 (UTP--glucose-1-phosphate uridylyltransferase family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0008152 (metabolic process), GO:0070569 (uridylyltransferase activity)
Niben101Scf01798g04007.1	sp|Q5ZK17|SETD6_CHICK	--*-	N-lysine methyltransferase SETD6		
Niben101Scf06193g02024.1	sp|Q8LDW9|XTH9_ARATH	*-**	Xyloglucan endotransglucosylase/hydrolase protein 9	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04113g12011.1	sp|Q9LN49|KCS4_ARATH	*-*-	3-ketoacyl-CoA synthase 4	IPR013601 (FAE1/Type III polyketide synthase-like protein)	GO:0006633 (fatty acid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf32055g00003.1	gb|KEH36694.1|	***-	F-box/LRR protein [Medicago truncatula]		
Niben101Scf00501g00007.1	sp|O14240|EAF6_SCHPO	*-*-	Chromatin modification-related protein eaf6	IPR015418 (Histone H4 acetyltransferase, NuA4 complex, Eaf6)	
Niben101Scf03106g02016.1	ref|XP_007044454.1|	***-	ARM repeat superfamily protein, putative isoform 6 [Theobroma cacao] gb|EOY00286.1| ARM repeat superfamily protein, putative isoform 6 [Theobroma cacao]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf18107g00014.1	sp|Q944I4|GLYK_ARATH	***-	D-glycerate 3-kinase, chloroplastic	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf06391g00006.1	emb|CDX73668.1|	***-	BnaC08g23350D [Brassica napus]		
Niben101Ctg14904g00003.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01847g09009.1	sp|P83332|TLP1_PRUPE	***-	Thaumatin-like protein 1	IPR001938 (Thaumatin)	
Niben101Scf10217g02010.1	sp|Q9LT81|C3H39_ARATH	***-	Zinc finger CCCH domain-containing protein 39	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf02575g03008.1	ref|XP_002524915.1|	****	Ph phosphatase PTEN, putative [Ricinus communis]	IPR000008 (C2 domain), IPR016130 (Protein-tyrosine phosphatase, active site), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0005515 (protein binding), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf05118g04016.1	ref|XP_007026310.1|	*-*-	NADH-ubiquinone oxidoreductase 21 kDa subunit [Theobroma cacao] gb|EOY28932.1| NADH-ubiquinone oxidoreductase 21 kDa subunit [Theobroma cacao]		
Niben101Scf03733g06006.1	sp|P81394|MYB15_ANTMA	*-*-	Myb-related protein 315	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf10176g00003.1	emb|CDY65949.1|	*-*-	BnaC02g45680D [Brassica napus]		
Niben101Scf02160g06052.1	ATMG00090.1	*-**	structural constituent of ribosome;protein binding chrM:25482-28733 REVERSE LENGTH=556	IPR000114 (Ribosomal protein L16), IPR001351 (Ribosomal protein S3, C-terminal), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf07829g03018.1	sp|O49816|LEA1_CICAR	***-	Late embryogenesis abundant protein 1		
Niben101Scf02182g07004.1	ref|NP_001059333.1|	***-	OsJ_23780 [Oryza sativa Japonica Group]		
Niben101Scf04819g02019.1	sp|Q7ZZY3|TOB1B_XENLA	*-**	DNA topoisomerase 2-binding protein 1-B	IPR001357 (BRCT domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00682g05011.1	sp|Q5ZL00|EMC1_CHICK	****	ER membrane protein complex subunit 1	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR011678 (Domain of unknown function DUF1620), IPR026895 (ER membrane protein complex subunit 1)	GO:0072546 (ER membrane protein complex)
Niben101Scf08926g01019.1	AT3G54200.1	*-*-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=235	IPR004864 (Late embryogenesis abundant protein, LEA-14), IPR013783 (Immunoglobulin-like fold)	
Niben101Scf05374g03004.1	AT5G65180.1	*-*-	ENTH/VHS family protein LENGTH=439		
Niben101Scf04422g00010.1	sp|Q08891|FACR2_ARATH	****	Fatty acyl-CoA reductase 2	IPR016040 (NAD(P)-binding domain), IPR026055 (Fatty acyl-CoA reductase)	GO:0080019 (fatty-acyl-CoA reductase (alcohol-forming) activity)
Niben101Scf03031g04012.1	AT1G05460.1	***-	P-loop containing nucleoside triphosphate hydrolases superfamily protein LENGTH=1002	IPR026127 (Probable RNA helicase SDE3), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf13167g01011.1	emb|CAC12820.1|	***-	mitochondrial 2-oxoglutarate/malate carrier protein [Nicotiana tabacum]		
Niben101Scf11305g01008.1	sp|Q9FYC2|PAO_ARATH	****	Pheophorbide a oxygenase, chloroplastic	IPR013626 (Pheophorbide a oxygenase), IPR017941 (Rieske [2Fe-2S] iron-sulphur domain)	GO:0010277 (chlorophyllide a oxygenase [overall] activity), GO:0016491 (oxidoreductase activity), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00449g04015.1	AT2G39510.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=374	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf02240g06015.1	sp|Q5ZJF4|PRDX6_CHICK	****	Peroxiredoxin-6	IPR012336 (Thioredoxin-like fold)	GO:0051920 (peroxiredoxin activity), GO:0055114 (oxidation-reduction process)
Niben101Scf16332g01002.1	sp|Q20365|RAB33_CAEEL	*-*-	Ras-related protein Rab-33	IPR001806 (Small GTPase superfamily), IPR025662 (Sigma-54 interaction domain, ATP-binding site 1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf00809g00008.1	sp|A4QNC6|F136A_XENTR	***-	Protein FAM136A	IPR008560 (Protein of unknown function DUF842, eukaryotic)	
Niben101Scf02290g05013.1	sp|Q9D554|SF3A3_MOUSE	*-*-	Splicing factor 3A subunit 3	IPR000690 (Zinc finger, C2H2-type matrin), IPR021966 (Splicing factor SF3a60 binding domain), IPR024598 (Domain of unknown function DUF3449)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf04044g07022.1	AT5G05690.1	***-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01445g00016.1	sp|P43157|CYSP_SCHJA	*-**	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf03222g00005.1	sp|O48781|SPX2_ARATH	***-	SPX domain-containing protein 2	IPR004331 (SPX, N-terminal)	
Niben101Scf09317g02012.1	sp|Q43804|OLEO1_PRUDU	***-	Oleosin 1	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf03600g02008.1			Unknown protein		
Niben101Scf05506g06008.1	sp|P41755|DHE2_ACHKL	*-*-	NAD-specific glutamate dehydrogenase	IPR019651 (Glutamate dehydrogenase, NAD-specific)	
Niben101Scf01482g01007.1	AT3G16857.2	*-*-	response regulator 1 LENGTH=690	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01184g17001.1	AT4G35160.1	****	O-methyltransferase family protein LENGTH=382	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf02386g00005.1	sp|Q86AV6|CISYC_DICDI	***-	Citrate synthase	IPR002020 (Citrate synthase-like)	GO:0006099 (tricarboxylic acid cycle), GO:0044262 (cellular carbohydrate metabolic process), GO:0046912 (transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer)
Niben101Scf07793g01012.1	AT5G52820.1	***-	WD-40 repeat family protein / notchless protein, putative LENGTH=473	IPR012972 (NLE), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf03546g00003.1	gb|AAP53866.2|	*-*-	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf04113g12010.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf06725g01015.1	sp|F4K687|NMNAT_ARATH	***-	Nicotinamide mononucleotide adenylyltransferase	IPR005248 (Probable nicotinate-nucleotide adenylyltransferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0009435 (NAD biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf07304g07014.1	sp|P25250|CYSP2_HORVU	*-*-	Cysteine proteinase EP-B 2	IPR001267 (Thymidine kinase)	GO:0004797 (thymidine kinase activity), GO:0005524 (ATP binding)
Niben101Scf03038g01008.1	sp|P82787|DEF19_ARATH	***-	Defensin-like protein 19	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf02679g00002.1	sp|Q9ZVX5|PP156_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf36369g00002.1	sp|Q920A5|RISC_MOUSE	*-*-	Retinoid-inducible serine carboxypeptidase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01688g02004.1	gb|AAU90303.2|	***-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf06562g02004.1	tpg|DAA45226.1|	--**	TPA: putative DNA-directed RNA polymerase family protein [Zea mays]	IPR015699 (DNA-directed RNA pol I, largest subunit)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf35637g00001.1	sp|Q9SI78|PPR93_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf11253g05008.1	sp|Q6NRL1|AGAP1_XENLA	*-**	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf08263g03012.1	sp|Q8BSI6|R3HC1_MOUSE	--*-	R3H and coiled-coil domain-containing protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf02164g01002.1	AT2G33570.1	***-	Domain of unknown function (DUF23) LENGTH=496	IPR008166 (Domain of unknown function DUF23)	
Niben101Scf08137g01020.1	sp|Q9FWA6|PP207_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05711g02021.1	ref|XP_007029088.1|	*-*-	Ubiquitin carboxyl-terminal hydrolase family protein [Theobroma cacao] gb|EOY09590.1| Ubiquitin carboxyl-terminal hydrolase family protein [Theobroma cacao]	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf02351g02003.1	sp|P61028|RAB8B_MOUSE	***-	Ras-related protein Rab-8B	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf11124g01044.1	sp|Q9SZ20|PP339_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02795g00008.1	sp|P09144|PSAB_CHLRE	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00245g02002.1	sp|Q9FJJ4|FB298_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00244g01008.1	sp|P08548|LIN1_NYCCO	--*-	LINE-1 reverse transcriptase homolog		
Niben101Scf02078g00001.1	sp|Q570N1|PP2B3_ARATH	*-*-	F-box protein PP2-B3	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf23099g00001.1	gb|AIF76113.1|	****	cytochrome c biogenesis B, partial (mitochondrion) [Halodule pinifolia]	IPR003544 (Cytochrome c-type biogenesis protein CcmB)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf04815g01023.1	AT1G56460.2	*-*-	HIT zinc finger ;PAPA-1-like conserved region LENGTH=532	IPR006880 (INO80 complex subunit B-like conserved region), IPR007529 (Zinc finger, HIT-type), IPR029523 (INO80 complex, subunit Ies2)	GO:0006338 (chromatin remodeling), GO:0006355 (regulation of transcription, DNA-templated), GO:0031011 (Ino80 complex)
Niben101Scf05391g03003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06382g02017.1	sp|Q6P606|LYSM4_DANRE	*-*-	LysM and putative peptidoglycan-binding domain-containing protein 4	IPR018392 (LysM domain)	
Niben101Scf10865g00010.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2		
Niben101Scf01212g01008.1	sp|P27482|CALL3_HUMAN	--*-	Calmodulin-like protein 3	IPR004837 (Sodium/calcium exchanger membrane region), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02605g01002.1			Unknown protein		
Niben101Scf02622g09005.1	sp|Q1RJT3|ODP2_RICBR	***-	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	IPR000089 (Biotin/lipoyl attachment), IPR001078 (2-oxoacid dehydrogenase acyltransferase, catalytic domain), IPR004167 (E3-binding domain), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf07172g00020.1	AT3G19240.1	***-	Vacuolar import/degradation, Vid27-related protein LENGTH=648	IPR013863 (Vacuolar import/degradation, Vid27-related), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf07161g00011.1	AT4G13930.1	****	serine hydroxymethyltransferase 4 LENGTH=471	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf17122g00007.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00753g03018.1	sp|Q8RWD0|COL16_ARATH	****	Zinc finger protein CONSTANS-LIKE 16	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf05617g01004.1	sp|Q08853|ATC_PLAFK	*-*-	Calcium-transporting ATPase	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf00021g00006.1	sp|Q5NRN4|CASP2_SOLDE	***-	Casparian strip membrane protein 2	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf04133g02029.1	sp|Q9FLJ2|NC100_ARATH	***-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02632g04010.1	AT5G08160.1	****	serine/threonine protein kinase 3 LENGTH=347	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02509g02008.1	AT3G24600.1	*-*-	Late embryogenesis abundant protein, group 2 LENGTH=506		
Niben101Scf05890g02010.1	sp|Q6CQI9|RKM5_KLULA	-**-	Ribosomal lysine N-methyltransferase 5	IPR019410 (Nicotinamide N-methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf09648g03008.1	AT5G49220.1	*-*-	Protein of unknown function (DUF789) LENGTH=409	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf02832g02014.1	sp|Q81CK1|KYNB_BACCR	****	Kynurenine formamidase	IPR007325 (Kynurenine formamidase)	GO:0004061 (arylformamidase activity), GO:0019441 (tryptophan catabolic process to kynurenine)
Niben101Scf02139g02011.1	AT2G36970.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=490	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01390g01002.1	sp|P24759|ATI_VACCW	--*-	A-type inclusion protein A25	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf03805g01004.1			Unknown protein		
Niben101Scf07019g02006.1	sp|Q9LYK2|NRT27_ARATH	***-	High affinity nitrate transporter 2.7	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00739g01009.1	AT4G26610.1	****	D6 protein kinase like 1 LENGTH=506	IPR011009 (Protein kinase-like domain), IPR011993 (Pleckstrin homology-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00180g02006.1	ref|XP_003593477.1|	***-	Lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf02581g03013.1	sp|Q8NFU5|IPMK_HUMAN	*-**	Inositol polyphosphate multikinase	IPR005522 (Inositol polyphosphate kinase)	GO:0008440 (inositol-1,4,5-trisphosphate 3-kinase activity)
Niben101Scf00133g04003.1	AT3G56080.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=610	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf11491g02045.1	sp|Q64QS2|SYH_BACFR	****	Histidine--tRNA ligase	IPR004516 (Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit)	GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004821 (histidine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006427 (histidyl-tRNA aminoacylation)
Niben101Scf16145g00002.1	ref|NP_001046368.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf00595g07010.1	AT5G23870.3	***-	Pectinacetylesterase family protein LENGTH=451	IPR004963 (Protein notum homologue)	
Niben101Scf16292g00004.1	sp|Q5KUJ8|NUOD_GEOKA	****	NADH-quinone oxidoreductase subunit D	IPR014029 (NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site), IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05972g01001.1	sp|Q2V3I3|EPFL4_ARATH	*-*-	EPIDERMAL PATTERNING FACTOR-like protein 4		
Niben101Scf04124g05023.1	ref|WP_020238864.1|	-**-	Holliday junction resolvase [Escherichia coli]	IPR005227 (Resolvase, holliday junction-type, YqgF-like), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005737 (cytoplasm), GO:0006139 (nucleobase-containing compound metabolic process), GO:0006281 (DNA repair), GO:0006310 (DNA recombination), GO:0006974 (cellular response to DNA damage stimulus), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00690g00013.1	sp|Q8S9L6|CRK29_ARATH	*-**	Cysteine-rich receptor-like protein kinase 29	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04505g07010.1	AT2G42260.1	*-*-	uv-b-insensitive 4 LENGTH=259		
Niben101Scf02653g06003.1	AT3G50120.1	***-	Plant protein of unknown function (DUF247) LENGTH=531	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf02297g02005.1	AT3G15355.1	*-*-	ubiquitin-conjugating enzyme 25 LENGTH=609	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf25141g00001.1	sp|Q08649|ESA1_YEAST	***-	Histone acetyltransferase ESA1	IPR016181 (Acyl-CoA N-acyltransferase), IPR016197 (Chromo domain-like), IPR025995 (RNA binding activity-knot of a chromodomain)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00375g00009.1	sp|Q9LZS7|GDL71_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf02014g00021.1	sp|P52409|E13B_WHEAT	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Ctg00054g00001.1	sp|Q9LDE4|ERF83_ARATH	--**	Ethylene-responsive transcription factor 7	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02000g00005.1	AT4G35270.1	***-	Plant regulator RWP-RK family protein LENGTH=963	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain), IPR029016 (GAF domain-like)	GO:0005515 (protein binding)
Niben101Scf00096g04005.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf00117g01001.1	emb|CDX94943.1|	***-	BnaC05g07280D [Brassica napus]		
Niben101Scf03175g01014.1	sp|F4I1T7|NP214_ARATH	*-*-	Nuclear pore complex protein NUP214		
Niben101Scf09962g01001.1	sp|Q9ZVE0|ORN_ARATH	--*-	Oligoribonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf06248g01002.1	gb|KEH32189.1|	*-*-	heavy metal-associated domain protein [Medicago truncatula]		
Niben101Scf04954g02003.1	sp|P0C2F6.1|RNHX1_ARATH	--*-	RecName: Full=Putative ribonuclease H protein [Arabidopsis thaliana]		
Niben101Scf01283g02029.1	gb|AAG51783.1|AC079679_3	--*-	reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]		
Niben101Scf04861g01009.1	sp|Q8C5L7|RBM34_MOUSE	*-**	RNA-binding protein 34	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf12469g01009.1	sp|Q8W246|ZIP7_ARATH	****	Zinc transporter 7	IPR003689 (Zinc/iron permease)	GO:0005385 (zinc ion transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport), GO:0071577 (zinc ion transmembrane transport)
Niben101Scf10085g01005.1	sp|Q5KYK0|IOLA3_GEOKA	*-**	Methylmalonate semialdehyde dehydrogenase [acylating] 3	IPR010061 (Methylmalonate-semialdehyde dehydrogenase), IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0004491 (methylmalonate-semialdehyde dehydrogenase (acylating) activity), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf16244g00001.1	sp|Q9LDH1|SIB1_ARATH	*-*-	Sigma factor binding protein 1, chloroplastic	IPR008889 (VQ)	
Niben101Scf18660g00007.1	sp|Q84JG2|SWI3B_ARATH	***-	SWI/SNF complex subunit SWI3B	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04240g03010.1	AT5G65650.1	***-	Protein of unknown function (DUF1195) LENGTH=185	IPR010608 (Protein of unknown function DUF1195)	
Niben101Scf00428g14006.1			Unknown protein		
Niben101Scf02929g01022.1	ref|XP_002536345.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF26037.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07314g00002.1	dbj|BAM28759.1|	*-*-	ROX1 homologue [Nicotiana tabacum]		
Niben101Scf04995g11014.1	AT3G28740.1	*-*-	Cytochrome P450 superfamily protein LENGTH=509	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04038g03001.1			Unknown protein		
Niben101Scf02248g01001.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf11424g02002.1	gb|KEH17310.1|	****	O-acyltransferase WSD1-like protein [Medicago truncatula]	IPR004255 (O-acyltransferase, WSD1, N-terminal), IPR009721 (O-acyltransferase, WSD1, C-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity), GO:0045017 (glycerolipid biosynthetic process)
Niben101Scf02644g00001.1	AT5G26780.3	*-**	serine hydroxymethyltransferase 2 LENGTH=533	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf11723g01001.1	AT2G48080.1	*-*-	oxidoreductase, 2OG-Fe(II) oxygenase family protein LENGTH=438		
Niben101Scf15187g00005.1	AT3G22270.1	***-	Topoisomerase II-associated protein PAT1 LENGTH=782		
Niben101Scf03706g00004.1	sp|P48768|NAC2_RAT	*-*-	Sodium/calcium exchanger 2	IPR004837 (Sodium/calcium exchanger membrane region)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf08488g03001.1	sp|D8QNI1|CSPLH_SELML	***-	CASP-like protein 5A1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf11737g00013.1	sp|Q9FRI5|PPR57_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf03469g02003.1	AT5G48720.2	***-	x-ray induced transcript 1 LENGTH=300		
Niben101Scf09561g00003.1	sp|O42993|FKBP_SCHPO	--*-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf05692g07010.1	sp|B8GXP4|GRPE_CAUCN	*-*-	Protein GrpE	IPR000740 (GrpE nucleotide exchange factor)	GO:0000774 (adenyl-nucleotide exchange factor activity), GO:0006457 (protein folding), GO:0042803 (protein homodimerization activity), GO:0051087 (chaperone binding)
Niben101Scf06221g04016.1	sp|Q31IV9|RS4_THICR	--*-	30S ribosomal protein S4	IPR001457 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 6), IPR002942 (RNA-binding S4 domain), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding), GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04675g09007.1	AT5G26010.1	***-	Protein phosphatase 2C family protein LENGTH=331	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf11512g01019.1	sp|Q70Z17|NAP1C_TOBAC	****	Nucleosome assembly protein 1;3	IPR002164 (Nucleosome assembly protein (NAP))	GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf03479g05050.1	sp|Q9C866|PPR65_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06514g02001.1	sp|Q03164|KMT2A_HUMAN	*-*-	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR001810 (F-box domain), IPR003169 (GYF)	GO:0005515 (protein binding)
Niben101Scf18822g02005.1	sp|Q9Y2V7|COG6_HUMAN	****	Conserved oligomeric Golgi complex subunit 6	IPR010490 (Conserved oligomeric Golgi complex subunit 6)	GO:0006891 (intra-Golgi vesicle-mediated transport), GO:0017119 (Golgi transport complex)
Niben101Scf05588g11009.1			Unknown protein		
Niben101Scf06382g03012.1	gb|ABN09044.1|	****	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf04804g01016.1	sp|Q66HG1|DMTF1_RAT	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03209g00031.1	sp|O95563|MPC2_HUMAN	****	Mitochondrial pyruvate carrier 2	IPR005336 (Mitochondrial pyruvate carrier)	GO:0005743 (mitochondrial inner membrane), GO:0006850 (mitochondrial pyruvate transport)
Niben101Scf02262g01019.1	sp|A5GQN5|AROK_SYNR3	--**	Shikimate kinase	IPR000623 (Shikimate kinase/Threonine synthase-like 1), IPR006001 (Carbohydrate kinase, thermoresistant glucokinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005975 (carbohydrate metabolic process), GO:0016301 (kinase activity)
Niben101Scf10708g02008.1	sp|B0Z4M2|PSBD_OENAR	*-**	Photosystem II D2 protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf03619g05001.1	sp|Q39644|LEA5_CITSI	*-*-	Late embryogenesis abundant protein Lea5	IPR004926 (Late embryogenesis abundant protein, LEA-5)	GO:0006950 (response to stress)
Niben101Scf08047g03019.1	sp|Q0IQU1|LAC22_ORYSJ	***-	Laccase-22	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00046g04025.1	AT3G27460.1	***-	SGF29 tudor-like domain LENGTH=270	IPR010750 (SGF29 tudor-like domain)	
Niben101Scf01954g00002.1	sp|Q9LVF9|PP245_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf10722g00009.1	sp|Q9FZ52|FDL3_ARATH	--*-	F-box/FBD/LRR-repeat protein	IPR006566 (FBD domain)	
Niben101Scf06682g00002.1	sp|O54748|STK3_RAT	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09989g01004.1	ref|XP_002526600.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35759.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01933g14001.1	ref|WP_013413882.1|	****	arsenic transporter ATPase [Methanothermus fervidus] ref|YP_004004366.1| arsenite efflux ATP-binding protein arsa [Methanothermus fervidus DSM 2088] gb|ADP77604.1| arsenite efflux ATP-binding protein ArsA [Methanothermus fervidus DSM 2088]	IPR016300 (Arsenical pump ATPase, ArsA/GET3), IPR025723 (Anion-transporting ATPase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf15710g00010.1	sp|Q949Z1|PGLR4_ARATH	*-**	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01721g10011.1	AT4G31420.2	****	Zinc finger protein 622 LENGTH=405	IPR003604 (Zinc finger, U1-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf03563g00030.1	AT4G22120.1	***-	ERD (early-responsive to dehydration stress) family protein LENGTH=771	IPR003864 (Domain of unknown function DUF221), IPR027815 (Domain of unknown function DUF4463)	GO:0016020 (membrane)
Niben101Scf01177g06013.1	gb|KEH40872.1|	--*-	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf00298g02005.1	sp|Q5E9Z8|LSM1_BOVIN	*-*-	U6 snRNA-associated Sm-like protein LSm1	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf07226g08005.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf15100g00001.1	AT5G23160.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=271		
Niben101Scf01964g10013.1	sp|Q2NIJ6|Y630_AYWBP	*---	UPF0176 protein AYWB_630	IPR001763 (Rhodanese-like domain), IPR005645 (Serine hydrolase FSH), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04941g00002.1	AT5G43720.1	***-	Protein of unknown function (DUF2361) LENGTH=329	IPR019310 (rRNA-processing protein EFG1)	
Niben101Scf00907g00002.1	AT1G08470.1	****	strictosidine synthase-like 3 LENGTH=390	IPR004141 (Strictosidine synthase)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf13036g01001.1	dbj|BAF52855.1|	***-	repressor of silencing 1 [Nicotiana tabacum]	IPR011257 (DNA glycosylase), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal), IPR028924 (Permuted single zf-CXXC unit), IPR028925 (Demeter, RRM-fold domain)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf07347g00004.1	ref|XP_002534597.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF27784.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01773g07013.1	sp|Q2YKR3|ADEC_BRUA2	--*-	Adenine deaminase	IPR019331 (NEFA-interacting nuclear protein NIP30, N-terminal)	
Niben101Scf04641g00012.1	sp|Q94K41|SDR3B_ARATH	****	Short-chain dehydrogenase reductase 3b	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf05912g01009.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04708g00001.1	AT2G18570.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=470	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00545g00012.1	sp|Q8GYF7|NUP54_ARATH	****	Nuclear pore complex protein NUP54	IPR024864 (Nucleoporin Nup54/Nup57/Nup44), IPR025712 (Nucleoporin Nup54, alpha-helical domain)	GO:0005643 (nuclear pore)
Niben101Scf00606g01001.1	emb|CDX77961.1|	***-	BnaA09g31560D [Brassica napus]		
Niben101Scf00419g00022.1	AT5G44370.1	***-	phosphate transporter 4;6 LENGTH=432	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf06486g02005.1	sp|Q1PED9|FBL63_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf06769g01010.1	AT5G03720.1	****	heat shock transcription factor A3 LENGTH=412	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf14262g00002.1	sp|Q86MW9|SINA_SCHMA	****	E3 ubiquitin-protein ligase sina	IPR004162 (E3 ubiquitin-protein ligase SINA like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf07223g03022.1	ref|XP_007015162.1|	--*-	DNA binding,zinc ion binding,DNA binding, putative isoform 2 [Theobroma cacao] gb|EOY32781.1| DNA binding,zinc ion binding,DNA binding, putative isoform 2 [Theobroma cacao]		
Niben101Scf03208g02014.1	ref|XP_007034400.1|	***-	Type 1 membrane protein, putative isoform 1 [Theobroma cacao] gb|EOY05326.1| Type 1 membrane protein, putative isoform 1 [Theobroma cacao]		
Niben101Scf00911g01015.1			Unknown protein		
Niben101Scf00539g07015.1	sp|Q42403|TRXH3_ARATH	*-*-	Thioredoxin H3	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01269g06001.1	ref|XP_007040871.1|	*-*-	Embryo defective 3006, putative isoform 1 [Theobroma cacao] gb|EOY25372.1| Embryo defective 3006, putative isoform 1 [Theobroma cacao]		
Niben101Scf08308g04013.1	AT1G11260.1	*-**	sugar transporter 1 LENGTH=522	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02819g02011.1	sp|Q9D7H2|WDR5B_MOUSE	*-*-	WD repeat-containing protein 5B	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR027728 (Topless family)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00073g04006.1	AT4G18830.1	*-*-	ovate family protein 5 LENGTH=349	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf03028g03026.1	sp|A1EA25|PSBE_AGRST	*-*-	Cytochrome b559 subunit alpha	IPR013082 (Photosystem II cytochrome b559, alpha subunit, lumenal region)	GO:0009523 (photosystem II), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf08531g02001.1	sp|O49255|NAC29_ARATH	-***	NAC transcription factor 29	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08737g00004.1	AT3G22950.1	***-	ADP-ribosylation factor C1 LENGTH=183	IPR003579 (Small GTPase superfamily, Rab type), IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf01018g01009.1	AT5G48800.1	***-	Phototropic-responsive NPH3 family protein LENGTH=614	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf01671g06019.1	sp|C6BW69|TRUA_DESAD	****	tRNA pseudouridine synthase A	IPR001406 (Pseudouridine synthase I, TruA), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf05488g00018.1	sp|Q9SMK9|PAL2_CICAR	*-**	Phenylalanine ammonia-lyase 2	IPR001106 (Aromatic amino acid lyase), IPR008948 (L-Aspartase-like), IPR023144 (Phenylalanine ammonia-lyase, shielding domain)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf05080g01018.1	sp|Q9XTT8|PP4C2_CAEEL	***-	Serine/threonine-protein phosphatase 4 catalytic subunit 2	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf04079g02012.1	sp|O45685|MF2NB_CAEEL	--*-	Protein MEF2BNB homolog	IPR019320 (Uncharacterised protein family UPF0402)	
Niben101Scf04093g00019.1	AT2G40095.1	***-	Alpha/beta hydrolase related protein LENGTH=209	IPR019498 (MENTAL domain)	
Niben101Scf02264g05007.1	sp|Q0WMJ8|SIPL4_ARATH	****	Signal peptide peptidase-like 4	IPR003137 (Protease-associated domain, PA), IPR007369 (Peptidase A22B, signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf05764g04013.1	AT4G36380.1	***-	Cytochrome P450 superfamily protein LENGTH=524	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05855g03017.1	AT2G25290.1	*-*-	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein LENGTH=745		
Niben101Scf04627g02010.1	sp|A1SNK7|RL24_NOCSJ	--**	50S ribosomal protein L24	IPR005756 (Ribosomal protein L26/L24P, eukaryotic/archaeal), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf04763g02009.1	gb|AET00086.2|	***-	early nodulin-like protein [Medicago truncatula]	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf05922g01008.1			Unknown protein		
Niben101Scf33299g00003.1	gb|AFX95943.1|	***-	green-ripe like protein 1 [Solanum melongena]	IPR008496 (Protein of unknown function DUF778)	
Niben101Scf12364g00008.1	AT2G21100.1	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=187	IPR004265 (Plant disease resistance response protein)	
Niben101Scf10732g01018.1	gb|AFI44296.1|	*-**	transport membrane protein, partial (mitochondrion) [Silene vulgaris]	IPR002033 (Sec-independent periplasmic protein translocase TatC)	GO:0016021 (integral component of membrane)
Niben101Scf04420g02003.1	sp|Q0S0L7|KGUA_RHOJR	****	Guanylate kinase	IPR008144 (Guanylate kinase-like), IPR008145 (Guanylate kinase/L-type calcium channel beta subunit), IPR017665 (Guanylate kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004385 (guanylate kinase activity), GO:0006163 (purine nucleotide metabolic process)
Niben101Scf00542g06006.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf05304g05008.1	sp|Q9SMB4|PSBS_TOBAC	***-	Photosystem II 22 kDa protein, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf12504g00005.1	AT5G50740.3	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=290	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf05211g00001.1	emb|CDY27385.1|	***-	BnaC04g50200D [Brassica napus]		
Niben101Scf03405g02003.1	sp|Q3SZR8|SRSF3_BOVIN	*-*-	Serine/arginine-rich splicing factor 3	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01142g04009.1	sp|Q9LDE4|ERF83_ARATH	*-**	Ethylene-responsive transcription factor 7	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf12872g00006.1	sp|Q8L627|SRD2_ARATH	--*-	snRNA-activating protein complex subunit		
Niben101Scf08020g06001.1	ref|NP_181089.1|	***-	late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] gb|AAC36175.1| similar to harpin-induced protein hin1 from tobacco [Arabidopsis thaliana] gb|AEC09110.1| late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf05830g02006.1	ref|NP_001048145.1|	***-	product [Oryza sativa Japonica Group]	IPR008976 (Lipase/lipooxygenase, PLAT/LH2)	GO:0005515 (protein binding)
Niben101Scf03488g09011.1	sp|Q9FKB5|KRP3_ARATH	****	Cyclin-dependent kinase inhibitor 3	IPR003175 (Cyclin-dependent kinase inhibitor)	GO:0004861 (cyclin-dependent protein serine/threonine kinase inhibitor activity), GO:0005634 (nucleus), GO:0007050 (cell cycle arrest)
Niben101Scf01538g02003.1	sp|Q9LDN9|PER37_ARATH	--**	Peroxidase 37	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03634g08006.1	sp|O04621|TBL26_ARATH	***-	Protein trichome birefringence-like 26	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf00878g05001.1	ref|NP_001047633.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf01765g02008.1	sp|P0C8Q3|PP326_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03169g05007.1	emb|CDX88534.1|	***-	BnaC06g39780D [Brassica napus]		
Niben101Scf39377g00004.1	gb|KEH44548.1|	*-*-	pollen protein Ole E I-like protein [Medicago truncatula]		
Niben101Scf06650g00006.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02191g03003.1			Unknown protein		
Niben101Scf06674g05010.1	sp|Q9LEZ3|BIM1_ARATH	*-*-	Transcription factor BIM1	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00176g01012.1	sp|Q9SI78|PPR93_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00192g00001.1	sp|Q9LNB9|LBD2_ARATH	*-*-	LOB domain-containing protein 2	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf10026g02003.1	sp|Q05001|NCPR_CATRO	*-**	NADPH--cytochrome P450 reductase	IPR001433 (Oxidoreductase FAD/NAD(P)-binding), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04506g03012.1	sp|Q3AVR1|URE1_SYNS9	****	Urease subunit alpha	IPR002019 (Urease, beta subunit), IPR002026 (Urease, gamma/gamma-beta subunit), IPR005848 (Urease, alpha subunit), IPR008221 (Urease), IPR029754 (Urease nickel binding site)	GO:0006807 (nitrogen compound metabolic process), GO:0009039 (urease activity), GO:0016151 (nickel cation binding), GO:0016787 (hydrolase activity), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds), GO:0043419 (urea catabolic process)
Niben101Scf02853g06022.1	gb|KEH31737.1|	****	nucleotide-binding protein [Medicago truncatula]	IPR013923 (Autophagy-related protein 16), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf01740g15006.1	AT5G62990.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=494	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf00180g11025.1	AT1G20080.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=537	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf06727g00021.1	sp|Q9ZSK5|ZOG_PHALU	*-*-	Zeatin O-glucosyltransferase		
Niben101Scf12280g01011.1	AT1G16320.1	*-*-	Uncharacterized conserved protein (DUF2358) LENGTH=273		
Niben101Scf04174g00007.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00978g06005.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf04547g03003.1	AT5G06990.1	***-	Protein of unknown function, DUF617 LENGTH=261	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf13530g01008.1	sp|Q94AS5|ICME_ARATH	***-	Isoprenylcysteine alpha-carbonyl methylesterase ICME	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04703g06011.1	sp|Q9BTW9|TBCD_HUMAN	*-*-	Tubulin-specific chaperone D		
Niben101Scf10532g00015.1	emb|CDX99035.1|	***-	BnaC09g48000D [Brassica napus]		
Niben101Scf00568g04039.1	sp|P49387|RT14_BRANA	*-*-	Ribosomal protein S14, mitochondrial		
Niben101Scf00371g03001.1	sp|Q6PH57|GBB1_DANRE	*-**	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf02625g02001.1	sp|Q1BSD2|TRPC_BURCA	*-**	Indole-3-glycerol phosphate synthase	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004425 (indole-3-glycerol-phosphate synthase activity), GO:0006568 (tryptophan metabolic process), GO:0008152 (metabolic process)
Niben101Scf01818g06004.1	sp|P0C8N7|UCRI_SYNEL	*-**	Cytochrome b6-f complex iron-sulfur subunit	IPR014349 (Rieske iron-sulphur protein)	GO:0008121 (ubiquinol-cytochrome-c reductase activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0016679 (oxidoreductase activity, acting on diphenols and related substances as donors), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01978g00017.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02335g03002.1	sp|Q8C729|F126B_MOUSE	*-*-	Protein FAM126B	IPR018619 (Hyccin)	
Niben101Scf02812g03006.1	AT2G17500.1	***-	Auxin efflux carrier family protein LENGTH=396	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf30670g00007.1	sp|A7NS65|DNAJ_ROSCS	*-*-	Chaperone protein DnaJ	IPR001080 (3Fe-4S ferredoxin), IPR001623 (DnaJ domain), IPR017896 (4Fe-4S ferredoxin-type, iron-sulphur binding domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf04104g06006.1	emb|CDX92307.1|	***-	BnaA05g21000D [Brassica napus]		
Niben101Scf01316g00003.1	ref|XP_007047599.1|	***-	Thioredoxin superfamily protein [Theobroma cacao] gb|EOX91756.1| Thioredoxin superfamily protein [Theobroma cacao]		
Niben101Scf07965g02018.1	sp|Q9XHL7|TCTP_TOBAC	***-	Translationally-controlled tumor protein homolog	IPR018105 (Translationally controlled tumour protein)	
Niben101Scf34085g00001.1	sp|Q2QD89|PSAA_CUCSA	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf01314g00001.1	sp|P48978|PGLR_MALDO	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01209g01002.1	emb|CDX97947.1|	***-	BnaA06g06980D [Brassica napus]		
Niben101Scf00052g09012.1	sp|Q8W4P1|CDKC2_ARATH	*-*-	Cyclin-dependent kinase C-2		
Niben101Scf04267g00016.1	sp|Q68WZ0|RUVB_RICTY	-***	Holliday junction ATP-dependent DNA helicase RuvB	IPR008921 (DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0006260 (DNA replication)
Niben101Scf08308g04014.1	AT4G21480.1	****	sugar transporter protein 12 LENGTH=502	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03977g02004.1	sp|P0CL95|APTH1_CRYNB	***-	Acyl-protein thioesterase 1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf05656g01002.1	AT2G27820.1	****	prephenate dehydratase 1 LENGTH=424	IPR001086 (Prephenate dehydratase), IPR002912 (ACT domain)	GO:0004664 (prephenate dehydratase activity), GO:0008152 (metabolic process), GO:0009094 (L-phenylalanine biosynthetic process), GO:0016597 (amino acid binding)
Niben101Scf00157g06005.1	tpg|DAA35905.1|	*-*-	TPA: hypothetical protein ZEAMMB73_888269 [Zea mays]	IPR028222 (AP-5 complex subunit zeta-1)	GO:0044599 (AP-5 adaptor complex)
Niben101Scf12922g00020.1			Unknown protein		
Niben101Scf04396g04016.1	AT1G08720.1	****	Protein kinase superfamily protein LENGTH=933	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00355g01018.1	ref|NP_173819.2|	--*-	RNase H domain-containing protein [Arabidopsis thaliana] gb|AEE30476.1| RNase H domain-containing protein [Arabidopsis thaliana]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf20512g00005.1	gb|ADD31431.1|	*-*-	NADH-plastoquinone oxidoreductase subunit 1 protein (chloroplast) [Aucuba japonica]		
Niben101Scf12159g04001.1	sp|P41557|RPOB1_METVS	*-**	DNA-directed RNA polymerase subunit B'	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf02235g02002.1	emb|CDY53256.1|	***-	BnaA02g03980D [Brassica napus]		
Niben101Scf02133g08010.1	AT1G55840.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=325	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf00980g07009.1	AT3G03690.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=378	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf06436g05009.1			Unknown protein		
Niben101Scf05414g00002.1	ref|XP_007045807.1|	*-*-	Histone-lysine N-methyltransferase ATX1, putative isoform 1 [Theobroma cacao] gb|EOY01639.1| Histone-lysine N-methyltransferase ATX1, putative isoform 1 [Theobroma cacao]		
Niben101Scf04294g00011.1	AT1G20550.1	***-	O-fucosyltransferase family protein LENGTH=564	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf04435g00006.1	AT5G07990.1	*-*-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05149g00006.1	AT3G16510.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=360	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf04905g04003.1	sp|Q9FIX3|PP407_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf10940g02001.1	sp|P42211|ASPRX_ORYSJ	****	Aspartic proteinase	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf11008g04010.1	AT5G04160.1	***-	Nucleotide-sugar transporter family protein LENGTH=309	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf00854g05054.1			Unknown protein		
Niben101Scf03595g12004.1	sp|Q9SX20|PTR18_ARATH	***-	Protein NRT1/ PTR FAMILY 3.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf10390g00003.1	sp|P21874|ODPB_GEOSE	***-	Pyruvate dehydrogenase E1 component subunit beta	IPR005475 (Transketolase-like, pyrimidine-binding domain), IPR005476 (Transketolase, C-terminal), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf02803g03003.1			Unknown protein		
Niben101Scf05002g03027.1	ref|XP_002529925.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF32479.1| conserved hypothetical protein [Ricinus communis]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01002g08004.1	sp|P46903|NATA_BACSU	*-**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf01785g06011.1	sp|Q6UVM3|KCNT2_HUMAN	*-**	Potassium channel subfamily T member 2	IPR003280 (Two pore domain potassium channel), IPR018247 (EF-Hand 1, calcium-binding site)	GO:0005267 (potassium channel activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf05640g00003.1	sp|A4QK95|RPOC2_BARVE	*-**	DNA-directed RNA polymerase subunit beta''	IPR007081 (RNA polymerase Rpb1, domain 5), IPR007083 (RNA polymerase Rpb1, domain 4)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf00907g00003.1	gb|AAX38236.1|	****	strictosidine synthase family protein [Brassica napus]	IPR004141 (Strictosidine synthase)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf03160g02005.1	AT3G44380.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=186	IPR004864 (Late embryogenesis abundant protein, LEA-14)	GO:0009269 (response to desiccation)
Niben101Scf06655g00013.1	gb|KEH37012.1|	***-	E3 ubiquitin-protein ligase LIN-like protein, putative [Medicago truncatula]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf06383g00006.1	ref|XP_010090735.1|	--*-	RING-H2 finger protein ATL18 [Morus notabilis] gb|EXB40454.1| RING-H2 finger protein ATL18 [Morus notabilis]		
Niben101Scf01620g02013.1	sp|Q6CGL4|APTH1_YARLI	***-	Acyl-protein thioesterase 1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf00854g01021.1	gb|AEG80466.1|	*-*-	maturase, partial (mitochondrion) [Borago officinalis]		
Niben101Scf04741g04002.1	AT1G78540.2	***-	SH2 domain protein B LENGTH=696	IPR013320 (Concanavalin A-like lectin/glucanase domain)	
Niben101Scf05439g01001.1			Unknown protein		
Niben101Scf06998g00005.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03565g07023.1	AT5G04250.1	***-	Cysteine proteinases superfamily protein LENGTH=345	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf00080g05006.1	sp|Q42430|ZFP1_WHEAT	***-	Zinc finger protein 1	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01721g10012.1	AT4G31410.1	*-*-	Protein of unknown function (DUF1644) LENGTH=308	IPR012866 (Protein of unknown function DUF1644), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf02074g05084.1	sp|Q04574|POL1_BAYMG	--*-	Genome polyprotein 1		
Niben101Scf07201g01003.1	AT4G21380.1	*-*-	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like)	GO:0048544 (recognition of pollen)
Niben101Scf02759g01012.1	ref|XP_002532850.1|	*-**	nucleic acid binding protein, putative [Ricinus communis] gb|EEF29528.1| nucleic acid binding protein, putative [Ricinus communis]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02891g03011.1	sp|O14022|CTA5_SCHPO	****	Cation-transporting ATPase 5	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0006812 (cation transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0046872 (metal ion binding)
Niben101Scf01500g04011.1	sp|Q84JU6|HOS1_ARATH	***-	E3 ubiquitin-protein ligase HOS1	IPR001841 (Zinc finger, RING-type), IPR025151 (ELYS-like domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04703g08010.1			Unknown protein		
Niben101Scf02182g01014.1	AT5G04460.1	*-*-	RING/U-box superfamily protein LENGTH=863		
Niben101Scf10708g02007.1	ref|XP_005707831.1|	*-**	transferase, transferring glycosyl groups [Galdieria sulphuraria] gb|EME31311.1| transferase, transferring glycosyl groups [Galdieria sulphuraria]	IPR007657 (Glycosyltransferase AER61, uncharacterised)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf02792g02003.1			Unknown protein		
Niben101Scf12676g00006.1	sp|B7M7Q3|THIC_ECO8A	***-	Phosphomethylpyrimidine synthase	IPR002817 (Thiamine biosynthesis protein ThiC), IPR025747 (ThiC-associated domain)	GO:0009228 (thiamine biosynthetic process), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf22623g00010.1	sp|Q9FKB5|KRP3_ARATH	*-**	Cyclin-dependent kinase inhibitor 3	IPR003175 (Cyclin-dependent kinase inhibitor)	GO:0004861 (cyclin-dependent protein serine/threonine kinase inhibitor activity), GO:0005634 (nucleus), GO:0007050 (cell cycle arrest)
Niben101Scf03626g01015.1	sp|P17804|HSP70_LEIDO	*-*-	Heat shock 70 kDa protein	IPR002208 (SecY/SEC61-alpha family), IPR013126 (Heat shock protein 70 family), IPR023201 (SecY subunit domain), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf05177g02025.1	sp|P27726|G3P_PSEAE	***-	Glyceraldehyde-3-phosphate dehydrogenase	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf07755g00002.1	sp|Q9FYH7|VSR6_ARATH	***-	Vacuolar-sorting receptor 6	IPR003137 (Protease-associated domain, PA), IPR018097 (EGF-like calcium-binding, conserved site)	GO:0005509 (calcium ion binding)
Niben101Scf02625g00004.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10502g00010.1	sp|Q9LTH7|ACH12_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 12	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03039g03027.1	ref|XP_007023082.1|	*-*-	WD repeat-containing protein 49 isoform 2 [Theobroma cacao] gb|EOY25704.1| WD repeat-containing protein 49 isoform 2 [Theobroma cacao]		
Niben101Scf04187g00026.1	sp|Q93Y94|RPOT1_NICSY	****	DNA-directed RNA polymerase 1, mitochondrial	IPR002092 (DNA-directed RNA polymerase, phage-type), IPR024075 (DNA-directed RNA polymerase, helix hairpin domain), IPR029262 (DNA-directed RNA polymerase N-terminal domain)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf03878g01010.1			Unknown protein	IPR008889 (VQ)	
Niben101Scf01774g05015.1	sp|Q8T135|KIF5_DICDI	*-**	Kinesin-related protein 5	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf13694g00003.1	sp|Q7VJW2|DDL_HELHP	--*-	D-alanine--D-alanine ligase		
Niben101Scf10316g03004.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf03038g17021.1	sp|Q2MII6|YCF3_SOLBU	*-*-	Photosystem I assembly protein Ycf3		
Niben101Scf06814g01020.1	sp|Q08C72|CWC22_DANRE	***-	Pre-mRNA-splicing factor CWC22 homolog	IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Ctg15895g00001.1	AT2G01190.1	*-*-	Octicosapeptide/Phox/Bem1p family protein LENGTH=720	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf19230g01011.1	sp|Q8PV45|RL22_METMA	****	50S ribosomal protein L22	IPR001063 (Ribosomal protein L22/L17)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf01220g02008.1	sp|Q01593|ABI3_ARATH	*-*-	B3 domain-containing transcription factor ABI3	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf02348g06007.1	sp|P36917|XYNA_THESA	*-*-	Endo-1,4-beta-xylanase A	IPR001000 (Glycoside hydrolase, family 10), IPR008979 (Galactose-binding domain-like), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf03469g02004.1	sp|Q91WD1|RPC4_MOUSE	*-**	DNA-directed RNA polymerase III subunit RPC4	IPR007811 (DNA-directed RNA polymerase III subunit RPC4)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005666 (DNA-directed RNA polymerase III complex), GO:0006383 (transcription from RNA polymerase III promoter)
Niben101Scf37066g00003.1	AT1G66120.1	*-*-	AMP-dependent synthetase and ligase family protein LENGTH=572	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf17629g00002.1	gb|AES90970.2|	*-*-	Lipid transfer protein [Medicago truncatula]	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf03038g13017.1	sp|Q94A76|GORK_ARATH	--*-	Potassium channel GORK		
Niben101Scf00897g05001.1	sp|P94111|STS1_ARATH	****	Strictosidine synthase 1	IPR004141 (Strictosidine synthase)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf03969g01007.1	ref|NP_001048383.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf04558g02003.1	sp|Q06445|CYTI_VIGUN	****	Cysteine proteinase inhibitor	IPR000010 (Proteinase inhibitor I25, cystatin), IPR027214 (Cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf01535g00007.1	sp|Q0DXZ1|CSLE2_ORYSJ	*-*-	Cellulose synthase-like protein E2		
Niben101Scf03949g01008.1			Unknown protein		
Niben101Scf00981g04002.1	sp|Q9LT81|C3H39_ARATH	***-	Zinc finger CCCH domain-containing protein 39	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf00854g06027.1	sp|Q68S06|PSAA_PANGI	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf02266g01006.1			Unknown protein		
Niben101Scf05932g05002.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf07365g00017.1	sp|Q2T9Q7|TCF23_BOVIN	--*-	Transcription factor 23	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00056g02001.1	ref|XP_007017121.1|	*-*-	Coiled-coil domain-containing protein 109A isoform 2 [Theobroma cacao] gb|EOY34740.1| Coiled-coil domain-containing protein 109A isoform 2 [Theobroma cacao]		
Niben101Scf00460g03008.1	AT3G03680.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1017	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf10857g00007.1	sp|Q9LUQ6|RL192_ARATH	***-	60S ribosomal protein L19-2	IPR000196 (Ribosomal protein L19/L19e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00117g01002.1	AT4G24290.2	***-	MAC/Perforin domain-containing protein LENGTH=606		
Niben101Scf13995g00003.1	sp|Q6D5P8|ZNTB_PECAS	*-**	Zinc transport protein ZntB	IPR002523 (Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf11368g00015.1	gb|KFP22985.1|	*-*-	Retrograde Golgi transport protein RGP1, partial [Egretta garzetta]	IPR014756 (Immunoglobulin E-set), IPR014848 (Reduced growth phenotype protein 1)	
Niben101Scf04003g02004.1			Unknown protein		
Niben101Scf03453g01001.1	sp|Q91VC0|DCTP1_RAT	***-	dCTP pyrophosphatase 1	IPR004518 (NTP pyrophosphohydrolase MazG, putative catalytic core), IPR009039 (EAR), IPR011394 (NTP Pyrophosphohydrolase MazG-related, RS21-C6)	
Niben101Scf00457g09007.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf08137g03002.1	AT5G22110.1	****	DNA polymerase epsilon subunit B2 LENGTH=526	IPR007185 (DNA polymerase alpha/epsilon, subunit B)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication)
Niben101Scf24398g00007.1	sp|Q9FIK1|Y5780_ARATH	*-*-	BTB/POZ domain-containing protein	IPR027356 (NPH3 domain), IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0009958 (positive gravitropism)
Niben101Scf02053g03009.1	AT5G65660.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=136		
Niben101Scf06341g00004.1			Unknown protein		
Niben101Scf15437g02016.1	sp|Q0TMQ7|RL24_CLOP1	***-	50S ribosomal protein L24	IPR003256 (Ribosomal protein L24)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00158g02004.1			Unknown protein		
Niben101Scf04786g00001.1	ref|XP_007031011.1|	*-*-	RING/U-box superfamily protein isoform 2 [Theobroma cacao] gb|EOY11513.1| RING/U-box superfamily protein isoform 2 [Theobroma cacao]		
Niben101Scf06662g02007.1	sp|Q9LNU6|PPR53_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf16806g00003.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR015300 (DNA-binding pseudobarrel domain), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02626g00012.1	ref|XP_007035569.1|	***-	Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 2 [Theobroma cacao] gb|EOY06495.1| Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 2 [Theobroma cacao]		
Niben101Scf05229g00003.1	sp|Q9ZVH3|ORC6_ARATH	****	Origin recognition complex subunit 6	IPR008721 (Origin recognition complex, subunit 6)	GO:0003677 (DNA binding), GO:0005664 (nuclear origin of replication recognition complex), GO:0006260 (DNA replication)
Niben101Scf02637g02014.1	AT4G33490.2	***-	Eukaryotic aspartyl protease family protein LENGTH=425	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01440g04025.1	AT4G31200.2	****	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein LENGTH=650	IPR000061 (SWAP/Surp), IPR006569 (CID domain)	GO:0003723 (RNA binding), GO:0006396 (RNA processing)
Niben101Scf03766g07002.1	sp|B7HHQ8|GPDA_BACC4	****	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	IPR006168 (Glycerol-3-phosphate dehydrogenase, NAD-dependent), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004367 (glycerol-3-phosphate dehydrogenase [NAD+] activity), GO:0005737 (cytoplasm), GO:0005975 (carbohydrate metabolic process), GO:0006072 (glycerol-3-phosphate metabolic process), GO:0009331 (glycerol-3-phosphate dehydrogenase complex), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0042803 (protein homodimerization activity), GO:0046168 (glycerol-3-phosphate catabolic process), GO:0050662 (coenzyme binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg13873g00002.1	sp|Q8W246|ZIP7_ARATH	****	Zinc transporter 7	IPR003689 (Zinc/iron permease)	GO:0005385 (zinc ion transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport), GO:0071577 (zinc ion transmembrane transport)
Niben101Scf01320g01003.1	sp|Q9FFI5|NAC86_ARATH	***-	NAC domain-containing protein 86	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08488g02008.1	AT2G04410.1	***-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=73	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf37900g00008.1			Unknown protein		
Niben101Scf01130g01008.1	AT2G47940.1	***-	DEGP protease 2 LENGTH=607	IPR001478 (PDZ domain)	GO:0005515 (protein binding)
Niben101Scf08609g00001.1	sp|Q8W3L1|MFDR_ARATH	****	NADPH:adrenodoxin oxidoreductase, mitochondrial	IPR016040 (NAD(P)-binding domain), IPR021163 (Adrenodoxin-NADP+ reductase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02011g07004.1	gb|AII99831.1|	--*-	CLB1 [Nicotiana tabacum]		
Niben101Scf01045g00016.1	sp|B3H4F1|SP1L1_ARATH	***-	Protein SPIRAL1-like 1		
Niben101Scf04096g05003.1	sp|Q8C2L6|T161B_MOUSE	*-*-	Transmembrane protein 161B	IPR019395 (Transmembrane protein 161A/B)	
Niben101Scf01290g01007.1	sp|A7NY33|PER4_VITVI	****	Peroxidase 4	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02195g06007.1	sp|O23181|PLP3_ARATH	***-	Patatin-like protein 3	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf00135g03020.1	ref|XP_003629676.1|	--*-	UV radiation resistance-associated gene protein [Medicago truncatula] gb|AET04152.1| UV radiation resistance-associated-like protein [Medicago truncatula]		
Niben101Scf01486g03022.1	sp|Q8GWA9|PP157_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002625 (Smr protein/MutS2 C-terminal), IPR002885 (Pentatricopeptide repeat)	
Niben101Scf14101g01001.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12765g01018.1	sp|Q9CRD2|EMC2_MOUSE	***-	ER membrane protein complex subunit 2	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf18047g00005.1	sp|Q54JS5|WDR24_DICDI	*-*-	WD repeat-containing protein 24 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR022052 (Histone-binding protein RBBP4, N-terminal)	GO:0005515 (protein binding)
Niben101Scf04044g18002.1	sp|Q9LHP4|RCH2_ARATH	*-*-	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf19358g00011.1	sp|O48850|VA725_ARATH	****	Vesicle-associated membrane protein 725	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf01866g01035.1	sp|P41351|TBA_TETTH	*-*-	Tubulin alpha chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Ctg14095g00001.1	sp|Q9M2C0|VITH4_ARATH	***-	Vacuolar iron transporter homolog 4	IPR008217 (Ccc1 family)	
Niben101Scf02306g00004.1	emb|CDX83448.1|	***-	BnaA03g20580D [Brassica napus]		
Niben101Scf00347g00015.1	AT1G03780.3	***-	targeting protein for XKLP2 LENGTH=790	IPR009675 (TPX2), IPR027329 (TPX2, C-terminal domain), IPR027330 (TPX2 central domain)	GO:0005819 (spindle), GO:0005874 (microtubule), GO:0007067 (mitotic nuclear division)
Niben101Scf01066g01009.1	sp|O95208|EPN2_HUMAN	*-*-	Epsin-2	IPR008942 (ENTH/VHS)	
Niben101Scf00613g05015.1	sp|Q5XJ54|GLRX3_DANRE	*-*-	Glutaredoxin 3	IPR004480 (Monothiol glutaredoxin-related), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00367g10018.1	sp|A5BJL8|CYNS_VITVI	****	Cyanate hydratase	IPR008076 (Cyanate hydratase)	GO:0003677 (DNA binding), GO:0008824 (cyanate hydratase activity), GO:0009439 (cyanate metabolic process)
Niben101Scf01423g04007.1	sp|P24555|PTRB_ECOLI	***-	Protease 2	IPR002470 (Peptidase S9A, prolyl oligopeptidase), IPR023302 (Peptidase S9A, N-terminal domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0070008 (serine-type exopeptidase activity)
Niben101Scf08693g00006.1	gb|AET01485.2|	***-	Avr9/Cf-9 rapidly elicited protein [Medicago truncatula]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf01892g02010.1	AT1G78520.1	***-	Carbohydrate-binding X8 domain superfamily protein LENGTH=115	IPR012946 (X8 domain)	
Niben101Scf01549g00008.1	sp|Q9Z269|VAPB_RAT	--**	Vesicle-associated membrane protein-associated protein B	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf04632g00008.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05853g02001.1	AT5G13810.1	***-	Glutaredoxin family protein LENGTH=274	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01842g06011.1	sp|Q9SR72|GL32_ARATH	*-*-	Germin-like protein subfamily 3 member 2	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf00332g04003.1	emb|CDX76648.1|	***-	BnaC08g32340D [Brassica napus]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf05391g03004.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03304g01026.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf03630g00006.1	sp|Q9C7N4|GDL15_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02795g00007.1	sp|Q493J6|RL5_BLOPB	--*-	50S ribosomal protein L5	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04006g01016.1	AT3G52440.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=247	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09141g01010.1	sp|F4KGN5|S40A2_ARATH	***-	Solute carrier family 40 member 2	IPR009716 (Ferroporti-1), IPR020846 (Major facilitator superfamily domain)	GO:0005381 (iron ion transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0034755 (iron ion transmembrane transport)
Niben101Scf10158g01032.1	sp|O23609|PER41_ARATH	*-**	Peroxidase 41	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01991g03004.1	sp|Q79666|POL_HV1MV	--*-	Gag-Pol polyprotein	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf00260g00003.1	sp|Q9SYT0|ANXD1_ARATH	***-	Annexin D1	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf04657g01001.1			Unknown protein		
Niben101Scf03949g07005.1	sp|Q94KD3|VP52A_ARATH	***-	Vacuolar protein sorting-associated protein 52 A	IPR007258 (Vps52), IPR016159 (Cullin repeat-like-containing domain)	
Niben101Scf02548g04008.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03143g12001.1	emb|CDY28341.1|	*-*-	BnaC01g35110D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf12372g01008.1	sp|Q9C5Z2|EIF3H_ARATH	****	Eukaryotic translation initiation factor 3 subunit H	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR027524 (Eukaryotic translation initiation factor 3 subunit H)	GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf01594g05013.1	ref|XP_007048544.1|	****	TGACG-sequence-specific DNA-binding protein TGA-2.1, putative [Theobroma cacao] gb|EOX92701.1| TGACG-sequence-specific DNA-binding protein TGA-2.1, putative [Theobroma cacao]	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01475g00007.1	AT5G05840.1	***-	Protein of unknown function (DUF620) LENGTH=439	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf03510g01006.1	sp|Q9USQ6|SYJ2_SCHPO	*-**	Inositol-1,4,5-trisphosphate 5-phosphatase 2	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf01476g00008.1	sp|Q5SRE7|PHYD1_HUMAN	***-	Phytanoyl-CoA dioxygenase domain-containing protein 1	IPR008775 (Phytanoyl-CoA dioxygenase)	
Niben101Scf10940g01001.1	sp|Q84VW5|MED32_ARATH	*-*-	Mediator of RNA polymerase II transcription subunit 32		
Niben101Scf00308g01003.1	sp|Q9FFI5|NAC86_ARATH	*-*-	NAC domain-containing protein 86	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03263g07010.1	AT4G28706.4	***-	pfkB-like carbohydrate kinase family protein LENGTH=440	IPR029056 (Ribokinase-like)	GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00233g00008.1	sp|A0QCI6|MDH_MYCA1	****	Malate dehydrogenase	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf01001g01002.1	gb|AAQ09994.1|	***-	S2 self-incompatibility locus-linked pollen 3.2 protein [Petunia integrifolia subsp. inflata]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01817g00019.1	sp|P0CS43|LIS1_CRYNB	--*-	Nuclear distribution protein PAC1	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf08630g00009.1			Unknown protein		
Niben101Scf04294g04017.1	AT2G45250.2	*-*-	Integral membrane protein hemolysin-III homolog LENGTH=215		
Niben101Scf00854g02040.1	sp|Q33798|CYB_ASPNG	***-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal), IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf12783g01011.1	AT3G30390.1	***-	Transmembrane amino acid transporter family protein LENGTH=460	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf02525g01005.1	sp|Q9LW68|LSH4_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4	IPR006936 (ALOG domain)	
Niben101Scf25765g00004.1	sp|O80944|AKRC8_ARATH	****	Aldo-keto reductase family 4 member C8	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00654g04018.1	sp|P46800|GBLP_DICDI	*-**	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02705g02021.1	sp|P42124|EZ_DROME	*-**	Histone-lysine N-methyltransferase E(z)	IPR001214 (SET domain), IPR003105 (SRA-YDG), IPR007728 (Pre-SET domain), IPR015947 (PUA-like domain), IPR025794 (Histone H3-K9 methyltransferase, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016571 (histone methylation), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0042393 (histone binding)
Niben101Scf00109g04007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09592g00003.1			Unknown protein		
Niben101Scf01278g00007.1	AT4G21380.1	*-**	receptor kinase 3 LENGTH=850	IPR011009 (Protein kinase-like domain), IPR021820 (S-locus receptor kinase, C-terminal)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05087g07007.1	sp|Q1PDH6|LAC16_ARATH	***-	Laccase-16	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06400g00004.1	sp|F4K5L5|TBL16_ARATH	***-	Protein trichome birefringence-like 16	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf04030g01008.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf06277g04015.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04675g03004.1			Unknown protein		
Niben101Scf01848g02014.1	sp|P54119|CDK1_AJECA	****	Cyclin-dependent kinase 1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04724g01002.1	sp|Q35542|NU4M_PETMA	--*-	NADH-ubiquinone oxidoreductase chain 4		
Niben101Ctg10524g00002.1			Unknown protein		
Niben101Scf03154g01010.1	AT4G33510.1	*-**	3-deoxy-d-arabino-heptulosonate 7-phosphate synthase LENGTH=507	IPR002480 (DAHP synthetase, class II)	GO:0003849 (3-deoxy-7-phosphoheptulonate synthase activity), GO:0009073 (aromatic amino acid family biosynthetic process)
Niben101Scf07829g03017.1	ref|XP_002517598.1|	****	racemase and epimerase, acting on amino acids and derivatives, putative [Ricinus communis] gb|EEF44762.1| racemase and epimerase, acting on amino acids and derivatives, putative [Ricinus communis]	IPR015942 (Asp/Glu/hydantoin racemase)	GO:0006520 (cellular amino acid metabolic process), GO:0006807 (nitrogen compound metabolic process), GO:0008152 (metabolic process), GO:0016855 (racemase and epimerase activity, acting on amino acids and derivatives), GO:0036361 (racemase activity, acting on amino acids and derivatives)
Niben101Scf01919g01008.1	gb|ESZ90353.1|	*-*-	LysM domain-containing protein [Sclerotinia borealis F-4157]	IPR018392 (LysM domain)	
Niben101Scf02803g01009.1	sp|Q93YU5|SEC8_ARATH	***-	Exocyst complex component SEC8		
Niben101Scf05118g05011.1	sp|A2WWV5|ERG1_ORYSI	*-*-	Elicitor-responsive protein 1		
Niben101Scf04350g05008.1	AT1G61080.1	*-*-	Hydroxyproline-rich glycoprotein family protein LENGTH=907		
Niben101Scf01956g03008.1	tpg|DAA62892.1|	--*-	TPA: FAR1-domain family sequence [Zea mays]		
Niben101Scf01748g02003.1	sp|Q9C652|RBP1_ARATH	--**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02160g06053.1	sp|Q37649|COX2_ROULE	*-**	Cytochrome c oxidase subunit 2	IPR008972 (Cupredoxin)	GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0016020 (membrane)
Niben101Scf01548g00024.1	sp|Q65H55|DNAJ_BACLD	--*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf10438g00009.1	sp|Q40477|ERF4_TOBAC	--**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07973g00002.1	sp|Q08AV6|TBCC1_XENLA	***-	TBCC domain-containing protein 1	IPR017901 (C-CAP/cofactor C-like domain)	GO:0000902 (cell morphogenesis), GO:0003779 (actin binding), GO:0007010 (cytoskeleton organization)
Niben101Scf07181g00002.1			Unknown protein	IPR028144 (Cysteine-rich transmembrane CYSTM domain)	
Niben101Scf13103g01048.1	AT5G66310.1	*-**	ATP binding microtubule motor family protein LENGTH=1063	IPR001752 (Kinesin motor domain), IPR021881 (Protein of unknown function DUF3490), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf28512g00001.1	gb|KEH39046.1|	***-	wound-responsive family protein [Medicago truncatula]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf01798g04008.1	AT2G18850.1	*-*-	SET domain-containing protein LENGTH=543	IPR015353 (Rubisco LSMT, substrate-binding domain)	
Niben101Scf00440g04010.1	sp|Q39263|ZFP4_ARATH	***-	Zinc finger protein 4	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf11008g02002.1			Unknown protein		
Niben101Scf16015g01002.1			Unknown protein		
Niben101Scf01660g02007.1	sp|A5FYN7|RS18_ACICJ	*-*-	30S ribosomal protein S18	IPR001648 (Ribosomal protein S18)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07188g00014.1	AT3G26560.1	*-*-	ATP-dependent RNA helicase, putative LENGTH=1168	IPR011709 (Domain of unknown function DUF1605), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01005g02014.1	sp|Q9LSW7|ACCH9_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 9	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01291g01011.1	sp|Q4L385|IMDH_STAHJ	*-*-	Inosine-5'-monophosphate dehydrogenase	IPR000644 (CBS domain)	
Niben101Scf00539g07016.1	sp|Q84W80|FBL42_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain), IPR013101 (Leucine-rich repeat 2)	GO:0005515 (protein binding)
Niben101Scf03964g02010.1	sp|Q9Y535|RPC8_HUMAN	****	DNA-directed RNA polymerase III subunit RPC8	IPR005576 (RNA polymerase Rpb7, N-terminal), IPR012340 (Nucleic acid-binding, OB-fold), IPR013238 (RNA polymerase III, subunit Rpc25)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf13522g02001.1	emb|CDX88033.1|	--*-	BnaA06g26240D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00415g03003.1	sp|D8QNI1|CSPLH_SELML	*-*-	CASP-like protein 5A1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf01606g02002.1			Unknown protein		
Niben101Scf01977g02008.1	sp|Q84MC7|PYL9_ARATH	***-	Abscisic acid receptor PYL9	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf00096g01006.1	gb|KEH26596.1|	***-	animal RPA1 domain protein [Medicago truncatula]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf14262g00001.1	sp|Q94A79|DMS3_ARATH	***-	Protein DEFECTIVE IN MERISTEM SILENCING 3		
Niben101Scf07066g02011.1	sp|P0C8Y9|PSA4B_ORYSI	****	Proteasome subunit alpha type-4-2	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf35120g00001.1			Unknown protein		
Niben101Scf00279g06013.1			Unknown protein		
Niben101Scf00929g02007.1	sp|Q84K00|NAC78_ARATH	*-*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01687g06001.1			Unknown protein		
Niben101Scf00069g07004.1	AT5G65660.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=136		
Niben101Scf10015g01010.1	sp|P59259|H4_ARATH	*-*-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly), GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity)
Niben101Scf00744g04002.1	sp|Q9SP35|TI172_ARATH	*-**	Mitochondrial import inner membrane translocase subunit TIM17-2	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	GO:0005744 (mitochondrial inner membrane presequence translocase complex), GO:0006886 (intracellular protein transport), GO:0015450 (P-P-bond-hydrolysis-driven protein transmembrane transporter activity)
Niben101Scf01353g01011.1	sp|P0C884|SCL34_ARATH	***-	Scarecrow-like protein 34	IPR005202 (Transcription factor GRAS)	
Niben101Scf01576g03012.1	sp|Q9FYQ8|TMN11_ARATH	***-	Transmembrane 9 superfamily member 11	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf02972g01004.1	sp|B2SE60|YIDC_FRATM	*-**	Membrane protein insertase YidC	IPR001708 (Membrane insertase OXA1/ALB3/YidC), IPR028055 (Membrane insertase YidC/Oxa1, C-terminal)	GO:0016021 (integral component of membrane), GO:0051205 (protein insertion into membrane)
Niben101Scf04294g00013.1			Unknown protein		
Niben101Scf04636g02006.1	emb|CDX87797.1|	***-	BnaC02g31520D [Brassica napus]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf03929g05003.1	AT4G01070.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00494g08009.1	AT5G37478.1	***-	TPX2 (targeting protein for Xklp2) protein family LENGTH=178	IPR009675 (TPX2), IPR027329 (TPX2, C-terminal domain)	GO:0005819 (spindle), GO:0005874 (microtubule), GO:0007067 (mitotic nuclear division)
Niben101Scf02248g01004.1	sp|Q9FJB5|RP8L3_ARATH	--*-	Disease resistance RPP8-like protein 3		
Niben101Scf05290g02006.1	AT5G19330.1	***-	ARM repeat protein interacting with ABF2 LENGTH=710	IPR011333 (BTB/POZ fold), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02367g05025.1	AT2G07749.1	*-*-	Mitovirus RNA-dependent RNA polymerase LENGTH=246	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf10252g00003.1	AT1G56500.1	****	haloacid dehalogenase-like hydrolase family protein LENGTH=1055	IPR006439 (HAD hydrolase, subfamily IA), IPR011042 (Six-bladed beta-propeller, TolB-like), IPR012336 (Thioredoxin-like fold), IPR023214 (HAD-like domain)	GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf09044g01005.1	sp|Q25AG5|ERG3_ORYSI	***-	Elicitor-responsive protein 3	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00090g10001.1	sp|Q811I0|ATPF1_MOUSE	--**	ATP synthase mitochondrial F1 complex assembly factor 1	IPR010591 (ATP11)	GO:0005739 (mitochondrion), GO:0006461 (protein complex assembly)
Niben101Scf19059g00010.1	sp|Q3T0Q8|UT14A_BOVIN	*-**	U3 small nucleolar RNA-associated protein 14 homolog A	IPR006709 (Small-subunit processome, Utp14)	GO:0006364 (rRNA processing), GO:0032040 (small-subunit processome)
Niben101Scf07428g02026.1	sp|Q9FJK7|CCC12_ARATH	****	Cyclin-C1-2	IPR015429 (Cyclin C/H/T/L)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0016591 (DNA-directed RNA polymerase II, holoenzyme), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf02653g03003.1	sp|Q66KG5|GMPAB_XENLA	***-	Mannose-1-phosphate guanyltransferase alpha-B	IPR001451 (Bacterial transferase hexapeptide repeat), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf00653g01010.1	sp|Q06881|BCCP_NOSS1	*-**	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	IPR000089 (Biotin/lipoyl attachment), IPR001249 (Acetyl-CoA biotin carboxyl carrier)	GO:0003989 (acetyl-CoA carboxylase activity), GO:0006633 (fatty acid biosynthetic process), GO:0009317 (acetyl-CoA carboxylase complex)
Niben101Scf07788g02004.1	AT5G17700.1	***-	MATE efflux family protein LENGTH=497	IPR002528 (Multi antimicrobial extrusion protein), IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated), GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf05932g00004.1	sp|Q9SAJ5|PP133_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06524g02021.1	gb|KEH22825.1|	*-*-	general transcription factor 3C-like protein [Medicago truncatula]		
Niben101Scf04992g02006.1	AT2G20590.1	*-*-	Reticulon family protein LENGTH=431	IPR003388 (Reticulon)	
Niben101Scf02253g12005.1	sp|P27980|POL_SIVVG	--*-	Gag-Pol polyprotein	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf17490g00023.1	AT5G48660.1	****	B-cell receptor-associated protein 31-like LENGTH=219	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf30681g00003.1	ref|XP_002531850.1|	****	calcium ion binding protein, putative [Ricinus communis] gb|EEF30528.1| calcium ion binding protein, putative [Ricinus communis]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02830g02016.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf00783g06007.1	sp|Q9STQ6|SOT3_ARATH	****	Cytosolic sulfotransferase 3	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf02297g07004.1	sp|Q7Y223|MAN2_ARATH	***-	Mannan endo-1,4-beta-mannosidase 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05041g05002.1	AT4G15050.1	***-	Protein of Unknown Function (DUF239) LENGTH=396	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf01574g06003.1	sp|Q6NXE6|ARMC6_HUMAN	***-	Armadillo repeat-containing protein 6	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04170g01006.1	sp|Q53FV1|ORML2_HUMAN	***-	ORM1-like protein 2	IPR007203 (ORMDL family)	GO:0005789 (endoplasmic reticulum membrane), GO:0016021 (integral component of membrane)
Niben101Scf01169g04007.1	sp|Q1RKE6|NUOL_RICBR	*-**	NADH-quinone oxidoreductase subunit L	IPR018393 (NADH-plastoquinone oxidoreductase, chain 5 subgroup)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf06668g08002.1	sp|Q9NS86|LANC2_HUMAN	--*-	LanC-like protein 2	IPR007822 (Lanthionine synthetase C-like)	
Niben101Scf05080g01017.1	sp|Q6IP91|PP4C_XENLA	*-*-	Serine/threonine-protein phosphatase 4 catalytic subunit	IPR029052 (Metallo-dependent phosphatase-like)	
Niben101Scf06267g00007.1	sp|A4W5V5|MSRA_ENT38	****	Peptide methionine sulfoxide reductase MsrA	IPR002569 (Peptide methionine sulphoxide reductase MsrA), IPR028427 (Peptide methionine sulfoxide reductase)	GO:0006979 (response to oxidative stress), GO:0008113 (peptide-methionine (S)-S-oxide reductase activity), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0030091 (protein repair), GO:0055114 (oxidation-reduction process)
Niben101Scf00286g01012.1	sp|Q56X05|PPR15_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02253g03005.1	AT5G62540.1	***-	ubiquitin-conjugating enzyme 3 LENGTH=150	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf09640g00011.1	sp|Q9SSQ4|FRS6_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 6	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf09021g00003.1	ref|WP_027227062.1|	***-	membrane protein [Legionella pneumophila]	IPR008217 (Ccc1 family)	
Niben101Scf06590g01006.1	AT3G45630.1	*-*-	RNA binding (RRM/RBD/RNP motifs) family protein LENGTH=989		
Niben101Scf07087g00012.1	AT3G17220.1	****	pectin methylesterase inhibitor 2 LENGTH=173	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf04608g01001.1	gb|KEH44280.1|	--*-	pentatricopeptide (PPR) repeat protein [Medicago truncatula]		
Niben101Scf28620g00005.1	ref|XP_007033350.1|	*-*-	Decapping 5, putative isoform 4 [Theobroma cacao] gb|EOY04276.1| Decapping 5, putative isoform 4 [Theobroma cacao]	IPR010920 (Like-Sm (LSM) domain), IPR019050 (FDF domain), IPR025761 (FFD box), IPR025762 (DFDF domain), IPR025768 (TFG box)	
Niben101Scf02853g06025.1			Unknown protein		
Niben101Scf08567g00014.1			Unknown protein		
Niben101Scf13371g00003.1	AT3G07310.1	***-	Protein of unknown function (DUF760) LENGTH=368	IPR008479 (Protein of unknown function DUF760)	
Niben101Scf04286g01006.1	sp|Q8NCM2|KCNH5_HUMAN	*-*-	Potassium voltage-gated channel subfamily H member 5	IPR014710 (RmlC-like jelly roll fold), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf00690g00014.1	sp|Q8LBZ4|OTU_ARATH	***-	OTU domain-containing protein	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf09436g00009.1	AT3G47833.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=93		
Niben101Scf02232g01002.1	AT2G34510.1	***-	Protein of unknown function, DUF642 LENGTH=401	IPR006946 (Protein of unknown function DUF642), IPR008979 (Galactose-binding domain-like)	
Niben101Scf01143g06017.1	sp|Q9LFW3|COBL4_ARATH	***-	COBRA-like protein 4	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf00188g00008.1	AT2G40095.1	*-*-	Alpha/beta hydrolase related protein LENGTH=209	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03147g10016.1	sp|Q9ZW24|GSTU7_ARATH	***-	Glutathione S-transferase U7	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold), IPR019609 (Variant surface glycoprotein, trypanosome, C-terminal)	GO:0005515 (protein binding)
Niben101Scf11424g02001.1	sp|Q9T076|ENL2_ARATH	*-*-	Early nodulin-like protein 2	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf00050g03004.1	sp|A7ZK06|YCAR_ECO24	-**-	UPF0434 protein YcaR	IPR005651 (Uncharacterised protein family UPF0434/Trm112)	
Niben101Scf02513g01019.1	sp|Q4L970|COPA_STAHJ	*-*-	Copper-exporting P-type ATPase A	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf06809g00033.1	gb|KEH21484.1|	***-	heparan-alpha-glucosaminide N-acetyltransferase-like protein [Medicago truncatula]	IPR012429 (Protein of unknown function DUF1624)	
Niben101Scf01052g06002.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01482g02010.1	ref|XP_002516322.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46069.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03460g07020.1	gb|KEH38454.1|	*-*-	disease resistance protein (CC-NBS-LRR class) family protein [Medicago truncatula]	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00388g05001.1	AT5G06940.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=872	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf08097g00004.1	emb|CDY34631.1|	*-*-	BnaC08g41900D [Brassica napus]		
Niben101Scf02502g12001.1	sp|Q3EBL9|VP372_ARATH	***-	Vacuolar protein-sorting-associated protein 37 homolog 2	IPR009851 (Modifier of rudimentary, Modr)	
Niben101Scf04406g04006.1	sp|P93003|TFL1_ARATH	***-	Protein TERMINAL FLOWER 1	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf06902g00007.1	sp|Q9XHE4|RL37A_GOSHI	***-	60S ribosomal protein L37a	IPR002674 (Ribosomal protein L37ae), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03370g04009.1	AT5G07050.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=402	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf08535g02004.1	sp|Q8L8A6|GRF5_ARATH	*-*-	Growth-regulating factor 5	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf10866g01001.1	sp|P56069|METB_HELPY	***-	Cystathionine gamma-synthase	IPR000277 (Cys/Met metabolism, pyridoxal phosphate-dependent enzyme), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03036g07011.1	AT5G55290.1	*-*-	ATPase, V0 complex, subunit E LENGTH=70		
Niben101Scf00326g01021.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf02118g00019.1	AT3G19080.1	*-*-	SWIB complex BAF60b domain-containing protein LENGTH=462	IPR003121 (SWIB/MDM2 domain)	GO:0005515 (protein binding)
Niben101Scf05140g01007.1	sp|Q9LW49|ERF4_NICSY	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01721g10010.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf00290g01016.1	sp|A7HBU9|LIPA_ANADF	****	Lipoyl synthase	IPR003698 (Lipoyl synthase), IPR007197 (Radical SAM)	GO:0003824 (catalytic activity), GO:0009107 (lipoate biosynthetic process), GO:0009507 (chloroplast), GO:0016992 (lipoate synthase activity), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf01338g05012.1	ref|XP_007033348.1|	***-	Decapping 5, putative isoform 2 [Theobroma cacao] gb|EOY04274.1| Decapping 5, putative isoform 2 [Theobroma cacao]	IPR010920 (Like-Sm (LSM) domain), IPR019050 (FDF domain), IPR025761 (FFD box), IPR025762 (DFDF domain), IPR025768 (TFG box)	
Niben101Scf02892g01023.1	sp|Q9WTL2|RAB25_MOUSE	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf10763g00008.1	AT4G27450.1	***-	Aluminium induced protein with YGL and LRDR motifs LENGTH=250	IPR024286 (Domain of unknown function DUF3700), IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf14179g02010.1	sp|Q9FLN0|GLIP1_ARATH	*-*-	GDSL esterase/lipase 1	IPR003480 (Transferase), IPR013830 (SGNH hydrolase-type esterase domain), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0006629 (lipid metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01512g06008.1	sp|Q2P0V6|NUOB_XANOM	*-*-	NADH-quinone oxidoreductase subunit B	IPR006137 (NADH:ubiquinone oxidoreductase-like, 20kDa subunit)	GO:0051536 (iron-sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg11423g00004.1			Unknown protein		
Niben101Scf02828g00004.1	sp|A9M837|ATPB_BRUC2	****	ATP synthase subunit beta	IPR005722 (ATPase, F1 complex, beta subunit), IPR020971 (ATP synthase, F1 beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000275 (mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)), GO:0005524 (ATP binding), GO:0006200 (ATP catabolic process), GO:0006754 (ATP biosynthetic process), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0015992 (proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0016887 (ATPase activity), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0046034 (ATP metabolic process), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Ctg14771g00002.1	AT1G79900.1	***-	Mitochondrial substrate carrier family protein LENGTH=296	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf05412g02002.1	sp|P05618|CDGT_BACS0	*-*-	Cyclomaltodextrin glucanotransferase	IPR013783 (Immunoglobulin-like fold), IPR013784 (Carbohydrate-binding-like fold), IPR015902 (Glycoside hydrolase, family 13)	GO:0003824 (catalytic activity), GO:0030246 (carbohydrate binding), GO:2001070 (starch binding)
Niben101Scf02822g05005.1			Unknown protein		
Niben101Scf12674g00009.1	sp|Q61171|PRDX2_MOUSE	****	Peroxiredoxin-2	IPR012336 (Thioredoxin-like fold)	GO:0016209 (antioxidant activity), GO:0016491 (oxidoreductase activity), GO:0051920 (peroxiredoxin activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09816g01004.1	gb|ABX46123.1|	***-	blight-associated protein P12, partial [Citrus medica]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf09133g03027.1	sp|Q9FDZ9|RL212_ARATH	***-	60S ribosomal protein L21-2	IPR001147 (Ribosomal protein L21e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05238g01016.1	sp|Q9Y5M8|SRPRB_HUMAN	*-*-	Signal recognition particle receptor subunit beta	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR019009 (Signal recognition particle receptor, beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf01673g01007.1	sp|Q3M8C8|SYK_ANAVT	****	Lysine--tRNA ligase	IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004824 (lysine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006430 (lysyl-tRNA aminoacylation)
Niben101Scf10158g01037.1	sp|Q5QM99|RL37A_ORYSJ	***-	60S ribosomal protein L37a	IPR002674 (Ribosomal protein L37ae), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00854g04010.1			Unknown protein		
Niben101Scf09315g01001.1	sp|Q9UFF9|CNOT8_HUMAN	***-	CCR4-NOT transcription complex subunit 8	IPR006941 (Ribonuclease CAF1), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Ctg11126g00001.1	ref|XP_007047114.1|	--*-	AP2/B3-like transcriptional factor family protein, putative [Theobroma cacao] gb|EOX91271.1| AP2/B3-like transcriptional factor family protein, putative [Theobroma cacao]		
Niben101Scf13857g00006.1	sp|Q9SYZ9|TAF8_ARATH	*-*-	Transcription initiation factor TFIID subunit 8	IPR006565 (Bromodomain transcription factor)	
Niben101Scf02581g03014.1	AT5G07380.3	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: egg cell; Has 84 Blast hits to 81 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=642		
Niben101Scf03028g03023.1	gb|ADG85345.1|	****	NADH dehydrogenase subunit 6 [Silene paradoxa]	IPR001457 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 6)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02441g04001.1	sp|Q940V3|U91A1_ARATH	--*-	UDP-glycosyltransferase 91A1		
Niben101Scf00635g03003.1	AT1G13890.1	***-	soluble N-ethylmaleimide-sensitive factor adaptor protein 30 LENGTH=263	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf04557g03009.1	sp|Q9H9Y2|RPF1_HUMAN	***-	Ribosome production factor 1	IPR004154 (Anticodon-binding), IPR007109 (Brix domain)	
Niben101Scf13167g01012.1	sp|Q28ID3|GLRX3_XENTR	*-*-	Glutaredoxin-3	IPR004480 (Monothiol glutaredoxin-related), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf16332g01001.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04667g00002.1			Unknown protein		
Niben101Scf23499g00001.1	sp|O48723|PLP2_ARATH	*-*-	Patatin-like protein 2	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0008152 (metabolic process)
Niben101Scf01980g12016.1	AT1G22460.1	***-	O-fucosyltransferase family protein LENGTH=565	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf02160g06011.1			Unknown protein		
Niben101Scf05847g00010.1	sp|Q0WVV0|PPR31_ARATH	*-*-	Pentatricopeptide repeat-containing protein At1g10910, chloroplastic		
Niben101Scf07027g03005.1	sp|Q54S59|WDR61_DICDI	--*-	WD repeat-containing protein 61 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Ctg14904g00006.1	sp|Q3EDF8|PPR28_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf04398g06017.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf03321g01003.1	sp|Q9LEX0|P2A13_ARATH	***-	F-box protein PP2-A13	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf01401g01011.1	sp|Q9SHI7|UBC34_ARATH	--*-	Ubiquitin-conjugating enzyme E2 34		
Niben101Scf18107g00013.1	sp|Q9C968|CCA24_ARATH	****	Cyclin-A2-4	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf00744g03005.1	AT4G24480.1	****	Protein kinase superfamily protein LENGTH=956	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01818g02005.1	sp|Q6NLB0|GSTL1_ARATH	*-*-	Glutathione S-transferase L1	IPR010987 (Glutathione S-transferase, C-terminal-like)	
Niben101Scf01664g03006.1	AT5G66110.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=147	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf19155g00003.1			Unknown protein		
Niben101Ctg00837g00001.1	ref|NP_001234828.1|	*-*-	extensin-like protein Ext1 precursor [Solanum lycopersicum] emb|CAD10626.1| extensin-like protein Ext1 [Solanum lycopersicum]		
Niben101Scf01435g03006.1	AT1G64700.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=203	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf09197g00005.1	AT3G30340.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=364	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01854g00029.1	sp|Q4P7F2|FES1_USTMA	***-	Hsp70 nucleotide exchange factor FES1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf07729g02007.1	sp|Q9FNA9|PDAT1_ARATH	****	Phospholipid:diacylglycerol acyltransferase 1	IPR003386 (Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0008374 (O-acyltransferase activity)
Niben101Scf03500g02004.1	AT2G39910.1	*-*-	ARM repeat superfamily protein LENGTH=436	IPR011989 (Armadillo-like helical)	
Niben101Scf04384g00010.1	emb|CDY03785.1|	*-*-	BnaC01g29020D [Brassica napus]		
Niben101Scf12290g01008.1	AT4G01070.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf08936g02001.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf01191g02012.1	sp|Q7ZUQ3|STK3_DANRE	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03893g02007.1	sp|Q9SSK5|MLP43_ARATH	***-	MLP-like protein 43	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf09550g01006.1	AT1G11720.2	*-*-	starch synthase 3 LENGTH=1094		
Niben101Scf00492g02012.1	tpg|DAA55898.1|	***-	TPA: hypothetical protein ZEAMMB73_963597 [Zea mays]	IPR029164 (Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y)	
Niben101Scf06390g00008.1	sp|P0A3D0|FER_SYNEL	***-	Ferredoxin-1	IPR010241 (Ferredoxin [2Fe-2S], plant), IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0022900 (electron transport chain), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf10505g00003.1	sp|P59277|SYP81_ARATH	*-*-	Syntaxin-81	IPR010989 (t-SNARE)	GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf08562g00006.1	sp|Q9ZQW8|U2AFA_ORYSJ	*-*-	Splicing factor U2af small subunit A	IPR009145 (U2 auxiliary factor small subunit), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0046872 (metal ion binding)
Niben101Scf00648g00002.1	sp|Q9LNT9|ASK4_ARATH	***-	SKP1-like protein 4	IPR001232 (S-phase kinase-associated protein 1-like), IPR011333 (BTB/POZ fold), IPR016072 (SKP1 component, dimerisation)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf02253g07007.1			Unknown protein		
Niben101Scf00574g09010.1	sp|Q9XZE5|PP2AA_DICDI	***-	Serine/threonine-protein phosphatase 2A catalytic subunit A	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf00272g00001.1	sp|Q9ZUU0|WRK44_ARATH	*-**	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01240g05002.1	AT5G20110.1	*-*-	Dynein light chain type 1 family protein LENGTH=209	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Scf02636g07005.1			Unknown protein		
Niben101Scf01146g13015.1	sp|Q9SBL3|CHS6_SORBI	***-	Chalcone synthase 6	IPR011141 (Polyketide synthase, type III), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0009058 (biosynthetic process), GO:0016746 (transferase activity, transferring acyl groups), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02362g03003.1	sp|Q9LV01|ETOL2_ARATH	***-	ETO1-like protein 2	IPR011333 (BTB/POZ fold), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08488g03006.1	gb|AGS78073.1|	*-*-	legume-specific protein [Aeschynomene indica]		
Niben101Scf12711g00005.1	ref|XP_007028717.1|	*-*-	ARM repeat superfamily protein, putative isoform 3 [Theobroma cacao] gb|EOY09219.1| ARM repeat superfamily protein, putative isoform 3 [Theobroma cacao]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04314g02015.1	gb|AFC90220.1|	*-**	nucleotide-binding site leucine-rich repeat protein, partial [Rhododendron formosanum]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf03459g01001.1	gb|KEH21484.1|	***-	heparan-alpha-glucosaminide N-acetyltransferase-like protein [Medicago truncatula]		
Niben101Scf01500g01016.1			Unknown protein		
Niben101Scf09885g01021.1	ref|NP_565550.1|	*-**	protein RER1C1 [Arabidopsis thaliana] RecName: Full=Protein RER1C; Short=AtRER1C [Arabidopsis thaliana] dbj|BAA33862.1| AtRER1C [Arabidopsis thaliana] gb|AAL47450.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAB87102.2| putative integral membrane protein [Arabidopsis thaliana] gb|AAM19906.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAM63458.1| putative integral membrane protein [Arabidopsis thaliana] gb|AEC07439.1| protein RER1C1 [Arabidopsis thaliana]	IPR004932 (Retrieval of early ER protein Rer1)	GO:0016021 (integral component of membrane)
Niben101Scf02525g03002.1	AT5G43310.1	***-	COP1-interacting protein-related LENGTH=1237		
Niben101Scf16145g00001.1			Unknown protein		
Niben101Scf01423g02003.1	sp|P52839|SOT12_ARATH	*-**	Cytosolic sulfotransferase 12	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf01417g06005.1	AT2G38500.1	*-*-	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=356	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf10636g00012.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00883g05009.1	AT4G24170.1	*-**	ATP binding microtubule motor family protein LENGTH=1004	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf03453g00003.1	ref|WP_019475137.1|	*-**	membrane protein [Prochlorococcus sp. W2]	IPR003425 (Uncharacterised protein family Ycf19)	GO:0016020 (membrane)
Niben101Scf03732g06005.1	sp|Q96CS2|HAUS1_HUMAN	***-	HAUS augmin-like complex subunit 1		
Niben101Scf02115g01004.1	AT5G24970.2	***-	Protein kinase superfamily protein LENGTH=761	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02622g09006.1	gb|AIU50885.1|	***-	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein, partial [Zea mays]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf19230g01018.1	sp|Q96GM5|SMRD1_HUMAN	***-	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	IPR003121 (SWIB/MDM2 domain), IPR010335 (Mesothelin)	GO:0005515 (protein binding)
Niben101Scf11247g00003.1	sp|Q84QY3|PLP1_ORYSJ	***-	Patatin-like protein 1	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0008152 (metabolic process)
Niben101Scf04473g07001.1	sp|B1J692|CLPP_PSEPW	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03106g01008.1	sp|P92998|GL11_ARATH	***-	Germin-like protein subfamily 1 member 1	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf06279g01018.1	sp|Q8RY18|Y5436_ARATH	*-*-	MATH domain-containing protein		
Niben101Scf00780g00002.1	sp|P29059|CHI3_TOBAC	*-*-	Endochitinase 3	IPR000726 (Glycoside hydrolase, family 19, catalytic), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0006032 (chitin catabolic process), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf01688g00006.1	sp|Q9SX45|PPR75_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01696g01003.1	ref|WP_033484244.1|	--*-	NAD/FAD-dependent oxidoreductase [Xanthomonas campestris]		
Niben101Scf00530g05011.1	sp|Q3JMH0|FTSH_BURP1	****	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR005936 (Peptidase, FtsH), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf05848g04010.1	AT3G02800.1	****	Tyrosine phosphatase family protein LENGTH=203	IPR004861 (Protein-tyrosine phosphatase, SIW14-like), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity)
Niben101Scf10396g00002.1	ref|NP_001047044.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf29047g00009.1	sp|D2TT52|YMDB_CITRI	*-*-	O-acetyl-ADP-ribose deacetylase	IPR001251 (CRAL-TRIO domain), IPR002589 (Macro domain)	
Niben101Scf07401g00008.1	sp|Q6AXT7|RBM42_RAT	*-**	RNA-binding protein 42	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02072g03009.1	AT3G10250.1	***-	Plant protein 1589 of unknown function LENGTH=324	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf00963g05008.1			Unknown protein		
Niben101Scf00389g01006.1	AT4G15020.1	***-	hAT transposon superfamily LENGTH=768	IPR003656 (Zinc finger, BED-type), IPR007021 (Domain of unknown function DUF659), IPR008906 (HAT dimerisation domain, C-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf02992g03015.1	sp|O95696|BRD1_HUMAN	*-*-	Bromodomain-containing protein 1	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf06991g00004.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf01182g07010.1	sp|P81370|TLP_ACTDE	*-*-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf05488g00011.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06078g02031.1	gb|AAF14244.1|AF110228_1	*-*-	nuclear RNA binding protein A [Spinacia oleracea]		
Niben101Scf01071g03021.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13346g00003.1	sp|Q8CIM8|INT4_MOUSE	*-*-	Integrator complex subunit 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf07103g03015.1	AT5G05690.1	***-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01395g02005.1	AT1G30760.1	****	FAD-binding Berberine family protein LENGTH=534	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09696g01120.1			Unknown protein		
Niben101Scf05733g00005.1	sp|Q84K34|SIL10_ARATH	****	E3 ubiquitin-protein ligase SINA-like 10	IPR004162 (E3 ubiquitin-protein ligase SINA like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf07899g00002.1	sp|Q9SXD8|PPR90_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf19623g00011.1	sp|P29059|CHI3_TOBAC	*-*-	Endochitinase 3	IPR000726 (Glycoside hydrolase, family 19, catalytic), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0006032 (chitin catabolic process), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf03766g07005.1	AT3G01710.1	*-*-	TPX2 (targeting protein for Xklp2) protein family LENGTH=391	IPR027329 (TPX2, C-terminal domain)	
Niben101Scf02636g09007.1	sp|Q84W80|FBL42_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf03461g05026.1	sp|Q9JLA3|UGGG1_RAT	--*-	UDP-glucose:glycoprotein glucosyltransferase 1		
Niben101Scf06163g01018.1	AT5G61865.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=417		
Niben101Scf03879g00003.1			Unknown protein		
Niben101Ctg16048g00003.1			Unknown protein		
Niben101Scf03414g02002.1	AT2G29650.1	***-	phosphate transporter 4;1 LENGTH=512	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00592g00026.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf06991g00003.1	sp|A7HKM4|PTH_FERNB	--*-	Peptidyl-tRNA hydrolase		
Niben101Scf02792g02008.1			Unknown protein		
Niben101Ctg14734g00004.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf10085g01009.1	sp|Q9UPR6|ZFR2_HUMAN	--**	Zinc finger RNA-binding protein 2	IPR003604 (Zinc finger, U1-type), IPR004345 (TB2/DP1/HVA22-related protein)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf04044g12003.1	AT1G65950.1	***-	Protein kinase superfamily protein LENGTH=551	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00246g05002.1	ref|XP_007040750.1|	--*-	Zinc ion binding,nucleic acid binding-like protein [Theobroma cacao] gb|EOY25251.1| Zinc ion binding,nucleic acid binding-like protein [Theobroma cacao]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf01534g03001.1	AT3G04820.1	****	Pseudouridine synthase family protein LENGTH=715	IPR001656 (Pseudouridine synthase, TruD), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf08391g01015.1	AT3G06483.1	***-	pyruvate dehydrogenase kinase LENGTH=366	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR018955 (Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase, N-terminal)	
Niben101Scf00985g06013.1	ref|NP_001053205.1|	--*-	[Oryza sativa] dbj|BAF15119.1| [Oryza sativa Japonica Group]	IPR009515 (Protein of unknown function DUF1138)	
Niben101Scf00110g04016.1	gb|AES61538.2|	*-*-	metal ion-binding protein [Medicago truncatula]	IPR029021 (Protein-tyrosine phosphatase-like)	
Niben101Scf08208g02011.1	AT4G20840.1	*-**	FAD-binding Berberine family protein LENGTH=539	IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08168g02007.1	sp|Q31RR1|TATA_SYNE7	--*-	Sec-independent protein translocase protein TatA	IPR003369 (Sec-independent protein translocase protein TatA/B/E)	GO:0008565 (protein transporter activity), GO:0015031 (protein transport)
Niben101Scf16150g00002.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR002902 (Gnk2-homologous domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12841g01003.1	sp|Q9SYL6|GGH1_ARATH	****	Gamma-glutamyl hydrolase 1	IPR011697 (Peptidase C26), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003824 (catalytic activity), GO:0006541 (glutamine metabolic process), GO:0008242 (omega peptidase activity), GO:0016787 (hydrolase activity)
Niben101Scf08618g01005.1	gb|AEB31335.1|	--*-	elongation factor 1-alpha, partial [Epinephelus bruneus]		
Niben101Scf02227g06002.1			Unknown protein		
Niben101Scf02077g12014.1	sp|Q9SS98|OLEO5_ARATH	***-	Oleosin 5	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf03422g04011.1	ref|XP_002509798.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF51185.1| conserved hypothetical protein [Ricinus communis]	IPR007175 (RNAse P, Rpr2/Rpp21 subunit)	
Niben101Scf04582g01003.1	sp|B8G4Q6|FTSH_CHLAD	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR007330 (MIT), IPR015415 (Vps4 oligomerisation, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00347g00016.1			Unknown protein		
Niben101Scf01266g01046.1	sp|Q6P2B1|TNPO3_MOUSE	--*-	Transportin-3		
Niben101Scf02437g04010.1	sp|P10691|SUS1_SOLTU	****	Sucrose synthase	IPR012820 (Sucrose synthase, plant/cyanobacteria)	GO:0005985 (sucrose metabolic process), GO:0009058 (biosynthetic process), GO:0016157 (sucrose synthase activity)
Niben101Scf00305g01013.1	sp|O23225|PUB5_ARATH	***-	U-box domain-containing protein 5	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf01438g09021.1	gb|AAF76312.1|AF220603_4	*-*-	Prf [Solanum lycopersicum]		
Niben101Scf12765g01015.1	emb|CAA67813.1|	*-*-	extensin-like protein Dif10 [Solanum lycopersicum]		
Niben101Scf05922g01001.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf08690g02020.1	sp|Q9M358|UVSSA_ARATH	***-	UV-stimulated scaffold protein A homolog	IPR008942 (ENTH/VHS), IPR018610 (Protein of unknown function DUF2043)	
Niben101Scf04410g01005.1	AT5G15740.1	***-	O-fucosyltransferase family protein LENGTH=508	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf28062g00001.1	sp|P30172|ACT12_SOLTU	***-	Actin-100	IPR004000 (Actin family)	
Niben101Scf03354g00006.1	AT5G23850.1	***-	Arabidopsis thaliana protein of unknown function (DUF821) LENGTH=542	IPR006598 (Lipopolysaccharide-modifying protein)	
Niben101Scf03257g02012.1	sp|Q9FVV1|GDL28_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04892g00003.1	sp|P93311|RM02_ARATH	*-*-	60S ribosomal protein L2, mitochondrial		
Niben101Scf00465g02015.1	sp|Q1LUI2|HDDC2_DANRE	***-	HD domain-containing protein 2	IPR006674 (HD domain)	
Niben101Scf03085g04007.1	sp|A2WNF5|GLU2B_ORYSI	*-*-	Glucosidase 2 subunit beta		
Niben101Scf03031g04010.1	sp|Q9LR47|IP5P3_ARATH	*-*-	Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf03450g00015.1	sp|Q2J7E7|MDH_FRASC	****	Malate dehydrogenase	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf02914g01004.1	sp|Q9LZC3|MASY_ARATH	****	Malate synthase	IPR001465 (Malate synthase), IPR011076 (Malate synthase-like)	GO:0003824 (catalytic activity), GO:0004474 (malate synthase activity), GO:0006097 (glyoxylate cycle)
Niben101Scf01375g08013.1	sp|Q8LG95|PP332_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00911g02013.1	gb|AAU89199.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf09353g03003.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04509g01021.1			Unknown protein		
Niben101Scf00322g00002.1	gb|EMT07942.1|	*-*-	Protein-tyrosine phosphatase mitochondrial 1-like protein [Aegilops tauschii]	IPR029021 (Protein-tyrosine phosphatase-like)	
Niben101Scf01372g01011.1	AT2G36000.1	****	Mitochondrial transcription termination factor family protein LENGTH=333	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03759g01003.1	sp|Q93VH6|GIF3_ARATH	*-*-	GRF1-interacting factor 3	IPR007726 (SS18 family)	
Niben101Scf00646g05014.1	sp|Q92355|SEN1_SCHPO	*-*-	Helicase sen1	IPR026852 (Helicase Sen1-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf13229g04003.1	gb|AFW84079.1|	***-	secondary cell wall glycosyltransferase family 47 [Zea mays]	IPR004263 (Exostosin-like)	
Niben101Scf03555g01005.1	AT3G07620.1	***-	Exostosin family protein LENGTH=470	IPR004263 (Exostosin-like)	
Niben101Scf06906g00001.1	ref|XP_003627123.1|	***-	EPIDERMAL PATTERNING FACTOR-like protein [Medicago truncatula]		
Niben101Scf03309g00004.1	sp|Q94F40|GDL9_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf03455g01031.1	sp|P27493|CB22_TOBAC	***-	Chlorophyll a-b binding protein 21, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf06248g00007.1	dbj|BAA21495.1|	-**-	metallocarboxypeptidase inhibitor [Solanum tuberosum]		
Niben101Scf17701g01016.1	sp|Q9FJ25|GDL81_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01634g00019.1	gb|KGR09773.1|	***-	ribosomal RNA-processing protein 12 [Candida albicans P37037]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04872g00008.1	sp|D4GYV5|SUFS_HALVD	***-	Cysteine desulfurase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf10916g00003.1	sp|A4YHV0|RPOL_METS5	****	DNA-directed RNA polymerase subunit L	IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf02245g01006.1	sp|Q9M7R0|ALL8_OLEEU	*-**	Calcium-binding allergen Ole e 8	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01684g02010.1			Unknown protein		
Niben101Scf01475g00006.1	AT1G22400.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01124g26001.1	AT1G10940.2	****	Protein kinase superfamily protein LENGTH=371	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00372g01008.1	ref|XP_002534597.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF27784.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08355g04015.1			Unknown protein		
Niben101Scf02822g03004.1	sp|Q93Y38|GDT13_ARATH	***-	GDT1-like protein 3	IPR001727 (Uncharacterised protein family UPF0016)	GO:0016020 (membrane)
Niben101Scf02147g01005.1	sp|P51279|PSAD_PORPU	****	Photosystem I reaction center subunit II	IPR003685 (Photosystem I PsaD)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf06958g01002.1	AT5G39950.1	***-	thioredoxin 2 LENGTH=133	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf06019g01027.1			Unknown protein		
Niben101Scf02222g00019.1	sp|Q9FE67|ERF80_ARATH	*-**	Ethylene-responsive transcription factor 9	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08478g06020.1	sp|F6Z5C0|UBP15_XENTR	*-**	Ubiquitin carboxyl-terminal hydrolase 15	IPR001607 (Zinc finger, UBP-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0008270 (zinc ion binding), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf10232g02004.1	sp|P22242|DRPE_CRAPL	***-	Desiccation-related protein PCC13-62		
Niben101Scf00282g02005.1	sp|Q7NZU6|MSBA_CHRVO	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf08899g00008.1	gb|ACZ64221.1|	***-	RPM1 interacting protein 4 transcript 2 [Lactuca saligna]	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf01463g04013.1	dbj|BAD66730.1|	***-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf00024g00006.1	AT1G70000.1	***-	myb-like transcription factor family protein LENGTH=261	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06310g00007.1	AT3G10560.1	***-	Cytochrome P450 superfamily protein LENGTH=514	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00730g02004.1	sp|Q9VTG7|B3G2P_DROME	*-**	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P	IPR005027 (Glycosyl transferase, family 43), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0015018 (galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity), GO:0016020 (membrane)
Niben101Scf02803g03008.1	sp|Q01H90|LDL3_ORYSI	***-	Lysine-specific histone demethylase 1 homolog 3	IPR002937 (Amine oxidase), IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR016040 (NAD(P)-binding domain)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00735g04001.1	emb|CDY03627.1|	*-*-	BnaC03g68860D [Brassica napus]		
Niben101Scf00318g06005.1	gb|AES71403.2|	*-*-	pollen defective IN guidance-like protein [Medicago truncatula]		
Niben101Scf00270g05016.1	sp|Q00916|RU17_YEAST	*-*-	U1 small nuclear ribonucleoprotein 70 kDa homolog	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf11604g00006.1	sp|Q6BK66|CCS1_DEBHA	****	Superoxide dismutase 1 copper chaperone	IPR001424 (Superoxide dismutase, copper/zinc binding domain), IPR006121 (Heavy metal-associated domain, HMA)	GO:0006801 (superoxide metabolic process), GO:0030001 (metal ion transport), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03886g04004.1	AT3G48710.1	*-*-	DEK domain-containing chromatin associated protein LENGTH=462	IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding)
Niben101Scf19266g00006.1	sp|Q40477|ERF4_TOBAC	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00117g01003.1	AT4G24290.2	*-*-	MAC/Perforin domain-containing protein LENGTH=606		
Niben101Scf03710g01004.1	sp|Q43804|OLEO1_PRUDU	***-	Oleosin 1	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf07937g01006.1	emb|CDX79832.1|	***-	BnaA05g03240D [Brassica napus]		
Niben101Scf01549g00009.1	sp|B0FGA9|GAS2_HELAN	*-**	Germacrene A synthase 2	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf14299g00019.1			Unknown protein	IPR010800 (Glycine rich protein)	
Niben101Scf29888g00014.1	AT5G63400.1	****	adenylate kinase 1 LENGTH=246	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004017 (adenylate kinase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0016776 (phosphotransferase activity, phosphate group as acceptor), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf01664g03005.1	sp|Q949R4|DIOXL_ARATH	***-	Extradiol ring-cleavage dioxygenase	IPR004183 (Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B), IPR014436 (Extradiol aromatic ring-opening dioxygenase, DODA type)	GO:0006725 (cellular aromatic compound metabolic process), GO:0008198 (ferrous iron binding), GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0016701 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen), GO:0055114 (oxidation-reduction process)
Niben101Scf02340g08001.1	sp|Q7ZU90|CHD1L_DANRE	*-**	Chromodomain-helicase-DNA-binding protein 1-like	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding)
Niben101Scf04113g12013.1	AT5G42770.2	***-	Maf-like protein LENGTH=233	IPR029001 (Inosine triphosphate pyrophosphatase-like)	GO:0005737 (cytoplasm)
Niben101Scf09710g00029.1	sp|B2UYB3|RL2_CLOBA	--*-	50S ribosomal protein L2	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03385g01006.1	AT2G15220.1	***-	Plant basic secretory protein (BSP) family protein LENGTH=225	IPR007541 (Uncharacterised protein family, basic secretory protein)	
Niben101Scf12305g00001.1	sp|Q6IP06|STK3_XENLA	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03735g03010.1	sp|Q69SG5|GUN24_ORYSJ	***-	Endoglucanase 24	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf25765g00005.1	AT2G43010.1	*-*-	phytochrome interacting factor 4 LENGTH=430		
Niben101Scf08884g00006.1	ref|NP_178257.1|	*-*-	O-fuc [Arabidopsis thaliana]	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf00408g11001.1	gb|EXX60585.1|	--*-	Pub1p [Rhizophagus irregularis DAOM 197198w]		
Niben101Scf13694g00006.1	sp|O14072|ATC4_SCHPO	*-**	Manganese-transporting ATPase 4	IPR006544 (P-type ATPase, subfamily  V)	GO:0000166 (nucleotide binding), GO:0006812 (cation transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0046872 (metal ion binding)
Niben101Scf01749g04009.1	sp|Q69ZM6|STK36_MOUSE	*-**	Serine/threonine-protein kinase 36	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07648g00006.1	gb|AID60149.1|	***-	At4g33800-like protein [Brassica napus]		
Niben101Scf00611g11026.1	AT5G11970.1	*-*-	Protein of unknown function (DUF3511) LENGTH=105	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf05824g08001.1	AT4G36590.1	***-	MADS-box transcription factor family protein LENGTH=248	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf02679g00008.1	sp|Q9CX48|ZCH10_MOUSE	*-*-	Zinc finger CCHC domain-containing protein 10		
Niben101Scf12676g00007.1	emb|CDY06696.1|	--*-	BnaA10g04750D [Brassica napus]		
Niben101Scf02610g01018.1	emb|CDX68330.1|	***-	BnaA07g23700D [Brassica napus]		
Niben101Scf00371g03002.1	sp|Q09X28|RR2_MORIN	*-*-	30S ribosomal protein S2, chloroplastic	IPR001865 (Ribosomal protein S2), IPR007822 (Lanthionine synthetase C-like), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00225g03004.1			Unknown protein		
Niben101Scf00077g00018.1	sp|Q9M612|NACA_PINTA	***-	Nascent polypeptide-associated complex subunit alpha-like protein	IPR016641 (Nascent polypeptide-associated complex subunit alpha)	GO:0005515 (protein binding)
Niben101Scf00375g00001.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06392g02007.1	sp|Q42580|PER21_ARATH	*-**	Peroxidase 21	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf14390g00005.1	sp|Q5BIY5|RN145_XENLA	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05343g01003.1	AT1G67420.2	*-*-	Zn-dependent exopeptidases superfamily protein LENGTH=922		
Niben101Scf15476g00004.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf03227g05013.1	gb|EMT31861.1|	****	IAA-amino acid hydrolase ILR1-like protein 8 [Aegilops tauschii]	IPR002933 (Peptidase M20)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf00408g03005.1	sp|P69103|GBLP_TRYBB	*-**	Guanine nucleotide-binding protein subunit beta-like protein	IPR006594 (LisH dimerisation motif), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf09140g01005.1	AT5G19830.1	****	Peptidyl-tRNA hydrolase family protein LENGTH=219	IPR001328 (Peptidyl-tRNA hydrolase)	GO:0004045 (aminoacyl-tRNA hydrolase activity)
Niben101Scf02044g12015.1	sp|Q8IWA0|WDR75_HUMAN	***-	WD repeat-containing protein 75	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02142g02002.1	sp|Q40507|GBB3_TOBAC	*-**	Guanine nucleotide-binding protein subunit beta	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR022052 (Histone-binding protein RBBP4, N-terminal)	GO:0005515 (protein binding)
Niben101Scf01711g00009.1	sp|Q46IR0|RL4_PROMT	*-*-	50S ribosomal protein L4	IPR002136 (Ribosomal protein L4/L1e), IPR023574 (Ribosomal protein L4 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf11071g02001.1	AT5G38260.1	*-*-	Protein kinase superfamily protein LENGTH=638		
Niben101Scf06514g02008.1	sp|Q5SPR8|ESCO2_DANRE	*-*-	N-acetyltransferase ESCO2	IPR028009 (N-acetyltransferase ESCO, acetyl-transferase domain)	
Niben101Scf07823g00024.1			Unknown protein		
Niben101Scf01991g02022.1	sp|Q9M884|MPI1_ARATH	****	Mannose-6-phosphate isomerase 1	IPR001250 (Mannose-6-phosphate isomerase, type I)	GO:0004476 (mannose-6-phosphate isomerase activity), GO:0005975 (carbohydrate metabolic process), GO:0008270 (zinc ion binding), GO:0009298 (GDP-mannose biosynthetic process)
Niben101Scf04639g00001.1	dbj|BAB11196.1|	--*-	mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf04329g05013.1	sp|Q9LXZ3|FB204_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05776g01037.1	sp|Q2RPA4|ATP6_RHORT	****	ATP synthase subunit a	IPR000568 (ATPase, F0 complex, subunit A)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf03964g04030.1	sp|Q1LUI2|HDDC2_DANRE	***-	HD domain-containing protein 2	IPR003607 (HD/PDEase domain)	
Niben101Scf09416g03005.1	AT1G23480.1	***-	cellulose synthase-like A3 LENGTH=556	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf00367g10013.1	AT1G49330.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=331		
Niben101Scf05931g03002.1	sp|Q9LM76|PUB44_ARATH	*-*-	U-box domain-containing protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf04979g01012.1	AT5G51140.2	*-**	Pseudouridine synthase family protein LENGTH=410	IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf05149g00005.1	AT3G16510.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=360	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf02339g01003.1	sp|Q3J7X9|HLDD_NITOC	***-	ADP-L-glycero-D-manno-heptose-6-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf01603g00005.1	sp|Q9DB29|IAH1_MOUSE	***-	Isoamyl acetate-hydrolyzing esterase 1 homolog	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00498g00006.1	sp|F4K687|NMNAT_ARATH	*-*-	Nicotinamide mononucleotide adenylyltransferase	IPR005248 (Probable nicotinate-nucleotide adenylyltransferase)	GO:0009435 (NAD biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf08512g00009.1	AT2G19160.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=394	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf04081g03001.1	AT5G07900.1	****	Mitochondrial transcription termination factor family protein LENGTH=405	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05848g03015.1	AT1G65560.1	****	Zinc-binding dehydrogenase family protein LENGTH=350	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02427g03008.1	AT3G19540.1	***-	Protein of unknown function (DUF620) LENGTH=485	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf06076g00009.1	sp|Q94KT8|COBRA_ARATH	***-	Protein COBRA	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Ctg10215g00001.1	ref|NP_001154673.1|	*-*-	5'-3' exonuclease family protein [Arabidopsis thaliana] gb|AEE78883.1| 5'-3' exonuclease family protein [Arabidopsis thaliana]	IPR029060 (PIN domain-like)	
Niben101Scf10298g03006.1	sp|P42696|RBM34_HUMAN	*-**	RNA-binding protein 34	IPR002483 (PWI domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0006397 (mRNA processing)
Niben101Scf00066g05007.1	AT5G59410.1	***-	Rab5-interacting family protein LENGTH=130	IPR029008 (Rab5-interacting protein family)	
Niben101Scf07652g02017.1	AT4G08455.1	***-	BTB/POZ domain-containing protein LENGTH=243	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf06650g03003.1	gb|AES82595.2|	***-	acetyltransferase (GNAT) domain protein [Medicago truncatula]	IPR016181 (Acyl-CoA N-acyltransferase)	
Niben101Scf02653g00003.1	sp|Q5A4W8|BDF1_CANAL	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf05644g01001.1	sp|Q8L8A7|GRF4_ARATH	***-	Growth-regulating factor 4	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf03374g06002.1	sp|Q6ASY2|NLTL1_ORYSJ	--*-	Non-specific lipid transfer protein-like 1	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02413g02012.1	sp|Q53NF7|NAC71_ORYSJ	*-*-	NAC domain-containing protein 71	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf22195g00016.1	ref|XP_003607265.1|	***-	Fasciclin-like arabinogalactan protein [Medicago truncatula]	IPR000782 (FAS1 domain)	
Niben101Scf09612g00005.1	sp|O45379|ARL3_CAEEL	***-	ADP-ribosylation factor-like protein 3	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport)
Niben101Scf01671g05003.1	AT3G17510.1	****	CBL-interacting protein kinase 1 LENGTH=444	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07162g05029.1	sp|Q9SHK2|PPR17_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00956g01005.1	AT2G28085.1	***-	SAUR-like auxin-responsive protein family LENGTH=124	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf33507g00004.1	sp|Q94JM3|ARFB_ARATH	*-*-	Auxin response factor 2	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf12414g01005.1	gb|ABD32321.2|	*-**	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Ctg10121g00001.1	AT3G03680.1	*-**	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1017	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf04626g01006.1	sp|Q9LFT1|TBL21_ARATH	***-	Protein trichome birefringence-like 21	IPR026057 (PC-Esterase)	
Niben101Scf10627g02003.1	ref|XP_001420345.1|	****	P-ATPase family transporter: copper ion; heavy metal transporting P-type ATPase-like protein [ [Ostreococcus lucimarinus CCE9901]	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf00063g05003.1	sp|Q9LGV5|CIPK1_ORYSJ	*-**	CBL-interacting protein kinase 1	IPR009060 (UBA-like), IPR011009 (Protein kinase-like domain), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02812g03005.1	sp|Q9CSH3|RRP44_MOUSE	*-*-	Exosome complex exonuclease RRP44	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf05712g03020.1	sp|P42813|RNS1_ARATH	****	Ribonuclease 1	IPR001568 (Ribonuclease T2-like)	GO:0003723 (RNA binding), GO:0033897 (ribonuclease T2 activity)
Niben101Scf02922g01032.1	sp|Q8L608|HPSE2_ARATH	***-	Heparanase-like protein 2	IPR005199 (Glycoside hydrolase, family 79)	GO:0016020 (membrane), GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf03510g01005.1	sp|A9KN01|GPMA_CLOPH	****	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0004619 (phosphoglycerate mutase activity), GO:0006096 (glycolytic process), GO:0008152 (metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf00383g03001.1	sp|A9KIG5|FTSH_CLOPH	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf03194g01013.1	sp|P55339|ECSA_BACSU	*-**	ABC-type transporter ATP-binding protein EcsA	IPR003439 (ABC transporter-like), IPR026082 (ABC transporter A, ABCA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005215 (transporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity)
Niben101Scf00854g02041.1	gb|AFI44273.1|	*-**	rib L5 (mitochondrion) [Silene vulgaris]	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06954g03017.1	sp|A1RSE1|RL13_PYRIL	****	50S ribosomal protein L13	IPR005822 (Ribosomal protein L13), IPR023563 (Ribosomal protein L13, conserved site), IPR023564 (Ribosomal protein L13 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf11960g00002.1	AT5G05690.1	***-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10482g01014.1	gb|KEH27793.1|	***-	homeobox transcription factor [Medicago truncatula]	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04334g05005.1	sp|O48822|Y2794_ARATH	***-	WEB family protein		
Niben101Scf14995g00005.1	sp|Q9EXP2|SUFS_DICD3	*-*-	Cysteine desulfurase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf17490g00022.1	AT3G07180.1	****	GPI transamidase component PIG-S-related LENGTH=599	IPR019540 (Phosphatidylinositol-glycan biosynthesis class S protein)	GO:0016255 (attachment of GPI anchor to protein), GO:0042765 (GPI-anchor transamidase complex)
Niben101Scf05135g06003.1	AT4G08800.1	*-**	Protein kinase superfamily protein LENGTH=285	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03302g02007.1	sp|Q50940|CAH_NEIGO	***-	Carbonic anhydrase	IPR001148 (Alpha carbonic anhydrase), IPR023561 (Carbonic anhydrase, alpha-class)	GO:0004089 (carbonate dehydratase activity), GO:0006730 (one-carbon metabolic process), GO:0008270 (zinc ion binding)
Niben101Scf01063g10002.1	sp|Q8RWS8|PP199_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain), IPR018087 (Glycoside hydrolase, family 5, conserved site)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005515 (protein binding), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01825g02017.1			Unknown protein		
Niben101Scf01314g01010.1	sp|F4KBW6|NU205_ARATH	****	Nuclear pore complex protein NUP205	IPR021827 (Nucleoporin Nup186/Nup192/Nup205)	GO:0005643 (nuclear pore)
Niben101Scf06432g00004.1			Unknown protein		
Niben101Scf05588g08004.1	ref|XP_002523935.1|	****	hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gb|EEF38422.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03186g01004.1	emb|CDY04581.1|	***-	BnaA07g14070D [Brassica napus]	IPR012862 (Protein of unknown function DUF1635)	
Niben101Scf00448g00003.1	gb|KEH44137.1|	--*-	RING/FYVE/PHD zinc finger protein [Medicago truncatula]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf13741g02016.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf00854g01022.1	gb|ADV15953.1|	*-*-	maturase, partial (mitochondrion) [Syringa vulgaris]		
Niben101Scf01538g01009.1	AT1G17580.1	*-**	myosin 1 LENGTH=1520	IPR000048 (IQ motif, EF-hand binding site), IPR002710 (Dilute), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf02511g08002.1	sp|O64896|TPPA_ARATH	****	Trehalose-phosphate phosphatase A	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf05078g00004.1	AT5G13180.1	***-	NAC domain containing protein 83 LENGTH=252	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01934g03007.1	AT3G57240.1	*-*-	beta-1,3-glucanase 3 LENGTH=341	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02014g00026.1	AT5G54370.1	***-	Late embryogenesis abundant (LEA) protein-related LENGTH=337	IPR009646 (Root cap)	
Niben101Scf08053g01006.1	sp|Q9LNT9|ASK4_ARATH	***-	SKP1-like protein 4	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf12609g01007.1	sp|Q9SKK0|EBF1_ARATH	****	EIN3-binding F-box protein 1	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf07459g00035.1	sp|O64644|SAP18_ARATH	***-	Histone deacetylase complex subunit SAP18	IPR010516 (Sin3 associated polypeptide p18)	
Niben101Scf02480g00001.1	emb|CDX73444.1|	*-*-	BnaC08g25590D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant), IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf13916g01021.1	sp|Q5ISE2|Z36L3_MOUSE	--*-	Zinc finger protein 36, C3H1 type-like 3	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf00981g04003.1	sp|Q0D9R7|ARFS_ORYSJ	*-**	Auxin response factor 19	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf02972g01003.1	sp|Q7YKY5|MATK_CHACO	--*-	Maturase K	IPR000477 (Reverse transcriptase domain), IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf06829g03009.1	sp|Q5BU09|EAPP_MOUSE	***-	E2F-associated phosphoprotein	IPR019370 (E2F-associated phosphoprotein)	
Niben101Scf12593g00003.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf12280g01010.1	sp|P57453|DEAD_BUCAI	****	ATP-dependent RNA helicase DeaD	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf03038g17020.1	gb|KEH20669.1|	*-*-	alpha/beta-hydrolase superfamily protein [Medicago truncatula]	IPR007751 (Domain of unknown function DUF676, lipase-like)	
Niben101Scf11814g00004.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf03432g00008.1	sp|Q9LUV4|FRL4A_ARATH	*-*-	FRIGIDA-like protein 4a	IPR012474 (Frigida-like)	
Niben101Scf04396g04015.1	AT1G53645.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=523		
Niben101Scf01517g08025.1	ref|XP_002534066.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF28310.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07925g00019.1			Unknown protein		
Niben101Scf00854g04055.1			Unknown protein		
Niben101Scf03103g00018.1	sp|P98205|ALA2_ARATH	****	Phospholipid-transporting ATPase 2	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf02247g00026.1	sp|Q9SE51|SURF1_ARATH	***-	Surfeit locus protein 1	IPR002994 (Surfeit locus 1/Shy1)	GO:0016020 (membrane)
Niben101Scf04328g00009.1	sp|Q9LQT8|GAI_ARATH	***-	DELLA protein GAI	IPR005202 (Transcription factor GRAS), IPR021914 (Transcriptional factor DELLA, N-terminal), IPR030006 (Transcriptional factor DELLA)	GO:0000989 (transcription factor binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf02816g01014.1	sp|O23969|SF21_HELAN	***-	Pollen-specific protein SF21	IPR004142 (NDRG), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05434g01010.1	ref|XP_003592571.1|	*-*-	Tetratricopeptide repeat protein [Medicago truncatula]		
Niben101Scf10866g02003.1	gb|ABF95616.1|	*-*-	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]	IPR029472 (Gag-polypeptide of LTR copia-type)	
Niben101Scf01005g02013.1	sp|Q9M9V8|CDPKA_ARATH	*-**	Calcium-dependent protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04455g04017.1	sp|Q3E902|RS212_ARATH	***-	40S ribosomal protein S21-2	IPR001931 (Ribosomal protein S21e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04830g00008.1	sp|Q9Y5M8|SRPRB_HUMAN	--*-	Signal recognition particle receptor subunit beta	IPR019009 (Signal recognition particle receptor, beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf05486g01003.1	AT1G15000.1	****	serine carboxypeptidase-like 50 LENGTH=444	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR011990 (Tetratricopeptide-like helical domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf01735g00005.1	AT1G37130.1	****	nitrate reductase 2 LENGTH=917	IPR001433 (Oxidoreductase FAD/NAD(P)-binding), IPR001834 (NADH:cytochrome b5 reductase (CBR)), IPR008335 (Eukaryotic molybdopterin oxidoreductase), IPR014756 (Immunoglobulin E-set), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0009055 (electron carrier activity), GO:0016491 (oxidoreductase activity), GO:0030151 (molybdenum ion binding), GO:0043546 (molybdopterin cofactor binding), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03851g00010.1	ref|NP_001274279.1|	--*-	nodulin-26-like [Solanum lycopersicum] dbj|BAO18644.1| nodulin26-like intrinsic protein 3;1 [Solanum lycopersicum]		
Niben101Scf21900g00002.1	sp|Q9LFC5|PP360_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01660g02008.1	sp|Q9LUE2|TPS18_ARATH	*-**	Terpenoid synthase 18	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf07188g00013.1	sp|B4U7U4|FTSH_HYDS0	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf07532g02010.1	AT1G12310.1	****	Calcium-binding EF-hand family protein LENGTH=148	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02444g00024.1	gb|AFL55357.1|	*-*-	Fanconia anemia complementation group M-like protein [Arabidopsis thaliana]		
Niben101Scf04103g06002.1	sp|F4JWS8|QCR72_ARATH	****	Cytochrome b-c1 complex subunit 7-2	IPR003197 (Cytochrome b-c1 complex subunit 7)	GO:0005750 (mitochondrial respiratory chain complex III), GO:0006122 (mitochondrial electron transport, ubiquinol to cytochrome c)
Niben101Scf01498g03002.1			Unknown protein		
Niben101Scf03644g02005.1	sp|B7ID58|BIOF_THEAB	*-*-	8-amino-7-oxononanoate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf05135g06002.1	sp|O67820|IMDH_AQUAE	*-*-	Inosine-5'-monophosphate dehydrogenase	IPR000644 (CBS domain)	
Niben101Scf09436g00008.1	AT2G31500.1	****	calcium-dependent protein kinase 24 LENGTH=582	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01240g05001.1	AT1G80160.1	***-	Lactoylglutathione lyase / glyoxalase I family protein LENGTH=167	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf05588g11007.1	sp|Q9ZQG9|E1314_ARATH	***-	Glucan endo-1,3-beta-glucosidase 14	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00553g04007.1	sp|Q84WP6|NAC43_ARATH	***-	NAC domain-containing protein 43	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02740g10001.1	sp|Q8RW98|BRK1_MAIZE	***-	Protein BRICK1	IPR019466 (Matrilin, coiled-coil trimerisation domain)	
Niben101Scf17255g00011.1	sp|Q9S793|FRS8_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 8	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf01859g09002.1	gb|ACX37401.1|	***-	conserved telomere maintenance component 1 [Arabidopsis thaliana]		
Niben101Ctg12433g00001.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf04334g05004.1	emb|CDY56587.1|	***-	BnaC07g48120D [Brassica napus]		
Niben101Scf09417g02004.1	gb|AAA34063.1|	*-*-	cysteine-rich extensin-like protein [Nicotiana tabacum]		
Niben101Scf05060g04009.1	sp|A5GKI7|GLGA_SYNPW	****	Glycogen synthase	IPR011835 (Glycogen/starch synthase, ADP-glucose type)	GO:0009011 (starch synthase activity), GO:0009058 (biosynthetic process), GO:0009250 (glucan biosynthetic process)
Niben101Scf00321g01013.1	ref|XP_002521845.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF40481.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00606g03021.1	AT5G66530.1	***-	Galactose mutarotase-like superfamily protein LENGTH=307	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf06954g03016.1	sp|O65055|RL13A_PICMA	****	60S ribosomal protein L13a	IPR005822 (Ribosomal protein L13), IPR023564 (Ribosomal protein L13 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf09436g05005.1	sp|Q6LXN1|RS13_METMP	***-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH), IPR027437 (30s ribosomal protein S13, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02438g00008.1			Unknown protein		
Niben101Scf07459g00033.1			Unknown protein		
Niben101Scf04871g12003.1	AT5G64130.3	***-	cAMP-regulated phosphoprotein 19-related protein LENGTH=140	IPR006760 (Endosulphine)	
Niben101Scf02248g01003.1	ref|WP_008276936.1|	***-	polyketide cyclase [Cyanothece sp. CCY0110] gb|EAZ89954.1| hypothetical protein CY0110_07154 [Cyanothece sp. CCY0110]		
Niben101Scf01063g02018.1	AT5G16750.1	***-	Transducin family protein / WD-40 repeat family protein LENGTH=876	IPR013934 (Small-subunit processome, Utp13), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding), GO:0006364 (rRNA processing), GO:0032040 (small-subunit processome)
Niben101Scf02290g05019.1	sp|Q940T9|COL4_ARATH	*-*-	Zinc finger protein CONSTANS-LIKE 4	IPR010402 (CCT domain)	GO:0005515 (protein binding)
Niben101Scf03929g05004.1			Unknown protein		
Niben101Scf02502g12002.1	sp|Q5ZL00|EMC1_CHICK	****	ER membrane protein complex subunit 1	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR011678 (Domain of unknown function DUF1620), IPR026895 (ER membrane protein complex subunit 1)	GO:0072546 (ER membrane protein complex)
Niben101Scf01237g04004.1	sp|Q3A9U1|RS13_CARHZ	***-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH), IPR027437 (30s ribosomal protein S13, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf28230g00018.1	sp|B5RLI7|RS18_BORDL	*-*-	30S ribosomal protein S18	IPR001648 (Ribosomal protein S18)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03852g04003.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00090g10002.1			Unknown protein		
Niben101Scf03370g04008.1	AT5G07050.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=402	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf00376g03010.1	AT3G48800.1	***-	Sterile alpha motif (SAM) domain-containing protein LENGTH=278	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf02237g01007.1	sp|P56533|BADH_GADMC	****	Betaine aldehyde dehydrogenase	IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf04926g01003.1	sp|Q9FJN9|PABN2_ARATH	*-*-	Polyadenylate-binding protein 2		
Niben101Scf02407g03010.1	gb|KEH23434.1|	***-	PRA1 family protein [Medicago truncatula]	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf03046g05003.1	sp|P27056|NLTP1_SOLLC	****	Non-specific lipid-transfer protein 1	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf04290g00010.1	sp|Q9CA64|PRE3_ARATH	***-	Transcription factor PRE3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05588g08006.1	ref|XP_002523935.1|	****	hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gb|EEF38422.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02243g04001.1	sp|O82268|LSH3_ARATH	*-*-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3	IPR006936 (ALOG domain)	
Niben101Scf02173g00001.1	AT5G54010.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=453	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04406g04005.1	gb|ABV68563.1|	***-	A9 protein [Brassica napus]	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00326g01020.1	gb|AFW74647.1|	--*-	membrane protein [Zea mays]		
Niben101Scf06739g06004.1			Unknown protein		
Niben101Scf03038g01006.1	sp|P82787|DEF19_ARATH	-**-	Defensin-like protein 19	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf07103g03016.1	AT2G15620.1	****	nitrite reductase 1 LENGTH=586	IPR005117 (Nitrite/Sulfite reductase ferredoxin-like domain), IPR006067 (Nitrite/sulphite reductase 4Fe-4S domain)	GO:0016491 (oxidoreductase activity), GO:0020037 (heme binding), GO:0051536 (iron-sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf18057g00001.1	sp|E9QAU8|RN165_MOUSE	--*-	RING finger protein 165	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04477g00004.1	ref|XP_002522942.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF39372.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf14180g00007.1	ref|XP_002510275.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52462.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05030g00001.1	AT4G08850.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02869g02008.1	sp|Q9FRI5|PPR57_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02594g03008.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf03045g11001.1	AT3G26600.1	***-	armadillo repeat only 4 LENGTH=615	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf03536g02014.1	gb|EEQ87690.1|	--*-	conserved hypothetical protein [Ajellomyces dermatitidis ER-3]		
Niben101Scf00123g06010.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06078g02030.1	AT5G61630.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=147		
Niben101Scf01291g01010.1	sp|Q9BXX3|AN30A_HUMAN	--*-	Ankyrin repeat domain-containing protein 30A		
Niben101Scf00176g03001.1	sp|Q9LQ27|TPS22_ARATH	****	Terpenoid synthase 22	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf01301g00008.1	AT1G80270.1	***-	PENTATRICOPEPTIDE REPEAT 596 LENGTH=596	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00839g02005.1			Unknown protein		
Niben101Scf03028g03024.1	ref|YP_009049648.1|	*-*-	rib S4 (mitochondrion) [Capsicum annuum]		
Niben101Scf02772g05001.1	sp|Q29236|TCPZ_PIG	*-*-	T-complex protein 1 subunit zeta	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf02802g00007.1	AT2G01080.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=231	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf06190g01001.1	AT1G15290.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=1608	IPR011990 (Tetratricopeptide-like helical domain), IPR028275 (Clustered mitochondria protein, N-terminal)	GO:0005515 (protein binding)
Niben101Scf05516g01004.1	AT1G04030.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=434		
Niben101Scf05934g00002.1	ref|XP_002516081.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF46501.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf18745g01010.1	gb|KEH34683.1|	***-	cold-regulated protein, putative [Medicago truncatula]		
Niben101Scf00419g00020.1			Unknown protein		
Niben101Scf00279g06014.1	sp|Q9FEP7|SUT13_ARATH	****	Sulfate transporter 1.3	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0005886 (plasma membrane), GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf06748g01002.1	AT5G11910.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=297	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00050g03005.1	sp|Q2HJG5|VPS35_BOVIN	***-	Vacuolar protein sorting-associated protein 35	IPR005378 (Vacuolar protein sorting-associated protein 35, Vps35)	GO:0015031 (protein transport), GO:0030904 (retromer complex), GO:0042147 (retrograde transport, endosome to Golgi)
Niben101Scf00022g01003.1	sp|Q39117|TGT2_ARATH	*-*-	Trihelix transcription factor GT-2	IPR017877 (Myb-like domain)	
Niben101Scf00503g01011.1			Unknown protein		
Niben101Scf14179g00005.1	ref|XP_007011041.1|	--*-	Zinc finger, CCHC-type-like protein [Theobroma cacao] gb|EOY19851.1| Zinc finger, CCHC-type-like protein [Theobroma cacao]		
Niben101Scf00369g17010.1	AT2G45180.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=134	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf05592g00003.1	emb|CDX70870.1|	***-	BnaC03g09540D [Brassica napus]		
Niben101Scf06628g01016.1	sp|O82244|ALG3_ARATH	*-*-	Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase	IPR007873 (Glycosyltransferase, ALG3)	GO:0005783 (endoplasmic reticulum), GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00592g06001.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00410g02016.1	AT5G53440.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). LENGTH=1181		
Niben101Scf06902g00006.1	sp|Q9Y942|TF2B_AERPE	--**	Transcription initiation factor IIB	IPR000812 (Transcription factor TFIIB)	GO:0000126 (transcription factor TFIIIB complex), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0006384 (transcription initiation from RNA polymerase III promoter), GO:0008270 (zinc ion binding), GO:0017025 (TBP-class protein binding)
Niben101Scf01052g06001.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf12427g00011.1	sp|O80919|TBL34_ARATH	***-	Protein trichome birefringence-like 34	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf11424g01001.1	sp|Q9LW49|ERF4_NICSY	****	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00654g04012.1	AT5G56120.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=236		
Niben101Scf04007g01012.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR000118 (Granulin), IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf02118g00018.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR008808 (Powdery mildew resistance protein, RPW8 domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf02571g02004.1	ref|WP_025184043.1|	*-*-	glucose dehydrogenase [Leptospira kirschneri]	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf02056g01003.1	AT3G25410.1	***-	Sodium Bile acid symporter family LENGTH=431	IPR002657 (Bile acid:sodium symporter/arsenical resistance protein  Acr3)	GO:0016020 (membrane)
Niben101Scf02441g01009.1	sp|Q71V09|H4_CAPAN	***-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	
Niben101Scf05173g09001.1			Unknown protein		
Niben101Scf03915g04005.1	sp|Q766C3|NEP1_NEPGR	****	Aspartic proteinase nepenthesin-1	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf21813g00008.1	gb|ABG22017.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf07944g00012.1	sp|Q5XHY1|LR16B_RAT	--*-	Leucine-rich repeat-containing protein 16B		
Niben101Scf10203g00008.1	ref|WP_015115534.1|	***-	phage shock protein A (PspA) family protein [N [Nostoc sp. PCC 7107]	IPR007157 (PspA/IM30)	
Niben101Scf01819g01001.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01886g00002.1	sp|Q5E930|SLAH1_ARATH	****	S-type anion channel SLAH1	IPR004695 (Voltage-dependent anion channel)	GO:0006873 (cellular ion homeostasis), GO:0008308 (voltage-gated anion channel activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03400g02004.1	sp|Q9LQQ4|H2B1_ARATH	***-	Histone H2B.1	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf08333g07021.1	sp|Q5R7R9|SNW1_PONAB	***-	SNW domain-containing protein 1	IPR017862 (SKI-interacting protein, SKIP)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf02790g03012.1	sp|Q7ZUQ3|STK3_DANRE	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05931g03003.1	sp|P53223|CAX4_YEAST	--*-	Dolichyldiphosphatase	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Scf01779g00009.1	sp|P0CM95|CWC21_CRYNB	*-*-	Pre-mRNA-splicing factor CWC21	IPR013170 (mRNA splicing factor, Cwf21)	
Niben101Scf00128g01010.1	ref|XP_002511374.1|	****	nucleotide binding protein, putative [Ricinus communis] gb|EEF51976.1| nucleotide binding protein, putative [Ricinus communis]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02636g07006.1			Unknown protein		
Niben101Scf10676g02003.1			Unknown protein		
Niben101Scf03985g04016.1	ref|WP_028176880.1|	*-*-	alpha/beta hydrolase [Bradyrhizobium japonicum]	IPR026555 (KAT8 regulatory NSL complex subunit 3/Testis-expressed sequence 30 protein), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Ctg16134g00004.1	sp|Q99MM4|TRAD1_RAT	*-**	TRAF-type zinc finger domain-containing protein 1	IPR001293 (Zinc finger, TRAF-type)	GO:0008270 (zinc ion binding)
Niben101Scf03147g09006.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf01673g01008.1	ref|XP_007014571.1|	***-	3-ph kinase-1, putative isoform 1 [Theobroma cacao]		
Niben101Scf03947g00009.1	sp|Q43872|PER64_ARATH	****	Peroxidase 64	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00293g05003.1	sp|P48428|TBCA_MOUSE	****	Tubulin-specific chaperone A	IPR004226 (Tubulin binding cofactor A)	GO:0005874 (microtubule), GO:0007021 (tubulin complex assembly), GO:0051082 (unfolded protein binding)
Niben101Scf01450g02001.1	sp|Q9FMZ0|BKI1_ARATH	***-	BRI1 kinase inhibitor 1		
Niben101Scf07048g01012.1	sp|Q9SV43|PLP7_ARATH	***-	Patatin-like protein 7	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0008152 (metabolic process)
Niben101Scf04230g00001.1	sp|Q9SVU5|GDL67_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00861g05006.1	gb|AGZ19463.1|	*-*-	APOLLO [Boechera sp. IPK 11]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf12852g03011.1	ref|NP_001052354.1|	***-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf04046g00002.1	sp|P53756|PDR18_YEAST	****	ABC transporter ATP-binding protein/permease PDR18	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf03421g00002.1	AT5G58960.1	***-	Plant protein of unknown function (DUF641) LENGTH=559	IPR006943 (Domain of unknown function DUF641, plant)	
Niben101Scf04939g02007.1	sp|Q9PW71|DUS4_CHICK	*-**	Dual specificity protein phosphatase 4	IPR007122 (Villin/Gelsolin), IPR024950 (Dual specificity phosphatase), IPR029006 (ADF-H/Gelsolin-like domain), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0003779 (actin binding), GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf02380g00002.1			Unknown protein		
Niben101Scf07261g01010.1	sp|Q54XK2|SC61A_DICDI	****	Protein transport protein Sec61 subunit alpha	IPR002208 (SecY/SEC61-alpha family), IPR023201 (SecY subunit domain)	GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00421g01029.1	AT2G46070.1	****	mitogen-activated protein kinase 12 LENGTH=372	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf16556g00005.1	sp|P0DH90|FRIGI_ARATH	*-*-	Protein FRIGIDA	IPR012474 (Frigida-like)	
Niben101Scf01440g04023.1	sp|Q91W34|RUS1_MOUSE	--*-	RUS1 family protein C16orf58 homolog	IPR006968 (Root UVB sensitive family)	
Niben101Scf21348g00006.1	sp|B0JXB7|UCRI_MICAN	****	Cytochrome b6-f complex iron-sulfur subunit	IPR014349 (Rieske iron-sulphur protein), IPR014909 (Cytochrome b6-f complex Fe-S subunit), IPR023960 (Cytochrome b6-f complex iron-sulfur subunit)	GO:0008121 (ubiquinol-cytochrome-c reductase activity), GO:0009496 (plastoquinol--plastocyanin reductase activity), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0016679 (oxidoreductase activity, acting on diphenols and related substances as donors), GO:0042651 (thylakoid membrane), GO:0045158 (electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01401g01012.1	sp|Q6EU39|MADS6_ORYSJ	*-**	MADS-box transcription factor 6	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03563g00036.1	sp|B8J4E4|SYT_DESDA	****	Threonine--tRNA ligase	IPR002320 (Threonine-tRNA ligase, class IIa)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004829 (threonine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006435 (threonyl-tRNA aminoacylation), GO:0016876 (ligase activity, forming aminoacyl-tRNA and related compounds), GO:0043039 (tRNA aminoacylation)
Niben101Scf06661g04001.1	sp|P73016|FABI_SYNY3	***-	Enoyl-[acyl-carrier-protein] reductase [NADH] FabI	IPR002347 (Glucose/ribitol dehydrogenase)	
Niben101Scf05688g11014.1	sp|Q96GG9|DCNL1_HUMAN	***-	DCN1-like protein 1	IPR009060 (UBA-like), IPR014764 (Defective-in-cullin neddylation protein)	GO:0005515 (protein binding)
Niben101Scf01842g06014.1	AT2G36290.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=364	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05391g03001.1	emb|CDX78854.1|	***-	BnaA01g09210D [Brassica napus]	IPR007770 (Protein of unknown function DUF679)	
Niben101Scf19155g00004.1			Unknown protein		
Niben101Scf04654g02015.1	emb|CDY49697.1|	--*-	BnaA02g27360D [Brassica napus]	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf01396g07022.1	sp|O14717|TRDMT_HUMAN	****	tRNA (cytosine(38)-C(5))-methyltransferase	IPR001525 (C-5 cytosine methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf00783g05024.1	AT5G10250.1	***-	Phototropic-responsive NPH3 family protein LENGTH=607	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain), IPR029959 (Root phototropism protein 3-like)	GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf29047g00008.1	emb|CDY37195.1|	*-*-	BnaC02g35030D [Brassica napus]		
Niben101Scf01222g02007.1	sp|Q55681|RECG_SYNY3	*-*-	ATP-dependent DNA helicase RecG	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf18902g00007.1	emb|CDX68424.1|	***-	BnaC01g25020D [Brassica napus]		
Niben101Scf02385g01003.1	sp|B1I8F2|MUTL_STRPI	*-**	DNA mismatch repair protein MutL	IPR002099 (DNA mismatch repair protein family)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding), GO:0032300 (mismatch repair complex)
Niben101Scf04639g13001.1	sp|Q9FT52|ATP5H_ARATH	****	ATP synthase subunit d, mitochondrial	IPR008689 (ATPase, F0 complex, subunit D, mitochondrial)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf07503g00017.1	AT5G13300.1	****	ARF GTPase-activating protein LENGTH=827	IPR001164 (Arf GTPase activating protein), IPR011993 (Pleckstrin homology-like domain), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf00530g08007.1			Unknown protein		
Niben101Scf01350g03009.1	AT4G34200.1	****	D-3-phosphoglycerate dehydrogenase LENGTH=603	IPR006236 (D-3-phosphoglycerate dehydrogenase), IPR015878 (S-adenosyl-L-homocysteine hydrolase, NAD binding domain), IPR016040 (NAD(P)-binding domain), IPR029009 (Allosteric substrate binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1), IPR029753 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site)	GO:0004617 (phosphoglycerate dehydrogenase activity), GO:0006564 (L-serine biosynthetic process), GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09550g01005.1	sp|Q0WPQ2|ETR2_ARATH	****	Ethylene receptor 2	IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily), IPR014525 (Signal transduction histidine kinase, hybrid-type, ethylene sensor), IPR029016 (GAF domain-like)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004673 (protein histidine kinase activity), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0005789 (endoplasmic reticulum membrane), GO:0007165 (signal transduction), GO:0009873 (ethylene-activated signaling pathway), GO:0016020 (membrane)
Niben101Scf02836g03009.1	AT2G07180.1	****	Protein kinase superfamily protein LENGTH=442	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09696g01121.1	ref|YP_002608396.1|	*-*-	orf86 [Vitis vinifera] emb|CAQ77655.1| orf86 [Vitis vinifera] gb|ACS15212.1| ORF86 [Vitis vinifera]		
Niben101Scf02828g00003.1	AT1G15125.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=351	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf13596g00006.1	AT3G55240.1	*-*-	Plant protein 1589 of unknown function LENGTH=95	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf02793g21010.1	emb|CDX99259.1|	*-*-	BnaC05g33740D [Brassica napus]		
Niben101Scf04592g00023.1	sp|P0A9L7|PPIC_ECO57	*-**	Peptidyl-prolyl cis-trans isomerase C	IPR000297 (Peptidyl-prolyl cis-trans isomerase, PpiC-type), IPR023058 (Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site)	GO:0016853 (isomerase activity)
Niben101Scf01402g00003.1	sp|Q2LVL0|MSBA_SYNAS	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf10232g02006.1	sp|Q6UUW6|CRLC_DICDI	--*-	Cyclic AMP receptor-like protein C		
Niben101Scf01512g06007.1	ref|XP_007039737.1|	--*-	Cyclin F-box [Theobroma cacao] gb|EOY24238.1| Cyclin F-box [Theobroma cacao]		
Niben101Scf01812g04010.1	AT3G56820.1	*-*-	unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). LENGTH=220		
Niben101Scf10158g01038.1	AT4G03500.1	***-	Ankyrin repeat family protein LENGTH=652	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	GO:0005515 (protein binding)
Niben101Scf06956g00014.1	ref|XP_007049662.1|	*-*-	P-loop containing nucle , putative [Theobroma cacao]		
Niben101Scf11830g00009.1	AT2G07739.1	***-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf14771g00001.1	AT1G16860.1	***-	Ubiquitin-specific protease family C19-related protein LENGTH=474		
Niben101Scf16292g00002.1	sp|Q11A13|RS15_TRIEI	***-	30S ribosomal protein S15	IPR000589 (Ribosomal protein S15)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03444g04005.1	AT3G01710.1	*-*-	TPX2 (targeting protein for Xklp2) protein family LENGTH=391		
Niben101Scf00345g01015.1	sp|Q9FLJ4|PP440_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04918g02007.1	sp|D6RJB6|U17LK_HUMAN	*-**	Ubiquitin carboxyl-terminal hydrolase 17-like protein 20	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf01375g08011.1	sp|Q9UXR9|DNAJ_METTE	*-*-	Chaperone protein DnaJ	IPR000008 (C2 domain), IPR001623 (DnaJ domain), IPR004179 (Sec63 domain), IPR014756 (Immunoglobulin E-set), IPR027137 (Translocation protein Sec63)	GO:0005515 (protein binding), GO:0008565 (protein transporter activity), GO:0031204 (posttranslational protein targeting to membrane, translocation)
Niben101Scf01500g01017.1	sp|Q8IZP9|GPR64_HUMAN	--*-	G-protein coupled receptor 64		
Niben101Scf02525g03003.1	AT3G23360.1	***-	Protein phosphatase 2C family protein LENGTH=260	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf04314g02014.1	AT4G32140.1	***-	EamA-like transporter family LENGTH=394	IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf06778g07006.1	sp|Q9SZE7|PER51_ARATH	****	Peroxidase 51	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09885g01022.1	sp|Q9C626|FB37_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf11312g01013.1	AT1G72470.1	****	exocyst subunit exo70 family protein D1 LENGTH=633	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf02039g04011.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf14771g01012.1	sp|Q9C9A9|COL7_ARATH	*-*-	Zinc finger protein CONSTANS-LIKE 7	IPR010402 (CCT domain)	GO:0005515 (protein binding)
Niben101Scf04702g06003.1	sp|Q92095|CP1A1_OPSTA	***-	Cytochrome P450 1A1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01295g02004.1	sp|Q8T277|PRKAG_DICDI	*-*-	5'-AMP-activated protein kinase subunit gamma	IPR000644 (CBS domain), IPR014756 (Immunoglobulin E-set)	
Niben101Scf15094g00001.1	sp|Q4ULG1|ODP2_RICFE	*-*-	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	IPR001078 (2-oxoacid dehydrogenase acyltransferase, catalytic domain), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf02071g02002.1	AT2G46690.1	***-	SAUR-like auxin-responsive protein family LENGTH=121	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf16451g00005.1	sp|Q8LGE9|CSTR1_ARATH	****	CMP-sialic acid transporter 1	IPR004689 (UDP-galactose transporter), IPR007271 (Nucleotide-sugar transporter)	GO:0000139 (Golgi membrane), GO:0005338 (nucleotide-sugar transmembrane transporter activity), GO:0005351 (sugar:proton symporter activity), GO:0008643 (carbohydrate transport), GO:0015780 (nucleotide-sugar transport), GO:0016021 (integral component of membrane)
Niben101Scf01847g05005.1	ref|XP_002528275.1|	--*-	amidase, putative [Ricinus communis] gb|EEF34113.1| amidase, putative [Ricinus communis]	IPR023631 (Amidase signature domain)	
Niben101Scf12197g01001.1	AT4G21940.2	*-**	calcium-dependent protein kinase 15 LENGTH=561	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf10464g00011.1	sp|P52711|CBP23_HORVU	*-**	Serine carboxypeptidase II-3	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00465g02013.1	sp|Q9LI83|ALA10_ARATH	****	Phospholipid-transporting ATPase 10	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf09116g01013.1	AT1G04020.1	***-	breast cancer associated RING 1 LENGTH=714	IPR011364 (Breast cancer type 1 susceptibility protein (BRCA1)), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003677 (DNA binding), GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0008270 (zinc ion binding)
Niben101Scf03436g00010.1	gb|KEH41470.1|	-**-	DUF223 domain protein [Medicago truncatula]		
Niben101Scf01998g11004.1	emb|CDY26231.1|	***-	BnaA06g11860D [Brassica napus]		
Niben101Scf08803g00016.1	ref|XP_003588403.1|	***-	S1 ribosomal protein [Medicago truncatula]		
Niben101Scf02115g01003.1	ref|XP_007011653.1|	*-*-	Kinase superfamily protein isoform 3 [Theobroma cacao] gb|EOY29272.1| Kinase superfamily protein isoform 3 [Theobroma cacao]		
Niben101Scf05932g00003.1	sp|Q6ZMB5|T184A_HUMAN	***-	Transmembrane protein 184A	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184)	
Niben101Scf06668g02002.1	sp|Q9SWE7|VATE_CITLI	****	V-type proton ATPase subunit E	IPR002842 (ATPase, V1/A1 complex, subunit E)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf01341g03008.1	sp|Q9LT67|BH113_ARATH	*-*-	Transcription factor bHLH113	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00213g02002.1	gb|AAA34120.1|	***-	mRNA inducible by salicylic acid or by TMV during Systemic Acquired Resistance response.' [Nicotiana tabacum]	IPR004297 (Systemic acquired resistance protein SAR)	
Niben101Scf10384g01007.1	AT5G59020.1	*-*-	Protein of unknown function (DUF3527) LENGTH=780	IPR021916 (Protein of unknown function DUF3527)	
Niben101Scf14344g01004.1	sp|Q8LBZ4|OTU_ARATH	*-*-	OTU domain-containing protein	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf03942g00003.1	gb|AET01485.2|	***-	Avr9/Cf-9 rapidly elicited protein [Medicago truncatula]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf02538g03019.1	sp|Q9XI60|LPP2_ARATH	*-*-	Lipid phosphate phosphatase 2	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase), IPR028681 (Lipid phosphate phosphatase, plant)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Scf05710g03022.1	sp|Q9CX11|UTP23_MOUSE	***-	rRNA-processing protein UTP23 homolog	IPR006984 (rRNA-processing protein Fcf1/Utp23), IPR029060 (PIN domain-like)	GO:0032040 (small-subunit processome)
Niben101Scf02072g03008.1	sp|O74476|IMB3_SCHPO	***-	Importin subunit beta-3	IPR007598 (Protein of unknown function DUF577), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf02849g02013.1	AT5G66900.1	*-*-	Disease resistance protein (CC-NBS-LRR class) family LENGTH=809		
Niben101Scf04907g00001.1	sp|Q9ZPY6|ARFK_ARATH	*-**	Auxin response factor 11	IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone)
Niben101Scf06311g00001.1	sp|Q9LMK2|LSH6_ARATH	*-*-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	IPR006936 (ALOG domain)	
Niben101Scf02669g02017.1	sp|E0CYC6|NAT8B_MOUSE	--**	N-acetyltransferase 8B	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf09485g00002.1	AT1G79000.2	****	histone acetyltransferase of the CBP family 1 LENGTH=1741	IPR000197 (Zinc finger, TAZ-type), IPR000433 (Zinc finger, ZZ-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013178 (Histone H3-K56 acetyltransferase, RTT109)	GO:0003712 (transcription cofactor activity), GO:0004402 (histone acetyltransferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf00592g00024.1	sp|Q8VZA1|LAC11_ARATH	***-	Laccase-11	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02936g00010.1	AT1G10150.1	***-	Carbohydrate-binding protein LENGTH=414		
Niben101Scf01269g10003.1	AT4G04630.1	***-	Protein of unknown function, DUF584 LENGTH=168	IPR007608 (Senescence regulator S40)	
Niben101Scf01056g05008.1	ref|WP_010001926.1|	*-*-	transcriptional regulator [Leuconostoc lactis]	IPR002876 (Transcriptional regulator TACO1-like), IPR026563 (Transcriptional regulator TACO1-like, domain 2), IPR029072 (YebC-like)	
Niben101Scf02253g07006.1	AT1G10410.1	*-*-	Protein of unknown function (DUF1336) LENGTH=485	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf11734g01012.1	ref|WP_019258082.1|	***-	membrane protein [Bacillus subtilis]	IPR008537 (Protein of unknown function DUF819)	
Niben101Scf07899g00001.1	AT5G36930.2	*-*-	Disease resistance protein (TIR-NBS-LRR class) family LENGTH=1191	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf11516g00003.1	sp|B1WUI3|ATPG_CYAA5	*-**	ATP synthase gamma chain	IPR000131 (ATPase, F1 complex, gamma subunit), IPR023633 (ATPase, F1 complex, gamma subunit domain)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf05855g06010.1	sp|B2S9C2|DNAJ_BRUA1	*-*-	Chaperone protein DnaJ	IPR008971 (HSP40/DnaJ peptide-binding)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf02830g01001.1	sp|Q9M8S8|VTC4_ARATH	****	Inositol-phosphate phosphatase	IPR000760 (Inositol monophosphatase)	GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf03461g05025.1	sp|Q31PU2|MINE_SYNE7	--**	Cell division topological specificity factor	IPR005527 (Septum formation topological specificity factor MinE)	GO:0032955 (regulation of barrier septum assembly), GO:0051301 (cell division)
Niben101Scf08195g04012.1			Unknown protein	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01943g03004.1	gb|AEL30359.1|	*-*-	RNA-directed DNA polymerase [Arachis hypogaea]	IPR025558 (Domain of unknown function DUF4283), IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf05011g01006.1	sp|Q7XBQ9|RGA2_SOLBU	--*-	Disease resistance protein RGA2		
Niben101Scf02558g00030.1	sp|Q9S7P5|SPL12_ARATH	****	Squamosa promoter-binding-like protein 12	IPR004333 (Transcription factor, SBP-box), IPR020683 (Ankyrin repeat-containing domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf02644g00007.1	AT5G26780.3	*-**	serine hydroxymethyltransferase 2 LENGTH=533	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf06958g01003.1	sp|Q4QJW5|DNAJ_HAEI8	***-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf01322g00012.1	sp|B6TCE8|NNJA8_MAIZE	--*-	Ninja-family protein 8	IPR012463 (Ninja)	
Niben101Scf01656g00015.1	AT3G59700.1	*-**	lectin-receptor kinase LENGTH=661	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf09445g00001.1			Unknown protein		
Niben101Scf08805g00009.1	sp|Q8TRC4|EF1A_METAC	***-	Elongation factor 1-alpha	IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf03414g02003.1	sp|P46032|PTR2_ARATH	***-	Protein NRT1/ PTR FAMILY 8.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01866g02009.1	sp|Q9SSR4|PPR77_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01124g01003.1	sp|A7HZW1|NUON_CAMHC	--*-	NADH-quinone oxidoreductase subunit N		
Niben101Scf16150g00003.1			Unknown protein		
Niben101Scf08168g02008.1	sp|Q31RR1|TATA_SYNE7	--*-	Sec-independent protein translocase protein TatA	IPR003369 (Sec-independent protein translocase protein TatA/B/E)	GO:0008565 (protein transporter activity), GO:0015031 (protein transport)
Niben101Scf15824g00017.1			Unknown protein		
Niben101Scf00304g02003.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00246g05003.1	sp|Q10LG8|TLP6_ORYSJ	***-	Tubby-like F-box protein 6	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf00853g01007.1	sp|P91924|ARF_DUGJA	***-	ADP-ribosylation factor	IPR003579 (Small GTPase superfamily, Rab type), IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf05407g03004.1			Unknown protein		
Niben101Scf01239g03020.1	emb|CDX86971.1|	*-*-	BnaC03g52410D [Brassica napus]		
Niben101Scf02849g02012.1	AT3G19080.1	*-*-	SWIB complex BAF60b domain-containing protein LENGTH=462	IPR003121 (SWIB/MDM2 domain), IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding), GO:0005515 (protein binding)
Niben101Scf02471g05010.1	sp|Q6IQ97|RBM41_DANRE	*-**	RNA-binding protein 4.1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf11288g00003.1	AT2G38940.1	*-*-	phosphate transporter 1;4 LENGTH=534	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf00879g03005.1	sp|Q8S8I4|EPF1_ARATH	***-	Protein EPIDERMAL PATTERNING FACTOR 1		
Niben101Scf00488g04007.1	sp|Q8L7F9|B3GTF_ARATH	****	Beta-1,3-galactosyltransferase 15	IPR002659 (Glycosyl transferase, family 31), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane), GO:0030246 (carbohydrate binding)
Niben101Scf08039g00019.1	sp|Q5K4R0|MAD47_ORYSJ	*-*-	MADS-box transcription factor 47	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03422g04012.1	AT4G11560.1	*-*-	bromo-adjacent homology (BAH) domain-containing protein LENGTH=587	IPR001025 (Bromo adjacent homology (BAH) domain)	GO:0003682 (chromatin binding)
Niben101Scf05710g03023.1			Unknown protein		
Niben101Scf03886g04003.1	sp|Q9FED2|HA22E_ARATH	--*-	HVA22-like protein e		
Niben101Scf02351g05002.1	AT2G43410.2	*-**	RNA binding LENGTH=901	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR012921 (Spen paralogue and orthologue SPOC, C-terminal)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01035g05007.1			Unknown protein		
Niben101Scf01341g03007.1			Unknown protein		
Niben101Scf29888g00015.1	sp|Q3ZCG2|MPC1_BOVIN	--**	Mitochondrial pyruvate carrier 1	IPR005336 (Mitochondrial pyruvate carrier)	GO:0005743 (mitochondrial inner membrane), GO:0006850 (mitochondrial pyruvate transport)
Niben101Scf00344g04010.1	sp|P56213|ALR_MOUSE	*-**	FAD-linked sulfhydryl oxidase ALR	IPR017905 (ERV/ALR sulfhydryl oxidase domain)	GO:0016972 (thiol oxidase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00347g00017.1	AT4G28390.1	***-	ADP/ATP carrier 3 LENGTH=379	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf04582g01004.1	sp|Q9H0Z9|RBM38_HUMAN	*-**	RNA-binding protein 38	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02194g00008.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10774g02004.1	sp|Q5F477|CB043_CHICK	***-	UPF0554 protein C2orf43 homolog	IPR019363 (Protein of unknown function DUF2305), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf16451g00004.1	AT1G64300.1	****	Protein kinase family protein LENGTH=717	IPR010632 (Domain of unknown function DUF1221), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf14958g00036.1	sp|Q9CXR1|DHRS7_MOUSE	****	Dehydrogenase/reductase SDR family member 7	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf04181g00034.1	emb|CDX73753.1|	***-	BnaC08g22500D [Brassica napus]		
Niben101Scf00774g01034.1	sp|P91124|RIC19_CAEEL	--*-	Resistance to inhibitors of cholinesterase protein 19	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf12197g03020.1	sp|Q8VCY6|UTP6_MOUSE	****	U3 small nucleolar RNA-associated protein 6 homolog	IPR003107 (HAT (Half-A-TPR) repeat), IPR013949 (U3 small nucleolar RNA-associated protein 6)	GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Scf07907g00030.1	AT1G61870.1	***-	pentatricopeptide repeat 336 LENGTH=408	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05340g00012.1	gb|KEH23634.1|	****	S-adenosylmethionine-dependent methyltransferase [Medicago truncatula]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf11562g01003.1	ref|YP_009020063.1|	*-*-	rib S12 [Prunus mume]		
Niben101Scf04699g01007.1			Unknown protein		
Niben101Scf09156g00020.1	AT1G71696.2	*-**	carboxypeptidase D, putative LENGTH=491	IPR015567 (Peptidase M14B, caboxypeptidase D)	GO:0004181 (metallocarboxypeptidase activity), GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding)
Niben101Scf01486g03020.1	sp|Q9SYM1|MSL6_ARATH	***-	Mechanosensitive ion channel protein 6	IPR006685 (Mechanosensitive ion channel MscS)	GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf06064g01004.1	sp|P10754|ZFP13_MOUSE	--*-	Zinc finger protein 13	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR019786 (Zinc finger, PHD-type, conserved site)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf10678g00022.1	sp|Q9M907|PP217_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00428g10006.1	sp|O80338|EF101_ARATH	****	Ethylene-responsive transcription factor 2	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00200g00018.1	emb|CDY52822.1|	--*-	BnaCnng23560D [Brassica napus]		
Niben101Scf07034g04008.1	sp|Q70E96|AL3F1_ARATH	****	Aldehyde dehydrogenase family 3 member F1	IPR012394 (Aldehyde dehydrogenase NAD(P)-dependent), IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0004030 (aldehyde dehydrogenase [NAD(P)+] activity), GO:0006081 (cellular aldehyde metabolic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf03913g01019.1	sp|Q0IQU1|LAC22_ORYSJ	*-*-	Laccase-22	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf16508g00001.1	sp|Q5HL01|SAT_STAEQ	****	Sulfate adenylyltransferase	IPR002650 (Sulphate adenylyltransferase), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR015947 (PUA-like domain)	GO:0000103 (sulfate assimilation), GO:0004781 (sulfate adenylyltransferase (ATP) activity)
Niben101Scf00646g05015.1	sp|O04504|PPR27_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03759g01002.1	AT3G56760.1	****	Protein kinase superfamily protein LENGTH=577	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03565g03005.1	sp|Q6GFT0|ARSB_STAAR	--**	Arsenical pump membrane protein	IPR004680 (Citrate transporter-like domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf10232g02005.1	AT1G02400.1	***-	gibberellin 2-oxidase 6 LENGTH=329	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02761g02007.1	sp|A6LG92|MUTS_PARD8	*-**	DNA mismatch repair protein MutS	IPR000432 (DNA mismatch repair protein MutS, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf03284g01003.1	sp|Q9S8M0|LECT_SOLTU	--**	Chitin-binding lectin 1	IPR001002 (Chitin-binding, type 1)	GO:0008061 (chitin binding)
Niben101Scf04660g00009.1	sp|Q9SW80|BLH2_ARATH	*-*-	BEL1-like homeodomain protein 2	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00271g07022.1	sp|Q6NXD2|CHM2B_DANRE	***-	Charged multivesicular body protein 2b	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf02474g03002.1	sp|Q9SSQ4|FRS6_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 6	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf00372g01007.1	sp|Q9ASZ8|PPR37_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08776g02027.1	AT3G18210.1	***-	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=394	IPR006620 (Prolyl 4-hydroxylase, alpha subunit)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09592g00001.1	gb|AES64121.2|	-**-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf02605g09007.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021820 (S-locus receptor kinase, C-terminal)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf09867g01001.1	sp|Q6NU91|NOC4B_XENLA	***-	Nucleolar complex protein 4 homolog B	IPR005612 (CCAAT-binding factor)	
Niben101Scf00282g02006.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08899g00009.1	sp|Q9LJR7|XTH3_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 3	IPR010713 (Xyloglucan endo-transglycosylase, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf02392g00003.1	AT5G64420.1	*-*-	DNA polymerase V family LENGTH=1306		
Niben101Scf00270g05015.1			Unknown protein		
Niben101Scf00072g00001.1	gb|ABF96025.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR009056 (Cytochrome c-like domain), IPR025322 (Protein of unknown function DUF4228, plant)	GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf02497g08013.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05282g00001.1	sp|O04504|PPR27_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01718g00006.1	gb|KGG36516.1|	*-**	Nickel transporter UreH [Prochlorococcus sp. MIT 0703]	IPR011541 (Nickel/cobalt transporter, high-affinity)	GO:0015099 (nickel cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0035444 (nickel cation transmembrane transport), GO:0046872 (metal ion binding)
Niben101Scf17579g00002.1	sp|Q5ZUH9|MSBA_LEGPH	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf02803g03009.1	AT1G15370.1	***-	SNARE-like superfamily protein LENGTH=147		
Niben101Scf26939g00001.1	sp|Q16828|DUS6_HUMAN	--**	Dual specificity protein phosphatase 6	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf02227g06003.1	sp|Q9SVP7|PP307_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04993g00009.1	AT4G17240.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: Archae - 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). LENGTH=343		
Niben101Scf19155g00005.1	sp|Q940T9|COL4_ARATH	****	Zinc finger protein CONSTANS-LIKE 4	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf00259g01002.1	AT5G04160.1	***-	Nucleotide-sugar transporter family protein LENGTH=309	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf03337g03016.1	sp|A2VDZ9|VAPB_BOVIN	****	Vesicle-associated membrane protein-associated protein B	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf06686g01023.1	sp|F4HQX1|JAL3_ARATH	***-	Jacalin-related lectin 3	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf00157g02014.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03208g05001.1	sp|O82302|P2C29_ARATH	*-*-	Protein phosphatase 2C 29	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf06556g00002.1	sp|Q3MHR3|DYL2_BOVIN	***-	Dynein light chain 2, cytoplasmic	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Scf05147g01006.1	sp|Q2YT48|DNAJ_STAAB	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR015399 (Domain of unknown function DUF1977, DnaJ-like)	
Niben101Scf06584g00004.1	sp|Q8LB81|GDL79_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02693g02006.1	AT1G80270.1	***-	PENTATRICOPEPTIDE REPEAT 596 LENGTH=596	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf16738g00008.1	sp|Q1AW65|RRF_RUBXD	***-	Ribosome-recycling factor	IPR002661 (Ribosome recycling factor), IPR023584 (Ribosome recycling factor domain)	GO:0006412 (translation)
Niben101Scf00361g04019.1	sp|Q39117|TGT2_ARATH	*-*-	Trihelix transcription factor GT-2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf03085g04008.1	sp|E9QAU8|RN165_MOUSE	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07253g02020.1	sp|Q21988|AMX1_CAEEL	*-*-	Amine oxidase family member 1	IPR002937 (Amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01623g12015.1	AT2G25920.1	*-*-	BEST Arabidopsis thaliana protein match is: 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein . LENGTH=280		
Niben101Scf10676g02004.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf06277g04013.1	sp|A5CF34|RL25_ORITB	***-	50S ribosomal protein L25	IPR011035 (Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain), IPR029751 (Ribosomal protein L25)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0008097 (5S rRNA binding)
Niben101Scf03973g00006.1	sp|Q5ZM20|RMI2_CHICK	-**-	RecQ-mediated genome instability protein 2	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf03450g00016.1	sp|P0A5J7|MDH_MYCBO	****	Malate dehydrogenase	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf07250g03021.1	AT4G35980.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=87		
Niben101Scf03039g03021.1	sp|Q06450|ATP5E_IPOBA	****	ATP synthase subunit epsilon, mitochondrial	IPR006721 (ATPase, F1 complex, epsilon  subunit, mitochondrial)	GO:0000275 (mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)), GO:0015986 (ATP synthesis coupled proton transport), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf13167g01014.1	AT3G26950.1	***-	unknown protein; Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=548		
Niben101Scf00780g03018.1			Unknown protein		
Niben101Scf05644g01002.1	sp|P46270|QCR9_SOLTU	****	Cytochrome b-c1 complex subunit 9	IPR008027 (Cytochrome b-c1 complex subunit 9)	GO:0005743 (mitochondrial inner membrane), GO:0005750 (mitochondrial respiratory chain complex III), GO:0006122 (mitochondrial electron transport, ubiquinol to cytochrome c)
Niben101Scf00611g11025.1	sp|A4QVP2|IF4A_MAGO7	****	ATP-dependent RNA helicase eIF4A	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01576g00014.1	ref|WP_010111423.1|	*-*-	kinase [Acinetobacter sp. P8-3-8]		
Niben101Scf02480g02012.1	sp|Q4ZXH2|GCSP_PSEU2	****	Glycine dehydrogenase (decarboxylating)	IPR020581 (Glycine cleavage system P protein)	GO:0003824 (catalytic activity), GO:0004375 (glycine dehydrogenase (decarboxylating) activity), GO:0006544 (glycine metabolic process), GO:0006546 (glycine catabolic process), GO:0030170 (pyridoxal phosphate binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01362g02001.1	sp|Q9LJX1|PRE5_ARATH	***-	Transcription factor PRE5	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf27793g02008.1	sp|Q96NW7|LRRC7_HUMAN	*-*-	Leucine-rich repeat-containing protein 7	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf07162g05028.1	sp|Q8GY42|NAC25_ARATH	*-**	NAC transcription factor 25	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06613g05005.1	sp|Q9AR19|GCN5_ARATH	*-*-	Histone acetyltransferase GCN5		
Niben101Scf04104g06004.1	sp|P85206|NLTP2_ACTDE	****	Non-specific lipid-transfer protein 2	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf07778g03007.1	gb|AES95297.2|	***-	F-box protein interaction domain protein [Medicago truncatula]	IPR013187 (F-box associated domain, type 3)	
Niben101Scf00371g03003.1	AT3G15430.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=488	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf23876g00004.1	AT1G64830.1	***-	Eukaryotic aspartyl protease family protein LENGTH=431	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05712g03021.1	AT1G04220.1	***-	3-ketoacyl-CoA synthase 2 LENGTH=528	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf07614g00012.1	sp|B6ETT4|SYT2_ARATH	***-	Synaptotagmin-2	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf06369g00003.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf14390g00006.1			Unknown protein		
Niben101Scf06019g01026.1	emb|CDX88419.1|	***-	BnaC06g38630D [Brassica napus]		
Niben101Scf00074g00001.1			Unknown protein		
Niben101Scf01866g06002.1	sp|B1MW13|RL4_LEUCK	*-*-	50S ribosomal protein L4	IPR002136 (Ribosomal protein L4/L1e), IPR023574 (Ribosomal protein L4 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02362g01012.1	ref|XP_005710814.1|	*-**	ATP dependant DNA helicase [Chondrus crispus] emb|CDF40520.1| ATP dependant DNA helicase [Chondrus crispus]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf12320g00005.1	sp|Q9FK93|PP406_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf00905g03012.1	AT2G43840.2	***-	UDP-glycosyltransferase 74 F1 LENGTH=449	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05720g05002.1	AT2G13290.1	*-**	beta-1,4-N-acetylglucosaminyltransferase family protein LENGTH=361	IPR006813 (Glycosyl transferase, family 17)	GO:0003830 (beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity), GO:0006487 (protein N-linked glycosylation), GO:0016020 (membrane)
Niben101Scf10353g00011.1	sp|A2WT95|PLA1_ORYSI	***-	Phospholipase A1-II 1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf08621g03002.1	sp|P19244|HSP41_PEA	***-	22.7 kDa class IV heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf00180g11027.1	sp|Q13435|SF3B2_HUMAN	***-	Splicing factor 3B subunit 2	IPR006568 (PSP, proline-rich), IPR007180 (Domain of unknown function DUF382)	GO:0005634 (nucleus)
Niben101Scf07709g00004.1	sp|P74232|PUR2_SYNY3	****	Phosphoribosylamine--glycine ligase	IPR000115 (Phosphoribosylglycinamide synthetase), IPR016185 (Pre-ATP-grasp domain)	GO:0003824 (catalytic activity), GO:0004637 (phosphoribosylamine-glycine ligase activity), GO:0005524 (ATP binding), GO:0009113 (purine nucleobase biosynthetic process), GO:0046872 (metal ion binding)
Niben101Scf09989g01001.1	ref|XP_002532637.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF29740.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01314g01011.1	ref|XP_003626920.1|	***-	GRF zinc finger containing protein [Medicago truncatula]		
Niben101Scf03710g01003.1	sp|Q2TBG8|UCHL3_BOVIN	****	Ubiquitin carboxyl-terminal hydrolase isozyme L3	IPR001578 (Peptidase C12, ubiquitin carboxyl-terminal hydrolase)	GO:0004843 (ubiquitin-specific protease activity), GO:0005622 (intracellular), GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf06248g01009.1			Unknown protein		
Niben101Scf02929g01069.1	sp|P30962|CCMC_BRADU	*-**	Heme exporter protein C	IPR002541 (Cytochrome c assembly protein), IPR003557 (Cytochrome c-type biogenesis protein CcmC)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Ctg14509g00003.1	gb|AFW05291.1|	*-*-	CDO504, partial [Poa phillipsiana]	IPR006696 (Protein of unknown function DUF423)	
Niben101Scf05776g01038.1	emb|CCH50966.1|	--*-	T4.5 [Malus x robusta]		
Niben101Scf00320g02004.1			Unknown protein		
Niben101Scf03009g05004.1	sp|P42851|IMDH_PYRFU	*-*-	Inosine-5'-monophosphate dehydrogenase	IPR000644 (CBS domain)	
Niben101Scf03337g00001.1	sp|A2X7Q3|YAB4_ORYSI	***-	Protein YABBY 4	IPR006780 (YABBY protein)	
Niben101Scf03185g01019.1	sp|Q9SH26|PP102_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03099g01010.1	sp|A0PZN1|SYT_CLONN	****	Threonine--tRNA ligase	IPR002320 (Threonine-tRNA ligase, class IIa), IPR012675 (Beta-grasp domain)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004829 (threonine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006435 (threonyl-tRNA aminoacylation), GO:0016876 (ligase activity, forming aminoacyl-tRNA and related compounds), GO:0043039 (tRNA aminoacylation)
Niben101Scf01279g00008.1	sp|Q9SB51|UBP16_ARATH	*-**	Ubiquitin carboxyl-terminal hydrolase 16	IPR001607 (Zinc finger, UBP-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0008270 (zinc ion binding), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf01718g09029.1	sp|Q9SDA8|FBL10_ARATH	***-	F-box/LRR-repeat protein 10	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf12609g01006.1	sp|Q9LDE4|ERF83_ARATH	--**	Ethylene-responsive transcription factor 7	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09021g00001.1	AT1G01920.1	***-	SET domain-containing protein LENGTH=572		
Niben101Scf02093g05027.1	ref|WP_031452301.1|	*-*-	alpha/beta hydrolase [Desulfobacula sp. TS]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf08315g00008.1	sp|Q68S06|PSAA_PANGI	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf07788g03005.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04053g00003.1			Unknown protein		
Niben101Scf00072g04006.1	sp|Q5EB97|ZCH10_RAT	*-*-	Zinc finger CCHC domain-containing protein 10		
Niben101Scf04371g02004.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf00503g02005.1	emb|CDY11374.1|	*-*-	BnaA09g39400D [Brassica napus]	IPR021480 (Protein of unknown function DUF3133)	
Niben101Scf01603g00006.1	ref|XP_007045192.1|	--*-	Gag-pro-like protein [Theobroma cacao] gb|EOY01024.1| Gag-pro-like protein [Theobroma cacao]		
Niben101Scf38755g00002.1	sp|Q948T6|LGUL_ORYSJ	****	Lactoylglutathione lyase	IPR004361 (Glyoxalase I), IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	GO:0004462 (lactoylglutathione lyase activity), GO:0046872 (metal ion binding)
Niben101Scf08535g02005.1	sp|Q8L8A6|GRF5_ARATH	*-*-	Growth-regulating factor 5	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf05583g00006.1	sp|Q8PV45|RL22_METMA	****	50S ribosomal protein L22	IPR001063 (Ribosomal protein L22/L17)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf05850g00012.1	AT4G12340.1	***-	copper ion binding LENGTH=170		
Niben101Scf04396g04014.1	ref|NP_188895.1|	****	GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] dbj|BAB01471.1| alanine acetyl transferase-like protein [Arabidopsis thaliana] gb|ABN04781.1| [Arabidopsis thaliana] gb|AEE76653.1| GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf03374g06003.1	sp|Q96AY4|TTC28_HUMAN	*-*-	Tetratricopeptide repeat protein 28	IPR006636 (Heat shock chaperonin-binding), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02714g05001.1	sp|Q6I544|GL52_ORYSJ	***-	Germin-like protein 5-1	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf09559g01005.1			Unknown protein		
Niben101Scf05601g00007.1	sp|Q9SK27|ENL1_ARATH	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf29530g00003.1			Unknown protein		
Niben101Scf09819g00003.1	sp|Q5NLX3|IOJAP_ZYMMO	*-*-	Ribosomal silencing factor RsfS	IPR004394 (Protein Iojap/ribosomal silencing factor RsfS), IPR025656 (Oligomerisation domain)	
Niben101Scf10638g02001.1	sp|Q9XGW1|AGO10_ARATH	***-	Protein argonaute 10	IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf02922g01033.1	sp|Q3B7N1|CHD1L_BOVIN	*-**	Chromodomain-helicase-DNA-binding protein 1-like	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR003615 (HNH nuclease), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0004519 (endonuclease activity), GO:0005524 (ATP binding)
Niben101Scf10524g02005.1	sp|Q3E902|RS212_ARATH	***-	40S ribosomal protein S21-2	IPR001931 (Ribosomal protein S21e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05588g02006.1	AT1G08470.1	****	strictosidine synthase-like 3 LENGTH=390	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf03879g00004.1	ref|XP_007042632.1|	--*-	Basic helix-loop-helix DNA-binding superfamily protein, putative [Theobroma cacao] gb|EOX98463.1| Basic helix-loop-helix DNA-binding superfamily protein, putative [Theobroma cacao]		
Niben101Scf15286g00007.1			Unknown protein		
Niben101Scf00854g02042.1	sp|B4R8N0|RS14_PHEZH	-**-	30S ribosomal protein S14	IPR001209 (Ribosomal protein S14)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05102g05003.1	AT5G35170.1	*-**	adenylate kinase family protein LENGTH=588	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf02310g04028.1	AT1G08470.1	****	strictosidine synthase-like 3 LENGTH=390	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf00308g01001.1	tpg|DAA57837.1|	*-**	TPA: metal ion binding protein [Zea mays]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf01687g06002.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07035g02001.1	emb|CDX93559.1|	***-	BnaA06g04890D [Brassica napus]		
Niben101Scf08533g02009.1	AT1G67660.1	***-	Restriction endonuclease, type II-like superfamily protein LENGTH=355	IPR011335 (Restriction endonuclease  type II-like)	GO:0003677 (DNA binding), GO:0004518 (nuclease activity)
Niben101Scf01752g10011.1	sp|Q08069|RS8_MAIZE	***-	40S ribosomal protein S8	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09801g02005.1	emb|CDY19508.1|	--*-	BnaC09g13950D [Brassica napus]		
Niben101Ctg08087g00001.1	gb|ACF19789.1|	****	NAC transcription factor [Nicotiana tabacum]	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07152g03013.1	sp|Q0IQU1|LAC22_ORYSJ	***-	Laccase-22	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04657g01007.1	ref|XP_003599949.1|	-***	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf11552g04012.1	gb|AGW82763.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia caulescens]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf07527g00007.1	sp|O47669|COX2_CANAU	*-**	Cytochrome c oxidase subunit 2	IPR008972 (Cupredoxin), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0005840 (ribosome), GO:0006412 (translation), GO:0016020 (membrane)
Niben101Scf00854g01023.1			Unknown protein		
Niben101Scf03924g01022.1	gb|AAU95271.1|	*-*-	R1 [Solanum tuberosum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf01991g02023.1	sp|F4IQJ2|ELP5_ARATH	***-	Elongator complex protein 5	IPR019519 (Elongator complex protein 5)	GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06158g02006.1	sp|Q9C7N4|GDL15_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf08564g04001.1	sp|B2K065|HEM3_YERPB	***-	Porphobilinogen deaminase	IPR000860 (Tetrapyrrole biosynthesis, hydroxymethylbilane synthase)	GO:0004418 (hydroxymethylbilane synthase activity), GO:0018160 (peptidyl-pyrromethane cofactor linkage), GO:0033014 (tetrapyrrole biosynthetic process)
Niben101Scf04793g01005.1	sp|O95433|AHSA1_HUMAN	****	Activator of 90 kDa heat shock protein ATPase homolog 1	IPR013538 (Activator of Hsp90 ATPase homologue 1-like), IPR015310 (Activator of Hsp90 ATPase, N-terminal), IPR023393 (START-like domain)	GO:0001671 (ATPase activator activity), GO:0006950 (response to stress), GO:0051087 (chaperone binding)
Niben101Scf00448g00002.1	gb|KEH18386.1|	*-**	myb-like DNA-binding domain protein [Medicago truncatula]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf03351g04004.1	ref|WP_026797076.1|	***-	MULTISPECIES: hypothetical protein [Planktothrix]		
Niben101Scf00981g04004.1	sp|Q8LA53|MBD2_ARATH	****	Methyl-CpG-binding domain-containing protein 2	IPR011124 (Zinc finger, CW-type), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf05922g01002.1	AT5G64010.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=236		
Niben101Scf06030g00002.1	sp|Q8S3D1|BH068_ARATH	***-	Transcription factor bHLH68	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf13916g01022.1	dbj|BAD35335.1|	*-*-	loricrin-like [Oryza sativa Japonica Group]		
Niben101Scf04170g01007.1	AT1G01225.1	***-	NC domain-containing protein-related LENGTH=260	IPR007053 (LRAT-like domain)	
Niben101Scf00338g06015.1	ref|XP_002511155.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF51757.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01664g02013.1	sp|Q96QK1|VPS35_HUMAN	--*-	Vacuolar protein sorting-associated protein 35	IPR005378 (Vacuolar protein sorting-associated protein 35, Vps35)	GO:0015031 (protein transport), GO:0030904 (retromer complex), GO:0042147 (retrograde transport, endosome to Golgi)
Niben101Scf01430g01004.1	sp|Q9LUQ6|RL192_ARATH	***-	60S ribosomal protein L19-2	IPR000196 (Ribosomal protein L19/L19e domain), IPR023638 (Ribosomal protein L19/L19e conserved site), IPR027547 (Ribosomal protein L19/L19e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01676g00005.1	sp|Q7U3T9|RL7_SYNPX	*-*-	50S ribosomal protein L7/L12	IPR000206 (Ribosomal protein L7/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04608g04001.1	sp|Q929G7|CLPB_LISIN	--*-	Chaperone protein ClpB	IPR004176 (Clp, N-terminal), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0019538 (protein metabolic process)
Niben101Scf02080g03006.1	sp|Q9FZ70|FDL1_ARATH	--*-	F-box/FBD/LRR-repeat protein		
Niben101Scf07722g00008.1	sp|Q7XJN6|PP197_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf11078g01010.1	sp|Q9U793|PSA2_TRYBB	*-**	Proteasome subunit alpha type-2	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf12593g00002.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf04140g00003.1	emb|CDY51989.1|	***-	BnaC03g75650D [Brassica napus]		
Niben101Scf30681g00004.1	AT2G03050.1	****	Mitochondrial transcription termination factor family protein LENGTH=283	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00783g06008.1	sp|Q6GIU7|NORA_STAAR	--*-	Quinolone resistance protein NorA	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf05298g00001.1	AT3G54090.1	***-	fructokinase-like 1 LENGTH=471	IPR029056 (Ribokinase-like)	GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf06750g00014.1	sp|Q9CAR3|KINGL_ARATH	***-	SNF1-related protein kinase regulatory subunit gamma-1-like	IPR000644 (CBS domain)	
Niben101Scf11814g00005.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02348g06005.1	AT4G31590.1	***-	Cellulose-synthase-like C5 LENGTH=692	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf07576g04017.1	AT2G46070.1	****	mitogen-activated protein kinase 12 LENGTH=372	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06650g03002.1	gb|AES82595.2|	***-	acetyltransferase (GNAT) domain protein [Medicago truncatula]	IPR016181 (Acyl-CoA N-acyltransferase)	
Niben101Scf13335g00006.1	sp|Q61011|GBB3_MOUSE	--**	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04907g04001.1	ref|WP_013181175.1|	****	aromatic amino acid permease [Waddlia chondrophila] ref|YP_003708453.1| aromatic amino acid permease [Waddlia chondrophila WSU 86-1044] gb|ADI37447.1| putative aromatic amino acid permease [Waddlia chondrophila WSU 86-1044] emb|CCB90871.1| tyrosine-specific transport protein [Waddlia chondrophila 2032/99]	IPR018227 (Tryptophan/tyrosine permease)	GO:0003333 (amino acid transmembrane transport)
Niben101Scf04384g02014.1	sp|C7FF04|PPO3_AGABI	--**	Polyphenol oxidase 3	IPR008922 (Uncharacterised domain, di-copper centre)	GO:0004097 (catechol oxidase activity), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07188g00012.1			Unknown protein		
Niben101Scf22195g00015.1	AT1G05420.1	*-*-	ovate family protein 12 LENGTH=226	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf01005g02012.1	AT5G64330.1	***-	Phototropic-responsive NPH3 family protein LENGTH=746	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain), IPR029959 (Root phototropism protein 3-like)	GO:0016567 (protein ubiquitination)
Niben101Scf05080g01016.1	AT1G04970.1	****	lipid-binding serum glycoprotein family protein LENGTH=488	IPR017943 (Bactericidal permeability-increasing protein, alpha/beta domain)	GO:0008289 (lipid binding)
Niben101Scf04021g07006.1	sp|Q8LG03|FB345_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf07424g02014.1	ref|XP_002530262.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF32132.1| conserved hypothetical protein [Ricinus communis]	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf09353g03004.1	gb|KGN65992.1|	*-*-	GRIP and coiled-coil domain-containing protein [Cucumis sativus]		
Niben101Scf03103g00017.1	sp|P98205|ALA2_ARATH	*-**	Phospholipid-transporting ATPase 2	IPR006539 (P-type ATPase, subfamily IV)	GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane)
Niben101Scf10627g02004.1	ref|WP_019475137.1|	*-**	membrane protein [Prochlorococcus sp. W2]	IPR003425 (Uncharacterised protein family Ycf19)	GO:0016020 (membrane)
Niben101Scf01862g02013.1	sp|A1CFB3|ATG26_ASPCL	*-*-	Sterol 3-beta-glucosyltransferase	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00854g04012.1	gb|AGZ90705.1|	***-	maturase, partial (mitochondrion) [Forsskaolea angustifolia]	IPR000477 (Reverse transcriptase domain)	
Niben101Scf21069g00002.1	sp|P98204|ALA1_ARATH	*-**	Phospholipid-transporting ATPase 1	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf07116g00002.1	AT4G32520.1	****	serine hydroxymethyltransferase 3 LENGTH=529	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00415g03001.1	sp|Q84MB3|ACCH1_ARATH	*-*-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf00206g00009.1	ref|NP_001172419.1|	--*-	OsI_02421 [Oryza sativa Indica Group] dbj|BAH91149.1| [Oryza sativa Japonica Group]		
Niben101Scf03764g00007.1	AT1G75590.1	***-	SAUR-like auxin-responsive protein family LENGTH=154	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02714g07007.1	AT5G26670.1	***-	Pectinacetylesterase family protein LENGTH=416	IPR004963 (Protein notum homologue)	
Niben101Scf00320g02001.1	AT4G09900.1	***-	methyl esterase 12 LENGTH=349	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02247g00023.1	ref|XP_002530796.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF31597.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05516g04022.1	AT1G03980.1	*-**	phytochelatin synthase 2 LENGTH=452	IPR007719 (Phytochelatin synthase)	GO:0010038 (response to metal ion), GO:0016756 (glutathione gamma-glutamylcysteinyltransferase activity), GO:0046872 (metal ion binding), GO:0046938 (phytochelatin biosynthetic process)
Niben101Scf02379g00003.1	emb|CDY19913.1|	***-	BnaC09g31790D [Brassica napus]		
Niben101Scf02011g04004.1	AT5G24240.1	***-	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein LENGTH=574	IPR000403 (Phosphatidylinositol 3-/4-kinase, catalytic domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00714g00006.1	sp|E0CYC6|NAT8B_MOUSE	--**	N-acetyltransferase 8B	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf05272g03013.1	sp|Q9LRW1|LBD22_ARATH	*-*-	LOB domain-containing protein 22	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf03929g05001.1	AT4G21480.1	*-**	sugar transporter protein 12 LENGTH=502	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04489g00013.1	AT1G79900.1	*-*-	Mitochondrial substrate carrier family protein LENGTH=296	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf02972g01006.1	sp|Q9T0A0|LACS4_ARATH	***-	Long chain acyl-CoA synthetase 4	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04653g08006.1	sp|Q9SB67|NRT32_ARATH	***-	High-affinity nitrate transporter 3.2		
Niben101Scf06750g00010.1	sp|Q8VY01|SCP46_ARATH	*-**	Serine carboxypeptidase-like 46	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01768g02016.1	ref|XP_002521255.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF41111.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09436g05004.1	sp|Q55DL2|MET18_DICDI	*-*-	Histidine protein methyltransferase 1 homolog	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01847g02018.1	gb|ABB46758.1|	*-*-	proline-rich protein, putative, expressed [Oryza sativa Japonica Group]	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf00160g10028.1	sp|Q54XK2|SC61A_DICDI	****	Protein transport protein Sec61 subunit alpha	IPR002208 (SecY/SEC61-alpha family), IPR023201 (SecY subunit domain)	GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02929g04013.1	ref|XP_002529236.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF33149.1| conserved hypothetical protein [Ricinus communis]		
Niben101Ctg12264g00001.1	gb|EMT23266.1|	--*-	Eukaryotic translation initiation factor 2 subunit alpha [Aegilops tauschii]	IPR024055 (Translation initiation factor 2, alpha subunit, C-terminal)	
Niben101Scf01825g02014.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf11709g01032.1	emb|CDX98744.1|	***-	BnaA03g45290D [Brassica napus]		
Niben101Scf09044g01003.1	sp|Q03198|IPIA_TOBAC	****	Proteinase inhibitor I-A	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding)
Niben101Scf04675g00001.1	sp|P27898|MYBP_MAIZE	*-*-	Myb-related protein P	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03009g05006.1	gb|AFW62990.1|	--*-	leucine-rich repeat (LRR) family protein [Zea mays]		
Niben101Scf05764g04016.1	sp|Q1GBR1|RSMA_LACDA	****	Ribosomal RNA small subunit methyltransferase A	IPR001737 (Ribosomal RNA adenine methyltransferase KsgA/Erm), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0000154 (rRNA modification), GO:0000179 (rRNA (adenine-N6,N6-)-dimethyltransferase activity), GO:0006364 (rRNA processing), GO:0008649 (rRNA methyltransferase activity)
Niben101Ctg14950g00001.1			Unknown protein		
Niben101Scf05665g00012.1	AT3G10560.1	***-	Cytochrome P450 superfamily protein LENGTH=514	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02985g00007.1	ref|NP_191672.1|	****	alpha-1,4-galacturon [Arabidopsis thaliana] emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gb|AHL38722.1| glycosyltransferase, partial [Arabidopsis thaliana]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf24439g00006.1	AT2G39420.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=317	IPR022742 (Putative lysophospholipase), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00151g02002.1	AT3G03320.1	***-	RNA-binding ASCH domain protein LENGTH=244	IPR015947 (PUA-like domain)	
Niben101Scf00481g01010.1	sp|Q8IFW4|THIOT_DROME	*-*-	Thioredoxin-T	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf04053g00004.1	gb|KEH44010.1|	***-	MADS-box transcription factor family protein [Medicago truncatula]		
Niben101Scf03455g02014.1	gb|AES90685.2|	***-	plant/F17J16-140 protein [Medicago truncatula]	IPR009457 (Domain of unknown function DUF1084)	
Niben101Scf05711g04009.1	sp|Q8T135|KIF5_DICDI	*-**	Kinesin-related protein 5	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf13594g03006.1	ref|XP_002510293.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF52480.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf06369g00005.1	gb|AAU95633.1|	***-	R1 [Solanum tuberosum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf03275g00021.1	sp|P29162|ASOL_TOBAC	***-	L-ascorbate oxidase homolog	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05799g02010.1	sp|Q40778|C74A2_PARAR	***-	Allene oxide synthase	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00783g06005.1	dbj|BAD26399.1|	*-**	membrane transport protein-like [Oryza sativa Japonica Group]	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf07201g01009.1	sp|B3R057|FTSH1_PHYMT	*-**	ATP-dependent zinc metalloprotease FtsH 1	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf07182g04010.1	sp|Q6ABS5|FTHS_PROAC	****	Formate--tetrahydrofolate ligase	IPR000559 (Formate-tetrahydrofolate ligase, FTHFS), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004329 (formate-tetrahydrofolate ligase activity), GO:0005524 (ATP binding), GO:0009396 (folic acid-containing compound biosynthetic process)
Niben101Scf13973g01008.1	sp|Q8LA16|ALFL7_ARATH	*-*-	PHD finger protein ALFIN-LIKE 7	IPR021998 (Alfin)	GO:0006355 (regulation of transcription, DNA-templated), GO:0042393 (histone binding)
Niben101Scf00627g03005.1	sp|A4W9T2|MDTK_ENT38	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02425g00020.1	sp|Q32LS6|ABHDD_DANRE	***-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf18057g00002.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf00472g08005.1	AT5G20900.1	***-	jasmonate-zim-domain protein 12 LENGTH=187	IPR010399 (Tify), IPR018467 (CO/COL/TOC1, conserved site)	
Niben101Scf01517g00004.1	ref|NP_001045280.1|	***-	product [Oryza sativa Japonica Group]	IPR022227 (Protein of unknown function DUF3754)	
Niben101Scf07206g01006.1	sp|O81001|GRF1_ARATH	*-*-	Growth-regulating factor 1		
Niben101Scf01752g10014.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR006886 (DNA-directed RNA polymerase III subunit Rpc5), IPR008543 (Uncharacterised protein family Ycf2)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0009507 (chloroplast)
Niben101Scf00990g02020.1	sp|A4K2Y1|STK4_CHLAE	*-**	Serine/threonine-protein kinase 4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05588g11006.1	sp|Q8S8W5|CEMA_ATRBE	*-**	Chloroplast envelope membrane protein	IPR004282 (Chloroplast envelope membrane protein, CemA)	GO:0016021 (integral component of membrane)
Niben101Scf09764g01001.1			Unknown protein		
Niben101Scf05135g06001.1	sp|O80341|EF102_ARATH	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00781g06027.1	ref|XP_002532165.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF30218.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03644g02006.1	sp|Q9FGN8|DYAD_ARATH	*-*-	Protein DYAD		
Niben101Scf06590g01004.1	ref|XP_003606565.1|	--*-	Zinc finger protein CONSTANS-like protein [Medicago truncatula] gb|AES88762.1| CCT motif protein [Medicago truncatula] gb|KEH30079.1| CCT motif protein [Medicago truncatula]		
Niben101Scf12431g00009.1	sp|Q94B74|NUDT2_ARATH	****	Nudix hydrolase 2	IPR003293 (Nudix hydrolase 6-like)	GO:0016787 (hydrolase activity)
Niben101Scf01273g00002.1	AT5G08570.1	****	Pyruvate kinase family protein LENGTH=510	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf00739g01006.1	AT3G25910.1	***-	Protein of unknown function (DUF1644) LENGTH=372	IPR012866 (Protein of unknown function DUF1644), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf04042g00001.1	sp|Q9ASZ8|PPR37_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00011g00004.1	AT3G63070.1	*-*-	Tudor/PWWP/MBT domain-containing protein LENGTH=1347	IPR006569 (CID domain)	
Niben101Scf01927g07006.1	emb|CDX99259.1|	***-	BnaC05g33740D [Brassica napus]		
Niben101Scf22015g02041.1	ref|WP_001384467.1|	*-**	MscS family inner membrane protein YnaI [Escherichia coli] gb|EGX24253.1| mechanosensitive ion channel family protein [Escherichia coli TX1999]	IPR006685 (Mechanosensitive ion channel MscS), IPR010920 (Like-Sm (LSM) domain)	GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03723g03002.1	sp|Q9LNI5|ETC1_ARATH	--*-	MYB-like transcription factor ETC1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04511g01006.1	AT4G03620.1	***-	myosin heavy chain-related LENGTH=342		
Niben101Scf01948g00007.1	sp|Q9LY87|RGLG2_ARATH	***-	E3 ubiquitin-protein ligase RGLG2	IPR002035 (von Willebrand factor, type A), IPR010734 (Copine), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf25562g00007.1	AT3G12920.1	****	SBP (S-ribonuclease binding protein) family protein LENGTH=335	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05304g06010.1	ref|XP_007019055.1|	--*-	Androgen induced inhibitor of proliferation (As3) / pds5, putative isoform 1 [Theobroma cacao] gb|EOY16280.1| Androgen induced inhibitor of proliferation (As3) / pds5, putative isoform 1 [Theobroma cacao]		
Niben101Scf00163g20001.1	sp|Q332Y1|PSBZ_LACSA	--**	Photosystem II reaction center protein Z	IPR002644 (Photosystem II PsbZ, reaction centre)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0015979 (photosynthesis), GO:0042549 (photosystem II stabilization)
Niben101Scf01745g03001.1	sp|Q9FFY9|TRP4_ARATH	****	Telomere repeat-binding protein 4	IPR009057 (Homeodomain-like), IPR029071 (Ubiquitin-related domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf06650g06003.1	AT3G22540.1	***-	Protein of unknown function (DUF1677) LENGTH=110	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf01897g06013.1	sp|Q0I1Y6|PRMA_HISS1	--**	Ribosomal protein L11 methyltransferase	IPR003358 (tRNA (guanine-N-7) methyltransferase, Trmb type), IPR010675 (Bicoid-interacting 3), IPR024160 (Bin3-type S-adenosyl-L-methionine binding domain), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006400 (tRNA modification), GO:0008168 (methyltransferase activity), GO:0008176 (tRNA (guanine-N7-)-methyltransferase activity)
Niben101Scf01852g02002.1	sp|P17742|PPIA_MOUSE	****	Peptidyl-prolyl cis-trans isomerase A	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf05242g00016.1	sp|Q38857|XTH22_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR010713 (Xyloglucan endo-transglycosylase, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf02821g12004.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00432g02007.1	AT3G53520.4	***-	UDP-glucuronic acid decarboxylase 1 LENGTH=458	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf09523g00012.1	sp|Q9SA38|OCT3_ARATH	****	Organic cation/carnitine transporter 3	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02908g03011.1	ref|XP_002521255.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF41111.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05813g03002.1	AT2G15680.1	****	Calcium-binding EF-hand family protein LENGTH=187	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03602g02008.1	ref|NP_565550.1|	****	protein RER1C1 [Arabidopsis thaliana] RecName: Full=Protein RER1C; Short=AtRER1C [Arabidopsis thaliana] dbj|BAA33862.1| AtRER1C [Arabidopsis thaliana] gb|AAL47450.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAB87102.2| putative integral membrane protein [Arabidopsis thaliana] gb|AAM19906.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAM63458.1| putative integral membrane protein [Arabidopsis thaliana] gb|AEC07439.1| protein RER1C1 [Arabidopsis thaliana]	IPR004932 (Retrieval of early ER protein Rer1)	GO:0016021 (integral component of membrane)
Niben101Scf08621g03006.1	sp|P43918|RF2_HAEIN	*-**	Peptide chain release factor 2	IPR000352 (Peptide chain release factor class I/class II), IPR014720 (Double-stranded RNA-binding domain)	GO:0003747 (translation release factor activity), GO:0006415 (translational termination)
Niben101Scf01986g02010.1	sp|P54802|ANAG_HUMAN	***-	Alpha-N-acetylglucosaminidase	IPR007781 (Alpha-N-acetylglucosaminidase), IPR017853 (Glycoside hydrolase superfamily), IPR024732 (Alpha-N-acetylglucosaminidase, C-terminal), IPR024733 (Alpha-N-acetylglucosaminidase, tim-barrel domain)	
Niben101Scf04206g03009.1	sp|A1A5K2|CLA1B_XENLA	*-*-	CLIP-associating protein 1-B	IPR016024 (Armadillo-type fold), IPR024395 (CLASP N-terminal domain)	GO:0005488 (binding)
Niben101Scf04329g05016.1	AT4G18590.1	****	Nucleic acid-binding, OB-fold-like protein LENGTH=106	IPR013970 (Replication factor A protein 3)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0006310 (DNA recombination)
Niben101Scf01951g00003.1	sp|P41387|TBB_ONCGI	*-*-	Tubulin beta chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf07607g02004.1	emb|CDX81322.1|	***-	BnaC09g07330D [Brassica napus]		
Niben101Scf06613g05001.1	sp|Q67N06|AROE_SYMTH	****	Shikimate dehydrogenase	IPR013708 (Shikimate dehydrogenase substrate binding, N-terminal), IPR013785 (Aldolase-type TIM barrel), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0003855 (3-dehydroquinate dehydratase activity), GO:0004764 (shikimate 3-dehydrogenase (NADP+) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf13415g00001.1	AT2G26460.1	***-	RED family protein LENGTH=585	IPR012492 (Protein RED, C-terminal), IPR012916 (RED-like, N-terminal)	GO:0005634 (nucleus)
Niben101Scf27872g00001.1	sp|P0CC48|NU2C1_COFAR	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic		
Niben101Scf02508g04001.1	AT3G24020.1	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=243	IPR004265 (Plant disease resistance response protein)	
Niben101Scf06825g00010.1	AT1G73390.1	***-	Endosomal targeting BRO1-like domain-containing protein LENGTH=419	IPR004328 (BRO1 domain)	
Niben101Scf00684g00001.1	sp|A6QP05|DHR12_BOVIN	--**	Dehydrogenase/reductase SDR family member 12	IPR002198 (Short-chain dehydrogenase/reductase SDR)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf05173g09002.1			Unknown protein		
Niben101Scf00448g17006.1	sp|Q84UU9|TPS06_ARATH	*-**	Terpenoid synthase 6	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf03400g02001.1	sp|Q2T9S3|RPC6_BOVIN	****	DNA-directed RNA polymerase III subunit RPC6	IPR016049 (RNA polymerase Rpc34-like)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf02892g01021.1			Unknown protein		
Niben101Scf01933g04004.1	sp|Q9FM65|FLA1_ARATH	***-	Fasciclin-like arabinogalactan protein 1	IPR000782 (FAS1 domain)	
Niben101Scf00672g01002.1	AT5G12890.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=488	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf10763g00006.1	sp|Q9ULV8|CBLC_HUMAN	--*-	E3 ubiquitin-protein ligase CBL-C	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf11037g02015.1	gb|KEH36729.1|	*-*-	E3 ubiquitin-protein ligase RF298-like protein, putative [Medicago truncatula]		
Niben101Scf04555g00015.1	sp|F4I7L1|TRB4_ARATH	--**	Telomere repeat-binding factor 4	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06078g02033.1	sp|Q6F358|PLA6_ORYSJ	***-	Phospholipase A1-II 6	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf03028g03021.1	sp|P21716|CYB_AKOJU	***-	Cytochrome b	IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf02581g03016.1	sp|A5WCI2|GATA_PSYWF	*-*-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf10749g00007.1	AT1G50660.1	***-	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=725		
Niben101Scf07048g01011.1	sp|Q8C0D7|ING4_MOUSE	***-	Inhibitor of growth protein 4	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR024610 (Inhibitor of growth protein, N-terminal), IPR028651 (ING family)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016568 (chromatin modification), GO:0035064 (methylated histone binding)
Niben101Scf03949g07008.1	ref|XP_007042854.1|	*-*-	SNARE-like superfamily protein isoform 1 [Theobroma cacao] gb|EOX98685.1| SNARE-like superfamily protein isoform 1 [Theobroma cacao]		
Niben101Scf07648g00003.1	sp|Q0WPE9|NAT7_ARATH	*-**	Nucleobase-ascorbate transporter 7	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00049g01003.1	sp|Q9FLG1|BXL4_ARATH	***-	Beta-D-xylosidase 4	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf12321g01025.1	sp|Q05967|PGLR_TOBAC	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf11182g00012.1	gb|KEH33339.1|	****	heavy metal transport/detoxification superfamily protein [Medicago truncatula]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf12758g00002.1			Unknown protein		
Niben101Scf04832g01005.1	AT5G45310.1	*-*-	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=352		
Niben101Scf08693g00002.1	sp|Q8LC03|ATB13_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-13	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR013978 (MEKHLA), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf04653g01010.1			Unknown protein		
Niben101Scf07162g01004.1	ref|XP_007036061.1|	***-	ARM repeat superfamily protein, putative isoform 1 [Theobroma cacao] gb|EOY20562.1| ARM repeat superfamily protein, putative isoform 1 [Theobroma cacao]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf03376g05003.1	sp|Q6MJV1|FTSH2_BDEBA	*-**	ATP-dependent zinc metalloprotease FtsH 2	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02071g01012.1	gb|KEH39499.1|	****	Rab GTPase activator [Medicago truncatula]	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf00603g04003.1			Unknown protein		
Niben101Scf04558g02009.1	ref|XP_003617186.1|	***-	Nuclear control of ATPase protein [Medicago truncatula] gb|AET00145.1| ATP synthase regulation protein NCA2 [Medicago truncatula]	IPR013946 (Nuclear control of ATP synthase 2)	
Niben101Scf03766g07007.1	sp|Q80UX8|ABHDD_MOUSE	***-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02494g04002.1	AT5G51545.1	*-*-	low psii accumulation2 LENGTH=185		
Niben101Scf02897g00012.1	sp|A0DJ90|PPX2_PARTE	--*-	Serine/threonine-protein phosphatase PP-X homolog 2	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf01847g05004.1	sp|Q5FND3|GATA_GLUOX	***-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf02045g02010.1	sp|Q9SHE9|LBD4_ARATH	***-	LOB domain-containing protein 4	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf18951g00021.1	sp|P27480|LOXA_PHAVU	***-	Linoleate 9S-lipoxygenase 1	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08803g00015.1	sp|Q9PMA7|NUOL_CAMJE	****	NADH-quinone oxidoreductase subunit L	IPR003945 (NADH-plastoquinone oxidoreductase, chain 5)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf02394g01004.1	sp|Q9C8E7|GLR33_ARATH	*-*-	Glutamate receptor 3.3	IPR028082 (Periplasmic binding protein-like I)	
Niben101Scf02050g00008.1	sp|F4I2J8|CATIN_ARATH	*-*-	Cactin		
Niben101Scf05712g00001.1	sp|Q9LP45|PSD11_ARATH	***-	26S proteasome non-ATPase regulatory subunit 11 homolog	IPR000717 (Proteasome component (PCI) domain), IPR011990 (Tetratricopeptide-like helical domain), IPR013143 (PCI/PINT associated module)	GO:0005515 (protein binding)
Niben101Scf06236g01023.1	sp|Q9LPC1|GAE2_ARATH	*-*-	UDP-glucuronate 4-epimerase 2	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf05173g07005.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf12266g00006.1	AT3G24740.1	***-	Protein of unknown function (DUF1644) LENGTH=354	IPR012866 (Protein of unknown function DUF1644)	
Niben101Scf01235g00012.1	sp|P34102|PK3_DICDI	*-**	Protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01854g00027.1	sp|Q8CFD1|RBM45_RAT	--**	RNA-binding protein 45	IPR001876 (Zinc finger, RanBP2-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf01177g06016.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00669g02002.1	emb|CDX74851.1|	*-*-	BnaA05g05970D [Brassica napus]		
Niben101Scf02521g01022.1	sp|Q91WD1|RPC4_MOUSE	--**	DNA-directed RNA polymerase III subunit RPC4	IPR007811 (DNA-directed RNA polymerase III subunit RPC4)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005666 (DNA-directed RNA polymerase III complex), GO:0006383 (transcription from RNA polymerase III promoter)
Niben101Scf05044g00002.1	sp|C4K7P4|MNME_HAMD5	--*-	tRNA modification GTPase MnmE	IPR005690 (Chloroplast protein import component Toc86/159), IPR024283 (Domain of unknown function DUF3406, chloroplast translocase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides)
Niben101Scf04382g00015.1	sp|A2WWV5|ERG1_ORYSI	***-	Elicitor-responsive protein 1	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf05307g04003.1	sp|P40977|PLC1_SCHPO	****	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase 1	IPR001192 (Phosphoinositide phospholipase C family), IPR011992 (EF-hand domain pair)	GO:0004435 (phosphatidylinositol phospholipase C activity), GO:0005515 (protein binding), GO:0006629 (lipid metabolic process), GO:0007165 (signal transduction), GO:0008081 (phosphoric diester hydrolase activity), GO:0035556 (intracellular signal transduction)
Niben101Scf00272g00003.1	gb|KEH30805.1|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf10505g00001.1	AT4G32440.2	***-	Plant Tudor-like RNA-binding protein LENGTH=393	IPR005491 (EMSY N-terminal), IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf01334g06010.1	sp|Q9S7P5|SPL12_ARATH	***-	Squamosa promoter-binding-like protein 12	IPR020683 (Ankyrin repeat-containing domain)	
Niben101Scf04052g01022.1	gb|ABD37875.1|	*-*-	catsup protein [Drosophila melanogaster]	IPR003689 (Zinc/iron permease)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02474g00009.1	AT1G15740.1	***-	Leucine-rich repeat family protein LENGTH=585	IPR001611 (Leucine-rich repeat), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf09467g02002.1			Unknown protein		
Niben101Scf03599g01001.1	emb|CAH67466.1|	***-	OsJ_15593 [Oryza sativa Japonica Group]		
Niben101Ctg14706g00003.1	AT5G66560.1	***-	Phototropic-responsive NPH3 family protein LENGTH=668	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf03062g02008.1	ref|NP_001044673.1|	***-	product [Oryza sativa Japonica Group]	IPR006461 (Uncharacterised protein family Cys-rich), IPR021369 (Protein of unknown function DUF2985)	
Niben101Scf05440g00013.1	sp|Q9SJ25|CADH2_ARATH	*-*-	Cinnamyl alcohol dehydrogenase 2	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01234g00006.1	sp|E2RQ15|RAB25_CANFA	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf09010g02006.1	gb|KFB84379.1|	***-	multidrug MFS transporter [Calothrix sp. 336/3]	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR010099 (Epimerase family protein SDR39U1)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf02907g06031.1	sp|P42327|ADH2_GEOSE	***-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04230g00002.1	ref|XP_002509600.1|	****	nucleic acid binding protein, putative [Ricinus communis] gb|EEF50987.1| nucleic acid binding protein, putative [Ricinus communis]	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR029060 (PIN domain-like)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf02953g01015.1	sp|Q8BUH7|RNF26_MOUSE	--*-	Ring finger protein 26	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08137g03005.1	sp|Q0K1H0|1A1D_CUPNH	***-	1-aminocyclopropane-1-carboxylate deaminase	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme)	
Niben101Scf01139g02007.1	sp|A1SE34|NUOH_NOCSJ	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf06277g04011.1	AT3G17840.1	*-**	receptor-like kinase 902 LENGTH=647	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02360g03016.1	sp|Q9SSR4|PPR77_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06154g01015.1	sp|Q9M376|VA727_ARATH	***-	Vesicle-associated membrane protein 727	IPR011012 (Longin-like domain)	GO:0006810 (transport)
Niben101Scf01143g06015.1	sp|Q9FNL2|PP418_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf12414g00011.1	AT5G62290.1	****	nucleotide-sensitive chloride conductance regulator (ICln) family protein LENGTH=229	IPR003521 (ICln)	GO:0000387 (spliceosomal snRNP assembly), GO:0005829 (cytosol), GO:0005886 (plasma membrane), GO:0006821 (chloride transport), GO:0006884 (cell volume homeostasis), GO:0034709 (methylosome), GO:0034715 (pICln-Sm protein complex)
Niben101Scf10676g02002.1			Unknown protein		
Niben101Ctg13095g00002.1	sp|Q9LS76|TPS15_ARATH	*-**	Terpenoid synthase 15	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf07166g01011.1	gb|KEH44010.1|	***-	MADS-box transcription factor family protein [Medicago truncatula]	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03069g00002.1	sp|Q9FHM4|MA653_ARATH	****	65-kDa microtubule-associated protein 3	IPR007145 (Microtubule-associated protein, MAP65/Ase1/PRC1)	GO:0000226 (microtubule cytoskeleton organization), GO:0000910 (cytokinesis), GO:0008017 (microtubule binding)
Niben101Scf01696g01005.1			Unknown protein		
Niben101Scf29220g00001.1	sp|Q80X41|VRK1_MOUSE	--*-	Serine/threonine-protein kinase VRK1		
Niben101Scf25930g00020.1	sp|Q9C7F5|NTF2_ARATH	***-	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2)	
Niben101Scf00050g03006.1	sp|Q5XF11|FB248_ARATH	***-	F-box protein		
Niben101Scf03732g06003.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf36738g00007.1	sp|Q9SRW7|APK3_ARATH	****	Adenylyl-sulfate kinase 3	IPR002891 (Adenylylsulphate kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000103 (sulfate assimilation), GO:0004020 (adenylylsulfate kinase activity), GO:0005524 (ATP binding)
Niben101Scf02459g03004.1	sp|Q04189|TAP1_ANTMA	***-	Protein TAP1		
Niben101Scf00730g02002.1	sp|Q2UQW3|ROK1_ASPOR	*-*-	ATP-dependent RNA helicase rok1	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf07668g00034.1	AT3G07150.1	***-	unknown protein; Has 19 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=199		
Niben101Scf05554g02002.1	emb|CDX68424.1|	*-*-	BnaC01g25020D [Brassica napus]		
Niben101Scf04939g02008.1	sp|Q01366|PSBA_PHAVU	****	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M), IPR024937 (Domain X)	GO:0006397 (mRNA processing), GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf01052g06004.1	sp|Q93Y35|PSMD6_ARATH	***-	26S proteasome non-ATPase regulatory subunit 6 homolog	IPR000717 (Proteasome component (PCI) domain), IPR019585 (26S proteasome, regulatory subunit Rpn7)	GO:0005515 (protein binding)
Niben101Scf18669g00004.1	sp|Q9M088|E135_ARATH	***-	Glucan endo-1,3-beta-glucosidase 5	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf11936g01039.1	sp|P50455|LEU3_SULTO	*-**	3-isopropylmalate dehydrogenase	IPR001804 (Isocitrate and isopropylmalate dehydrogenases family), IPR024084 (Isopropylmalate dehydrogenase-like domain)	GO:0000287 (magnesium ion binding), GO:0004449 (isocitrate dehydrogenase (NAD+) activity), GO:0006099 (tricarboxylic acid cycle), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08028g00010.1	sp|Q9ESN2|TRI39_MOUSE	--*-	E3 ubiquitin-protein ligase TRIM39	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05820g01009.1	sp|P0A3D0|FER_SYNEL	***-	Ferredoxin-1	IPR010241 (Ferredoxin [2Fe-2S], plant), IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0022900 (electron transport chain), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf02072g03007.1	AT4G08810.1	***-	calcium ion binding LENGTH=552		
Niben101Scf06758g00012.1	sp|Q9MV60|MATK_PINBN	--*-	Maturase K	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf16066g00003.1	sp|Q38898|AKT2_ARATH	--*-	Potassium channel AKT2/3		
Niben101Scf16516g00002.1	emb|CDX71464.1|	--*-	BnaC04g16990D [Brassica napus]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf05211g00004.1	emb|CEF98693.1|	--*-	Uncharacterised protein family Ycf49 [Ostreococcus tauri]		
Niben101Scf00887g00004.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf18306g00021.1	ref|WP_006854563.1|	--*-	membrane protein [Synechococcus sp. WH 8016] gb|EHA60641.1| protein of unknown function DUF751 [Synechococcus sp. WH 8016]	IPR008470 (Uncharacterised protein family Ycf33)	
Niben101Scf02463g00002.1	sp|Q8CBG9|RN170_MOUSE	--*-	E3 ubiquitin-protein ligase RNF170	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf11288g00007.1	gb|AGU36400.1|	***-	11S globulin precursor, partial [Helianthus annuus]	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf03563g00035.1	ref|XP_002525540.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF36799.1| conserved hypothetical protein [Ricinus communis]	IPR001357 (BRCT domain)	
Niben101Scf13601g00006.1	sp|B9SBU9|TPS5_RICCO	*-**	Terpene synthase 5	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf00611g05001.1	AT2G19385.1	****	zinc ion binding LENGTH=275	IPR003604 (Zinc finger, U1-type), IPR014898 (Zinc finger, C2H2, LYAR-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf08630g00005.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf04131g01007.1	sp|O80340|ERF78_ARATH	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07937g03016.1	sp|Q9BSL1|UBAC1_HUMAN	--*-	Ubiquitin-associated domain-containing protein 1	IPR009060 (UBA-like)	GO:0005515 (protein binding)
Niben101Scf04385g01017.1	sp|Q67XQ0|Y4424_ARATH	***-	DUF21 domain-containing protein	IPR002550 (Domain of unknown function DUF21)	
Niben101Scf02828g00002.1			Unknown protein		
Niben101Scf08195g07024.1	sp|Q9C7N4|GDL15_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf09696g01122.1			Unknown protein		
Niben101Scf00820g00007.1	gb|KEH42947.1|	***-	lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf05220g01003.1	sp|A8FED1|UGTP_BACP2	***-	Processive diacylglycerol beta-glucosyltransferase	IPR009695 (Diacylglycerol glucosyltransferase, N-terminal)	GO:0009247 (glycolipid biosynthetic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06955g03008.1	sp|P22071|3BHS1_RAT	****	3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1	IPR003388 (Reticulon), IPR016040 (NAD(P)-binding domain)	GO:0003854 (3-beta-hydroxy-delta5-steroid dehydrogenase activity), GO:0006694 (steroid biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf08196g01007.1	AT2G30490.1	***-	cinnamate-4-hydroxylase LENGTH=505	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf16738g00009.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf05488g00013.1	sp|P45725|PAL3_ARATH	*-**	Phenylalanine ammonia-lyase 3	IPR001106 (Aromatic amino acid lyase), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf01641g00011.1	sp|Q9LZ19|PP364_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02792g02006.1	gb|ACG60684.1|	*-*-	maize transposon MuDR-like protein [Brassica oleracea var. alboglabra]		
Niben101Scf02392g00002.1	AT5G64420.1	****	DNA polymerase V family LENGTH=1306	IPR007015 (DNA polymerase V)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf02828g02018.1			Unknown protein		
Niben101Scf11705g00003.1	sp|P05116|ACCO1_SOLLC	***-	1-aminocyclopropane-1-carboxylate oxidase 1	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00703g04008.1	sp|F4J424|RIC5_ARATH	--*-	CRIB domain-containing protein RIC5		
Niben101Scf00375g03016.1	sp|Q8GW19|FACE2_ARATH	--*-	CAAX prenyl protease 2		
Niben101Scf08195g02009.1	sp|Q9MB94|ACCO_PRUMU	*-*-	1-aminocyclopropane-1-carboxylate oxidase	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf10381g01013.1	ref|NP_001052354.1|	***-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf12628g02015.1	AT5G11730.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=386	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf04434g00002.1	gb|AES87033.2|	***-	DUF674 family protein [Medicago truncatula]	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf25768g00009.1	sp|Q5SMI4|RL393_ORYSJ	***-	60S ribosomal protein L39-3	IPR000077 (Ribosomal protein L39e), IPR023626 (Ribosomal protein L39e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10309g01003.1	AT1G65730.1	***-	YELLOW STRIPE like 7 LENGTH=688	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf03461g05024.1	sp|P11017|GBB2_BOVIN	-***	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04385g01016.1	sp|Q8CFD1|RBM45_RAT	--**	RNA-binding protein 45	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02463g00001.1	sp|P52230|THIO1_STRCO	***-	Thioredoxin-1	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02272g03001.1	AT1G58100.1	***-	TCP family transcription factor LENGTH=401	IPR005333 (Transcription factor, TCP)	
Niben101Scf14041g00001.1	sp|Q0WPW4|ACCO5_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase 5	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf26939g00002.1	sp|O04893|AGLU_SPIOL	***-	Alpha-glucosidase	IPR000322 (Glycoside hydrolase family 31), IPR011013 (Galactose mutarotase-like domain), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf04292g13010.1			Unknown protein		
Niben101Scf03282g01001.1	sp|Q9JMK8|VPS54_RAT	*-*-	Vacuolar protein sorting-associated protein 54		
Niben101Scf04262g00025.1	sp|Q2NQH6|BIOH_SODGM	*-*-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf10158g01035.1	sp|A6L7E4|DAPAT_BACV8	****	LL-diaminopimelate aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase), IPR019942 (LL-diaminopimelate aminotransferase, plants and Chlamydia type)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0009089 (lysine biosynthetic process via diaminopimelate), GO:0010285 (L,L-diaminopimelate aminotransferase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf06395g01008.1	emb|CDY18986.1|	--*-	BnaC01g20820D [Brassica napus]		
Niben101Scf02441g04003.1	emb|CDY10434.1|	***-	BnaCnng03350D [Brassica napus]		
Niben101Scf02562g01003.1	emb|CDX68674.1|	***-	BnaC01g07790D [Brassica napus]		
Niben101Scf07823g00026.1	AT4G28210.1	***-	embryo defective 1923 LENGTH=348		
Niben101Scf06758g00011.1	ref|XP_002535856.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03441g02004.1	sp|Q9SNC6|PUB13_ARATH	***-	U-box domain-containing protein 13	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf08516g00025.1	sp|B4SCE7|IF2_PELPB	--*-	Translation initiation factor IF-2		
Niben101Scf03056g00007.1	sp|Q94JW8|SPL6_ARATH	*-**	Squamosa promoter-binding-like protein 6	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf04181g00031.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf02680g00004.1			Unknown protein		
Niben101Scf04487g02001.1	sp|Q94502|GANAB_DICDI	***-	Neutral alpha-glucosidase AB	IPR000322 (Glycoside hydrolase family 31), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf14108g00003.1	sp|Q8VZF6|EDR2L_ARATH	*-*-	Protein ENHANCED DISEASE RESISTANCE 2-like		
Niben101Scf00168g01010.1	sp|B1IL45|RISB_CLOBK	****	6,7-dimethyl-8-ribityllumazine synthase	IPR002180 (6,7-dimethyl-8-ribityllumazine synthase)	GO:0009231 (riboflavin biosynthetic process), GO:0009349 (riboflavin synthase complex)
Niben101Scf07668g00033.1	gb|KEH44183.1|	***-	alpha/beta fold hydrolase [Medicago truncatula]	IPR016969 (Uncharacterised conserved protein UCP031088, alpha/beta hydrolase, At1g15070), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00157g03004.1	AT1G50900.1	***-	Ankyrin repeat family protein LENGTH=175	IPR020683 (Ankyrin repeat-containing domain)	
Niben101Scf01548g00021.1	sp|Q9SFC7|FB135_ARATH	*-*-	F-box protein		
Niben101Scf13289g00009.1	sp|Q9NGQ2|KIF1_DICDI	*-**	Kinesin-related protein 1	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf01688g02001.1	sp|Q11180|WHT1_CAEEL	****	ABC transporter ATP-binding protein/permease wht-1	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00854g03039.1	ref|XP_002529236.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF33149.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09191g02016.1	sp|Q08CG8|RNF44_DANRE	--*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04860g04010.1			Unknown protein		
Niben101Scf01696g01006.1	ref|WP_031334121.1|	*-*-	NAD/FAD-dependent oxidoreductase [Xanthomonas axonopodis]		
Niben101Scf07034g04007.1	sp|Q9FVX1|GRXC3_ARATH	*-*-	Glutaredoxin-C3	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf05740g01001.1	sp|Q9FZ03|MAN2_SOLLC	***-	Mannan endo-1,4-beta-mannosidase 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01451g05008.1	sp|Q9LI00|6PGD1_ORYSJ	--**	6-phosphogluconate dehydrogenase, decarboxylating 1	IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR015815 (Hydroxy monocarboxylic acid anion dehydrogenase, HIBADH-type), IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf17701g01018.1	sp|Q84WP6|NAC43_ARATH	***-	NAC domain-containing protein 43	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04038g00001.1	AT3G10190.1	****	Calcium-binding EF-hand family protein LENGTH=209	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00322g00004.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05989g00011.1	sp|O26144|RPOD_METTH	****	DNA-directed RNA polymerase subunit D	IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf02581g04012.1	AT1G11430.1	*-*-	plastid developmental protein DAG, putative LENGTH=232		
Niben101Scf03171g03020.1	ref|XP_002512582.1|	****	nucleic acid binding protein, putative [Ricinus communis] gb|EEF50034.1| nucleic acid binding protein, putative [Ricinus communis]	IPR000467 (G-patch domain), IPR007087 (Zinc finger, C2H2)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf06238g01005.1	sp|Q7M443|CHIT2_TULBA	***-	Chitinase 2	IPR000677 (2S globulin), IPR017853 (Glycoside hydrolase superfamily)	
Niben101Scf04654g00001.1	emb|CDX73119.1|	*-*-	BnaC06g35670D [Brassica napus]		
Niben101Scf00024g00008.1	sp|Q9LMC9|GLT2_ARATH	***-	Germin-like protein subfamily T member 2	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf00739g03001.1	sp|Q6AT25|C3H34_ORYSJ	***-	Zinc finger CCCH domain-containing protein 34	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf02669g02015.1	AT5G17530.3	***-	phosphoglucosamine mutase family protein LENGTH=614	IPR005841 (Alpha-D-phosphohexomutase superfamily)	GO:0005975 (carbohydrate metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf05250g00010.1			Unknown protein		
Niben101Scf06267g02001.1	sp|O95619|YETS4_HUMAN	*-*-	YEATS domain-containing protein 4	IPR005033 (YEATS)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06019g01029.1	sp|Q91Z38|TTC1_MOUSE	*-*-	Tetratricopeptide repeat protein 1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf15632g00004.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf02379g03014.1	sp|Q118K5|CCS1_TRIEI	--*-	Cytochrome c biogenesis protein CcsB	IPR007816 (ResB-like domain)	
Niben101Scf10482g01016.1	ref|WP_033141877.1|	*-*-	small multi-drug export protein [Blautia producta]	IPR009577 (Putative small multi-drug export)	
Niben101Scf05407g01010.1	sp|Q9SU40|SKU5_ARATH	***-	Monocopper oxidase-like protein SKU5	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf19230g01016.1	AT5G63460.4	***-	SAP domain-containing protein LENGTH=174	IPR003034 (SAP domain), IPR018276 (Ubiquitin ligase, Det1/DDB1-complexing)	
Niben101Scf19719g00009.1	sp|B6YSQ2|RS11_THEON	***-	30S ribosomal protein S11	IPR001971 (Ribosomal protein S11)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01341g03006.1	AT2G15020.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=526		
Niben101Scf04054g02008.1	ref|XP_007047826.1|	*-*-	Folic acid and derivative biosynthetic process, putative [Theobroma cacao] gb|EOX91983.1| Folic acid and derivative biosynthetic process, putative [Theobroma cacao]	IPR005645 (Serine hydrolase FSH)	
Niben101Scf11830g00008.1	emb|CAE04764.3|	--*-	OSJNBa0079C19.5 [Oryza sativa Japonica Group]		
Niben101Scf10857g00004.1	sp|A6X1X8|FABH_OCHA4	*-*-	3-oxoacyl-[acyl-carrier-protein] synthase 3	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0016746 (transferase activity, transferring acyl groups), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf23152g00002.1			Unknown protein		
Niben101Scf00451g02006.1			Unknown protein		
Niben101Scf07161g00017.1	sp|Q9SL02|RAD50_ARATH	****	DNA repair protein RAD50	IPR004584 (DNA repair protein Rad50, eukaryotes), IPR013134 (RAD50, zinc hook), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000723 (telomere maintenance), GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0016887 (ATPase activity), GO:0030870 (Mre11 complex)
Niben101Scf05548g02009.1	AT1G10830.1	***-	15-cis-zeta-carotene isomerase LENGTH=367	IPR009915 (NnrU)	
Niben101Scf00854g01024.1	sp|Q49KY4|PSBJ_EUCGG	-***	Photosystem II reaction center protein J	IPR002682 (Photosystem II PsbJ)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0015979 (photosynthesis), GO:0016020 (membrane)
Niben101Scf01634g05009.1	sp|Q9HAV0|GBB4_HUMAN	****	Guanine nucleotide-binding protein subunit beta-4	IPR014906 (Pre-mRNA processing factor 4 (PRP4)-like), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR027106 (U4/U6 small nuclear ribonucleoprotein Prp4)	GO:0005515 (protein binding), GO:0008380 (RNA splicing)
Niben101Scf00879g03006.1	AT4G03420.1	***-	Protein of unknown function (DUF789) LENGTH=310	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf03160g02002.1	sp|Q652P9|GL93_ORYSJ	***-	Germin-like protein 9-3	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf14781g00019.1	sp|Q9SCX8|PPA17_ARATH	****	Purple acid phosphatase 17	IPR024927 (Acid phosphatase, type 5), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity)
Niben101Scf05004g04012.1	emb|CDX72303.1|	***-	BnaC07g43250D [Brassica napus]	IPR006747 (Protein of unknown function DUF599)	
Niben101Scf08926g08003.1			Unknown protein		
Niben101Scf06668g03003.1	AT4G03430.1	*-*-	pre-mRNA splicing factor-related LENGTH=1029	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Scf32212g00015.1	sp|B1Q3J6|DNM1B_ORYSJ	****	DNA (cytosine-5)-methyltransferase 1B	IPR001525 (C-5 cytosine methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0003886 (DNA (cytosine-5-)-methyltransferase activity), GO:0005634 (nucleus), GO:0006306 (DNA methylation), GO:0008168 (methyltransferase activity), GO:0090116 (C-5 methylation of cytosine)
Niben101Scf04314g02017.1			Unknown protein		
Niben101Scf09790g00012.1	AT4G00150.1	*-*-	GRAS family transcription factor LENGTH=558	IPR005202 (Transcription factor GRAS)	
Niben101Scf03735g03012.1	sp|Q9FXI9|GUN2_ARATH	*-*-	Endoglucanase 2	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08326g00058.1	sp|O93866|HSP70_TRIRU	*-*-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family)	
Niben101Scf00047g03008.1	sp|O80944|AKRC8_ARATH	***-	Aldo-keto reductase family 4 member C8	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf04339g00001.1	sp|Q64092|TFE3_MOUSE	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05764g02009.1	sp|Q9FJZ9|PER72_ARATH	****	Peroxidase 72	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06436g03005.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf05239g01022.1	sp|F4IAT2|THOC2_ARATH	*-*-	THO complex subunit 2	IPR021726 (THO complex, subunitTHOC2, N-terminal)	
Niben101Scf03541g00003.1			Unknown protein		
Niben101Scf07035g00004.1	gb|AAX38236.1|	*-**	strictosidine synthase family protein [Brassica napus]	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf01147g04014.1	sp|O44827|FGT1_CAEEL	*-**	Facilitated glucose transporter protein 1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain), IPR022091 (TATA element modulatory factor 1 TATA binding), IPR022092 (TATA element modulatory factor 1 DNA binding)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04103g05008.1	sp|P07829|ACT3_DICDI	***-	Actin-3	IPR004000 (Actin family)	
Niben101Scf00503g02008.1	sp|Q9SVA5|PP357_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01818g02002.1	sp|B7JWT6|RL10_CYAP8	***-	50S ribosomal protein L10	IPR001790 (Ribosomal protein L10/acidic P0)	GO:0005622 (intracellular), GO:0042254 (ribosome biogenesis)
Niben101Scf11831g00005.1	gb|EQB56868.1|	-**-	NADH:ubiquinone oxidoreductase 11.6kD subunit [Colletotrichum gloeosporioides Cg-14]	IPR019329 (NADH:ubiquinone oxidoreductase, ESSS subunit)	
Niben101Scf27001g00003.1	AT2G45750.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=631	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf21459g00015.1	sp|B3H5Q1|BGL11_ARATH	***-	Beta-glucosidase 11	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05147g01003.1	ref|XP_002516936.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF45550.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01571g00007.1	AT1G48430.1	*-**	Dihydroxyacetone kinase LENGTH=593	IPR004007 (DhaL domain)	GO:0004371 (glycerone kinase activity), GO:0006071 (glycerol metabolic process)
Niben101Scf03913g01018.1	sp|Q9FIA1|GDL87_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00611g11028.1	sp|Q556Y4|KC1_DICDI	****	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00770g02008.1	gb|ACZ52183.1|	*-*-	ribosomal protein L10 (mitochondrion) [Digitalis purpurea]		
Niben101Scf14210g00021.1	gb|KEH33525.1|	***-	late embryogenesis abundant protein [Medicago truncatula]	IPR004864 (Late embryogenesis abundant protein, LEA-14), IPR013783 (Immunoglobulin-like fold)	GO:0009269 (response to desiccation)
Niben101Scf04016g01002.1	AT5G49890.1	****	chloride channel C LENGTH=779	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00135g00025.1	sp|Q9T0I8|MTN1_ARATH	***-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1	IPR018017 (Nucleoside phosphorylase)	GO:0003824 (catalytic activity), GO:0009116 (nucleoside metabolic process)
Niben101Scf01756g01009.1	AT2G46220.1	*-*-	Uncharacterized conserved protein (DUF2358) LENGTH=241	IPR018790 (Protein of unknown function DUF2358)	
Niben101Scf00343g09015.1	sp|Q9LUJ2|PP249_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05920g02001.1	sp|P53756|PDR18_YEAST	*-**	ABC transporter ATP-binding protein/permease PDR18	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf06682g00007.1	sp|Q5QXX1|RS14_IDILO	***-	30S ribosomal protein S14	IPR001209 (Ribosomal protein S14)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00338g10012.1	AT1G73340.1	*-*-	Cytochrome P450 superfamily protein LENGTH=514	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07113g00010.1	sp|O48700|PUB6_ARATH	***-	U-box domain-containing protein 6	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf06509g00010.1	sp|A8E283|VPN7_BPPHE	--*-	Tail fiber protein		
Niben101Scf07261g01014.1	AT1G60140.1	****	trehalose phosphate synthase LENGTH=861	IPR001830 (Glycosyl transferase, family 20), IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf06590g06001.1	AT3G46180.1	***-	UDP-galactose transporter 5 LENGTH=347	IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf01323g02005.1	sp|Q6L8G0|ZIP5_ORYSJ	****	Zinc transporter 5	IPR003689 (Zinc/iron permease)	GO:0005385 (zinc ion transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport), GO:0071577 (zinc ion transmembrane transport)
Niben101Ctg05535g00001.1	sp|Q8FUZ3|UBIE_BRUSU	--**	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf14390g00007.1	sp|Q8RU27|UPTG2_SOLTU	***-	Alpha-1,4-glucan-protein synthase [UDP-forming] 2	IPR004901 (Reversibly glycosylated polypeptide family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016866 (intramolecular transferase activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf11208g00002.1	sp|Q39013|NAC2_ARATH	***-	NAC domain-containing protein 2	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04455g00009.1	gb|AAK20904.1|	***-	plastid-targeted protein 3 [Craterostigma plantagineum]		
Niben101Scf00163g00004.1	sp|Q0G9R3|CCSA_DAUCA	*-**	Cytochrome c biogenesis protein CcsA	IPR002541 (Cytochrome c assembly protein)	GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf00557g01001.1			Unknown protein		
Niben101Ctg12683g00001.1	sp|Q9LUZ4|C3H66_ARATH	*-*-	Zinc finger CCCH domain-containing protein 66	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf00684g00002.1	sp|P51153|RAB13_HUMAN	***-	Ras-related protein Rab-13	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf01576g03010.1	AT2G46490.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=134		
Niben101Scf11009g00050.1	sp|Q2KIB9|RPP29_BOVIN	*-**	Ribonuclease P protein subunit p29	IPR016848 (Ribonuclease P/MRP, p29 subunit), IPR023534 (Rof/RNase P-like)	GO:0000172 (ribonuclease MRP complex), GO:0003723 (RNA binding), GO:0004540 (ribonuclease activity), GO:0005655 (nucleolar ribonuclease P complex), GO:0006364 (rRNA processing), GO:0006379 (mRNA cleavage), GO:0008033 (tRNA processing), GO:0030677 (ribonuclease P complex)
Niben101Scf02215g00006.1	gb|KEH25226.1|	--*-	late embryogenesis abundant protein (LEA) family protein [Medicago truncatula]	IPR012511 (S-adenosyl-l-methionine decarboxylase leader peptide)	
Niben101Scf02530g05009.1	sp|P21885|SPEA_BACSU	*-*-	Arginine decarboxylase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00468g01013.1	AT1G45976.1	****	S-ribonuclease binding protein 1 LENGTH=325	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00225g03002.1	AT5G24520.1	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=341	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf10252g00001.1	sp|A4IF69|NHLC2_BOVIN	*-*-	NHL repeat-containing protein 2	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0005515 (protein binding)
Niben101Scf00270g13010.1	sp|Q8H102|BH128_ARATH	*-*-	Transcription factor bHLH128	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00388g00001.1	sp|Q5XPI3|RN123_MOUSE	****	E3 ubiquitin-protein ligase RNF123	IPR001870 (B30.2/SPRY domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR019474 (Ubiquitin conjugation factor E4, core)	GO:0000151 (ubiquitin ligase complex), GO:0005515 (protein binding), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination), GO:0034450 (ubiquitin-ubiquitin ligase activity)
Niben101Scf12676g00009.1			Unknown protein		
Niben101Scf05776g01039.1	sp|P05499|ATP6_TOBAC	*-*-	ATP synthase subunit a		
Niben101Scf01479g03017.1	gb|AAA80302.1|	*-*-	senescence-associated protein [Arabidopsis thaliana]	IPR001763 (Rhodanese-like domain)	
Niben101Scf28062g00003.1	sp|O74258|ACT_OGAPD	*-*-	Actin	IPR004000 (Actin family)	
Niben101Scf01326g02002.1	sp|Q9FRL5|ZHD5_ARATH	*-*-	Zinc-finger homeodomain protein 5	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain)	
Niben101Scf01002g08001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06158g02005.1	AT1G18160.1	*-**	Protein kinase superfamily protein LENGTH=992	IPR011009 (Protein kinase-like domain), IPR016253 (Integrin-linked protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0009966 (regulation of signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00592g06005.1	ref|XP_003588331.1|	*-*-	NADH-ubiquinone oxidoreductase chain [Medicago truncatula]		
Niben101Scf07527g00006.1	sp|P22242|DRPE_CRAPL	***-	Desiccation-related protein PCC13-62		
Niben101Scf06155g01027.1	sp|Q9C7A2|Y3236_ARATH	--*-	Ankyrin repeat-containing protein	IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	
Niben101Scf09589g00015.1	sp|Q1XDM0|ODPA_PYRYE	****	Pyruvate dehydrogenase E1 component subunit alpha	IPR017597 (Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y), IPR029061 (Thiamin diphosphate-binding fold)	GO:0004739 (pyruvate dehydrogenase (acetyl-transferring) activity), GO:0006096 (glycolytic process), GO:0008152 (metabolic process), GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor), GO:0043231 (intracellular membrane-bounded organelle), GO:0055114 (oxidation-reduction process)
Niben101Scf07152g03012.1	ref|XP_007010047.1|	*-*-	NAC domain protein,		
Niben101Scf07121g00011.1	AT2G42070.1	*-**	nudix hydrolase homolog 23 LENGTH=280	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf02072g00018.1	sp|Q86MW9|SINA_SCHMA	****	E3 ubiquitin-protein ligase sina	IPR004162 (E3 ubiquitin-protein ligase SINA like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf11376g00010.1	sp|Q91W34|RUS1_MOUSE	***-	RUS1 family protein C16orf58 homolog	IPR006968 (Root UVB sensitive family)	
Niben101Scf07742g01007.1	sp|Q9SHZ8|PP168_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf01851g03020.1	AT3G44850.1	****	Protein kinase superfamily protein LENGTH=534	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12765g01013.1	sp|Q14692|BMS1_HUMAN	*-**	Ribosome biogenesis protein BMS1 homolog	IPR000795 (Elongation factor, GTP-binding domain), IPR007034 (Ribosome biogenesis protein BMS1/TSR1, C-terminal), IPR012948 (AARP2CN), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR030387 (Bms1/Tsr1-type G domain)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005634 (nucleus), GO:0042254 (ribosome biogenesis)
Niben101Scf03295g07001.1	sp|Q9SSA7|GLIP5_ARATH	***-	GDSL esterase/lipase 5	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf05131g00001.1	AT1G29500.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00466g01012.1	gb|KEH39256.1|	*-*-	F-box/FBD/LRR protein [Medicago truncatula]		
Niben101Scf04473g14019.1	ref|NP_001046922.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf09903g00003.1	sp|A5PK19|MET13_BOVIN	*-**	Methyltransferase-like protein 13	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf01519g10007.1			Unknown protein		
Niben101Scf14958g00035.1	AT3G48710.1	*-*-	DEK domain-containing chromatin associated protein LENGTH=462	IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding)
Niben101Scf03839g11002.1	sp|Q3EBY8|FB111_ARATH	--*-	F-box protein		
Niben101Scf01463g06001.1	sp|Q27GI3|NAT6_ARATH	****	Nucleobase-ascorbate transporter 6	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf28230g00019.1	sp|P24806|XTH24_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 24	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf20728g00002.1	sp|Q8LPR5|TCP4_ARATH	*-*-	Transcription factor TCP4	IPR005333 (Transcription factor, TCP)	
Niben101Scf04384g02013.1	sp|P43309|PPO_MALDO	*-**	Polyphenol oxidase, chloroplastic	IPR008922 (Uncharacterised domain, di-copper centre)	GO:0004097 (catechol oxidase activity), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05080g01015.1	sp|Q5PNS0|Y3228_ARATH	*-*-	PHD finger protein	IPR001025 (Bromo adjacent homology (BAH) domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00254g01002.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03221g00003.1			Unknown protein		
Niben101Scf10213g00009.1			Unknown protein		
Niben101Scf15817g00020.1	sp|Q70XZ6|ATPB_AMBTC	*-**	ATP synthase subunit beta, chloroplastic	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR020547 (ATPase, F1 complex, delta/epsilon subunit, C-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf05737g00022.1	gb|AET00442.2|	***-	lipocalin-like domain protein [Medicago truncatula]	IPR011038 (Calycin-like)	
Niben101Scf07652g02015.1	sp|Q67ZE1|HSDD2_ARATH	****	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2	IPR003388 (Reticulon), IPR016040 (NAD(P)-binding domain)	GO:0003854 (3-beta-hydroxy-delta5-steroid dehydrogenase activity), GO:0006694 (steroid biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf03309g00006.1	sp|A0KZ20|RRF_SHESA	--*-	Ribosome-recycling factor		
Niben101Scf00442g06002.1	sp|E9QAU8|RN165_MOUSE	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf38997g00004.1	sp|Q9M9W1|RL222_ARATH	***-	60S ribosomal protein L22-2	IPR002671 (Ribosomal protein L22e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00634g04009.1	sp|Q834X8|VATB_ENTFA	*-**	V-type ATP synthase beta chain	IPR004100 (ATPase, F1 complex alpha/beta subunit, N-terminal domain)	GO:0015992 (proton transport), GO:0046034 (ATP metabolic process)
Niben101Scf04418g12003.1	sp|Q6UNT2|RL5_CUCSA	***-	60S ribosomal protein L5	IPR005484 (Ribosomal protein L18/L5), IPR025607 (Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0008097 (5S rRNA binding)
Niben101Scf00941g06015.1	AT4G08540.1	***-	DNA-directed RNA polymerase II protein LENGTH=473	IPR018791 (UV radiation resistance protein/autophagy-related protein 14)	GO:0010508 (positive regulation of autophagy)
Niben101Scf01764g02004.1	sp|Q460N3|PAR15_HUMAN	--*-	Poly [ADP-ribose] polymerase 15	IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR022003 (RST domain of plant C-terminal)	GO:0003950 (NAD+ ADP-ribosyltransferase activity)
Niben101Scf00854g02043.1			Unknown protein		
Niben101Scf10235g01001.1			Unknown protein		
Niben101Scf03275g00020.1	gb|KDQ30725.1|	-**-	NADH dehydrogenase 1 beta subcomplex, Ndufb11 subunit [Pleurotus ostreatus PC15]	IPR019329 (NADH:ubiquinone oxidoreductase, ESSS subunit)	
Niben101Scf01782g11003.1	sp|Q05B92|TFE3_BOVIN	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01475g00004.1	AT1G22400.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06971g00007.1	sp|Q9SHZ3|NAT1_ARATH	****	Nucleobase-ascorbate transporter 1	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf23876g00005.1	emb|CDY65519.1|	***-	BnaA09g54290D [Brassica napus]		
Niben101Scf00414g09001.1	sp|Q2NFZ6|RPOD_METST	****	DNA-directed RNA polymerase subunit D	IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf08776g02028.1	sp|Q9P6I1|UBC16_SCHPO	***-	Ubiquitin-conjugating enzyme E2 16	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf16082g00007.1	sp|Q40412|ABA2_NICPL	****	Zeaxanthin epoxidase, chloroplastic	IPR008984 (SMAD/FHA domain), IPR017079 (Zeaxanthin epoxidase)	GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0009507 (chloroplast), GO:0009540 (zeaxanthin epoxidase [overall] activity), GO:0009688 (abscisic acid biosynthetic process), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00953g04021.1	emb|CDY49675.1|	*-*-	BnaC03g61240D [Brassica napus]		
Niben101Scf11724g06004.1	ref|XP_007045619.1|	*-*-	Ras-related small GTP-binding family protein, putative [Theobroma cacao] gb|EOY01451.1| Ras-related small GTP-binding family protein, putative [Theobroma cacao]		
Niben101Scf07792g02034.1	sp|Q94KB7|MLO6_ARATH	***-	MLO-like protein 6	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf00425g03018.1	tpg|DAA42477.1|	*-*-	TPA: hypothetical protein ZEAMMB73_628319 [Zea mays]	IPR019007 (WW domain binding protein 11)	GO:0006396 (RNA processing)
Niben101Scf03302g02009.1	sp|O64825|LYK4_ARATH	*-*-	LysM domain receptor-like kinase 4		
Niben101Scf03018g21004.1	sp|Q3ZBV9|DHR11_BOVIN	****	Dehydrogenase/reductase SDR family member 11	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf04107g01003.1	ref|NP_001051216.1|	*-*-	product [Oryza sativa Japonica Group]	IPR005134 (Uncharacterised protein family UPF0114)	
Niben101Scf07087g00014.1	AT3G06790.1	*-*-	plastid developmental protein DAG, putative LENGTH=244		
Niben101Scf03171g02003.1	emb|CDY25001.1|	--*-	BnaC02g40070D [Brassica napus]		
Niben101Scf01825g02015.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf00180g11028.1	AT1G61050.1	***-	alpha 1,4-glycosyltransferase family protein LENGTH=435	IPR007577 (Glycosyltransferase, DXD sugar-binding motif), IPR007652 (Alpha 1,4-glycosyltransferase domain), IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf07937g01004.1	sp|B2UDA1|BIOB_RALPJ	****	Biotin synthase	IPR002684 (Biotin synthase/Biotin biosynthesis bifunctional protein BioAB), IPR007197 (Radical SAM), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004076 (biotin synthase activity), GO:0009102 (biotin biosynthetic process), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf05720g05003.1	dbj|BAE98988.1|	*-**	beta-1,4-N-acetylglucosaminyltransferase like protein [Arabidopsis thaliana]	IPR006813 (Glycosyl transferase, family 17)	GO:0003830 (beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity), GO:0006487 (protein N-linked glycosylation), GO:0016020 (membrane)
Niben101Scf03104g03002.1	dbj|BAM48559.1|	*-*-	tobamovirus multiplication 1 [Solanum habrochaites]	IPR009457 (Domain of unknown function DUF1084)	
Niben101Scf04190g01009.1			Unknown protein		
Niben101Scf03906g03007.1	emb|CDY61171.1|	***-	BnaC06g07410D [Brassica napus]		
Niben101Scf16148g01017.1	sp|Q03066|RPSC_NOSS1	*-**	RNA polymerase sigma-C factor	IPR014284 (RNA polymerase sigma-70 like domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Scf04113g12015.1	sp|Q58FS3|RAD_ANTMA	--*-	Transcription factor RADIALIS		
Niben101Scf08574g00002.1	sp|Q8T135|KIF5_DICDI	*-**	Kinesin-related protein 5	IPR001752 (Kinesin motor domain), IPR010544 (Kinesin-related conserved domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf06621g02013.1	sp|Q5JSH3|WDR44_HUMAN	--*-	WD repeat-containing protein 44	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01884g00008.1	AT2G02880.1	*-*-	mucin-related LENGTH=314	IPR021036 (Ribosomal protein S35, mitochondrial)	
Niben101Scf01023g02001.1	AT1G03687.1	*-*-	DTW domain-containing protein LENGTH=381		
Niben101Scf05749g02016.1	AT4G33905.1	****	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein LENGTH=261	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf02160g06058.1			Unknown protein		
Niben101Scf02562g02009.1	sp|Q9LSY4|U71B8_ARATH	*-*-	UDP-glycosyltransferase 71B8	IPR007656 (Zein-binding domain)	
Niben101Scf00854g07028.1	sp|B2S7M5|ATPA_BRUA1	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf03973g00007.1	sp|Q9FFC6|GDL78_ARATH	****	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016298 (lipase activity), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01239g01008.1	sp|Q5U5C5|PRP31_XENLA	--*-	U4/U6 small nuclear ribonucleoprotein Prp31	IPR002687 (Nop domain), IPR027105 (U4/U6 small nuclear ribonucleoprotein Prp31)	
Niben101Scf00792g04004.1	sp|Q9ZF99|MDH_AQUAR	*-**	Malate dehydrogenase	IPR010945 (Malate dehydrogenase, type 2)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf02802g00005.1	ref|XP_003588839.1|	*-*-	F-box/FBD/LRR-repeat protein [Medicago truncatula]		
Niben101Scf05077g00027.1	AT3G01830.1	****	Calcium-binding EF-hand family protein LENGTH=146	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf09640g00014.1	AT5G32440.3	***-	Ubiquitin system component Cue protein LENGTH=265		
Niben101Scf08533g01026.1	sp|Q9I969|TXLNB_CHICK	*-*-	Beta-taxilin	IPR026183 (Taxilin family)	GO:0019905 (syntaxin binding)
Niben101Scf00553g04003.1			Unknown protein		
Niben101Scf03674g00005.1	sp|B5R809|RIHA_SALG2	***-	Pyrimidine-specific ribonucleoside hydrolase RihA	IPR001910 (Inosine/uridine-preferring nucleoside hydrolase domain), IPR023186 (Inosine/uridine-preferring nucleoside hydrolase)	
Niben101Scf01862g02012.1	AT1G43580.1	***-	Sphingomyelin synthetase family protein LENGTH=421	IPR025749 (Sphingomyelin synthase-like domain)	
Niben101Scf09433g01025.1	sp|Q9WTY1|PDCD7_MOUSE	*-*-	Programmed cell death protein 7		
Niben101Scf18745g01012.1	ref|XP_002515460.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF46909.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01517g08027.1	ref|WP_013033590.1|	--*-	stage II sporulation protein E [Nitr [Nitrosococcus halophilus Nc 4]		
Niben101Scf00120g01009.1			Unknown protein		
Niben101Scf05349g01042.1	sp|C3JYJ9|CLPX_PSEFS	*-**	ATP-dependent Clp protease ATP-binding subunit ClpX	IPR003959 (ATPase, AAA-type, core), IPR004487 (Clp protease, ATP-binding subunit ClpX), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf00854g04013.1			Unknown protein		
Niben101Scf02714g07006.1	sp|Q8VYE4|PTR12_ARATH	***-	Protein NRT1/ PTR FAMILY 4.5	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf04237g00001.1	sp|Q9Z266|SNAPN_MOUSE	-**-	SNARE-associated protein Snapin	IPR028119 (Snapin/Pallidin/Snn1)	GO:0006886 (intracellular protein transport), GO:0031083 (BLOC-1 complex)
Niben101Scf03539g00001.1			Unknown protein		
Niben101Ctg13992g00003.1	sp|Q3ZBR5|TTC1_BOVIN	*-*-	Tetratricopeptide repeat protein 1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02011g04003.1	sp|P56986|GALE_NEIMC	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005886 (UDP-glucose 4-epimerase GalE), IPR025308 (UDP-glucose 4-epimerase C-terminal domain)	GO:0003824 (catalytic activity), GO:0003978 (UDP-glucose 4-epimerase activity), GO:0006012 (galactose metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf03644g02007.1	sp|Q0WWQ1|ATG3_ARATH	***-	Autophagy-related protein 3	IPR007134 (Autophagy-related protein 3, N-terminal), IPR007135 (Autophagy-related protein 3), IPR019461 (Autophagy-related protein 3, C-terminal)	
Niben101Scf00320g02002.1	AT5G12040.1	*-*-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein LENGTH=369	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf03929g05002.1	sp|Q01440|GTR1_LEIDO	*-**	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04104g06002.1			Unknown protein		
Niben101Scf04108g00010.1	AT2G43290.1	****	Calcium-binding EF-hand family protein LENGTH=215	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00739g02020.1	sp|Q02921|NO93_SOYBN	***-	Early nodulin-93	IPR005050 (Early nodulin 93 ENOD93 protein)	
Niben101Scf06131g00004.1	sp|P93847|RL10_SOLME	***-	60S ribosomal protein L10	IPR001197 (Ribosomal protein L10e), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf13643g02003.1	sp|P19595|UGPA_SOLTU	--*-	UTP--glucose-1-phosphate uridylyltransferase	IPR007512 (Protein of unknown function DUF543)	
Niben101Scf00799g03004.1	sp|Q9SH60|PP103_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01606g00003.1	ref|NP_001190042.1|	--*-	protein RESPONSE TO LOW SULFUR 1 [Arabidopsis thaliana] gb|AEE78560.1| response to low sulfur 1 protein [Arabidopsis thaliana]		
Niben101Ctg11493g00003.1	sp|Q9CQE7|ERGI3_MOUSE	*-*-	Endoplasmic reticulum-Golgi intermediate compartment protein 3		
Niben101Scf04398g06018.1	sp|O27123|RPOB2_METTH	****	DNA-directed RNA polymerase subunit B''	IPR007644 (RNA polymerase, beta subunit, protrusion), IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf06465g00001.1	sp|P96556|TRPE_ARTGO	*-*-	Anthranilate synthase component 1	IPR005802 (Para-aminobenzoate synthase, component I), IPR029062 (Class I glutamine amidotransferase-like)	GO:0009058 (biosynthetic process), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0016833 (oxo-acid-lyase activity)
Niben101Scf05824g05002.1	ref|XP_002515417.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF46866.1| conserved hypothetical protein [Ricinus communis]		
Niben101Ctg04081g00002.1	sp|Q9SA37|CHX1_ARATH	*-**	Cation/H(+) antiporter 1	IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf06750g00011.1	sp|Q8VY01|SCP46_ARATH	****	Serine carboxypeptidase-like 46	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02427g03006.1	AT1G27700.1	***-	Syntaxin/t-SNARE family protein LENGTH=297	IPR010989 (t-SNARE)	GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport), GO:0048193 (Golgi vesicle transport)
Niben101Scf00426g01012.1			Unknown protein		
Niben101Scf00290g01017.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00783g05022.1	sp|Q6YC49|S35A3_BOVIN	****	UDP-N-acetylglucosamine transporter	IPR004689 (UDP-galactose transporter), IPR007271 (Nucleotide-sugar transporter)	GO:0000139 (Golgi membrane), GO:0005338 (nucleotide-sugar transmembrane transporter activity), GO:0005351 (sugar:proton symporter activity), GO:0008643 (carbohydrate transport), GO:0015780 (nucleotide-sugar transport), GO:0016021 (integral component of membrane)
Niben101Scf22318g00006.1	sp|P39958|GDI1_YEAST	***-	Rab GDP-dissociation inhibitor	IPR018203 (GDP dissociation inhibitor)	
Niben101Scf03036g07012.1	sp|Q9FFD5|RIC4_ARATH	-**-	CRIB domain-containing protein RIC4	IPR000095 (CRIB domain)	
Niben101Scf00665g00014.1	sp|Q9QYK7|RNF11_MOUSE	*-*-	RING finger protein 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03607g01005.1	sp|Q39090|UFO_ARATH	***-	Protein UNUSUAL FLORAL ORGANS	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf03852g04001.1	ref|YP_002720156.1|	*-*-	ORF126 [Jatropha curcas] ref|YP_002720173.1| ORF126 [Jatropha curcas] gb|ACN72735.1| ORF126 [Jatropha curcas] gb|ACN72751.1| ORF126 [Jatropha curcas]		
Niben101Scf04107g01001.1	AT5G42660.1	***-	Protein of unknown function (DUF616) LENGTH=463	IPR006852 (Protein of unknown function DUF616)	
Niben101Scf00974g01015.1			Unknown protein		
Niben101Scf09044g01002.1	sp|Q25AG5|ERG3_ORYSI	*-*-	Elicitor-responsive protein 3	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf04260g03004.1	sp|Q8LGN0|GLR27_ARATH	****	Glutamate receptor 2.7	IPR017103 (Ionotropic glutamate receptor, plant), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf01991g02020.1	emb|CDI53211.1|	*-*-	conserved hypothetical protein [Melanopsichium pennsylvanicum 4]		
Niben101Scf18902g00009.1	sp|Q39111|GAOX2_ARATH	***-	Gibberellin 20 oxidase 2	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02062g09011.1	sp|Q8IZC7|ZN101_HUMAN	--*-	Zinc finger protein 101	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR029789 (Protein TRANSPARENT TESTA 1 like)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf04406g04007.1	sp|Q9M2Z4|MSBP2_ARATH	*-**	Membrane steroid-binding protein 2	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf07428g02023.1	sp|Q9SJN2|PP187_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf11709g01031.1	sp|Q6ID77|MED11_ARATH	****	Mediator of RNA polymerase II transcription subunit 11	IPR019404 (Mediator complex, subunit Med11)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf08564g04004.1	ref|XP_007022254.1|	***-	2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 2 [Theobroma cacao] gb|EOY13779.1| 2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 2 [Theobroma cacao]		
Niben101Scf04300g00009.1	AT5G13300.1	*-**	ARF GTPase-activating protein LENGTH=827	IPR000008 (C2 domain), IPR001164 (Arf GTPase activating protein)	GO:0005515 (protein binding), GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf02513g04011.1	AT3G55570.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=109		
Niben101Scf06613g05002.1			Unknown protein		
Niben101Scf05261g00003.1	AT4G24500.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=319	IPR028265 (M-phase-specific PLK1-interacting protein-like)	
Niben101Scf02508g04002.1	AT4G35160.1	****	O-methyltransferase family protein LENGTH=382	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf11125g00015.1			Unknown protein		
Niben101Scf07977g02009.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf05030g00003.1	AT3G17850.1	****	Protein kinase superfamily protein LENGTH=1296	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02985g00006.1			Unknown protein		
Niben101Scf05665g00013.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00472g08006.1	sp|Q65KJ5|FOSB_BACLD	-**-	Metallothiol transferase FosB	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf00854g02045.1			Unknown protein		
Niben101Scf13391g01005.1	AT5G18290.1	***-	Aquaporin-like superfamily protein LENGTH=243	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf04776g00011.1	AT4G02900.1	***-	ERD (early-responsive to dehydration stress) family protein LENGTH=785	IPR003864 (Domain of unknown function DUF221), IPR027815 (Domain of unknown function DUF4463)	GO:0016020 (membrane)
Niben101Scf02836g03007.1	sp|Q8W3Z4|CAS1_BETPL	***-	Cycloartenol synthase	IPR018333 (Squalene cyclase)	GO:0016866 (intramolecular transferase activity)
Niben101Scf02216g02012.1	sp|P84227|H32_BOVIN	***-	Histone H3.2	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf07182g04011.1	sp|Q9FG35|TBR_ARATH	*-*-	Protein trichome birefringence	IPR026057 (PC-Esterase)	
Niben101Scf08665g00004.1	sp|Q9H6P5|TASP1_HUMAN	--*-	Threonine aspartase 1	IPR000246 (Peptidase T2, asparaginase 2), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0016787 (hydrolase activity)
Niben101Scf04053g00005.1	gb|KEH33854.1|	*-*-	MADS-box transcription factor family protein [Medicago truncatula]		
Niben101Scf13594g03005.1	gb|KEH26878.1|	--*-	GRAM domain protein/ABA-responsive-like protein [Medicago truncatula]		
Niben101Scf03223g00002.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02072g00017.1	sp|Q03164|KMT2A_HUMAN	*-**	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR003616 (Post-SET domain), IPR006560 (AWS domain), IPR025787 (Histone-lysine N-methyltransferase, SET2, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0018024 (histone-lysine N-methyltransferase activity)
Niben101Scf02459g08001.1	sp|Q9T072|BH025_ARATH	*-*-	Transcription factor bHLH25	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf09221g00011.1	AT5G11470.1	*-*-	bromo-adjacent homology (BAH) domain-containing protein LENGTH=757	IPR001025 (Bromo adjacent homology (BAH) domain)	GO:0003682 (chromatin binding)
Niben101Scf02814g04007.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02509g05007.1	sp|Q5SPX3|RN215_MOUSE	--*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00082g03004.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf06155g01028.1	sp|Q9C7A2|Y3236_ARATH	--*-	Ankyrin repeat-containing protein	IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	
Niben101Scf03268g06002.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf06081g02026.1	gb|AHG97393.1|	****	C-repeat-binding transcription factor 3 [Vitis vinifera]	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00714g00007.1	AT5G17530.3	***-	phosphoglucosamine mutase family protein LENGTH=614	IPR005841 (Alpha-D-phosphohexomutase superfamily)	GO:0005975 (carbohydrate metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf08203g00021.1	sp|Q6NRL1|AGAP1_XENLA	*-**	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf00461g04004.1	sp|Q99K82|SMOX_MOUSE	***-	Spermine oxidase	IPR002937 (Amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06809g00032.1	AT2G16920.1	***-	ubiquitin-conjugating enzyme 23 LENGTH=1102	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf17122g00003.1	sp|B9DHA6|RL40A_ARATH	*-*-	Ubiquitin-60S ribosomal protein L40-1	IPR001975 (Ribosomal protein L40e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03147g10015.1	sp|Q9ZW24|GSTU7_ARATH	***-	Glutathione S-transferase U7	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf00080g05002.1	sp|Q0I7R2|ATPA_SYNS3	--**	ATP synthase subunit alpha	IPR004100 (ATPase, F1 complex alpha/beta subunit, N-terminal domain), IPR023366 (ATP synthase subunit alpha-like domain)	GO:0015992 (proton transport), GO:0046034 (ATP metabolic process)
Niben101Scf01948g00006.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf03009g05007.1	gb|ADR31620.1|	***-	DUF579 protein [Populus trichocarpa]	IPR021148 (Putative polysaccharide biosynthesis protein)	
Niben101Scf02565g01007.1	sp|Q9M367|BECN1_ARATH	*-*-	Beclin-1-like protein		
Niben101Scf02929g04014.1			Unknown protein		
Niben101Scf00015g04002.1	ref|XP_003605534.1|	--*-	F-box/LRR-repeat protein [Medicago truncatula] gb|AES87731.1| F-box/RNI/FBD-like domain protein [Medicago truncatula]		
Niben101Scf07631g01006.1	gb|AFQ20269.1|	*-*-	conserved hypothetical protein [Oryza sativa Indica Group]		
Niben101Scf02050g00009.1	gb|KEH24067.1|	--*-	cactus-binding carboxy-terminal, cactin protein [Medicago truncatula]		
Niben101Scf00410g02014.1	AT4G23860.1	*-*-	PHD finger protein-related LENGTH=452	IPR003126 (Zinc finger, N-recognin), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf05468g05007.1	AT1G18160.1	*-**	Protein kinase superfamily protein LENGTH=992	IPR011009 (Protein kinase-like domain), IPR016253 (Integrin-linked protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0009966 (regulation of signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg13835g00003.1			Unknown protein		
Niben101Scf06305g01023.1	AT4G23720.1	***-	Protein of unknown function (DUF1191) LENGTH=313	IPR010605 (Protein of unknown function DUF1191)	
Niben101Scf01252g02006.1	sp|A1TLH8|DNAJ_ACIAC	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf00586g02009.1	AT2G37820.1	*-*-	Cysteine/Histidine-rich C1 domain family protein LENGTH=290		
Niben101Scf01169g04008.1	sp|Q5BBV4|EAF3_EMENI	***-	Chromatin modification-related protein eaf3	IPR008676 (MRG), IPR026541 (MRG domain)	GO:0005634 (nucleus)
Niben101Scf02594g01007.1	sp|Q9FRL3|ERDL6_ARATH	****	Sugar transporter ERD6-like 6	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf06501g00010.1	sp|A7I2X3|SURE_CAMHC	-**-	5'-nucleotidase SurE	IPR002828 (Survival protein SurE-like phosphatase/nucleotidase)	GO:0016787 (hydrolase activity)
Niben101Scf10314g04015.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf01933g04005.1	sp|Q9FM65|FLA1_ARATH	--*-	Fasciclin-like arabinogalactan protein 1		
Niben101Scf01148g02006.1	sp|Q0WRW8|B561K_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf02471g03001.1	AT2G44745.1	*-*-	WRKY family transcription factor LENGTH=218		
Niben101Scf02253g12006.1	AT2G39770.1	***-	Glucose-1-phosphate adenylyltransferase family protein LENGTH=361	IPR001451 (Bacterial transferase hexapeptide repeat), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf07576g00030.1	sp|O45379|ARL3_CAEEL	***-	ADP-ribosylation factor-like protein 3	IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf10749g00008.1	sp|Q55BI3|OTU1_DICDI	***-	Ubiquitin thioesterase OTU1	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf06078g02032.1	gb|AAF14244.1|AF110228_1	***-	nuclear RNA binding protein A [Spinacia oleracea]	IPR006861 (Hyaluronan/mRNA-binding protein), IPR019084 (Stm1, N-terminal)	
Niben101Scf12414g00010.1	AT1G02000.1	****	UDP-D-glucuronate 4-epimerase 2 LENGTH=434	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf05551g00009.1	sp|Q96499|RL44_GOSHI	***-	60S ribosomal protein L44	IPR000552 (Ribosomal protein L44e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03985g04014.1	sp|C1BK83|SEH1_OSMMO	***-	Nucleoporin seh1	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04052g01021.1			Unknown protein		
Niben101Scf10676g02001.1	gb|AAQ08670.1|	***-	maturase [Sladenia celastrifolia]	IPR000477 (Reverse transcriptase domain)	
Niben101Scf03106g01009.1	ref|XP_002520205.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF42260.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf01243g03020.1	sp|P23901|ALDR_HORVU	****	Aldose reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07247g04017.1	AT1G53130.1	***-	Stigma-specific Stig1 family protein LENGTH=168	IPR006969 (Stigma-specific protein Stig1)	
Niben101Scf19517g00019.1	sp|F4JQ95|DGK7_ARATH	****	Diacylglycerol kinase 7	IPR000756 (Diacylglycerol kinase, accessory domain), IPR001206 (Diacylglycerol kinase, catalytic domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf02041g05016.1	AT4G35560.2	*-*-	Transducin/WD40 repeat-like superfamily protein LENGTH=1050		
Niben101Scf04939g02009.1	sp|Q06RF0|MATK_JASNU	*-*-	Maturase K	IPR024942 (Maturase MatK, N-terminal domain)	
Niben101Scf00567g05001.1	ref|XP_002514553.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF47659.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05847g00011.1	sp|Q9CAM8|PP100_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08448g00008.1	sp|Q92733|PRCC_HUMAN	--*-	Proline-rich protein PRCC	IPR018800 (Proline-rich protein PRCC)	
Niben101Scf02063g02008.1	sp|Q84MB3|ACCH1_ARATH	*-*-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf10498g01021.1	AT3G20920.1	*-*-	translocation protein-related LENGTH=365		
Niben101Scf00110g04018.1	ref|WP_025942435.1|	*-*-	MULTISPECIES: oligoketide cyclase [Prochlorococcus]	IPR005031 (Streptomyces cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf05146g04012.1	gb|KEH34856.1|	*-*-	SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein [Medicago truncatula]		
Niben101Scf19155g00002.1	sp|O42993|FKBP_SCHPO	*-*-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf04382g00014.1	ref|XP_002532099.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF30289.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07623g01029.1	sp|P0DH90|FRIGI_ARATH	*-*-	Protein FRIGIDA	IPR012474 (Frigida-like)	
Niben101Scf05307g04002.1	sp|Q9FFF5|ALFL1_ARATH	***-	PHD finger protein ALFIN-LIKE 1	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR021998 (Alfin)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0042393 (histone binding)
Niben101Scf02395g00005.1	AT3G45640.1	*-**	mitogen-activated protein kinase 3 LENGTH=370	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03563g00034.1			Unknown protein	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf00298g02001.1	sp|Q6L2J1|SYY_PICTO	--**	Tyrosine--tRNA ligase	IPR002305 (Aminoacyl-tRNA synthetase, class Ic)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004830 (tryptophan-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006436 (tryptophanyl-tRNA aminoacylation)
Niben101Scf05813g03003.1	ref|XP_007047232.1|	****	EF hand calcium-binding protein family, putative [Theobroma cacao] gb|EOX91389.1| EF hand calcium-binding protein family, putative [Theobroma cacao]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03410g03002.1	sp|P10987|ACT1_DROME	***-	Actin-5C	IPR004000 (Actin family)	
Niben101Scf01854g00028.1	gb|ACG38839.1|	***-	snRK1-interacting protein 1 [Zea mays]		
Niben101Scf04477g00006.1	sp|Q9ZPE7|EXO_ARATH	*-*-	Protein EXORDIUM	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf07035g00003.1	gb|AAX38236.1|	*-*-	strictosidine synthase family protein [Brassica napus]	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf07531g00002.1	sp|Q9ZQX4|VATF_ARATH	****	V-type proton ATPase subunit F	IPR008218 (ATPase, V1 complex, subunit F)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033180 (proton-transporting V-type ATPase, V1 domain), GO:0034220 (ion transmembrane transport), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf03309g06002.1	emb|CDY10775.1|	*-*-	BnaA05g11610D [Brassica napus]		
Niben101Scf00820g00006.1			Unknown protein		
Niben101Scf08630g00004.1	AT1G01630.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=255	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf08195g07025.1	sp|Q9C7N4|GDL15_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf16806g00008.1	AT3G02540.1	*-**	Rad23 UV excision repair protein family LENGTH=419	IPR004806 (UV excision repair protein Rad23), IPR009060 (UBA-like), IPR029071 (Ubiquitin-related domain)	GO:0003684 (damaged DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006289 (nucleotide-excision repair), GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
Niben101Scf01719g02005.1	AT3G06780.1	*-*-	glycine-rich protein LENGTH=201		
Niben101Scf09010g02005.1	AT2G21270.3	****	ubiquitin fusion degradation 1 LENGTH=340	IPR004854 (Ubiquitin fusion degradation protein UFD1)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf03439g00006.1	sp|Q98TX1|THIO_OPHHA	*-*-	Thioredoxin	IPR011990 (Tetratricopeptide-like helical domain), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding), GO:0045454 (cell redox homeostasis)
Niben101Scf04993g00007.1	gb|AFW74647.1|	-**-	membrane protein [Zea mays]	IPR010580 (Stress-associated endoplasmic reticulum protein)	GO:0005783 (endoplasmic reticulum)
Niben101Scf00635g03004.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf10158g01036.1	sp|O22585|AMYB_MEDSA	****	Beta-amylase	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf02475g08021.1	sp|P06604|TBA2_DROME	*-*-	Tubulin alpha-2 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf01051g05008.1	sp|Q05085|PTR7_ARATH	***-	Protein NRT1/ PTR FAMILY 6.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf00270g05017.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04113g05022.1	sp|Q4L872|LACC_STAHJ	--*-	Tagatose-6-phosphate kinase	IPR029056 (Ribokinase-like)	
Niben101Scf04918g02009.1	gb|AAA53276.1|	****	GTP-binding protein [Pisum sativum]	IPR005690 (Chloroplast protein import component Toc86/159), IPR024283 (Domain of unknown function DUF3406, chloroplast translocase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides)
Niben101Scf03028g03022.1	sp|P51409|RM05_SOLTU	***-	60S ribosomal protein L5, mitochondrial	IPR022803 (Ribosomal protein L5 domain)	
Niben101Scf11609g04004.1	sp|Q9FUR2|IP5P2_ARATH	*-**	Type I inositol 1,4,5-trisphosphate 5-phosphatase 2	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf12321g01026.1	sp|Q6ZMY6|WDR88_HUMAN	*-*-	WD repeat-containing protein 88	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf11182g00011.1	sp|Q8LGG8|USPAL_ARATH	****	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf06248g00003.1	emb|CDY31674.1|	*-*-	BnaA05g08730D [Brassica napus]	IPR008889 (VQ)	
Niben101Scf08018g00010.1	sp|Q9ZD61|ISCU_RICPR	*-**	Iron-sulfur cluster assembly scaffold protein IscU	IPR002871 (NIF system FeS cluster assembly, NifU, N-terminal)	GO:0005506 (iron ion binding), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf10635g00002.1	sp|Q9LE73|NUDT4_ARATH	****	Nudix hydrolase 4	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf02459g03003.1	sp|Q9LZH9|RL7A2_ARATH	***-	60S ribosomal protein L7a-2	IPR001921 (Ribosomal protein L7A/L8), IPR029064 (50S ribosomal protein L30e-like)	
Niben101Scf04434g00003.1	gb|AES87033.2|	***-	DUF674 family protein [Medicago truncatula]	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf02583g05003.1	AT2G37740.1	*-*-	zinc-finger protein 10 LENGTH=304	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf05731g00008.1	sp|P0CW07|DNAJ_METMA	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf09116g01011.1	sp|A8ACD2|RL14_IGNH4	***-	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00885g14009.1	AT4G18400.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=107		
Niben101Scf02494g04003.1	sp|Q99797|MIPEP_HUMAN	****	Mitochondrial intermediate peptidase	IPR001567 (Peptidase M3A/M3B), IPR024077 (Neurolysin/Thimet oligopeptidase, domain 2), IPR024079 (Metallopeptidase, catalytic domain), IPR024080 (Neurolysin/Thimet oligopeptidase, N-terminal)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity)
Niben101Scf05226g04014.1	sp|B9SLR1|Y231_RICCO	***-	UPF0392 protein RCOM_0530710	IPR008166 (Domain of unknown function DUF23)	
Niben101Scf02394g01005.1	sp|Q9C8E7|GLR33_ARATH	*-*-	Glutamate receptor 3.3		
Niben101Scf04473g03001.1	gb|KFB86097.1|	***-	dihydrolipoamide dehydrogenase [Calothrix sp. 336/3]	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR016156 (FAD/NAD-linked reductase, dimerisation domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0016668 (oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05592g00001.1	sp|O14466|DPM1_SCHPO	***-	Dolichol-phosphate mannosyltransferase	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf02215g04006.1	sp|O64823|MCU2_ARATH	***-	Calcium uniporter protein 2, mitochondrial	IPR006769 (Coiled-coil domain containing protein 109, C-terminal)	
Niben101Scf04905g00001.1	emb|CDY27635.1|	***-	BnaA09g27720D [Brassica napus]		
Niben101Scf03674g01004.1	sp|Q8WUA4|TF3C2_HUMAN	*-*-	General transcription factor 3C polypeptide 2	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020478 (AT hook-like)	GO:0005515 (protein binding)
Niben101Scf05173g07004.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00069g14014.1	AT3G17980.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=177	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf13748g00002.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf06236g01024.1	sp|Q84W04|CNIH4_ARATH	***-	Protein cornichon homolog 4	IPR003377 (Cornichon)	GO:0016020 (membrane), GO:0035556 (intracellular signal transduction)
Niben101Scf00181g02005.1	sp|Q54CM0|PPT3_DICDI	*-**	Palmitoyl-protein thioesterase 3	IPR002472 (Palmitoyl protein thioesterase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0002084 (protein depalmitoylation), GO:0008474 (palmitoyl-(protein) hydrolase activity), GO:0098599 (palmitoyl hydrolase activity)
Niben101Scf01037g08006.1	sp|Q9ES53|UFD1_RAT	*-**	Ubiquitin fusion degradation protein 1 homolog	IPR004854 (Ubiquitin fusion degradation protein UFD1)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf02840g00002.1	AT1G26760.1	***-	SET domain protein 35 LENGTH=545	IPR001214 (SET domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00963g05007.1	sp|C1DPF6|RLMF_AZOVD	*-**	Ribosomal RNA large subunit methyltransferase F	IPR010286 (Ribosomal RNA large subunit methyltransferase F-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf31815g00001.1			Unknown protein		
Niben101Ctg07784g00001.1	sp|Q43187|IPYR_SOLTU	*-**	Soluble inorganic pyrophosphatase	IPR008162 (Inorganic pyrophosphatase)	GO:0000287 (magnesium ion binding), GO:0004427 (inorganic diphosphatase activity), GO:0005737 (cytoplasm), GO:0006796 (phosphate-containing compound metabolic process)
Niben101Scf02521g01021.1	sp|Q72HM5|RPOB_THET2	--**	DNA-directed RNA polymerase subunit beta	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf02463g00003.1	sp|Q7XWU8|EXPA1_ORYSJ	*-*-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf07070g01001.1	sp|Q2U0S9|MCD4_ASPOR	****	GPI ethanolamine phosphate transferase 1	IPR002591 (Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase), IPR007070 (GPI ethanolamine phosphate transferase 1)	GO:0003824 (catalytic activity), GO:0005789 (endoplasmic reticulum membrane), GO:0006506 (GPI anchor biosynthetic process), GO:0008152 (metabolic process), GO:0016740 (transferase activity)
Niben101Scf05220g01004.1	gb|KEH32143.1|	*-**	RING-H2 zinc finger protein [Medicago truncatula]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf00151g09004.1	sp|Q54YZ9|DHKJ_DICDI	--**	Hybrid signal transduction histidine kinase J	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf01304g06020.1	sp|Q39247|2ABB_ARATH	*-**	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	IPR000009 (Protein phosphatase 2A, regulatory subunit PR55), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0000159 (protein phosphatase type 2A complex), GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf00574g09011.1	emb|CDY20969.1|	*-*-	BnaA08g25560D [Brassica napus]	IPR022228 (Protein of unknown function DUF3755)	
Niben101Scf03455g02015.1	gb|AES90686.2|	*-*-	plant/F17J16-140 protein [Medicago truncatula]		
Niben101Scf01656g00012.1	AT3G61980.1	*-*-	serine protease inhibitor, Kazal-type family protein LENGTH=117		
Niben101Scf09310g02015.1	sp|A5PJZ2|PPM1L_BOVIN	--*-	Protein phosphatase 1L	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf01965g00011.1	sp|Q9UH99|SUN2_HUMAN	*-*-	SUN domain-containing protein 2	IPR012919 (SUN domain)	
Niben101Scf00648g00003.1	sp|A6QR46|RAB6B_BOVIN	***-	Ras-related protein Rab-6B	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf08516g00026.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05764g04017.1	sp|Q0STS9|MIAB_CLOPS	***-	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	IPR007197 (Radical SAM), IPR023970 (Methylthiotransferase/radical SAM-type protein)	GO:0003824 (catalytic activity), GO:0009451 (RNA modification), GO:0016740 (transferase activity), GO:0043412 (macromolecule modification), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf03893g02006.1	AT5G13020.1	***-	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein LENGTH=397	IPR005491 (EMSY N-terminal)	
Niben101Scf03643g09028.1			Unknown protein		
Niben101Scf00841g02019.1	emb|CDY43591.1|	*-*-	BnaC09g17300D [Brassica napus]	IPR026960 (Reverse transcriptase zinc-binding domain)	
Niben101Scf08280g03015.1	sp|Q8VWI1|ERD2B_ARATH	*-**	ER lumen protein-retaining receptor B	IPR000133 (ER lumen protein retaining receptor)	GO:0006621 (protein retention in ER lumen), GO:0016021 (integral component of membrane), GO:0046923 (ER retention sequence binding)
Niben101Scf01234g00007.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00159g06003.1	sp|Q9SJ74|B561G_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf08196g01005.1	sp|B4U7M4|HIS6_HYDS0	--*-	Imidazole glycerol phosphate synthase subunit HisF	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf18106g00001.1	sp|Q8TV07|NTPA_METKA	***-	Non-canonical purine NTP pyrophosphatase	IPR029001 (Inosine triphosphate pyrophosphatase-like)	GO:0009143 (nucleoside triphosphate catabolic process), GO:0016787 (hydrolase activity), GO:0047429 (nucleoside-triphosphate diphosphatase activity)
Niben101Scf00949g05002.1			Unknown protein		
Niben101Scf05430g01003.1	sp|Q2QXB2|TLP14_ORYSJ	***-	Tubby-like F-box protein 14	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf02828g02019.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf05688g08002.1	AT1G79550.1	****	phosphoglycerate kinase LENGTH=401	IPR001576 (Phosphoglycerate kinase)	GO:0004618 (phosphoglycerate kinase activity), GO:0006096 (glycolytic process)
Niben101Scf01704g01007.1	sp|Q800K6|TOB1A_XENLA	*-*-	DNA topoisomerase 2-binding protein 1-A	IPR001357 (BRCT domain)	
Niben101Scf30670g00003.1	gb|AES66960.2|	***-	DUF1685 family protein [Medicago truncatula]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf06163g01019.1	emb|CDY45799.1|	*-*-	BnaC03g16220D [Brassica napus]		
Niben101Scf06019g01028.1	sp|P13554|PSBE_PEA	*-*-	Cytochrome b559 subunit alpha	IPR013082 (Photosystem II cytochrome b559, alpha subunit, lumenal region)	GO:0009523 (photosystem II), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf06958g01001.1	emb|CDY30899.1|	***-	BnaC09g15070D [Brassica napus]	IPR007679 (Protein of unknown function DUF569), IPR008999 (Actin cross-linking)	
Niben101Scf00428g05013.1	sp|Q96499|RL44_GOSHI	***-	60S ribosomal protein L44	IPR000552 (Ribosomal protein L44e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01818g05006.1	sp|Q9CZD3|SYG_MOUSE	****	Glycine--tRNA ligase	IPR009068 (S15/NS1, RNA-binding), IPR027031 (Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004820 (glycine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006426 (glycyl-tRNA aminoacylation)
Niben101Scf09696g01124.1			Unknown protein		
Niben101Scf02359g00007.1	ref|XP_007046059.1|	--*-	RING/U-box superfamily protein, putative isoform 2 [Theobroma cacao] gb|EOY01891.1| RING/U-box superfamily protein, putative isoform 2 [Theobroma cacao]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00700g09001.1	sp|Q43046|COMT1_POPKI	****	Caffeic acid 3-O-methyltransferase 1	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf03028g01016.1	AT2G22125.1	****	binding LENGTH=2150	IPR000008 (C2 domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02159g00001.1	sp|Q5F3K4|WDR48_CHICK	*-*-	WD repeat-containing protein 48	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf09197g00003.1	sp|Q5XIH0|MAF1_RAT	****	Repressor of RNA polymerase III transcription MAF1 homolog	IPR015257 (Repressor of RNA polymerase III transcription  Maf1)	GO:0016480 (negative regulation of transcription from RNA polymerase III promoter)
Niben101Scf06432g00001.1	AT3G05550.1	***-	Hypoxia-responsive family protein LENGTH=97	IPR007667 (Hypoxia induced protein, domain)	
Niben101Scf03104g03003.1	sp|Q402F4|TOM1_TOBAC	***-	Tobamovirus multiplication protein 1	IPR009457 (Domain of unknown function DUF1084)	
Niben101Scf02763g05022.1	sp|Q14166|TTL12_HUMAN	*-*-	Tubulin--tyrosine ligase-like protein 12	IPR004344 (Tubulin-tyrosine ligase/Tubulin polyglutamylase)	GO:0006464 (cellular protein modification process)
Niben101Scf00985g06016.1	AT2G39120.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=387	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf06395g01007.1	ref|WP_026357280.1|	****	methyltransferase [Mycobacterium sp. 141]	IPR007213 (Leucine carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf01534g03004.1	sp|Q93ZB7|GTE11_ARATH	--*-	Transcription factor GTE11		
Niben101Scf00887g01007.1	sp|Q7XSA2|AGO1B_ORYSJ	***-	Protein argonaute 1B	IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785), IPR024357 (Argonaut, glycine-rich domain)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf06668g03002.1	gb|ACG28074.1|	***-	CHCH domain containing protein [Zea mays]	IPR009069 (Cysteine alpha-hairpin motif superfamily)	
Niben101Scf02680g00003.1	sp|P38389|SC61B_ARATH	*-*-	Protein transport protein Sec61 subunit beta	IPR016482 (Protein transport protein SecG/Sec61-beta/Sbh1)	
Niben101Scf00052g09016.1	sp|A2Q898|MCR1_ASPNC	--*-	NADH-cytochrome b5 reductase 2		
Niben101Scf01718g09027.1	AT4G31170.1	*-**	Protein kinase superfamily protein LENGTH=412	IPR002912 (ACT domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01115g02013.1			Unknown protein	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf04287g05014.1	sp|O58321|PCP_PYRHO	****	Pyrrolidone-carboxylate peptidase	IPR016125 (Peptidase C15, pyroglutamyl peptidase I-like)	GO:0005829 (cytosol), GO:0006508 (proteolysis), GO:0016920 (pyroglutamyl-peptidase activity)
Niben101Scf13742g00007.1	sp|Q84Y01|ITPK1_MAIZE	****	Inositol-tetrakisphosphate 1-kinase 1	IPR008656 (Inositol-tetrakisphosphate 1-kinase)	GO:0000287 (magnesium ion binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0032957 (inositol trisphosphate metabolic process), GO:0046872 (metal ion binding), GO:0047325 (inositol tetrakisphosphate 1-kinase activity), GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity), GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
Niben101Scf08574g00001.1	sp|Q6NKU9|TI223_ARATH	***-	Mitochondrial import inner membrane translocase subunit TIM22-3	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Scf02608g03021.1	sp|Q40459|PSBO_TOBAC	****	Oxygen-evolving enhancer protein 1, chloroplastic	IPR002628 (Photosystem II PsbO, manganese-stabilising), IPR011250 (Outer membrane protein/outer membrane enzyme PagP , beta-barrel)	GO:0005509 (calcium ion binding), GO:0009279 (cell outer membrane), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019898 (extrinsic component of membrane), GO:0042549 (photosystem II stabilization)
Niben101Scf21348g00009.1	sp|Q9LJB7|BBX32_ARATH	*-**	B-box zinc finger protein 32	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf02180g00010.1	sp|P49637|R27A3_ARATH	--*-	60S ribosomal protein L27a-3		
Niben101Scf04582g01006.1	sp|Q9SJM6|SAP4_ARATH	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 4	IPR000058 (Zinc finger, AN1-type), IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf01664g03004.1	sp|Q05B78|ZFY21_BOVIN	*-*-	Zinc finger FYVE domain-containing protein 21	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0046872 (metal ion binding)
Niben101Scf01250g02007.1	sp|P0CL50|OTSB_SALTY	--**	Trehalose-phosphate phosphatase	IPR003337 (Trehalose-phosphatase), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process)
Niben101Scf05056g00021.1			Unknown protein		
Niben101Scf03930g03019.1	sp|P35336|PGLR_ACTDE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02124g01029.1			Unknown protein		
Niben101Scf05618g03009.1	ref|NP_172824.3|	****	ph kinase from Arabidopsis thaliana gb|Z99707 [Arabidopsis thaliana] gb|AEE29057.1| phospholipase C/ phosphoric diester hydrolase [Arabidopsis thaliana]	IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain)	GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Scf17701g01017.1	sp|Q7XA78|D27_ARATH	***-	Beta-carotene isomerase D27, chloroplastic	IPR025114 (Domain of unknown function DUF4033)	
Niben101Scf04016g01003.1			Unknown protein		
Niben101Scf00239g08004.1			Unknown protein		
Niben101Scf08597g00010.1	sp|Q9LVE0|PTR33_ARATH	***-	Protein NRT1/ PTR FAMILY 6.4	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf10916g00002.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf01826g00001.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00157g06001.1	AT4G21750.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=762	IPR002913 (START domain)	GO:0008289 (lipid binding)
Niben101Scf00428g03010.1	sp|Q8L8Q3|LBD25_ARATH	***-	LOB domain-containing protein 25	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf04396g04012.1	ref|WP_019067954.1|	*-*-	methyltransferase [Streptomyces sp. R1-NS-10]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf02635g05003.1	sp|Q976A6|RPOA2_SULTO	*-**	DNA-directed RNA polymerase subunit A''	IPR015700 (DNA-directed RNA polymerase III subunit RPC1)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0032549 (ribonucleoside binding)
Niben101Scf05698g00008.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05989g00010.1	gb|ACE98153.1|	***-	expressed protein [Populus tremula]		
Niben101Scf08308g04018.1	sp|Q32PP1|CE045_DANRE	*-*-	UPF0544 protein C5orf45 homolog		
Niben101Ctg16115g00003.1	sp|Q9C5T4|WRK18_ARATH	****	WRKY transcription factor 18	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02351g02007.1	AT4G34980.1	*-*-	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf05733g00007.1	ref|XP_003616141.1|	*-**	E3 ubiquitin-protein ligase SINA-like protein [Medicago truncatula] gb|AES99099.1| seven in absentia family protein [Medicago truncatula]	IPR008974 (TRAF-like), IPR009071 (High mobility group box domain), IPR019557 (Aminotransferase-like, plant mobile domain)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf02392g00001.1	sp|Q07442|BDF2_YEAST	*-*-	Bromodomain-containing factor 2	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf01847g05003.1	AT2G16630.1	*-*-	Pollen Ole e 1 allergen and extensin family protein LENGTH=359	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf02792g02007.1			Unknown protein		
Niben101Scf02222g00018.1	sp|Q9SIS3|MA656_ARATH	*-*-	65-kDa microtubule-associated protein 6		
Niben101Scf00375g00004.1	gb|KEH24820.1|	-**-	Nodule Cysteine-Rich (NCR) secreted peptide [Medicago truncatula]		
Niben101Scf26117g00001.1	emb|CDY70616.1|	***-	BnaA03g54770D [Brassica napus]		
Niben101Scf02669g02014.1	sp|P38569|PGM_KOMXY	--*-	Phosphoglucomutase	IPR016055 (Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III)	GO:0005975 (carbohydrate metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf01933g12002.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf00372g01009.1	AT3G19100.1	****	Protein kinase superfamily protein LENGTH=599	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02232g05001.1	sp|Q8L868|E1311_ARATH	***-	Glucan endo-1,3-beta-glucosidase 11	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02379g03015.1	sp|Q75KA9|CCS1_ORYSJ	*-*-	Cytochrome c biogenesis protein CCS1, chloroplastic		
Niben101Scf00854g01025.1	sp|Q7YJV8|PSBE_CALFG	*-*-	Cytochrome b559 subunit alpha	IPR013081 (Photosystem II cytochrome b559, N-terminal)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding)
Niben101Scf02929g01027.1			Unknown protein		
Niben101Scf09030g02001.1			Unknown protein		
Niben101Scf39170g00001.1	AT1G28960.1	*-**	nudix hydrolase homolog 15 LENGTH=293	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf07563g02015.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR000118 (Granulin), IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf08533g02007.1	sp|Q8R0A0|T2FB_MOUSE	*-**	General transcription factor IIF subunit 2	IPR003196 (Transcription initiation factor IIF, beta subunit)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0005674 (transcription factor TFIIF complex), GO:0006367 (transcription initiation from RNA polymerase II promoter)
Niben101Scf02508g01001.1	sp|P42784|CTPA_SYNP2	***-	Carboxyl-terminal-processing protease	IPR004447 (C-terminal-processing peptidase S41A), IPR029045 (ClpP/crotonase-like domain)	GO:0005515 (protein binding), GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf07720g00031.1	sp|Q6CC82|NTF2_YARLI	*-**	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf11108g02012.1	AT5G13490.1	***-	ADP/ATP carrier 2 LENGTH=385	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf10031g07003.1	tpg|DAA58261.1|	-***	TPA: 3-5 exonuclease/ nucleic acid binding protein [Zea mays]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf05019g00008.1	AT1G07730.2	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=389	IPR004265 (Plant disease resistance response protein)	
Niben101Scf03189g02012.1	sp|Q9JJQ0|PIGB_MOUSE	***-	GPI mannosyltransferase 3	IPR005599 (GPI mannosyltransferase)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf03735g03013.1	emb|CDY56587.1|	***-	BnaC07g48120D [Brassica napus]		
Niben101Scf07261g01013.1	AT1G29300.1	***-	Plant protein of unknown function (DUF641) LENGTH=459	IPR006943 (Domain of unknown function DUF641, plant)	
Niben101Scf01438g09020.1	AT5G43470.1	*-*-	Disease resistance protein (CC-NBS-LRR class) family LENGTH=908	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf02074g04140.1	ref|XP_002536345.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26037.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf25021g00011.1			Unknown protein		
Niben101Scf02835g00012.1	sp|Q9SM50|HY5_SOLLC	--**	Transcription factor HY5	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01571g00006.1	AT1G48430.1	*-**	Dihydroxyacetone kinase LENGTH=593	IPR004006 (Dak kinase)	GO:0004371 (glycerone kinase activity), GO:0006071 (glycerol metabolic process)
Niben101Scf08512g00006.1	sp|Q9FRS6|PXL1_ARATH	--*-	Leucine-rich repeat receptor-like protein kinase PXL1		
Niben101Scf07423g04011.1	sp|P0CT31|EF1A1_DICDI	****	Elongation factor 1-alpha	IPR004539 (Translation elongation factor EF1A, eukaryotic/archaeal), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005737 (cytoplasm), GO:0006414 (translational elongation)
Niben101Scf04653g01012.1	sp|P43157|CYSP_SCHJA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00466g01013.1	sp|Q945M1|NDUB9_ARATH	*-*-	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9		
Niben101Scf00770g02007.1	ref|YP_006291826.1|	***-	orf42 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81180.1| orf42 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf00611g11027.1	sp|Q6WLH4|SMH3_MAIZE	***-	Single myb histone 3	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf03450g00014.1	sp|Q9XHP0|11S2_SESIN	***-	11S globulin seed storage protein 2	IPR006044 (11-S seed storage protein, plant)	GO:0045735 (nutrient reservoir activity)
Niben101Scf03221g00002.1			Unknown protein		
Niben101Scf10627g02006.1	sp|Q1PFH7|PPR89_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06238g01004.1	sp|Q71V09|H4_CAPAN	***-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly), GO:0046982 (protein heterodimerization activity)
Niben101Scf02581g04013.1	sp|Q2HXL0|RBOHC_SOLTU	****	Respiratory burst oxidase homolog protein C	IPR000778 (Cytochrome b245, heavy chain), IPR011992 (EF-hand domain pair), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0004601 (peroxidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0050664 (oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00338g10011.1	AT4G39630.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=233		
Niben101Scf05290g01012.1	sp|Q9LDG2|TBL10_ARATH	***-	Protein trichome birefringence-like 10	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf01941g00002.1	ref|XP_007025667.1|	***-	Tetratricopeptide repeat-like superfamily protein, putative isoform 2 [Theobroma cacao] gb|EOY28289.1| Tetratricopeptide repeat-like superfamily protein, putative isoform 2 [Theobroma cacao]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02215g00005.1	sp|Q9Y6U7|RN215_HUMAN	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Ctg01888g00001.1	sp|Q9QZD4|XPF_MOUSE	*-**	DNA repair endonuclease XPF	IPR011335 (Restriction endonuclease  type II-like)	GO:0003677 (DNA binding), GO:0004518 (nuclease activity), GO:0006259 (DNA metabolic process)
Niben101Scf01764g02003.1	sp|Q09903|DRS1_SCHPO	*-**	ATP-dependent RNA helicase drs1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR025313 (Domain of unknown function DUF4217), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf19719g00008.1	AT2G36145.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=186		
Niben101Scf00163g00005.1	sp|Q9C652|RBP1_ARATH	*-**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05011g01004.1	sp|P49175|INV1_MAIZE	*-*-	Beta-fructofuranosidase 1	IPR013148 (Glycosyl hydrolase family 32, N-terminal), IPR013189 (Glycosyl hydrolase family 32, C-terminal), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	
Niben101Scf02830g01003.1	sp|Q1JPL7|PME18_ARATH	****	Pectinesterase/pectinesterase inhibitor 18	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf03154g03011.1	ref|NP_001060505.1|	*-*-	product [Oryza sativa Japonica Group]	IPR005134 (Uncharacterised protein family UPF0114)	
Niben101Scf04963g04012.1	ref|XP_007036636.1|	--*-	TMV resistance protein N [Theobroma cacao] gb|EOY21137.1| TMV resistance protein N [Theobroma cacao]		
Niben101Scf05048g00010.1	sp|Q8DLF2|F16PA_THEEB	****	Fructose-1,6-bisphosphatase class 1	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf02576g00005.1	sp|Q84JH9|TBL25_ARATH	*-*-	Protein trichome birefringence-like 25	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf00113g02003.1	sp|O14270|FHL1_SCHPO	*-*-	Fork head transcription factor 1	IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf01897g05001.1	AT3G11000.2	*-*-	DCD (Development and Cell Death) domain protein LENGTH=607	IPR013989 (Development/cell death domain)	
Niben101Scf07105g04007.1	sp|P93822|ERF97_ARATH	*-**	Ethylene-responsive transcription factor 14	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01273g00003.1	emb|CDY21548.1|	*-*-	BnaC09g47440D [Brassica napus]		
Niben101Scf00117g02017.1	ref|XP_007041209.1|	*-*-	Octic , putative isoform 1 [Theobroma cacao]		
Niben101Scf00472g02002.1	sp|O04500|COBL6_ARATH	***-	COBRA-like protein 6	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf06248g01007.1	sp|Q39204|MYC2_ARATH	--*-	Transcription factor MYC2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04103g02007.1	sp|Q6NKW9|E138_ARATH	***-	Glucan endo-1,3-beta-glucosidase 8	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08516g03009.1	AT1G80520.1	***-	Sterile alpha motif (SAM) domain-containing protein LENGTH=192	IPR013761 (Sterile alpha motif/pointed domain)	
Niben101Scf08446g00026.1	sp|A2XW69|BRE1A_ORYSI	--*-	E3 ubiquitin-protein ligase BRE1-like 1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00094g00006.1	emb|CDY38155.1|	*-*-	BnaA07g02280D [Brassica napus]		
Niben101Scf00199g05017.1	sp|Q9UDX3|S14L4_HUMAN	--*-	SEC14-like protein 4	IPR009038 (GOLD)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf15824g00019.1	ref|XP_005651523.1|	****	iron-sulfur cluster assembly protein [Coccomyxa subellipsoidea C-169] gb|EIE26979.1| iron-sulfur cluster assembly protein [Coccomyxa subellipsoidea C-169]	IPR001075 (NIF system FeS cluster assembly, NifU, C-terminal)	GO:0005506 (iron ion binding), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf03210g00005.1	ref|XP_007048885.1|	***-	RING/U-box superfamily protein isoform 1 [Theobroma cacao] gb|EOX93042.1| RING/U-box superfamily protein isoform 1 [Theobroma cacao]	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf32212g00014.1	sp|Q29068|TCPG_PIG	*-*-	T-complex protein 1 subunit gamma	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf08621g03004.1	sp|A9BGS8|MRAY_PETMO	--*-	Phospho-N-acetylmuramoyl-pentapeptide-transferase		
Niben101Scf02908g03013.1	sp|Q9R0S5|YLAT1_RAT	****	Y+L amino acid transporter 1	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf01927g00002.1			Unknown protein		
Niben101Scf18822g02009.1	sp|O65572|CCD1_ARATH	***-	Carotenoid 9,10(9',10')-cleavage dioxygenase 1	IPR004294 (Carotenoid oxygenase)	
Niben101Scf11604g00009.1	AT4G11980.1	****	nudix hydrolase homolog 14 LENGTH=309	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf03422g04010.1	sp|Q9M817|PTR6_ARATH	***-	Protein NRT1/ PTR FAMILY 1.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Ctg12222g00002.1			Unknown protein		
Niben101Scf22589g01002.1	ref|XP_002529925.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF32479.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00503g02007.1	sp|Q9SY02|PP301_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01948g00005.1	AT5G50240.1	****	protein-l-isoaspartate methyltransferase 2 LENGTH=309	IPR000682 (Protein-L-isoaspartate(D-aspartate) O-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0004719 (protein-L-isoaspartate (D-aspartate) O-methyltransferase activity), GO:0006464 (cellular protein modification process)
Niben101Scf12765g01014.1			Unknown protein		
Niben101Scf32157g00005.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05767g04009.1	AT2G27090.1	***-	Protein of unknown function (DUF630 and DUF632) LENGTH=743	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf07788g03003.1	sp|O49436|PP327_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05749g02017.1	AT5G46330.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1173	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf18047g00001.1	AT3G60310.1	***-	unknown protein; Has 22 Blast hits to 18 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=687		
Niben101Scf00306g01003.1	emb|CDY23208.1|	*-*-	BnaA04g05510D [Brassica napus]		
Niben101Scf04504g02016.1	sp|Q9SD82|RFA1B_ARATH	--*-	Replication protein A 70 kDa DNA-binding subunit B		
Niben101Scf01085g02008.1	AT1G48480.1	*-**	receptor-like kinase 1 LENGTH=655	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01432g00001.1	AT1G09320.1	*-*-	agenet domain-containing protein LENGTH=517	IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf02237g01009.1	sp|Q9SZL7|FRS9_ARATH	***-	Protein FAR1-RELATED SEQUENCE 9	IPR018289 (MULE transposase domain)	
Niben101Scf12414g01006.1	sp|Q94C77|RPKL_ARATH	****	Receptor protein kinase-like protein	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06375g01011.1	gb|AET01733.2|	***-	tRNA-splicing endonuclease positive effector-like protein [Medicago truncatula]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Ctg01107g00003.1	AT2G18750.1	*-*-	Calmodulin-binding protein LENGTH=622	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf05737g00021.1	gb|AET00442.2|	***-	lipocalin-like domain protein [Medicago truncatula]	IPR011038 (Calycin-like)	
Niben101Scf01105g01019.1	sp|Q9SKN2|DRB2_ARATH	***-	Double-stranded RNA-binding protein 2	IPR014720 (Double-stranded RNA-binding domain)	
Niben101Scf00046g04020.1	sp|Q9SFC7|FB135_ARATH	--*-	F-box protein		
Niben101Scf09416g05012.1	AT3G44750.1	*-*-	histone deacetylase 3 LENGTH=245		
Niben101Scf11208g00003.1	sp|P61028|RAB8B_MOUSE	***-	Ras-related protein Rab-8B	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02694g07005.1	sp|P34103|PK4_DICDI	*-**	Protein kinase 4	IPR011009 (Protein kinase-like domain), IPR016024 (Armadillo-type fold)	GO:0004672 (protein kinase activity), GO:0005488 (binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00854g02044.1			Unknown protein		
Niben101Scf02518g01007.1	sp|Q9GZR2|REXO4_HUMAN	*-*-	RNA exonuclease 4	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf11009g00051.1	ref|XP_007027258.1|	--*-	Ribonuclease P family protein, putative isoform 2 [Theobroma cacao] gb|EOY07760.1| Ribonuclease P family protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf00046g07033.1			Unknown protein		
Niben101Scf00270g13011.1	gb|ABW97846.1|	***-	MYC [Nicotiana tabacum]		
Niben101Scf00542g04011.1	sp|Q6DJ13|ZN830_XENTR	*-*-	Zinc finger protein 830		
Niben101Scf04487g04005.1	sp|O22714|PPR86_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03224g05020.1	emb|CBM56257.1|	*-**	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00953g04020.1	emb|CDY63745.1|	***-	BnaC05g07770D [Brassica napus]	IPR010410 (Protein of unknown function DUF1005)	
Niben101Scf00711g04013.1	AT2G41370.1	***-	Ankyrin repeat family protein / BTB/POZ domain-containing protein LENGTH=491	IPR011333 (BTB/POZ fold), IPR020683 (Ankyrin repeat-containing domain), IPR024228 (Domain of unknown function DUF3420)	GO:0005515 (protein binding)
Niben101Scf09867g01003.1	AT2G17290.1	****	Calcium-dependent protein kinase family protein LENGTH=544	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01370g03003.1	AT1G34750.1	***-	Protein phosphatase 2C family protein LENGTH=282	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf03595g11009.1	sp|Q9CAJ9|Y1385_ARATH	*-*-	BTB/POZ domain-containing protein		
Niben101Scf16098g00019.1	sp|Q9SV13|SUT31_ARATH	****	Sulfate transporter 3.1	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01326g02001.1	sp|Q9LHF0|ZHD9_ARATH	***-	Zinc-finger homeodomain protein 9	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf01664g00007.1	sp|Q9SXL4|AHK1_ARATH	--*-	Histidine kinase 1		
Niben101Scf03302g02008.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01991g02021.1	ref|XP_002531309.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF31081.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03969g04003.1	sp|Q39085|DIM_ARATH	****	Delta(24)-sterol reductase	IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06486g02001.1			Unknown protein		
Niben101Scf09140g01006.1	sp|Q04609|FOLH1_HUMAN	***-	Glutamate carboxypeptidase 2	IPR007365 (Transferrin receptor-like, dimerisation domain), IPR007484 (Peptidase M28)	
Niben101Scf09869g01023.1	ref|XP_002871133.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH47392.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf07116g00001.1	sp|Q54Z24|PITH1_DICDI	***-	PITH domain-containing protein 1	IPR008979 (Galactose-binding domain-like)	
Niben101Scf01825g02016.1			Unknown protein		
Niben101Scf02795g00003.1	ref|XP_007028975.1|	*-**	DNA-binding bromodomain-containing protein, putative [Theobroma cacao] gb|EOY09477.1| DNA-binding bromodomain-containing protein, putative [Theobroma cacao]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07937g01003.1			Unknown protein		
Niben101Scf04316g08009.1	sp|Q9LRR6|CID9_ARATH	--*-	Polyadenylate-binding protein-interacting protein 9	IPR009818 (Ataxin-2, C-terminal)	
Niben101Scf01115g03004.1	AT3G62860.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=348	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01171g04001.1	gb|AES71907.2|	*-*-	rhodanese/cell cycle control phosphatase superfamily protein [Medicago truncatula]		
Niben101Scf02427g03007.1	sp|O65351|SUBL_ARATH	***-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf09191g02017.1	sp|Q9LNB9|LBD2_ARATH	*-*-	LOB domain-containing protein 2	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf02124g00007.1	AT2G24100.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=466		
Niben101Scf16329g00007.1	sp|Q09326|MGAT2_RAT	****	Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	IPR007754 (N-acetylglucosaminyltransferase II), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005795 (Golgi stack), GO:0008455 (alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity), GO:0009312 (oligosaccharide biosynthetic process), GO:0016021 (integral component of membrane)
Niben101Scf05516g03009.1	ref|XP_010093081.1|	--*-	Rho GDP-dissociation inhibitor 1 [Morus notabilis] gb|EXB53509.1| Rho GDP-dissociation inhibitor 1 [Morus notabilis]		
Niben101Scf04953g03002.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03906g05012.1	gb|AEK83271.1|	***-	At3G54630-like protein [Capsella grandiflora]	IPR005550 (Kinetochore protein Ndc80)	
Niben101Scf00799g03005.1	sp|Q1PFC5|PP130_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01519g10008.1	sp|Q9SXZ2|FT_ARATH	***-	Protein FLOWERING LOCUS T	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf03056g00006.1	sp|Q8RU27|UPTG2_SOLTU	***-	Alpha-1,4-glucan-protein synthase [UDP-forming] 2	IPR004901 (Reversibly glycosylated polypeptide family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016866 (intramolecular transferase activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf04712g00010.1	tpg|DAA42246.1|	*-*-	TPA: hypothetical protein ZEAMMB73_079208 [Zea mays]		
Niben101Scf02160g06057.1			Unknown protein		
Niben101Scf04021g07004.1	sp|Q10SM7|PX111_ORYSJ	****	Peroxisomal membrane protein 11-1	IPR008733 (Peroxisomal biogenesis factor 11)	GO:0005779 (integral component of peroxisomal membrane), GO:0016559 (peroxisome fission)
Niben101Scf01220g03001.1	AT1G30890.1	***-	Integral membrane HRF1 family protein LENGTH=269	IPR005578 (Hrf1)	
Niben101Scf03973g00008.1	sp|Q9FNA9|PDAT1_ARATH	****	Phospholipid:diacylglycerol acyltransferase 1	IPR003386 (Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0008374 (O-acyltransferase activity)
Niben101Scf01239g01007.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03405g04003.1	sp|P93011|PP182_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04596g00002.1	sp|Q5ZKD9|KLH20_CHICK	*-*-	Kelch-like protein 20	IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf02486g08010.1	sp|Q9M9L0|APC11_ARATH	****	Anaphase-promoting complex subunit 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR024991 (Anaphase-promoting complex subunit 11)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005680 (anaphase-promoting complex), GO:0008270 (zinc ion binding)
Niben101Scf05080g01014.1	ref|XP_002882734.1|	*-**	methyl transferase [Arabidopsis lyrata subsp. lyrata] gb|EFH58993.1| methyl transferase [Arabidopsis lyrata subsp. lyrata]	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf04384g02012.1	sp|P43309|PPO_MALDO	*-*-	Polyphenol oxidase, chloroplastic	IPR008922 (Uncharacterised domain, di-copper centre)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02740g07003.1	sp|B0YPN8|RBL_ANEMR	*-*-	Ribulose bisphosphate carboxylase large chain	IPR000685 (Ribulose bisphosphate carboxylase, large subunit, C-terminal)	GO:0000287 (magnesium ion binding)
Niben101Scf00901g05006.1	sp|Q9WTL7|LYPA2_MOUSE	***-	Acyl-protein thioesterase 2	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf00164g01005.1	emb|CDX81524.1|	*-*-	BnaC02g18280D [Brassica napus]		
Niben101Scf06815g00010.1	sp|Q2RLE0|HPPA2_MOOTA	****	K(+)-insensitive pyrophosphate-energized proton pump	IPR004131 (Pyrophosphate-energised proton pump)	GO:0004427 (inorganic diphosphatase activity), GO:0009678 (hydrogen-translocating pyrophosphatase activity), GO:0015992 (proton transport), GO:0016020 (membrane)
Niben101Scf07576g04015.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00262g03001.1	AT3G08620.1	****	RNA-binding KH domain-containing protein LENGTH=283	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf02406g04045.1	sp|Q14FG6|RPOC1_POPAL	*-**	DNA-directed RNA polymerase subunit beta'	IPR007080 (RNA polymerase Rpb1, domain 1)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf00262g03003.1	sp|P93847|RL10_SOLME	***-	60S ribosomal protein L10	IPR001197 (Ribosomal protein L10e), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00781g05001.1	sp|Q5E971|TMEDA_BOVIN	***-	Transmembrane emp24 domain-containing protein 10	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf02309g03027.1	sp|Q6EYW3|PSBF_AGARO	*-*-	Cytochrome b559 subunit beta	IPR002682 (Photosystem II PsbJ), IPR003372 (Photosystem II PsbL), IPR013081 (Photosystem II cytochrome b559, N-terminal)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0015979 (photosynthesis), GO:0016020 (membrane)
Niben101Scf02904g00015.1	gb|ABF95707.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf03280g01018.1	AT4G20070.1	***-	allantoate amidohydrolase LENGTH=525	IPR002933 (Peptidase M20)	GO:0006508 (proteolysis), GO:0008152 (metabolic process), GO:0008237 (metallopeptidase activity), GO:0016787 (hydrolase activity), GO:0016813 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines)
Niben101Scf13146g00006.1	sp|P48368|CRTE_CYAPA	***-	Geranylgeranyl diphosphate synthase	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf08447g04002.1			Unknown protein		
Niben101Scf05329g05013.1	AT3G56210.5	***-	ARM repeat superfamily protein LENGTH=193	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf08127g02001.1	sp|Q9SI52|P4KG7_ARATH	***-	Phosphatidylinositol 4-kinase gamma 7	IPR000403 (Phosphatidylinositol 3-/4-kinase, catalytic domain), IPR029071 (Ubiquitin-related domain)	GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00491g04007.1	sp|Q6D3T7|CLPS_PECAS	-**-	ATP-dependent Clp protease adapter protein ClpS	IPR014719 (Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like), IPR022935 (ATP-dependent Clp protease adaptor protein ClpS)	GO:0030163 (protein catabolic process)
Niben101Scf07638g03015.1	AT5G25360.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=169	IPR025124 (Domain of unknown function DUF4050)	
Niben101Scf01221g12013.1	dbj|BAB01344.1|	*-*-	reverse transcriptase-like protein [Arabidopsis thaliana]		
Niben101Scf04909g01005.1	sp|Q6H4R6|HAK23_ORYSJ	*-**	Potassium transporter 23	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf25598g01003.1	sp|Q84J95|GASA5_ARATH	*-*-	Gibberellin-regulated protein 5	IPR003854 (Gibberellin regulated protein)	
Niben101Scf03648g04012.1	sp|P52777|PALY_PINTA	*-**	Phenylalanine ammonia-lyase	IPR001106 (Aromatic amino acid lyase), IPR008948 (L-Aspartase-like), IPR023144 (Phenylalanine ammonia-lyase, shielding domain), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf18879g03001.1			Unknown protein		
Niben101Scf00279g01008.1	emb|CAE03375.1|	--*-	OSJNBa0036B21.17 [Oryza sativa Japonica Group]		
Niben101Scf01276g05013.1	ref|NP_001059739.1|	***-	product [Oryza sativa Japonica Group]	IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf01100g06015.1			Unknown protein	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf04462g01006.1	emb|CDY20120.1|	***-	BnaA01g28820D [Brassica napus]		
Niben101Scf01346g01023.1	sp|Q9FNP8|RS193_ARATH	***-	40S ribosomal protein S19-3	IPR001266 (Ribosomal protein S19e), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05341g00002.1	emb|CDY36376.1|	***-	BnaC04g32840D [Brassica napus]	IPR026797 (HAUS augmin-like complex subunit 6), IPR028163 (HAUS augmin-like complex subunit 6, N-terminal)	GO:0051225 (spindle assembly), GO:0051297 (centrosome organization), GO:0070652 (HAUS complex)
Niben101Scf02350g01005.1	sp|Q9C895|BRE1B_ARATH	***-	E3 ubiquitin-protein ligase BRE1-like 2	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf23548g00002.1			Unknown protein		
Niben101Scf11709g01024.1	emb|CDY21030.1|	***-	BnaA08g24950D [Brassica napus]		
Niben101Scf04060g04001.1	AT4G35870.1	***-	early-responsive to dehydration stress protein (ERD4) LENGTH=817	IPR003864 (Domain of unknown function DUF221)	GO:0016020 (membrane)
Niben101Scf15739g02002.1	AT2G18180.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=558	IPR001071 (Cellular retinaldehyde binding/alpha-tocopherol transport), IPR011074 (CRAL/TRIO, N-terminal domain)	GO:0005215 (transporter activity), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf02282g01016.1	sp|Q9HDW7|ATC2_SCHPO	****	Calcium-transporting ATPase 2	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0005388 (calcium-transporting ATPase activity), GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding), GO:0070588 (calcium ion transmembrane transport)
Niben101Scf02790g03004.1	sp|O35547|ACSL4_RAT	***-	Long-chain-fatty-acid--CoA ligase 4	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf16974g00007.1			Unknown protein		
Niben101Scf08753g02032.1	sp|Q69QB8|CCD31_ORYSJ	--*-	Cyclin-D3-1	IPR004147 (UbiB domain)	
Niben101Scf00984g08003.1	sp|Q39263|ZFP4_ARATH	***-	Zinc finger protein 4	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf04505g00004.1	gb|KEH22373.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf01063g06003.1	ref|WP_013924234.1|	****	major facilitator transporter [Parachlamydia acanthamoebae] ref|YP_004651064.1| metabolite transport protein ywtG [Parachlamydia acanthamoebae UV-7] emb|CCB85210.1| putative metabolite transport protein ywtG [Parachlamydia acanthamoebae UV-7]	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf16542g01003.1	sp|Q5M8G4|LRC40_XENTR	*-*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00343g03002.1	ref|NP_974069.1|	--**	mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gb|AAB60758.1| F19K23.4 gene product [Arabidopsis thaliana] gb|AEE33923.1| mitochondrial transcription termination factor family protein [Arabidopsis thaliana]	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06583g04007.1	ref|XP_002528981.1|	*-**	metal ion binding protein, putative [Ricinus communis] gb|EEF33400.1| metal ion binding protein, putative [Ricinus communis]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf04699g00016.1	sp|Q5RAJ5|STK36_PONAB	*-**	Serine/threonine-protein kinase 36	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06310g00002.1	sp|P37123|C77A1_SOLME	*-*-	Cytochrome P450 77A1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02922g02031.1	emb|CDY33789.1|	*-*-	BnaA09g45950D [Brassica napus]	IPR008581 (Protein of unknown function DUF863, plant)	
Niben101Scf02972g00012.1			Unknown protein		
Niben101Scf01428g04013.1	sp|P93822|ERF97_ARATH	*-**	Ethylene-responsive transcription factor 14	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08102g00001.1	sp|P65928|PYRH_LISIN	****	Uridylate kinase	IPR001048 (Aspartate/glutamate/uridylate kinase), IPR006578 (MADF domain), IPR015963 (Uridylate kinase, bacteria)	GO:0005737 (cytoplasm), GO:0006221 (pyrimidine nucleotide biosynthetic process), GO:0033862 (UMP kinase activity)
Niben101Scf07091g00005.1	sp|Q8VH51|RBM39_MOUSE	--**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03962g01013.1			Unknown protein		
Niben101Scf08513g00001.1			Unknown protein		
Niben101Scf01284g04006.1	sp|Q28141|DHX9_BOVIN	*-**	ATP-dependent RNA helicase A	IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding)
Niben101Scf29906g00001.1	sp|Q9SRV5|METE2_ARATH	--*-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2		
Niben101Scf09184g01003.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf09416g01005.1	AT1G08230.2	***-	Transmembrane amino acid transporter family protein LENGTH=451	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf11576g00006.1	sp|Q5ZIN1|NUDC_CHICK	*-*-	Nuclear migration protein nudC		
Niben101Scf02944g02002.1	sp|Q84KJ6|AMT31_ORYSJ	****	Ammonium transporter 3 member 1	IPR001905 (Ammonium transporter), IPR002229 (Blood group Rhesus C/E/D polypeptide), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf09854g02005.1	sp|Q9UTT1|UBP21_SCHPO	****	Ubiquitin carboxyl-terminal hydrolase 21	IPR008974 (TRAF-like), IPR024729 (ICP0-binding domain of Ubiquitin-specific protease 7), IPR028889 (Ubiquitin specific protease domain), IPR029346 (Ubiquitin carboxyl-terminal hydrolase, C-terminal)	GO:0005515 (protein binding), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf02292g00008.1	AT2G36910.1	*-**	ATP binding cassette subfamily B1 LENGTH=1286	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf04406g04009.1	sp|Q9DCL8|IPP2_MOUSE	-***	Protein phosphatase inhibitor 2	IPR007062 (Protein phosphatase inhibitor 2 (IPP-2))	GO:0004864 (protein phosphatase inhibitor activity), GO:0009966 (regulation of signal transduction), GO:0043666 (regulation of phosphoprotein phosphatase activity)
Niben101Scf01521g04001.1	sp|P0C8Q3|PP326_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf00046g01017.1	sp|Q84JC0|RRP8_ARATH	***-	Ribosomal RNA-processing protein 8	IPR007823 (Methyltransferase-related), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf06525g00026.1	sp|Q9FGK4|B561J_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf20124g00012.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03643g02009.1	ref|XP_002535856.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06825g00013.1	sp|A6WMP4|SYN_SHEB8	****	Asparagine--tRNA ligase	IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004816 (asparagine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006421 (asparaginyl-tRNA aminoacylation)
Niben101Scf00083g04032.1	sp|P54001|P4HA1_RAT	*-*-	Prolyl 4-hydroxylase subunit alpha-1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05875g00012.1	AT3G44730.1	*-**	kinesin-like protein 1 LENGTH=1087	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf03445g06002.1	AT5G50410.1	***-	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). LENGTH=259		
Niben101Scf00244g01010.1	sp|Q9MB46|VATE_CITUN	****	V-type proton ATPase subunit E	IPR002842 (ATPase, V1/A1 complex, subunit E)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf07147g03014.1	emb|CDY34463.1|	***-	BnaC01g21700D [Brassica napus]		
Niben101Scf04318g01016.1	sp|P12062|CB26_PETSP	***-	Chlorophyll a-b binding protein 37, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf01777g02001.1	AT2G26150.1	****	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04487g06016.1	sp|A1UDD2|RF2_MYCSK	****	Peptide chain release factor 2	IPR004374 (Peptide chain release factor 2), IPR014720 (Double-stranded RNA-binding domain)	GO:0003747 (translation release factor activity), GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf05827g00015.1	sp|Q8GWW7|AGUA_ARATH	****	Agmatine deiminase	IPR007466 (Peptidyl-arginine deiminase, Porphyromonas-type)	GO:0004668 (protein-arginine deiminase activity), GO:0009446 (putrescine biosynthetic process), GO:0047632 (agmatine deiminase activity)
Niben101Scf01451g04009.1	ref|XP_002524568.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF37776.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01237g07008.1	sp|Q9FLB5|LAC12_ARATH	***-	Laccase-12	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03437g02004.1	ref|WP_026721373.1|	***-	molecular chaperone DnaJ [Fischerella sp. PCC 9431]	IPR021788 (Protein of unknown function DUF3353)	
Niben101Scf00869g06027.1	sp|P80680|FTRV_MAIZE	*-*-	Ferredoxin-thioredoxin reductase, variable chain	IPR003698 (Lipoyl synthase), IPR008990 (Electron transport accessory protein-like domain)	GO:0009107 (lipoate biosynthetic process), GO:0015979 (photosynthesis), GO:0016992 (lipoate synthase activity), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf01494g06003.1	sp|Q9LFR3|GASAE_ARATH	*-*-	Gibberellin-regulated protein 14	IPR003854 (Gibberellin regulated protein)	
Niben101Scf01920g00002.1	AT2G36300.1	****	Integral membrane Yip1 family protein LENGTH=255	IPR006977 (Yip1 domain)	GO:0016020 (membrane)
Niben101Scf03894g01016.1	sp|Q6P3Q4|STK4_XENTR	*-**	Serine/threonine-protein kinase 4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01650g00011.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf03294g00001.1	sp|Q9FLS0|FB253_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf11980g01008.1	sp|Q8W4J3|QSOX1_ARATH	****	Sulfhydryl oxidase 1	IPR012336 (Thioredoxin-like fold), IPR017905 (ERV/ALR sulfhydryl oxidase domain)	GO:0016972 (thiol oxidase activity), GO:0045454 (cell redox homeostasis), GO:0055114 (oxidation-reduction process)
Niben101Scf01696g00012.1	AT1G54460.1	*-*-	TPX2 (targeting protein for Xklp2) protein family LENGTH=338	IPR027329 (TPX2, C-terminal domain)	
Niben101Scf07205g00009.1	gb|KEH43891.1|	***-	class IV aminotransferase [Medicago truncatula]	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf06596g03005.1	sp|A4KZ49|POLG_TRMVU	--*-	Genome polyprotein		
Niben101Scf05692g00011.1	sp|Q7V9W9|RL16_PROMA	--*-	50S ribosomal protein L16	IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10015g07014.1	sp|A7WM73|HEXO1_ARATH	****	Beta-hexosaminidase 1	IPR017853 (Glycoside hydrolase superfamily), IPR025705 (Beta-hexosaminidase), IPR029018 (Chitobiase/beta-hexosaminidase domain 2-like)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004563 (beta-N-acetylhexosaminidase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf35572g01009.1	sp|Q9SY60|EX84C_ARATH	--*-	Exocyst complex component EXO84C		
Niben101Scf03844g01015.1	AT5G66890.1	***-	Leucine-rich repeat (LRR) family protein LENGTH=415	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00982g02005.1	sp|P52409|E13B_WHEAT	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05348g01023.1	sp|P23279|1A11_CUCPE	***-	1-aminocyclopropane-1-carboxylate synthase 1	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf09962g01008.1	gb|KEH20772.1|	***-	lysine ketoglutarate reductase trans-splicing protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf02804g00013.1	AT5G19460.1	****	nudix hydrolase homolog 20 LENGTH=374	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf05720g03001.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Ctg13030g00001.1	sp|Q7X7X4|C99A2_ORYSJ	*-*-	Cytochrome P450 99A2	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07541g00032.1	emb|CED79820.1|	*-*-	Ycf1 protein (chloroplast) [Hesperelaea palmeri]		
Niben101Scf01190g01001.1	emb|CDX82023.1|	*-*-	BnaC08g35780D [Brassica napus]		
Niben101Scf04418g12013.1			Unknown protein		
Niben101Scf12211g02010.1	gb|ABA95488.2|	***-	expressed protein [Oryza sativa Japonica Group]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf17701g01024.1	AT5G42090.1	***-	Lung seven transmembrane receptor family protein LENGTH=439	IPR009637 (Transmembrane receptor, eukaryota)	GO:0016021 (integral component of membrane)
Niben101Scf02816g07004.1	sp|O23474|PER40_ARATH	*-**	Peroxidase 40	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00209g00010.1	sp|Q5JLD8|CIPK8_ORYSJ	****	CBL-interacting protein kinase 8	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09867g02016.1	sp|Q9SZL9|CSLD4_ARATH	*-**	Cellulose synthase-like protein D4	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Ctg11584g00002.1	sp|Q9H0N0|RAB6C_HUMAN	--*-	Ras-related protein Rab-6C	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf04981g00001.1	sp|Q9ZW30|GSTU1_ARATH	***-	Glutathione S-transferase U1	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf10241g02010.1	sp|Q9SGE3|H2B2_ARATH	*-*-	Histone H2B.2	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf03526g01009.1	AT2G33320.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=602	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00491g03002.1	sp|Q6NUP7|PP4R4_HUMAN	*-*-	Serine/threonine-protein phosphatase 4 regulatory subunit 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02915g04003.1	sp|Q93VJ4|BEE2_ARATH	*-*-	Transcription factor BEE 2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf17336g00010.1	sp|Q9FN11|LBD37_ARATH	***-	LOB domain-containing protein 37	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf00577g09001.1			Unknown protein		
Niben101Scf13041g02009.1	AT4G33350.1	***-	Tic22-like family protein LENGTH=268	IPR007378 (Tic22-like)	
Niben101Ctg16325g00005.1	AT1G18550.1	****	ATP binding microtubule motor family protein LENGTH=725	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf01628g00024.1	sp|Q04716|RT03_PETHY	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf04334g00003.1	sp|Q9CPU0|LGUL_MOUSE	-***	Lactoylglutathione lyase	IPR018146 (Glyoxalase I, conserved site), IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	GO:0004462 (lactoylglutathione lyase activity), GO:0046872 (metal ion binding)
Niben101Scf09368g06005.1	AT5G65380.1	*-*-	MATE efflux family protein LENGTH=486	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01283g00007.1	sp|A8P7F7|NOP9_COPC7	***-	Nucleolar protein 9	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf01142g04003.1	AT3G02645.1	*-*-	Plant protein of unknown function (DUF247) LENGTH=529	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf02552g03009.1	sp|Q8W4I7|CDPKD_ARATH	*-**	Calcium-dependent protein kinase 13	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06200g03002.1			Unknown protein		
Niben101Scf10161g00002.1			Unknown protein		
Niben101Scf03823g02037.1	sp|Q6G553|DNAJ_BARHE	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf05372g02001.1	AT1G07420.1	***-	sterol 4-alpha-methyl-oxidase 2-1 LENGTH=266	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02877g02002.1	sp|O14368|HSP16_SCHPO	--*-	Heat shock protein 16	IPR008978 (HSP20-like chaperone)	
Niben101Scf00348g01007.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf07114g01001.1	sp|B2SHD4|TGT_FRATM	--**	Queuine tRNA-ribosyltransferase	IPR002616 (tRNA-guanine(15) transglycosylase-like)	GO:0006400 (tRNA modification), GO:0008479 (queuine tRNA-ribosyltransferase activity), GO:0008616 (queuosine biosynthetic process)
Niben101Scf10678g00013.1	sp|Q9AAW1|METE_CAUCR	*-**	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	IPR002629 (Cobalamin-independent methionine synthase MetE, C-terminal/archaeal)	GO:0003871 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity), GO:0008270 (zinc ion binding), GO:0009086 (methionine biosynthetic process)
Niben101Scf07593g01001.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04914g00006.1			Unknown protein		
Niben101Scf04287g00001.1			Unknown protein		
Niben101Scf10722g00011.1	sp|P40690|ALKE_BABBO	***-	Aldo-keto reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf04727g07010.1	emb|CDY00858.1|	***-	BnaCnng00580D [Brassica napus]		
Niben101Scf04871g24026.1	sp|Q9FR82|SLD1_BOROF	*-*-	Delta(8)-fatty-acid desaturase	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf02269g01003.1	sp|Q9LY56|YIPL4_ARATH	*-*-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf02086g01002.1	sp|Q9STF0|LRKS3_ARATH	*-**	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00375g01007.1			Unknown protein		
Niben101Scf03949g01010.1	sp|A2YQL4|SCRK2_ORYSI	***-	Fructokinase-2	IPR029056 (Ribokinase-like)	
Niben101Scf04963g04005.1	sp|P0C1U4|GUN9_ORYSJ	***-	Endoglucanase 9	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05692g07007.1	sp|O04940|CDS1_SOLTU	***-	Phosphatidate cytidylyltransferase	IPR000374 (Phosphatidate cytidylyltransferase)	GO:0016020 (membrane), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02323g02004.1	AT1G80270.1	*-*-	PENTATRICOPEPTIDE REPEAT 596 LENGTH=596	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01143g02015.1	ref|WP_027366970.1|	*-*-	DEAD/DEAH box helicase [Desulfovibrio africanus]	IPR018973 (DEAD/DEAH-box helicase, putative)	
Niben101Scf03651g02007.1	tpg|DAA59737.1|	*-*-	TPA: hypothetical protein ZEAMMB73_091688 [Zea mays]	IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane)
Niben101Scf03435g00008.1	sp|Q6NNI3|LSH1_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1	IPR006936 (ALOG domain)	
Niben101Scf01037g11006.1	AT4G24370.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=164		
Niben101Scf04383g01013.1	sp|P49082|GPA1_LOTJA	*-**	Guanine nucleotide-binding protein alpha-1 subunit	IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0007186 (G-protein coupled receptor signaling pathway), GO:0019001 (guanyl nucleotide binding), GO:0031683 (G-protein beta/gamma-subunit complex binding)
Niben101Scf11767g00003.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06123g03010.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg13411g00003.1	sp|Q9LV40|ROGF8_ARATH	****	Rho guanine nucleotide exchange factor 8	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf20009g00005.1			Unknown protein		
Niben101Scf12785g00010.1			Unknown protein		
Niben101Scf11416g00006.1	gb|AES79945.2|	***-	titan9, putative [Medicago truncatula]		
Niben101Scf01961g00002.1	sp|O04057|ASPR_CUCPE	****	Aspartic proteinase	IPR001461 (Aspartic peptidase), IPR011001 (Saposin-like), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis), GO:0006629 (lipid metabolic process)
Niben101Scf13779g00003.1	sp|O80340|ERF78_ARATH	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04563g00001.1	sp|P23901|ALDR_HORVU	****	Aldose reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02681g01016.1			Unknown protein		
Niben101Scf06356g00002.1	emb|CDY45142.1|	*-*-	BnaA09g14500D [Brassica napus]	IPR007679 (Protein of unknown function DUF569)	
Niben101Scf00466g04037.1	sp|P21616|AVP_VIGRR	*-**	Pyrophosphate-energized vacuolar membrane proton pump	IPR004131 (Pyrophosphate-energised proton pump)	GO:0004427 (inorganic diphosphatase activity), GO:0009678 (hydrogen-translocating pyrophosphatase activity), GO:0015992 (proton transport), GO:0016020 (membrane)
Niben101Scf04122g02006.1	AT4G05150.1	***-	Octicosapeptide/Phox/Bem1p family protein LENGTH=477	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf03597g01012.1	sp|Q5L0Q3|RNC_GEOKA	*-**	Ribonuclease 3	IPR000999 (Ribonuclease III domain), IPR014720 (Double-stranded RNA-binding domain)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0006396 (RNA processing)
Niben101Scf18967g00002.1	AT1G64300.1	****	Protein kinase family protein LENGTH=717	IPR010632 (Domain of unknown function DUF1221), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11915g00004.1	gb|KEH27185.1|	***-	Avr9/Cf-9 rapidly elicited protein [Medicago truncatula]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf04745g07019.1	sp|A9GAW6|FTSH3_SORC5	*-**	ATP-dependent zinc metalloprotease FtsH 3	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf05011g00007.1	AT3G58480.1	*-*-	calmodulin-binding family protein LENGTH=575		
Niben101Scf01727g02007.1	sp|Q9C519|WRKY6_ARATH	*-**	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05610g03026.1	sp|P29054|TF2B_XENLA	*-**	Transcription initiation factor IIB	IPR000812 (Transcription factor TFIIB)	GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0017025 (TBP-class protein binding)
Niben101Scf09554g02010.1	sp|Q9H0X6|RN208_HUMAN	--*-	RING finger protein 208	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027370 (RING-type zinc-finger, LisH dimerisation motif)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf10144g01022.1	AT4G08850.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf03570g00005.1			Unknown protein		
Niben101Scf05177g01023.1	AT5G23370.1	***-	GRAM domain-containing protein / ABA-responsive protein-related LENGTH=219	IPR004182 (GRAM domain)	
Niben101Scf02868g04003.1	sp|Q9SW07|GDU2_ARATH	***-	Protein GLUTAMINE DUMPER 2		
Niben101Scf05506g06001.1	sp|Q6X7K1|WOX2_ARATH	*-*-	WUSCHEL-related homeobox 2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf02706g04001.1	gb|AAX94970.1|	*-*-	retrotransp , putative, unclassified [Oryza sativa Japonica Group]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf13527g00013.1			Unknown protein		
Niben101Scf05438g01021.1	AT1G64050.1	*-*-	unknown protein; Has 524 Blast hits to 342 proteins in 101 species: Archae - 0; Bacteria - 106; Metazoa - 106; Fungi - 24; Plants - 25; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink). LENGTH=668		
Niben101Scf03514g00003.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf07440g01021.1	ref|NP_001042847.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAF04761.1| [Oryza sativa Japonica Group]	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf00088g00006.1	AT5G14980.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=327	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01980g06007.1			Unknown protein		
Niben101Scf01685g08004.1	emb|CCQ71680.1|	*-*-	Ycf1 (chloroplast) [Salvia miltiorrhiza]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf04016g01001.1	sp|Q40901|DEF_PETIN	***-	Defensin-like protein	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf02922g00001.1	AT5G61210.1	***-	soluble N-ethylmaleimide-sensitive factor adaptor protein 33 LENGTH=300	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf04884g01012.1	sp|Q5RBU7|PCP_PONAB	*-**	Lysosomal Pro-X carboxypeptidase	IPR008758 (Peptidase S28), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf00593g03002.1	sp|Q9FM19|HIR1_ARATH	***-	Hypersensitive-induced response protein 1	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf02814g02005.1	sp|P28769|TCPA_ARATH	***-	T-complex protein 1 subunit alpha	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process)
Niben101Scf02220g05014.1	sp|Q7NFE9|CLPB_GLOVI	*-*-	Chaperone protein ClpB	IPR004176 (Clp, N-terminal), IPR023150 (Double Clp-N motif)	GO:0019538 (protein metabolic process)
Niben101Scf01177g02005.1	sp|Q8VYW6|GAGT1_ARATH	****	Gamma-glutamyltranspeptidase 1	IPR000101 (Gamma-glutamyltranspeptidase), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0003840 (gamma-glutamyltransferase activity), GO:0006749 (glutathione metabolic process)
Niben101Scf02074g06072.1	sp|Q1ACK9|MATK_CHAVU	--*-	Maturase K	IPR000477 (Reverse transcriptase domain), IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf08729g02019.1	ref|XP_002516591.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF45932.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05895g02017.1	AT5G66310.1	*-**	ATP binding microtubule motor family protein LENGTH=1063	IPR001752 (Kinesin motor domain), IPR021881 (Protein of unknown function DUF3490), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf08315g00004.1			Unknown protein		
Niben101Scf05082g02007.1	ref|NP_565431.1|	****	protein RER1D [Arabidopsis thaliana] RecName: Full=Protein RER1D; Short=AtRER1D [Arabidopsis thaliana] gb|AAD15512.2| putative integral membrane protein [Arabidopsis thaliana] dbj|BAC43104.1| putative integral membrane protein [Arabidopsis thaliana] dbj|BAF00357.1| putative integral membrane protein [Arabidopsis thaliana] gb|ABN04801.1| [Arabidopsis thaliana] gb|AEC06743.1| protein RER1D [Arabidopsis thaliana]	IPR004932 (Retrieval of early ER protein Rer1)	GO:0016021 (integral component of membrane)
Niben101Scf03987g00003.1	sp|Q8GY42|NAC25_ARATH	--**	NAC transcription factor 25	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02394g01002.1	sp|Q9C8E7|GLR33_ARATH	*-**	Glutamate receptor 3.3	IPR001320 (Ionotropic glutamate receptor)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf00254g00006.1	gb|KEH26285.1|	--*-	heavy metal-associated domain protein [Medicago truncatula]		
Niben101Scf02429g01002.1	sp|Q8L796|PI5K2_ARATH	****	Phosphatidylinositol 4-phosphate 5-kinase 2	IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf00519g00016.1	AT1G18700.4	*-*-	DNAJ heat shock N-terminal domain-containing protein LENGTH=715	IPR001623 (DnaJ domain), IPR012336 (Thioredoxin-like fold)	
Niben101Scf00206g01002.1	ref|NP_001170473.1|	--*-	starch branching enzyme interacting protein-1 [Zea mays] gb|ACN67533.1| starch branching enzyme interacting protein-1 [Zea mays]		
Niben101Scf06486g06003.1	sp|Q8LFQ6|GRXC4_ARATH	***-	Glutaredoxin-C4	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf22665g00001.1	sp|Q2JV86|RL22_SYNJA	***-	50S ribosomal protein L22	IPR001063 (Ribosomal protein L22/L17)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02652g01029.1	sp|Q5HRM8|CLPC_STAEQ	*-*-	ATP-dependent Clp protease ATP-binding subunit ClpC	IPR004176 (Clp, N-terminal), IPR023150 (Double Clp-N motif)	GO:0019538 (protein metabolic process)
Niben101Scf04526g03001.1			Unknown protein		
Niben101Scf04532g00004.1	sp|Q08891|FACR2_ARATH	*-**	Fatty acyl-CoA reductase 2	IPR026055 (Fatty acyl-CoA reductase)	GO:0080019 (fatty-acyl-CoA reductase (alcohol-forming) activity)
Niben101Scf14883g02012.1			Unknown protein		
Niben101Scf09811g02010.1	sp|Q9T076|ENL2_ARATH	*-*-	Early nodulin-like protein 2	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf02122g01006.1	sp|P40069|IMB4_YEAST	***-	Importin subunit beta-4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf20268g00001.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03645g02003.1	sp|Q93Z16|RPN2_ARATH	*-*-	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	IPR008814 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1)	GO:0006487 (protein N-linked glycosylation), GO:0008250 (oligosaccharyltransferase complex), GO:0016021 (integral component of membrane)
Niben101Ctg12308g00003.1	sp|B9GXD6|CSPLO_POPTR	***-	CASP-like protein 3A1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf01041g03001.1			Unknown protein		
Niben101Scf01640g04001.1	sp|Q044H0|FMT_LACGA	***-	Methionyl-tRNA formyltransferase	IPR011034 (Formyl transferase, C-terminal-like), IPR015518 (Methionine tRNA Formyltransferase-like)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0016742 (hydroxymethyl-, formyl- and related transferase activity)
Niben101Scf06061g00014.1	sp|Q42653.1|OMT2_CHRAE	****	RecName: Full=Quercetin 3-O-methyltransferase 2; AltName: Full=Flavonol 3-O-methyltransferase 2 [Chrysosplenium americanum] gb|AAA86982.1| caffeic acid O-methyl transferase [Chrysosplenium americanum]	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity)
Niben101Scf11205g00002.1	AT4G28088.1	***-	Low temperature and salt responsive protein family LENGTH=77	IPR000612 (Proteolipid membrane potential modulator)	GO:0016021 (integral component of membrane)
Niben101Scf01453g04007.1	AT1G34010.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=182		
Niben101Scf00761g02006.1	sp|Q8VXQ2|ALDH_CRAPL	****	Aldehyde dehydrogenase	IPR012394 (Aldehyde dehydrogenase NAD(P)-dependent), IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0004030 (aldehyde dehydrogenase [NAD(P)+] activity), GO:0006081 (cellular aldehyde metabolic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00851g02011.1	sp|Q9LT79|PUB25_ARATH	***-	U-box domain-containing protein 25	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf04231g01025.1	gb|AES98434.2|	*-*-	vacuolar iron transporter-like protein [Medicago truncatula]	IPR008217 (Ccc1 family)	
Niben101Scf31091g00006.1			Unknown protein		
Niben101Scf02939g01004.1	AT2G05590.2	***-	TLD-domain containing nucleolar protein LENGTH=303	IPR006571 (TLDc domain)	
Niben101Scf04053g03016.1	ref|XP_002518339.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF44099.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03271g00003.1	sp|Q02854|NUXM_NEUCR	-**-	NADH-ubiquinone oxidoreductase 20.9 kDa subunit	IPR019721 (NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminal)	
Niben101Scf01858g01001.1	sp|Q12CM2|HLDD_POLSJ	--*-	ADP-L-glycero-D-manno-heptose-6-epimerase	IPR016040 (NAD(P)-binding domain)	
Niben101Scf03559g01009.1	ref|NP_176509.1|	--*-	cystatin-related domain protein [Arabidopsis thaliana] hypothetical protein; 89904-88916 [Arabidopsis thaliana] gb|AEE34068.1| cystatin-related domain protein [Arabidopsis thaliana]		
Niben101Scf02929g01016.1			Unknown protein		
Niben101Scf02085g12012.1	sp|Q53MB8|TLPH_ORYSJ	*-*-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf01943g06003.1			Unknown protein		
Niben101Scf01036g03004.1	sp|Q39112|GAOX3_ARATH	***-	Gibberellin 20 oxidase 3	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf11383g02018.1	emb|CDY50764.1|	***-	BnaAnng10710D [Brassica napus]		
Niben101Scf07623g01035.1	sp|Q3J5H6|GLND_RHOS4	--*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme		
Niben101Scf04598g01002.1	emb|CDY23375.1|	*-*-	BnaC04g49030D [Brassica napus]		
Niben101Scf06369g05022.1	sp|Q9C5Z2|EIF3H_ARATH	****	Eukaryotic translation initiation factor 3 subunit H	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR027524 (Eukaryotic translation initiation factor 3 subunit H)	GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf05676g01001.1	ref|XP_002530720.1|	-**-	Protein SCRL10 precursor, putative [Ricinus communis] gb|EEF31674.1| Protein SCRL10 precursor, putative [Ricinus communis]		
Niben101Scf03641g13002.1	dbj|BAA96881.1|	--*-	mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf01858g01002.1	sp|J9RYI6|DCVR_CUCSA	***-	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic	IPR016040 (NAD(P)-binding domain)	
Niben101Scf00960g08001.1	sp|Q8GWJ6|MUB6_ARATH	***-	Membrane-anchored ubiquitin-fold protein 6	IPR017000 (Membrane-anchored ubiquitin-fold protein, HCG-1), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf03479g05043.1	AT3G07190.1	****	B-cell receptor-associated protein 31-like LENGTH=220	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf03643g06004.1	AT4G01240.1	*-*-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=659	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf01826g05011.1	sp|Q5ZM74|RN141_CHICK	--*-	RING finger protein 141		
Niben101Scf02010g04024.1	emb|CCA15164.1|	*-*-	conserved hypothetical protein [Albugo laibachii Nc14]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf08519g00001.1	sp|Q4P683|ATG9_USTMA	***-	Autophagy-related protein 9	IPR007241 (Autophagy-related protein 9)	
Niben101Scf05830g01017.1	sp|Q7XJK6|AGL36_ARATH	--*-	Agamous-like MADS-box protein AGL36	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf07002g00003.1	AT1G66730.1	****	DNA LIGASE 6 LENGTH=1396	IPR001279 (Beta-lactamase-like), IPR011084 (DNA repair metallo-beta-lactamase), IPR012308 (DNA ligase, ATP-dependent, N-terminal), IPR012310 (DNA ligase, ATP-dependent, central)	GO:0003677 (DNA binding), GO:0003910 (DNA ligase (ATP) activity), GO:0005524 (ATP binding), GO:0006281 (DNA repair), GO:0006310 (DNA recombination)
Niben101Scf00388g03007.1	sp|Q0IH28|DRS7B_XENLA	****	Dehydrogenase/reductase SDR family member 7B	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf11037g02027.1	sp|Q9D994|WDR38_MOUSE	*-*-	WD repeat-containing protein 38	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01362g02005.1	gb|ABD32221.2|	****	RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula]	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf09133g03019.1	sp|Q9FRG8|GRF9_ORYSJ	--*-	Growth-regulating factor 9	IPR014977 (WRC)	
Niben101Scf02478g00007.1	sp|Q96KG9|NTKL_HUMAN	***-	N-terminal kinase-like protein	IPR011009 (Protein kinase-like domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09360g00020.1			Unknown protein		
Niben101Scf02769g00003.1	AT3G06930.2	*-**	protein arginine methyltransferase 4B LENGTH=535	IPR025799 (Protein arginine N-methyltransferase)	GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity)
Niben101Scf06164g01014.1			Unknown protein		
Niben101Scf14883g02011.1	gb|AAD24658.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]	IPR018289 (MULE transposase domain)	
Niben101Scf01181g03004.1	AT4G21460.1	*-*-	Ribosomal protein S24/S35, mitochondrial LENGTH=415		
Niben101Scf01269g02009.1			Unknown protein		
Niben101Scf05173g00014.1	sp|Q5E9N3|RNF25_BOVIN	*-*-	E3 ubiquitin-protein ligase RNF25	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	GO:0005515 (protein binding)
Niben101Ctg15651g00003.1	sp|Q9S9N9|CCR1_ARATH	***-	Cinnamoyl-CoA reductase 1	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	
Niben101Scf06236g01022.1	sp|O81312|GAE3_ARATH	*-*-	UDP-glucuronate 4-epimerase 3	IPR016040 (NAD(P)-binding domain)	
Niben101Scf00980g05008.1	AT3G57070.1	***-	Glutaredoxin family protein LENGTH=417	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02976g01016.1	sp|Q5ZKU5|RAB14_CHICK	*-*-	Ras-related protein Rab-14	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf00272g11022.1	sp|P0CP89|PPIL4_CRYNB	*-**	Peptidyl-prolyl cis-trans isomerase-like 4	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf02394g01003.1	sp|Q9C8E7|GLR33_ARATH	*-**	Glutamate receptor 3.3	IPR000337 (GPCR, family 3), IPR028082 (Periplasmic binding protein-like I)	GO:0004930 (G-protein coupled receptor activity), GO:0007186 (G-protein coupled receptor signaling pathway), GO:0016021 (integral component of membrane)
Niben101Scf06023g02015.1	sp|P53800|FDFT_NICBE	***-	Squalene synthase	IPR002060 (Squalene/phytoene synthase)	GO:0009058 (biosynthetic process), GO:0016740 (transferase activity)
Niben101Scf03631g00005.1	sp|O24339|CATA_SOLAP	****	Catalase	IPR002226 (Catalase haem-binding site), IPR010582 (Catalase immune-responsive domain), IPR011614 (Catalase core domain), IPR018028 (Catalase, mono-functional, haem-containing), IPR020835 (Catalase-like domain), IPR024708 (Catalase active site)	GO:0004096 (catalase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06094g02015.1	sp|Q41001|BCP_PEA	*-*-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf02215g05004.1	ref|XP_002510336.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF52523.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf02222g00016.1	gb|KEH34562.1|	*-*-	DMT(drug/metabolite transporter) superfamily permease [Medicago truncatula]		
Niben101Scf10103g03016.1	gb|KEH37496.1|	***-	plant/F27B13-30 protein [Medicago truncatula]		
Niben101Scf22015g02042.1			Unknown protein		
Niben101Scf01512g01001.1	AT5G56840.1	***-	myb-like transcription factor family protein LENGTH=233	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00863g17027.1			Unknown protein		
Niben101Scf08247g00002.1	sp|P53305|RT27_YEAST	--*-	Mitochondrial 37S ribosomal protein S27	IPR013219 (Ribosomal protein S27/S33, mitochondrial)	
Niben101Scf01752g06013.1	ref|XP_002885363.1|	****	calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata] gb|EFH61622.1| calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata]	IPR000261 (EPS15 homology (EH)), IPR011992 (EF-hand domain pair), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005525 (GTP binding)
Niben101Scf09357g00013.1	ref|NP_001067715.1|	***-	product [Oryza sativa Japonica Group]	IPR001202 (WW domain)	GO:0005515 (protein binding)
Niben101Scf00048g00003.1	sp|Q94F58|NAC89_ARATH	*-*-	NAC domain-containing protein 89	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07552g00006.1	AT5G48485.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=102	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf01980g06006.1			Unknown protein		
Niben101Scf00398g00005.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf00870g13015.1	AT2G05940.1	*-**	Protein kinase superfamily protein LENGTH=462	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01139g00001.1	AT5G65380.1	*-*-	MATE efflux family protein LENGTH=486	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf12394g02002.1	sp|Q9ZNS1|RS7_AVIMR	***-	40S ribosomal protein S7	IPR000554 (Ribosomal protein S7e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02877g00006.1	sp|Q6DR10|TBL43_ARATH	***-	Protein trichome birefringence-like 43	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf01477g02006.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf02340g08006.1	AT1G11090.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=324	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf11884g00022.1	sp|P49914|MTHFS_HUMAN	***-	5-formyltetrahydrofolate cyclo-ligase	IPR002698 (5-formyltetrahydrofolate cyclo-ligase), IPR024185 (5-formyltetrahydrofolate cyclo-ligase-like domain)	
Niben101Scf00560g10001.1	sp|B9M4V3|NQOR_GEODF	***-	NAD(P)H dehydrogenase (quinone)	IPR010089 (Flavoprotein WrbA), IPR029039 (Flavoprotein-like)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0045892 (negative regulation of transcription, DNA-templated)
Niben101Scf05044g03009.1	sp|Q8LPL2|PTR32_ARATH	*-*-	Protein NRT1/ PTR FAMILY 1.1	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05002g01005.1	sp|F1LZ52|KLHL3_RAT	*-*-	Kelch-like protein 3	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf02968g02016.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00343g04009.1	sp|Q9SZL8|FRS5_ARATH	--*-	Protein FAR1-RELATED SEQUENCE 5		
Niben101Scf05491g05002.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02657g00009.1	sp|Q55G18|POMP_DICDI	***-	Proteasome maturation protein homolog	IPR008012 (Proteasome maturation factor UMP1)	
Niben101Scf11158g00005.1	sp|Q8H038|KATAM_ORYSJ	*-*-	Xyloglucan galactosyltransferase KATAMARI1 homolog		
Niben101Scf09079g02017.1	sp|Q9SJA9|GDL39_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04108g00003.1	AT5G32440.3	***-	Ubiquitin system component Cue protein LENGTH=265		
Niben101Scf00762g00011.1	gb|EXK90496.1|	--**	cellular nucleic acid-binding protein [Fusarium oxysporum f. sp. raphani 54005] gb|EXK90497.1| cellular nucleic acid-binding protein [Fusarium oxysporum f. sp. raphani 54005]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Ctg15075g00005.1	emb|CDY48617.1|	***-	BnaC09g20680D [Brassica napus]	IPR026319 (Zinc finger C2HC domain-containing protein)	
Niben101Scf07563g02008.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03145g07006.1	ref|XP_003614638.1|	*-*-	Monoglyceride lipase [Medicago truncatula] gb|AES97596.1| alpha/beta-hydrolase superfamily protein [Medicago truncatula]		
Niben101Scf01804g00078.1	sp|Q8HQS2|MATK_PINRE	--*-	Maturase K	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf02854g03003.1	gb|AFL46166.1|	***-	jasmonate ZIM domain protein b [Nicotiana attenuata]	IPR010399 (Tify), IPR018467 (CO/COL/TOC1, conserved site)	
Niben101Scf01125g00008.1	AT2G35140.1	*-*-	DCD (Development and Cell Death) domain protein LENGTH=879	IPR013989 (Development/cell death domain)	
Niben101Scf00996g00004.1	AT3G14690.1	*-*-	cytochrome P450, family 72, subfamily A, polypeptide 15 LENGTH=512		
Niben101Scf03756g02016.1	AT4G28390.1	***-	ADP/ATP carrier 3 LENGTH=379	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf10213g00014.1	AT1G17665.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 149 Blast hits to 146 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 21; Fungi - 5; Plants - 30; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). LENGTH=338		
Niben101Scf01596g01024.1			Unknown protein		
Niben101Scf33433g00001.1	AT2G39130.1	***-	Transmembrane amino acid transporter family protein LENGTH=550	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf14882g01008.1	dbj|BAF30984.1|	***-	basic helix-loop-helix protein [Nicotiana tabacum]		
Niben101Scf02816g02008.1	gb|AAT00536.1|	***-	effector of transcription [Brassica napus]		
Niben101Scf08333g07012.1	AT3G10250.1	***-	Plant protein 1589 of unknown function LENGTH=324	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf03331g00008.1	sp|Q22516|CHD3_CAEEL	*-**	Chromodomain-helicase-DNA-binding protein 3 homolog	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf15824g00012.1	AT5G55090.1	****	mitogen-activated protein kinase kinase kinase 15 LENGTH=448	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13640g01002.1	AT2G40260.1	*-*-	Homeodomain-like superfamily protein LENGTH=410	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01479g03011.1	ref|WP_006456841.1|	*-*-	membrane protein [Synechococcus sp. PCC 7335] gb|EDX87057.1| Vitamin K epoxide reductase family [Synechococcus sp. PCC 7335]	IPR012336 (Thioredoxin-like fold)	
Niben101Scf02046g00003.1			Unknown protein		
Niben101Scf03209g00029.1	sp|P34091|RL6_MESCR	***-	60S ribosomal protein L6	IPR000915 (60S ribosomal protein L6E), IPR005568 (Ribosomal protein L6, N-terminal), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Ctg15916g00003.1	sp|Q9SCU0|SDR2A_ARATH	****	Short-chain dehydrogenase reductase 2a	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01300g04001.1	AT2G16890.2	***-	UDP-Glycosyltransferase superfamily protein LENGTH=478	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01476g00014.1	sp|Q2J3I9|RPPH_RHOP2	***-	RNA pyrophosphohydrolase	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf04869g05007.1	emb|CAE05840.2|	*-*-	OSJNBa0091C07.2 [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant), IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf01014g02001.1	AT4G24430.1	*-*-	Rhamnogalacturonate lyase family protein LENGTH=646	IPR008979 (Galactose-binding domain-like)	
Niben101Scf22524g00008.1	sp|O20672|CYB_TOXGO	--*-	Cytochrome b		
Niben101Scf08776g00016.1	sp|Q9VTG7|B3G2P_DROME	*-**	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P	IPR005027 (Glycosyl transferase, family 43), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0015018 (galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity), GO:0016020 (membrane)
Niben101Scf07423g00005.1	sp|Q8TGY9|PGK2_METKA	*-*-	2-phosphoglycerate kinase	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00974g01017.1	sp|Q9M069|E137_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 7	IPR012946 (X8 domain)	
Niben101Scf01005g03003.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf24482g00011.1			Unknown protein		
Niben101Scf03328g02014.1	sp|Q9FZ62|PPSP2_ARATH	***-	Inorganic pyrophosphatase 2	IPR006383 (HAD-superfamily hydrolase, subfamily IB, PSPase-like), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016791 (phosphatase activity)
Niben101Scf03284g07022.1	sp|Q42510|GNOM_ARATH	****	ARF guanine-nucleotide exchange factor GNOM	IPR000904 (Sec7 domain), IPR023394 (Sec7 domain, alpha orthogonal bundle)	GO:0005086 (ARF guanyl-nucleotide exchange factor activity), GO:0032012 (regulation of ARF protein signal transduction)
Niben101Scf02264g06027.1	ref|NP_001052131.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf12470g01002.1	gb|AFW75574.1|	*-**	carboxylic ester hydrolase/ hydrolase, acting on ester bond [Zea mays]	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01596g06006.1	sp|Q9C1W5|TIM16_SCHPO	****	Mitochondrial import inner membrane translocase subunit tim16	IPR005341 (Mitochondrial import inner membrane translocase subunit Tim16)	GO:0005744 (mitochondrial inner membrane presequence translocase complex), GO:0030150 (protein import into mitochondrial matrix)
Niben101Scf03267g00043.1	gb|AHA47115.1|	*-**	NADH dehydrogenase subunit 6 (mitochondrion) [Amborella trichopoda]	IPR001457 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 6), IPR022801 (Ribosomal protein S4/S9)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07826g04008.1	sp|Q9M0G7|PXL2_ARATH	*-*-	Leucine-rich repeat receptor-like protein kinase PXL2	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00428g16010.1	AT4G17010.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=160		
Niben101Scf08533g03004.1	ref|WP_012859087.1|	--*-	D-alanine--D-alanine ligase [Streptobacillus moniliformis] ref|YP_003306417.1| D-alanine--D-alanine ligase [Streptobacillus moniliformis DSM 12112] gb|ACZ01540.1| D-alanine/D-alanine ligase [Streptobacillus moniliformis DSM 12112]		
Niben101Scf06570g05003.1	ref|XP_002509463.1|	*-**	structural constituent of cell wall, putative [Ricinus communis] gb|EEF50850.1| structural constituent of cell wall, putative [Ricinus communis]	IPR003882 (Pistil-specific extensin-like protein), IPR006041 (Pollen Ole e 1 allergen/extensin)	GO:0005199 (structural constituent of cell wall)
Niben101Scf03446g05003.1	AT1G43710.1	****	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein LENGTH=482	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf25485g00018.1			Unknown protein		
Niben101Scf10314g03011.1	gb|AAM63663.1|	***-	FKBP-type peptidyl-prolyl cis-trans isomerase, putative [Arabidopsis thaliana]	IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf01731g09009.1	sp|Q9SIT5|CHX15_ARATH	****	Cation/H(+) antiporter 15	IPR006153 (Cation/H+ exchanger), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf16768g01006.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03820g02007.1	sp|Q8LG50|LPAT2_ARATH	*-**	1-acyl-sn-glycerol-3-phosphate acyltransferase 2	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf00274g03001.1	AT1G04140.2	***-	Transducin family protein / WD-40 repeat family protein LENGTH=793	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01497g03018.1			Unknown protein		
Niben101Scf01175g02014.1	sp|F4HPR5|DRP5A_ARATH	***-	Dynamin-related protein 5A	IPR001401 (Dynamin, GTPase domain), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf01799g02008.1	emb|CDY03722.1|	***-	BnaA02g15150D [Brassica napus]	IPR019308 (Protein of unknown function DUF2359, TMEM214)	
Niben101Scf25326g00002.1	sp|Q2YSD6|CLPC_STAAB	*-*-	ATP-dependent Clp protease ATP-binding subunit ClpC	IPR004176 (Clp, N-terminal), IPR023150 (Double Clp-N motif)	GO:0019538 (protein metabolic process)
Niben101Scf14564g00003.1	sp|Q6AVI0|RSLE2_ORYSJ	***-	Zinc finger BED domain-containing protein RICESLEEPER 2	IPR003656 (Zinc finger, BED-type), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding)
Niben101Scf04212g00011.1	sp|P42791|RL182_ARATH	*-*-	60S ribosomal protein L18-2	IPR000039 (Ribosomal protein L18e), IPR021131 (Ribosomal protein L18e/L15P)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07761g00004.1	sp|O80341|EF102_ARATH	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04829g02016.1	sp|Q9XEX2|PRX2B_ARATH	***-	Peroxiredoxin-2B	IPR012336 (Thioredoxin-like fold)	GO:0016491 (oxidoreductase activity)
Niben101Scf06869g00004.1	emb|CDY26733.1|	***-	BnaA06g12890D [Brassica napus]	IPR008511 (Protein BYPASS-related)	
Niben101Scf06202g00001.1			Unknown protein		
Niben101Scf11684g01012.1	emb|CDY04465.1|	***-	BnaA07g12910D [Brassica napus]		
Niben101Scf00338g06011.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00799g04010.1	sp|Q9D0F6|RFC5_MOUSE	****	Replication factor C subunit 5	IPR003959 (ATPase, AAA-type, core), IPR008921 (DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006260 (DNA replication)
Niben101Scf06876g01034.1	AT5G27980.1	***-	Seed maturation protein LENGTH=192	IPR007011 (Seed maturation protein)	
Niben101Ctg09057g00001.1	sp|Q8L5Z7|SNX2A_ARATH	*-*-	Sorting nexin 2A		
Niben101Scf00080g00010.1	AT4G07410.1	***-	Transducin family protein / WD-40 repeat family protein LENGTH=815	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf07170g02006.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03944g04008.1	sp|Q83F28|MURE_COXBU	--*-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase		
Niben101Scf15972g02016.1	sp|Q8RX28|HDA5_ARATH	*-*-	Histone deacetylase 5	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	
Niben101Scf04327g02002.1	gb|ABB46758.1|	*-*-	proline-rich protein, putative, expressed [Oryza sativa Japonica Group]	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf04191g02001.1	AT1G59650.1	***-	Protein of unknown function (DUF1336) LENGTH=492	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf03702g03009.1			Unknown protein		
Niben101Scf07365g00011.1	gb|AIU49989.1|	*-*-	tunicamycin induced 1, partial [Arabidopsis thaliana]		
Niben101Scf08653g05005.1	sp|O64380|PABP3_ARATH	*-**	Polyadenylate-binding protein 3	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00887g05013.1	gb|AGV75925.1|	--*-	CFE protein [Gossypium barbadense]		
Niben101Scf04860g04008.1	emb|CDY50532.1|	***-	BnaA01g30480D [Brassica napus]		
Niben101Scf01911g13015.1	sp|O82811|NRT21_ARATH	***-	High-affinity nitrate transporter 2.1	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf05017g04014.1	gb|AAF18624.1|	--*-	En/Spm-like transposon protein [Arabidopsis thaliana]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf08664g00003.1	AT2G07734.1	*-**	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein LENGTH=362	IPR002942 (RNA-binding S4 domain), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding)
Niben101Scf09538g00008.1	sp|Q8W4I4|POT6_ARATH	****	Potassium transporter 6	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf01825g02013.1			Unknown protein		
Niben101Scf06286g03008.1	sp|Q8GW32|PRE6_ARATH	***-	Transcription factor PRE6	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00436g03005.1	ref|XP_007016884.1|	***-	Domain of Uncharacterized protein function isoform 4 [Theobroma cacao] gb|EOY34503.1| Domain of Uncharacterized protein function isoform 4 [Theobroma cacao]	IPR010369 (Protein of unknown function DUF966)	
Niben101Scf04418g04003.1	sp|Q9SJ56|BLH1_ARATH	***-	BEL1-like homeodomain protein 1	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00264g02002.1	emb|CDY20399.1|	***-	BnaC02g24170D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf01756g01011.1	gb|KEH18769.1|	***-	ABIL1-like protein [Medicago truncatula]	IPR028457 (ABI family)	
Niben101Scf00085g01019.1	AT3G44510.2	***-	alpha/beta-Hydrolases superfamily protein LENGTH=325	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03737g06010.1			Unknown protein		
Niben101Scf11361g01014.1	AT1G62770.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=204	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf01497g01002.1			Unknown protein		
Niben101Scf00383g03004.1	sp|Q9D9Q0|LRC69_MOUSE	--*-	Leucine-rich repeat-containing protein 69	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00973g00011.1	ref|XP_002524703.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37722.1| conserved hypothetical protein [Ricinus communis]	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05373g01004.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf00870g16009.1	emb|CDY60739.1|	***-	BnaA07g35980D [Brassica napus]	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf01269g09009.1	ref|XP_007020813.1|	***-	RNI-like superfamily protein isoform 1 [Theobroma cacao] gb|EOY12338.1| RNI-like superfamily protein isoform 1 [Theobroma cacao]		
Niben101Scf02290g00004.1	AT5G53130.1	****	cyclic nucleotide gated channel 1 LENGTH=716	IPR005821 (Ion transport domain), IPR014710 (RmlC-like jelly roll fold)	GO:0005216 (ion channel activity), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02827g06001.1	ref|XP_002529585.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF32819.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04010g01006.1	sp|Q9SDA8|FBL10_ARATH	*-*-	F-box/LRR-repeat protein 10	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf00219g00004.1	ref|XP_007017255.1|	****	Calcium-binding EF-hand family protein, putative [Theobroma cacao] gb|EOY14480.1| Calcium-binding EF-hand family protein, putative [Theobroma cacao]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01866g01002.1	AT3G43520.1	*-*-	Transmembrane proteins 14C LENGTH=240	IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane)
Niben101Scf02289g00001.1			Unknown protein		
Niben101Scf03978g01002.1	sp|Q9LPI5|CID11_ARATH	*-**	Polyadenylate-binding protein-interacting protein 11	IPR009818 (Ataxin-2, C-terminal), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf13231g03016.1	ref|NP_001052354.1|	*-*-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf22376g00011.1	AT5G07250.1	***-	RHOMBOID-like protein 3 LENGTH=346	IPR002610 (Peptidase S54, rhomboid)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf07244g03023.1	AT2G42850.1	***-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08488g02011.1	sp|Q06721|RCA_ANASC	*-*-	Ribulose bisphosphate carboxylase/oxygenase activase	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01176g01026.1	sp|Q93YT1|GLR32_ARATH	*-**	Glutamate receptor 3.2	IPR001320 (Ionotropic glutamate receptor)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf19623g00003.1	AT1G26850.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=616	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf06823g02005.1	AT3G19540.1	***-	Protein of unknown function (DUF620) LENGTH=485	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf01959g05015.1	sp|Q8NCS7|CTL5_HUMAN	*-*-	Choline transporter-like protein 5	IPR007603 (Choline transporter-like)	
Niben101Scf05618g05002.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01105g02002.1	sp|Q9ZUA0|OST1B_ARATH	****	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B	IPR007676 (Ribophorin I)	GO:0004579 (dolichyl-diphosphooligosaccharide-protein glycotransferase activity), GO:0005783 (endoplasmic reticulum), GO:0006486 (protein glycosylation), GO:0016021 (integral component of membrane)
Niben101Scf02407g04009.1	AT3G60260.1	*-*-	ELMO/CED-12 family protein LENGTH=266		
Niben101Scf03227g05016.1	AT1G58030.1	****	cationic amino acid transporter 2 LENGTH=635	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf00164g01002.1	emb|CDY04229.1|	***-	BnaC06g25860D [Brassica napus]		
Niben101Scf00180g10016.1	gb|KEH43480.1|	***-	microtubule organization protein [Medicago truncatula]	IPR016024 (Armadillo-type fold), IPR024395 (CLASP N-terminal domain)	GO:0005488 (binding)
Niben101Scf05664g00001.1	AT2G47910.1	***-	chlororespiratory reduction 6 LENGTH=246	IPR014946 (Protein of unknown function DUF1817)	
Niben101Scf00570g02007.1	ref|XP_007033350.1|	***-	Decapping 5, putative isoform 4 [Theobroma cacao] gb|EOY04276.1| Decapping 5, putative isoform 4 [Theobroma cacao]	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf00448g12001.1	sp|Q5E930|SLAH1_ARATH	****	S-type anion channel SLAH1	IPR004695 (Voltage-dependent anion channel)	GO:0006873 (cellular ion homeostasis), GO:0008308 (voltage-gated anion channel activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01323g05004.1	AT1G61890.1	***-	MATE efflux family protein LENGTH=501	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf07720g00028.1	ref|NP_191672.1|	****	alpha-1,4-galacturon [Arabidopsis thaliana] emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gb|AHL38722.1| glycosyltransferase, partial [Arabidopsis thaliana]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf04191g04019.1	sp|Q9XIE6|ALA3_ARATH	****	Phospholipid-transporting ATPase 3	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Ctg02849g00004.1			Unknown protein		
Niben101Scf00069g14007.1	emb|CDX68330.1|	***-	BnaA07g23700D [Brassica napus]		
Niben101Scf01415g03011.1	sp|P74122|ARGJ_SYNY3	*-**	Arginine biosynthesis bifunctional protein ArgJ	IPR002813 (Arginine biosynthesis protein ArgJ)	GO:0004358 (glutamate N-acetyltransferase activity), GO:0006526 (arginine biosynthetic process)
Niben101Scf00854g08050.1	ref|WP_028396628.1|	--*-	ribonuclease H [Bacillus sp. FJAT-14578]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf00372g01002.1			Unknown protein		
Niben101Scf16915g00005.1	sp|Q27450|CYP1_BRUMA	*-**	Peptidyl-prolyl cis-trans isomerase 1	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf03128g07003.1	sp|Q43872|PER64_ARATH	*-**	Peroxidase 64	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07000g00002.1	sp|Q9BUY5|ZN426_HUMAN	--*-	Zinc finger protein 426	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR029789 (Protein TRANSPARENT TESTA 1 like)	GO:0003676 (nucleic acid binding)
Niben101Scf05629g01007.1	sp|Q9SHK2|PPR17_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06671g03018.1	sp|Q557G3|TPPC1_DICDI	*-*-	Trafficking protein particle complex subunit 1	IPR007233 (Sybindin-like protein)	GO:0005801 (cis-Golgi network), GO:0006810 (transport), GO:0006888 (ER to Golgi vesicle-mediated transport)
Niben101Scf02803g03010.1	sp|A7SGF0|MF2NB_NEMVE	--*-	Protein MEF2BNB homolog	IPR019320 (Uncharacterised protein family UPF0402)	
Niben101Scf12320g03004.1	AT5G12410.1	***-	THUMP domain-containing protein LENGTH=376	IPR004114 (THUMP)	GO:0003723 (RNA binding)
Niben101Scf07805g02009.1	sp|O75400|PR40A_HUMAN	***-	Pre-mRNA-processing factor 40 homolog A	IPR001202 (WW domain), IPR002713 (FF domain), IPR027237 (Pre-mRNA-processing protein PRP40)	GO:0005515 (protein binding)
Niben101Scf03264g05003.1	sp|Q8X5V6|DUSA_ECO57	****	tRNA-dihydrouridine synthase A	IPR001269 (tRNA-dihydrouridine synthase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008033 (tRNA processing), GO:0017150 (tRNA dihydrouridine synthase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07914g01019.1	AT3G03680.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1017	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf09075g03002.1	AT5G65730.1	****	xyloglucan endotransglucosylase/hydrolase 6 LENGTH=292	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Ctg00116g00002.1	gb|KEH24346.1|	*-*-	sister-chromatide cohesion protein [Medicago truncatula]		
Niben101Scf09130g05009.1	sp|Q9CAJ0|P2C16_ARATH	****	Protein phosphatase 2C 16	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf01061g06009.1	sp|Q12S35|RHLB_SHEDO	****	ATP-dependent RNA helicase RhlB	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf17787g00012.1	sp|Q3B0I3|ACP_SYNS9	***-	Acyl carrier protein	IPR003231 (Acyl carrier protein (ACP)), IPR009081 (Acyl carrier protein-like)	GO:0006633 (fatty acid biosynthetic process)
Niben101Scf01076g05028.1	sp|Q84MC7|PYL9_ARATH	***-	Abscisic acid receptor PYL9	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf04518g00008.1	sp|P0A4V9|FTSH_MYCBO	****	ATP-dependent zinc metalloprotease FtsH	IPR000642 (Peptidase M41), IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis)
Niben101Scf07567g01008.1	AT1G55210.1	*-*-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=187	IPR004265 (Plant disease resistance response protein)	
Niben101Scf04011g05003.1	AT5G04330.1	*-*-	Cytochrome P450 superfamily protein LENGTH=512	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08026g01007.1	AT2G33620.1	*-**	AT hook motif DNA-binding family protein LENGTH=351	IPR005175 (Domain of unknown function DUF296), IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Scf02595g05003.1	gb|ACG40676.1|	***-	p8MTCP1 [Zea mays]	IPR009069 (Cysteine alpha-hairpin motif superfamily), IPR010625 (CHCH)	
Niben101Scf01215g01010.1	sp|P41568|SUI11_ARATH	****	Protein translation factor SUI1 homolog 1	IPR005874 (Eukaryotic translation initiation factor SUI1)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf01489g01002.1	sp|G5CEW6|IF4G_WHEAT	*-*-	Eukaryotic translation initiation factor 4G	IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02043g02002.1	sp|B9JZ89|DNAJ_AGRVS	***-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Ctg13237g00004.1			Unknown protein		
Niben101Scf10613g00009.1	sp|A9WNI5|MSHD_RENSM	--**	Mycothiol acetyltransferase	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf01539g00006.1	AT1G79770.1	***-	Protein of unknown function (DUF1677) LENGTH=167	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf07162g05024.1	sp|Q9SKQ4|PP167_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf08433g00013.1	sp|Q9FE06|EXOL2_ARATH	*-*-	Protein EXORDIUM-like 2	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf07353g02009.1	ref|WP_026032496.1|	*-*-	TenA family transcriptional regulator [Prochlorococcus sp. W7]	IPR016084 (Haem oxygenase-like, multi-helical), IPR023214 (HAD-like domain)	
Niben101Scf00421g01025.1	sp|P27644|PGLR_RHIRD	*-**	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07672g00014.1	sp|O82797|PCNA_TOBAC	***-	Proliferating cell nuclear antigen	IPR000730 (Proliferating cell nuclear antigen, PCNA)	GO:0003677 (DNA binding), GO:0006275 (regulation of DNA replication), GO:0030337 (DNA polymerase processivity factor activity)
Niben101Scf03412g01019.1	sp|P0C7A1|ENASE_CHICK	*-**	Cytosolic endo-beta-N-acetylglucosaminidase	IPR005201 (Glycoside hydrolase, family 85)	GO:0005737 (cytoplasm), GO:0033925 (mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity)
Niben101Scf12628g01004.1	sp|Q54EH1|EPN_DICDI	*-*-	Epsin	IPR008942 (ENTH/VHS)	
Niben101Scf15836g04006.1	sp|P40024|ARB1_YEAST	****	ABC transporter ATP-binding protein ARB1	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf00245g00005.1	sp|Q9QY93|DCTP1_MOUSE	***-	dCTP pyrophosphatase 1	IPR004518 (NTP pyrophosphohydrolase MazG, putative catalytic core)	
Niben101Scf06789g04021.1	sp|Q9XFH4|DDM1_ARATH	****	ATP-dependent DNA helicase DDM1	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029295 (Snf2 ATP coupling domain)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0042393 (histone binding)
Niben101Scf02172g06001.1	AT5G61260.1	*-**	Plant calmodulin-binding protein-related LENGTH=496	IPR012417 (Calmodulin-binding domain, plant)	GO:0005516 (calmodulin binding)
Niben101Scf02914g02029.1	sp|P63011|RAB3A_MOUSE	--*-	Ras-related protein Rab-3A	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf04231g00002.1	sp|Q9SHY8|SLU7A_ARATH	--*-	Pre-mRNA-splicing factor SLU7-A	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf00557g00008.1	ref|XP_003590923.1|	*-*-	Ammonium transporter [Medicago truncatula]		
Niben101Scf05712g02022.1	AT1G14060.1	*-*-	GCK domain-containing protein LENGTH=179	IPR012891 (GCK)	
Niben101Scf02537g02001.1	sp|Q9S7L9|CX6B1_ARATH	****	Cytochrome c oxidase subunit 6b-1	IPR003213 (Cytochrome c oxidase, subunit VIb)	GO:0004129 (cytochrome-c oxidase activity), GO:0005739 (mitochondrion)
Niben101Scf08127g02002.1	sp|P05100|3MG1_ECOLI	*-**	DNA-3-methyladenine glycosylase 1	IPR005019 (Methyladenine glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0008725 (DNA-3-methyladenine glycosylase activity)
Niben101Scf00456g00010.1	sp|Q9LV33|BGL44_ARATH	***-	Beta-glucosidase 44	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf27837g00007.1	AT5G51150.1	*-*-	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein LENGTH=531		
Niben101Scf03375g01006.1	sp|P22071|3BHS1_RAT	****	3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1	IPR003388 (Reticulon), IPR016040 (NAD(P)-binding domain)	GO:0003854 (3-beta-hydroxy-delta5-steroid dehydrogenase activity), GO:0006694 (steroid biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf03514g00004.1	AT2G41475.1	***-	Embryo-specific protein 3, (ATS3) LENGTH=179	IPR010417 (Embryo-specific 3)	GO:0005515 (protein binding)
Niben101Scf02904g00016.1	sp|Q93VY3|NAC72_ARATH	*-*-	NAC domain-containing protein 72	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03671g03021.1	AT2G37870.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=115	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00899g01009.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01847g09012.1	sp|Q9S836|LAX2_ARATH	***-	Auxin transporter-like protein 2	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf10314g04006.1	sp|Q5E9G1|P2R3C_BOVIN	***-	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma	IPR011992 (EF-hand domain pair)	
Niben101Scf05620g01002.1	sp|Q8RU27|UPTG2_SOLTU	***-	Alpha-1,4-glucan-protein synthase [UDP-forming] 2	IPR004901 (Reversibly glycosylated polypeptide family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016866 (intramolecular transferase activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf36071g00003.1	sp|Q69KJ0|RTL3_ORYSJ	*-**	Ribonuclease 3-like protein 3	IPR000999 (Ribonuclease III domain), IPR005034 (Dicer dimerisation domain)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0006396 (RNA processing), GO:0016891 (endoribonuclease activity, producing 5'-phosphomonoesters)
Niben101Scf00046g01018.1	gb|AHB32112.1|	***-	chalcone isomerase [Camellia sinensis]	IPR016087 (Chalcone isomerase)	GO:0016872 (intramolecular lyase activity)
Niben101Scf00348g04008.1	emb|CDY44680.1|	***-	BnaA05g29260D [Brassica napus]		
Niben101Scf00212g01022.1			Unknown protein	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf03018g11001.1	ref|XP_002517792.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF44599.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02706g04002.1			Unknown protein		
Niben101Scf01892g02004.1	ref|XP_002531239.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF31136.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07729g01001.1	AT5G57840.1	****	HXXXD-type acyl-transferase family protein LENGTH=443	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf15533g00020.1	sp|Q5YDB6|CPL1_ARATH	***-	RNA polymerase II C-terminal domain phosphatase-like 1	IPR004274 (NLI interacting factor), IPR014720 (Double-stranded RNA-binding domain), IPR023214 (HAD-like domain)	GO:0005515 (protein binding)
Niben101Scf02589g00002.1	sp|Q4P733|DED1_USTMA	*-**	ATP-dependent RNA helicase DED1	IPR001202 (WW domain), IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf06525g00025.1	sp|Q8T2T7|TOP3_DICDI	****	DNA topoisomerase 3	IPR000380 (DNA topoisomerase, type IA), IPR023405 (DNA topoisomerase, type IA, core domain), IPR023406 (DNA topoisomerase, type IA, active site)	GO:0003677 (DNA binding), GO:0003916 (DNA topoisomerase activity), GO:0003917 (DNA topoisomerase type I activity), GO:0006265 (DNA topological change)
Niben101Scf04724g00008.1	gb|AAS07174.1|	***-	expressed protein [Oryza sativa Japonica Group] gb|ABF97302.1| expressed protein [Oryza sativa Japonica Group] gb|ABF97303.1| expressed protein [Oryza sativa Japonica Group]		
Niben101Scf06081g02020.1	AT5G22460.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=340	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01005g06005.1	sp|O65934|ABC1_MYCTU	--**	ABC transporter ATP-binding/permease protein Rv1747	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf00593g03003.1			Unknown protein		
Niben101Scf04036g05009.1			Unknown protein		
Niben101Scf11709g01025.1	sp|Q5RCF8|DHRS4_PONAB	****	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf06678g01003.1	AT2G40710.1	*-**	Haemolysin-III related integral membrane protein LENGTH=93	IPR004254 (AdipoR/Haemolysin-III-related)	GO:0016021 (integral component of membrane)
Niben101Scf05173g09004.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11168g00001.1	AT1G23480.1	***-	cellulose synthase-like A3 LENGTH=556	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf04151g00003.1	emb|CDY25730.1|	***-	BnaC03g69450D [Brassica napus]		
Niben101Scf07255g00009.1	sp|Q9CAJ9|Y1385_ARATH	***-	BTB/POZ domain-containing protein		
Niben101Scf01777g03010.1	AT2G36770.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf09649g01011.1	AT1G34020.1	***-	Nucleotide-sugar transporter family protein LENGTH=335	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf01922g04004.1	AT2G33205.1	***-	Serinc-domain containing serine and sphingolipid biosynthesis protein LENGTH=422	IPR005016 (Serine incorporator/TMS membrane protein)	GO:0016020 (membrane)
Niben101Scf04404g04005.1	gb|ABA98854.1|	--*-	transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa Japonica Group]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf04408g00004.1	sp|Q9M325|IPCS1_ARATH	***-	Phosphatidylinositol:ceramide inositolphosphotransferase 1	IPR025749 (Sphingomyelin synthase-like domain)	
Niben101Scf16974g00008.1	AT4G28220.1	***-	NAD(P)H dehydrogenase B1 LENGTH=571	IPR011992 (EF-hand domain pair), IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0005509 (calcium ion binding), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07672g00015.1	sp|O82797|PCNA_TOBAC	*-*-	Proliferating cell nuclear antigen	IPR000730 (Proliferating cell nuclear antigen, PCNA)	GO:0003677 (DNA binding), GO:0006275 (regulation of DNA replication), GO:0030337 (DNA polymerase processivity factor activity)
Niben101Scf00472g02003.1	sp|Q9M9S0|ZHD4_ARATH	***-	Zinc-finger homeodomain protein 4	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf03026g08002.1	AT2G22125.1	****	binding LENGTH=2150	IPR000008 (C2 domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf16542g01002.1			Unknown protein		
Niben101Scf01679g01006.1	emb|CDY24256.1|	***-	BnaC03g42290D [Brassica napus]		
Niben101Scf02652g01028.1	AT4G22850.1	***-	SNARE associated Golgi protein family LENGTH=296		
Niben101Scf02929g01017.1	ref|XP_002534699.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF27685.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03937g03006.1	sp|P49755|TMEDA_HUMAN	***-	Transmembrane emp24 domain-containing protein 10	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf01497g04011.1	ref|WP_022460617.1|	*-**	s1 RNA binding domain protein [Alistipes putredinis CAG:67] emb|CDE66033.1| s1 RNA binding domain protein [Alistipes putredinis CAG:67]	IPR019307 (RNA-binding protein AU-1/Ribonuclease E/G)	GO:0003723 (RNA binding)
Niben101Scf00542g04012.1	sp|Q8GUM5|NICA_ARATH	***-	Nicastrin	IPR008710 (Nicastrin)	GO:0016021 (integral component of membrane), GO:0016485 (protein processing)
Niben101Scf04020g03008.1	sp|Q21988|AMX1_CAEEL	***-	Amine oxidase family member 1	IPR002937 (Amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00383g01002.1			Unknown protein		
Niben101Scf03128g07001.1	sp|Q3ECM4|GDL25_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf14939g01038.1			Unknown protein		
Niben101Scf01807g01014.1	emb|CDY01820.1|	***-	BnaC06g28600D [Brassica napus]	IPR021924 (Protein of unknown function DUF3537)	
Niben101Scf08102g00002.1	AT1G48480.1	*-**	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02528g00008.1	gb|KEH32345.1|	--*-	DUF4283 domain protein [Medicago truncatula]		
Niben101Scf05618g03008.1	sp|Q94KT8|COBRA_ARATH	***-	Protein COBRA	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf04813g00009.1	sp|Q8S9M3|GRF9_ARATH	***-	Growth-regulating factor 9	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf06589g00011.1	emb|CDY52539.1|	***-	BnaC02g43900D [Brassica napus]	IPR019314 (Protein of unknown function DUF2365)	
Niben101Scf09416g01004.1	sp|Q4IJ84|RAD5_GIBZE	****	DNA repair protein RAD5	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014905 (HIRAN domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Ctg16032g00005.1	sp|A7FHJ7|MDTK_YERP3	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02944g02001.1	sp|O14717|TRDMT_HUMAN	****	tRNA (cytosine(38)-C(5))-methyltransferase	IPR001525 (C-5 cytosine methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf20887g00017.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02511g03013.1	AT2G46320.1	***-	Mitochondrial substrate carrier family protein LENGTH=361	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf01068g04003.1	emb|CDX75752.1|	*-*-	BnaC03g38350D [Brassica napus]		
Niben101Scf03437g01021.1	sp|Q2YQT8|PSTB_BRUA2	****	Phosphate import ATP-binding protein PstB	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf07638g03014.1	AT4G32330.1	***-	TPX2 (targeting protein for Xklp2) protein family LENGTH=437	IPR027329 (TPX2, C-terminal domain)	
Niben101Scf01514g04018.1	sp|O48965|IDI2_CAMAC	****	Isopentenyl-diphosphate Delta-isomerase II	IPR011876 (Isopentenyl-diphosphate delta-isomerase, type 1), IPR015797 (NUDIX hydrolase domain-like)	GO:0004452 (isopentenyl-diphosphate delta-isomerase activity), GO:0008299 (isoprenoid biosynthetic process), GO:0016787 (hydrolase activity)
Niben101Scf02123g10015.1	sp|Q7XKV5|BGL11_ORYSJ	***-	Beta-glucosidase 11	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03129g06001.1	sp|Q1GAQ0|EFTU_LACDA	*-*-	Elongation factor Tu	IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR019756 (Peptidase S26A, signal peptidase I, serine active site), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0008236 (serine-type peptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf01959g05013.1	sp|Q7XWU8|EXPA1_ORYSJ	***-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf10834g00005.1	sp|Q67P26|SYN_SYMTH	****	Asparagine--tRNA ligase	IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004815 (aspartate-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006422 (aspartyl-tRNA aminoacylation)
Niben101Scf04318g01015.1	sp|Q5SLW9|DNAJ1_THET8	--*-	Chaperone protein DnaJ 1		
Niben101Scf14958g00033.1	sp|P97496|SMRC1_MOUSE	*-*-	SWI/SNF complex subunit SMARCC1	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf06804g00002.1	AT4G18975.1	*-*-	Pentatricopeptide repeat (PPR) superfamily protein LENGTH=287		
Niben101Scf05875g00013.1	sp|Q9SA38|OCT3_ARATH	****	Organic cation/carnitine transporter 3	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04362g05001.1	ref|XP_002524585.1|	-***	nucleic acid binding protein, putative [Ricinus communis] gb|EEF37793.1| nucleic acid binding protein, putative [Ricinus communis]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf06975g00020.1	sp|P44443|RNE_HAEIN	*-**	Ribonuclease E	IPR012340 (Nucleic acid-binding, OB-fold), IPR019307 (RNA-binding protein AU-1/Ribonuclease E/G)	GO:0003723 (RNA binding), GO:0004540 (ribonuclease activity), GO:0006396 (RNA processing)
Niben101Scf01494g06004.1	sp|P59047|NALP5_HUMAN	*-*-	NACHT, LRR and PYD domains-containing protein 5	IPR003590 (Leucine-rich repeat, ribonuclease inhibitor subtype)	
Niben101Scf07829g03012.1	sp|Q9FHM9|EXOL3_ARATH	*-*-	Protein EXORDIUM-like 3	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf12083g00010.1	sp|Q9LNU4|PSD3A_ARATH	****	26S proteasome non-ATPase regulatory subunit 3 homolog A	IPR000717 (Proteasome component (PCI) domain), IPR013143 (PCI/PINT associated module), IPR013586 (26S proteasome regulatory subunit, C-terminal)	GO:0000502 (proteasome complex), GO:0005515 (protein binding), GO:0030234 (enzyme regulator activity), GO:0042176 (regulation of protein catabolic process)
Niben101Scf01063g09017.1	AT5G17170.1	*-*-	rubredoxin family protein LENGTH=271	IPR001478 (PDZ domain), IPR004039 (Rubredoxin-type fold)	GO:0005515 (protein binding)
Niben101Scf00109g08029.1	sp|Q89AF2|FTSH_BUCBP	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR015415 (Vps4 oligomerisation, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf03392g10005.1	AT3G59770.3	***-	sacI homology domain-containing protein / WW domain-containing protein LENGTH=1646	IPR001202 (WW domain), IPR002013 (SAC domain)	GO:0005515 (protein binding), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf11178g02001.1	sp|B0C2J3|RS18_ACAM1	*-*-	30S ribosomal protein S18	IPR001648 (Ribosomal protein S18)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02407g04008.1	sp|Q9ZUU0|WRK44_ARATH	*-**	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01687g02010.1	AT3G24750.1	*-*-	unknown protein; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=169		
Niben101Scf04403g03019.1	gb|KEH42602.1|	-***	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf06113g00016.1	sp|Q09433|THIO1_CAEEL	***-	Thioredoxin-1	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03294g00002.1	sp|Q9FLS0|FB253_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf07790g00006.1	sp|Q9LJU0|CBL10_ARATH	***-	COBRA-like protein 10	IPR006918 (COBRA, plant), IPR012291 (Cellulose-binding family II/chitobiase, carbohydrate-binding domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0030247 (polysaccharide binding), GO:0031225 (anchored component of membrane)
Niben101Scf02968g06002.1	sp|Q9LFQ3|SNL2_ARATH	*-*-	Paired amphipathic helix protein Sin3-like 2	IPR003822 (Paired amphipathic helix), IPR013194 (Histone deacetylase interacting)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07880g00001.1	ref|NP_001078298.1|	--*-	protein ROTUNDIFOLIA like 7 [Arabidopsis thaliana] tpg|DAA02279.1| TPA_exp: DVL8 [Arabidopsis thaliana] gb|AEE79395.1| protein rotundifolia like 7 [Arabidopsis thaliana]	IPR012552 (DVL)	
Niben101Scf00819g11001.1	AT3G56210.5	***-	ARM repeat superfamily protein LENGTH=193	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00420g01013.1	sp|Q92616|GCN1L_HUMAN	***-	Translational activator GCN1	IPR016024 (Armadillo-type fold), IPR026827 (Proteasome component ECM29/Translational activator GCN1)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf01926g05010.1	sp|P49297|ACEA_SOLLC	****	Isocitrate lyase	IPR006254 (Isocitrate lyase)	GO:0003824 (catalytic activity), GO:0004451 (isocitrate lyase activity), GO:0008152 (metabolic process), GO:0019752 (carboxylic acid metabolic process)
Niben101Scf05378g01009.1	ref|XP_002528159.1|	--*-	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis] gb|EEF34250.1| Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]		
Niben101Scf05348g01022.1	AT1G12480.1	****	C4-dicarboxylate transporter/malic acid transport protein LENGTH=556	IPR004695 (Voltage-dependent anion channel)	GO:0006873 (cellular ion homeostasis), GO:0008308 (voltage-gated anion channel activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03121g04010.1	ref|WP_026731445.1|	****	GCN5 family acetyltransferase [Fischerella sp. PCC 9605]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf02881g03005.1	gb|KEH27032.1|	***-	DUF1666 family protein [Medicago truncatula]	IPR008195 (Ribosomal protein L34Ae), IPR012870 (Protein of unknown function DUF1666)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01190g01002.1	emb|CDX82023.1|	*-*-	BnaC08g35780D [Brassica napus]		
Niben101Scf06583g04008.1	AT5G27930.1	***-	Protein phosphatase 2C family protein LENGTH=373	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf03056g02025.1			Unknown protein		
Niben101Scf01433g02007.1	sp|Q9FVX1|GRXC3_ARATH	***-	Glutaredoxin-C3	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf11706g00004.1	gb|EMS46585.1|	*-*-	U-box domain-containing protein 33 [Triticum urartu]	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	
Niben101Scf03012g01001.1			Unknown protein		
Niben101Scf08716g01027.1	AT5G12180.1	****	calcium-dependent protein kinase 17 LENGTH=528	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00647g01015.1			Unknown protein		
Niben101Scf02517g19005.1	emb|CDY54506.1|	*-*-	BnaA02g35690D [Brassica napus]		
Niben101Scf01628g01003.1	ref|NP_001177005.1|	*-*-	OsJ_36291 [Oryza sativa Japonica Group] dbj|BAH95733.1| [Oryza sativa Japonica Group]		
Niben101Scf05720g03002.1	sp|Q9UTK8|GMT_SCHPO	--*-	GDP-mannose transporter		
Niben101Scf03702g03007.1			Unknown protein		
Niben101Scf03962g01014.1	ref|NP_001046162.1|	--*-	product [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf04117g02005.1	sp|P27898|MYBP_MAIZE	*-*-	Myb-related protein P	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02659g01005.1	sp|A8H1G3|G6PI_SHEPA	****	Glucose-6-phosphate isomerase	IPR001672 (Phosphoglucose isomerase (PGI))	GO:0004347 (glucose-6-phosphate isomerase activity), GO:0006094 (gluconeogenesis), GO:0006096 (glycolytic process)
Niben101Scf00779g03002.1	AT5G05310.3	****	TLC ATP/ADP transporter LENGTH=511	IPR004667 (ADP/ATP carrier protein)	GO:0005471 (ATP:ADP antiporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf03867g01014.1	sp|Q71N54|LCAT4_ARATH	*-**	Lecithin-cholesterol acyltransferase-like 4	IPR003386 (Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase)	GO:0006629 (lipid metabolic process), GO:0008374 (O-acyltransferase activity)
Niben101Scf06769g01009.1	sp|O81277|PSK5_ORYSJ	--*-	Phytosulfokines 5	IPR009438 (Phytosulfokine)	GO:0005576 (extracellular region), GO:0008083 (growth factor activity), GO:0008283 (cell proliferation)
Niben101Scf02929g03013.1			Unknown protein		
Niben101Scf01623g02014.1	sp|Q9LUQ6|RL192_ARATH	***-	60S ribosomal protein L19-2	IPR000196 (Ribosomal protein L19/L19e domain), IPR023638 (Ribosomal protein L19/L19e conserved site), IPR027547 (Ribosomal protein L19/L19e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00225g04006.1	gb|ABY88553.1|	***-	NHL1, partial [Arabidopsis thaliana]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf00577g09002.1	ref|WP_006797798.1|	--*-	DNA mismatch repair protein [Dysgonomonas gadei] gb|EGJ99262.1| hypothetical protein HMPREF9455_00295 [Dysgonomonas gadei ATCC BAA-286]		
Niben101Scf13622g01030.1	sp|Q9C895|BRE1B_ARATH	*-*-	E3 ubiquitin-protein ligase BRE1-like 2		
Niben101Scf00491g03003.1	sp|Q9LS46|ALMT9_ARATH	****	Aluminum-activated malate transporter 9	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf08776g00015.1	emb|CDY71261.1|	*-*-	BnaCnng72080D, partial [Brassica napus]		
Niben101Scf10144g01021.1	AT1G72300.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1095	IPR025875 (Leucine rich repeat 4)	
Niben101Scf09696g01037.1	ref|XP_002536610.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF25773.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08683g00026.1	sp|P34102|PK3_DICDI	--**	Protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03461g05022.1	gb|AAU95633.1|	*-*-	R1 [Solanum tuberosum]	IPR002182 (NB-ARC), IPR021929 (Late blight resistance protein R1)	GO:0043531 (ADP binding)
Niben101Scf11576g00005.1	sp|Q5ZIN1|NUDC_CHICK	*-*-	Nuclear migration protein nudC		
Niben101Scf36703g00001.1	sp|O80341|EF102_ARATH	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02798g00003.1			Unknown protein		
Niben101Scf02816g02007.1	AT4G26180.1	****	Mitochondrial substrate carrier family protein LENGTH=325	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005743 (mitochondrial inner membrane), GO:0055085 (transmembrane transport)
Niben101Scf01823g01004.1	sp|Q7XA65|PUS1_ARATH	--*-	RNA pseudouridine synthase 1		
Niben101Scf07688g01011.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00438g02017.1	sp|A8EV72|ATPA_ARCB4	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01685g08005.1	emb|CAE04764.3|	--*-	OSJNBa0079C19.5 [Oryza sativa Japonica Group]		
Niben101Scf00739g00002.1			Unknown protein		
Niben101Scf00926g03005.1	AT4G02900.1	***-	ERD (early-responsive to dehydration stress) family protein LENGTH=785	IPR003864 (Domain of unknown function DUF221)	GO:0016020 (membrane)
Niben101Scf03114g07013.1	AT4G25660.1	***-	PPPDE putative thiol peptidase family protein LENGTH=255	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf10161g00003.1	ref|NP_001233978.1|	*-*-	extensin-like protein Dif54 precursor [Solanum lycopersicum] emb|CAA67814.1| extensin-like protein Dif54 [Solanum lycopersicum]		
Niben101Scf06200g03003.1	AT2G33847.1	*-*-	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=93		
Niben101Scf16015g03003.1	tpg|DAA61305.1|	*-*-	TPA: hypothetical protein ZEAMMB73_565062 [Zea mays]		
Niben101Scf00348g01008.1	ref|XP_002524379.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF37990.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf10855g01001.1	sp|Q94EJ2|HDA8_ARATH	*-*-	Histone deacetylase 8	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	
Niben101Scf05372g02002.1	sp|Q9XF61|PDI_DATGL	****	Protein disulfide-isomerase	IPR005792 (Protein disulphide isomerase), IPR012336 (Thioredoxin-like fold)	GO:0005783 (endoplasmic reticulum), GO:0016853 (isomerase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf16613g03001.1	sp|Q84K00|NAC78_ARATH	--*-	NAC domain-containing protein 78	IPR003441 (NAC domain), IPR022003 (RST domain of plant C-terminal)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00279g09002.1	sp|Q5R977|F126B_PONAB	*-*-	Protein FAM126B	IPR018619 (Hyccin)	
Niben101Scf00375g01008.1	sp|Q9LZS7|GDL71_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf01281g10027.1	sp|P49211|RL321_ARATH	***-	60S ribosomal protein L32-1	IPR001515 (Ribosomal protein L32e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02597g08002.1	sp|Q0WPW4|ACCO5_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase 5	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01269g13052.1			Unknown protein		
Niben101Scf04967g00009.1	sp|P13027|ARRS_MAIZE	--*-	Anthocyanin regulatory R-S protein	IPR002912 (ACT domain), IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0046983 (protein dimerization activity)
Niben101Scf03732g05002.1			Unknown protein		
Niben101Scf08045g02010.1	sp|Q8LA53|MBD2_ARATH	****	Methyl-CpG-binding domain-containing protein 2	IPR011124 (Zinc finger, CW-type), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf07790g02009.1	AT4G21770.1	****	Pseudouridine synthase family protein LENGTH=472	IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf03645g02002.1	sp|Q93Z16|RPN2_ARATH	***-	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	IPR008814 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1), IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0006487 (protein N-linked glycosylation), GO:0008250 (oligosaccharyltransferase complex), GO:0016021 (integral component of membrane)
Niben101Scf01453g04008.1	sp|F4J2Z7|SDR4_ARATH	****	Short-chain dehydrogenase reductase 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf12470g02003.1	sp|Q8LPR5|TCP4_ARATH	*-*-	Transcription factor TCP4	IPR005333 (Transcription factor, TCP)	
Niben101Scf10213g00016.1	sp|Q10G81|MSI1_ORYSJ	****	Histone-binding protein MSI1 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04252g01008.1	sp|P33077|IAA4_ARATH	***-	Auxin-responsive protein IAA4	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf30743g00004.1	gb|KEH42602.1|	****	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf03597g01013.1	AT3G21610.1	***-	Acid phosphatase/vanadium-dependent haloperoxidase-related protein LENGTH=174	IPR003832 (Acid phosphatase/vanadium-dependent haloperoxidase-related)	
Niben101Scf06123g02008.1	sp|C0HBT3|RN146_SALSA	--*-	E3 ubiquitin-protein ligase rnf146	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02004g00014.1	gb|AIU50013.1|	***-	tunicamycin induced 1, partial [Medicago truncatula]		
Niben101Scf07623g01036.1	sp|O24145|4CL1_TOBAC	***-	4-coumarate--CoA ligase 1	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf02072g00020.1	sp|B5XZ41|FIEF_KLEP3	****	Cation-efflux pump FieF	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain), IPR027470 (Cation efflux protein cytoplasmic domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf10055g06010.1	sp|Q9FLG1|BXL4_ARATH	*-*-	Beta-D-xylosidase 4	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01372g06002.1	sp|Q9FWA6|PP207_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05610g03027.1	AT5G66740.1	***-	Protein of unknown function (DUF620) LENGTH=370	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf11791g00010.1	sp|Q6IE26|EPHX4_MOUSE	***-	Epoxide hydrolase 4	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf01413g00006.1	sp|Q9LNT9|ASK4_ARATH	***-	SKP1-like protein 4	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf02497g01020.1	sp|A6QP05|DHR12_BOVIN	****	Dehydrogenase/reductase SDR family member 12	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf07121g02017.1	AT3G54360.1	****	zinc ion binding LENGTH=405	IPR011990 (Tetratricopeptide-like helical domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04286g01001.1	sp|Q558Z3|SSU72_DICDI	****	RNA polymerase II subunit A C-terminal domain phosphatase SSU72	IPR006811 (RNA polymerase II subunit A)	GO:0004721 (phosphoprotein phosphatase activity), GO:0005634 (nucleus), GO:0006397 (mRNA processing)
Niben101Scf00398g00003.1			Unknown protein		
Niben101Scf38834g00002.1	emb|CDY16266.1|	***-	BnaC01g23010D [Brassica napus]	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf06437g03003.1			Unknown protein		
Niben101Scf06750g00017.1	sp|P40973|PLY_LILLO	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf10441g01002.1	AT4G19420.1	***-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf14098g00003.1	dbj|BAF63330.1|	*-*-	phytosulfokine receptor kinase [Oryza sativa Japonica Group]	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Scf04994g00004.1	sp|Q9SW80|BLH2_ARATH	*-*-	BEL1-like homeodomain protein 2	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf01374g02020.1	AT1G15230.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=155		
Niben101Scf05549g02009.1	ref|WP_009275792.1|	--*-	MULTISPECIES: multidrug ABC transporter substrate-binding protein [Parabacteroides] gb|EKN30480.1| hypothetical protein HMPREF0999_01920 [Parabacteroides sp. D25]		
Niben101Scf04371g02007.1	sp|Q43216|H2B5_WHEAT	*-*-	Histone H2B.5	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf00064g01004.1	sp|A4FVI0|ZSWM7_DANRE	--*-	Zinc finger SWIM domain-containing protein 7		
Niben101Scf03772g00001.1	sp|Q40477|ERF4_TOBAC	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05349g01036.1	ref|XP_007023667.1|	***-	Gb:AAF36750.1, putative isoform 1 [Theobroma cacao] gb|EOY26289.1| Gb:AAF36750.1, putative isoform 1 [Theobroma cacao]	IPR008195 (Ribosomal protein L34Ae), IPR012870 (Protein of unknown function DUF1666)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00854g11063.1	ref|XP_002536345.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26037.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00063g00002.1	tpg|DAA41320.1|	--*-	TPA: hypothetical protein ZEAMMB73_745179 [Zea mays]		
Niben101Scf06279g01009.1	sp|Q8RY18|Y5436_ARATH	*-*-	MATH domain-containing protein	IPR008974 (TRAF-like)	GO:0005515 (protein binding)
Niben101Scf05142g00003.1			Unknown protein		
Niben101Scf02638g04001.1	sp|P48599|IF4E1_ORYSJ	****	Eukaryotic translation initiation factor 4E-1	IPR001040 (Translation Initiation factor eIF- 4e), IPR023398 (Translation Initiation factor eIF- 4e-like  domain)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0006413 (translational initiation)
Niben101Scf18879g04004.1	sp|B6EUA9|PR40A_ARATH	*-*-	Pre-mRNA-processing protein 40A	IPR001202 (WW domain), IPR002713 (FF domain), IPR027237 (Pre-mRNA-processing protein PRP40)	GO:0005515 (protein binding)
Niben101Scf03885g10002.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01834g01011.1	sp|B0B7R0|DNAJ_CHLT2	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf01227g03003.1			Unknown protein		
Niben101Scf05551g00008.1	emb|CDX87272.1|	***-	BnaC09g05870D [Brassica napus]		
Niben101Scf05387g09012.1	sp|P57453|DEAD_BUCAI	--**	ATP-dependent RNA helicase DeaD	IPR011545 (DEAD/DEAH box helicase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf03651g02008.1	AT3G57280.1	*-*-	Transmembrane proteins 14C LENGTH=226	IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane)
Niben101Scf02555g00003.1	ref|XP_007044452.1|	***-	ARM repeat superfamily protein, putative isoform 4 [Theobroma cacao] gb|EOY00284.1| ARM repeat superfamily protein, putative isoform 4 [Theobroma cacao]	IPR016024 (Armadillo-type fold), IPR026003 (HEAT repeat associated with sister chromatid cohesion protein)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02939g01005.1	sp|Q96GQ5|RUS1_HUMAN	--*-	RUS1 family protein C16orf58		
Niben101Scf05190g01001.1	AT4G28500.1	***-	NAC domain containing protein 73 LENGTH=305	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09696g01125.1			Unknown protein		
Niben101Scf04699g00015.1	sp|A6S936|CLP1_BOTFB	****	mRNA cleavage and polyadenylation factor clp1	IPR010655 (Pre-mRNA cleavage complex II Clp1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028606 (Polyribonucleotide 5-hydroxyl-kinase Clp1)	GO:0005849 (mRNA cleavage factor complex), GO:0031124 (mRNA 3'-end processing)
Niben101Scf02828g02016.1			Unknown protein		
Niben101Scf00113g03009.1	sp|Q09020|PR4_PHAVU	--*-	Wound-induced basic protein	IPR012643 (Wound-inducible basic)	
Niben101Scf04171g02015.1	gb|KEH21397.1|	*-*-	vacuolar fusion CCZ1-like protein [Medicago truncatula]	IPR013176 (Protein of unknown function DUF1712, fungi)	
Niben101Scf34287g00002.1	sp|Q0IQU1|LAC22_ORYSJ	***-	Laccase-22	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00292g02001.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01858g01003.1			Unknown protein		
Niben101Scf01824g00024.1	sp|Q13686|ALKB1_HUMAN	--*-	Alkylated DNA repair protein alkB homolog 1	IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	
Niben101Scf16915g00006.1	sp|A9ILA7|UBIE_BART1	*-**	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf02730g01031.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf02253g05014.1	sp|P40972|PLY_TOBAC	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf06512g02004.1	gb|AGH62538.1|	***-	pollen-specific small CDPK-interacting protein 1 [Petunia integrifolia subsp. inflata]		
Niben101Scf05932g05009.1	sp|Q6I544|GL52_ORYSJ	***-	Germin-like protein 5-1	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf06709g04006.1	sp|Q9LIA1|TPS25_ARATH	*-**	Terpenoid synthase 25	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf01836g00002.1	sp|P24806|XTH24_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 24	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf01155g04011.1	gb|EMT22106.1|	*-*-	Valyl-tRNA synthetase [Aegilops tauschii]		
Niben101Scf02010g04025.1			Unknown protein		
Niben101Scf06603g02002.1	sp|Q9CAL2|CRK3_ARATH	*-**	Cysteine-rich receptor-like protein kinase 3	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03479g05042.1	AT4G13050.1	***-	Acyl-ACP thioesterase LENGTH=367	IPR002864 (Acyl-ACP thioesterase), IPR029069 (HotDog domain)	GO:0006633 (fatty acid biosynthetic process), GO:0016790 (thiolester hydrolase activity)
Niben101Scf04753g03002.1	AT1G02816.1	***-	Protein of unknown function, DUF538 LENGTH=166	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf00212g03019.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03004g01025.1	AT2G17410.1	*-**	ARID/BRIGHT DNA-binding domain-containing protein LENGTH=786	IPR001606 (ARID DNA-binding domain), IPR008978 (HSP20-like chaperone)	GO:0003677 (DNA binding)
Niben101Scf02160g06002.1	sp|A0A352|PSBE_COFAR	***-	Cytochrome b559 subunit alpha	IPR006217 (Photosystem II cytochrome b559, alpha subunit)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf00488g06006.1	AT3G47850.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; Has 57 Blast hits to 57 proteins in 32 species: Archae - 0; Bacteria - 5; Metazoa - 12; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). LENGTH=352		
Niben101Ctg10954g00002.1	AT4G12780.1	*-*-	Chaperone DnaJ-domain superfamily protein LENGTH=904	IPR001623 (DnaJ domain)	
Niben101Scf10776g00013.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004842 (ubiquitin-protein transferase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016567 (protein ubiquitination), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf32539g00003.1	AT3G22250.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=461	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf23219g00003.1	sp|Q8LAD7|IDA_ARATH	*-*-	Protein IDA		
Niben101Scf02046g00002.1	AT1G20640.1	***-	Plant regulator RWP-RK family protein LENGTH=844	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain)	GO:0005515 (protein binding)
Niben101Scf15824g00011.1	AT5G42570.1	***-	B-cell receptor-associated 31-like LENGTH=218		
Niben101Scf10575g00019.1	AT4G34860.1	*-*-	Plant neutral invertase family protein LENGTH=571	IPR024746 (Glycosyl hydrolase family 100)	GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf00980g05007.1	ref|NP_001062575.1|	***-	product [Oryza sativa Japonica Group]	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01385g08003.1	sp|P42731|PABP2_ARATH	*-**	Polyadenylate-binding protein 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf24482g00010.1	AT5G35220.1	***-	Peptidase M50 family protein LENGTH=548		
Niben101Scf00542g02008.1	sp|Q9LE73|NUDT4_ARATH	****	Nudix hydrolase 4	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf13527g00014.1	sp|Q38899|ORC2_ARATH	****	Origin recognition complex subunit 2	IPR007220 (Origin recognition complex, subunit 2)	GO:0000808 (origin recognition complex), GO:0005634 (nucleus), GO:0006260 (DNA replication)
Niben101Scf18623g00001.1	gb|KEH24722.1|	****	katanin p80 WD40 repeat subunit B1-like protein [Medicago truncatula]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR026962 (Katanin p80 subunit B1)	GO:0005515 (protein binding), GO:0008017 (microtubule binding), GO:0008352 (katanin complex), GO:0051013 (microtubule severing)
Niben101Scf06486g06005.1	gb|KEH39364.1|	***-	Ripening related protein family [Medicago truncatula]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf00713g04014.1	sp|Q9M353|CHX20_ARATH	****	Cation/H(+) antiporter 20	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00408g09002.1	ref|XP_002526802.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35537.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08230g00020.1	sp|Q2J3I9|RPPH_RHOP2	***-	RNA pyrophosphohydrolase	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf22015g02043.1	sp|Q14449|GRB14_HUMAN	--*-	Growth factor receptor-bound protein 14		
Niben101Scf02072g00021.1	sp|Q8LDQ4|TAP46_ARATH	***-	PP2A regulatory subunit TAP46	IPR007304 (TAP42-like protein)	GO:0009966 (regulation of signal transduction)
Niben101Scf00253g01002.1	AT2G37420.1	*-**	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf06044g00004.1	ref|NP_001042478.1|	***-	product [Oryza sativa Japonica Group]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf00272g11023.1	AT2G02880.1	***-	mucin-related LENGTH=314		
Niben101Scf07196g00003.1	ref|WP_000573881.1|	--*-	MULTISPECIES: ribonuclease H [Bacillus cereus group] gb|EJQ22452.1| hypothetical protein IE5_01455 [Bacillus cereus BAG3X2-2] gb|ETE87509.1| ribonuclease H [Bacillus thuringiensis serovar aizawai str. Leapi01] gb|ETE99226.1| ribonuclease H [Bacillus thuringiensis serovar aizawai str. Hu4-2] gb|EXY08325.1| ribonuclease H [Bacillus thuringiensis]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf04457g00001.1	gb|AES92421.2|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf01752g06014.1	sp|Q55B11|VTA1_DICDI	*-*-	Vacuolar protein sorting-associated protein VTA1 homolog	IPR023175 (Vacuolar protein sorting-associate protein Vta1/Callose synthase, N-terminal domain)	
Niben101Scf01150g01002.1	sp|Q8GW61|STP14_ARATH	--**	Sugar transport protein 14	IPR004314 (Domain of unknown function DUF239), IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00863g17026.1	sp|Q9SS47|PUM4_ARATH	*-*-	Pumilio homolog 4	IPR012940 (Nucleic acid binding NABP), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf38315g00002.1	sp|B9MQ24|LIPA_CALBD	--*-	Lipoyl synthase		
Niben101Scf01892g01010.1	AT1G48570.1	*-*-	zinc finger (Ran-binding) family protein LENGTH=455		
Niben101Scf12483g00001.1	ref|XP_003605540.1|	*-**	Ran-binding protein [Medicago truncatula] gb|AES87737.1| SPla/RYanodine receptor (SPRY) domain protein [Medicago truncatula]	IPR001870 (B30.2/SPRY domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR027713 (Protein Ssh4 like)	GO:0005515 (protein binding)
Niben101Scf00390g03010.1	sp|Q9M9W1|RL222_ARATH	***-	60S ribosomal protein L22-2	IPR002671 (Ribosomal protein L22e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00193g00022.1	sp|Q2IMF3|PROB_ANADE	--*-	Glutamate 5-kinase	IPR001048 (Aspartate/glutamate/uridylate kinase)	
Niben101Scf05051g03001.1	AT1G07990.1	***-	SIT4 phosphatase-associated family protein LENGTH=802	IPR007587 (SIT4 phosphatase-associated protein family), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00130g03003.1	sp|Q0DJR9|CCA14_ORYSJ	***-	Cyclin-A1-4	IPR013763 (Cyclin-like), IPR029507 (Cyclin A, plant)	GO:0005634 (nucleus)
Niben101Scf03321g01012.1	sp|P54873|HMCS_ARATH	****	Hydroxymethylglutaryl-CoA synthase	IPR010122 (Hydroxymethylglutaryl-CoA synthase, eukaryotic)	GO:0003824 (catalytic activity), GO:0004421 (hydroxymethylglutaryl-CoA synthase activity), GO:0008152 (metabolic process), GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf07231g10008.1	sp|Q9CA54|PP122_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf01477g02007.1	emb|CDY71620.1|	***-	BnaC05g50380D [Brassica napus]		
Niben101Scf02946g00010.1	sp|Q6ID77|MED11_ARATH	****	Mediator of RNA polymerase II transcription subunit 11	IPR019404 (Mediator complex, subunit Med11)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf11884g00023.1	sp|Q8VYP6|NOL9_ARATH	***-	Polynucleotide 5'-hydroxyl-kinase NOL9	IPR010655 (Pre-mRNA cleavage complex II Clp1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01218g01012.1	emb|CDX75234.1|	*-*-	BnaA01g04680D [Brassica napus]		
Niben101Scf06211g01011.1	sp|A4QK54|RK14_ARAHI	*-*-	50S ribosomal protein L14, chloroplastic	IPR000114 (Ribosomal protein L16), IPR000218 (Ribosomal protein L14b/L23e), IPR016180 (Ribosomal protein L10e/L16), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf06809g00030.1	sp|Q328L4|GHRB_SHIDS	****	Glyoxylate/hydroxypyruvate reductase B	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00054g01010.1	sp|Q9LHA4|VA0D2_ARATH	*-**	V-type proton ATPase subunit d2	IPR002843 (ATPase, V0 complex,  c/d subunit)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf06369g05021.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR006564 (Zinc finger, PMZ-type)	GO:0008270 (zinc ion binding)
Niben101Scf08679g04027.1	sp|O07333|CRTY_ARTPT	***-	Phytoene synthase	IPR002060 (Squalene/phytoene synthase)	GO:0009058 (biosynthetic process), GO:0016740 (transferase activity), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf04191g02002.1	AT4G08850.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf00072g09003.1	AT5G53750.1	***-	CBS domain-containing protein LENGTH=408	IPR000644 (CBS domain)	
Niben101Scf03756g02017.1	sp|A9H259|CYSG_GLUDA	--*-	Siroheme synthase		
Niben101Scf04252g01009.1	sp|Q8YHC2|SSB_BRUME	*-**	Single-stranded DNA-binding protein	IPR000424 (Primosome PriB/single-strand DNA-binding)	GO:0003697 (single-stranded DNA binding), GO:0006260 (DNA replication)
Niben101Scf02854g03004.1	sp|Q7KQL3|ARF1_PLAF7	***-	ADP-ribosylation factor 1	IPR003579 (Small GTPase superfamily, Rab type), IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR020849 (Small GTPase superfamily, Ras type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02078g05005.1	AT1G17620.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=264	IPR004864 (Late embryogenesis abundant protein, LEA-14), IPR013783 (Immunoglobulin-like fold)	
Niben101Scf06910g05004.1	sp|Q31KX4|PROA_SYNE7	****	Gamma-glutamyl phosphate reductase	IPR001057 (Glutamate/acetylglutamate kinase), IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0003824 (catalytic activity), GO:0004349 (glutamate 5-kinase activity), GO:0004350 (glutamate-5-semialdehyde dehydrogenase activity), GO:0005737 (cytoplasm), GO:0006561 (proline biosynthetic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf05830g01016.1	ref|XP_002533928.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF28457.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09133g03018.1	AT2G41970.1	*-**	Protein kinase superfamily protein LENGTH=365	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01283g00006.1	sp|Q08CG8|RNF44_DANRE	--*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00557g02016.1	sp|Q5T011|SZT2_HUMAN	--*-	Protein SZT2		
Niben101Scf00262g02008.1	sp|Q9LQR0|LBD1_ARATH	*-*-	LOB domain-containing protein 1	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Ctg16413g00002.1	AT3G18180.1	***-	Glycosyltransferase family 61 protein LENGTH=470	IPR007657 (Glycosyltransferase AER61, uncharacterised)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf08653g05004.1	sp|B0F9L7|GOGC2_ARATH	*-*-	Golgin candidate 2		
Niben101Scf05216g08001.1	sp|A7FZA5|SYK_CLOB1	*-**	Lysine--tRNA ligase	IPR012340 (Nucleic acid-binding, OB-fold), IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004824 (lysine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006430 (lysyl-tRNA aminoacylation)
Niben101Scf01005g03004.1	sp|Q7L0R7|RNF44_HUMAN	--*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf01818g03014.1	emb|CDY61379.1|	*-*-	BnaC05g49890D [Brassica napus]		
Niben101Scf00974g01016.1	AT2G29050.1	***-	RHOMBOID-like 1 LENGTH=389	IPR002610 (Peptidase S54, rhomboid)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf04869g05008.1			Unknown protein		
Niben101Scf02976g01017.1	AT5G45120.1	***-	Eukaryotic aspartyl protease family protein LENGTH=491	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04763g02017.1			Unknown protein		
Niben101Scf13103g01056.1	AT1G75390.1	*-*-	basic leucine-zipper 44 LENGTH=173		
Niben101Scf11886g03034.1	sp|Q8CCP0|NEMF_MOUSE	*-*-	Nuclear export mediator factor Nemf	IPR001878 (Zinc finger, CCHC-type), IPR008532 (Domain of unknown function DUF814), IPR021846 (Protein of unknown function DUF3441)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf00048g00004.1	sp|Q94F58|NAC89_ARATH	*-*-	NAC domain-containing protein 89	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03905g02017.1	sp|Q01413|E13B_SOLLC	***-	Glucan endo-1,3-beta-glucosidase B	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02264g06026.1	sp|O43114|ORC5_SCHPO	*-**	Origin recognition complex subunit 5	IPR020796 (Origin recognition complex, subunit 5)	GO:0000808 (origin recognition complex), GO:0005634 (nucleus), GO:0006260 (DNA replication)
Niben101Scf01897g01001.1	sp|Q9LZX1|LOR15_ARATH	***-	Protein LURP-one-related 15	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf12470g01001.1	ref|NP_001148234.1|	****	carboxylic ester hydrolase/ hydrolase, acting on ester bonds [Zea mays] gb|ACG30251.1| carboxylic ester hydrolase/ hydrolase, acting on ester bonds [Zea mays]	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf03710g11004.1	sp|Q8T135|KIF5_DICDI	*-**	Kinesin-related protein 5	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf03284g07023.1	sp|Q949Z1|PGLR4_ARATH	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06465g04004.1	AT5G57860.1	***-	Ubiquitin-like superfamily protein LENGTH=95	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf06023g02016.1	sp|Q06138|CAB39_MOUSE	--**	Calcium-binding protein 39	IPR013878 (Mo25-like)	GO:0005488 (binding)
Niben101Scf00239g05007.1	sp|O04375|2A5A_ARATH	****	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf00428g15008.1	AT4G16970.1	*-**	Protein kinase superfamily protein LENGTH=889	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07554g00003.1	sp|Q72MG4|IPYR_LEPIC	****	Inorganic pyrophosphatase	IPR008162 (Inorganic pyrophosphatase)	GO:0000287 (magnesium ion binding), GO:0004427 (inorganic diphosphatase activity), GO:0005737 (cytoplasm), GO:0006796 (phosphate-containing compound metabolic process)
Niben101Scf10688g03006.1	ref|XP_007013476.1|	*-*-	Dedicator of cytokinesis protein 6, putative isoform 1 [Theobroma cacao] gb|EOY31095.1| Dedicator of cytokinesis protein 6, putative isoform 1 [Theobroma cacao]		
Niben101Scf11899g00015.1	sp|P92934|AAP6_ARATH	***-	Amino acid permease 6	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf00453g03009.1	AT3G10140.1	***-	RECA homolog 3 LENGTH=389	IPR013765 (DNA recombination and repair protein RecA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003697 (single-stranded DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0006281 (DNA repair), GO:0008094 (DNA-dependent ATPase activity), GO:0009432 (SOS response)
Niben101Scf04436g02011.1	gb|ABL97972.1|	--*-	serine-rich protein [Brassica rapa] emb|CDY19808.1| BnaA09g04610D [Brassica napus]		
Niben101Scf00747g03001.1	sp|Q8GYL9|BRXL2_ARATH	***-	Protein Brevis radix-like 2	IPR013591 (Brevis radix (BRX) domain), IPR027988 (Transcription factor  BREVIS RADIX, N-terminal domain)	
Niben101Scf04434g00004.1	sp|A4QLB4|RBL_LEPVR	*-*-	Ribulose bisphosphate carboxylase large chain	IPR000685 (Ribulose bisphosphate carboxylase, large subunit, C-terminal)	GO:0000287 (magnesium ion binding)
Niben101Scf00168g08010.1			Unknown protein		
Niben101Scf03376g05001.1	sp|P30183|CCB11_ARATH	****	Cyclin-B1-1	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf00428g16011.1	sp|Q9LJI5|VA0D1_ARATH	****	V-type proton ATPase subunit d1	IPR002843 (ATPase, V0 complex,  c/d subunit)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf06344g01020.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00130g07002.1	ref|XP_007013761.1|	***-	TIFY domain protein 8 isoform 3 [Theobroma cacao] gb|EOY31380.1| TIFY domain protein 8 isoform 3 [Theobroma cacao]	IPR010399 (Tify)	
Niben101Scf03486g03004.1	sp|Q9FQ09|KU80_ARATH	****	ATP-dependent DNA helicase 2 subunit KU80	IPR002035 (von Willebrand factor, type A), IPR005161 (Ku70/Ku80, N-terminal alpha/beta), IPR014893 (Ku, C-terminal), IPR016194 (SPOC like C-terminal domain), IPR024193 (Ku80)	GO:0000723 (telomere maintenance), GO:0003677 (DNA binding), GO:0003684 (damaged DNA binding), GO:0004003 (ATP-dependent DNA helicase activity), GO:0005634 (nucleus), GO:0006303 (double-strand break repair via nonhomologous end joining), GO:0006310 (DNA recombination), GO:0016817 (hydrolase activity, acting on acid anhydrides), GO:0042162 (telomeric DNA binding), GO:0043564 (Ku70:Ku80 complex)
Niben101Scf02160g00024.1	ref|YP_173358.1|	*-*-	orf297a [Nicotiana tabacum] dbj|BAD83421.1| orf297a (mitochondrion) [Nicotiana tabacum]		
Niben101Scf03820g02006.1	sp|P50699|TLPH_ARATH	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf04963g04006.1	sp|Q9ZU11|ATB15_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-15	IPR013978 (MEKHLA)	
Niben101Scf00817g03001.1	sp|Q84JH9|TBL25_ARATH	***-	Protein trichome birefringence-like 25	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf05437g03027.1	sp|Q55FS2|STK4L_DICDI	*-**	Serine/threonine-protein kinase 4 homolog B	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf14688g00005.1	sp|Q9SKK0|EBF1_ARATH	****	EIN3-binding F-box protein 1	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf00274g03002.1	ref|XP_002518199.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF44332.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01731g09008.1	sp|Q05085|PTR7_ARATH	***-	Protein NRT1/ PTR FAMILY 6.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf10331g00002.1	sp|Q0WPZ6|PP158_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR003034 (SAP domain)	
Niben101Scf07607g02002.1	sp|Q8K9X7|NUOL_BUCAP	*-*-	NADH-quinone oxidoreductase subunit L	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf04801g01030.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf08240g00004.1	AT2G23930.1	***-	probable small nuclear ribonucleoprotein G LENGTH=80	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf07761g00005.1	sp|P93822|ERF97_ARATH	*-**	Ethylene-responsive transcription factor 14	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00108g03025.1	AT4G29510.1	****	arginine methyltransferase 11 LENGTH=390	IPR010456 (Ribosomal L11 methyltransferase, PrmA), IPR025799 (Protein arginine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005737 (cytoplasm), GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity), GO:0008276 (protein methyltransferase activity)
Niben101Scf06825g00012.1	sp|Q9H211|CDT1_HUMAN	--*-	DNA replication factor Cdt1	IPR014939 (CDT1 Geminin-binding domain-like)	
Niben101Scf03985g03009.1	AT1G14570.2	*-*-	UBX domain-containing protein LENGTH=468	IPR006577 (UAS), IPR012336 (Thioredoxin-like fold), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf07652g01011.1	AT1G16690.1	***-	Enhancer of polycomb-like transcription factor protein LENGTH=439	IPR024943 (Enhancer of polycomb protein)	GO:0032777 (Piccolo NuA4 histone acetyltransferase complex), GO:0035267 (NuA4 histone acetyltransferase complex)
Niben101Scf00305g05034.1	ref|WP_019477901.1|	***-	alpha/beta hydrolase [Prochlorococcus sp. W8]	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf08680g01009.1	sp|Q98G96|CLPB_RHILO	***-	Chaperone protein ClpB	IPR001270 (ClpA/B family), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028299 (ClpA/B, conserved site 2)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0009408 (response to heat), GO:0016485 (protein processing), GO:0019538 (protein metabolic process)
Niben101Scf03944g04007.1	ref|XP_003626920.1|	--**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf06734g00007.1	AT1G60140.1	****	trehalose phosphate synthase LENGTH=861	IPR001830 (Glycosyl transferase, family 20), IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf04629g00007.1	sp|Q40585|VATL_TOBAC	****	V-type proton ATPase 16 kDa proteolipid subunit	IPR000245 (V-ATPase proteolipid subunit), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf17839g00001.1	sp|Q39172|P1_ARATH	*-*-	NADP-dependent alkenal double bond reductase P1	IPR011032 (GroES (chaperonin 10)-like)	
Niben101Scf00926g01004.1	emb|CDX81297.1|	***-	BnaC09g07080D [Brassica napus]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf02665g10011.1	sp|Q52KI8|SRRM1_MOUSE	*-*-	Serine/arginine repetitive matrix protein 1	IPR002483 (PWI domain)	GO:0006397 (mRNA processing)
Niben101Scf06528g03004.1	ref|XP_003620005.1|	-**-	GRF zinc finger containing protein [Medicago truncatula]		
Niben101Scf08479g01001.1	sp|B9SCX0|CASP3_RICCO	***-	Casparian strip membrane protein 3	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf08564g04005.1	sp|Q9LDY9|IOJAC_ARATH	***-	Protein Iojap, chloroplastic	IPR004394 (Protein Iojap/ribosomal silencing factor RsfS), IPR025656 (Oligomerisation domain)	
Niben101Scf01237g00006.1	sp|P09443|LE19_GOSHI	***-	Late embryogenesis abundant protein D-19	IPR000389 (Stress induced protein)	
Niben101Scf03534g01005.1	sp|Q56YU0|AL2C4_ARATH	*-**	Aldehyde dehydrogenase family 2 member C4	IPR015657 (Aminobutyraldehyde dehydrogenase), IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf08391g01010.1	gb|AAO21303.1|	***-	MADS box protein [Nicotiana tabacum]		
Niben101Scf00730g00021.1	AT3G53320.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=553		
Niben101Scf08562g00015.1	sp|Q9XEX2|PRX2B_ARATH	***-	Peroxiredoxin-2B	IPR012336 (Thioredoxin-like fold)	GO:0016491 (oxidoreductase activity)
Niben101Scf05060g09008.1	gb|ADV29952.1|	***-	MYB transcription factor MIXTA-like 8 protein, partial [Erythranthe guttata]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05017g04013.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf04785g00012.1	sp|Q56XP4|NHX2_ARATH	*-**	Sodium/hydrogen exchanger 2	IPR006153 (Cation/H+ exchanger), IPR018422 (Cation/H+ exchanger, CPA1 family)	GO:0005774 (vacuolar membrane), GO:0005886 (plasma membrane), GO:0006812 (cation transport), GO:0006814 (sodium ion transport), GO:0009651 (response to salt stress), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055075 (potassium ion homeostasis), GO:0055085 (transmembrane transport)
Niben101Scf08533g03003.1	AT3G52260.3	*-**	Pseudouridine synthase family protein LENGTH=416	IPR020103 (Pseudouridine synthase, catalytic domain), IPR028766 (RNA pseudouridine synthase 5)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf01859g09005.1	AT2G24650.1	*-**	DNA binding;DNA binding;sequence-specific DNA binding transcription factors LENGTH=1045	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf10881g00045.1	sp|P15688.2|NU2M_BETVU	*-*-	RecName: Full=NADH-ubiquinone oxidoreductase chain 2; AltName: Full=NADH dehydrogenase subunit 2 (mitochondrion) [Beta vulgaris] emb|CAA34728.1| NADH:ubiquinone reductase subunit 2 [Beta vulgaris subsp. vulgaris]		
Niben101Scf02220g06001.1	sp|Q089P5|RS17_SHEFN	-**-	30S ribosomal protein S17	IPR000266 (Ribosomal protein S17), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06349g02002.1	sp|Q9JI10|STK3_MOUSE	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00291g02042.1			Unknown protein		
Niben101Scf05548g02015.1	sp|O34392|YTRE_BACSU	****	ABC transporter ATP-binding protein YtrE	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf00963g02021.1	AT2G26330.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=976	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf06570g05002.1	sp|Q9CQS5|RIOK2_MOUSE	****	Serine/threonine-protein kinase RIO2	IPR011009 (Protein kinase-like domain), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR015285 (RIO2 kinase, winged helix, N-terminal), IPR018934 (RIO-like kinase)	GO:0003824 (catalytic activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06280g02004.1	sp|Q48BQ5|UBIA_PSE14	*-*-	4-hydroxybenzoate octaprenyltransferase	IPR007704 (Mannosyltransferase, DXD), IPR012336 (Thioredoxin-like fold), IPR012932 (Vitamin K epoxide reductase)	GO:0005789 (endoplasmic reticulum membrane), GO:0006506 (GPI anchor biosynthetic process), GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00383g03005.1	gb|AFL90963.1|	*-*-	NBS-LRR-like protein, partial [Panicum virgatum]	IPR002182 (NB-ARC)	GO:0043531 (ADP binding)
Niben101Scf05439g02001.1	ref|WP_007570428.1|	--*-	glutamyl-tRNA synthetase [Patulibacter medicamentivorans] gb|EHN12658.1| Glutamyl-tRNA synthetase [Patulibacter medicamentivorans]		
Niben101Scf07798g00001.1	emb|CDY39086.1|	***-	BnaA01g29700D [Brassica napus]		
Niben101Scf05307g04010.1	AT3G08920.1	***-	Rhodanese/Cell cycle control phosphatase superfamily protein LENGTH=214	IPR001763 (Rhodanese-like domain)	
Niben101Scf07826g04009.1	AT5G46330.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1173	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf03194g01005.1	sp|P46903|NATA_BACSU	*-**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR026082 (ABC transporter A, ABCA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005215 (transporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity)
Niben101Scf15836g00013.1	AT3G45300.1	****	isovaleryl-CoA-dehydrogenase LENGTH=409	IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain), IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal)	GO:0003995 (acyl-CoA dehydrogenase activity), GO:0008152 (metabolic process), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10152g03003.1	AT4G00005.1	*-*-	PRA1 (Prenylated rab acceptor) family protein LENGTH=118	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf01520g08010.1	ref|WP_029077665.1|	****	alkyl hydroperoxide reductase [Bradyrhizobium sp. th.b2]	IPR012336 (Thioredoxin-like fold)	GO:0016491 (oxidoreductase activity)
Niben101Scf11491g01017.1	sp|Q9Y5Q9|TF3C3_HUMAN	*-*-	General transcription factor 3C polypeptide 3	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01176g01025.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08702g00030.1	sp|Q9SL93|ASK3_ARATH	--*-	SKP1-like protein 3	IPR011333 (BTB/POZ fold)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf11770g01001.1	sp|Q8GWP3|COPT6_ARATH	****	Copper transporter 6	IPR007274 (Ctr copper transporter)	GO:0005375 (copper ion transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0035434 (copper ion transmembrane transport)
Niben101Scf00245g00006.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00465g00003.1	sp|Q93ZF5|PHO11_ARATH	***-	Phosphate transporter PHO1 homolog 1	IPR004331 (SPX, N-terminal), IPR004342 (EXS, C-terminal)	GO:0016021 (integral component of membrane)
Niben101Scf10065g00005.1	sp|A6QLC7|TPC11_BOVIN	***-	Trafficking protein particle complex subunit 11	IPR011990 (Tetratricopeptide-like helical domain), IPR012880 (Domain of unknown function DUF1683, C-terminal), IPR021773 (Foie gras liver health family 1)	GO:0005515 (protein binding)
Niben101Scf01514g04017.1			Unknown protein		
Niben101Scf02525g02002.1	sp|Q9M1V3|PP296_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf00116g06006.1	AT1G32910.1	****	HXXXD-type acyl-transferase family protein LENGTH=464	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03068g00016.1	ref|YP_005090400.1|	*-*-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf00570g02008.1	gb|KGC97307.1|	*-*-	taurine catabolism dioxygenase TauD, TfdA family protein [Burkholderia pseudomallei]		
Niben101Scf02362g03007.1	gb|KEH34361.1|	***-	phytol kinase [Medicago truncatula]	IPR000374 (Phosphatidate cytidylyltransferase)	GO:0016020 (membrane), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08834g00001.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf09221g00010.1	AT1G48910.1	****	Flavin-containing monooxygenase family protein LENGTH=383	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08459g01007.1	sp|Q6DAY3|LLDD_PECAS	***-	L-lactate dehydrogenase	IPR012133 (Alpha-hydroxy acid dehydrogenase, FMN-dependent), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01994g02009.1	sp|A7I4X6|RS12_METB6	****	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf03657g08001.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf07720g00027.1	sp|Q9LNT9|ASK4_ARATH	--*-	SKP1-like protein 4	IPR011333 (BTB/POZ fold), IPR012643 (Wound-inducible basic)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf00279g01007.1	ref|NP_001047213.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf01100g06014.1	ref|XP_007049403.1|	***-	Cell wall protein AWA1 isoform 1 [Theobroma cacao] gb|EOX93560.1| Cell wall protein AWA1 isoform 1 [Theobroma cacao]	IPR009060 (UBA-like), IPR009719 (Protein of unknown function DUF1296, plant)	GO:0005515 (protein binding)
Niben101Scf03169g01002.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01545g02007.1	AT5G10930.1	****	CBL-interacting protein kinase 5 LENGTH=445	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06579g01015.1	sp|Q9TSZ3|KCNH2_CANFA	*-**	Potassium voltage-gated channel subfamily H member 2	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR020683 (Ankyrin repeat-containing domain)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0005515 (protein binding), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00046g07025.1	sp|Q8N5M1|ATPF2_HUMAN	****	ATP synthase mitochondrial F1 complex assembly factor 2	IPR011419 (ATP12, ATPase F1F0-assembly protein), IPR023335 (Orthogonal Bundle domain in ATP12)	GO:0043461 (proton-transporting ATP synthase complex assembly)
Niben101Scf02378g02004.1	sp|Q39255|SKP1A_ARATH	***-	SKP1-like protein 1A	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf03720g01009.1	AT3G06630.1	****	protein kinase family protein LENGTH=671	IPR000014 (PAS domain), IPR000700 (PAS-associated, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004871 (signal transducer activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03915g04013.1	AT5G53590.1	***-	SAUR-like auxin-responsive protein family LENGTH=142	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00472g02004.1			Unknown protein		
Niben101Scf00573g01005.1	sp|O80872|TBL45_ARATH	***-	Protein trichome birefringence-like 45	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf04741g00003.1	gb|AAW28576.2|	--*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf01063g00017.1	sp|Q9BVM4|GGACT_HUMAN	*-*-	Gamma-glutamylaminecyclotransferase	IPR013024 (Butirosin biosynthesis, BtrG-like)	
Niben101Scf08664g00002.1			Unknown protein		
Niben101Scf03374g06006.1			Unknown protein		
Niben101Scf01677g01001.1	AT3G02700.1	***-	NC domain-containing protein-related LENGTH=252	IPR007053 (LRAT-like domain)	
Niben101Scf10298g03002.1	emb|CDY00790.1|	*-*-	BnaC03g37740D [Brassica napus]		
Niben101Scf19171g01032.1	gb|AAU90304.1|	***-	MuDR family transposase containing protein [Solanum demissum]	IPR004332 (Transposase, MuDR, plant), IPR018289 (MULE transposase domain)	
Niben101Scf00688g00002.1	sp|Q5PT54|NTCP5_MOUSE	*-*-	Sodium/bile acid cotransporter 5	IPR002657 (Bile acid:sodium symporter/arsenical resistance protein  Acr3)	GO:0016020 (membrane)
Niben101Scf01426g02003.1	sp|Q33443|RBL_EREMA	*-*-	Ribulose bisphosphate carboxylase large chain	IPR000685 (Ribulose bisphosphate carboxylase, large subunit, C-terminal)	GO:0000287 (magnesium ion binding)
Niben101Scf04018g05004.1	dbj|BAD99417.1|	****	acyl-transferase [Capsicum annuum]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03099g00003.1	sp|C4XGC2|NQOR_DESMR	***-	NAD(P)H dehydrogenase (quinone)	IPR010089 (Flavoprotein WrbA), IPR029039 (Flavoprotein-like)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0045892 (negative regulation of transcription, DNA-templated)
Niben101Scf07226g03010.1	sp|Q09466|WHT3_CAEEL	****	ABC transporter ATP-binding protein/permease wht-3	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00307g01015.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02816g05004.1	sp|Q9M2Y8|1A19_ARATH	***-	1-aminocyclopropane-1-carboxylate synthase 9	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01489g01003.1	sp|Q5QM99|RL37A_ORYSJ	***-	60S ribosomal protein L37a	IPR002674 (Ribosomal protein L37ae), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06570g03025.1			Unknown protein		
Niben101Scf02240g06010.1			Unknown protein		
Niben101Scf00851g06016.1	sp|Q9T0D6|PP306_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03338g00002.1	sp|B4EWN4|MDTK_PROMH	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01583g00002.1	AT4G18030.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=621	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf08433g00014.1	sp|Q9FZ95|PUP3_ARATH	***-	Purine permease 3	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf14036g00004.1	sp|Q80XJ3|TTC28_MOUSE	*-*-	Tetratricopeptide repeat protein 28	IPR006636 (Heat shock chaperonin-binding), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04184g02008.1	dbj|BAE98814.1|	***-	translation elongation factor EF-1 alpha [Arabidopsis thaliana]		
Niben101Scf04010g01007.1	AT1G55580.1	***-	GRAS family transcription factor LENGTH=445	IPR005202 (Transcription factor GRAS), IPR030017 (Scarecrow-like protein 18/MONOCULM 1)	GO:0005634 (nucleus), GO:0010223 (secondary shoot formation)
Niben101Scf02854g09025.1	sp|Q6NQ72|THO4D_ARATH	*-*-	THO complex subunit 4D	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf07244g03022.1	sp|Q5N8Z0|DRB1_ORYSJ	--*-	Double-stranded RNA-binding protein 1		
Niben101Scf03326g02008.1	sp|Q8VH51|RBM39_MOUSE	--**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06823g02004.1	AT2G14880.1	***-	SWIB/MDM2 domain superfamily protein LENGTH=141	IPR003121 (SWIB/MDM2 domain)	GO:0005515 (protein binding)
Niben101Scf01768g04017.1	AT1G20330.1	****	sterol methyltransferase 2 LENGTH=361	IPR013705 (Sterol methyltransferase C-terminal), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006694 (steroid biosynthetic process), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf00870g13014.1	AT1G54120.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=124		
Niben101Scf05202g00018.1	sp|P19515|LIP_RHIMI	***-	Lipase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf12394g02003.1	sp|Q9FLJ2|NC100_ARATH	*-*-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01274g08008.1	gb|KEH22859.1|	***-	DUF247 domain protein [Medicago truncatula]	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf00858g06014.1	sp|Q0DA21|BGL25_ORYSJ	*-*-	Beta-glucosidase 25	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf39514g00007.1	ref|WP_025940863.1|	--*-	MULTISPECIES: hypothetical protein [Prochlorococcus]	IPR022051 (Protein of unknown function DUF3611)	
Niben101Ctg16098g00002.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf04231g00001.1	AT3G49590.3	***-	Autophagy-related protein 13 LENGTH=618	IPR018731 (Autophagy-related protein 13)	
Niben101Scf02215g01019.1	sp|P04717|RBL_PEA	--**	Ribulose bisphosphate carboxylase large chain	IPR017443 (Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf01221g12011.1			Unknown protein		
Niben101Scf03103g00015.1	AT5G19760.1	***-	Mitochondrial substrate carrier family protein LENGTH=298	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf03648g04010.1	gb|KEH25572.1|	*-*-	HSP20-like chaperone superfamily protein [Medicago truncatula]	IPR008978 (HSP20-like chaperone)	
Niben101Scf01322g04021.1			Unknown protein		
Niben101Scf01005g02010.1	ref|XP_002514414.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF48010.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04505g07006.1	AT5G06839.3	*-**	bZIP transcription factor family protein LENGTH=460	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03129g06002.1	sp|P61285|DYL1_BOVIN	***-	Dynein light chain 1, cytoplasmic	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Scf04184g00002.1	sp|Q9FT52|ATP5H_ARATH	****	ATP synthase subunit d, mitochondrial	IPR008689 (ATPase, F0 complex, subunit D, mitochondrial)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf07323g00006.1	sp|Q7M1E7|PGLR2_CHAOB	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01823g01005.1	AT1G56345.1	*-**	Pseudouridine synthase family protein LENGTH=322	IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf14269g00008.1	AT4G12770.1	*-*-	Chaperone DnaJ-domain superfamily protein LENGTH=891	IPR001623 (DnaJ domain)	
Niben101Scf02466g01020.1	sp|Q9S7G7|MB3R1_ARATH	*-*-	Myb-related protein 3R-1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02511g03014.1	AT5G53220.1	*-*-	unknown protein; Has 3099 Blast hits to 2528 proteins in 332 species: Archae - 2; Bacteria - 245; Metazoa - 1059; Fungi - 555; Plants - 177; Viruses - 49; Other Eukaryotes - 1012 (source: NCBI BLink). LENGTH=368		
Niben101Scf03280g01016.1	sp|Q8T135|KIF5_DICDI	*-**	Kinesin-related protein 5	IPR000299 (FERM domain), IPR000857 (MyTH4 domain), IPR001752 (Kinesin motor domain), IPR011254 (Prismane-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0005856 (cytoskeleton), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01628g00022.1			Unknown protein		
Niben101Scf10314g04007.1	sp|Q8VH51|RBM39_MOUSE	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf11178g02002.1	sp|B5LMP5|RK33_CICAR	***-	50S ribosomal protein L33, chloroplastic	IPR001705 (Ribosomal protein L33), IPR002615 (Photosystem I PsaJ, reaction centre subunit IX), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0009522 (photosystem I), GO:0015979 (photosynthesis)
Niben101Scf03291g02012.1	AT4G16210.1	***-	enoyl-CoA hydratase/isomerase A LENGTH=265	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf05711g04004.1	emb|CDX79898.1|	*-*-	BnaA05g02580D [Brassica napus]		
Niben101Scf01063g09016.1	ref|NP_001054271.1|	--*-	product [Oryza sativa Japonica Group]	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf02854g02010.1	gb|ABD33309.1|	*-**	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf00351g05003.1	sp|Q5KR49|TPM1_BOVIN	--*-	Tropomyosin alpha-1 chain		
Niben101Scf04184g02004.1	sp|A2VDX7|EXO5_BOVIN	***-	Exonuclease V	IPR019190 (Exonuclease V)	GO:0045145 (single-stranded DNA 5'-3' exodeoxyribonuclease activity)
Niben101Scf04316g10010.1	AT3G09430.1	*-*-	unknown protein; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=301		
Niben101Scf08966g00008.1	ref|XP_002522409.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF39901.1| conserved hypothetical protein [Ricinus communis]	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf06461g09016.1	sp|O81211|RBOHE_ARATH	****	Respiratory burst oxidase homolog protein E	IPR000778 (Cytochrome b245, heavy chain), IPR011992 (EF-hand domain pair), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0004601 (peroxidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0050664 (oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf10476g00004.1	sp|Q2UB20|ALG8_ASPOR	***-	Dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase	IPR004856 (Glycosyl transferase, ALG6/ALG8)	GO:0005789 (endoplasmic reticulum membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf17422g00001.1			Unknown protein		
Niben101Scf01276g05011.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf12841g00003.1	AT1G53380.1	***-	Plant protein of unknown function (DUF641) LENGTH=453	IPR006943 (Domain of unknown function DUF641, plant)	
Niben101Scf05890g02018.1	ref|XP_002523706.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38646.1| conserved hypothetical protein [Ricinus communis]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf06583g04009.1	gb|KEH34030.1|	*-*-	F-box protein interaction domain protein [Medicago truncatula]		
Niben101Scf13002g01015.1	sp|Q5RBI5|SF3B3_PONAB	*-*-	Splicing factor 3B subunit 3	IPR004871 (Cleavage/polyadenylation specificity factor, A subunit, C-terminal)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Scf02008g00006.1	emb|CDY40217.1|	***-	BnaA09g34990D [Brassica napus]		
Niben101Scf06583g00001.1	sp|Q9LNF6|FB48_ARATH	*-*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf03185g00007.1	ref|WP_033123537.1|	--*-	TonB-dependent receptor [Helicobacter pylori]		
Niben101Scf19446g01001.1	sp|Q7VBM1|PROA_PROMA	****	Gamma-glutamyl phosphate reductase	IPR001057 (Glutamate/acetylglutamate kinase), IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0003824 (catalytic activity), GO:0004349 (glutamate 5-kinase activity), GO:0004350 (glutamate-5-semialdehyde dehydrogenase activity), GO:0006561 (proline biosynthetic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf01076g05025.1	sp|Q9FJY7|PP449_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02215g01016.1	sp|O04251|Y4211_ARATH	*-*-	BRCT domain-containing protein	IPR001357 (BRCT domain)	
Niben101Scf04040g01013.1	emb|CDY23298.1|	*-*-	BnaA08g12480D [Brassica napus]		
Niben101Scf00279g06016.1	AT3G08890.1	***-	Protein of unknown function, DUF538 LENGTH=170	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf07790g02008.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf01494g15009.1	AT1G24130.1	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=415	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf03227g05014.1	gb|ABD28627.2|	*-**	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf00984g08005.1	sp|Q95245|CY561_PIG	*-*-	Cytochrome b561	IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf19171g01036.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf01022g03008.1			Unknown protein		
Niben101Scf00739g02011.1			Unknown protein		
Niben101Scf00383g03002.1	ref|XP_007046846.1|	*-*-	P-loop containing nucle , putative isoform 1 [Theobroma cacao]	IPR025753 (AAA-type ATPase, N-terminal domain)	
Niben101Scf01497g01004.1	sp|P0C9V7|CD2H_ASFK5	--*-	CD2 homolog		
Niben101Scf08724g06011.1	AT1G58100.1	*-*-	TCP family transcription factor LENGTH=401	IPR005333 (Transcription factor, TCP)	
Niben101Scf02858g01010.1	sp|Q96E22|NGBR_HUMAN	***-	Dehydrodolichyl diphosphate syntase complex subunit NUS1	IPR001441 (Decaprenyl diphosphate synthase-like)	GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf06876g01031.1	ref|XP_002512246.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF49698.1| conserved hypothetical protein [Ricinus communis]	IPR010903 (Protein of unknown function DUF1517)	
Niben101Scf03392g01001.1	ref|XP_007033686.1|	*-*-	Nonsense-mediated mRNA decay protein 2 isoform 2 [Theobroma cacao] gb|EOY04612.1| Nonsense-mediated mRNA decay protein 2 isoform 2 [Theobroma cacao]		
Niben101Scf14273g00013.1	sp|P15349|RPOA1_HALMO	*-**	DNA-directed RNA polymerase subunit A'	IPR006592 (RNA polymerase, N-terminal), IPR007066 (RNA polymerase Rpb1, domain 3), IPR007080 (RNA polymerase Rpb1, domain 1), IPR007081 (RNA polymerase Rpb1, domain 5), IPR007083 (RNA polymerase Rpb1, domain 4)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf05713g04009.1	AT5G58950.1	****	Protein kinase superfamily protein LENGTH=525	IPR011009 (Protein kinase-like domain), IPR015783 (Serine/threonine-protein kinase HT1, plant)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06310g00004.1	AT3G10560.1	*-*-	Cytochrome P450 superfamily protein LENGTH=514	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08716g01028.1	sp|Q8RWQ4|RGAP7_ARATH	***-	Rho GTPase-activating protein 7	IPR008936 (Rho GTPase activation protein), IPR011993 (Pleckstrin homology-like domain), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf05373g01006.1	AT3G55410.1	****	2-oxoglutarate dehydrogenase, E1 component LENGTH=1017	IPR011603 (2-oxoglutarate dehydrogenase E1 component), IPR029061 (Thiamin diphosphate-binding fold)	GO:0004591 (oxoglutarate dehydrogenase (succinyl-transferring) activity), GO:0006099 (tricarboxylic acid cycle), GO:0008152 (metabolic process), GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor), GO:0030976 (thiamine pyrophosphate binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10144g01024.1	AT1G55040.1	****	zinc finger (Ran-binding) family protein LENGTH=849	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf01959g05012.1	sp|Q8RXD6|BRE1A_ARATH	--*-	E3 ubiquitin-protein ligase BRE1-like 1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00238g03001.1			Unknown protein		
Niben101Scf10298g03005.1			Unknown protein		
Niben101Scf09885g00012.1	ref|NP_001052354.1|	***-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf07320g00021.1	sp|Q9C912|R35A3_ARATH	***-	60S ribosomal protein L35a-3	IPR001780 (Ribosomal protein L35A), IPR009000 (Translation protein, beta-barrel domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01494g06001.1	gb|AFJ52950.1|	*-*-	UDP-glycosyltransferase 1 [Linum usitatissimum]		
Niben101Scf00869g06025.1	ref|NP_001051644.1|	*-*-	product [Oryza sativa Japonica Group]	IPR006946 (Protein of unknown function DUF642), IPR008979 (Galactose-binding domain-like)	
Niben101Scf01813g00006.1	AT5G60900.1	*-**	receptor-like protein kinase 1 LENGTH=748	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00022g09004.1	sp|Q5HL56|COPA_STAEQ	*-*-	Copper-exporting P-type ATPase A	IPR008250 (P-type ATPase, A  domain)	GO:0000166 (nucleotide binding), GO:0046872 (metal ion binding)
Niben101Scf03114g07010.1	sp|Q68XC2|MURC_RICTY	****	UDP-N-acetylmuramate--L-alanine ligase	IPR005758 (UDP-N-acetylmuramate-alanine ligase), IPR016040 (NAD(P)-binding domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008360 (regulation of cell shape), GO:0008763 (UDP-N-acetylmuramate-L-alanine ligase activity), GO:0009058 (biosynthetic process), GO:0016874 (ligase activity), GO:0051301 (cell division)
Niben101Scf05895g02015.1	AT1G11390.1	***-	Protein kinase superfamily protein LENGTH=624	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04318g01014.1	AT2G19090.1	*-*-	Protein of unknown function (DUF630 and DUF632) LENGTH=814	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf14083g01009.1	ref|XP_003625935.1|	*-**	ATP-dependent DNA helicase PIF1 [Medicago truncatula] gb|KEH16156.1| PIF1-like helicase [Medicago truncatula]	IPR010285 (DNA helicase Pif1 like), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf05596g00009.1	sp|Q222U2|PUR7_RHOFT	****	Phosphoribosylaminoimidazole-succinocarboxamide synthase	IPR013816 (ATP-grasp fold, subdomain 2), IPR028923 (SAICAR synthetase/ADE2, N-terminal)	GO:0004639 (phosphoribosylaminoimidazolesuccinocarboxamide synthase activity), GO:0005524 (ATP binding), GO:0006164 (purine nucleotide biosynthetic process)
Niben101Scf00573g05001.1	sp|P40977|PLC1_SCHPO	****	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase 1	IPR001192 (Phosphoinositide phospholipase C family), IPR011992 (EF-hand domain pair)	GO:0004435 (phosphatidylinositol phospholipase C activity), GO:0005515 (protein binding), GO:0006629 (lipid metabolic process), GO:0007165 (signal transduction), GO:0008081 (phosphoric diester hydrolase activity), GO:0035556 (intracellular signal transduction)
Niben101Scf00305g05031.1	sp|Q72MG4|IPYR_LEPIC	****	Inorganic pyrophosphatase	IPR008162 (Inorganic pyrophosphatase)	GO:0000287 (magnesium ion binding), GO:0004427 (inorganic diphosphatase activity), GO:0005737 (cytoplasm), GO:0006796 (phosphate-containing compound metabolic process)
Niben101Scf08127g08010.1	ref|XP_002530805.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF31573.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04122g05011.1	sp|Q9P0L0|VAPA_HUMAN	--**	Vesicle-associated membrane protein-associated protein A	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf12165g00003.1	sp|Q06881|BCCP_NOSS1	*-**	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	IPR000089 (Biotin/lipoyl attachment), IPR001249 (Acetyl-CoA biotin carboxyl carrier)	GO:0003989 (acetyl-CoA carboxylase activity), GO:0006633 (fatty acid biosynthetic process), GO:0009317 (acetyl-CoA carboxylase complex)
Niben101Scf07974g00011.1	AT1G60460.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 23 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=493		
Niben101Scf00470g01005.1	gb|ABF97230.1|	-**-	transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa Japonica Group]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf11937g02017.1	sp|P52012|PPIL2_CAEEL	*-**	Peptidyl-prolyl cis-trans isomerase 4	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0005515 (protein binding), GO:0006457 (protein folding)
Niben101Scf24963g00018.1	sp|Q9SH26|PP102_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07672g00016.1	AT5G52370.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=142		
Niben101Scf03867g01015.1	sp|Q71N54|LCAT4_ARATH	--*-	Lecithin-cholesterol acyltransferase-like 4		
Niben101Scf05387g09015.1	sp|A5DL80|DBP2_PICGU	*-**	ATP-dependent RNA helicase DBP2	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01934g04020.1	sp|Q8LGG8|USPAL_ARATH	*-**	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf02494g08002.1	sp|P62302|RS13_SOYBN	***-	40S ribosomal protein S13	IPR000589 (Ribosomal protein S15), IPR012606 (Ribosomal protein S13/S15, N-terminal)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02438g00006.1	AT5G13710.1	*-**	sterol methyltransferase 1 LENGTH=336	IPR013705 (Sterol methyltransferase C-terminal), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006694 (steroid biosynthetic process), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf02555g00004.1	sp|B1JAD6|MUTL_PSEPW	--*-	DNA mismatch repair protein MutL		
Niben101Ctg09408g00001.1	AT5G57500.1	*-**	Galactosyltransferase family protein LENGTH=318	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf01678g03003.1	AT4G23490.1	*-*-	Protein of unknown function (DUF604) LENGTH=526	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf07323g01001.1	sp|Q9C5Z2|EIF3H_ARATH	****	Eukaryotic translation initiation factor 3 subunit H	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR027524 (Eukaryotic translation initiation factor 3 subunit H)	GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf05855g01009.1	sp|Q20390|PPT1_CAEEL	****	Palmitoyl-protein thioesterase 1	IPR002472 (Palmitoyl protein thioesterase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0002084 (protein depalmitoylation), GO:0008474 (palmitoyl-(protein) hydrolase activity), GO:0098599 (palmitoyl hydrolase activity)
Niben101Scf02380g00008.1			Unknown protein		
Niben101Scf02929g01018.1			Unknown protein		
Niben101Scf07729g01004.1	sp|Q8JIY8|MK67I_DANRE	--*-	MKI67 FHA domain-interacting nucleolar phosphoprotein		
Niben101Scf01938g05001.1	sp|P52551|MYBB_XENLA	*-*-	Myb-related protein B	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05799g02008.1	sp|A4G9C5|LIPB_HERAR	*-*-	Octanoyltransferase		
Niben101Scf02063g06007.1	sp|P92997|GL113_ARATH	***-	Germin-like protein subfamily 1 member 13	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf09368g06007.1	gb|ABS79378.1|	***-	At4g40080-like protein [Arabidopsis lyrata subsp. petraea]	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding)
Niben101Scf10314g03014.1	emb|CDX91110.1|	*-*-	BnaC02g04870D [Brassica napus]		
Niben101Scf02404g02007.1	sp|Q9SUY0|FB244_ARATH	--*-	F-box protein	IPR017451 (F-box associated interaction domain)	
Niben101Scf02828g00010.1	ref|XP_002528223.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF34156.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01232g01005.1	sp|Q9FLV9|SLAH3_ARATH	****	S-type anion channel SLAH3	IPR004695 (Voltage-dependent anion channel)	GO:0006873 (cellular ion homeostasis), GO:0008308 (voltage-gated anion channel activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf04664g04021.1	ref|XP_002512968.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF49471.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05118g11012.1	AT1G63830.2	***-	PLAC8 family protein LENGTH=232	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf05458g00004.1	sp|Q5R3Z8|FBXL2_PONAB	*-*-	F-box/LRR-repeat protein 2	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf04462g01008.1	sp|Q7NZ60|MDH_CHRVO	****	Malate dehydrogenase	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf05697g07002.1	AT1G23480.1	***-	cellulose synthase-like A3 LENGTH=556	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf10678g00011.1	sp|Q7WKM7|METE_BORBR	*-**	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	IPR002629 (Cobalamin-independent methionine synthase MetE, C-terminal/archaeal)	GO:0003871 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity), GO:0008270 (zinc ion binding), GO:0009086 (methionine biosynthetic process)
Niben101Scf21589g00002.1	sp|O00566|MPP10_HUMAN	*-*-	U3 small nucleolar ribonucleoprotein protein MPP10	IPR007151 (Mpp10 protein)	
Niben101Scf05372g02003.1	ref|XP_003590506.1|	*-*-	Zinc finger protein [Medicago truncatula]		
Niben101Scf08308g04009.1	gb|KEH43633.1|	*-*-	late embryogenesis abundant protein, putative [Medicago truncatula]		
Niben101Scf02890g00009.1	AT1G13530.1	*-*-	Protein of unknown function (DUF1262) LENGTH=385	IPR010683 (Protein of unknown function DUF1262)	
Niben101Scf09672g01004.1	sp|P40818|UBP8_HUMAN	*-**	Ubiquitin carboxyl-terminal hydrolase 8	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf09452g01015.1	sp|Q7VBM1|PROA_PROMA	****	Gamma-glutamyl phosphate reductase	IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0004350 (glutamate-5-semialdehyde dehydrogenase activity), GO:0006561 (proline biosynthetic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf10712g00030.1	AT3G04470.1	***-	Ankyrin repeat family protein LENGTH=640	IPR020683 (Ankyrin repeat-containing domain), IPR021832 (Ankyrin repeat domain-containing protein 13)	GO:0005515 (protein binding)
Niben101Scf03757g00004.1	ref|XP_002524097.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38307.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf10384g02008.1	sp|O82797|PCNA_TOBAC	***-	Proliferating cell nuclear antigen	IPR000730 (Proliferating cell nuclear antigen, PCNA)	GO:0003677 (DNA binding), GO:0006275 (regulation of DNA replication), GO:0030337 (DNA polymerase processivity factor activity)
Niben101Scf06686g01021.1	AT1G75510.1	****	Transcription initiation factor IIF, beta subunit LENGTH=261	IPR003196 (Transcription initiation factor IIF, beta subunit)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0005674 (transcription factor TFIIF complex), GO:0006367 (transcription initiation from RNA polymerase II promoter)
Niben101Scf01181g03001.1	sp|P27806|H1_WHEAT	*-*-	Histone H1	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR020478 (AT hook-like)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf10441g01003.1	ref|WP_009786102.1|	****	polyamine ABC transporter substrate-binding protein [Lyngbya sp. PCC 8106] gb|EAW35355.1| periplasmic polyamine-binding protein of ABC transporter [Lyngbya sp. PCC 8106]	IPR001188 (Bacterial periplasmic spermidine/putrescine-binding protein)	GO:0015846 (polyamine transport), GO:0019808 (polyamine binding), GO:0042597 (periplasmic space)
Niben101Scf01237g07020.1	AT2G40390.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=496		
Niben101Scf06113g00013.1	gb|KEH31185.1|	***-	transmembrane protein, putative [Medicago truncatula]	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf01641g01015.1	sp|B2UMY1|FTSH_AKKM8	*-**	ATP-dependent zinc metalloprotease FtsH	IPR000642 (Peptidase M41), IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis)
Niben101Scf04100g00015.1	AT5G63890.2	****	histidinol dehydrogenase LENGTH=466	IPR012131 (Histidinol dehydrogenase), IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0000105 (histidine biosynthetic process), GO:0004399 (histidinol dehydrogenase activity), GO:0008152 (metabolic process), GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07790g00003.1	AT4G04900.1	*-*-	ROP-interactive CRIB motif-containing protein 10 LENGTH=156	IPR000095 (CRIB domain)	
Niben101Scf05044g03007.1	emb|CDX87902.1|	--*-	BnaC06g09640D [Brassica napus]		
Niben101Scf04763g02013.1	AT3G21560.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05062g01006.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02606g05054.1	AT3G04350.1	*-*-	Plant protein of unknown function (DUF946) LENGTH=567	IPR009291 (Vacuolar protein sorting-associated protein 62)	
Niben101Scf04253g01005.1	ref|XP_007011137.1|	--*-	F-box and associated interaction domains-containing protein [Theobroma cacao] gb|EOY19947.1| F-box and associated interaction domains-containing protein [Theobroma cacao]		
Niben101Scf08531g03022.1	AT1G35340.1	****	ATP-dependent protease La (LON) domain protein LENGTH=316	IPR003111 (Peptidase S16, lon N-terminal), IPR015947 (PUA-like domain)	GO:0004176 (ATP-dependent peptidase activity), GO:0006508 (proteolysis)
Niben101Scf06123g01025.1	sp|Q8LEJ6|FLA11_ARATH	***-	Fasciclin-like arabinogalactan protein 11	IPR000782 (FAS1 domain)	
Niben101Scf10103g03014.1	sp|O00506|STK25_HUMAN	****	Serine/threonine-protein kinase 25	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf20512g01011.1	AT3G17220.1	****	pectin methylesterase inhibitor 2 LENGTH=173	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf03349g00002.1			Unknown protein		
Niben101Scf01824g00026.1	sp|Q9LTJ1|MBD6_ARATH	*-**	Methyl-CpG-binding domain-containing protein 6	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf00466g04035.1	gb|KFB86097.1|	***-	dihydrolipoamide dehydrogenase [Calothrix sp. 336/3]	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR016156 (FAD/NAD-linked reductase, dimerisation domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0016668 (oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02107g04011.1	sp|Q885L1|PHS_PSESM	*-**	Pterin-4-alpha-carbinolamine dehydratase	IPR001533 (Transcriptional coactivator/pterin dehydratase)	GO:0006729 (tetrahydrobiopterin biosynthetic process), GO:0008124 (4-alpha-hydroxytetrahydrobiopterin dehydratase activity)
Niben101Scf00272g11024.1	AT1G69780.1	***-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00949g03003.1	AT5G22640.1	*-*-	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein LENGTH=871	IPR003409 (MORN motif)	
Niben101Scf05146g00011.1	AT1G48430.1	****	Dihydroxyacetone kinase LENGTH=593	IPR012734 (Dihydroxyacetone kinase)	GO:0004371 (glycerone kinase activity), GO:0005524 (ATP binding), GO:0006071 (glycerol metabolic process)
Niben101Scf02214g00010.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf10389g00006.1	emb|CDX74248.1|	***-	BnaA03g27990D [Brassica napus]		
Niben101Scf04407g01018.1			Unknown protein		
Niben101Scf01752g06015.1	ref|XP_003599472.1|	*-*-	Defensin-like protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283), IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf03124g01005.1	AT2G23530.1	*-*-	Zinc-finger domain of monoamine-oxidase A repressor R1 LENGTH=552	IPR018866 (Zinc-finger domain of monoamine-oxidase A repressor R1)	
Niben101Scf01063g06001.1	emb|CDY19913.1|	***-	BnaC09g31790D [Brassica napus]	IPR002150 (Ribosomal protein L31)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02474g03004.1	sp|O06967|BMRA_BACSU	*-**	Multidrug resistance ABC transporter ATP-binding/permease protein BmrA	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf03284g01001.1	sp|B5XTQ8|GLGX_KLEP3	***-	Glycogen debranching enzyme	IPR013780 (Glycosyl hydrolase, family 13, all-beta), IPR015902 (Glycoside hydrolase, family 13), IPR017853 (Glycoside hydrolase superfamily)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0043169 (cation binding)
Niben101Scf02816g02006.1	sp|Q66HC4|PHOP2_RAT	****	Pyridoxal phosphate phosphatase PHOSPHO2	IPR006383 (HAD-superfamily hydrolase, subfamily IB, PSPase-like), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016791 (phosphatase activity)
Niben101Scf00398g00002.1	sp|Q7W515|HEMH_BORPA	--*-	Ferrochelatase		
Niben101Scf00438g02016.1	sp|A5V3X3|ATPA_SPHWW	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf03565g01003.1	AT4G25610.1	***-	C2H2-like zinc finger protein LENGTH=586	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf02646g03004.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00739g00003.1			Unknown protein		
Niben101Scf00448g13001.1	sp|Q5E930|SLAH1_ARATH	****	S-type anion channel SLAH1	IPR004695 (Voltage-dependent anion channel)	GO:0006873 (cellular ion homeostasis), GO:0008308 (voltage-gated anion channel activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf05610g03024.1	AT5G65650.1	***-	Protein of unknown function (DUF1195) LENGTH=185	IPR010608 (Protein of unknown function DUF1195)	
Niben101Scf09696g01038.1	ref|YP_009091709.1|	*-*-	orf109 (mitochondrion) [Panax ginseng] gb|AHJ81034.1| orf109 (mitochondrion) [Panax ginseng]		
Niben101Scf00956g01002.1	sp|Q57242|UUP1_HAEIN	*-**	ABC transporter ATP-binding protein uup-1	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf02929g03074.1	ref|XP_002519967.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF42415.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11886g03031.1	sp|C4ZXE2|GHRB_ECOBW	*-**	Glyoxylate/hydroxypyruvate reductase B	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03209g00027.1	emb|CDX98744.1|	***-	BnaA03g45290D [Brassica napus]		
Niben101Scf02527g00006.1	sp|P23433|E13D_TOBAC	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03030g01007.1			Unknown protein		
Niben101Scf02074g06070.1	sp|Q6A198|FUT10_BOVIN	--*-	Alpha-(1,3)-fucosyltransferase 10		
Niben101Scf00152g22009.1	gb|ABD32938.2|	***-	Pathogen-related protein, related [Medicago truncatula]		
Niben101Scf01927g08004.1	sp|O82199|C3H20_ARATH	***-	Zinc finger CCCH domain-containing protein 20	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf01777g02003.1	gb|ADG85346.1|	*-**	NADH dehydrogenase subunit 6 [Silene vulgaris]	IPR001457 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 6)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07984g04019.1	sp|Q55C58|VPS16_DICDI	*-*-	Vacuolar protein sorting-associated protein 16 homolog	IPR016534 (Vacuolar protein sorting-associated protein 16)	GO:0005737 (cytoplasm), GO:0006886 (intracellular protein transport)
Niben101Scf00956g02008.1	AT1G72010.1	*-*-	TCP family transcription factor LENGTH=375	IPR005333 (Transcription factor, TCP)	
Niben101Scf02621g03016.1	sp|P01122|RHO_APLCA	****	Ras-like GTP-binding protein RHO	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00071g04002.1	sp|Q9LFL5|PP390_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07036g02027.1			Unknown protein		
Niben101Scf12841g02008.1	sp|O65355|GGH2_ARATH	****	Gamma-glutamyl hydrolase 2	IPR011697 (Peptidase C26), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003824 (catalytic activity), GO:0006541 (glutamine metabolic process), GO:0008242 (omega peptidase activity), GO:0016787 (hydrolase activity)
Niben101Scf00926g03006.1	sp|Q07262|1A1C_TOBAC	***-	1-aminocyclopropane-1-carboxylate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf14156g00013.1	sp|B4TBF8|RHMD_SALHS	--*-	L-rhamnonate dehydratase		
Niben101Scf04187g00031.1	sp|Q6AXX6|F213A_RAT	*-*-	Redox-regulatory protein FAM213A		
Niben101Scf02436g00004.1	sp|Q39639|PLSB_CUCSA	****	Glycerol-3-phosphate acyltransferase, chloroplastic	IPR016222 (Glycerol-3-phosphate O-acyltransferase, chloroplast)	GO:0004366 (glycerol-3-phosphate O-acyltransferase activity), GO:0006650 (glycerophospholipid metabolic process), GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf01150g01006.1	sp|P23343|ACT1_DAUCA	*-*-	Actin-1	IPR004000 (Actin family)	
Niben101Scf03138g01041.1	sp|P49215|RS17_SOLLC	***-	40S ribosomal protein S17	IPR001210 (Ribosomal protein S17e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02982g03004.1			Unknown protein		
Niben101Scf03437g02002.1	sp|Q5ZI67|NHLC2_CHICK	*-*-	NHL repeat-containing protein 2	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0005515 (protein binding)
Niben101Scf00585g02014.1	AT4G16444.1	***-	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages;	IPR028945 (WRB/Get1 family)	GO:0071816 (tail-anchored membrane protein insertion into ER membrane)
Niben101Scf06967g03008.1	AT2G27230.1	*-*-	transcription factor-related LENGTH=650	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01696g00010.1	sp|Q9FIX3|PP407_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00276g05008.1	AT2G22560.1	*-*-	Kinase interacting (KIP1-like) family protein LENGTH=947	IPR011684 (KIP1-like)	
Niben101Scf14883g02014.1			Unknown protein	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf05295g04011.1	sp|Q9VUQ8|DCN1L_DROME	***-	DCN1-like protein	IPR014764 (Defective-in-cullin neddylation protein)	
Niben101Scf04312g03016.1	AT5G56850.1	*-*-	unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). LENGTH=551		
Niben101Scf00332g06030.1	AT1G56345.1	****	Pseudouridine synthase family protein LENGTH=322	IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf07437g00002.1	AT1G59650.1	***-	Protein of unknown function (DUF1336) LENGTH=492	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf03486g03003.1	sp|P28342|GSTZ1_DIACA	*-*-	Glutathione S-transferase 1	IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf02312g01002.1			Unknown protein		
Niben101Scf00891g02001.1	ATMG01110.1	*-*-	Mitovirus RNA-dependent RNA polymerase chrM:283034-283789 REVERSE LENGTH=251	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf13569g00001.1	ref|WP_009711804.1|	****	dihydroxynaphthoic acid synthetase [Desmospora sp. 8437] gb|EGK07457.1| naphthoate synthase [Desmospora sp. 8437]	IPR001753 (Crotonase superfamily), IPR014748 (Crontonase, C-terminal), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0008935 (1,4-dihydroxy-2-naphthoyl-CoA synthase activity), GO:0009234 (menaquinone biosynthetic process)
Niben101Scf01519g01007.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021720 (Malectin)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01190g01003.1	ref|XP_002512970.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF49473.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf12841g01002.1	AT1G53400.1	***-	Ubiquitin domain-containing protein LENGTH=114		
Niben101Scf00149g10020.1	AT1G21270.1	*-*-	wall-associated kinase 2 LENGTH=732	IPR000742 (Epidermal growth factor-like domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0030247 (polysaccharide binding)
Niben101Scf04325g01023.1	gb|AAO72598.1|	***-	myosin-like protein [Oryza sativa Japonica Group] gb|AAO72684.1| putative myosin heavy chain [Oryza sativa Japonica Group]		
Niben101Scf00472g01008.1	sp|Q9SB61|ZHD2_ARATH	*-*-	Zinc-finger homeodomain protein 2	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain)	
Niben101Scf01036g03002.1	AT4G27450.1	***-	Aluminium induced protein with YGL and LRDR motifs LENGTH=250	IPR024286 (Domain of unknown function DUF3700), IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf04171g02014.1	sp|P83218|PME_DAUCA	****	Pectinesterase	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01660g02014.1	AT4G14090.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=456	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf10213g00017.1	sp|Q9LIC2|TMN7_ARATH	***-	Transmembrane 9 superfamily member 7	IPR004240 (Nonaspanin (TM9SF)), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane)
Niben101Scf02939g01002.1	ref|XP_002512080.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF50749.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf12866g00023.1	AT3G49670.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1002	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf05959g00009.1			Unknown protein		
Niben101Scf03479g05046.1	gb|KEH18174.1|	*-*-	vacuolar iron transporter-like protein [Medicago truncatula]	IPR008217 (Ccc1 family)	
Niben101Scf09544g01012.1	gb|KEH35387.1|	*-*-	receptor-like kinase [Medicago truncatula]		
Niben101Scf08208g02004.1	gb|KEH37079.1|	*-*-	maternal effect embryo arrest protein [Medicago truncatula]		
Niben101Scf09099g00023.1	sp|Q75AA5|NTF2_ASHGO	--**	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Ctg11124g00003.1	sp|P93039|NAT4_ARATH	*-**	Nucleobase-ascorbate transporter 4	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf05969g00009.1	sp|C5DYK5|RKM5_ZYGRC	--*-	Ribosomal lysine N-methyltransferase 5	IPR019410 (Nicotinamide N-methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf04212g00013.1	sp|Q95JW2|CTL5_MACFA	*-*-	Choline transporter-like protein 5	IPR007603 (Choline transporter-like)	
Niben101Scf15972g02014.1	sp|Q086J2|DNAJ_SHEFN	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR003604 (Zinc finger, U1-type), IPR022755 (Zinc finger, double-stranded RNA binding)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf03036g07021.1	gb|AES63099.2|	*-*-	sn1-specific diacylglycerol lipase beta-like protein [Medicago truncatula]		
Niben101Scf01933g04001.1	AT1G10530.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=166	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf03641g13004.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf05183g06005.1	sp|F4IXW2|BIG5_ARATH	*-*-	Brefeldin A-inhibited guanine nucleotide-exchange protein 5		
Niben101Scf04436g13015.1	AT3G07480.1	***-	2Fe-2S ferredoxin-like superfamily protein LENGTH=159	IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf01385g08004.1	sp|P21187|PABP_DROME	*-**	Polyadenylate-binding protein	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06590g06006.1	AT3G09520.1	****	exocyst subunit exo70 family protein H4 LENGTH=628	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf05836g05004.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08653g05003.1	sp|B0F9L7|GOGC2_ARATH	*-*-	Golgin candidate 2		
Niben101Scf02025g00006.1	gb|AAO45711.1|	***-	TCP protein, partial [Scrophularia californica]	IPR005333 (Transcription factor, TCP)	
Niben101Scf03729g02016.1	ref|XP_569839.1|	*-**	retrograde transporter [Cryptococcus neoformans var. neoformans JEC21] gb|AAW42532.1| retrograde transport, endosome to Golgi-related protein, putative [Cryptococcus neoformans var. neoformans JEC21]	IPR012501 (Vps54-like)	GO:0042147 (retrograde transport, endosome to Golgi)
Niben101Scf02740g12007.1	sp|Q9SYS3|CRK40_ARATH	*-**	Cysteine-rich receptor-like protein kinase 40	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13773g00030.1	gb|AAO00711.1|	--*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf10820g00001.1	AT1G14430.1	*-*-	glyoxal oxidase-related protein LENGTH=564	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR014756 (Immunoglobulin E-set), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf01553g01001.1	sp|Q40412|ABA2_NICPL	****	Zeaxanthin epoxidase, chloroplastic	IPR008984 (SMAD/FHA domain), IPR017079 (Zeaxanthin epoxidase)	GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0009507 (chloroplast), GO:0009540 (zeaxanthin epoxidase [overall] activity), GO:0009688 (abscisic acid biosynthetic process), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00293g04005.1	sp|Q7ZU90|CHD1L_DANRE	*-**	Chromodomain-helicase-DNA-binding protein 1-like	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf16733g01032.1	sp|Q9FZ80|SOT17_ARATH	****	Cytosolic sulfotransferase 17	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf13525g00018.1	sp|P53632|PAP2_YEAST	*-*-	Poly(A) RNA polymerase protein 2		
Niben101Scf01267g01010.1			Unknown protein		
Niben101Scf06105g02003.1	sp|Q3SJQ4|NUOD_THIDA	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00635g09012.1	sp|Q28J34|ERLN2_XENTR	***-	Erlin-2	IPR001107 (Band 7 protein)	
Niben101Scf04436g02010.1	ref|XP_002531322.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF31072.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04560g07010.1	sp|Q42891|LGUL_SOLLC	****	Lactoylglutathione lyase	IPR004361 (Glyoxalase I), IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	GO:0004462 (lactoylglutathione lyase activity), GO:0046872 (metal ion binding)
Niben101Scf02457g01006.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00988g04027.1			Unknown protein		
Niben101Scf00239g05006.1	sp|Q9F234|AGL2_BACTQ	***-	Alpha-glucosidase 2	IPR000322 (Glycoside hydrolase family 31), IPR011013 (Galactose mutarotase-like domain), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf10122g01029.1	sp|Q9SW27|MUB3_ARATH	*-*-	Membrane-anchored ubiquitin-fold protein 3	IPR029071 (Ubiquitin-related domain)	
Niben101Scf16244g01010.1	sp|Q5ZI57|TPPC3_CHICK	***-	Trafficking protein particle complex subunit 3	IPR007194 (Transport protein particle (TRAPP) component), IPR024096 (NO signalling/Golgi transport  ligand-binding domain)	
Niben101Scf22015g02044.1			Unknown protein		
Niben101Scf23152g00010.1	gb|AES62418.2|	***-	membrane-associated kinase regulator-like protein, putative [Medicago truncatula]		
Niben101Scf02681g01014.1	sp|Q67Y93|KRP1_ARATH	*-**	Cyclin-dependent kinase inhibitor 1	IPR003175 (Cyclin-dependent kinase inhibitor)	GO:0004861 (cyclin-dependent protein serine/threonine kinase inhibitor activity), GO:0005634 (nucleus), GO:0007050 (cell cycle arrest)
Niben101Scf03710g11003.1	sp|Q9XI07|SWI3C_ARATH	***-	SWI/SNF complex subunit SWI3C	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf01927g08005.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04010g01004.1	sp|Q8W1P0|CSN6B_ARATH	***-	COP9 signalosome complex subunit 6b	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR024969 (Rpn11/EIF3F C-terminal domain)	GO:0005515 (protein binding)
Niben101Scf00897g03001.1	sp|P46417|GSTX3_SOYBN	***-	Glutathione S-transferase 3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf04667g00001.1			Unknown protein		
Niben101Ctg13850g00002.1	sp|O22213|CKX1_ARATH	*-*-	Cytokinin dehydrogenase 1		
Niben101Scf03194g01006.1	AT5G62540.1	***-	ubiquitin-conjugating enzyme 3 LENGTH=150	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Ctg00074g00004.1			Unknown protein		
Niben101Scf05319g04001.1	sp|Q0CT01|TVP38_ASPTN	--*-	Golgi apparatus membrane protein tvp38		
Niben101Scf00043g00002.1			Unknown protein		
Niben101Scf03621g01018.1	AT2G01680.1	***-	Ankyrin repeat family protein LENGTH=532	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf06454g01001.1	sp|Q8S8A0|GDU4_ARATH	*-*-	Protein GLUTAMINE DUMPER 4		
Niben101Scf01218g01011.1	AT1G56145.2	*-*-	Leucine-rich repeat transmembrane protein kinase LENGTH=1039	IPR001611 (Leucine-rich repeat), IPR021720 (Malectin)	GO:0005515 (protein binding)
Niben101Scf02525g02005.1	AT1G03920.1	****	Protein kinase family protein LENGTH=569	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain), IPR011993 (Pleckstrin homology-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02459g08005.1	sp|Q9T072|BH025_ARATH	*-*-	Transcription factor bHLH25	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02156g02008.1	sp|Q96300|14337_ARATH	***-	14-3-3-like protein GF14 nu	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf27793g02001.1	gb|ACG26001.1|	***-	COV1-like protein [Zea mays]	IPR007462 (Protein of unknown function DUF502)	
Niben101Scf04992g02005.1	AT2G33845.1	***-	Nucleic acid-binding, OB-fold-like protein LENGTH=182	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf08488g02001.1	gb|KEH22910.1|	*-*-	far-red elongated hypocotyl protein, putative [Medicago truncatula]		
Niben101Scf02357g04003.1	ref|XP_002520376.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF41992.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03756g02018.1	sp|P30362|ASPG_LUPAR	***-	Isoaspartyl peptidase/L-asparaginase	IPR000246 (Peptidase T2, asparaginase 2), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0016787 (hydrolase activity)
Niben101Scf04994g00005.1	AT1G47510.1	*-*-	inositol polyphosphate 5-phosphatase 11 LENGTH=334	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf02078g05004.1	sp|A1EA06|RR14_AGRST	***-	30S ribosomal protein S14, chloroplastic	IPR001209 (Ribosomal protein S14)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04231g01028.1	sp|Q2LVL0|MSBA_SYNAS	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf02085g17002.1			Unknown protein		
Niben101Scf06211g01010.1	sp|A8SED9|RR8_CERDE	--*-	30S ribosomal protein S8, chloroplastic		
Niben101Scf08588g00013.1	emb|CDY20565.1|	***-	BnaC07g12320D [Brassica napus]	IPR008581 (Protein of unknown function DUF863, plant)	
Niben101Scf07382g01020.1	sp|Q02096|PGLR_PERAE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02385g01005.1	AT4G17900.1	***-	PLATZ transcription factor family protein LENGTH=227	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf02510g05034.1	sp|A4Y768|OPGH_SHEPC	--*-	Glucans biosynthesis glucosyltransferase H	IPR002150 (Ribosomal protein L31)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf18623g00002.1	sp|Q8H0T9|KTNB1_ARATH	--*-	Katanin p80 WD40 repeat-containing subunit B1 homolog		
Niben101Scf03077g03006.1	ref|XP_007018571.1|	***-	RING/U-box superfamily protein isoform 2 [Theobroma cacao] gb|EOY15796.1| RING/U-box superfamily protein isoform 2 [Theobroma cacao]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf06094g02017.1	AT1G05280.1	*-*-	Protein of unknown function (DUF604) LENGTH=461	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf07729g02006.1	ref|XP_007015994.1|	***-	ARM repeat superfamily protein, putative isoform 1 [Theobroma cacao] gb|EOY33613.1| ARM repeat superfamily protein, putative isoform 1 [Theobroma cacao]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01124g16003.1	sp|Q8LG50|LPAT2_ARATH	****	1-acyl-sn-glycerol-3-phosphate acyltransferase 2	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf13527g00015.1	AT1G66360.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=174	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf02992g03016.1			Unknown protein		
Niben101Scf04763g02014.1	tpg|DAA61305.1|	--*-	TPA: hypothetical protein ZEAMMB73_565062 [Zea mays]		
Niben101Scf04382g01003.1	sp|Q9XE58|SCL14_ARATH	***-	Scarecrow-like protein 14	IPR005202 (Transcription factor GRAS)	
Niben101Scf03202g01001.1	gb|KEH20374.1|	*-*-	rhodanese-related sulfurtransferase [Medicago truncatula]	IPR001763 (Rhodanese-like domain)	
Niben101Scf06288g00008.1	gb|ACI05253.1|	***-	type I MADS box transcription factor [Petunia x hybrida]		
Niben101Scf09045g01008.1	sp|P93028|UBE11_ARATH	****	Ubiquitin-activating enzyme E1 1	IPR000011 (Ubiquitin/SUMO-activating enzyme E1), IPR018965 (Ubiquitin-activating enzyme e1, C-terminal), IPR023280 (Ubiquitin-like 1 activating enzyme, catalytic cysteine domain)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0006464 (cellular protein modification process), GO:0008641 (small protein activating enzyme activity)
Niben101Scf04011g05001.1	gb|KEH15707.1|	*-*-	cytochrome P450 family 71 protein [Medicago truncatula]	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02367g05031.1	ref|NP_001189809.1|	*-*-	DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana] gb|AEE74160.1| DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana]	IPR007592 (Protein of unknown function DUF573)	
Niben101Scf00082g08020.1	sp|B9IZ16|OBG_BACCQ	****	GTPase Obg	IPR014100 (GTP-binding protein Obg/CgtA), IPR015349 (GTP-binding protein OBG, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf00779g00014.1	emb|CDX92841.1|	***-	BnaC07g40990D [Brassica napus]		
Niben101Scf05643g01011.1	ref|XP_003627838.1|	*-*-	DNA-directed RNA polymerase subunit [Medicago truncatula]	IPR015801 (Copper amine oxidase, N2/N3-terminal), IPR021602 (Protein of unknown function DUF3223)	GO:0005507 (copper ion binding), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding)
Niben101Scf09997g00008.1	ref|XP_003594237.1|	--*-	F-box protein [Medicago truncatula]	IPR017451 (F-box associated interaction domain)	
Niben101Scf00557g02015.1	AT2G44350.2	****	Citrate synthase family protein LENGTH=474	IPR002020 (Citrate synthase-like)	GO:0004108 (citrate (Si)-synthase activity), GO:0006099 (tricarboxylic acid cycle), GO:0044262 (cellular carbohydrate metabolic process), GO:0046912 (transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer)
Niben101Scf06069g00004.1	sp|Q9FWZ1|FBL13_ARATH	*-*-	F-box/LRR-repeat protein 13		
Niben101Scf00488g06005.1			Unknown protein		
Niben101Scf01009g00008.1	AT1G07710.1	***-	Ankyrin repeat family protein LENGTH=543	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf06042g03001.1	dbj|BAD99417.1|	*-**	acyl-transferase [Capsicum annuum]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01489g01004.1	sp|O22585|AMYB_MEDSA	****	Beta-amylase	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf08597g00009.1			Unknown protein		
Niben101Scf31747g00003.1	emb|CDY38592.1|	--*-	BnaC06g30150D [Brassica napus]		
Niben101Scf00202g03004.1			Unknown protein		
Niben101Scf03905g02018.1	AT3G36659.1	*-**	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=264	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf04283g07009.1	gb|ADY17841.1|	*-*-	bHLH transcription factor [Oryza rufipogon]	IPR025610 (Transcription factor MYC/MYB N-terminal)	
Niben101Scf03267g00045.1	dbj|BAP82301.1|	--*-	cytochrome c oxidase subunit 2 (mitochondrion) [Brassica oleracea]		
Niben101Scf02502g19012.1	sp|P0AC77|KDTA_ECO57	***-	3-deoxy-D-manno-octulosonic acid transferase	IPR007507 (3-deoxy-D-manno-octulosonic-acid transferase, N-terminal)	
Niben101Scf01073g07010.1			Unknown protein		
Niben101Scf04532g00006.1	sp|P93003|TFL1_ARATH	***-	Protein TERMINAL FLOWER 1	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf31945g00009.1	sp|Q8RWD0|COL16_ARATH	****	Zinc finger protein CONSTANS-LIKE 16	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf00206g01004.1	sp|O96552|CHMP1_DICDI	***-	Charged multivesicular body protein 1	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf07146g00007.1	sp|E6Y2X0|PILR2_LINUS	***-	Bifunctional pinoresinol-lariciresinol reductase 2	IPR016040 (NAD(P)-binding domain)	
Niben101Scf01520g08013.1	sp|O17917|RN113_CAEEL	--*-	RING finger protein 113 homolog	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01141g01001.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01020g00009.1	sp|P27495|CB24_TOBAC	***-	Chlorophyll a-b binding protein 40, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf39208g00007.1	sp|Q27601|PUR1_DROME	****	Amidophosphoribosyltransferase	IPR005854 (Amidophosphoribosyl transferase), IPR029055 (Nucleophile aminohydrolases, N-terminal), IPR029057 (Phosphoribosyltransferase-like)	GO:0004044 (amidophosphoribosyltransferase activity), GO:0008152 (metabolic process), GO:0009113 (purine nucleobase biosynthetic process), GO:0009116 (nucleoside metabolic process)
Niben101Scf39176g00003.1	sp|Q89EG9|AQPZ_BRADU	***-	Aquaporin Z	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02805g03006.1			Unknown protein		
Niben101Scf00501g01014.1	sp|Q9XHP0|11S2_SESIN	***-	11S globulin seed storage protein 2	IPR006044 (11-S seed storage protein, plant)	GO:0045735 (nutrient reservoir activity)
Niben101Scf07244g03021.1	gb|AFW71223.1|	*-*-	meiosis 5 [Zea mays]		
Niben101Scf05824g15002.1	sp|Q9LYP4|BAG3_ARATH	****	BAG family molecular chaperone regulator 3	IPR003103 (BAG domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf03985g03008.1	emb|CDX71720.1|	*-*-	BnaC08g31540D [Brassica napus]	IPR021480 (Protein of unknown function DUF3133)	
Niben101Scf01642g01006.1	sp|Q6IQ97|RBM41_DANRE	*-**	RNA-binding protein 4.1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07391g04027.1	sp|Q6YZ54|RFC3_ORYSJ	****	Replication factor C subunit 3	IPR003959 (ATPase, AAA-type, core), IPR008921 (DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006260 (DNA replication)
Niben101Scf11009g00010.1	sp|Q9LSS5|ICR3_ARATH	***-	Interactor of constitutive active ROPs 3		
Niben101Scf02282g01014.1	AT2G23060.1	***-	Acyl-CoA N-acyltransferases (NAT) superfamily protein LENGTH=413	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf02105g02010.1	sp|P0A007|ATKB1_STAAM	***-	Potassium-transporting ATPase B chain 1	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf03444g03019.1	sp|Q8GYP6|PPR49_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02174g00010.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04339g08020.1	sp|Q9SL04|ATG8D_ARATH	***-	Autophagy-related protein 8d	IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain)	
Niben101Scf02749g05039.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05211g01005.1	sp|Q5HRM8|CLPC_STAEQ	*-*-	ATP-dependent Clp protease ATP-binding subunit ClpC	IPR004176 (Clp, N-terminal), IPR023150 (Double Clp-N motif)	GO:0019538 (protein metabolic process)
Niben101Scf05173g00012.1	sp|Q5REC9|RAB8B_PONAB	***-	Ras-related protein Rab-8B	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf01032g00006.1	sp|Q66L49|SCMC1_DANRE	--**	Calcium-binding mitochondrial carrier protein SCaMC-1	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf16516g00007.1	dbj|BAM28759.1|	*-*-	ROX1 homologue [Nicotiana tabacum]		
Niben101Scf02309g03025.1	sp|P23134|CYB_RHORU	*-*-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal), IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf08664g00001.1	ref|YP_008992313.1|	*-*-	rib S4 (mitochondrion) [Salvia miltiorrhiza]		
Niben101Scf03056g02021.1	sp|C1CVE0|LEUD_DEIDV	*-*-	3-isopropylmalate dehydratase small subunit	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf08175g01014.1	sp|O35789|B3GA1_RAT	****	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1	IPR005027 (Glycosyl transferase, family 43), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0015018 (galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity), GO:0016020 (membrane)
Niben101Scf04504g01010.1	ref|XP_007021290.1|	***-	U3 small nucleolar RNA-associated protein 14 B isoform 4 [Theobroma cacao] gb|EOY12815.1| U3 small nucleolar RNA-associated protein 14 B isoform 4 [Theobroma cacao]		
Niben101Scf02112g02009.1	sp|Q10FZ7|YAB2_ORYSJ	***-	Protein YABBY 2	IPR006780 (YABBY protein)	
Niben101Scf00564g01004.1	sp|C4B8C4|EPFL3_ARATH	***-	EPIDERMAL PATTERNING FACTOR-like protein 3		
Niben101Scf14036g00003.1	sp|Q8VYI9|NLTL5_ARATH	--*-	Non-specific lipid-transfer protein-like protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf01694g12012.1	sp|P50346|RLA0_SOYBN	***-	60S acidic ribosomal protein P0	IPR001790 (Ribosomal protein L10/acidic P0)	GO:0005622 (intracellular), GO:0042254 (ribosome biogenesis)
Niben101Scf00927g10012.1	sp|Q9D1Q4|DPM3_MOUSE	--*-	Dolichol-phosphate mannosyltransferase subunit 3	IPR013174 (Dolichol-phosphate mannosyltransferase subunit 3)	
Niben101Scf01190g00006.1	sp|Q8W4S4|VHAA3_ARATH	****	V-type proton ATPase subunit a3	IPR002490 (V-type  ATPase, V0 complex, 116kDa subunit family)	GO:0000220 (vacuolar proton-transporting V-type ATPase, V0 domain), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf04636g02007.1	sp|C3MB99|TRPB_RHISN	****	Tryptophan synthase beta chain	IPR023026 (Tryptophan synthase beta chain/beta chain-like)	GO:0000162 (tryptophan biosynthetic process), GO:0004834 (tryptophan synthase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf05392g01022.1	sp|Q9XEX2|PRX2B_ARATH	***-	Peroxiredoxin-2B	IPR012336 (Thioredoxin-like fold)	GO:0016491 (oxidoreductase activity)
Niben101Scf09828g00004.1	AT2G25180.1	*-*-	response regulator 12 LENGTH=596	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily), IPR017053 (Response regulator, plant B-type)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf10338g00011.1	sp|Q6GPW4|TM205_XENLA	***-	Transmembrane protein 205	IPR025423 (Domain of unknown function DUF4149)	
Niben101Scf01250g02002.1	sp|P41099|RLA2_PARAR	*-*-	60S acidic ribosomal protein P2	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf00570g02009.1	gb|KGC97307.1|	***-	taurine catabolism dioxygenase TauD, TfdA family protein [Burkholderia pseudomallei]	IPR003819 (Taurine catabolism dioxygenase TauD/TfdA)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf15538g00013.1	sp|Q8GXV5|UGHY_ARATH	*-*-	(S)-ureidoglycine aminohydrolase	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf00870g13013.1	AT1G54120.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=124		
Niben101Scf00180g10018.1	gb|AFW59909.1|	***-	fiber protein Fb34 [Zea mays]	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf02913g00006.1	sp|Q09MH9|PSAB_CITSI	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00679g07008.1	emb|CDY24256.1|	***-	BnaC03g42290D [Brassica napus]		
Niben101Scf14333g00004.1	sp|Q8GW29|LOG7_ARATH	***-	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf02854g06003.1	AT5G16610.2	*-*-	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). LENGTH=673		
Niben101Scf05002g01007.1	sp|Q9CR40|KLH28_MOUSE	*-*-	Kelch-like protein 28	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf02968g02018.1	sp|O23044|PER3_ARATH	****	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03009g00001.1	sp|G2K045|DNAJ_LISM4	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf00371g02003.1			Unknown protein		
Niben101Scf12210g04021.1	sp|F4I4P3|MED23_ARATH	***-	Mediator of RNA polymerase II transcription subunit 23	IPR021629 (Mediator complex, subunit Med23)	
Niben101Scf02688g05004.1	ref|NP_001062726.1|	--*-	[Oryza sativa Japonica Group] dbj|BAF24640.1| [Oryza sativa Japonica Group]		
Niben101Scf00404g03003.1	AT4G25800.1	*-*-	Calmodulin-binding protein LENGTH=601	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf00170g05032.1	sp|Q976A6|RPOA2_SULTO	*-**	DNA-directed RNA polymerase subunit A''	IPR015700 (DNA-directed RNA polymerase III subunit RPC1)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0032549 (ribonucleoside binding)
Niben101Scf01084g01009.1	gb|AAA34117.1|	--*-	mRNA inducible by salicylic acid or by TMV during systemic acquired resistance response' [Nicotiana tabacum] gb|AAB24788.1| systemic acquired resistance gene SAR8.2a product [Nicotiana tabacum=tobacco, Xanthi nc, TMV-inoculated plants, Peptide, 95 aa]	IPR004297 (Systemic acquired resistance protein SAR)	
Niben101Scf00054g01013.1	sp|Q21N29|METE_SACD2	****	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	IPR006276 (Cobalamin-independent methionine synthase)	GO:0003871 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity), GO:0008270 (zinc ion binding), GO:0008652 (cellular amino acid biosynthetic process), GO:0009086 (methionine biosynthetic process)
Niben101Scf03565g07018.1	AT1G80270.1	***-	PENTATRICOPEPTIDE REPEAT 596 LENGTH=596	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07681g01013.1	sp|Q9M0X5|CRK25_ARATH	*-**	Cysteine-rich receptor-like protein kinase 25	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05203g07004.1			Unknown protein		
Niben101Scf07399g00030.1	gb|KEH23114.1|	*-*-	DUF674 family protein [Medicago truncatula]		
Niben101Scf04728g00011.1	sp|P83337|OFUT1_CRIGR	--*-	GDP-fucose protein O-fucosyltransferase 1		
Niben101Scf07272g00005.1	sp|Q2UA71|HAT2_ASPOR	--*-	Histone acetyltransferase type B subunit 2	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf14958g00030.1	AT4G33495.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=409	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Ctg01201g00001.1	sp|Q9M886|LBD41_ARATH	***-	LOB domain-containing protein 41	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf04260g01006.1	sp|Q6V9I6|HDT1_SOLCH	*-*-	Histone deacetylase HDT1	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf05484g02009.1	sp|Q8FM80|DNAJ2_COREF	*-*-	Chaperone protein DnaJ 2	IPR001623 (DnaJ domain)	
Niben101Scf03374g06005.1	AT2G45360.1	***-	Protein of unknown function (DUF1442) LENGTH=215	IPR009902 (Protein of unknown function DUF1442), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00119g05010.1	sp|P34930|HS71A_PIG	***-	Heat shock 70 kDa protein 1A	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf00883g09002.1			Unknown protein		
Niben101Scf16833g00006.1	sp|Q9H0Z9|RBM38_HUMAN	*-**	RNA-binding protein 38	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf08351g06011.1	sp|P33077|IAA4_ARATH	***-	Auxin-responsive protein IAA4	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf28230g00016.1	sp|Q9LUE2|TPS18_ARATH	*-**	Terpenoid synthase 18	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf08419g01004.1	AT1G48320.1	***-	Thioesterase superfamily protein LENGTH=156	IPR029069 (HotDog domain)	
Niben101Scf01956g12019.1	AT2G38940.1	****	phosphate transporter 1;4 LENGTH=534	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf07914g01017.1	AT5G27010.1	*-*-	ARM repeat superfamily protein LENGTH=863		
Niben101Scf04741g00002.1			Unknown protein		
Niben101Scf08690g02027.1	AT4G23930.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=187	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf06570g03022.1	sp|P69103|GBLP_TRYBB	****	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf04869g05009.1	sp|Q682D3|XRCC2_ARATH	***-	DNA repair protein XRCC2 homolog	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02616g00011.1	sp|Q6D2F1|ARNA_PECAS	*-*-	Bifunctional polymyxin resistance protein ArnA	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Ctg13008g00002.1	AT2G23420.1	*-**	nicotinate phosphoribosyltransferase 2 LENGTH=557	IPR002638 (Quinolinate phosphoribosyl transferase, C-terminal), IPR007229 (Nicotinate phosphoribosyltransferase family)	GO:0004514 (nicotinate-nucleotide diphosphorylase (carboxylating) activity), GO:0009435 (NAD biosynthetic process)
Niben101Scf08321g02007.1	ref|XP_003593540.1|	*-*-	Dihydroflavonol-4-reductase [Medicago truncatula] gb|AES63791.1| dihydroflavonol-4-reductase-like protein [Medicago truncatula]		
Niben101Scf04514g03003.1	sp|Q9LL85|WHY1_SOLTU	--*-	Single-stranded DNA-binding protein WHY1, chloroplastic		
Niben101Scf06461g09017.1	sp|Q2FJN4|AHPC_STAA3	--**	Alkyl hydroperoxide reductase subunit C	IPR012336 (Thioredoxin-like fold)	GO:0016209 (antioxidant activity), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00104g03017.1	AT4G14720.1	***-	TIFY domain/Divergent CCT motif family protein LENGTH=315	IPR010399 (Tify), IPR018467 (CO/COL/TOC1, conserved site)	
Niben101Scf06570g05001.1	sp|Q54JS5|WDR24_DICDI	*-*-	WD repeat-containing protein 24 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf05614g00001.1	sp|Q6L545|GID1_ORYSJ	***-	Gibberellin receptor GID1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Ctg11050g00004.1	sp|Q6P2Q9|PRP8_HUMAN	*-**	Pre-mRNA-processing-splicing factor 8	IPR012337 (Ribonuclease H-like domain), IPR019581 (Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding), IPR027652 (Pre-mRNA-processing-splicing factor 8)	GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0005681 (spliceosomal complex), GO:0030623 (U5 snRNA binding)
Niben101Scf04610g03007.1	sp|P26855|ATP9_MARPO	--**	ATP synthase subunit 9, mitochondrial	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf15496g00009.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR015757 (Calcineurin B protein)	GO:0005509 (calcium ion binding)
Niben101Scf00302g02012.1	sp|Q5R7B8|KLH20_PONAB	*-*-	Kelch-like protein 20	IPR013989 (Development/cell death domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf21468g00004.1	sp|Q06849|ARL2_DROME	***-	ADP-ribosylation factor-like protein 2	IPR003579 (Small GTPase superfamily, Rab type), IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf01922g04007.1			Unknown protein		
Niben101Scf02195g06011.1	sp|Q7T0B0|STK40_XENLA	*-**	Serine/threonine-protein kinase 40	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01768g04016.1	sp|Q9M2Z5|FBL53_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01392g01019.1	sp|O04609|WRK22_ARATH	****	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02413g02010.1	ref|XP_003629913.1|	*-*-	ATP synthase subunit-like protein [Medicago truncatula]		
Niben101Scf05767g04010.1	AT2G27080.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=260	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf05692g04001.1	sp|O48766|GUN11_ARATH	***-	Endoglucanase 11	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02720g10009.1	sp|Q9UTE6|MAK16_SCHPO	*-*-	Protein mak16	IPR029004 (Ribosomal L28e/Mak16)	
Niben101Scf11844g02003.1	gb|ADQ28470.1|	*-*-	cytochrome c biogenesis B, partial (mitochondrion) [Zannichellia palustris]		
Niben101Scf04392g05003.1			Unknown protein		
Niben101Scf04894g00026.1	sp|Q04967|HSP76_PIG	*-*-	Heat shock 70 kDa protein 6	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf10152g03004.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf04732g01004.1	sp|Q9STF0|LRKS3_ARATH	****	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf15836g04008.1	sp|Q4FUE0|RL18_PSYA2	-**-	50S ribosomal protein L18		
Niben101Scf04184g00001.1	sp|Q9I7W5|SAS10_DROME	*-*-	Something about silencing protein 10	IPR007146 (Sas10/Utp3/C1D), IPR018972 (Sas10 C-terminal domain)	
Niben101Scf05804g02004.1	AT2G10940.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=291	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02706g04004.1	ref|XP_002519247.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF43111.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06739g01006.1	sp|O81211|RBOHE_ARATH	*-**	Respiratory burst oxidase homolog protein E	IPR013623 (NADPH oxidase Respiratory burst)	GO:0004601 (peroxidase activity), GO:0050664 (oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf02772g07011.1	AT1G67140.3	*-*-	HEAT repeat-containing protein LENGTH=2223	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01005g02011.1	gb|ABA99346.2|	--*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf08391g03003.1	sp|Q07878|VPS13_YEAST	--*-	Vacuolar protein sorting-associated protein 13	IPR009543 (Vacuolar protein sorting-associated protein 13 domain), IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf01322g04020.1	AT2G25800.1	***-	Protein of unknown function (DUF810) LENGTH=987	IPR008528 (Protein of unknown function DUF810)	
Niben101Scf08466g01005.1	AT5G39840.1	***-	ATP-dependent RNA helicase, mitochondrial, putative LENGTH=776	IPR001650 (Helicase, C-terminal), IPR022192 (Mitochondrial degradasome RNA helicase subunit, C-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0016817 (hydrolase activity, acting on acid anhydrides)
Niben101Scf03103g00016.1	AT5G19760.1	*-*-	Mitochondrial substrate carrier family protein LENGTH=298	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf02904g00014.1	ref|XP_002521307.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF41081.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02406g04044.1	gb|AER28834.1|	*-*-	COSII_At2g15890-like protein [Solanum volubile]		
Niben101Scf01005g00020.1	gb|KEH33178.1|	***-	leguminosin group485 secreted peptide [Medicago truncatula]		
Niben101Scf02914g02025.1	emb|CDY53329.1|	*-*-	BnaAnng12320D [Brassica napus]		
Niben101Scf07320g00020.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf04759g00001.1	ref|XP_002518178.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF44311.1| conserved hypothetical protein [Ricinus communis]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf05017g04011.1	sp|Q9C912|R35A3_ARATH	***-	60S ribosomal protein L35a-3	IPR001780 (Ribosomal protein L35A), IPR009000 (Translation protein, beta-barrel domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03671g03023.1	sp|Q6Z6W2|MAD57_ORYSJ	*-*-	MADS-box transcription factor 57	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00594g00001.1	sp|Q9FVN0|AMT13_SOLLC	****	Ammonium transporter 1 member 3	IPR001905 (Ammonium transporter), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf12886g00009.1	emb|CDX85638.1|	***-	BnaA02g01750D [Brassica napus]		
Niben101Scf15704g00006.1	sp|Q9FE67|ERF80_ARATH	*-**	Ethylene-responsive transcription factor 9	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00351g05002.1	AT4G37900.1	***-	Protein of unknown function (duplicated DUF1399) LENGTH=787	IPR009836 (Protein of unknown function DUF1399)	
Niben101Scf00927g02021.1	sp|O42993|FKBP_SCHPO	*-*-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf03786g01009.1	sp|Q9SR40|LAC7_ARATH	***-	Laccase-7	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02854g02011.1	ref|XP_002524585.1|	****	nucleic acid binding protein, putative [Ricinus communis] gb|EEF37793.1| nucleic acid binding protein, putative [Ricinus communis]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf03437g02003.1	gb|AAD25575.1|	--*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf10881g00042.1	pir||S14115	*-*-	NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion		
Niben101Scf03114g07011.1	ref|NP_001119055.1|	-**-	conserved peptide upstream open reading frame 12 [Arabidopsis thaliana] gb|AEE85093.1| uncharacerized protein [Arabidopsis thaliana]		
Niben101Scf01520g04005.1	sp|Q43011|ASNS2_ORYSJ	*-*-	Asparagine synthetase [glutamine-hydrolyzing] 2	IPR024286 (Domain of unknown function DUF3700), IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf11341g00025.1	sp|Q88EH6|ACSA1_PSEPK	*-*-	Acetyl-coenzyme A synthetase 1	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00585g02015.1	AT2G17220.1	****	Protein kinase superfamily protein LENGTH=414	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04967g04002.1	sp|Q94AH6|CUL1_ARATH	****	Cullin-1	IPR001373 (Cullin, N-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf08613g02006.1	sp|O65572|CCD1_ARATH	***-	Carotenoid 9,10(9',10')-cleavage dioxygenase 1	IPR004294 (Carotenoid oxygenase)	
Niben101Scf07984g04018.1	gb|ADE80952.1|	--*-	NBS-LRR class disease resistance protein [Oryza sativa Japonica Group]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf13118g00034.1	sp|Q93ZI4|BGL10_ARATH	***-	Beta-glucosidase 10	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04514g03005.1	sp|Q9LL85|WHY1_SOLTU	*-**	Single-stranded DNA-binding protein WHY1, chloroplastic	IPR013742 (Plant transcription factor)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03445g06001.1	sp|Q10430|SPC25_SCHPO	*-*-	Kinetochore protein spc25	IPR013255 (Chromosome segregation protein Spc25)	
Niben101Scf05548g02018.1	sp|P62881|GBB5_MOUSE	*-**	Guanine nucleotide-binding protein subunit beta-5	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01119g05001.1	AT1G23740.1	****	Oxidoreductase, zinc-binding dehydrogenase family protein LENGTH=386	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf13231g03017.1	ref|NP_001052354.1|	***-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf00594g07001.1	sp|Q67QB5|SAT_SYMTH	*-*-	Sulfate adenylyltransferase	IPR015947 (PUA-like domain)	
Niben101Scf01948g00015.1	ref|NP_001105793.1|	***-	alkaline alpha galactosidase 1 [Zea mays] alkaline alpha galactosidase 1 [Zea mays]	IPR008811 (Glycosyl hydrolases 36), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf08738g00003.1	emb|CDY33258.1|	*-*-	BnaC01g37310D [Brassica napus]		
Niben101Scf07672g00017.1	AT5G05830.1	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=204	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf11937g02018.1	sp|Q00624|ASOL_BRANA	*-*-	L-ascorbate oxidase homolog	IPR008972 (Cupredoxin)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00739g02012.1	sp|Q19QU3|ZRAB2_PIG	--**	Zinc finger Ran-binding domain-containing protein 2	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf07790g02007.1			Unknown protein		
Niben101Scf06025g02001.1	AT3G02750.3	***-	Protein phosphatase 2C family protein LENGTH=527	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf01696g00011.1	sp|Q8X8P2|YCEA_ECO57	--*-	UPF0176 protein YceA	IPR001763 (Rhodanese-like domain)	
Niben101Scf02790g03007.1	sp|Q9LNP6|NFYA8_ARATH	*-**	Nuclear transcription factor Y subunit A-8	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0016602 (CCAAT-binding factor complex)
Niben101Scf11168g00003.1			Unknown protein		
Niben101Scf01323g05003.1	AT3G21690.1	*-*-	MATE efflux family protein LENGTH=506		
Niben101Scf01934g04021.1	AT3G17030.1	*-*-	Nucleic acid-binding proteins superfamily LENGTH=668	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf10241g02011.1	ref|XP_002516088.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46090.1| conserved hypothetical protein [Ricinus communis]	IPR001322 (Lamin Tail Domain)	
Niben101Scf06027g00010.1	sp|P01122|RHO_APLCA	****	Ras-like GTP-binding protein RHO	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02694g06017.1	emb|CDX84714.1|	***-	BnaA03g15160D [Brassica napus]	IPR028346 (HAUS augmin-like complex subunit 2)	GO:0031023 (microtubule organizing center organization), GO:0051225 (spindle assembly)
Niben101Scf08843g01010.1	sp|Q9STX1|ACBP3_ARATH	*-**	Acyl-CoA-binding domain-containing protein 3	IPR014352 (FERM/acyl-CoA-binding protein, 3-helical bundle)	GO:0000062 (fatty-acyl-CoA binding)
Niben101Scf02625g04001.1	sp|Q7UUZ7|FTSH1_RHOBA	*-**	ATP-dependent zinc metalloprotease FtsH 1	IPR001270 (ClpA/B family), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf05959g00008.1	AT3G26560.1	*-**	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004386 (helicase activity)
Niben101Scf03069g04005.1	gb|AEW48196.1|	*-*-	disease resistance protein RGH7 [Solanum chacoense]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00717g00011.1	sp|Q9LUM1|LOR11_ARATH	***-	Protein LURP-one-related 11	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf03534g02011.1	sp|B0K9I5|SPEE_THEP3	***-	Polyamine aminopropyl transferase	IPR001045 (Spermidine/spermine synthases family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase), IPR030373 (Polyamine biosynthesis domain, conserved site)	GO:0003824 (catalytic activity)
Niben101Scf00383g03003.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01036g03001.1	sp|P15904|POR_AVESA	****	Protochlorophyllide reductase	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016630 (protochlorophyllide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00077g05004.1	sp|Q5JNZ3|ZN311_HUMAN	*-*-	Zinc finger protein 311	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01063g05023.1	sp|P31687|4CL2_SOYBN	***-	4-coumarate--CoA ligase 2	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04869g06008.1			Unknown protein		
Niben101Scf14102g01008.1	sp|Q6BZF6|SSN2_DEBHA	--*-	Mediator of RNA polymerase II transcription subunit 13	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf05306g02006.1	sp|Q84TH5|AB25G_ARATH	***-	ABC transporter G family member 25	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf03937g03004.1	sp|Q9SAC4|FB2_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02929g01019.1	gb|AGZ90706.1|	*-*-	maturase, partial (mitochondrion) [Forsskaolea angustifolia]	IPR000477 (Reverse transcriptase domain)	
Niben101Scf17561g00009.1	sp|O23039|ZIP5_ARATH	****	Zinc transporter 5	IPR003689 (Zinc/iron permease)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02123g10017.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf00017g04010.1	gb|ABF94077.1|	--*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf04283g10008.1	sp|Q9LE82|RAGP1_ARATH	***-	RAN GTPase-activating protein 1	IPR003590 (Leucine-rich repeat, ribonuclease inhibitor subtype), IPR025265 (WPP domain)	
Niben101Scf01911g13012.1	sp|O82811|NRT21_ARATH	***-	High-affinity nitrate transporter 2.1	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf06912g00006.1	emb|CDY09808.1|	***-	BnaC09g43530D [Brassica napus]		
Niben101Scf04813g00007.1	sp|Q66H85|ANKZ1_RAT	*-*-	Ankyrin repeat and zinc finger domain-containing protein 1	IPR007087 (Zinc finger, C2H2), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf05106g00003.1	sp|Q93VR4|ML423_ARATH	***-	MLP-like protein 423	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf08792g00028.1	sp|A8F9Q8|LDH_BACP2	--*-	L-lactate dehydrogenase	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf05609g02018.1	sp|Q9FUY2|LEUNG_ARATH	--*-	Transcriptional corepressor LEUNIG		
Niben101Scf02944g00006.1	sp|Q8DLP3|ATPA_THEEB	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR004100 (ATPase, F1 complex alpha/beta subunit, N-terminal domain), IPR023366 (ATP synthase subunit alpha-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015992 (proton transport), GO:0046034 (ATP metabolic process)
Niben101Scf06837g01008.1	gb|KEH44093.1|	-**-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf01494g06002.1	AT1G05675.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=453	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00248g02001.1			Unknown protein		
Niben101Scf01100g06016.1	AT4G12700.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=561		
Niben101Scf08820g01004.1	sp|Q8YPW9|SYK_NOSS1	****	Lysine--tRNA ligase	IPR012340 (Nucleic acid-binding, OB-fold), IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004824 (lysine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006430 (lysyl-tRNA aminoacylation)
Niben101Scf09672g01005.1	sp|Q9LPS1|HXK3_ARATH	****	Hexokinase-3	IPR001312 (Hexokinase)	GO:0004396 (hexokinase activity), GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0006096 (glycolytic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00109g08027.1	sp|Q67ZU1|LIP2_ARATH	***-	Triacylglycerol lipase 2	IPR006693 (Partial AB-hydrolase lipase domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf00327g00007.1	sp|Q9ZS51|PMP22_ARATH	****	Peroxisomal membrane protein PMP22	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf06216g01001.1	sp|P57724|PCBP4_MOUSE	--**	Poly(rC)-binding protein 4	IPR004088 (K Homology domain, type 1)	GO:0003723 (RNA binding)
Niben101Scf05348g01020.1	AT4G11990.1	*-**	Cell cycle regulated microtubule associated protein LENGTH=501	IPR009675 (TPX2)	GO:0005819 (spindle), GO:0005874 (microtubule), GO:0007067 (mitotic nuclear division)
Niben101Scf37888g00019.1	sp|Q9SGS2|HMGB9_ARATH	***-	High mobility group B protein 9	IPR001606 (ARID DNA-binding domain), IPR009071 (High mobility group box domain)	GO:0003677 (DNA binding)
Niben101Scf08479g01004.1			Unknown protein		
Niben101Scf01150g00002.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein		
Niben101Scf00982g02006.1	sp|Q8H157|PTR19_ARATH	***-	Protein NRT1/ PTR FAMILY 4.6	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf11515g00014.1	AT2G22560.1	*-*-	Kinase interacting (KIP1-like) family protein LENGTH=947		
Niben101Scf00568g03004.1	sp|Q566M8|RN150_DANRE	--*-	RING finger protein 150	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01076g05026.1	AT3G61680.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=649	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf04084g00005.1	sp|O65390|APA1_ARATH	****	Aspartic proteinase A1	IPR001461 (Aspartic peptidase), IPR011001 (Saposin-like), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis), GO:0006629 (lipid metabolic process)
Niben101Scf01640g04004.1	AT1G22990.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=152	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf05060g09005.1	gb|AES67951.2|	*-*-	AKAP7 2'5' RNA ligase-like domain protein [Medicago truncatula]	IPR019510 (Protein kinase A anchor protein, nuclear localisation signal domain)	
Niben101Scf02459g10025.1	ref|WP_012929442.1|	--*-	magnesium chelatase [Spirosoma linguale] ref|YP_003389740.1| ATPase AAA [Spirosoma linguale DSM 74] gb|ADB40941.1| ATPase associated with various cellular activities AAA_3 [Spirosoma linguale DSM 74]		
Niben101Scf00090g01010.1	sp|Q9C9X3|ANXD5_ARATH	***-	Annexin D5	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf02911g06015.1	sp|E2RQ15|RAB25_CANFA	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf09696g01127.1	ref|YP_002608396.1|	*-*-	orf86 [Vitis vinifera] emb|CAQ77655.1| orf86 [Vitis vinifera] gb|ACS15212.1| ORF86 [Vitis vinifera]		
Niben101Scf01284g04005.1	sp|Q28141|DHX9_BOVIN	--*-	ATP-dependent RNA helicase A	IPR014720 (Double-stranded RNA-binding domain)	
Niben101Scf02438g00007.1	sp|Q9FM96|PSL4_ARATH	*-*-	Glucosidase 2 subunit beta	IPR028146 (Glucosidase II beta subunit, N-terminal)	
Niben101Scf06734g00004.1	sp|Q9M2E8|HDG1_ARATH	*-*-	Homeobox-leucine zipper protein HDG1		
Niben101Scf02804g00010.1	AT5G40030.1	*-**	Protein kinase superfamily protein LENGTH=499	IPR000014 (PAS domain), IPR000700 (PAS-associated, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004871 (signal transducer activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03766g01008.1	sp|P92792|TOM20_SOLTU	****	Mitochondrial import receptor subunit TOM20	IPR010547 (Plant specific mitochondrial import receptor subunit TOM20)	GO:0005515 (protein binding), GO:0005742 (mitochondrial outer membrane translocase complex), GO:0045040 (protein import into mitochondrial outer membrane)
Niben101Scf06876g01030.1	sp|P32518|DUT_SOLLC	*-*-	Deoxyuridine 5'-triphosphate nucleotidohydrolase	IPR008180 (Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase), IPR029054 (dUTPase-like)	GO:0016787 (hydrolase activity), GO:0046080 (dUTP metabolic process)
Niben101Scf08716g01029.1	AT2G17170.1	****	Protein kinase superfamily protein LENGTH=328	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01396g07017.1	sp|Q84KJ6|AMT31_ORYSJ	*-**	Ammonium transporter 3 member 1	IPR001905 (Ammonium transporter), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf03036g05003.1	sp|Q92575|UBXN4_HUMAN	*-*-	UBX domain-containing protein 4	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf03504g06012.1	sp|Q6DW74|DGDG1_LOTJA	***-	Digalactosyldiacylglycerol synthase 1, chloroplastic		
Niben101Scf03674g00001.1	sp|Q9SR71|TAF12_ARATH	*-**	Transcription initiation factor TFIID subunit 12	IPR009072 (Histone-fold)	GO:0005669 (transcription factor TFIID complex), GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity)
Niben101Scf07729g01003.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf09360g01009.1	sp|Q9SYK0|HEXO2_ARATH	****	Beta-hexosaminidase 2	IPR017853 (Glycoside hydrolase superfamily), IPR025705 (Beta-hexosaminidase), IPR029018 (Chitobiase/beta-hexosaminidase domain 2-like)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004563 (beta-N-acetylhexosaminidase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf14697g01004.1	AT3G56880.1	***-	VQ motif-containing protein LENGTH=245	IPR008889 (VQ)	
Niben101Scf10144g01023.1	sp|Q5HNW7|DNAJ_STAEQ	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf02929g03011.1			Unknown protein		
Niben101Scf10712g00031.1	gb|KEH44534.1|	****	carbon-nitrogen family hydrolase [Medicago truncatula]	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf02798g01059.1			Unknown protein		
Niben101Scf06261g03005.1			Unknown protein		
Niben101Scf02280g09006.1	sp|Q54GB2|CTSL2_DICDI	*-**	CTD small phosphatase-like protein 2	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding), GO:0016791 (phosphatase activity)
Niben101Scf00773g04001.1			Unknown protein		
Niben101Scf05895g02016.1	sp|Q9CPU0|LGUL_MOUSE	--**	Lactoylglutathione lyase	IPR018146 (Glyoxalase I, conserved site), IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	GO:0004462 (lactoylglutathione lyase activity), GO:0046872 (metal ion binding)
Niben101Scf02074g06071.1			Unknown protein		
Niben101Scf00680g00003.1			Unknown protein		
Niben101Scf10678g00012.1	ref|WP_011396068.1|	--*-	xylanase/chitin deacetylase [Hahella chejuensis] ref|YP_433423.1| xylanase/chitin deacetylase [Hahella chejuensis KCTC 2396] gb|ABC28998.1| predicted xylanase/chitin deacetylase [Hahella chejuensis KCTC 2396]		
Niben101Scf11123g00030.1	AT4G30360.1	***-	cyclic nucleotide-gated channel 17 LENGTH=720	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf10774g02003.1	AT2G36026.1	*-*-	Ovate family protein LENGTH=183	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf05697g07001.1	sp|Q9LUW5|RH53_ARATH	*-**	DEAD-box ATP-dependent RNA helicase 53	IPR011545 (DEAD/DEAH box helicase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf04914g00007.1			Unknown protein		
Niben101Scf04462g01007.1	sp|Q8GXL3|SPL8_ARATH	*-**	Squamosa promoter-binding-like protein 8	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf00348g01006.1	sp|Q9SSQ2|FB55_ARATH	--*-	F-box protein		
Niben101Scf01596g12016.1	AT4G34860.1	*-*-	Plant neutral invertase family protein LENGTH=571	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf01481g00009.1	sp|Q9Y169|EXT2_DROME	*-*-	Exostosin-2	IPR006710 (Glycoside hydrolase, family 43), IPR011040 (Sialidases), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0006024 (glycosaminoglycan biosynthetic process), GO:0015012 (heparan sulfate proteoglycan biosynthetic process), GO:0016021 (integral component of membrane)
Niben101Scf03757g00005.1	emb|CDY01049.1|	*-*-	BnaC05g41510D [Brassica napus]		
Niben101Scf04884g01013.1	AT1G13220.2	***-	nuclear matrix constituent protein-related LENGTH=1128		
Niben101Scf31633g00005.1	AT2G35800.1	***-	mitochondrial substrate carrier family protein LENGTH=823	IPR002067 (Mitochondrial carrier protein), IPR011992 (EF-hand domain pair), IPR023395 (Mitochondrial carrier domain)	GO:0005509 (calcium ion binding), GO:0055085 (transmembrane transport)
Niben101Scf14883g02013.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf01918g03004.1	sp|Q9SXD8|PPR90_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf01063g06002.1	emb|CDX93551.1|	***-	BnaA06g04970D [Brassica napus]		
Niben101Scf01181g03002.1	AT1G18170.1	***-	FKBP-like peptidyl-prolyl cis-trans isomerase family protein LENGTH=247	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf00779g00016.1	sp|Q5JLS2|CIPKC_ORYSJ	*-**	CBL-interacting protein kinase 12	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01188g07001.1	ref|XP_002486791.1|	--*-	gag/polymerase/env polyprotein, putative [Talaromyces stipitatus ATCC 10500] gb|EED14553.1| gag/polymerase/env polyprotein, putative [Talaromyces stipitatus ATCC 10500]		
Niben101Scf07437g00001.1	sp|Q54VZ8|EXOC8_DICDI	*-*-	Exocyst complex component 8	IPR016159 (Cullin repeat-like-containing domain)	
Niben101Ctg11891g00001.1	AT5G50180.1	*-**	Protein kinase superfamily protein LENGTH=346	IPR011009 (Protein kinase-like domain), IPR015784 (Putative serine/threonine-protein kinase, plants)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00046g04019.1	sp|Q9LY84|GDL76_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01985g02005.1	AT1G48910.1	***-	Flavin-containing monooxygenase family protein LENGTH=383	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02012g00005.1	sp|O04539|SNL4_ARATH	***-	Paired amphipathic helix protein Sin3-like 4	IPR003822 (Paired amphipathic helix), IPR013194 (Histone deacetylase interacting)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02908g01016.1	ref|WP_026735795.1|	***-	molecular chaperone DnaJ [Fischerella sp. PCC 9605]	IPR021788 (Protein of unknown function DUF3353)	
Niben101Scf04253g01006.1	sp|Q9C9Y4|FB136_ARATH	*-*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf11884g00021.1	sp|Q9LMC9|GLT2_ARATH	***-	Germin-like protein subfamily T member 2	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf02269g01004.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02832g00006.1	sp|Q9UYV2|SYC_PYRAB	*-*-	Cysteine--tRNA ligase	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR024909 (Cysteinyl-tRNA synthetase/mycothiol ligase)	
Niben101Scf08544g01008.1	sp|Q9STM4|C3H43_ARATH	***-	Zinc finger CCCH domain-containing protein 43	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf01696g03002.1	gb|AET02503.2|	***-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf06369g05024.1	AT4G11560.1	***-	bromo-adjacent homology (BAH) domain-containing protein LENGTH=587	IPR001025 (Bromo adjacent homology (BAH) domain), IPR003618 (Transcription elongation factor S-II, central domain)	GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf05146g00010.1	gb|ABU50826.1|	*-*-	GAGA-binding transcriptional activator [Arabidopsis arenosa]	IPR010409 (GAGA-binding transcriptional activator)	
Niben101Scf05522g00011.1			Unknown protein		
Niben101Scf03349g00001.1			Unknown protein		
Niben101Scf04872g00019.1	AT3G62790.1	***-	NADH-ubiquinone oxidoreductase-related LENGTH=83		
Niben101Scf05948g02017.1			Unknown protein		
Niben101Scf05731g00005.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00466g04036.1	sp|Q40401|CALR_NICPL	***-	Calreticulin	IPR001580 (Calreticulin/calnexin), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005783 (endoplasmic reticulum), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf02380g00007.1	gb|AAB97814.1|	--*-	PttA' [Petunia x hybrida]		
Niben101Scf00383g01004.1	AT4G36280.1	***-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=626	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf06653g01022.1			Unknown protein		
Niben101Scf05955g02010.1	gb|AAT46619.1|	--*-	hepatocellular carcinoma-associated antigen 59 [Homo sapiens]	IPR010756 (Hepatocellular carcinoma-associated antigen 59)	
Niben101Scf00851g02012.1	sp|Q9SR06|CLP1_ARATH	***-	Protein CLP1 homolog	IPR010655 (Pre-mRNA cleavage complex II Clp1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02929g05025.1	ref|NP_064026.1|	***-	orf145 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] dbj|BAA99337.1| orf145 [Beta vulgaris subsp. vulgaris]		
Niben101Scf04231g01026.1	AT3G24630.1	*-*-	unknown protein; Has 5348 Blast hits to 3182 proteins in 353 species: Archae - 0; Bacteria - 481; Metazoa - 1959; Fungi - 405; Plants - 180; Viruses - 10; Other Eukaryotes - 2313 (source: NCBI BLink). LENGTH=724		
Niben101Scf10324g00007.1	sp|F4IVU1|ARC2B_ARATH	****	Actin-related protein 2/3 complex subunit 2B	IPR007188 (Actin-related protein 2/3 complex subunit 2)	GO:0005885 (Arp2/3 protein complex), GO:0015629 (actin cytoskeleton), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf01142g04002.1	AT1G80520.1	***-	Sterile alpha motif (SAM) domain-containing protein LENGTH=192	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf03280g01015.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016187 (C-type lectin fold)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02063g06006.1	sp|Q9ZWQ8|PAP_CITUN	--*-	Plastid-lipid-associated protein, chloroplastic	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf05107g03023.1	sp|Q681N2|PUB15_ARATH	*-*-	U-box domain-containing protein 15	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf07058g04002.1	AT3G28580.1	***-	P-loop containing nucleoside triphosphate hydrolases superfamily protein LENGTH=500	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01628g00023.1	sp|Q4FLM2|RS19_PELUB	--*-	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06461g07003.1	AT5G20820.1	***-	SAUR-like auxin-responsive protein family LENGTH=127	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf24567g00008.1	gb|KEH19175.1|	*-*-	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf05610g03025.1	sp|O81001|GRF1_ARATH	***-	Growth-regulating factor 1	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf03209g00028.1	sp|P0CL95|APTH1_CRYNB	***-	Acyl-protein thioesterase 1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf05458g00003.1	AT5G48930.1	****	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase LENGTH=433	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf25996g00006.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04664g04022.1	sp|Q9LQZ5|SRS5_ARATH	***-	Protein SHI RELATED SEQUENCE 5	IPR007818 (Protein of unknown function DUF702)	
Niben101Scf03450g00017.1	sp|Q9XHP0|11S2_SESIN	***-	11S globulin seed storage protein 2	IPR006044 (11-S seed storage protein, plant)	GO:0045735 (nutrient reservoir activity)
Niben101Scf29279g00003.1			Unknown protein		
Niben101Scf02621g03015.1	sp|Q28E45|MCM10_XENTR	*-*-	Protein MCM10 homolog	IPR015408 (Zinc finger, Mcm10/DnaG-type)	GO:0005634 (nucleus), GO:0006260 (DNA replication)
Niben101Scf22015g02046.1	sp|P09003|MI25_TOBAC	*-**	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf04684g03015.1	sp|Q9DAI6|F135B_MOUSE	--*-	Protein FAM135B		
Niben101Scf05671g01015.1	gb|AFM91989.1|	--*-	RD-22 like protein, partial [Helianthus annuus]		
Niben101Scf02890g00008.1	sp|Q9LZM3|PPCS2_ARATH	***-	Phosphopantothenate--cysteine ligase 2	IPR007085 (DNA/pantothenate metabolism flavoprotein, C-terminal)	
Niben101Scf02982g03003.1	AT4G13840.1	****	HXXXD-type acyl-transferase family protein LENGTH=428	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf06686g01022.1	sp|Q8W4S4|VHAA3_ARATH	****	V-type proton ATPase subunit a3	IPR002490 (V-type  ATPase, V0 complex, 116kDa subunit family)	GO:0000220 (vacuolar proton-transporting V-type ATPase, V0 domain), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf10441g01004.1	sp|Q9FH80|BAM8_ARATH	****	Beta-amylase 8	IPR001554 (Glycoside hydrolase, family 14), IPR008540 (BZR1, transcriptional repressor), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf01150g01005.1	sp|Q75D00|ACT_ASHGO	*-*-	Actin	IPR004000 (Actin family)	
Niben101Scf03794g01015.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01125g00009.1	sp|Q6AP52|RL30_DESPS	-***	50S ribosomal protein L30	IPR005996 (Ribosomal protein L30, bacterial-type), IPR016082 (Ribosomal protein L30, ferredoxin-like fold domain)	GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf04963g04004.1	AT5G36930.2	***-	Disease resistance protein (TIR-NBS-LRR class) family LENGTH=1191	IPR000157 (Toll/interleukin-1 receptor homology (TIR) domain), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0043531 (ADP binding)
Niben101Scf05816g01002.1	AT5G17640.1	***-	Protein of unknown function (DUF1005) LENGTH=432	IPR010410 (Protein of unknown function DUF1005)	
Niben101Scf03486g03002.1	ref|WP_002974003.1|	***-	PF07386 family protein [Lept [Leptospira terpstrae serovar Hualin str. LT 11-33 = ATCC 700639]	IPR010865 (Protein of unknown function DUF1499)	
Niben101Scf01273g01010.1	sp|Q54GB2|CTSL2_DICDI	*-**	CTD small phosphatase-like protein 2	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding), GO:0016791 (phosphatase activity)
Niben101Scf05551g00006.1	AT1G45976.1	*-**	S-ribonuclease binding protein 1 LENGTH=325	IPR001841 (Zinc finger, RING-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01479g03013.1	AT2G30880.1	***-	Pleckstrin homology (PH) domain-containing protein LENGTH=504	IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf06967g03009.1	AT3G52990.1	*-**	Pyruvate kinase family protein LENGTH=527	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf03284g07021.1	AT1G15390.1	****	peptide deformylase 1A LENGTH=269	IPR000181 (Formylmethionine deformylase), IPR023635 (Peptide deformylase)	GO:0005506 (iron ion binding), GO:0042586 (peptide deformylase activity)
Niben101Scf10015g01016.1	sp|Q9FNA4|ELP1_ARATH	*-*-	Elongator complex protein 1	IPR006849 (IKI3)	
Niben101Scf00144g02015.1	AT5G04050.2	*-**	RNA-directed DNA polymerase (reverse transcriptase) LENGTH=695	IPR000477 (Reverse transcriptase domain), IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf02681g01015.1	sp|Q9MTQ6|RCCR_HORVU	***-	Red chlorophyll catabolite reductase	IPR009439 (Red chlorophyll catabolite reductase)	
Niben101Scf10103g03013.1	sp|Q86V35|CABP7_HUMAN	*-**	Calcium-binding protein 7	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf04325g01024.1			Unknown protein		
Niben101Scf09924g03001.1	sp|Q4VNZ8|DEF59_ARATH	--*-	Defensin-like protein 59		
Niben101Scf11205g00003.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf09099g00025.1	AT1G34320.1	***-	Protein of unknown function (DUF668) LENGTH=657	IPR007700 (Protein of unknown function DUF668), IPR021864 (Protein of unknown function DUF3475)	
Niben101Scf08047g03011.1	sp|Q96CT7|CC124_HUMAN	*-*-	Coiled-coil domain-containing protein 124	IPR010422 (Protein of unknown function DUF1014)	
Niben101Scf02939g01003.1	gb|EMT08986.1|	***-	Pre-mRNA-processing factor 19-2-like protein [Aegilops tauschii]	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013915 (Pre-mRNA-splicing factor 19), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf04407g01017.1	AT1G74720.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1081	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf02474g03003.1	sp|Q54NC0|HUS1_DICDI	****	Checkpoint protein hus1 homolog	IPR007150 (Checkpoint protein Hus1/Mec3)	GO:0000077 (DNA damage checkpoint), GO:0006281 (DNA repair), GO:0030896 (checkpoint clamp complex)
Niben101Scf01660g02013.1	AT4G14090.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=456	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02595g02015.1	sp|Q54U63|LVSC_DICDI	*-*-	BEACH domain-containing protein lvsC	IPR011989 (Armadillo-like helical), IPR013320 (Concanavalin A-like lectin/glucanase domain)	
Niben101Scf29076g00013.1	AT3G24030.1	****	hydroxyethylthiazole kinase family protein LENGTH=276	IPR029056 (Ribokinase-like)	GO:0004417 (hydroxyethylthiazole kinase activity), GO:0009228 (thiamine biosynthetic process)
Niben101Scf04187g00030.1			Unknown protein		
Niben101Scf06200g03001.1	AT4G28440.1	***-	Nucleic acid-binding, OB-fold-like protein LENGTH=153	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf03479g05044.1	AT3G54070.1	***-	Ankyrin repeat family protein LENGTH=574	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein), IPR029472 (Gag-polypeptide of LTR copia-type)	GO:0005515 (protein binding)
Niben101Scf02124g01026.1	sp|A4K2M3|STK4_PAPAN	*-**	Serine/threonine-protein kinase 4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09099g00024.1	AT3G25120.1	***-	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein LENGTH=189	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Scf02688g05005.1	emb|CAE05840.2|	*-*-	OSJNBa0091C07.2 [Oryza sativa Japonica Group]		
Niben101Scf03239g04002.1	AT2G46140.1	***-	Late embryogenesis abundant protein LENGTH=166	IPR004864 (Late embryogenesis abundant protein, LEA-14), IPR013783 (Immunoglobulin-like fold)	GO:0009269 (response to desiccation)
Niben101Scf00593g04010.1	AT1G18870.1	*-**	isochorismate synthase 2 LENGTH=562	IPR004561 (Isochorismate synthase)	GO:0008909 (isochorismate synthase activity), GO:0009058 (biosynthetic process)
Niben101Scf07563g02007.1	AT4G34135.1	*-*-	UDP-glucosyltransferase 73B2 LENGTH=483	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf13527g00016.1	AT2G03070.1	*-*-	mediator subunit 8 LENGTH=524		
Niben101Scf18623g00003.1	sp|Q8H0T9|KTNB1_ARATH	*-*-	Katanin p80 WD40 repeat-containing subunit B1 homolog	IPR028021 (Katanin p80 subunit, C-terminal)	
Niben101Scf06590g06005.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00411g00013.1	AT1G51538.1	*-*-	Aminotransferase-like, plant mobile domain family protein LENGTH=696	IPR006904 (Protein of unknown function DUF716 (TMEM45)), IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf02085g17003.1	sp|P0CD30|NU2C1_PIPCE	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic		
Niben101Scf04444g04004.1	sp|Q6UVM4|KCNT2_RAT	*-**	Potassium channel subfamily T member 2	IPR003280 (Two pore domain potassium channel)	GO:0005267 (potassium channel activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf02740g11009.1	AT5G65660.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=136		
Niben101Scf00293g04004.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08026g01004.1	AT4G17800.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=292	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf04011g06010.1	sp|Q9UHQ4|BAP29_HUMAN	--*-	B-cell receptor-associated protein 29		
Niben101Scf00753g00002.1	sp|O04893|AGLU_SPIOL	***-	Alpha-glucosidase	IPR000322 (Glycoside hydrolase family 31), IPR011013 (Galactose mutarotase-like domain), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf01625g02005.1	sp|Q14839|CHD4_HUMAN	--**	Chromodomain-helicase-DNA-binding protein 4	IPR009057 (Homeodomain-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01150g01004.1	AT3G33520.1	***-	actin-related protein 6 LENGTH=421	IPR004000 (Actin family)	GO:0005634 (nucleus), GO:0006338 (chromatin remodeling)
Niben101Scf02093g05030.1	gb|ABE91850.1|	***-	Protein of unknown function DUF707 [Medicago truncatula] gb|ABE91966.1| Protein of unknown function DUF707 [Medicago truncatula] gb|KEH36408.1| lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf08533g03005.1	sp|Q9Y618|NCOR2_HUMAN	*-*-	Nuclear receptor corepressor 2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01701g00013.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf13429g00002.1	sp|Q8WUF8|F172A_HUMAN	--*-	Protein FAM172A		
Niben101Scf22015g02045.1	sp|Q4UK28|NUOK_RICFE	*-**	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf06252g00001.1	sp|Q9SAJ7|MTP9_ARATH	*-*-	Metal tolerance protein 9	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00861g05005.1	AT5G12460.1	***-	Protein of unknown function (DUF604) LENGTH=441	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf03328g02013.1	sp|Q39247|2ABB_ARATH	****	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	IPR000009 (Protein phosphatase 2A, regulatory subunit PR55), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0000159 (protein phosphatase type 2A complex), GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf11689g02014.1	sp|Q03172|ZEP1_MOUSE	--*-	Zinc finger protein 40	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf03267g00044.1	gb|AGI48805.1|	*-*-	ribosomal protein S4 (mitochondrion) [Lolium perenne]		
Niben101Scf03621g01017.1	sp|Q8L7S4|MP702_ARATH	****	Microtubule-associated protein 70-2	IPR009768 (Microtubule-associated protein 70)	GO:0007010 (cytoskeleton organization), GO:0008017 (microtubule binding)
Niben101Scf04084g02005.1	emb|CDY05541.1|	--*-	BnaA02g31500D [Brassica napus]		
Niben101Scf10228g01005.1	ref|XP_007015162.1|	--*-	DNA binding,zinc ion binding,DNA binding, putative isoform 2 [Theobroma cacao] gb|EOY32781.1| DNA binding,zinc ion binding,DNA binding, putative isoform 2 [Theobroma cacao]		
Niben101Scf02077g02001.1	gb|AAV68619.1|	****	anaphase promoting complex subunit 8/cell division cycle protein 23-like protein, partial [Ostreococcus tauri]	IPR007192 (Cdc23), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0005680 (anaphase-promoting complex), GO:0030071 (regulation of mitotic metaphase/anaphase transition)
Niben101Scf05210g00003.1	sp|Q9LPS9|PRNL1_ARATH	***-	Pirin-like protein	IPR012093 (Pirin), IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf00130g03001.1	sp|Q93YV6|2A5I_ARATH	****	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf02309g03002.1	ref|YP_004927590.1|	*-*-	orf101b (mitochondrion) [Brassica carinata] gb|AEH43605.1| orf101b [Brassica carinata]		
Niben101Scf05405g05004.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02156g02007.1	AT3G02540.1	****	Rad23 UV excision repair protein family LENGTH=419	IPR004806 (UV excision repair protein Rad23), IPR009060 (UBA-like), IPR029071 (Ubiquitin-related domain)	GO:0003684 (damaged DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006289 (nucleotide-excision repair), GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
Niben101Scf08508g02011.1	sp|Q9LEX0|P2A13_ARATH	***-	F-box protein PP2-A13	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Ctg03036g00004.1	sp|O48723|PLP2_ARATH	*-*-	Patatin-like protein 2	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf00116g06004.1	AT1G32910.1	****	HXXXD-type acyl-transferase family protein LENGTH=464	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02156g01010.1			Unknown protein		
Niben101Scf02078g05003.1	sp|A4QLJ2|RR14_LOBMA	***-	30S ribosomal protein S14, chloroplastic	IPR001209 (Ribosomal protein S14)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04231g01027.1	sp|Q21NS8|MSBA_SACD2	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf03268g07009.1	emb|CDX96411.1|	***-	BnaA07g30220D [Brassica napus]		
Niben101Scf13018g00013.1	AT1G66910.1	*-*-	Protein kinase superfamily protein LENGTH=666	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Ctg01820g00001.1	sp|A5FZ19|DNAK_ACICJ	*-*-	Chaperone protein DnaK	IPR013126 (Heat shock protein 70 family)	
Niben101Scf01596g01023.1	AT3G17850.1	****	Protein kinase superfamily protein LENGTH=1296	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf33433g00002.1	sp|P29429|THIO_EMENI	--*-	Thioredoxin	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf04829g02019.1	emb|CDY35227.1|	***-	BnaA01g08040D [Brassica napus]		
Niben101Scf12966g00016.1	sp|P51375|GLTB_PORPU	****	Ferredoxin-dependent glutamate synthase	IPR013785 (Aldolase-type TIM barrel), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0003824 (catalytic activity), GO:0006537 (glutamate biosynthetic process), GO:0006807 (nitrogen compound metabolic process), GO:0008152 (metabolic process), GO:0015930 (glutamate synthase activity), GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02429g07031.1	sp|P0DM58|DI3L2_ARATH	***-	DIS3-like exonuclease 2	IPR012340 (Nucleic acid-binding, OB-fold), IPR022966 (Ribonuclease II/R, conserved site), IPR028591 (DIS3-like exonuclease 2)	GO:0000175 (3'-5'-exoribonuclease activity), GO:0034427 (nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5')
Niben101Scf01415g03014.1	gb|KEH43280.1|	*-*-	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf04992g02004.1	ref|XP_007043671.1|	***-	Nuclear fusion defective 6 isoform 1 [Theobroma cacao] gb|EOX99502.1| Nuclear fusion defective 6 isoform 1 [Theobroma cacao]		
Niben101Scf07767g00008.1	sp|Q7PC79|XPOT_ARATH	***-	Exportin-T	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf05167g00005.1	sp|Q8VZ37|AP3S_ARATH	*-**	AP-3 complex subunit sigma	IPR000804 (Clathrin adaptor complex, small chain), IPR015424 (Pyridoxal phosphate-dependent transferase), IPR016635 (Adaptor protein complex, sigma subunit)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016192 (vesicle-mediated transport), GO:0016829 (lyase activity), GO:0030117 (membrane coat), GO:0030123 (AP-3 adaptor complex), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf08519g00002.1	sp|Q9BSJ8|ESYT1_HUMAN	*-*-	Extended synaptotagmin-1	IPR000008 (C2 domain), IPR019411 (Domain of unknown function DUF2404)	GO:0005515 (protein binding)
Niben101Scf05688g12002.1	AT1G54320.1	***-	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein LENGTH=349	IPR005045 (CDC50/LEM3 family)	GO:0016020 (membrane)
Niben101Scf05522g00010.1	sp|O23244|PPA25_ARATH	***-	Purple acid phosphatase 25	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf01190g02002.1	sp|Q9LQZ7|BBX21_ARATH	*-**	B-box zinc finger protein 21	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf15972g02013.1	AT5G61040.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=590		
Niben101Scf08588g00012.1	sp|Q9SIT7|PP151_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00163g07002.1	sp|Q5R6T6|WDR91_PONAB	--*-	WD repeat-containing protein 91	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf06369g05023.1	gb|KEH27432.1|	***-	DUF3527 domain protein [Medicago truncatula]	IPR021916 (Protein of unknown function DUF3527)	
Niben101Scf12011g01013.1	gb|KEH24722.1|	****	katanin p80 WD40 repeat subunit B1-like protein [Medicago truncatula]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR026962 (Katanin p80 subunit B1), IPR028021 (Katanin p80 subunit, C-terminal)	GO:0005515 (protein binding), GO:0008017 (microtubule binding), GO:0008352 (katanin complex), GO:0051013 (microtubule severing)
Niben101Scf02976g01015.1	sp|Q4UB16|RAB1_THEAN	***-	Ras-related protein Rab-1	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf03077g03005.1	AT1G27700.1	***-	Syntaxin/t-SNARE family protein LENGTH=297	IPR010989 (t-SNARE)	GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport), GO:0048193 (Golgi vesicle transport)
Niben101Scf13103g01054.1	emb|CDY05631.1|	*-*-	BnaC02g39060D [Brassica napus]		
Niben101Scf00974g01018.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00665g00011.1	ref|XP_002519298.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF43162.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08653g05002.1	sp|Q9QYE6|GOGA5_MOUSE	*-*-	Golgin subfamily A member 5		
Niben101Scf03729g02017.1	AT2G19170.1	****	subtilisin-like serine protease 3 LENGTH=815	IPR015500 (Peptidase S8, subtilisin-related), IPR023827 (Peptidase S8, subtilisin,  Asp-active site), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01048g00011.1	AT2G16030.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=231	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf05643g01012.1	sp|P42753|CCD31_ARATH	***-	Cyclin-D3-1	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf06228g01001.1	sp|Q9SD40|SRS1_ARATH	***-	Protein SHI RELATED SEQUENCE 1	IPR007818 (Protein of unknown function DUF702)	
Niben101Scf03370g08010.1	sp|Q15560|TCEA2_HUMAN	--**	Transcription elongation factor A protein 2	IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf05392g01021.1	AT1G23480.1	***-	cellulose synthase-like A3 LENGTH=556	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf00700g05004.1	sp|Q96262|PCAP1_ARATH	*-**	Plasma membrane-associated cation-binding protein 1	IPR008469 (DREPP family)	GO:0046658 (anchored component of plasma membrane), GO:0051716 (cellular response to stimulus)
Niben101Scf04015g02026.1	sp|Q3ECP6|GDL22_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04122g06005.1	AT4G21490.1	***-	NAD(P)H dehydrogenase B3 LENGTH=580	IPR011992 (EF-hand domain pair), IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0005509 (calcium ion binding), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00428g15006.1	sp|Q1GPJ8|RL19_SPHAL	*-*-	50S ribosomal protein L19	IPR001857 (Ribosomal protein L19), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10688g03004.1	sp|Q9XI36|MBD10_ARATH	*-**	Methyl-CpG-binding domain-containing protein 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf02457g01005.1	sp|F6HQ26|RU1C_VITVI	***-	U1 small nuclear ribonucleoprotein C	IPR003604 (Zinc finger, U1-type), IPR017340 (U1 small nuclear ribonucleoprotein C)	GO:0000387 (spliceosomal snRNP assembly), GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0005634 (nucleus), GO:0005685 (U1 snRNP), GO:0008270 (zinc ion binding)
Niben101Scf12852g03012.1	ref|XP_002512588.1|	--*-	GRIP and coiled-coil domain-containing protein, putative [Ricinus communis] gb|EEF50040.1| GRIP and coiled-coil domain-containing protein, putative [Ricinus communis]		
Niben101Scf08433g00012.1			Unknown protein		
Niben101Scf01958g02009.1	sp|Q9SFC6|GDIR_ARATH	****	Rho GDP-dissociation inhibitor 1	IPR000406 (RHO protein GDP dissociation inhibitor), IPR014756 (Immunoglobulin E-set)	GO:0005094 (Rho GDP-dissociation inhibitor activity), GO:0005737 (cytoplasm)
Niben101Scf14459g00007.1	sp|O64792|PIGP_ARATH	--*-	Phosphatidylinositol N-acetylglucosaminyltransferase subunit P		
Niben101Scf01489g01005.1	sp|P16098|AMYB_HORVU	*-**	Beta-amylase	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf07417g01006.1	sp|Q4V7B8|RNF44_RAT	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03710g11002.1	AT1G77470.1	****	replication factor C subunit 3 LENGTH=369	IPR003959 (ATPase, AAA-type, core), IPR008921 (DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006260 (DNA replication)
Niben101Scf30418g00004.1			Unknown protein		
Niben101Scf03010g05006.1			Unknown protein		
Niben101Scf19800g00003.1	AT1G29820.1	***-	Magnesium transporter CorA-like family protein LENGTH=540		
Niben101Scf07146g00008.1	ref|NP_565550.1|	****	protein RER1C1 [Arabidopsis thaliana] RecName: Full=Protein RER1C; Short=AtRER1C [Arabidopsis thaliana] dbj|BAA33862.1| AtRER1C [Arabidopsis thaliana] gb|AAL47450.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAB87102.2| putative integral membrane protein [Arabidopsis thaliana] gb|AAM19906.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAM63458.1| putative integral membrane protein [Arabidopsis thaliana] gb|AEC07439.1| protein RER1C1 [Arabidopsis thaliana]	IPR004932 (Retrieval of early ER protein Rer1)	GO:0016021 (integral component of membrane)
Niben101Scf00897g03002.1	sp|P46417|GSTX3_SOYBN	***-	Glutathione S-transferase 3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf05654g00012.1			Unknown protein		
Niben101Scf03788g00005.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf31945g00008.1	sp|Q8L6Z8|XYLL1_ARATH	*-*-	D-xylose-proton symporter-like 1		
Niben101Scf15670g00014.1	sp|Q9ZUN4|ACCO1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf05883g02002.1	sp|Q942D4|BURP3_ORYSJ	***-	BURP domain-containing protein 3	IPR004873 (BURP domain)	
Niben101Scf02340g08007.1			Unknown protein		
Niben101Scf05912g01012.1	sp|Q94JM3|ARFB_ARATH	****	Auxin response factor 2	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf03965g03007.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07584g02013.1	AT3G52790.1	*-*-	peptidoglycan-binding LysM domain-containing protein LENGTH=109		
Niben101Scf12443g01010.1	sp|Q54C24|VPS35_DICDI	***-	Vacuolar protein sorting-associated protein 35	IPR005378 (Vacuolar protein sorting-associated protein 35, Vps35)	GO:0015031 (protein transport), GO:0030904 (retromer complex), GO:0042147 (retrograde transport, endosome to Golgi)
Niben101Scf06123g04002.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05535g02011.1			Unknown protein		
Niben101Scf03396g07030.1	ref|NP_974835.1|	*-*-	alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana] gb|AED93485.1| alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]		
Niben101Scf07391g04026.1			Unknown protein		
Niben101Scf00305g05032.1	sp|A7X274|DAPH_STAA1	*-*-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	IPR011004 (Trimeric LpxA-like)	
Niben101Scf16114g01009.1	sp|P09415|RL18_GEOSE	--*-	50S ribosomal protein L18	IPR005484 (Ribosomal protein L18/L5)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07244g03020.1	sp|Q9FZ70|FDL1_ARATH	*-*-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00869g06024.1	sp|P0A2I6|PARE_SALTI	*-**	DNA topoisomerase 4 subunit B	IPR001241 (DNA topoisomerase, type IIA), IPR024946 (Arginine repressor C-terminal-like domain)	GO:0003677 (DNA binding), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0006265 (DNA topological change)
Niben101Scf00193g01002.1	sp|Q42510|GNOM_ARATH	****	ARF guanine-nucleotide exchange factor GNOM	IPR000904 (Sec7 domain), IPR016024 (Armadillo-type fold), IPR023394 (Sec7 domain, alpha orthogonal bundle)	GO:0005086 (ARF guanyl-nucleotide exchange factor activity), GO:0005488 (binding), GO:0032012 (regulation of ARF protein signal transduction)
Niben101Scf00854g08051.1			Unknown protein		
Niben101Scf00069g14006.1	sp|B9JDT5|RL16_AGRRK	***-	50S ribosomal protein L16	IPR000114 (Ribosomal protein L16), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf04686g00024.1	AT1G09720.1	***-	Kinase interacting (KIP1-like) family protein LENGTH=928	IPR011684 (KIP1-like)	
Niben101Scf02595g05004.1	AT4G24460.1	*-*-	CRT (chloroquine-resistance transporter)-like transporter 2 LENGTH=431		
Niben101Scf00016g01010.1	sp|G3X9R7|RN148_MOUSE	*-*-	RING finger protein 148	IPR003137 (Protease-associated domain, PA), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00504g03003.1	sp|Q96HR8|NAF1_HUMAN	*-*-	H/ACA ribonucleoprotein complex non-core subunit NAF1	IPR007504 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1), IPR009000 (Translation protein, beta-barrel domain)	GO:0001522 (pseudouridine synthesis), GO:0042254 (ribosome biogenesis)
Niben101Scf08351g06010.1	sp|P59932|SSB_RHOBA	*-**	Single-stranded DNA-binding protein	IPR000424 (Primosome PriB/single-strand DNA-binding)	GO:0003697 (single-stranded DNA binding), GO:0006260 (DNA replication)
Niben101Scf05211g01004.1	sp|Q6FTI0|TVP38_CANGA	-**-	Golgi apparatus membrane protein TVP38		
Niben101Scf16833g00005.1	AT5G05080.1	***-	ubiquitin-conjugating enzyme 22 LENGTH=251	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf08419g01005.1	sp|A3DE07|PYRC_CLOTH	***-	Dihydroorotase	IPR006680 (Amidohydrolase 1), IPR011059 (Metal-dependent hydrolase, composite domain)	GO:0016787 (hydrolase activity), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf00887g05014.1	gb|AGV75925.1|	--*-	CFE protein [Gossypium barbadense]		
Niben101Scf04910g00001.1	AT5G20820.1	***-	SAUR-like auxin-responsive protein family LENGTH=127	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf07578g00004.1	sp|Q41001|BCP_PEA	*-*-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf03432g00002.1	ref|XP_007012029.1|	*-*-	Bromo-adjacent domain-containing protein, putative isoform 1 [Theobroma cacao] gb|EOY29648.1| Bromo-adjacent domain-containing protein, putative isoform 1 [Theobroma cacao]		
Niben101Scf04860g04009.1	sp|Q6MHJ5|PIF1_BDEBA	--**	ATP-dependent DNA helicase pif1	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf06570g03023.1			Unknown protein		
Niben101Scf03133g00007.1	ref|XP_007018106.1|	***-	Localized to the inner membrane of the chloroplast [Theobroma cacao] gb|EOY15331.1| Localized to the inner membrane of the chloroplast [Theobroma cacao]		
Niben101Scf12277g01001.1	sp|P00243|FER_SYNY4	***-	Ferredoxin	IPR010241 (Ferredoxin [2Fe-2S], plant), IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0022900 (electron transport chain), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf35572g01005.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00650g02015.1	sp|O22715|AP1M2_ARATH	****	AP-1 complex subunit mu-2	IPR001392 (Clathrin adaptor, mu subunit), IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf07030g02002.1	ref|NP_849739.1|	*-**	inactive poly [ADP-rib [Arabidopsis thaliana] gb|AEE31453.1| inactive poly [ADP-ribose] polymerase RCD1 [Arabidopsis thaliana]	IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR022003 (RST domain of plant C-terminal)	GO:0003950 (NAD+ ADP-ribosyltransferase activity)
Niben101Scf08680g02003.1	sp|Q9FLZ8|EDL2_ARATH	***-	EID1-like F-box protein 2	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00338g03020.1			Unknown protein		
Niben101Scf01482g02012.1			Unknown protein		
Niben101Scf01346g01021.1	sp|Q96NW7|LRRC7_HUMAN	*-*-	Leucine-rich repeat-containing protein 7	IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	
Niben101Scf10613g00008.1	sp|Q9FWA3|6GPD3_ARATH	****	6-phosphogluconate dehydrogenase, decarboxylating 3	IPR006113 (6-phosphogluconate dehydrogenase, decarboxylating), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050661 (NADP binding), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01694g12011.1	AT2G29670.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=536	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08422g01007.1	AT1G28320.1	*-*-	protease-related LENGTH=709	IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity)
Niben101Scf10338g00010.1	sp|P34091|RL6_MESCR	***-	60S ribosomal protein L6	IPR000915 (60S ribosomal protein L6E), IPR005568 (Ribosomal protein L6, N-terminal), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10465g01003.1	sp|Q55FS2|STK4L_DICDI	*-**	Serine/threonine-protein kinase 4 homolog B	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00457g02012.1	sp|Q2KIG2|WDR5_BOVIN	*-*-	WD repeat-containing protein 5	IPR007148 (Small-subunit processome, Utp12), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf05078g08013.1	sp|Q8LFJ9|GLIP7_ARATH	***-	GDSL esterase/lipase 7	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf06249g05016.1	sp|P27521|CA4_ARATH	***-	Chlorophyll a-b binding protein 4, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf01818g08009.1	sp|Q6BQJ1|TVP38_DEBHA	--*-	Golgi apparatus membrane protein TVP38		
Niben101Scf00297g00010.1	sp|Q6FRB7|IPYR_CANGA	****	Inorganic pyrophosphatase	IPR008162 (Inorganic pyrophosphatase)	GO:0000287 (magnesium ion binding), GO:0004427 (inorganic diphosphatase activity), GO:0005737 (cytoplasm), GO:0006796 (phosphate-containing compound metabolic process)
Niben101Scf02256g00009.1	sp|P19963|ALL1_OLEEU	***-	Major pollen allergen Ole e 1	IPR006041 (Pollen Ole e 1 allergen/extensin)	GO:0005615 (extracellular space)
Niben101Scf04175g00018.1	sp|P50846|ALKH_BACSU	--*-	KHG/KDPG aldolase	IPR000887 (KDPG/KHG aldolase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016829 (lyase activity)
Niben101Scf03602g01004.1	AT2G16370.1	****	thymidylate synthase 1 LENGTH=519	IPR000398 (Thymidylate synthase), IPR012262 (Bifunctional dihydrofolate reductase/thymidylate synthase), IPR023451 (Thymidylate synthase/dCMP hydroxymethylase domain), IPR024072 (Dihydrofolate reductase-like domain)	GO:0004146 (dihydrofolate reductase activity), GO:0004799 (thymidylate synthase activity), GO:0006231 (dTMP biosynthetic process), GO:0006545 (glycine biosynthetic process), GO:0006730 (one-carbon metabolic process), GO:0009165 (nucleotide biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf03710g10004.1	sp|Q39134|AAP3_ARATH	***-	Amino acid permease 3	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf02877g00005.1	sp|Q6DR10|TBL43_ARATH	*-*-	Protein trichome birefringence-like 43	IPR025846 (PMR5 N-terminal domain), IPR029962 (Trichome birefringence-like family)	
Niben101Scf04610g06007.1	AT5G42765.1	***-	INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;		
Niben101Scf02972g03007.1	AT5G42050.1	*-*-	DCD (Development and Cell Death) domain protein LENGTH=349	IPR013989 (Development/cell death domain)	
Niben101Scf16439g00013.1			Unknown protein	IPR018289 (MULE transposase domain)	
Niben101Scf11491g01015.1	sp|Q5M7C8|HORM1_XENLA	*-*-	HORMA domain-containing protein 1	IPR003511 (DNA-binding HORMA)	
Niben101Scf00343g05008.1	AT1G22610.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1029	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf13679g01005.1	sp|Q73M14|GPMA_TREDE	****	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0004619 (phosphoglycerate mutase activity), GO:0006096 (glycolytic process), GO:0008152 (metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf12628g01005.1	AT2G25910.2	****	3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein LENGTH=342	IPR004087 (K Homology domain), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf04979g01006.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf13002g03023.1	AT2G41970.1	****	Protein kinase superfamily protein LENGTH=365	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00381g08009.1	AT2G42005.1	***-	Transmembrane amino acid transporter family protein LENGTH=413	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf11773g01003.1	sp|Q84TE6|NAC22_ARATH	*-*-	NAC domain-containing protein 21/22	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01520g08012.1	sp|P0CQ77|DBP2_CRYNB	--*-	ATP-dependent RNA helicase DBP2-A	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03036g07022.1	ref|XP_010105201.1|	--*-	Sn1-specific diacylglycerol lipase beta [Morus notabilis] gb|EXC04055.1| Sn1-specific diacylglycerol lipase beta [Morus notabilis]		
Niben101Scf00461g02005.1	AT4G29660.1	***-	embryo defective 2752 LENGTH=103		
Niben101Ctg14924g00004.1	sp|Q8LPL2|PTR32_ARATH	*-*-	Protein NRT1/ PTR FAMILY 1.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00633g02003.1	sp|Q9SAF0|ORP1D_ARATH	*-*-	Oxysterol-binding protein-related protein 1D	IPR000648 (Oxysterol-binding protein), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf06671g03019.1	sp|Q5NCF2|TPPC1_MOUSE	***-	Trafficking protein particle complex subunit 1	IPR007233 (Sybindin-like protein)	GO:0005801 (cis-Golgi network), GO:0006810 (transport), GO:0006888 (ER to Golgi vesicle-mediated transport)
Niben101Scf05875g00015.1	sp|O64515|OCT2_ARATH	*-**	Organic cation/carnitine transporter 2	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01084g01008.1	sp|Q01996|TBP1_NEIGO	--*-	Transferrin-binding protein 1		
Niben101Scf02746g05006.1			Unknown protein		
Niben101Scf04662g00003.1	ref|XP_007029644.1|	***-	Plasma membrane isoform 4 [Theobroma cacao] gb|EOY10146.1| Plasma membrane isoform 4 [Theobroma cacao]	IPR011528 (Nuclease-related domain, NERD)	
Niben101Scf11178g02003.1	sp|Q05A36|MEX3C_MOUSE	--**	RNA-binding E3 ubiquitin-protein ligase MEX3C	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04279g02001.1	AT4G27130.1	*-**	Translation initiation factor SUI1 family protein LENGTH=113	IPR001950 (Translation initiation factor SUI1)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf03764g05013.1	sp|Q5BIY5|RN145_XENLA	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf14958g00031.1	sp|A5VPV8|FABH_BRUO2	****	3-oxoacyl-[acyl-carrier-protein] synthase 3	IPR004655 (3-oxoacyl-[acyl-carrier-protein] synthase 3)	GO:0003824 (catalytic activity), GO:0004315 (3-oxoacyl-[acyl-carrier-protein] synthase activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03444g03018.1	AT5G55850.2	*-*-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=130	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf03634g09008.1	sp|A7ZPX0|HSCB_ECO24	*-**	Co-chaperone protein HscB	IPR004640 (Co-chaperone Hsc20)	GO:0006457 (protein folding), GO:0051087 (chaperone binding), GO:0051259 (protein oligomerization)
Niben101Scf05108g04009.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00044g00016.1	AT5G07990.1	*-*-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05201g07006.1	sp|Q9STF0|LRKS3_ARATH	****	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02749g05038.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf00130g01018.1			Unknown protein		
Niben101Scf00436g03006.1	sp|Q42572|DNLI1_ARATH	****	DNA ligase 1	IPR012308 (DNA ligase, ATP-dependent, N-terminal), IPR012310 (DNA ligase, ATP-dependent, central), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003677 (DNA binding), GO:0003909 (DNA ligase activity), GO:0003910 (DNA ligase (ATP) activity), GO:0005524 (ATP binding), GO:0006281 (DNA repair), GO:0006310 (DNA recombination), GO:0051103 (DNA ligation involved in DNA repair)
Niben101Scf02082g00009.1			Unknown protein		
Niben101Scf07829g01014.1	sp|P35336|PGLR_ACTDE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02413g00001.1			Unknown protein		
Niben101Scf13525g00017.1	AT3G55640.1	***-	Mitochondrial substrate carrier family protein LENGTH=332	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf20887g00019.1	AT2G30460.1	***-	Nucleotide/sugar transporter family protein LENGTH=353		
Niben101Scf05712g00005.1	sp|Q42510|GNOM_ARATH	****	ARF guanine-nucleotide exchange factor GNOM	IPR000904 (Sec7 domain), IPR023394 (Sec7 domain, alpha orthogonal bundle)	GO:0005086 (ARF guanyl-nucleotide exchange factor activity), GO:0032012 (regulation of ARF protein signal transduction)
Niben101Scf03374g06004.1	AT1G79740.1	***-	hAT transposon superfamily LENGTH=651	IPR003656 (Zinc finger, BED-type), IPR007021 (Domain of unknown function DUF659), IPR008906 (HAT dimerisation domain, C-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf09372g03012.1	AT1G67140.3	***-	HEAT repeat-containing protein LENGTH=2223	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04436g13014.1	AT3G07480.1	***-	2Fe-2S ferredoxin-like superfamily protein LENGTH=159	IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf03129g06003.1	emb|CDY70231.1|	***-	BnaAnng33040D [Brassica napus]	IPR007650 (Zf-FLZ domain)	
Niben101Scf28230g00015.1	AT3G23710.1	***-	Tic22-like family protein LENGTH=313	IPR007378 (Tic22-like)	
Niben101Scf05349g00005.1	gb|AFW90556.1|	***-	fiber protein Fb15 [Solanum tuberosum]		
Niben101Scf05078g06007.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04010g01005.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08249g00001.1	AT1G22400.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf09343g01023.1	AT4G27100.1	*-*-	Ypt/Rab-GAP domain of gyp1p superfamily protein LENGTH=436		
Niben101Scf01208g01004.1	sp|Q9PKU9|MALQ_CHLMU	*-**	4-alpha-glucanotransferase	IPR003385 (Glycoside hydrolase, family 77), IPR017853 (Glycoside hydrolase superfamily)	GO:0004134 (4-alpha-glucanotransferase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01497g01003.1	sp|Q10Q08|RFA1B_ORYSJ	*-*-	Replication protein A 70 kDa DNA-binding subunit B	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf01308g00002.1	AT3G15050.1	***-	IQ-domain 10 LENGTH=259	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf01256g00011.1	sp|Q9D7H2|WDR5B_MOUSE	--*-	WD repeat-containing protein 5B	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00973g00010.1	AT3G45540.1	****	RING/U-box protein with C6HC-type zinc finger LENGTH=348	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf00302g02011.1	sp|P81748|MIFH_TRITR	***-	Macrophage migration inhibitory factor homolog	IPR001398 (Macrophage migration inhibitory factor), IPR014347 (Tautomerase/MIF superfamily)	
Niben101Scf08681g00003.1	sp|A2YS06|ATG8C_ORYSI	***-	Autophagy-related protein 8C	IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain)	
Niben101Scf03099g00001.1	sp|Q9ZUI6|AP1G2_ARATH	****	AP-1 complex subunit gamma-2	IPR013041 (Coatomer/clathrin adaptor appendage, Ig-like subdomain), IPR016024 (Armadillo-type fold), IPR017107 (Adaptor protein complex AP-1, gamma subunit)	GO:0005488 (binding), GO:0005794 (Golgi apparatus), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030131 (clathrin adaptor complex)
Niben101Scf02050g01029.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00621g04005.1	gb|AES64309.2|	***-	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf15496g00008.1	emb|CDY12406.1|	***-	BnaC08g08950D [Brassica napus]	IPR007650 (Zf-FLZ domain)	
Niben101Scf11778g01008.1	gb|KEH27134.1|	*-*-	adenine nucleotide alpha hydrolase superfamily protein [Medicago truncatula]		
Niben101Scf11495g01007.1			Unknown protein		
Niben101Scf11361g01013.1	AT2G45260.1	***-	Plant protein of unknown function (DUF641) LENGTH=425	IPR006943 (Domain of unknown function DUF641, plant)	
Niben101Scf03810g09002.1			Unknown protein		
Niben101Scf04300g06008.1	AT1G03390.1	****	HXXXD-type acyl-transferase family protein LENGTH=461	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04231g00003.1	sp|Q6EM87|RR7_HYDMC	*-*-	30S ribosomal protein S7, chloroplastic	IPR000235 (Ribosomal protein S5/S7), IPR023798 (Ribosomal protein S7 domain)	GO:0006412 (translation)
Niben101Scf03062g02017.1	sp|P20144|WUN1_SOLTU	*-*-	Wound-induced protein 1	IPR009798 (Wound-induced protein, Wun1)	
Niben101Scf12372g01014.1	sp|Q3SX11|NSA2_BOVIN	*-*-	Ribosome biogenesis protein NSA2 homolog		
Niben101Scf03227g05015.1	AT5G17790.1	****	zinc finger (Ran-binding) family protein LENGTH=758	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf02194g00010.1	ref|XP_003588439.1|	*-*-	F-box protein [Medicago truncatula]	IPR005174 (Protein of unknown function DUF295)	
Niben101Scf29501g00005.1	AT3G08570.1	***-	Phototropic-responsive NPH3 family protein LENGTH=617	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf01981g00002.1	ref|WP_016786451.1|	-**-	Nex18 symbiotically induced protein [Vibrio cyclitrophicus]	IPR000782 (FAS1 domain)	
Niben101Scf19454g00004.1	sp|Q84WM9|EF1B1_ARATH	****	Elongation factor 1-beta 1	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR014717 (Translation elongation factor EF1B/ribosomal protein S6)	GO:0003746 (translation elongation factor activity), GO:0005853 (eukaryotic translation elongation factor 1 complex), GO:0006414 (translational elongation)
Niben101Scf04159g01003.1			Unknown protein		
Niben101Scf04011g07006.1	AT4G00800.1	***-	transducin family protein / WD-40 repeat family protein LENGTH=1913	IPR000547 (Clathrin, heavy chain/VPS, 7-fold repeat), IPR001841 (Zinc finger, RING-type), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR025941 (Vacuolar protein sorting-associated protein 8, central domain)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0008270 (zinc ion binding), GO:0016192 (vesicle-mediated transport)
Niben101Scf02968g02019.1	sp|Q8RW96|2A5G_ARATH	****	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf03791g00009.1	sp|Q84W80|FBL42_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01073g04006.1			Unknown protein		
Niben101Scf10441g01005.1	sp|Q9LZQ1|TBL6_ARATH	***-	Protein trichome birefringence-like 6	IPR026057 (PC-Esterase)	
Niben101Scf21586g00007.1	sp|Q7MH54|RRAA_VIBVY	****	Regulator of ribonuclease activity A	IPR005493 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase), IPR010203 (Regulator of ribonuclease activity A)	GO:0008428 (ribonuclease inhibitor activity), GO:0051252 (regulation of RNA metabolic process)
Niben101Scf05711g04002.1	sp|Q3T0N3|TMCO1_BOVIN	***-	Transmembrane and coiled-coil domain-containing protein 1	IPR002809 (Protein of unknown function DUF106, transmembrane)	GO:0016020 (membrane)
Niben101Scf01146g10001.1	AT1G04780.1	*-*-	Ankyrin repeat family protein LENGTH=664	IPR021832 (Ankyrin repeat domain-containing protein 13)	
Niben101Scf01927g04006.1	sp|P91406|GCP2_CAEEL	***-	Glutamate carboxypeptidase 2 homolog	IPR003137 (Protease-associated domain, PA)	
Niben101Scf01227g04015.1	dbj|BAH57022.1|	*-*-	[Arabidopsis thaliana]		
Niben101Scf04724g03004.1	ref|XP_002532684.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29697.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01539g00001.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf22015g02047.1	AT5G64130.3	***-	cAMP-regulated phosphoprotein 19-related protein LENGTH=140	IPR006760 (Endosulphine)	
Niben101Ctg14797g00001.1	AT3G60260.1	*-*-	ELMO/CED-12 family protein LENGTH=266		
Niben101Scf04316g10012.1	emb|CDY26231.1|	***-	BnaA06g11860D [Brassica napus]		
Niben101Scf00222g00006.1	sp|Q8W207|CSN2_ARATH	***-	COP9 signalosome complex subunit 2	IPR000717 (Proteasome component (PCI) domain), IPR011990 (Tetratricopeptide-like helical domain), IPR013143 (PCI/PINT associated module)	GO:0005515 (protein binding)
Niben101Scf07278g01002.1	AT2G15570.2	***-	Thioredoxin superfamily protein LENGTH=174	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf07194g00009.1	sp|A9BD24|TRPB_PROM4	*-*-	Tryptophan synthase beta chain	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme)	
Niben101Scf00773g09003.1	ref|WP_028378491.1|	--*-	beta-lactamase [Legionella pneumophila]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06861g00001.1	sp|Q0ABF8|RS5_ALKEH	*-*-	30S ribosomal protein S5	IPR000851 (Ribosomal protein S5), IPR014720 (Double-stranded RNA-binding domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf13404g00002.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01413g00009.1	sp|Q08E38|PRP19_BOVIN	*-*-	Pre-mRNA-processing factor 19	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03365g00008.1	sp|Q9SK66|NDUA9_ARATH	***-	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	IPR016040 (NAD(P)-binding domain)	
Niben101Scf00817g03007.1	sp|P16379|L_VSNJO	--*-	RNA-directed RNA polymerase L		
Niben101Scf03326g02002.1	sp|A8E5V7|NAA60_XENTR	****	N-alpha-acetyltransferase 60	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf00821g00003.1	sp|Q8RU27|UPTG2_SOLTU	***-	Alpha-1,4-glucan-protein synthase [UDP-forming] 2	IPR004901 (Reversibly glycosylated polypeptide family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016866 (intramolecular transferase activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf08812g05006.1	emb|CDY65979.1|	--*-	BnaCnng49210D [Brassica napus]		
Niben101Scf00069g04016.1	AT2G22690.1	****	zinc ion binding LENGTH=381	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013144 (CRA domain), IPR024964 (CTLH/CRA C-terminal to LisH motif domain), IPR027370 (RING-type zinc-finger, LisH dimerisation motif), IPR027711 (Rmd5)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00408g09007.1	sp|P49692|RL7A1_ARATH	***-	60S ribosomal protein L7a-1	IPR018492 (Ribosomal protein L7Ae/L8/Nhp2 family), IPR029064 (50S ribosomal protein L30e-like)	GO:0030529 (ribonucleoprotein complex), GO:0042254 (ribosome biogenesis)
Niben101Scf05955g02011.1	gb|AAT46619.1|	-**-	hepatocellular carcinoma-associated antigen 59 [Homo sapiens]	IPR010756 (Hepatocellular carcinoma-associated antigen 59)	
Niben101Scf02929g05022.1	sp|Q2PMM5|YCF2_SOYBN	*-*-	Protein Ycf2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00693g02022.1	sp|Q1CZI7|HTPG_MYXXD	*-*-	Chaperone protein HtpG	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf07182g04018.1			Unknown protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf09099g00026.1			Unknown protein		
Niben101Scf00048g00007.1	emb|CDY08510.1|	***-	BnaA05g27460D [Brassica napus]		
Niben101Scf08588g00016.1	sp|P24922|IF5A2_NICPL	****	Eukaryotic translation initiation factor 5A-2	IPR001884 (Translation elongation factor IF5A)	GO:0003723 (RNA binding), GO:0003746 (translation elongation factor activity), GO:0006452 (translational frameshifting), GO:0043022 (ribosome binding), GO:0045901 (positive regulation of translational elongation), GO:0045905 (positive regulation of translational termination)
Niben101Scf00982g04003.1	sp|Q9STT2|VPS29_ARATH	***-	Vacuolar protein sorting-associated protein 29	IPR000979 (Phosphodiesterase MJ0936/Vps29), IPR029052 (Metallo-dependent phosphatase-like)	GO:0030904 (retromer complex), GO:0042147 (retrograde transport, endosome to Golgi)
Niben101Scf00144g02016.1	AT3G11560.2	*-*-	LETM1-like protein LENGTH=872	IPR011685 (LETM1-like)	
Niben101Scf07163g01001.1	sp|Q9SEE4|PIRL_SOLLC	***-	Pirin-like protein	IPR012093 (Pirin), IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf04398g06021.1	sp|Q6AWY6|GRF3_ORYSJ	*-*-	Growth-regulating factor 3		
Niben101Scf06094g02011.1	sp|A0LR74|FTSH_ACIC1	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf03985g04021.1	AT5G41800.1	***-	Transmembrane amino acid transporter family protein LENGTH=452	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf07863g00015.1	sp|Q6YZM6|BBD2_ORYSJ	****	Bifunctional nuclease 2	IPR003729 (Bifunctional nuclease domain)	GO:0004518 (nuclease activity)
Niben101Scf00863g00005.1	emb|CDY53602.1|	--*-	BnaC09g51900D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf02803g04012.1	AT3G54880.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=112	IPR025124 (Domain of unknown function DUF4050)	
Niben101Scf00381g08004.1	sp|Q2IXS8|RL11_RHOP2	***-	50S ribosomal protein L11	IPR000911 (Ribosomal protein L11/L12)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09079g02013.1	AT4G30440.1	***-	UDP-D-glucuronate 4-epimerase 1 LENGTH=429	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf00593g03012.1	sp|Q9FM19|HIR1_ARATH	***-	Hypersensitive-induced response protein 1	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf00120g02005.1	ref|XP_007025678.1|	--*-	Clathrin light chain protein isoform 2 [Theobroma cacao] gb|EOY28300.1| Clathrin light chain protein isoform 2 [Theobroma cacao]		
Niben101Scf02837g07020.1	sp|Q8H3P9|HAK7_ORYSJ	*-**	Potassium transporter 7	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf12321g01020.1	ref|WP_027496581.1|	--*-	cyclopropane-fatty-acyl-phospholipid synthase [Rhodococcus sp. JG-3]	IPR003333 (Mycolic acid cyclopropane synthase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008610 (lipid biosynthetic process)
Niben101Scf09846g02023.1	sp|Q9FJU9|E1313_ARATH	***-	Glucan endo-1,3-beta-glucosidase 13	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02909g02010.1	AT1G50920.1	****	Nucleolar GTP-binding protein LENGTH=671	IPR006073 (GTP binding domain), IPR010674 (Nucleolar GTP-binding protein 1, Rossman-fold domain), IPR012973 (NOG, C-terminal), IPR024926 (Nucleolar GTP-binding protein 1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005730 (nucleolus)
Niben101Scf01046g04004.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf02540g01012.1	sp|Q8BR70|YIPF6_MOUSE	--*-	Protein YIPF6	IPR006977 (Yip1 domain)	GO:0016020 (membrane)
Niben101Scf04114g02037.1	gb|ACM46775.1|	*-*-	matR [Abies sibirica]	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf02790g03008.1	AT1G03920.1	****	Protein kinase family protein LENGTH=569	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08333g07016.1	sp|Q8K2Z4|CND1_MOUSE	*-*-	Condensin complex subunit 1	IPR016024 (Armadillo-type fold), IPR026003 (HEAT repeat associated with sister chromatid cohesion protein), IPR026971 (Condensin subunit 1/Condensin-2 complex subunit D3)	GO:0005488 (binding), GO:0007076 (mitotic chromosome condensation)
Niben101Scf02982g03002.1	sp|Q14152|EIF3A_HUMAN	--*-	Eukaryotic translation initiation factor 3 subunit A		
Niben101Scf32526g00010.1	AT5G23390.1	***-	Plant protein of unknown function (DUF639) LENGTH=730	IPR006927 (Protein of unknown function DUF639)	
Niben101Scf05063g04001.1	AT2G06010.1	***-	OBP3-responsive gene 4 LENGTH=188		
Niben101Scf03171g01009.1	sp|Q6BVN0|PMP3_DEBHA	-***	Plasma membrane proteolipid 3	IPR000612 (Proteolipid membrane potential modulator)	GO:0016021 (integral component of membrane)
Niben101Scf01252g04009.1	sp|Q9C9S4|TPPB_ARATH	****	Trehalose-phosphate phosphatase B	IPR003337 (Trehalose-phosphatase), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process)
Niben101Scf36598g00003.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03154g00004.1	gb|KEH30367.1|	*-*-	structural constituent of ribosome protein [Medicago truncatula]		
Niben101Scf03267g00048.1	gb|AGL75389.1|	--*-	ATPase subunit 8 (mitochondrion) [Utricularia gibba]	IPR003319 (ATP synthase YMF19-like, N-terminal)	
Niben101Scf01269g09004.1	AT4G26965.1	****	NADH:ubiquinone oxidoreductase, 17.2kDa subunit LENGTH=184	IPR007763 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0009055 (electron carrier activity), GO:0016020 (membrane)
Niben101Scf10144g00007.1	sp|Q8T277|PRKAG_DICDI	***-	5'-AMP-activated protein kinase subunit gamma	IPR000644 (CBS domain), IPR014756 (Immunoglobulin E-set)	
Niben101Scf03072g06005.1	sp|O49929|OEP24_PEA	***-	Outer envelope pore protein 24, chloroplastic		
Niben101Scf09092g00001.1	ref|XP_003588352.1|	*-*-	NADH dehydrogenase subunit [Medicago truncatula]		
Niben101Scf08647g00002.1	AT2G42005.1	***-	Transmembrane amino acid transporter family protein LENGTH=413	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf02280g09005.1	sp|Q87UX4|F16PA_PSESM	****	Fructose-1,6-bisphosphatase class 1	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Ctg04298g00001.1	ref|WP_016716765.1|	--*-	alpha/beta hydrolase [Bacillus cereus]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf08148g00001.1			Unknown protein		
Niben101Scf07682g00001.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01290g01009.1	sp|P05116|ACCO1_SOLLC	***-	1-aminocyclopropane-1-carboxylate oxidase 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf05669g00004.1	sp|O14466|DPM1_SCHPO	***-	Dolichol-phosphate mannosyltransferase	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf06923g00005.1	emb|CDY42941.1|	*-*-	BnaA01g18130D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf05542g00010.1	AT5G10270.1	*-**	cyclin-dependent kinase C;1 LENGTH=505	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03944g05009.1	sp|Q53MB8|TLPH_ORYSJ	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf05186g00004.1	gb|ABB83644.1|	--*-	PIF-like transposase [Daucus carota]		
Niben101Scf02646g03002.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10966g03004.1	sp|Q9C9S4|TPPB_ARATH	****	Trehalose-phosphate phosphatase B	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf06627g00004.1	ref|XP_003606544.1|	*-**	Fringe-like protein [Medicago truncatula] gb|AES88741.1| transferring glycosyl group transferase [Medicago truncatula]	IPR003378 (Fringe-like)	GO:0016020 (membrane), GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf02816g02004.1	ref|XP_003620812.1|	--*-	Pentatricopeptide repeat-containing protein [Medicago truncatula]		
Niben101Scf03295g07006.1	sp|P0CC54|NU2C1_DAUCA	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic		
Niben101Scf10188g03003.1			Unknown protein		
Niben101Scf10363g00006.1	emb|CDY27712.1|	***-	BnaA05g31210D [Brassica napus]		
Niben101Scf13029g03024.1	sp|Q9SVP7|PP307_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00021g01019.1	sp|Q9FJH8|NRT24_ARATH	*-*-	High affinity nitrate transporter 2.4		
Niben101Scf03444g03012.1	sp|Q8N5M1|ATPF2_HUMAN	****	ATP synthase mitochondrial F1 complex assembly factor 2	IPR011419 (ATP12, ATPase F1F0-assembly protein), IPR023335 (Orthogonal Bundle domain in ATP12)	GO:0043461 (proton-transporting ATP synthase complex assembly)
Niben101Scf08141g01009.1	AT1G29500.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02225g02002.1	gb|ACV41069.1|	***-	self-incompatibility protein [Platystemon californicus]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf03766g14002.1			Unknown protein		
Niben101Scf04212g00016.1	sp|Q7S7Z6|PPIB_NEUCR	*-**	Peptidyl-prolyl cis-trans isomerase B	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf03405g04010.1			Unknown protein		
Niben101Scf06465g04001.1	gb|AAW28576.2|	--*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf02471g01007.1	sp|Q54YW1|ELMOA_DICDI	*-*-	ELMO domain-containing protein A	IPR006816 (Engulfment/cell motility, ELMO)	GO:0005856 (cytoskeleton), GO:0006909 (phagocytosis)
Niben101Scf02602g00002.1	AT3G15355.1	*-*-	ubiquitin-conjugating enzyme 25 LENGTH=609	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf30743g00001.1	gb|AAT39304.2|	--*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf01063g05026.1	sp|Q9C9U0|PP118_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02517g00006.1			Unknown protein		
Niben101Scf16773g02008.1			Unknown protein		
Niben101Scf00812g00009.1	sp|Q0AXH2|DAPB_SYNWW	****	4-hydroxy-tetrahydrodipicolinate reductase	IPR011770 (Dihydrodipicolinate reductase, bacterial/plant)	GO:0008839 (4-hydroxy-tetrahydrodipicolinate reductase), GO:0009089 (lysine biosynthetic process via diaminopimelate), GO:0055114 (oxidation-reduction process), GO:0070402 (NADPH binding)
Niben101Scf04657g03010.1	AT3G19610.1	*-*-	Plant protein of unknown function (DUF936) LENGTH=640	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Scf15579g00016.1	sp|Q40585|VATL_TOBAC	****	V-type proton ATPase 16 kDa proteolipid subunit	IPR000245 (V-ATPase proteolipid subunit), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf10810g01009.1	AT2G04540.1	*-*-	Beta-ketoacyl synthase LENGTH=461	IPR017568 (3-oxoacyl-[acyl-carrier-protein] synthase 2), IPR020841 (Polyketide synthase, beta-ketoacyl synthase domain)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf31945g00007.1	emb|CDY38584.1|	***-	BnaC06g30070D [Brassica napus]		
Niben101Scf02132g02012.1	gb|KEH24987.1|	****	2-aminoethanethiol dioxygenase-like protein [Medicago truncatula]	IPR012864 (Cysteamine dioxygenase), IPR014710 (RmlC-like jelly roll fold)	GO:0047800 (cysteamine dioxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01524g00005.1	AT4G00880.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=122	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf04430g02005.1	ref|XP_003589307.1|	--*-	F-box/FBD/LRR-repeat protein [Medicago truncatula]		
Niben101Scf25737g00001.1	sp|Q8R2P1|KLH25_MOUSE	*-*-	Kelch-like protein 25	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf00152g03012.1	ref|XP_007017698.1|	*-*-	Chaperone DnaJ-domain superfamily protein isoform 3 [Theobroma cacao] gb|EOY14923.1| Chaperone DnaJ-domain superfamily protein isoform 3 [Theobroma cacao]		
Niben101Scf02637g04002.1	sp|Q9FY79|LAC14_ARATH	***-	Laccase-14	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00276g05006.1	ref|XP_002514048.1|	--*-	DNA binding protein, putative [Ricinus communis] gb|EEF48631.1| DNA binding protein, putative [Ricinus communis]		
Niben101Scf15972g00007.1	AT5G07980.1	*-*-	dentin sialophosphoprotein-related LENGTH=1501		
Niben101Scf09248g03001.1	sp|Q9LFC5|PP360_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01025g10007.1	sp|O80932|EXPA3_ARATH	***-	Expansin-A3	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf10678g00017.1	sp|Q4KE22|METE_PSEF5	*-**	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	IPR013215 (Cobalamin-independent methionine synthase MetE, N-terminal)	GO:0003871 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity), GO:0008270 (zinc ion binding), GO:0008652 (cellular amino acid biosynthetic process)
Niben101Scf04558g02001.1	sp|Q9ZVD0|SRRT_ARATH	***-	Serrate RNA effector molecule	IPR007042 (Arsenite-resistance protein 2), IPR021933 (Protein of unknown function DUF3546)	GO:0046872 (metal ion binding)
Niben101Scf04184g02002.1	dbj|BAF02599.1|	*-*-	RNA ligase isoform 2 [Triticum aestivum]		
Niben101Scf00419g08004.1			Unknown protein		
Niben101Scf04011g06018.1	sp|Q9XEK8|RL23_TORRU	***-	60S ribosomal protein L23	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf17485g00001.1			Unknown protein		
Niben101Scf01182g07006.1	AT4G35160.1	****	O-methyltransferase family protein LENGTH=382	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf04019g03001.1	ref|XP_007014255.1|	*-*-	Replication protein A, subunit RPA32, putative isoform 4 [Theobroma cacao] gb|EOY31874.1| Replication protein A, subunit RPA32, putative isoform 4 [Theobroma cacao]		
Niben101Scf00135g00017.1	emb|CDX86876.1|	***-	BnaA09g22660D [Brassica napus]		
Niben101Scf02527g01017.1	ref|XP_007015162.1|	*-*-	DNA binding,zinc ion binding,DNA binding, putative isoform 2 [Theobroma cacao] gb|EOY32781.1| DNA binding,zinc ion binding,DNA binding, putative isoform 2 [Theobroma cacao]		
Niben101Scf06042g00001.1	sp|Q6DBY2|NAA50_DANRE	--**	N-alpha-acetyltransferase 50	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf03953g02014.1	sp|P0CC98|NU2C1_TOBAC	--*-	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic		
Niben101Scf04722g04015.1	sp|O80443|GDL46_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02437g00010.1	sp|Q33C48|RPOC2_NICTO	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf03291g02014.1	gb|ABF95572.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf01998g03010.1	sp|O27131|EF2_METTH	***-	Elongation factor 2	IPR000640 (Translation elongation factor EFG, V domain), IPR000795 (Elongation factor, GTP-binding domain), IPR005225 (Small GTP-binding protein domain), IPR009000 (Translation protein, beta-barrel domain), IPR009022 (Elongation factor G, III-V domain), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf05250g02012.1	sp|Q67A25|NCS_THLFG	***-	S-norcoclaurine synthase	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf10636g00008.1	sp|Q9SW09|RS101_ARATH	***-	40S ribosomal protein S10-1	IPR005326 (Plectin/S10, N-terminal)	
Niben101Scf00988g01008.1	sp|C3MZB8|RL11_SULIA	***-	50S ribosomal protein L11	IPR000911 (Ribosomal protein L11/L12)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00637g04001.1	AT5G06860.1	***-	polygalacturonase inhibiting protein 1 LENGTH=330	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf04322g00001.1	sp|Q9SDQ4|GLR37_ARATH	****	Glutamate receptor 3.7	IPR017103 (Ionotropic glutamate receptor, plant), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf00350g03011.1	sp|E1U332|ALL12_OLEEU	*-*-	Isoflavone reductase-like protein		
Niben101Scf08653g05009.1	AT1G18210.1	****	Calcium-binding EF-hand family protein LENGTH=170	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf05841g01011.1	sp|Q8H1D4|DRB4_ARATH	*-*-	Double-stranded RNA-binding protein 4	IPR014720 (Double-stranded RNA-binding domain)	
Niben101Scf34696g00001.1	sp|Q96F25|ALG14_HUMAN	***-	UDP-N-acetylglucosamine transferase subunit ALG14 homolog	IPR013969 (Oligosaccharide biosynthesis protein Alg14-like)	
Niben101Scf01065g05003.1			Unknown protein		
Niben101Scf01322g04023.1	AT3G46490.1	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=330	IPR002283 (Isopenicillin N synthase), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf09115g00014.1	AT3G30390.1	***-	Transmembrane amino acid transporter family protein LENGTH=460	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf02613g02021.1	AT3G27190.1	****	uridine kinase-like 2 LENGTH=483	IPR000764 (Uridine kinase like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029057 (Phosphoribosyltransferase-like)	GO:0004849 (uridine kinase activity), GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0044206 (UMP salvage)
Niben101Scf01870g09015.1	AT5G10080.1	***-	Eukaryotic aspartyl protease family protein LENGTH=528	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00269g00011.1			Unknown protein		
Niben101Scf13988g00008.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf00622g01005.1	sp|Q4U3F7|GAS1_HELAN	--**	Germacrene A synthase 1	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf14274g01003.1	AT4G29310.1	***-	Protein of unknown function (DUF1005) LENGTH=424	IPR010410 (Protein of unknown function DUF1005)	
Niben101Scf02051g01007.1	sp|O95801|TTC4_HUMAN	--*-	Tetratricopeptide repeat protein 4	IPR013026 (Tetratricopeptide repeat-containing domain), IPR023114 (Elongated TPR repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf04319g03002.1	sp|Q7XWU8|EXPA1_ORYSJ	***-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf04028g00002.1	AT2G07749.1	*-*-	Mitovirus RNA-dependent RNA polymerase LENGTH=246	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf10219g00026.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf08979g00005.1	AT4G38840.1	***-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf06509g03006.1	ref|WP_011683167.1|	*-**	glyc [Candidatus Solibacter usitatus Ellin6076] gb|ABJ82392.1| glycosyl transferase, family 2 [Candidatus Solibacter usitatus Ellin6076]	IPR025993 (Ceramide glucosyltransferase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf00176g01001.1	AT1G61870.1	***-	pentatricopeptide repeat 336 LENGTH=408	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain), IPR019135 (Polycomb protein, VEFS-Box)	GO:0005515 (protein binding)
Niben101Scf06435g02017.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf09709g01013.1	sp|Q9MA75|VIP1_ARATH	*-*-	Transcription factor VIP1		
Niben101Scf04436g15037.1	ref|NP_001289448.1|	*-*-	pentatricopeptide repeat-containing protein At1g62910-like [Nicotiana toment [Nicotiana tomentosiformis]		
Niben101Scf26477g00016.1	AT5G10250.1	***-	Phototropic-responsive NPH3 family protein LENGTH=607	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain), IPR029959 (Root phototropism protein 3-like)	GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf07790g02006.1	AT3G10560.1	***-	Cytochrome P450 superfamily protein LENGTH=514	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00465g00008.1			Unknown protein		
Niben101Scf09458g01003.1	AT4G11270.1	*-*-	Transducin/WD40 repeat-like superfamily protein LENGTH=1446	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02886g02004.1	sp|O48818|EXPA4_ARATH	***-	Expansin-A4	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf01918g03003.1	sp|Q9ASZ8|PPR37_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06825g00003.1	sp|Q5M888|CG025_RAT	***-	UPF0415 protein C7orf25 homolog	IPR010733 (Protein of unknown function DUF1308)	
Niben101Scf11245g02001.1	emb|CDY27875.1|	*-*-	BnaA07g04650D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf03804g09002.1	sp|Q90515|TMEDA_TAKRU	***-	Transmembrane emp24 domain-containing protein 10	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf24272g00006.1	sp|P0C8Q7|PP369_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002838 (Mitochondrial biogenesis protein AIM24), IPR002885 (Pentatricopeptide repeat), IPR016031 (Tryptophan RNA-binding attenuator protein-like domain)	
Niben101Scf07242g04006.1	sp|Q0JPA4|CCA12_ORYSJ	****	Cyclin-A1-2	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf02074g06076.1	sp|Q6EW36|PSBE_NYMAL	*-*-	Cytochrome b559 subunit alpha	IPR003372 (Photosystem II PsbL), IPR006217 (Photosystem II cytochrome b559, alpha subunit)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf06698g01004.1	sp|P97377|CDK2_MOUSE	****	Cyclin-dependent kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00735g06022.1	sp|P05117|PGLR_SOLLC	****	Polygalacturonase-2	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00143g02022.1	sp|P38416|LOXB_SOLLC	*-*-	Linoleate 9S-lipoxygenase B	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02798g05010.1	sp|Q9FFD5|RIC4_ARATH	***-	CRIB domain-containing protein RIC4	IPR000095 (CRIB domain)	
Niben101Scf00410g00005.1	sp|Q9FNP2|GDL75_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00585g02016.1	sp|Q6GM29|SAC1_XENLA	****	Phosphatidylinositide phosphatase SAC1	IPR002013 (SAC domain), IPR030069 (Phosphoinositide phosphatase SAC6/7/8)	GO:0042578 (phosphoric ester hydrolase activity), GO:0052866 (phosphatidylinositol phosphate phosphatase activity)
Niben101Ctg15828g00001.1	sp|A0KKI5|RSMF_AERHH	*-**	Ribosomal RNA small subunit methyltransferase F	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf01414g01005.1	AT1G53510.1	****	mitogen-activated protein kinase 18 LENGTH=615	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03445g05005.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04040g01011.1	sp|Q969S3|ZN622_HUMAN	--*-	Zinc finger protein 622		
Niben101Scf03786g01008.1	sp|O48626|ZW10_ARATH	***-	Centromere/kinetochore protein zw10 homolog	IPR009361 (RZZ complex, subunit Zw10)	GO:0000775 (chromosome, centromeric region), GO:0005634 (nucleus), GO:0007067 (mitotic nuclear division)
Niben101Scf05146g04006.1	AT1G73460.1	*-*-	Protein kinase superfamily protein LENGTH=1169		
Niben101Scf01212g01010.1	sp|Q038T2|ERA_LACC3	***-	GTPase Era	IPR005225 (Small GTP-binding protein domain), IPR005662 (GTP-binding protein Era), IPR015946 (K homology domain-like, alpha/beta), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003723 (RNA binding), GO:0005525 (GTP binding), GO:0005622 (intracellular)
Niben101Scf00088g00002.1	sp|P23971|MENE_BACSU	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03038g06012.1	sp|Q9FG71|EMC89_ARATH	***-	ER membrane protein complex subunit 8/9 homolog	IPR005366 (Uncharacterised protein family UPF0172)	
Niben101Scf01759g05007.1	sp|Q04189|TAP1_ANTMA	-**-	Protein TAP1		
Niben101Scf09107g00004.1			Unknown protein		
Niben101Scf05044g04010.1	sp|B2A2Z7|PDXS_NATTJ	*-**	Pyridoxal biosynthesis lyase PdxS	IPR001852 (Pyridoxine biosynthesis protein), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0042823 (pyridoxal phosphate biosynthetic process)
Niben101Scf24567g00007.1	emb|CDX73444.1|	***-	BnaC08g25590D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant), IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf06825g04020.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf06739g01007.1	sp|O81211|RBOHE_ARATH	***-	Respiratory burst oxidase homolog protein E	IPR013121 (Ferric reductase, NAD binding), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02562g00024.1	ref|WP_025880009.1|	***-	MULTISPECIES: hypothetical protein [Prochlorococcus]	IPR004401 (Nucleoid-associated protein YbaB)	
Niben101Scf05804g02005.1	AT5G11430.1	*-*-	SPOC domain / Transcription elongation factor S-II protein LENGTH=873	IPR012921 (Spen paralogue and orthologue SPOC, C-terminal)	
Niben101Scf12266g00001.1	sp|Q6CGL4|APTH1_YARLI	***-	Acyl-protein thioesterase 1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf07623g01031.1	sp|Q5RFJ0|COA5_PONAB	-**-	Cytochrome c oxidase assembly factor 5	IPR018793 (Cytochrome c oxidase assembly protein PET191)	
Niben101Scf00596g01009.1	sp|Q8L5J1|MAN4_SOLLC	*-*-	Mannan endo-1,4-beta-mannosidase 4	IPR017853 (Glycoside hydrolase superfamily)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf03766g01009.1	AT3G27090.1	***-	DCD (Development and Cell Death) domain protein LENGTH=296	IPR013989 (Development/cell death domain)	
Niben101Scf05229g00009.1	sp|Q76NW7|HGH1_DICDI	***-	Protein HGH1 homolog	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01259g10024.1	AT5G46230.1	***-	Protein of unknown function, DUF538 LENGTH=143	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf01820g00027.1	sp|Q9M302|PP270_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03503g00001.1	sp|Q503L9|NXN_DANRE	*-*-	Nucleoredoxin	IPR012336 (Thioredoxin-like fold)	
Niben101Scf03072g02003.1	AT5G66710.1	****	Protein kinase superfamily protein LENGTH=405	IPR011009 (Protein kinase-like domain), IPR015784 (Putative serine/threonine-protein kinase, plants)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00202g04006.1	emb|CDX73771.1|	***-	BnaC08g22320D [Brassica napus]	IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf02085g12016.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf08208g04007.1	AT4G20840.1	****	FAD-binding Berberine family protein LENGTH=539	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf27717g00001.1	AT4G12520.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=129	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02790g00006.1	AT5G57010.1	***-	calmodulin-binding family protein LENGTH=495		
Niben101Scf10324g00002.1	ref|XP_007035232.1|	***-	Family of Uncharacterized protein function, putative [Theobroma cacao] gb|EOY06158.1| Family of Uncharacterized protein function, putative [Theobroma cacao]	IPR006904 (Protein of unknown function DUF716 (TMEM45))	
Niben101Scf18343g00008.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004842 (ubiquitin-protein transferase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016567 (protein ubiquitination), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02318g02009.1	sp|Q9FN32|YIPL7_ARATH	*-*-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf06280g02001.1	sp|P49641|MA2A2_HUMAN	****	Alpha-mannosidase 2x	IPR011013 (Galactose mutarotase-like domain), IPR011330 (Glycoside hydrolase/deacetylase, beta/alpha-barrel), IPR013780 (Glycosyl hydrolase, family 13, all-beta), IPR028995 (Glycoside hydrolase, families 57/38, central domain)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004559 (alpha-mannosidase activity), GO:0005975 (carbohydrate metabolic process), GO:0006013 (mannose metabolic process), GO:0008270 (zinc ion binding), GO:0015923 (mannosidase activity), GO:0030246 (carbohydrate binding)
Niben101Scf00436g10019.1	sp|Q9FYC2|PAO_ARATH	****	Pheophorbide a oxygenase, chloroplastic	IPR013626 (Pheophorbide a oxygenase), IPR017941 (Rieske [2Fe-2S] iron-sulphur domain)	GO:0010277 (chlorophyllide a oxygenase [overall] activity), GO:0016491 (oxidoreductase activity), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11937g01006.1	ref|NP_001052728.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf17983g00009.1	gb|KGO72783.1|	***-	Vacuolar import/degradation protein Vid24 [Penicillium italicum]	IPR018618 (Vacuolar import/degradation protein Vid24)	
Niben101Scf38489g00003.1	sp|P0CB49|YLPM1_RAT	*-*-	YLP motif-containing protein 1	IPR026314 (YLP motif-containing protein 1)	GO:0005634 (nucleus)
Niben101Scf11515g00017.1	AT5G10500.1	*-*-	Kinase interacting (KIP1-like) family protein LENGTH=848	IPR011684 (KIP1-like)	
Niben101Scf05867g00005.1	sp|P52855|RLA1_MAIZE	*-*-	60S acidic ribosomal protein P1	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf05551g00003.1	AT5G33320.1	***-	Glucose-6-phosphate/phosphate translocator-related LENGTH=408	IPR004696 (Triose phosphate/phosphoenolpyruvate translocator), IPR004853 (Triose-phosphate transporter domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf16165g00012.1	sp|B1A976|RK2_CARPA	*-*-	50S ribosomal protein L2, chloroplastic	IPR012340 (Nucleic acid-binding, OB-fold), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01426g04001.1	sp|Q5F3B2|RN166_CHICK	--*-	RING finger protein 166	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003824 (catalytic activity), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05217g00004.1	sp|B9HCR2|MTNA_POPTR	*-*-	Methylthioribose-1-phosphate isomerase	IPR000649 (Initiation factor 2B-related)	GO:0044237 (cellular metabolic process)
Niben101Scf02074g04067.1	AT2G07749.1	***-	Mitovirus RNA-dependent RNA polymerase LENGTH=246	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf10464g00006.1	ref|NP_179175.3|	***-	P-loop containing nucle [Arabidopsis thaliana]	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf01220g00010.1	sp|O48850|VA725_ARATH	****	Vesicle-associated membrane protein 725	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf01464g01004.1	ref|NP_001189809.1|	--*-	DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana] gb|AEE74160.1| DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana]	IPR007592 (Protein of unknown function DUF573)	
Niben101Scf23637g00001.1	sp|Q13191|CBLB_HUMAN	--*-	E3 ubiquitin-protein ligase CBL-B	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03991g00004.1	AT1G23480.1	***-	cellulose synthase-like A3 LENGTH=556	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf00621g05002.1	sp|Q75KR1|PPDK2_ORYSJ	****	Pyruvate, phosphate dikinase 2	IPR010121 (Pyruvate, phosphate dikinase), IPR015813 (Pyruvate/Phosphoenolpyruvate kinase-like domain)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0006090 (pyruvate metabolic process), GO:0016301 (kinase activity), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0050242 (pyruvate, phosphate dikinase activity)
Niben101Scf05160g00003.1	sp|Q84LH3|WEX_ARATH	****	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf06990g00003.1			Unknown protein		
Niben101Scf00687g08017.1	sp|Q9ZWC5|SCL18_ARATH	*-*-	Scarecrow-like protein 18	IPR005202 (Transcription factor GRAS)	
Niben101Scf16516g00009.1	sp|P46014|P2C70_ARATH	****	Protein phosphatase 2C 70	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR008984 (SMAD/FHA domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0005515 (protein binding), GO:0006470 (protein dephosphorylation)
Niben101Scf05166g07009.1	sp|Q9FM19|HIR1_ARATH	***-	Hypersensitive-induced response protein 1	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf00339g01005.1	sp|O34358|HTRA_BACSU	*-**	Serine protease Do-like HtrA	IPR001940 (Peptidase S1C), IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity), GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf02309g03023.1			Unknown protein		
Niben101Scf04547g03006.1	gb|AIQ52336.1|	***-	metal-dependent phosphoesterase [Paenibacillus sp. FSL R7-0331]	IPR016195 (Polymerase/histidinol phosphatase-like)	GO:0003824 (catalytic activity)
Niben101Scf04841g00026.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf09555g02004.1	sp|A2X7Q3|YAB4_ORYSI	***-	Protein YABBY 4	IPR006780 (YABBY protein)	
Niben101Scf02749g05037.1			Unknown protein		
Niben101Scf09659g03018.1	ref|XP_003624634.1|	****	Ethylene-responsive transcription factor [Medicago truncatula]	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00272g09010.1	ref|XP_007046458.1|	*-*-	Trigalactosyldiacylglycerol 1 isoform 5 [Theobroma cacao] gb|EOX90615.1| Trigalactosyldiacylglycerol 1 isoform 5 [Theobroma cacao]		
Niben101Scf03145g01007.1	sp|A8AJD6|SYQ_CITK8	****	Glutamine--tRNA ligase	IPR000924 (Glutamyl/glutaminyl-tRNA synthetase), IPR007638 (Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2), IPR007639 (Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004819 (glutamine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006412 (translation), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006425 (glutaminyl-tRNA aminoacylation), GO:0016876 (ligase activity, forming aminoacyl-tRNA and related compounds), GO:0043039 (tRNA aminoacylation)
Niben101Scf05173g00010.1	sp|Q6F358|PLA6_ORYSJ	*-*-	Phospholipase A1-II 6	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf08168g02012.1	sp|P97872|FMO5_MOUSE	*-**	Dimethylaniline monooxygenase [N-oxide-forming] 5	IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01025g07027.1			Unknown protein		
Niben101Scf11178g02004.1	sp|O22190|GH33_ARATH	***-	Indole-3-acetic acid-amido synthetase GH3.3	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf04871g21001.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07554g01010.1	sp|Q0JKI9|ARFB_ORYSJ	*-*-	Auxin response factor 2	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf03528g01003.1	sp|Q8LA16|ALFL7_ARATH	***-	PHD finger protein ALFIN-LIKE 7	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR021998 (Alfin)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0042393 (histone binding)
Niben101Scf03278g06005.1	sp|Q5FPT6|GLND_GLUOX	--*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf13842g00001.1	emb|CDM78382.1|	--*-	aminomethyltransferase GcvT_2 [Mycobacterium marinum E11]		
Niben101Scf03706g03007.1	emb|CDX80108.1|	***-	BnaA05g00480D [Brassica napus]		
Niben101Scf01750g08008.1			Unknown protein		
Niben101Scf04395g00017.1	ref|XP_007043719.1|	***-	Vascular plant one zinc finger protein isoform 1 [Theobroma cacao] gb|EOX99550.1| Vascular plant one zinc finger protein isoform 1 [Theobroma cacao]		
Niben101Scf08091g00018.1	sp|P62194|PRS8_BOVIN	***-	26S protease regulatory subunit 8	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf02111g11018.1	sp|P12693|ALDH_PSEOL	*-**	Aldehyde dehydrogenase	IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf02575g02002.1	AT3G50120.1	***-	Plant protein of unknown function (DUF247) LENGTH=531	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf00633g02002.1	sp|Q9SAF0|ORP1D_ARATH	***-	Oxysterol-binding protein-related protein 1D	IPR000648 (Oxysterol-binding protein), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf01858g01006.1	sp|P0DI42|CASP2_WHEAT	***-	Casparian strip membrane protein 2	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf00158g06008.1	sp|Q9SD40|SRS1_ARATH	***-	Protein SHI RELATED SEQUENCE 1	IPR007818 (Protein of unknown function DUF702)	
Niben101Scf01278g09009.1	AT3G12870.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=206		
Niben101Scf02562g00023.1	sp|P74214|SRP54_SYNY3	*-**	Signal recognition particle protein	IPR000897 (Signal recognition particle, SRP54 subunit, GTPase domain), IPR007222 (Signal recognition particle receptor, alpha subunit, N-terminal), IPR011012 (Longin-like domain), IPR013822 (Signal recognition particle, SRP54 subunit, helical bundle), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005047 (signal recognition particle binding), GO:0005525 (GTP binding), GO:0005785 (signal recognition particle receptor complex), GO:0006184 (GTP catabolic process), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0006810 (transport), GO:0006886 (intracellular protein transport)
Niben101Scf01172g01003.1	AT2G27230.1	*-*-	transcription factor-related LENGTH=650	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf00491g04002.1	sp|Q9LS42|CASP_ARATH	***-	Protein CASP	IPR012955 (CASP, C-terminal)	GO:0006891 (intra-Golgi vesicle-mediated transport), GO:0030173 (integral component of Golgi membrane)
Niben101Scf03403g03015.1	sp|A6VE40|ARLY_PSEA7	****	Argininosuccinate lyase	IPR000362 (Fumarate lyase family), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal), IPR029419 (Argininosuccinate lyase, C-terminal)	GO:0003824 (catalytic activity), GO:0004056 (argininosuccinate lyase activity), GO:0042450 (arginine biosynthetic process via ornithine)
Niben101Scf01012g04002.1	ref|WP_009785316.1|	*-**	thiol:disulfide interchange protein [Lyngbya sp. PCC 8106] gb|EAW36052.1| Thioredoxin-like protein [Lyngbya sp. PCC 8106]	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00870g13011.1	ref|YP_002608410.1|	*-*-	orf145 [Vitis vinifera] emb|CAQ77680.1| orf145 [Vitis vinifera] gb|ACS15213.1| ORF145 [Vitis vinifera]		
Niben101Scf03894g03003.1			Unknown protein		
Niben101Scf02972g03006.1	sp|P55338|FABF_VIBHA	***-	3-oxoacyl-[acyl-carrier-protein] synthase 2	IPR017568 (3-oxoacyl-[acyl-carrier-protein] synthase 2), IPR020841 (Polyketide synthase, beta-ketoacyl synthase domain)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00753g03016.1	sp|Q9XF43|KCS6_ARATH	***-	3-ketoacyl-CoA synthase 6	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00398g06020.1	ref|XP_010094546.1|	*-*-	F-box/kelch-repeat protein [Morus notabilis] gb|EXB56300.1| F-box/kelch-repeat protein [Morus notabilis]		
Niben101Scf01462g01010.1	AT5G58080.1	*-*-	response regulator 18 LENGTH=618	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf38970g00001.1	sp|Q5U9F2|GNA1_ORYSJ	--**	Glucosamine 6-phosphate N-acetyltransferase 1	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf05041g00001.1	ref|XP_002525515.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF36873.1| conserved hypothetical protein [Ricinus communis]	IPR009902 (Protein of unknown function DUF1442), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf04660g00001.1	emb|CDX89594.1|	*-*-	BnaC04g36130D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf00231g07002.1	sp|P51821|ARF1_CHLRE	*-*-	ADP-ribosylation factor 1	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf18822g01004.1	dbj|BAH57073.1|	***-	[Arabidopsis thaliana]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01623g00015.1	AT3G22942.1	***-	G-protein gamma subunit 2 LENGTH=100	IPR015898 (G-protein gamma-like domain)	GO:0004871 (signal transducer activity), GO:0005834 (heterotrimeric G-protein complex), GO:0007186 (G-protein coupled receptor signaling pathway)
Niben101Scf08940g01001.1	sp|Q9FKS8|LHT1_ARATH	***-	Lysine histidine transporter 1	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf09828g00002.1	AT5G58070.1	***-	temperature-induced lipocalin LENGTH=186	IPR022271 (Lipocalin, ApoD type)	GO:0005215 (transporter activity)
Niben101Scf01694g12010.1	sp|Q66HG1|DMTF1_RAT	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01466g01017.1	gb|ABF81442.1|	*-*-	NBS-LRR type disease resistance protein [Populus trichocarpa]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf09548g00001.1			Unknown protein		
Niben101Scf15100g00003.1	AT3G18670.1	***-	Ankyrin repeat family protein LENGTH=598	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	
Niben101Scf16833g00004.1	sp|O23184|CML19_ARATH	****	Calcium-binding protein CML19	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf15965g00014.1	emb|CDY33930.1|	***-	BnaA02g30570D [Brassica napus]		
Niben101Scf02354g05003.1	AT5G25752.1	*-*-	rhomboid-like protein 11 LENGTH=280		
Niben101Scf07937g03024.1	sp|Q9ZVD5|AGO4_ARATH	***-	Protein argonaute 4	IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf00504g03002.1	sp|Q8GZA8|ULT1_ARATH	***-	Protein ULTRAPETALA 1	IPR010919 (SAND domain-like)	GO:0003677 (DNA binding)
Niben101Scf01734g00001.1	sp|Q8VZ52|ATG10_ARATH	***-	Ubiquitin-like-conjugating enzyme ATG10	IPR007135 (Autophagy-related protein 3)	
Niben101Scf08979g00006.1	AT4G38840.1	***-	SAUR-like auxin-responsive protein family LENGTH=99		
Niben101Scf04610g07001.1	sp|Q8RY60|Y1733_ARATH	***-	DUF21 domain-containing protein	IPR002550 (Domain of unknown function DUF21)	
Niben101Scf02537g05004.1	sp|Q9ZPE7|EXO_ARATH	***-	Protein EXORDIUM	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf03839g08001.1	emb|CDX73444.1|	*-*-	BnaC08g25590D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant), IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf04728g00013.1	AT4G28706.4	*-*-	pfkB-like carbohydrate kinase family protein LENGTH=440	IPR029056 (Ribokinase-like)	
Niben101Scf39364g00010.1	AT2G17840.1	***-	Senescence/dehydration-associated protein-related LENGTH=452	IPR009686 (Senescence/spartin-associated)	
Niben101Scf02429g07032.1	AT4G08240.2	***-	unknown protein; Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=136		
Niben101Scf00482g09001.1	sp|Q8RWZ7|VHAA1_ARATH	****	V-type proton ATPase subunit a1	IPR002490 (V-type  ATPase, V0 complex, 116kDa subunit family)	GO:0000220 (vacuolar proton-transporting V-type ATPase, V0 domain), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf00869g06023.1	ref|XP_712947.1|	*-**	potential heme/steroid binding protein [Candida albicans SC5314] ref|XP_712853.1| potential heme/steroid binding protein [Candida albicans SC5314] gb|EAK93684.1| potential heme/steroid binding protein [Candida albicans SC5314] gb|EAK93782.1| potential heme/steroid binding protein [Candida albicans SC5314] gb|KGQ98598.1| hypothetical protein MEU_00189 [Candida albicans P37005] gb|KGQ99325.1| hypothetical protein MEO_00186 [Candida albicans P94015] gb|KGR04205.1| hypothetical protein MG1_00185 [Candida albicans GC75] gb|KGR15339.1| hypothetical protein MG5_00187 [Candida albicans P57072] gb|KGR21239.1| hypothetical protein MG3_00237 [Candida albicans P78048] gb|KGR23264.1| hypothetical protein MG9_00194 [Candida albicans P37037] gb|KGT72391.1| hypothetical protein MEK_00191 [Candida albicans 12C] gb|KGU14548.1| hypothetical protein MEQ_00187 [Candida albicans P87] gb|KGU18454.1| hypothetical protein MEM_00196 [Candida albicans L26] gb|KGU19562.1| hypothetical protein MEY_00192 [Candida albicans 19F] gb|KGU33585.1| hypothetical protein MG7_00186 [Candida albicans P34048] gb|KGU36389.1| hypothetical protein MGM_00187 [Candida albicans P75063] gb|KGU37417.1| hypothetical protein MGK_00189 [Candida albicans P57055] gb|KHC40248.1| hypothetical protein MGO_00188 [Candida albicans P76055] gb|KHC43040.1| hypothetical protein MGQ_00186 [Candida albicans P76067] gb|KHC50093.1| hypothetical protein W5O_00189 [Candida albicans Ca6] gb|KHC57166.1| hypothetical protein MEW_00193 [Candida albicans P60002] gb|KHC61824.1| hypothetical protein MGC_00193 [Candida albicans P37039] gb|KHC68377.1| hypothetical protein MGE_00193 [Candida albicans P75010] gb|KHC75625.1| hypothetical protein MGI_00190 [Candida albicans P75016] gb|KHC82984.1| hypothetical protein W5Q_00191 [Candida albicans SC5314] gb|KHC85896.1| hypothetical protein MGS_00188 [Candida albicans P78042] gb|KHC89913.1| hypothetical protein I503_00193 [Candida albicans SC5314]	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf08446g03011.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf14274g01004.1			Unknown protein		
Niben101Scf07498g03012.1	AT1G76270.1	*-*-	O-fucosyltransferase family protein LENGTH=572	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf07255g01023.1	sp|A8LIV0|NUOI_DINSH	*-*-	NADH-quinone oxidoreductase subunit I	IPR017896 (4Fe-4S ferredoxin-type, iron-sulphur binding domain)	GO:0051536 (iron-sulfur cluster binding)
Niben101Scf00324g01001.1	AT5G53440.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). LENGTH=1181		
Niben101Scf03263g07008.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01190g03001.1	sp|P0AGK6|YHBY_ECO57	--**	RNA-binding protein YhbY	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf06221g04014.1	gb|AGI48801.1|	*-*-	NADH dehydrogenase subunit 6 (mitochondrion) [Lolium perenne]		
Niben101Scf03971g00013.1	sp|Q42430|ZFP1_WHEAT	--*-	Zinc finger protein 1	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf03710g10003.1	AT1G21660.1	***-	Chaperone DnaJ-domain superfamily protein LENGTH=523	IPR001623 (DnaJ domain)	
Niben101Scf00520g11002.1			Unknown protein		
Niben101Scf00594g07006.1	sp|P38929|ATC2_YEAST	*-*-	Calcium-transporting ATPase 2	IPR006068 (Cation-transporting P-type ATPase, C-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding)
Niben101Scf10152g03006.1	sp|Q06881|BCCP_NOSS1	--*-	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	IPR000089 (Biotin/lipoyl attachment)	
Niben101Scf01650g00015.1	AT3G20490.1	***-	unknown protein; Has 754 Blast hits to 165 proteins in 64 species: Archae - 0; Bacteria - 48; Metazoa - 26; Fungi - 25; Plants - 36; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink). LENGTH=458		
Niben101Scf02299g01001.1	sp|Q9ZTX8|ARFF_ARATH	*-**	Auxin response factor 6	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf03671g03027.1	sp|O65041|UBA3_ARATH	*-*-	NEDD8-activating enzyme E1 catalytic subunit	IPR014929 (E2 binding)	GO:0005524 (ATP binding), GO:0016881 (acid-amino acid ligase activity), GO:0045116 (protein neddylation)
Niben101Scf16768g01002.1	sp|Q3E6Q1|PPR32_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Ctg14858g00001.1	gb|AGT02398.1|	*-*-	MYB transcription factor [Populus trichocarpa]		
Niben101Scf03048g04002.1	sp|Q6NM73|CRR3_ARATH	***-	Cysteine-rich repeat secretory protein 3	IPR002902 (Gnk2-homologous domain)	
Niben101Scf13183g00006.1	sp|Q08891|FACR2_ARATH	--*-	Fatty acyl-CoA reductase 2		
Niben101Scf08709g02002.1	AT3G12380.2	***-	actin-related protein 5 LENGTH=730	IPR004000 (Actin family)	GO:0006281 (DNA repair), GO:0006355 (regulation of transcription, DNA-templated), GO:0031011 (Ino80 complex)
Niben101Scf10169g04022.1	sp|P49961|ENTP1_HUMAN	***-	Ectonucleoside triphosphate diphosphohydrolase 1	IPR000407 (Nucleoside phosphatase GDA1/CD39)	GO:0016787 (hydrolase activity)
Niben101Scf00185g04007.1	AT4G08300.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=373	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf03114g03002.1			Unknown protein		
Niben101Scf05449g03016.1	AT4G29660.1	***-	embryo defective 2752 LENGTH=103		
Niben101Scf03689g01010.1	sp|B2TIB8|MUTL_CLOBB	*-**	DNA mismatch repair protein MutL	IPR014790 (MutL, C-terminal, dimerisation), IPR028830 (DNA mismatch repair protein Mlh3)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0007131 (reciprocal meiotic recombination), GO:0032300 (mismatch repair complex)
Niben101Scf04847g02011.1	sp|O64905|FPPS_HELAN	***-	Farnesyl pyrophosphate synthase	IPR000092 (Polyprenyl synthetase)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf05349g00002.1	emb|CDY35121.1|	***-	BnaA06g11310D [Brassica napus]		
Niben101Scf02816g16027.1	AT4G22810.1	*-*-	Predicted AT-hook DNA-binding family protein LENGTH=324	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf02719g00005.1	sp|P53167|PUS2_YEAST	*-**	tRNA pseudouridine(27/28) synthase	IPR001406 (Pseudouridine synthase I, TruA), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf03484g07001.1			Unknown protein		
Niben101Scf09867g02012.1	sp|O80912|PER23_ARATH	--*-	Peroxidase 23		
Niben101Scf00837g01002.1	sp|Q9QUR6|PPCE_MOUSE	****	Prolyl endopeptidase	IPR002470 (Peptidase S9A, prolyl oligopeptidase), IPR023302 (Peptidase S9A, N-terminal domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0070008 (serine-type exopeptidase activity)
Niben101Scf21557g01008.1	AT4G24910.1	***-	Protein of unknown function (DUF579) LENGTH=315	IPR021148 (Putative polysaccharide biosynthesis protein)	
Niben101Scf10796g00009.1	sp|Q1CZI7|HTPG_MYXXD	*-*-	Chaperone protein HtpG	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf00920g08007.1	AT3G24820.1	***-	BSD domain-containing protein LENGTH=186	IPR005607 (BSD)	
Niben101Scf12422g01019.1	sp|Q9FJP6|PUB38_ARATH	***-	U-box domain-containing protein 38	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf17701g01020.1	sp|P49107|PSAN_ARATH	****	Photosystem I reaction center subunit N, chloroplastic	IPR008796 (Photosystem I PsaN, reaction centre subunit N)	GO:0005516 (calmodulin binding), GO:0009522 (photosystem I), GO:0015979 (photosynthesis), GO:0042651 (thylakoid membrane)
Niben101Scf00505g05001.1	emb|CDX91323.1|	--*-	BnaC02g27340D [Brassica napus]		
Niben101Scf03374g09001.1	sp|A6ZVB1|SDHL_YEAS7	***-	L-serine dehydratase	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme)	GO:0006520 (cellular amino acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01313g00016.1			Unknown protein		
Niben101Scf00052g09009.1	AT5G10270.1	****	cyclin-dependent kinase C;1 LENGTH=505	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00757g01002.1	emb|CDY43257.1|	*-*-	BnaC05g48500D [Brassica napus]		
Niben101Scf08684g00005.1	sp|Q2IXN5|RL17_RHOP2	***-	50S ribosomal protein L17	IPR000456 (Ribosomal protein L17)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06172g01002.1			Unknown protein		
Niben101Scf15367g00001.1	sp|P22240|TAS14_SOLLC	--**	Abscisic acid and environmental stress-inducible protein TAS14	IPR000167 (Dehydrin)	GO:0006950 (response to stress), GO:0009415 (response to water)
Niben101Scf07482g01014.1	emb|CDY02362.1|	***-	BnaA09g25400D [Brassica napus]		
Niben101Scf01108g01008.1	gb|ABF99235.1|	--**	GRF zinc finger family protein, expressed [Oryza sativa Japonica Group]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00862g00015.1	AT1G65700.3	***-	Small nuclear ribonucleoprotein family protein LENGTH=141	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf33499g00004.1	ref|XP_003626920.1|	--**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf02015g06005.1	AT1G55370.2	***-	NDH-dependent cyclic electron flow 5 LENGTH=354	IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf00197g02006.1	AT1G62020.1	***-	Coatomer, alpha subunit LENGTH=1216	IPR011048 (Cytochrome cd1-nitrite reductase-like, haem d1 domain), IPR016391 (Coatomer alpha subunit)	GO:0005198 (structural molecule activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030126 (COPI vesicle coat)
Niben101Scf09452g01013.1	AT5G43100.1	***-	Eukaryotic aspartyl protease family protein LENGTH=631	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04664g02001.1	sp|Q9GZT6|CC90B_HUMAN	***-	Coiled-coil domain-containing protein 90B, mitochondrial	IPR024461 (Protein of unknown function DUF1640)	
Niben101Scf21589g00004.1	sp|Q39191|WAK1_ARATH	--*-	Wall-associated receptor kinase 1	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf04122g02001.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf05183g06007.1	sp|F4IXW2|BIG5_ARATH	****	Brefeldin A-inhibited guanine nucleotide-exchange protein 5	IPR000904 (Sec7 domain), IPR016024 (Armadillo-type fold), IPR023394 (Sec7 domain, alpha orthogonal bundle)	GO:0005086 (ARF guanyl-nucleotide exchange factor activity), GO:0005488 (binding), GO:0032012 (regulation of ARF protein signal transduction)
Niben101Scf01978g00010.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07962g00010.1	sp|Q9U539|OCT1_CAEEL	****	Organic cation transporter 1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01123g00005.1	sp|O88531|PPT1_MOUSE	****	Palmitoyl-protein thioesterase 1	IPR002472 (Palmitoyl protein thioesterase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0002084 (protein depalmitoylation), GO:0008474 (palmitoyl-(protein) hydrolase activity), GO:0098599 (palmitoyl hydrolase activity)
Niben101Scf01232g02005.1	ref|XP_007038839.1|	***-	Pentatricopeptide repeat superfamily protein, putative isoform 1 [Theobroma cacao] gb|EOY23340.1| Pentatricopeptide repeat superfamily protein, putative isoform 1 [Theobroma cacao]	IPR012349 (FMN-binding split barrel)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01694g07002.1	sp|Q9CQ48|NUDC2_MOUSE	***-	NudC domain-containing protein 2	IPR008978 (HSP20-like chaperone)	
Niben101Scf02725g02001.1	sp|Q93XX4|C2D61_ARATH	*-*-	C2 domain-containing protein		
Niben101Scf07391g04029.1	ref|XP_002509745.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF51132.1| conserved hypothetical protein [Ricinus communis]		
Niben101Ctg14184g00002.1	sp|B1I158|PDXT_DESAP	*-**	Glutamine amidotransferase subunit PdxT	IPR002161 (PdxT/SNO family), IPR029062 (Class I glutamine amidotransferase-like)	GO:0006543 (glutamine catabolic process), GO:0016740 (transferase activity), GO:0042823 (pyridoxal phosphate biosynthetic process)
Niben101Scf02237g07008.1	emb|CAD40938.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf04212g00015.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02335g03009.1			Unknown protein		
Niben101Scf04995g13007.1	sp|Q03D26|MNTH_LACC3	****	Divalent metal cation transporter MntH	IPR001046 (NRAMP family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03444g03013.1	sp|Q3T0R4|DRS7B_BOVIN	*-**	Dehydrogenase/reductase SDR family member 7B	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf31091g00001.1	sp|O65238|Y5537_ARATH	--*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain)	
Niben101Scf00408g07005.1	sp|A2YQK9|MAD26_ORYSI	****	MADS-box transcription factor 26	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf04339g00006.1	AT5G54690.1	****	galacturonosyltransferase 12 LENGTH=535	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf07951g02028.1	sp|Q8LED3|TBL3_ARATH	***-	Protein trichome birefringence-like 3	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf03096g01022.1	sp|Q9LRJ9|CRR38_ARATH	***-	Cysteine-rich repeat secretory protein 38	IPR002902 (Gnk2-homologous domain)	
Niben101Scf08617g01003.1	AT5G10770.1	***-	Eukaryotic aspartyl protease family protein LENGTH=474	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03068g00011.1	sp|Q3C1J5|ATPB_NICSY	*-**	ATP synthase subunit beta, chloroplastic	IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR001469 (ATPase, F1 complex, delta/epsilon subunit), IPR020003 (ATPase, alpha/beta subunit, nucleotide-binding domain, active site)	GO:0005524 (ATP binding), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf04875g06021.1	ref|XP_003588326.1|	--*-	ATP synthase subunit alpha [Medicago truncatula]		
Niben101Scf01269g05010.1	gb|KEH18450.1|	--*-	CTC-interacting domain protein [Medicago truncatula]	IPR025852 (Ataxin 2, SM domain)	
Niben101Scf03714g02002.1	AT2G27770.1	***-	Plant protein of unknown function (DUF868) LENGTH=320	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf04159g01006.1	AT1G78895.1	***-	Reticulon family protein LENGTH=164	IPR003388 (Reticulon)	
Niben101Scf01190g02003.1	sp|Q0JGS5|EAR1_ORYSJ	*-*-	Protein terminal ear1 homolog	IPR007201 (RNA recognition motif 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05348g00005.1	emb|CAZ96176.1|	***-	conserved hypothetical protein [Saccharum hybrid cultivar R570]		
Niben101Scf08127g08017.1	sp|Q9FZ70|FDL1_ARATH	*-*-	F-box/FBD/LRR-repeat protein		
Niben101Scf01571g00012.1	gb|ABU50826.1|	*-*-	GAGA-binding transcriptional activator [Arabidopsis arenosa]	IPR010409 (GAGA-binding transcriptional activator)	
Niben101Scf02908g01015.1	AT1G21740.1	*-*-	Protein of unknown function (DUF630 and DUF632) LENGTH=953	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf00897g03003.1	sp|Q6DR10|TBL43_ARATH	***-	Protein trichome birefringence-like 43	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf05062g01004.1			Unknown protein		
Niben101Scf05828g00014.1	sp|Q6N069|NAA16_HUMAN	***-	N-alpha-acetyltransferase 16, NatA auxiliary subunit	IPR021183 (N-terminal acetyltransferase A, auxiliary subunit)	GO:0005515 (protein binding)
Niben101Scf04312g00007.1	AT3G60310.1	*-*-	unknown protein; Has 22 Blast hits to 18 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=687		
Niben101Scf00370g02011.1	sp|Q6INH1|RN157_XENLA	*-*-	RING finger protein 157	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04217g04001.1	sp|Q1JPL7|PME18_ARATH	****	Pectinesterase/pectinesterase inhibitor 18	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01958g02008.1	sp|Q9H9S4|CB39L_HUMAN	****	Calcium-binding protein 39-like	IPR013878 (Mo25-like)	GO:0005488 (binding)
Niben101Scf03906g01001.1	sp|B0WII7|WIBG_CULQU	*-*-	Partner of Y14 and mago	IPR015362 (Exon junction complex, Pym)	GO:0005515 (protein binding)
Niben101Scf03824g00001.1	ref|WP_018861036.1|	*-*-	MULTISPECIES: allantoate amidohydrolase [Thioalkalivibrio]	IPR011650 (Peptidase M20, dimerisation domain)	
Niben101Scf05961g00005.1	sp|Q9QY93|DCTP1_MOUSE	***-	dCTP pyrophosphatase 1	IPR004518 (NTP pyrophosphohydrolase MazG, putative catalytic core), IPR009039 (EAR), IPR011394 (NTP Pyrophosphohydrolase MazG-related, RS21-C6)	
Niben101Scf09409g02015.1	AT3G02468.1	*-*-	conserved peptide upstream open reading frame 9 LENGTH=52	IPR012511 (S-adenosyl-l-methionine decarboxylase leader peptide)	
Niben101Scf23078g00012.1	sp|Q81CK1|KYNB_BACCR	****	Kynurenine formamidase	IPR007325 (Kynurenine formamidase)	GO:0004061 (arylformamidase activity), GO:0019441 (tryptophan catabolic process to kynurenine)
Niben101Scf09116g04022.1	sp|Q6P756|NECP2_RAT	***-	Adaptin ear-binding coat-associated protein 2	IPR011993 (Pleckstrin homology-like domain), IPR012466 (Adaptin ear-binding coat-associated protein 1 NECAP-1)	GO:0006897 (endocytosis), GO:0016020 (membrane)
Niben101Scf02668g05016.1	sp|A0RLR1|MNMG_BACAH	*-**	tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG	IPR002218 (Glucose-inhibited division protein A-related)	GO:0008033 (tRNA processing), GO:0050660 (flavin adenine dinucleotide binding)
Niben101Scf07160g00025.1	AT4G38840.1	***-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf11899g00018.1	AT1G51580.1	*-**	RNA-binding KH domain-containing protein LENGTH=621	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf12609g01010.1	sp|Q9SG02|RDR6_ARATH	****	RNA-dependent RNA polymerase 6	IPR007855 (RNA-dependent RNA polymerase, eukaryotic-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003968 (RNA-directed RNA polymerase activity)
Niben101Scf00472g02009.1	sp|Q8W3M6|UBCP_ARATH	****	Ubiquitin-like domain-containing CTD phosphatase	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain), IPR029071 (Ubiquitin-related domain)	GO:0004721 (phosphoprotein phosphatase activity), GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf03264g05007.1	sp|Q94IR2|CCD1_PHAVU	*-*-	Carotenoid 9,10(9',10')-cleavage dioxygenase 1	IPR004294 (Carotenoid oxygenase)	
Niben101Scf00573g01002.1	AT5G10240.1	****	asparagine synthetase 3 LENGTH=578	IPR006426 (Asparagine synthase, glutamine-hydrolyzing), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004066 (asparagine synthase (glutamine-hydrolyzing) activity), GO:0006529 (asparagine biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf03077g03004.1	sp|Q8NE22|SETD9_HUMAN	--*-	SET domain-containing protein 9		
Niben101Scf16166g00001.1	sp|Q6P2Q9|PRP8_HUMAN	*-**	Pre-mRNA-processing-splicing factor 8	IPR012337 (Ribonuclease H-like domain), IPR021983 (PRP8 domain IV core), IPR027652 (Pre-mRNA-processing-splicing factor 8)	GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0005681 (spliceosomal complex)
Niben101Scf00650g04008.1	gb|AAC49408.1|	*-*-	PRF [Solanum lycopersicum]		
Niben101Scf09976g00013.1	AT1G64110.2	*-*-	P-loop containing nucleoside triphosphate hydrolases superfamily protein LENGTH=829	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf06512g02001.1	sp|Q9M5Q1|FUT1_PEA	*-**	Galactoside 2-alpha-L-fucosyltransferase	IPR004938 (Xyloglucan fucosyltransferase)	GO:0008107 (galactoside 2-alpha-L-fucosyltransferase activity), GO:0016020 (membrane), GO:0042546 (cell wall biogenesis)
Niben101Scf03030g01001.1	sp|P0DI44|CASP1_SOLTU	***-	Casparian strip membrane protein 1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf00305g05037.1	sp|Q8VXX4|RFC3_ARATH	*-*-	Replication factor C subunit 3	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00177g10012.1	sp|Q8W119|SMH4_MAIZE	--*-	Single myb histone 4	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf12320g03008.1	AT1G50490.1	***-	ubiquitin-conjugating enzyme 20 LENGTH=180	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf00926g01007.1	sp|Q5FSL4|DNAJ_GLUOX	--*-	Chaperone protein DnaJ		
Niben101Scf02362g01007.1	sp|Q9FGI1|LTN1_ARATH	***-	E3 ubiquitin-protein ligase listerin	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf05549g02006.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02530g02009.1	sp|O82067|TOM7A_SOLTU	*-**	Mitochondrial import receptor subunit TOM7-1	IPR012621 (Mitochondrial import receptor subunit TOM7)	GO:0005742 (mitochondrial outer membrane translocase complex), GO:0030150 (protein import into mitochondrial matrix)
Niben101Scf00878g04012.1	emb|CDY20120.1|	***-	BnaA01g28820D [Brassica napus]		
Niben101Scf07428g01006.1	sp|P26882|PPID_BOVIN	*-*-	Peptidyl-prolyl cis-trans isomerase D	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR011990 (Tetratricopeptide-like helical domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0005515 (protein binding), GO:0006457 (protein folding)
Niben101Ctg11634g00001.1	AT2G44020.1	****	Mitochondrial transcription termination factor family protein LENGTH=507	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06514g02012.1	ref|NP_001056990.1|	***-	[Oryza sativa Japonica Group]		
Niben101Scf07650g03012.1			Unknown protein		
Niben101Scf00735g02005.1	sp|Q9SVX5|DRE2F_ARATH	*-*-	Dehydration-responsive element-binding protein 2F		
Niben101Scf01301g03031.1	ref|XP_002515568.1|	****	heat shock protein binding protein, putative [Ricinus communis] gb|EEF47017.1| heat shock protein binding protein, putative [Ricinus communis]	IPR001623 (DnaJ domain), IPR016024 (Armadillo-type fold), IPR025640 (Domain of unknown function DUF4339)	GO:0005488 (binding)
Niben101Scf08592g01015.1	AT1G11360.1	*-*-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=242	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf03602g01007.1	sp|A9NE17|FTSH_ACHLI	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf08001g02016.1	sp|Q7XHI9|BH084_ARATH	***-	Transcription factor bHLH84	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00987g00003.1			Unknown protein	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf07868g00002.1	emb|CDY66962.1|	***-	BnaC01g43480D [Brassica napus]		
Niben101Scf01141g01003.1	ref|XP_002538339.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF24045.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07508g06012.1	AT3G47490.1	****	HNH endonuclease LENGTH=234	IPR002711 (HNH endonuclease)	GO:0003676 (nucleic acid binding), GO:0004519 (endonuclease activity)
Niben101Scf04732g01002.1	sp|Q9SMU7|SRP09_ARATH	****	Signal recognition particle 9 kDa protein	IPR008832 (Signal recognition particle, SRP9 subunit), IPR009018 (Signal recognition particle, SRP9/SRP14 subunit)	GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0045900 (negative regulation of translational elongation), GO:0048500 (signal recognition particle)
Niben101Scf01510g00016.1			Unknown protein		
Niben101Scf03169g05001.1	sp|Q9NGQ2|KIF1_DICDI	*-**	Kinesin-related protein 1	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf04570g05009.1	ref|XP_010108873.1|	*-*-	Peptide methionine sulfoxide reductase MsrA [Morus notabilis] gb|EXC20513.1| Peptide methionine sulfoxide reductase MsrA [Morus notabilis]		
Niben101Scf06513g00005.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf06683g02004.1			Unknown protein	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf04691g00001.1	sp|Q71N54|LCAT4_ARATH	****	Lecithin-cholesterol acyltransferase-like 4	IPR003386 (Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0008374 (O-acyltransferase activity)
Niben101Scf07798g00006.1	AT4G39520.1	****	GTP-binding protein-related LENGTH=369	IPR005225 (Small GTP-binding protein domain), IPR012676 (TGS-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf01482g02017.1			Unknown protein		
Niben101Scf05057g02007.1	AT1G11260.1	****	sugar transporter 1 LENGTH=522	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04325g01025.1			Unknown protein		
Niben101Scf01927g03004.1	sp|Q9LVQ0|PME31_ARATH	****	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf06509g00003.1	sp|P70627|FOLH1_RAT	*-*-	Glutamate carboxypeptidase 2	IPR007365 (Transferrin receptor-like, dimerisation domain)	
Niben101Scf25073g01002.1	AT5G20820.1	***-	SAUR-like auxin-responsive protein family LENGTH=127	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03832g01002.1			Unknown protein		
Niben101Scf03437g02001.1	AT1G79650.4	****	Rad23 UV excision repair protein family LENGTH=395	IPR004806 (UV excision repair protein Rad23), IPR009060 (UBA-like), IPR029071 (Ubiquitin-related domain)	GO:0003684 (damaged DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006289 (nucleotide-excision repair), GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
Niben101Scf04505g01001.1	ref|XP_007052538.1|	--*-	F-box/WD repeat-containing protein 4 [Theobroma cacao] gb|EOX96695.1| F-box/WD repeat-containing protein 4 [Theobroma cacao]		
Niben101Scf10002g00010.1	sp|Q6GP53|NAA50_XENLA	--**	N-alpha-acetyltransferase 50	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf06112g00006.1	AT5G38690.1	*-*-	Zinc-finger domain of monoamine-oxidase A repressor R1 protein LENGTH=572	IPR018501 (DDT domain superfamily), IPR028942 (WHIM1 domain)	
Niben101Ctg15772g00003.1	sp|A7MBJ2|SENP7_BOVIN	--*-	Sentrin-specific protease 7		
Niben101Scf13150g00001.1			Unknown protein		
Niben101Scf11709g01029.1	AT4G22290.1	***-	Ubiquitin-specific protease family C19-related protein LENGTH=445		
Niben101Scf29076g00011.1	sp|P60364|CH601_RHOPA	***-	60 kDa chaperonin 1	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding), GO:0042026 (protein refolding), GO:0044267 (cellular protein metabolic process)
Niben101Scf02024g02010.1	sp|P31927|SPSA_MAIZE	****	Sucrose-phosphate synthase	IPR012819 (Sucrose phosphate synthase, plant), IPR028098 (Glycosyltransferase subfamily 4, N-terminal domain)	GO:0005985 (sucrose metabolic process), GO:0009058 (biosynthetic process), GO:0046524 (sucrose-phosphate synthase activity)
Niben101Ctg09383g00002.1	gb|ACG34935.1|	*-*-	RAB5-interacting protein isoform a [Zea mays]		
Niben101Scf04170g00006.1	sp|Q8L868|E1311_ARATH	***-	Glucan endo-1,3-beta-glucosidase 11	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00152g22008.1	sp|Q9C698|FPP6_ARATH	***-	Filament-like plant protein 6	IPR008587 (Filament-like plant protein)	
Niben101Scf04096g09005.1	AT4G00730.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=802	IPR002913 (START domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf01276g05010.1			Unknown protein		
Niben101Scf00132g01002.1	sp|Q9VLR5|TCP4_DROME	*-**	RNA polymerase II transcriptional coactivator	IPR009044 (ssDNA-binding transcriptional regulator), IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding), GO:0003713 (transcription coactivator activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf16888g00020.1	sp|B8BDW1|XCT_ORYSI	***-	Protein XAP5 CIRCADIAN TIMEKEEPER	IPR007005 (XAP5 protein)	GO:0005634 (nucleus)
Niben101Scf05057g02005.1	sp|P80496|ATP7_SOLTU	*-*-	ATP synthase 27 kDa subunit, mitochondrial		
Niben101Scf00820g00001.1	sp|Q2R4J4|C3H63_ORYSJ	*-*-	Zinc finger CCCH domain-containing protein 63	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf05082g02004.1	ref|XP_002510409.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF52596.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04182g00008.1	sp|Q9LHS8|LBD33_ARATH	*-*-	LOB domain-containing protein 33	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf00885g09009.1	sp|O23492|INT4_ARATH	*-*-	Inositol transporter 4		
Niben101Scf00348g04004.1	sp|Q9LFC5|PP360_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06290g03019.1	sp|Q5XBV2|PFKA_STRP6	****	ATP-dependent 6-phosphofructokinase	IPR000023 (Phosphofructokinase domain), IPR012004 (Pyrophosphate-dependent phosphofructokinase TP0108), IPR022953 (Phosphofructokinase)	GO:0003872 (6-phosphofructokinase activity), GO:0005524 (ATP binding), GO:0006002 (fructose 6-phosphate metabolic process), GO:0006096 (glycolytic process)
Niben101Scf12967g01003.1	sp|Q6C3X7|DBP5_YARLI	****	ATP-dependent RNA helicase DBP5	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01237g13004.1	emb|CDX98828.1|	***-	BnaC09g50070D [Brassica napus]		
Niben101Scf03979g05025.1	sp|A6X554|LOVHK_OCHA4	--*-	Blue-light-activated histidine kinase	IPR000014 (PAS domain)	GO:0004871 (signal transducer activity), GO:0007165 (signal transduction)
Niben101Scf02291g01003.1	AT1G43900.1	*-*-	Protein phosphatase 2C family protein LENGTH=371	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf00682g03004.1	AT5G03795.1	***-	Exostosin family protein LENGTH=518	IPR004263 (Exostosin-like)	
Niben101Scf08812g05005.1	AT1G79740.1	*-*-	hAT transposon superfamily LENGTH=651	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf14929g00006.1	sp|A8MQA3|PP330_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf13029g03023.1	sp|A7QEU4|PER5_VITVI	****	Peroxidase 5	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf37900g00007.1	AT3G09860.1	***-	unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=98		
Niben101Scf01964g03005.1	AT1G09380.1	*-**	nodulin MtN21 /EamA-like transporter family protein LENGTH=374	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01221g20002.1	sp|P58905|AMT11_SOLLC	****	Ammonium transporter 1 member 1	IPR001905 (Ammonium transporter), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf02929g05023.1			Unknown protein		
Niben101Scf02694g06015.1	emb|CDY22120.1|	***-	BnaC01g39810D [Brassica napus]	IPR022228 (Protein of unknown function DUF3755)	
Niben101Scf01460g04028.1	sp|Q9QZA2|PDC6I_RAT	*-*-	Programmed cell death 6-interacting protein	IPR004328 (BRO1 domain), IPR025304 (ALIX V-shaped domain)	GO:0005515 (protein binding)
Niben101Scf07863g00016.1	ref|XP_002530637.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF31745.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03473g00011.1	gb|AED89984.1|	***-	PSL1a [Solanum chacoense x Solanum tuberosum]	IPR008984 (SMAD/FHA domain), IPR026721 (Transmembrane protein 18), IPR029060 (PIN domain-like)	GO:0005515 (protein binding)
Niben101Scf01482g02018.1	emb|CDX99098.1|	*-*-	BnaA06g17890D [Brassica napus]		
Niben101Scf00369g12009.1	sp|Q9M9W1|RL222_ARATH	***-	60S ribosomal protein L22-2	IPR002671 (Ribosomal protein L22e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01063g05025.1	sp|Q9M9M6|NDUS6_ARATH	***-	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial	IPR016668 (NADH dehydrogenase [ubiquinone] (complex I), iron-sulphur protein 6, mitochondria)	
Niben101Scf03766g06002.1	sp|Q9LU89|2A5N_ARATH	****	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf00120g02006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05405g06014.1	AT5G19290.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=330	IPR022742 (Putative lysophospholipase), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07205g00006.1	sp|Q67XJ2|NFYBA_ARATH	****	Nuclear transcription factor Y subunit B-10	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf01985g02007.1	sp|Q4L530|HTRAL_STAHJ	*-**	Serine protease HtrA-like	IPR001940 (Peptidase S1C), IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity), GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf06499g00001.1	sp|Q9C5V5|GLR28_ARATH	****	Glutamate receptor 2.8	IPR017103 (Ionotropic glutamate receptor, plant), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Ctg13610g00001.1	sp|Q86V35|CABP7_HUMAN	*-**	Calcium-binding protein 7	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf11168g00005.1	ref|XP_003605652.1|	*-*-	GDSL esterase/lipase [Medicago truncatula]		
Niben101Scf02790g03009.1	sp|Q2KIG2|WDR5_BOVIN	***-	WD repeat-containing protein 5	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf08167g01004.1			Unknown protein		
Niben101Scf04437g01003.1	gb|ABE66195.1|	****	zinc finger protein-like protein [Arabidopsis thaliana]	IPR002867 (Zinc finger, C6HC-type), IPR012337 (Ribonuclease H-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01965g00005.1	sp|Q94BZ1|ZIFL1_ARATH	***-	Protein ZINC INDUCED FACILITATOR-LIKE 1	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf04114g02038.1	sp|Q8S8W5|CEMA_ATRBE	****	Chloroplast envelope membrane protein	IPR004282 (Chloroplast envelope membrane protein, CemA)	GO:0016021 (integral component of membrane)
Niben101Scf02909g02011.1	AT4G16580.1	***-	Protein phosphatase 2C family protein LENGTH=467	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf00762g00016.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf01013g08020.1	emb|CDY23016.1|	*-*-	BnaC07g31710D [Brassica napus]	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf04488g00025.1	sp|Q54BW6|TTC27_DICDI	*-*-	Tetratricopeptide repeat protein 27 homolog		
Niben101Scf07428g02030.1	gb|AFW74481.1|	***-	ATP binding protein [Zea mays]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02982g03001.1	sp|Q9H0Z9|RBM38_HUMAN	*-**	RNA-binding protein 38	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01227g04016.1	gb|KEH22373.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283), IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf03488g06002.1	sp|Q9QZH4|AAKB2_RAT	--*-	5'-AMP-activated protein kinase subunit beta-2	IPR014756 (Immunoglobulin E-set)	
Niben101Scf02802g00012.1			Unknown protein		
Niben101Scf02354g02008.1	sp|Q8LEM8|RL373_ARATH	*-*-	60S ribosomal protein L37-3	IPR001569 (Ribosomal protein L37e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07951g02027.1	AT3G08740.1	****	elongation factor P (EF-P) family protein LENGTH=236	IPR011768 (Translation elongation factor P)	GO:0003746 (translation elongation factor activity), GO:0005737 (cytoplasm), GO:0006414 (translational elongation), GO:0043043 (peptide biosynthetic process)
Niben101Scf02216g02019.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf09452g01014.1	sp|Q3M6H4|PROB_ANAVT	****	Glutamate 5-kinase	IPR001048 (Aspartate/glutamate/uridylate kinase), IPR001057 (Glutamate/acetylglutamate kinase)	GO:0004349 (glutamate 5-kinase activity), GO:0006561 (proline biosynthetic process)
Niben101Scf06779g00007.1	sp|Q9ZSK2|ADF6_ARATH	****	Actin-depolymerizing factor 6	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf02636g00004.1	AT1G22110.1	*-*-	structural constituent of ribosome LENGTH=282	IPR021410 (The fantastic four family)	
Niben101Scf00033g07004.1			Unknown protein		
Niben101Scf02420g08010.1	sp|Q6L545|GID1_ORYSJ	--*-	Gibberellin receptor GID1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf02398g00005.1	sp|Q0WNR2|BH090_ARATH	***-	Transcription factor bHLH90	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf02572g02019.1	emb|CDX97730.1|	***-	BnaA05g23490D [Brassica napus]		
Niben101Scf03072g06004.1	sp|Q9CZT4|RPC5_MOUSE	*-**	DNA-directed RNA polymerase III subunit RPC5	IPR006886 (DNA-directed RNA polymerase III subunit Rpc5)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf04205g04005.1	gb|KEH36771.1|	--*-	heavy metal transport/detoxification domain protein [Medicago truncatula]		
Niben101Scf22015g02048.1	AT1G01500.1	***-	Erythronate-4-phosphate dehydrogenase family protein LENGTH=327		
Niben101Scf05811g08010.1	sp|P93194|RPK1_IPONI	****	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf27753g00001.1	ref|WP_001985206.1|	***-	thiaminase [Bacillus cereus] gb|EDX54743.1| putative transcriptional activator TenA [Bacillus cereus W]	IPR016084 (Haem oxygenase-like, multi-helical)	
Niben101Scf08272g00008.1	sp|Q9FLS0|FB253_ARATH	*-*-	F-box protein		
Niben101Scf05669g00005.1	emb|CDX70870.1|	***-	BnaC03g09540D [Brassica napus]		
Niben101Scf00919g01003.1	sp|O23310|NFYB3_ARATH	****	Nuclear transcription factor Y subunit B-3	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf07146g00005.1	ref|YP_006291825.1|	--*-	orf57 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81202.1| orf57 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf01897g07006.1	sp|O49686|PYR1_ARATH	***-	Abscisic acid receptor PYR1	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf03046g02013.1	sp|D8VPP5|AL11A_OLEEU	*-**	Pectinesterase 1	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02445g10019.1	ref|XP_007044586.1|	*-*-	Serine/threonine-protein kinase WNK-related [Theobroma cacao] gb|EOY00418.1| Serine/threonine-protein kinase WNK-related [Theobroma cacao]	IPR025610 (Transcription factor MYC/MYB N-terminal)	
Niben101Scf04980g00021.1	AT2G35490.1	***-	Plastid-lipid associated protein PAP / fibrillin family protein LENGTH=376	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf04869g05004.1			Unknown protein		
Niben101Scf03295g07007.1	ref|NP_001233978.1|	*-*-	extensin-like protein Dif54 precursor [Solanum lycopersicum] emb|CAA67814.1| extensin-like protein Dif54 [Solanum lycopersicum]		
Niben101Scf01063g02021.1			Unknown protein		
Niben101Scf05186g00005.1			Unknown protein		
Niben101Scf20512g01012.1	gb|AIE43876.1|	*-*-	WRKY transcription factor 100 [Gossypium hirsutum]		
Niben101Scf04995g07021.1	emb|CDY71805.1|	***-	BnaA10g28570D [Brassica napus]		
Niben101Scf00024g03019.1	sp|Q9STS6|LBD27_ARATH	*-*-	LOB domain-containing protein 27	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf02941g01005.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06677g00003.1	sp|P42735|CDI8_ARATH	***-	Cadmium-induced protein AS8		
Niben101Scf01958g02007.1			Unknown protein		
Niben101Scf03906g01002.1	sp|A4FV84|MRT4_BOVIN	***-	mRNA turnover protein 4 homolog	IPR001790 (Ribosomal protein L10/acidic P0)	GO:0005622 (intracellular), GO:0042254 (ribosome biogenesis)
Niben101Scf02471g01008.1	sp|B0TBN6|NDK_HELMI	****	Nucleoside diphosphate kinase	IPR001564 (Nucleoside diphosphate kinase)	GO:0004550 (nucleoside diphosphate kinase activity), GO:0005524 (ATP binding), GO:0006165 (nucleoside diphosphate phosphorylation), GO:0006183 (GTP biosynthetic process), GO:0006228 (UTP biosynthetic process), GO:0006241 (CTP biosynthetic process)
Niben101Scf01374g15026.1	sp|Q9LFC5|PP360_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf17831g01010.1	emb|CDY07388.1|	*-*-	BnaA07g24670D [Brassica napus]		
Niben101Scf11605g00002.1	ref|XP_007010390.1|	*-*-	Retrotransp [Theobroma cacao]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf08199g02020.1	ref|XP_007028188.1|	***-	S-aden isoform 1 [Theobroma cacao]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf08753g02037.1	sp|Q1BYW4|PUR5_BURCA	****	Phosphoribosylformylglycinamidine cyclo-ligase	IPR004733 (Phosphoribosylformylglycinamidine cyclo-ligase), IPR016188 (PurM, N-terminal-like)	GO:0003824 (catalytic activity), GO:0004641 (phosphoribosylformylglycinamidine cyclo-ligase activity), GO:0005737 (cytoplasm), GO:0006189 ('de novo' IMP biosynthetic process)
Niben101Ctg14915g00004.1	AT1G51580.1	****	RNA-binding KH domain-containing protein LENGTH=621	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf04100g00014.1	AT2G34380.1	*-*-	Putative adipose-regulatory protein (Seipin) LENGTH=509	IPR009617 (Adipose-regulatory protein, Seipin)	
Niben101Scf18871g00004.1	sp|Q5JNJ5|ENL1_ORYSJ	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf14996g00010.1	AT5G03490.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=465	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf09004g00003.1	sp|Q9C5I3|ERF76_ARATH	*-**	Ethylene-responsive transcription factor 11	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06113g00012.1	ref|WP_014109590.1|	--*-	branched-chain amino acid aminotransferase-like protein [Glaciecola nitratireducens] ref|YP_004872710.1| branched-chain amino acid aminotransferase-like protein [Glaciecola nitratireducens FR1064] gb|AEP30717.1| branched-chain amino acid aminotransferase-like protein [Glaciecola nitratireducens FR1064]		
Niben101Scf01817g02029.1	sp|Q6NQB7|B3GT7_ARATH	*-**	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf04184g02003.1	sp|Q9FJI1|KAD6_ARATH	****	Adenylate kinase isoenzyme 6 homolog	IPR020618 (Adenylate kinase isoenzyme 6), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004017 (adenylate kinase activity), GO:0005524 (ATP binding)
Niben101Scf00793g05001.1	sp|O22901|BH151_ARATH	***-	Transcription factor UPBEAT1		
Niben101Scf00247g01007.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf04899g05004.1	sp|P56820|EIF3D_ARATH	****	Eukaryotic translation initiation factor 3 subunit D	IPR007783 (Eukaryotic translation initiation factor 3 subunit D)	GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf03374g09003.1	sp|Q9LUM1|LOR11_ARATH	***-	Protein LURP-one-related 11	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf09248g03002.1	sp|Q37192|RBL_BARSO	*-**	Ribulose bisphosphate carboxylase large chain	IPR017443 (Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf00143g02023.1	AT1G55020.1	*-*-	lipoxygenase 1 LENGTH=859	IPR000907 (Lipoxygenase), IPR027433 (Lipoxygenase, domain 3)	GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02437g00011.1	AT3G50660.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07516g00005.1	AT4G00570.1	****	NAD-dependent malic enzyme 2 LENGTH=607	IPR001891 (Malic oxidoreductase)	GO:0004470 (malic enzyme activity), GO:0004471 (malate dehydrogenase (decarboxylating) (NAD+) activity), GO:0006108 (malate metabolic process), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03689g01012.1	ref|XP_007046505.1|	*-*-	Transducin/WD40 repeat-like superfamily protein isoform 3 [Theobroma cacao] gb|EOX90662.1| Transducin/WD40 repeat-like superfamily protein isoform 3 [Theobroma cacao]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00410g00006.1	AT5G24240.1	***-	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein LENGTH=574	IPR011009 (Protein kinase-like domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf03953g02015.1	gb|AAB82730.1|	***-	orf154 [Petunia x hybrida]		
Niben101Scf11264g01004.1	AT5G57100.1	***-	Nucleotide/sugar transporter family protein LENGTH=390	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf04117g03002.1	ref|XP_003602846.1|	--*-	Blue copper protein [Medicago truncatula] gb|AES73097.1| plastocyanin-like domain protein [Medicago truncatula]	IPR008972 (Cupredoxin)	
Niben101Scf04103g10003.1	sp|Q92804|RBP56_HUMAN	*-**	TATA-binding protein-associated factor 2N	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf07320g00022.1	sp|P92961|PROT1_ARATH	*-*-	Proline transporter 1	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf01998g03011.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf15965g00015.1	sp|B6I6Q4|FADJ_ECOSE	****	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain), IPR018376 (Enoyl-CoA hydratase/isomerase, conserved site), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0003857 (3-hydroxyacyl-CoA dehydrogenase activity), GO:0006631 (fatty acid metabolic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02816g02003.1	sp|Q9ZQE5|PP153_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07113g00016.1	sp|Q4L3G8|FTSH_STAHJ	--**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf05296g00007.1	sp|Q84JU6|HOS1_ARATH	***-	E3 ubiquitin-protein ligase HOS1	IPR001841 (Zinc finger, RING-type), IPR025151 (ELYS-like domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01768g04012.1	sp|Q2TBQ8|6PGL_BOVIN	*-*-	6-phosphogluconolactonase	IPR006148 (Glucosamine/galactosamine-6-phosphate isomerase)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf10144g01025.1	sp|O36363|DPOL_ALHV1	*-**	DNA polymerase catalytic subunit	IPR006172 (DNA-directed DNA polymerase, family B), IPR023211 (DNA polymerase, palm domain), IPR025687 (C4-type zinc-finger of DNA polymerase delta)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity)
Niben101Scf05118g11015.1	sp|Q41073|NLTP_PINTA	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf06221g04012.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf02929g03017.1	sp|P51428|RT10_PEA	***-	Ribosomal protein S10, mitochondrial		
Niben101Scf06739g01008.1	AT1G19240.1	*-*-	unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=104		
Niben101Scf11291g01005.1	sp|Q8BW49|TTC12_MOUSE	--*-	Tetratricopeptide repeat protein 12	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05848g04018.1	sp|Q9FI80|PP425_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07323g01002.1	sp|Q9CAL2|CRK3_ARATH	*-**	Cysteine-rich receptor-like protein kinase 3	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00293g09002.1	sp|A9VTL9|MNMG_BACWK	****	tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG	IPR002218 (Glucose-inhibited division protein A-related), IPR026904 (GidA associated domain 3)	GO:0002098 (tRNA wobble uridine modification), GO:0008033 (tRNA processing), GO:0050660 (flavin adenine dinucleotide binding)
Niben101Scf00269g00010.1	sp|O23262|RLF32_ARATH	***-	Protein RALF-like 32	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf02613g02022.1	sp|Q0IIJ0|NAA50_BOVIN	****	N-alpha-acetyltransferase 50	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf27539g00001.1	gb|AFI44296.1|	****	transport membrane protein, partial (mitochondrion) [Silene vulgaris]	IPR002033 (Sec-independent periplasmic protein translocase TatC)	GO:0016021 (integral component of membrane)
Niben101Scf07798g03008.1	sp|Q94AU2|SEC22_ARATH	****	25.3 kDa vesicle transport protein	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf10219g00025.1	sp|P19963|ALL1_OLEEU	***-	Major pollen allergen Ole e 1	IPR006041 (Pollen Ole e 1 allergen/extensin)	GO:0005615 (extracellular space)
Niben101Scf02494g00003.1	AT4G25250.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=199	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf16863g00001.1	AT2G07771.2	*-*-	Cytochrome C assembly protein LENGTH=256		
Niben101Scf01918g03002.1	sp|Q9SXD8|PPR90_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf10396g01017.1	sp|Q94K41|SDR3B_ARATH	****	Short-chain dehydrogenase reductase 3b	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02790g05022.1	tpg|DAA48790.1|	*-*-	TPA: MTD1 [Zea mays]		
Niben101Scf03819g01013.1	AT3G29180.1	***-	Protein of unknown function (DUF1336) LENGTH=513	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf01022g03007.1			Unknown protein		
Niben101Scf09458g01002.1	gb|AID21636.1|	--*-	At4g21420p-like protein [Arabidopsis lyrata]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf03645g02006.1	sp|Q42510|GNOM_ARATH	****	ARF guanine-nucleotide exchange factor GNOM	IPR000904 (Sec7 domain), IPR016024 (Armadillo-type fold), IPR023394 (Sec7 domain, alpha orthogonal bundle)	GO:0005086 (ARF guanyl-nucleotide exchange factor activity), GO:0005488 (binding), GO:0032012 (regulation of ARF protein signal transduction)
Niben101Scf14781g00013.1	sp|Q84MA2|IP5P1_ARATH	*-*-	Type I inositol 1,4,5-trisphosphate 5-phosphatase 1	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf09709g01012.1	AT3G18380.2	***-	sequence-specific DNA binding transcription factors;sequence-specific DNA binding LENGTH=349		
Niben101Scf01155g02007.1			Unknown protein		
Niben101Scf01093g04004.1	AT1G08590.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1029	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf03971g00014.1	AT1G26610.1	***-	C2H2-like zinc finger protein LENGTH=455	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Ctg06116g00002.1	ref|XP_007048399.1|	***-	GDP-mannose transporter, putative [Theobroma cacao] gb|EOX92556.1| GDP-mannose transporter, putative [Theobroma cacao]	IPR019379 (Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit)	
Niben101Scf32851g00016.1	sp|Q9QZH7|FXL20_RAT	*-*-	F-box/LRR-repeat protein 20	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf00873g01015.1	sp|Q5JNJ5|ENL1_ORYSJ	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf02289g10027.1	sp|Q9VP22|CDK12_DROME	*-**	Cyclin-dependent kinase 12	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00577g02017.1	AT1G13340.1	*-*-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=409	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf03507g01007.1	emb|CDY49793.1|	-**-	BnaCnng18060D [Brassica napus]		
Niben101Scf00421g01021.1	AT1G63940.2	****	monodehydroascorbate reductase 6 LENGTH=493	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01721g06008.1	sp|Q9SPM5|APY2_ARATH	***-	Apyrase 2	IPR000407 (Nucleoside phosphatase GDA1/CD39)	GO:0016787 (hydrolase activity)
Niben101Scf00735g06023.1	AT2G41835.1	****	zinc finger (C2H2 type, AN1-like) family protein LENGTH=279	IPR000058 (Zinc finger, AN1-type), IPR015880 (Zinc finger, C2H2-like)	GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf03114g09024.1	sp|A4W577|GHRB_ENT38	--**	Glyoxylate/hydroxypyruvate reductase B	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04558g02002.1	AT5G20990.1	****	molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) LENGTH=670	IPR001453 (Molybdopterin binding domain), IPR005110 (MoeA, N-terminal and linker domain), IPR005111 (MoeA, C-terminal, domain IV)	GO:0006777 (Mo-molybdopterin cofactor biosynthetic process), GO:0032324 (molybdopterin cofactor biosynthetic process)
Niben101Scf01166g01016.1	ref|XP_002529925.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF32479.1| conserved hypothetical protein [Ricinus communis]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf02907g07024.1	ref|XP_003628884.1|	*-**	RNA methyltransferase-like protein [Medicago truncatula]	IPR029028 (Alpha/beta knot methyltransferases)	GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0008173 (RNA methyltransferase activity)
Niben101Scf03657g08005.1	sp|P61242|YCF2_SOLLC	--*-	Protein Ycf2		
Niben101Scf10441g01006.1	AT5G17540.1	****	HXXXD-type acyl-transferase family protein LENGTH=461	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04722g04014.1	AT5G01450.1	***-	RING/U-box superfamily protein LENGTH=444	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf16824g00009.1	sp|Q7T3I7|RBM38_XENLA	*-**	RNA-binding protein 38	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01847g03002.1	sp|Q8N8Q9|NIPA2_HUMAN	****	Magnesium transporter NIPA2	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf14269g00007.1	sp|Q5M782|RIPB_XENLA	***-	RPA-interacting protein B	IPR028155 (RPA-interacting protein, central domain), IPR028156 (RPA-interacting protein), IPR028158 (RPA-interacting protein, N-terminal domain), IPR028159 (RPA-interacting protein, C-terminal domain)	
Niben101Scf01147g01006.1	sp|Q9LV40|ROGF8_ARATH	****	Rho guanine nucleotide exchange factor 8	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf01704g02002.1	AT4G02100.1	***-	Heat shock protein DnaJ with tetratricopeptide repeat LENGTH=546	IPR001623 (DnaJ domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00854g04019.1			Unknown protein		
Niben101Scf01478g05014.1			Unknown protein		
Niben101Scf04940g00011.1	sp|Q42134|PSA5B_ARATH	***-	Proteasome subunit alpha type-5-B	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf03915g00008.1	sp|Q9FXA4|PUB26_ARATH	***-	U-box domain-containing protein 26	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf01866g03014.1	ref|XP_007016530.1|	***-	TOX high mobility group box family member 4-A, putative isoform 1 [Theobroma cacao] gb|EOY34149.1| TOX high mobility group box family member 4-A, putative isoform 1 [Theobroma cacao]	IPR012862 (Protein of unknown function DUF1635)	
Niben101Scf02085g12017.1	gb|KFG86632.1|	***-	vesicle-mediated transporter Vid24 [Metarhizium anisopliae]	IPR018618 (Vacuolar import/degradation protein Vid24)	
Niben101Scf00596g01008.1	AT5G12180.1	****	calcium-dependent protein kinase 17 LENGTH=528	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf17324g00004.1	AT4G09670.1	****	Oxidoreductase family protein LENGTH=362	IPR016040 (NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity)
Niben101Scf00272g09012.1	sp|Q5ZLL6|MSMO1_CHICK	*-*-	Methylsterol monooxygenase 1	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00603g04009.1			Unknown protein		
Niben101Scf02174g00014.1	AT3G24240.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf35572g01018.1	AT1G04020.1	***-	breast cancer associated RING 1 LENGTH=714	IPR001965 (Zinc finger, PHD-type), IPR011364 (Breast cancer type 1 susceptibility protein (BRCA1))	GO:0003677 (DNA binding), GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0008270 (zinc ion binding)
Niben101Scf09445g03006.1	sp|B7J4D8|PNP_ACIF2	*-*-	Polyribonucleotide nucleotidyltransferase	IPR015847 (Exoribonuclease, phosphorolytic domain 2), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027408 (PNPase/RNase PH domain)	
Niben101Scf00473g00003.1	sp|Q47EN5|ISCS_DECAR	--*-	Cysteine desulfurase IscS	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00618g01019.1	sp|D4GYV5|SUFS_HALVD	*-*-	Cysteine desulfurase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00557g00003.1	sp|P41151|HFA1A_ARATH	*-**	Heat stress transcription factor A-1a	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf11515g00016.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01656g00009.1	ref|WP_023508058.1|	****	membrane protease subunit stomatin/prohibitin-like protein [Rickettsia monacensis] emb|CDI29842.1| membrane protease subunit stomatin/prohibitin-like protein [Rickettsia monacensis IrR/Munich]	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf01773g02004.1	sp|B4N9D3|WRNXO_DROWI	--*-	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf04220g03001.1	sp|Q9FKM5|XRCC3_ARATH	****	DNA repair protein XRCC3 homolog	IPR013632 (DNA recombination and repair protein Rad51, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0008094 (DNA-dependent ATPase activity)
Niben101Scf02564g01015.1	sp|P36917|XYNA_THESA	*-*-	Endo-1,4-beta-xylanase A	IPR008979 (Galactose-binding domain-like)	GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf10464g00005.1	sp|Q13310|PABP4_HUMAN	****	Polyadenylate-binding protein 4	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02074g04068.1	ref|XP_007099506.1|	--*-	Retrotransp [Theobroma cacao]		
Niben101Scf04653g03006.1	sp|Q9SR92|STR10_ARATH	--*-	Rhodanese-like domain-containing protein 10		
Niben101Scf06623g00010.1	AT1G68260.1	***-	Thioesterase superfamily protein LENGTH=190	IPR029069 (HotDog domain)	
Niben101Scf22260g00004.1	sp|Q9D3E6|STAG1_MOUSE	*-*-	Cohesin subunit SA-1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02074g04069.1	sp|A5FFP4|Y2955_FLAJ1	-**-	Maf-like protein Fjoh_2955		
Niben101Scf03507g03009.1	AT3G21690.1	***-	MATE efflux family protein LENGTH=506	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf11980g01002.1	gb|AES62805.2|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf03705g00015.1	gb|KEH30575.1|	*-*-	MAP kinase kinase kinase [Medicago truncatula]		
Niben101Scf00819g11006.1	sp|Q9LYL9|Y3623_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf00542g02004.1	AT5G18030.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=88	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01580g02014.1	sp|P31115|PUS3_YEAST	*-**	tRNA pseudouridine(38/39) synthase	IPR001406 (Pseudouridine synthase I, TruA), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Ctg14544g00001.1	emb|CDY66412.1|	--*-	BnaCnng50740D [Brassica napus]	IPR026960 (Reverse transcriptase zinc-binding domain)	
Niben101Scf09107g00003.1			Unknown protein		
Niben101Scf02904g00012.1	sp|Q8GY42|NAC25_ARATH	*-**	NAC transcription factor 25	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf39395g00004.1	sp|Q9JZ77|RIBB_NEIMB	****	3,4-dihydroxy-2-butanone 4-phosphate synthase	IPR000422 (3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB), IPR000926 (GTP cyclohydrolase II, RibA), IPR016299 (Riboflavin biosynthesis protein RibBA)	GO:0003935 (GTP cyclohydrolase II activity), GO:0008686 (3,4-dihydroxy-2-butanone-4-phosphate synthase activity), GO:0009231 (riboflavin biosynthetic process)
Niben101Scf01866g02015.1	sp|O43502|RA51C_HUMAN	****	DNA repair protein RAD51 homolog 3	IPR013632 (DNA recombination and repair protein Rad51, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0008094 (DNA-dependent ATPase activity)
Niben101Scf35572g01017.1	sp|Q9FNL7|PTR3_ARATH	***-	Protein NRT1/ PTR FAMILY 5.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf04528g09007.1	sp|Q9C5E5|DGK5_ARATH	*-**	Diacylglycerol kinase 5	IPR001206 (Diacylglycerol kinase, catalytic domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf04728g00012.1			Unknown protein		
Niben101Scf02837g01015.1	gb|KEZ86104.1|	***-	Holliday junction resolvase [Clostridium sulfidigenes]	IPR005227 (Resolvase, holliday junction-type, YqgF-like), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005737 (cytoplasm), GO:0006139 (nucleobase-containing compound metabolic process), GO:0006281 (DNA repair), GO:0006310 (DNA recombination), GO:0006974 (cellular response to DNA damage stimulus), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf22954g00004.1	sp|O82147|SPDE_COFAR	--*-	Spermidine synthase	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00005g01008.1	sp|Q6NRY2|NOL6_XENLA	***-	Nucleolar protein 6	IPR005554 (Nrap protein)	
Niben101Scf01046g03010.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf02074g06077.1	gb|ADT62143.1|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Isoetes engelmannii]		
Niben101Scf05692g04002.1	sp|Q9FLP6|SUMO2_ARATH	***-	Small ubiquitin-related modifier 2	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf03396g07032.1	sp|Q6PFJ9|ARI1_DANRE	*-*-	E3 ubiquitin-protein ligase arih1	IPR001876 (Zinc finger, RanBP2-type), IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01750g08007.1			Unknown protein		
Niben101Scf07428g01005.1	sp|P49199|RS8_ORYSJ	***-	40S ribosomal protein S8	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07576g02009.1	sp|P92949|FRO2_ARATH	****	Ferric reduction oxidase 2	IPR013121 (Ferric reductase, NAD binding), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017927 (Ferredoxin reductase-type FAD-binding domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08208g04009.1			Unknown protein		
Niben101Scf11175g00006.1	dbj|BAD66730.1|	***-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf06077g01022.1	AT2G17530.1	****	Protein kinase superfamily protein LENGTH=440	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01858g01007.1			Unknown protein		
Niben101Scf08772g03010.1	sp|Q9LVX1|C3H41_ARATH	***-	Zinc finger CCCH domain-containing protein 41	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf03403g03016.1	ref|WP_027832499.1|	*-*-	mechanosensitive ion channel protein MscS [Marinobacter sp. HL-58]	IPR006685 (Mechanosensitive ion channel MscS), IPR010920 (Like-Sm (LSM) domain)	GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf04909g01001.1			Unknown protein		
Niben101Scf02328g00014.1	sp|Q9M907|PP217_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01650g00014.1	gb|AAM47025.1|	*-*-	nam-like protein 1 [Petunia x hybrida]		
Niben101Scf11535g01030.1	ref|WP_026032496.1|	*-*-	TenA family transcriptional regulator [Prochlorococcus sp. W7]	IPR016084 (Haem oxygenase-like, multi-helical), IPR023214 (HAD-like domain)	
Niben101Scf01012g04003.1			Unknown protein		
Niben101Scf13183g00007.1	ref|XP_007027791.1|	*-*-	GATA zinc finger domain-containing protein C1393.08 isoform 1 [Theobroma cacao] gb|EOY08293.1| GATA zinc finger domain-containing protein C1393.08 isoform 1 [Theobroma cacao]		
Niben101Scf03894g03002.1	sp|P53124|PCL10_YEAST	--*-	PHO85 cyclin-10		
Niben101Scf03116g04001.1	AT3G02120.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=126		
Niben101Scf12232g00001.1	sp|Q13164|MK07_HUMAN	*-**	Mitogen-activated protein kinase 7	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01804g00038.1	ref|YP_002608396.1|	***-	orf86 [Vitis vinifera] emb|CAQ77655.1| orf86 [Vitis vinifera] gb|ACS15212.1| ORF86 [Vitis vinifera]		
Niben101Scf21468g00005.1	emb|CAQ58617.1|	****	transferase, transferring glycosyl groups / unknown protein [Vitis vinifera]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf02816g16028.1	sp|O14343|KLP5_SCHPO	*-**	Kinesin-like protein 5	IPR001752 (Kinesin motor domain), IPR016024 (Armadillo-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf02719g00006.1	gb|AAL68641.1|AF458765_1	*-*-	polyprotein [Oryza sativa Japonica Group]		
Niben101Scf14939g01034.1	sp|P92792|TOM20_SOLTU	*-**	Mitochondrial import receptor subunit TOM20	IPR010547 (Plant specific mitochondrial import receptor subunit TOM20)	GO:0005742 (mitochondrial outer membrane translocase complex), GO:0045040 (protein import into mitochondrial outer membrane)
Niben101Scf00735g06024.1	dbj|BAM13304.1|	*-*-	ozone-responsive stress related protein [Oryza officinalis]	IPR009515 (Protein of unknown function DUF1138)	
Niben101Scf01976g00021.1	gb|EWM28206.1|	****	cys met metabolism pyridoxal-phosphate-dependent enzyme [Nannochloropsis gaditana]	IPR000277 (Cys/Met metabolism, pyridoxal phosphate-dependent enzyme), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf06461g09018.1	AT1G19240.1	*-*-	unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=104		
Niben101Scf01623g00014.1	sp|Q55AD9|ARL5_DICDI	*-*-	ADP-ribosylation factor-like protein 5	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00253g01006.1	sp|Q6RZZ9|KIF13_DICDI	*-**	Kinesin-related protein 13	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf08627g00002.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00421g01022.1	AT1G01490.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=177	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf22524g00003.1	gb|AET05388.2|	--*-	dynein light chain type 1 family protein [Medicago truncatula]		
Niben101Scf04418g07001.1	sp|Q9LT79|PUB25_ARATH	***-	U-box domain-containing protein 25	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf02309g03024.1	sp|Q5VJ39|CYB_ARCCA	*-*-	Cytochrome b	IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0016020 (membrane), GO:0022904 (respiratory electron transport chain)
Niben101Scf00757g01001.1	AT3G02120.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=126		
Niben101Scf13525g00015.1	sp|Q0WSN2|DAR2_ARATH	*-*-	Protein DA1-related 2	IPR022087 (Protein DA1 like)	
Niben101Scf05250g02011.1	sp|B1Z033|BETB_BURA4	****	NAD/NADP-dependent betaine aldehyde dehydrogenase	IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf14882g01005.1	sp|P37218|H1_SOLLC	*-*-	Histone H1	IPR005819 (Histone H5)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf02972g00004.1	AT4G11070.1	****	WRKY family transcription factor LENGTH=313	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00927g04014.1	AT1G60140.1	****	trehalose phosphate synthase LENGTH=861	IPR001830 (Glycosyl transferase, family 20), IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf00854g07073.1	sp|Q02211|COX1_PHYME	****	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02429g07033.1	gb|AGL09436.1|	***-	glycine-rich protein, partial [Nymphaea sp. JN-2013]	IPR024491 (Selenoprotein SelK/SelG)	
Niben101Scf00492g03001.1	sp|Q9LSQ4|GH36_ARATH	***-	Indole-3-acetic acid-amido synthetase GH3.6	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf01013g04010.1	emb|CDX74218.1|	*-*-	BnaA03g28290D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf06509g03008.1	sp|O22704|CYP5F_ARATH	*-*-	Cytochrome B5-like protein	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf11177g00001.1	AT4G10955.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=350	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf14397g00004.1	ref|XP_007033409.1|	***-	Sarcolemmal membrane-associated protein, putative isoform 2 [Theobroma cacao] gb|EOY04335.1| Sarcolemmal membrane-associated protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf11178g02005.1	emb|CDX69043.1|	*-*-	BnaC01g04100D [Brassica napus]		
Niben101Scf02537g05005.1	sp|Q9ZPE7|EXO_ARATH	***-	Protein EXORDIUM	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf00986g02016.1			Unknown protein		
Niben101Scf02858g00009.1	sp|Q9ZW85|LEUD3_ARATH	*-*-	3-isopropylmalate dehydratase small subunit 3		
Niben101Scf00448g08001.1	sp|Q84UU9|TPS06_ARATH	*-**	Terpenoid synthase 6	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf02929g03018.1	sp|A0LRU9|FOLD_ACIC1	--*-	Bifunctional protein FolD		
Niben101Scf06221g04013.1	ATMG00090.1	*-**	structural constituent of ribosome;protein binding chrM:25482-28733 REVERSE LENGTH=556	IPR000114 (Ribosomal protein L16), IPR001351 (Ribosomal protein S3, C-terminal), IPR008972 (Cupredoxin), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0005840 (ribosome), GO:0006412 (translation), GO:0016020 (membrane), GO:0019843 (rRNA binding)
Niben101Scf03804g09003.1	ref|WP_017313017.1|	*-*-	glutaredoxin [Fischerella sp. PCC 9339]	IPR008554 (Glutaredoxin-like), IPR012336 (Thioredoxin-like fold)	
Niben101Scf02915g04009.1	sp|Q2QXB2|TLP14_ORYSJ	***-	Tubby-like F-box protein 14	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf06778g06003.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf00897g03004.1	sp|O22960|TBL37_ARATH	*-*-	Protein trichome birefringence-like 37	IPR026057 (PC-Esterase)	
Niben101Scf05618g03003.1	sp|Q9LFW3|COBL4_ARATH	***-	COBRA-like protein 4	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf02583g01003.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf06926g00003.1	AT3G55880.2	*-*-	Alpha/beta hydrolase related protein LENGTH=215	IPR019498 (MENTAL domain)	
Niben101Scf04218g00010.1	sp|Q9S9M8|TLP8_ARATH	***-	Tubby-like protein 8	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf01121g00005.1	sp|Q8L8A7|GRF4_ARATH	***-	Growth-regulating factor 4	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf13962g01016.1	gb|ADX23485.1|	***-	DOG1, partial [Arabidopsis thaliana]	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01009g00009.1	emb|CDX74851.1|	***-	BnaA05g05970D [Brassica napus]		
Niben101Scf04319g03003.1	sp|A0RZC6|VCO32_AUSSU	--*-	A.superbus venom factor 2	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf07516g00006.1	sp|A0QTF8|RMLD_MYCS2	*-*-	dTDP-4-dehydrorhamnose reductase	IPR005913 (dTDP-4-dehydrorhamnose reductase family), IPR029903 (RmlD-like substrate binding domain)	
Niben101Scf04847g02010.1	sp|Q9H330|TM245_HUMAN	*-*-	Transmembrane protein 245	IPR002549 (Uncharacterised protein family UPF0118)	
Niben101Scf03374g09002.1	sp|Q3T042|NOB1_BOVIN	*-*-	RNA-binding protein NOB1	IPR017117 (D-site 20S pre-rRNA nuclease)	
Niben101Scf04434g00008.1	sp|O67475|RIR2_AQUAE	--*-	Ribonucleoside-diphosphate reductase subunit beta		
Niben101Scf00369g11005.1	gb|AGY62829.1|	*-*-	orf123b (mitochondrion) [Eruca vesicaria subsp. sativa]		
Niben101Scf02243g06013.1	gb|AGV54219.1|	****	serine-type peptidase [Phaseolus vulgaris]	IPR000223 (Peptidase S26A, signal peptidase I), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane)
Niben101Scf00486g02007.1	sp|Q8LNW4|FLOT2_ORYSJ	--*-	Flotillin-like protein 2		
Niben101Scf00920g08006.1	sp|Q9FKB5|KRP3_ARATH	****	Cyclin-dependent kinase inhibitor 3	IPR003175 (Cyclin-dependent kinase inhibitor)	GO:0004861 (cyclin-dependent protein serine/threonine kinase inhibitor activity), GO:0005634 (nucleus), GO:0007050 (cell cycle arrest)
Niben101Scf05961g00004.1	emb|CDY28050.1|	-**-	BnaC05g44520D [Brassica napus]		
Niben101Scf14996g00011.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf36703g00005.1	sp|Q9SHB5|WRK55_ARATH	--**	WRKY transcription factor 55	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01625g02007.1	ref|XP_002516263.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF46265.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00438g02013.1	ref|XP_003588337.1|	--*-	Ribosomal protein S10 [Medicago truncatula]		
Niben101Scf02646g03001.1	AT4G11400.1	*-*-	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=573		
Niben101Scf02864g03018.1	gb|AFX95943.1|	***-	green-ripe like protein 1 [Solanum melongena]	IPR008496 (Protein of unknown function DUF778)	
Niben101Scf01167g02004.1	sp|Q9FXH1|PPR52_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00265g02002.1	sp|P83948|PME3_CITSI	****	Pectinesterase 3	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf11105g00011.1	gb|EMT03847.1|	*-*-	70 kDa peptidyl-prolyl isomerase [Aegilops tauschii]		
Niben101Scf18871g00005.1	sp|Q945T0|RALF_TOBAC	***-	Rapid alkalinization factor	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf02367g05030.1	AT1G78310.1	*-*-	VQ motif-containing protein LENGTH=311	IPR008889 (VQ)	
Niben101Scf09548g00002.1	gb|AGT97348.1|	*-*-	EG2771 [Manihot esculenta]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf11071g04001.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf09976g00012.1	AT5G60750.1	*-*-	CAAX amino terminal protease family protein LENGTH=347		
Niben101Scf03030g01002.1	sp|Q9SUD8|PP340_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf09742g00030.1	gb|AES72844.2|	*-*-	O-fucosyltransferase family protein [Medicago truncatula]	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf03990g00002.1	sp|Q9H9V4|RN122_HUMAN	--*-	RING finger protein 122	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07391g04028.1	AT1G46264.1	*-**	heat shock transcription factor B4 LENGTH=348	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02085g17001.1	ref|NP_012629.1|	****	Sfc1p [Saccharomyces cerevisiae S288c] RecName: Full=Succinate/fumarate mitochondrial transporter; AltName: Full=Regulator of acetyl-CoA synthase activity [Saccharomyces cerevisiae S288c] emb|CAA89624.1| ACR1 [Saccharomyces cerevisiae] gb|AAT92943.1| YJR095W [Saccharomyces cerevisiae] gb|EDN63411.1| succinate-fumarate transporter [Saccharomyces cerevisiae YJM789] gb|EDV12833.1| succinate-fumarate transport protein [Saccharomyces cerevisiae RM11-1a] gb|EEU08055.1| Sfc1p [Saccharomyces cerevisiae JAY291] emb|CAY80808.1| Sfc1p [Saccharomyces cerevisiae EC1118] tpg|DAA08880.1| TPA: Sfc1p [Saccharomyces cerevisiae S288c] gb|EGA74293.1| Sfc1p [Saccharomyces cerevisiae AWRI796] gb|EGA82148.1| Sfc1p [Saccharomyces cerevisiae Lalvin QA23] gb|EGA86117.1| Sfc1p [Saccharomyces cerevisiae VL3] gb|EHN06265.1| Sfc1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7] gb|EIW09618.1| Sfc1p [Saccharomyces cerevisiae CEN.PK113-7D] gb|EWG85187.1| Sfc1p [Saccharomyces cerevisiae R008] gb|EWG95186.1| Sfc1p [Saccharomyces cerevisiae R103] gb|AHY79078.1| Sfc1p [Saccharomyces cerevisiae YJM993]	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf01664g00013.1	sp|C0HJB3|MANA_CANEN	****	Alpha-mannosidase	IPR011013 (Galactose mutarotase-like domain), IPR013780 (Glycosyl hydrolase, family 13, all-beta)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006013 (mannose metabolic process), GO:0015923 (mannosidase activity), GO:0030246 (carbohydrate binding)
Niben101Scf31162g00004.1	sp|Q5PQ59|ALKB6_XENLA	***-	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf06876g01037.1	AT5G28050.2	*-*-	Cytidine/deoxycytidylate deaminase family protein LENGTH=204		
Niben101Scf05425g00026.1	sp|P15688.2|NU2M_BETVU	*-*-	RecName: Full=NADH-ubiquinone oxidoreductase chain 2; AltName: Full=NADH dehydrogenase subunit 2 (mitochondrion) [Beta vulgaris] emb|CAA34728.1| NADH:ubiquinone reductase subunit 2 [Beta vulgaris subsp. vulgaris]		
Niben101Scf08338g01010.1	sp|Q27031|HSP70_THEPA	***-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf02487g00001.1	sp|B1L6S7|PSB1_KORCO	****	Proteasome subunit beta 1	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf03289g02004.1	sp|P46279|RPB7_SOYBN	*-*-	DNA-directed RNA polymerase II subunit RPB7	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf02004g00019.1	sp|Q2T9Q7|TCF23_BOVIN	--*-	Transcription factor 23	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03371g01037.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04212g00014.1	sp|Q9ZNT3|ADF5_ARATH	****	Actin-depolymerizing factor 5	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf01154g03004.1	sp|Q9LVG9|Y5600_ARATH	***-	BTB/POZ domain-containing protein	IPR000210 (BTB/POZ-like), IPR013878 (Mo25-like)	GO:0005515 (protein binding)
Niben101Scf08488g02002.1	ref|XP_002531558.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF30824.1| conserved hypothetical protein [Ricinus communis]	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf01738g05001.1	sp|Q9M907|PP217_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01787g00077.1	gb|KEH16365.1|	--*-	mitovirus RNA-dependent RNA polymerase [Medicago truncatula]	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf00944g02005.1	gb|AFW71223.1|	-**-	meiosis 5 [Zea mays]		
Niben101Scf02912g00004.1	sp|Q08069|RS8_MAIZE	***-	40S ribosomal protein S8	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02805g03007.1	sp|Q9ZU49|LPP1_ARATH	***-	Lipid phosphate phosphatase 1	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase), IPR028681 (Lipid phosphate phosphatase, plant)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Scf03525g01010.1	gb|KEH31416.1|	***-	polygalacturonase QRT3-like protein [Medicago truncatula]	IPR011050 (Pectin lyase fold/virulence factor)	
Niben101Scf04624g00012.1	sp|P41099|RLA2_PARAR	*-*-	60S acidic ribosomal protein P2	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf03295g07008.1	sp|Q5RAJ5|STK36_PONAB	*-**	Serine/threonine-protein kinase 36	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04773g00007.1	sp|Q84MC7|PYL9_ARATH	***-	Abscisic acid receptor PYL9	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf15308g00001.1	sp|Q1GBJ9|RL15_LACDA	****	50S ribosomal protein L15	IPR005749 (Ribosomal protein L15, bacterial-type), IPR021131 (Ribosomal protein L18e/L15P)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf05828g00015.1	gb|KEH36752.1|	*-*-	plant phospholipase-like protein [Medicago truncatula]	IPR007942 (Phospholipase-like)	
Niben101Scf17274g00001.1	sp|Q2MIK1|ATPF_SOLBU	****	ATP synthase subunit b, chloroplastic	IPR002146 (ATPase, F0 complex, subunit B/B', bacterial/chloroplast)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf10228g01003.1	sp|Q6ZSG1|RN165_HUMAN	--*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05782g00008.1	sp|Q05967|PGLR_TOBAC	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00274g01001.1	AT3G23920.1	****	beta-amylase 1 LENGTH=575	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf07880g01007.1	sp|Q94EG9|ZIP11_ARATH	*-*-	Zinc transporter 11		
Niben101Scf03015g03009.1	ref|WP_032520159.1|	****	30S rib PSRP-3 [Prochlorococcus marinus str. SB]	IPR006924 (Ribosomal protein PSRP-3/Ycf65)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02408g04018.1	sp|Q83M39|AES_SHIFL	*-*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01005g10006.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf05822g06022.1	sp|Q5ZMJ9|SRRM1_CHICK	*-*-	Serine/arginine repetitive matrix protein 1	IPR002483 (PWI domain)	GO:0006397 (mRNA processing)
Niben101Scf07353g02004.1	ref|WP_025955230.1|	--*-	MULTISPECIES: TenA family transcriptional regulator [Prochlorococcus]	IPR016084 (Haem oxygenase-like, multi-helical)	
Niben101Scf10448g01016.1	gb|ABF93459.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR018996 (Inner nuclear membrane protein MAN1)	GO:0005639 (integral component of nuclear inner membrane)
Niben101Scf03824g00002.1	AT3G23090.1	***-	TPX2 (targeting protein for Xklp2) protein family LENGTH=338	IPR027329 (TPX2, C-terminal domain)	
Niben101Scf05444g04004.1	sp|Q653H7|ARFR_ORYSJ	****	Auxin response factor 18	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf00315g00020.1	sp|Q3SZV6|TIM21_BOVIN	*-**	Mitochondrial import inner membrane translocase subunit Tim21	IPR013261 (Mitochondrial import inner membrane translocase subunit Tim21)	GO:0005744 (mitochondrial inner membrane presequence translocase complex), GO:0030150 (protein import into mitochondrial matrix)
Niben101Ctg15182g00002.1	AT5G01840.1	*-*-	ovate family protein 1 LENGTH=270	IPR006458 (Ovate  protein family, C-terminal), IPR025830 (DNA-binding domain, ovate family-like)	GO:0003677 (DNA binding)
Niben101Scf07244g01007.1	gb|AES64035.2|	****	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf02816g07009.1	AT4G29510.1	****	arginine methyltransferase 11 LENGTH=390	IPR010456 (Ribosomal L11 methyltransferase, PrmA), IPR025799 (Protein arginine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005737 (cytoplasm), GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity), GO:0008276 (protein methyltransferase activity)
Niben101Scf18000g00026.1	sp|C3K053|LLDD_PSEFS	***-	L-lactate dehydrogenase	IPR012133 (Alpha-hydroxy acid dehydrogenase, FMN-dependent), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01036g03007.1	AT4G03520.1	*-*-	Thioredoxin superfamily protein LENGTH=186	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03191g01011.1			Unknown protein		
Niben101Scf02849g07012.1	sp|O23181|PLP3_ARATH	***-	Patatin-like protein 3	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf13029g01020.1	sp|Q7PC87|AB34G_ARATH	*-*-	ABC transporter G family member 34	IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	
Niben101Scf02194g01005.1	sp|Q6EP49|MAD27_ORYSJ	****	MADS-box transcription factor 27	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03363g01001.1	emb|CDX89594.1|	***-	BnaC04g36130D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf09409g02014.1	sp|O82567|AAPT1_ARATH	***-	Choline/ethanolaminephosphotransferase 1	IPR000462 (CDP-alcohol phosphatidyltransferase)	GO:0008654 (phospholipid biosynthetic process), GO:0016020 (membrane), GO:0016780 (phosphotransferase activity, for other substituted phosphate groups)
Niben101Scf06172g01003.1	sp|Q8L4D8|IQD31_ARATH	***-	Protein IQ-DOMAIN 31	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf02767g04006.1	sp|O64791|SY124_ARATH	*-*-	Syntaxin-124		
Niben101Scf04182g03005.1	AT3G48670.1	***-	XH/XS domain-containing protein LENGTH=647	IPR005380 (XS domain), IPR005381 (Zinc finger-XS domain)	GO:0031047 (gene silencing by RNA)
Niben101Scf04385g00008.1	sp|Q9LV77|ASNS2_ARATH	--*-	Asparagine synthetase [glutamine-hydrolyzing] 2	IPR024286 (Domain of unknown function DUF3700), IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf02749g05036.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf00557g03013.1	AT2G17740.1	***-	Cysteine/Histidine-rich C1 domain family protein LENGTH=248	IPR011424 (C1-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07531g00010.1	AT1G63430.2	****	Leucine-rich repeat protein kinase family protein LENGTH=688	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004713 (protein tyrosine kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12197g02004.1	ref|XP_007020806.1|	***-	SH3 domain-binding protein 1, putative [Theobroma cacao] gb|EOY12331.1| SH3 domain-binding protein 1, putative [Theobroma cacao]		
Niben101Scf02763g04003.1	AT3G21465.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=388		
Niben101Scf07482g01013.1	sp|Q9TM10|MENB_CYACA	--*-	1,4-dihydroxy-2-naphthoyl-CoA synthase	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03077g03003.1	AT5G43140.1	****	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein LENGTH=254	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf05183g06006.1	sp|F4IXW2|BIG5_ARATH	*-*-	Brefeldin A-inhibited guanine nucleotide-exchange protein 5		
Niben101Scf04664g02002.1	AT4G34660.1	***-	SH3 domain-containing protein LENGTH=368	IPR001452 (SH3 domain), IPR027267 (Arfaptin homology (AH) domain/BAR domain)	GO:0005515 (protein binding)
Niben101Scf03274g02001.1	sp|Q4WVU5|PPIL2_ASPFU	*-**	Peptidyl-prolyl cis-trans isomerase-like 2	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf02240g04006.1	emb|CDX71142.1|	*-*-	BnaC03g12260D [Brassica napus]		
Niben101Scf05467g04001.1	sp|P42731|PABP2_ARATH	*-**	Polyadenylate-binding protein 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07720g00023.1	ref|WP_030962028.1|	--*-	peptidase [Streptomyces sp. NRRL S-378]	IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity)
Niben101Scf10384g02005.1	sp|Q9BPL7|ENO2_TOXGO	***-	Enolase 2	IPR000941 (Enolase), IPR029017 (Enolase N-terminal domain-like), IPR029065 (Enolase C-terminal domain-like)	GO:0000015 (phosphopyruvate hydratase complex), GO:0000287 (magnesium ion binding), GO:0004634 (phosphopyruvate hydratase activity), GO:0006096 (glycolytic process)
Niben101Scf05549g02005.1	AT2G04030.1	***-	Chaperone protein htpG family protein LENGTH=780	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf00878g04011.1	sp|Q1BM38|MDH_BURCA	****	Malate dehydrogenase	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf08001g02017.1	sp|O80977|VSR3_ARATH	***-	Vacuolar-sorting receptor 3	IPR001881 (EGF-like calcium-binding domain), IPR003137 (Protease-associated domain, PA), IPR026823 (Complement Clr-like EGF domain)	GO:0005509 (calcium ion binding)
Niben101Scf07868g00001.1	emb|CDY66962.1|	***-	BnaC01g43480D [Brassica napus]		
Niben101Scf04195g01002.1	sp|P12311|ADH1_GEOSE	***-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03326g02004.1	AT2G26150.1	*-**	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00324g02002.1	AT4G23895.1	*-*-	Pleckstrin homology (PH) domain-containing protein LENGTH=247		
Niben101Scf08592g01016.1	AT5G04670.1	***-	Enhancer of polycomb-like transcription factor protein LENGTH=766	IPR019542 (Enhancer of polycomb-like, N-terminal), IPR024943 (Enhancer of polycomb protein)	GO:0032777 (Piccolo NuA4 histone acetyltransferase complex), GO:0035267 (NuA4 histone acetyltransferase complex)
Niben101Scf00987g00004.1	AT4G14340.1	****	casein kinase I LENGTH=457	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03450g02023.1	sp|Q99PE2|ANRA2_MOUSE	--*-	Ankyrin repeat family A protein 2	IPR003903 (Ubiquitin interacting motif), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf10150g04001.1	AT3G26330.1	***-	cytochrome P450, family 71, subfamily B, polypeptide 37 LENGTH=500	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04600g00005.1	sp|Q39950|NLTP_HELAN	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf03108g10001.1	AT2G22590.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=470	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Ctg04506g00002.1	sp|Q8VYM0|ERF93_ARATH	*-**	Ethylene-responsive transcription factor 15	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06123g01020.1	sp|Q6PAX7|WDR1B_XENLA	--*-	WD repeat-containing protein 1-B	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01190g02004.1	sp|Q6S002|KIF10_DICDI	*-**	Kinesin-related protein 10	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf04182g00009.1	sp|Q9LHS8|LBD33_ARATH	*-*-	LOB domain-containing protein 33	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf05506g06005.1	sp|P02827|HSP70_XENLA	***-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf01278g09008.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR021720 (Malectin)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04732g01001.1	AT5G12170.2	***-	CRT (chloroquine-resistance transporter)-like transporter 3 LENGTH=452		
Niben101Scf03169g05002.1	sp|Q0G9N3|ATPF_LIRTU	*-**	ATP synthase subunit b, chloroplastic	IPR002146 (ATPase, F0 complex, subunit B/B', bacterial/chloroplast), IPR004100 (ATPase, F1 complex alpha/beta subunit, N-terminal domain), IPR023366 (ATP synthase subunit alpha-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015992 (proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o)), GO:0046034 (ATP metabolic process)
Niben101Scf01001g06001.1	sp|F4HYF3|DCYD1_ARATH	***-	Bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme)	
Niben101Scf11724g04003.1	ref|NP_175508.2|	****	cell redox home [Arabidopsis thaliana]	IPR012336 (Thioredoxin-like fold), IPR012936 (Endoplasmic reticulum vesicle transporter, C-terminal)	GO:0045454 (cell redox homeostasis)
Niben101Scf15657g00001.1	AT2G43280.1	*-*-	Far-red impaired responsive (FAR1) family protein LENGTH=206	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf03595g08008.1	sp|Q0WPR4|SCP34_ARATH	****	Serine carboxypeptidase-like 34	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00674g05001.1	gb|AES67059.2|	--*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Ctg16047g00001.1	AT2G28085.1	***-	SAUR-like auxin-responsive protein family LENGTH=124	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01073g07011.1	sp|Q9XFH3|MAD2_MAIZE	****	Mitotic spindle checkpoint protein MAD2	IPR003511 (DNA-binding HORMA), IPR027097 (Mitotic spindle checkpoint protein Mad2)	GO:0007094 (mitotic spindle assembly checkpoint)
Niben101Scf34287g00006.1	sp|P29162|ASOL_TOBAC	*-*-	L-ascorbate oxidase homolog	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding)
Niben101Scf01190g00009.1	sp|P42784|CTPA_SYNP2	--*-	Carboxyl-terminal-processing protease		
Niben101Scf01640g02012.1	AT5G38070.1	*-*-	RING/FYVE/PHD zinc finger superfamily protein LENGTH=259	IPR022143 (Protein of unknown function DUF3675)	
Niben101Scf01681g14017.1	AT2G13560.1	*-**	NAD-dependent malic enzyme 1 LENGTH=623	IPR001891 (Malic oxidoreductase)	GO:0004470 (malic enzyme activity), GO:0004471 (malate dehydrogenase (decarboxylating) (NAD+) activity), GO:0006108 (malate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf05155g00004.1			Unknown protein		
Niben101Scf00988g04026.1	sp|A2AJK6|CHD7_MOUSE	*-*-	Chromodomain-helicase-DNA-binding protein 7	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf06273g00002.1	AT2G33420.1	***-	Protein of unknown function (DUF810) LENGTH=1039	IPR008528 (Protein of unknown function DUF810)	
Niben101Scf01166g09006.1			Unknown protein		
Niben101Scf04040g00030.1	sp|Q9SHV1|GLR22_ARATH	*-*-	Glutamate receptor 2.2	IPR028082 (Periplasmic binding protein-like I)	
Niben101Scf39452g00004.1	sp|Q9SJT7|VHAA2_ARATH	*-**	V-type proton ATPase subunit a2	IPR002490 (V-type  ATPase, V0 complex, 116kDa subunit family)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf33026g00002.1	sp|Q9FLF4|PUB27_ARATH	***-	U-box domain-containing protein 27	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf00307g01019.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09742g00031.1	sp|B1XIR0|RL35_SYNP2	--*-	50S ribosomal protein L35	IPR021137 (Ribosomal protein L35)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01227g04017.1	gb|KEH22373.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf02823g04001.1	sp|O04135|KNAP2_MALDO	***-	Homeobox protein knotted-1-like 2	IPR005539 (ELK), IPR005540 (KNOX1), IPR005541 (KNOX2), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02647g01001.1	AT5G48170.1	***-	F-box family protein LENGTH=157	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Ctg15557g00001.1	sp|A7WM73|HEXO1_ARATH	*-*-	Beta-hexosaminidase 1	IPR029018 (Chitobiase/beta-hexosaminidase domain 2-like)	
Niben101Scf03488g06001.1	gb|KEH35238.1|	*-*-	rhodanese/cell cycle control phosphatase superfamily protein [Medicago truncatula]		
Niben101Scf05667g02004.1	sp|Q9SNC3|FLA4_ARATH	***-	Fasciclin-like arabinogalactan protein 4	IPR000782 (FAS1 domain)	
Niben101Scf11107g00015.1	sp|Q6FRZ9|ATM_CANGA	*-*-	Serine/threonine-protein kinase TEL1	IPR003151 (PIK-related kinase, FAT), IPR003152 (PIK-related kinase, FATC), IPR011009 (Protein kinase-like domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf04722g04017.1	ref|XP_007024392.1|	*-*-	Cc-nbs-lrr resistance protein, putative [Theobroma cacao] gb|EOY27014.1| Cc-nbs-lrr resistance protein, putative [Theobroma cacao]	IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf00063g04015.1	sp|Q9FLQ7|FH20_ARATH	*-*-	Formin-like protein 20	IPR000008 (C2 domain), IPR015425 (Formin, FH2 domain), IPR027643 (Formin-like family, plant), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0005515 (protein binding), GO:0005884 (actin filament), GO:0045010 (actin nucleation)
Niben101Scf13150g00002.1			Unknown protein		
Niben101Scf03657g02001.1	sp|O80340|ERF78_ARATH	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11709g01026.1	AT1G62400.1	****	Protein kinase superfamily protein LENGTH=345	IPR011009 (Protein kinase-like domain), IPR015783 (Serine/threonine-protein kinase HT1, plant)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10513g00001.1	sp|Q8CFQ3|AQR_MOUSE	*-*-	Intron-binding protein aquarius	IPR026300 (CWF11 family)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf07423g03009.1	ref|XP_007041689.1|	*-*-	SAUR auxin-responsive family protein [Theobroma cacao] gb|EOX97520.1| SAUR auxin-responsive family protein [Theobroma cacao]	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf04195g01006.1	sp|Q1JDX0|VATA_STRPB	****	V-type ATP synthase alpha chain	IPR005725 (ATPase, V1 complex, subunit A), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0015992 (proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0033180 (proton-transporting V-type ATPase, V1 domain), GO:0046034 (ATP metabolic process), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf06562g00013.1			Unknown protein		
Niben101Scf08508g02015.1	sp|Q8LG03|FB345_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00225g04007.1			Unknown protein		
Niben101Scf02241g00009.1	ref|XP_002524568.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37776.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01892g02001.1	gb|AAP54387.2|	***-	hAT family dimerisation domain containing protein [Oryza sativa Japonica Group]	IPR003656 (Zinc finger, BED-type), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding)
Niben101Scf05548g01006.1	sp|Q9FFD5|RIC4_ARATH	--*-	CRIB domain-containing protein RIC4	IPR000095 (CRIB domain)	
Niben101Scf02230g02003.1	sp|Q9RUG2|DNAJ_DEIRA	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf11791g00011.1	ref|XP_002532338.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF30040.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01372g06001.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf05848g04019.1			Unknown protein		
Niben101Scf09115g00016.1	sp|Q32LS6|ABHDD_DANRE	***-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07482g01016.1	sp|Q8Z7Q6|HIUH_SALTI	*-**	5-hydroxyisourate hydrolase	IPR000895 (Transthyretin/hydroxyisourate hydrolase), IPR018020 (Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase), IPR023416 (Transthyretin/hydroxyisourate hydrolase, superfamily), IPR023418 (Transthyretin, thyroxine binding site), IPR023419 (Transthyretin, conserved site)	GO:0006144 (purine nucleobase metabolic process), GO:0033971 (hydroxyisourate hydrolase activity)
Niben101Scf02025g00002.1	sp|P0C8Y9|PSA4B_ORYSI	****	Proteasome subunit alpha type-4-2	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf03705g03003.1	AT1G31040.1	*-*-	PLATZ transcription factor family protein LENGTH=243		
Niben101Scf03937g03001.1	sp|Q695T9|RHBL2_TOXGO	--*-	Rhomboid-like protease 2	IPR002610 (Peptidase S54, rhomboid)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf07863g00013.1	sp|P15349|RPOA1_HALMO	*-**	DNA-directed RNA polymerase subunit A'	IPR000684 (RNA polymerase II, heptapeptide repeat, eukaryotic), IPR006592 (RNA polymerase, N-terminal), IPR007066 (RNA polymerase Rpb1, domain 3), IPR007080 (RNA polymerase Rpb1, domain 1), IPR007081 (RNA polymerase Rpb1, domain 5), IPR007083 (RNA polymerase Rpb1, domain 4)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005665 (DNA-directed RNA polymerase II, core complex), GO:0006351 (transcription, DNA-templated), GO:0006366 (transcription from RNA polymerase II promoter)
Niben101Scf00684g00009.1	emb|CDY18441.1|	*-*-	BnaA04g21460D [Brassica napus]		
Niben101Scf09150g03001.1	sp|Q3E9D5|DCAM4_ARATH	****	S-adenosylmethionine decarboxylase proenzyme 4	IPR001985 (S-adenosylmethionine decarboxylase), IPR016067 (S-adenosylmethionine decarboxylase, core), IPR018167 (S-adenosylmethionine decarboxylase subgroup)	GO:0004014 (adenosylmethionine decarboxylase activity), GO:0006597 (spermine biosynthetic process), GO:0008295 (spermidine biosynthetic process)
Niben101Scf04699g00014.1	AT1G03445.1	*-**	Serine/threonine protein phosphatase family protein LENGTH=793	IPR012391 (Serine/threonine protein phosphatase, BSU1), IPR029052 (Metallo-dependent phosphatase-like)	GO:0004721 (phosphoprotein phosphatase activity), GO:0005506 (iron ion binding), GO:0005515 (protein binding), GO:0016787 (hydrolase activity), GO:0030145 (manganese ion binding)
Niben101Scf01958g02006.1	sp|Q99KI3|EMC3_MOUSE	****	ER membrane protein complex subunit 3	IPR002809 (Protein of unknown function DUF106, transmembrane)	GO:0016020 (membrane)
Niben101Scf09099g00028.1	AT3G07170.1	***-	Sterile alpha motif (SAM) domain-containing protein LENGTH=203	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf06726g00039.1	dbj|BAD81034.1|	*-*-	potassium channel NKT1 [Nicotiana tabacum]		
Niben101Scf05272g03009.1	sp|P48980|BGAL_SOLLC	***-	Beta-galactosidase	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf08702g03003.1	sp|A1XFV1|PSBC_NUPAD	*-**	Photosystem II CP43 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf09924g03004.1	AT5G62570.2	*-*-	Calmodulin binding protein-like LENGTH=494	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf02694g06012.1	emb|CDX84714.1|	***-	BnaA03g15160D [Brassica napus]	IPR028346 (HAUS augmin-like complex subunit 2)	GO:0031023 (microtubule organizing center organization), GO:0051225 (spindle assembly)
Niben101Scf04117g01004.1	AT3G54700.1	*-**	phosphate transporter 1;7 LENGTH=535	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02051g01009.1	sp|Q96NW7|LRRC7_HUMAN	*-*-	Leucine-rich repeat-containing protein 7	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02074g05080.1	ref|YP_004927590.1|	***-	orf101b (mitochondrion) [Brassica carinata] gb|AEH43605.1| orf101b [Brassica carinata]		
Niben101Scf08137g03011.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02323g02002.1	AT5G64330.1	***-	Phototropic-responsive NPH3 family protein LENGTH=746	IPR027356 (NPH3 domain), IPR029959 (Root phototropism protein 3-like)	GO:0016567 (protein ubiquitination)
Niben101Scf04444g03008.1	sp|Q8VYE2|TIM50_ARATH	****	Mitochondrial import inner membrane translocase subunit TIM50	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain), IPR027111 (Mitochondrial import inner membrane translocase subunit Tim50)	GO:0005515 (protein binding), GO:0005743 (mitochondrial inner membrane), GO:0005744 (mitochondrial inner membrane presequence translocase complex), GO:0015031 (protein transport)
Niben101Scf01291g00001.1	sp|Q9LHE5|TO401_ARATH	****	Mitochondrial import receptor subunit TOM40-1	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0055085 (transmembrane transport)
Niben101Scf04114g02039.1	sp|Q3C1I8|CYF_NICSY	***-	Apocytochrome f	IPR002325 (Cytochrome f), IPR024058 (Cytochrome f  transmembrane anchor), IPR024094 (Cytochrome f large domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0015979 (photosynthesis), GO:0020037 (heme binding), GO:0031361 (integral component of thylakoid membrane)
Niben101Scf01076g05021.1	sp|Q9M158|STR4_ARATH	***-	Rhodanese-like domain-containing protein 4, chloroplastic	IPR001763 (Rhodanese-like domain)	
Niben101Scf08738g00006.1	sp|Q9FNA9|PDAT1_ARATH	****	Phospholipid:diacylglycerol acyltransferase 1	IPR003386 (Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0008374 (O-acyltransferase activity)
Niben101Scf01022g03004.1	AT3G06630.1	****	protein kinase family protein LENGTH=671	IPR000014 (PAS domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004871 (signal transducer activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07227g02008.1	sp|Q2KIA6|PRPF3_BOVIN	*-*-	U4/U6 small nuclear ribonucleoprotein Prp3	IPR010541 (Domain of unknown function DUF1115), IPR013881 (Pre-mRNA-splicing factor 3), IPR027104 (U4/U6 small nuclear ribonucleoprotein Prp3)	GO:0000398 (mRNA splicing, via spliceosome), GO:0046540 (U4/U6 x U5 tri-snRNP complex)
Niben101Scf02384g00024.1	sp|Q9SIV2|PSD2A_ARATH	****	26S proteasome non-ATPase regulatory subunit 2 homolog A	IPR016643 (26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit)	GO:0000502 (proteasome complex), GO:0005488 (binding), GO:0030234 (enzyme regulator activity), GO:0042176 (regulation of protein catabolic process)
Niben101Scf02909g02012.1	sp|Q8N9R8|SCAI_HUMAN	***-	Protein SCAI	IPR022709 (Protein SCAI)	GO:0003714 (transcription corepressor activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf05351g00029.1	sp|P78968|PPZ_SCHPO	*-*-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf08328g00008.1	AT5G20140.2	*-*-	SOUL heme-binding family protein LENGTH=395	IPR006917 (SOUL haem-binding protein), IPR011256 (Regulatory factor, effector binding domain)	
Niben101Scf03965g03004.1	gb|AES67059.2|	***-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf01656g01002.1	AT5G64700.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=359	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf08851g00001.1	sp|Q93ZB9|FACR3_ARATH	****	Fatty acyl-CoA reductase 3	IPR016040 (NAD(P)-binding domain), IPR026055 (Fatty acyl-CoA reductase)	GO:0080019 (fatty-acyl-CoA reductase (alcohol-forming) activity)
Niben101Scf01948g00010.1	sp|Q6IQ97|RBM41_DANRE	*-**	RNA-binding protein 4.1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf12041g00006.1	sp|P49598|P2C37_ARATH	****	Protein phosphatase 2C 37	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf17719g02001.1	gb|AAU90304.1|	--*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf05082g02005.1			Unknown protein		
Niben101Scf03045g11007.1	AT3G48240.1	*-*-	Octicosapeptide/Phox/Bem1p family protein LENGTH=180	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf05349g01037.1	AT1G78895.1	*-*-	Reticulon family protein LENGTH=164	IPR003388 (Reticulon)	
Niben101Scf02021g00004.1	sp|Q9SY06|FAF1_ARATH	*-*-	Protein FANTASTIC FOUR 1	IPR021410 (The fantastic four family)	
Niben101Scf00254g00004.1	sp|P31531|1A1C_SOYBN	***-	1-aminocyclopropane-1-carboxylate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01694g00001.1	ref|XP_007016078.1|	--*-	Alternative NAD(P)H dehydrogenase 1 [Theobroma cacao] gb|EOY33697.1| Alternative NAD(P)H dehydrogenase 1 [Theobroma cacao]		
Niben101Scf02203g05001.1	sp|Q5F201|WDR16_MOUSE	*-*-	WD repeat-containing protein 16	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01269g09002.1	sp|Q3IRQ4|LEUC_NATPD	*-*-	3-isopropylmalate dehydratase large subunit	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf10122g01024.1	AT1G30840.1	***-	purine permease 4 LENGTH=382	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf00293g03002.1	sp|Q800K6|TOB1A_XENLA	*-*-	DNA topoisomerase 2-binding protein 1-A	IPR001357 (BRCT domain)	
Niben101Scf34748g00004.1	sp|Q9FJ40|GDL86_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02354g02009.1	sp|Q8LFH7|RL371_ARATH	***-	60S ribosomal protein L37-1	IPR001569 (Ribosomal protein L37e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01826g01001.1	sp|Q8LBB2|KING1_ARATH	***-	SNF1-related protein kinase regulatory subunit gamma-1	IPR000644 (CBS domain), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf10073g00008.1	ref|XP_002511763.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF50432.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf10274g00001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04655g00005.1	emb|CDP85705.1|	*-**	methyltransferase [Mycobacterium farcinogenes]	IPR007213 (Leucine carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf13683g01017.1	AT5G13020.1	*-*-	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein LENGTH=397	IPR005491 (EMSY N-terminal)	
Niben101Scf00022g09008.1	sp|Q58DG6|FXL20_BOVIN	*-*-	F-box/LRR-repeat protein 20	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Ctg14931g00003.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf02445g10018.1	ref|NP_565550.1|	****	protein RER1C1 [Arabidopsis thaliana] RecName: Full=Protein RER1C; Short=AtRER1C [Arabidopsis thaliana] dbj|BAA33862.1| AtRER1C [Arabidopsis thaliana] gb|AAL47450.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAB87102.2| putative integral membrane protein [Arabidopsis thaliana] gb|AAM19906.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAM63458.1| putative integral membrane protein [Arabidopsis thaliana] gb|AEC07439.1| protein RER1C1 [Arabidopsis thaliana]	IPR004932 (Retrieval of early ER protein Rer1)	GO:0016021 (integral component of membrane)
Niben101Scf14929g00007.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04980g00022.1	sp|Q6L398|PSAA_SACHY	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf01221g05012.1	sp|A8YTZ7|GATB_LACH4	*-*-	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	IPR017959 (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E)	GO:0016874 (ligase activity), GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf00428g04010.1	sp|O22715|AP1M2_ARATH	*-**	AP-1 complex subunit mu-2	IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf01450g05003.1	sp|Q39013|NAC2_ARATH	*-*-	NAC domain-containing protein 2	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02831g00017.1	AT3G14010.1	***-	CTC-interacting domain 4 LENGTH=595	IPR009604 (LsmAD domain), IPR025852 (Ataxin 2, SM domain)	
Niben101Scf05618g01002.1	sp|Q40477|ERF4_TOBAC	--**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00773g02007.1	sp|Q5L7I8|SYM_BACFN	*-**	Methionine--tRNA ligase	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0000049 (tRNA binding)
Niben101Scf01489g01008.1	sp|Q5AYW6|DXO_EMENI	***-	Decapping nuclease rai1	IPR013961 (RAI1-like)	
Niben101Scf06267g00001.1	gb|ADV59376.1|	***-	GAGA-binding transcriptional activator [Triphysaria pusilla]	IPR010409 (GAGA-binding transcriptional activator)	
Niben101Scf12011g01017.1	sp|Q42656|AGAL_COFAR	*-*-	Alpha-galactosidase	IPR000111 (Glycoside hydrolase, clan GH-D)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02085g12014.1	sp|Q4V7B8|RNF44_RAT	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf10613g00003.1			Unknown protein		
Niben101Scf01820g00029.1	sp|Q3UM29|COG7_MOUSE	****	Conserved oligomeric Golgi complex subunit 7	IPR019335 (Conserved oligomeric Golgi complex subunit 7)	GO:0006886 (intracellular protein transport), GO:0017119 (Golgi transport complex)
Niben101Scf08820g00012.1	sp|B9E018|RL21_CLOK1	--*-	50S ribosomal protein L21	IPR028909 (Ribosomal protein L21-like)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07586g00004.1	sp|Q9M7R0|ALL8_OLEEU	****	Calcium-binding allergen Ole e 8	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03867g01011.1	AT4G19880.2	***-	Glutathione S-transferase family protein LENGTH=382	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR016639 (Glutathione S-transferase (GST))	GO:0005515 (protein binding)
Niben101Scf04053g03018.1	emb|CDY08019.1|	***-	BnaC03g35040D [Brassica napus]		
Niben101Scf07650g03015.1	sp|Q4R888|HS71L_MACFA	***-	Heat shock 70 kDa protein 1-like	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf03702g03002.1	sp|Q9C5V6|TOP6B_ARATH	*-**	DNA topoisomerase 6 subunit B	IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0003677 (DNA binding), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0006265 (DNA topological change)
Niben101Scf00457g11001.1	gb|KEH24037.1|	***-	heparan-alpha-glucosaminide N-acetyltransferase-like protein [Medicago truncatula]	IPR012429 (Protein of unknown function DUF1624)	
Niben101Scf02044g00010.1	AT4G33920.1	****	Protein phosphatase 2C family protein LENGTH=380	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf08510g01007.1	AT3G07600.1	*-*-	Heavy metal transport/detoxification superfamily protein LENGTH=157		
Niben101Scf09604g01012.1	sp|Q8W4F0|DAR1_ARATH	***-	Protein DA1-related 1	IPR022087 (Protein DA1 like)	
Niben101Scf03503g00003.1	AT1G76040.2	****	calcium-dependent protein kinase 29 LENGTH=561	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09955g02008.1	sp|Q9ZUN5|TET2_ARATH	***-	Tetraspanin-2	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf01539g03014.1	sp|Q9SQ76|HXK2_SOLTU	****	Hexokinase-2	IPR001312 (Hexokinase)	GO:0004396 (hexokinase activity), GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0006096 (glycolytic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf11515g00019.1	AT1G09720.1	***-	Kinase interacting (KIP1-like) family protein LENGTH=928		
Niben101Scf05231g02020.1	sp|P42695|CNDD3_HUMAN	*-*-	Condensin-2 complex subunit D3	IPR016024 (Armadillo-type fold), IPR026971 (Condensin subunit 1/Condensin-2 complex subunit D3)	GO:0005488 (binding), GO:0007076 (mitotic chromosome condensation)
Niben101Scf05883g02007.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04967g00008.1	AT5G18650.1	****	CHY-type/CTCHY-type/RING-type Zinc finger protein LENGTH=267	IPR008913 (Zinc finger, CHY-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017921 (Zinc finger, CTCHY-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01965g00006.1	sp|Q94BZ1|ZIFL1_ARATH	*-*-	Protein ZINC INDUCED FACILITATOR-LIKE 1		
Niben101Ctg07155g00003.1	sp|P42423|YXDL_BACSU	****	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf02122g01008.1	AT5G11870.2	***-	Alkaline phytoceramidase (aPHC) LENGTH=270	IPR008901 (Ceramidase)	GO:0006672 (ceramide metabolic process), GO:0016021 (integral component of membrane), GO:0016811 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides)
Niben101Scf08167g01005.1			Unknown protein		
Niben101Scf32850g00004.1	sp|Q9XE98|PP303_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf00982g02003.1	AT5G10930.1	****	CBL-interacting protein kinase 5 LENGTH=445	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02638g04002.1	emb|CDX74084.1|	*-*-	BnaA03g29630D [Brassica napus]		
Niben101Scf06623g00011.1	AT2G21720.1	***-	Plant protein of unknown function (DUF639) LENGTH=734	IPR006927 (Protein of unknown function DUF639)	
Niben101Scf02015g06008.1	AT1G64770.3	***-	NDH-dependent cyclic electron flow 1 LENGTH=367	IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf03010g05001.1	sp|Q9SVS1|BGL47_ARATH	***-	Beta-glucosidase 47	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09109g02010.1	sp|Q9ASX2|TRNH1_ARATH	****	Tropinone reductase homolog	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf06390g00002.1	emb|CDX73612.1|	*-*-	BnaC08g23910D [Brassica napus]		
Niben101Scf04223g01014.1			Unknown protein		
Niben101Scf04081g00019.1	sp|Q71KP3|PETD_SPIMX	*-*-	Cytochrome b6-f complex subunit 4	IPR005870 (Cytochrome b6/f complex, subunit IV)	GO:0009055 (electron carrier activity), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0042651 (thylakoid membrane), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf00340g07006.1	sp|Q9SFF9|GL17_ARATH	***-	Germin-like protein subfamily 1 member 7	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf05230g03008.1	sp|A2RL47|TRUB_LACLM	*-**	tRNA pseudouridine synthase B	IPR002501 (Pseudouridine synthase II)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf04077g06008.1	sp|Q92S77|PYRD_RHIME	****	Dihydroorotate dehydrogenase (quinone)	IPR012135 (Dihydroorotate dehydrogenase, class 1/ 2), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004152 (dihydroorotate dehydrogenase activity), GO:0006207 ('de novo' pyrimidine nucleobase biosynthetic process), GO:0006222 (UMP biosynthetic process), GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf05697g07006.1	sp|Q8LBZ4|OTU_ARATH	*-*-	OTU domain-containing protein	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf11009g00014.1	sp|Q6NUJ5|PWP2B_HUMAN	--*-	PWWP domain-containing protein 2B	IPR000313 (PWWP domain)	
Niben101Scf01671g06015.1	AT1G04560.1	***-	AWPM-19-like family protein LENGTH=186	IPR008390 (AWPM-19-like)	
Niben101Scf00132g01003.1	AT1G64500.1	***-	Glutaredoxin family protein LENGTH=368	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf06261g03002.1	AT1G45201.1	***-	triacylglycerol lipase-like 1 LENGTH=479	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf01212g00003.1	sp|Q8LPR5|TCP4_ARATH	*-*-	Transcription factor TCP4	IPR005333 (Transcription factor, TCP)	
Niben101Scf02390g01008.1	sp|Q5R6L8|GPI8_PONAB	*-*-	GPI-anchor transamidase	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05226g01011.1	gb|ADG38081.1|	*-*-	AT1G76250-like protein [Capsella grandiflora]		
Niben101Scf04044g20001.1	sp|Q6NRL1|AGAP1_XENLA	*-**	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf01115g02008.1	gb|AAD15472.1|	--*-	Mutator-like transposase [Arabidopsis thaliana]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02793g08001.1	sp|P93751|ZFP8_ARATH	***-	Zinc finger protein 8	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Ctg15010g00002.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08298g03011.1	sp|P17980|PRS6A_HUMAN	***-	26S protease regulatory subunit 6A	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf00841g02010.1			Unknown protein		
Niben101Scf01696g06043.1	AT4G00340.1	****	receptor-like protein kinase 4 LENGTH=818	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013032 (EGF-like, conserved site), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf02174g03016.1	ref|XP_003611826.1|	--*-	Methyl jasmonate esterase [Medicago truncatula] gb|KEH27542.1| methylesterase [Medicago truncatula]		
Niben101Scf04411g01017.1	sp|Q9FNP8|RS193_ARATH	--*-	40S ribosomal protein S19-3	IPR001266 (Ribosomal protein S19e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10026g00008.1	emb|CDX81297.1|	--*-	BnaC09g07080D [Brassica napus]		
Niben101Scf04204g00004.1	ref|NP_001049789.1|	*-*-	OsJ_10436 [Oryza sativa Japonica Group]		
Niben101Scf03473g00010.1	sp|Q80W31|ZN569_MOUSE	*-*-	Zinc finger protein 569	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf03435g00002.1	sp|Q3UXZ9|KDM5A_MOUSE	*-*-	Lysine-specific demethylase 5A	IPR003347 (JmjC domain), IPR003349 (JmjN domain), IPR003888 (FY-rich, N-terminal), IPR003889 (FY-rich, C-terminal), IPR004198 (Zinc finger, C5HC2-type)	GO:0005634 (nucleus)
Niben101Scf08588g00018.1	AT3G11810.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=348		
Niben101Scf04361g00007.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY), IPR018872 (Zn-cluster domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08979g00003.1	AT4G38840.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf11616g00002.1	sp|P0C2F7|Y1947_ARATH	***-	Kelch repeat-containing protein	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf19957g00020.1	sp|P60620|COX1_ARATH	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05405g06013.1	ref|NP_001174021.1|	--*-	[Oryza sativa Japonica Group] dbj|BAH92749.1| [Oryza sativa Japonica Group]		
Niben101Scf02837g07022.1	sp|B8G1G5|GLGC_DESHD	--*-	Glucose-1-phosphate adenylyltransferase	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf13229g03005.1	sp|Q9SH26|PP102_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Ctg14389g00001.1	AT4G02050.1	*-**	sugar transporter protein 7 LENGTH=513	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02886g02006.1	AT1G13790.1	*-*-	XH/XS domain-containing protein LENGTH=736	IPR005379 (Uncharacterised domain XH)	
Niben101Scf02803g04010.1	sp|Q6IQ97|RBM41_DANRE	*-**	RNA-binding protein 4.1	IPR001878 (Zinc finger, CCHC-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf07499g00004.1	emb|CDX71830.1|	***-	BnaC08g30440D [Brassica napus]		
Niben101Scf01656g00008.1	gb|AAD02545.2|	--*-	PGPS/D3 [Petunia x hybrida]		
Niben101Scf02548g04004.1	AT1G70630.1	*-*-	Nucleotide-diphospho-sugar transferase family protein LENGTH=537	IPR003388 (Reticulon), IPR005069 (Nucleotide-diphospho-sugar transferase)	
Niben101Scf03076g02001.1	sp|A9VP95|RL30_BACWK	-***	50S ribosomal protein L30	IPR005996 (Ribosomal protein L30, bacterial-type), IPR016082 (Ribosomal protein L30, ferredoxin-like fold domain)	GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf33891g00001.1	sp|O82504|RDR2_ARATH	*-**	RNA-dependent RNA polymerase 2	IPR007855 (RNA-dependent RNA polymerase, eukaryotic-type)	GO:0003968 (RNA-directed RNA polymerase activity)
Niben101Scf04528g01011.1	ref|XP_003596332.1|	***-	Pathogen-related protein [Medicago truncatula]		
Niben101Scf00618g01018.1	gb|EWM09851.1|	*-*-	aminotransferase [Kutzneria sp. 744]		
Niben101Scf01718g01010.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01894g02004.1	sp|Q9FLG1|BXL4_ARATH	***-	Beta-D-xylosidase 4	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026891 (Fibronectin type III-like domain), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06860g00001.1	sp|Q9LSL1|BH093_ARATH	*-*-	Transcription factor bHLH93	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01228g04006.1	dbj|BAD68701.1|	*-*-	pherophorin-like protein [Oryza sativa Japonica Group]		
Niben101Scf00530g11020.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf02433g04001.1	gb|ABD32666.1|	***-	conserved hypothetical protein [Medicago truncatula] gb|AES64401.2| hypothetical protein [Medicago truncatula]		
Niben101Scf04871g22010.1	emb|CDX72341.1|	***-	BnaC07g43630D [Brassica napus]		
Niben101Scf07253g01020.1	sp|A7Z809|MENE_BACA2	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01599g03021.1	ref|XP_007035542.1|	*-**	Mitochondrial transcription termination factor family protein, putative [Theobroma cacao] gb|EOY06468.1| Mitochondrial transcription termination factor family protein, putative [Theobroma cacao]	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03689g01013.1	ref|XP_002521723.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF40710.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf03445g06004.1	sp|Q9SS81|PP221_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf09150g02022.1	emb|CDY37278.1|	***-	BnaA01g24980D [Brassica napus]		
Niben101Scf00218g00007.1	sp|Q9FJR0|RENT1_ARATH	****	Regulator of nonsense transcripts 1 homolog	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR018999 (RNA helicase UPF1, UPF2-interacting domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000184 (nuclear-transcribed mRNA catabolic process, nonsense-mediated decay), GO:0003677 (DNA binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008270 (zinc ion binding)
Niben101Scf15766g00009.1	sp|Q9FY49|LKHA4_ARATH	****	Leukotriene A-4 hydrolase homolog	IPR001930 (Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity), GO:0008270 (zinc ion binding), GO:0019370 (leukotriene biosynthetic process)
Niben101Scf05875g00010.1	sp|Q9SA38|OCT3_ARATH	*-**	Organic cation/carnitine transporter 3	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02852g03008.1	ref|XP_003610227.1|	*-*-	Ycf68 [Medicago truncatula]		
Niben101Scf02816g08002.1	ref|XP_002529359.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF33026.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02074g06074.1	ref|XP_002531456.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF30926.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf14311g00004.1	sp|F4IEY4|TRB5_ARATH	--**	Telomere repeat-binding factor 5	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02944g02004.1	sp|Q946Y7|SYP61_ARATH	***-	Syntaxin-61	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport), GO:0048193 (Golgi vesicle transport)
Niben101Scf02618g04019.1	gb|ADV15959.1|	*-*-	maturase, partial (mitochondrion) [Montinia caryophyllacea]		
Niben101Scf05011g00001.1	sp|Q61187|TS101_MOUSE	*-*-	Tumor susceptibility gene 101 protein	IPR017916 (Steadiness box)	
Niben101Scf00245g06021.1	sp|Q642R9|RB3GP_XENLA	*-**	Rab3 GTPase-activating protein catalytic subunit	IPR026147 (Rab3 GTPase-activating protein catalytic subunit)	GO:0005097 (Rab GTPase activator activity)
Niben101Scf03254g05002.1	AT1G25540.1	***-	phytochrome and flowering time regulatory protein (PFT1) LENGTH=836	IPR021419 (Mediator complex, subunit Med25, von Willebrand factor type A)	
Niben101Scf03374g09004.1	gb|KEH21046.1|	***-	myosin heavy chain-like protein [Medicago truncatula]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf08676g00002.1	AT2G40980.1	*-*-	Protein kinase superfamily protein LENGTH=617		
Niben101Scf06457g00005.1	sp|Q1M0P5|METB_HELPX	***-	Cystathionine gamma-synthase	IPR000277 (Cys/Met metabolism, pyridoxal phosphate-dependent enzyme), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00046g01019.1	gb|AHF62658.1|	***-	integral membrane protein MviN [Synechococcus sp. WH 8109]	IPR004268 (Flagellin assembly, membrane protein MviN)	
Niben101Scf04015g01010.1	sp|Q10Q08|RFA1B_ORYSJ	--*-	Replication protein A 70 kDa DNA-binding subunit B	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf03854g02003.1	AT4G39790.1	*-*-	Protein of unknown function (DUF630 and DUF632) LENGTH=657	IPR006867 (Domain of unknown function DUF632)	
Niben101Scf05929g04005.1	sp|Q38831|IAA13_ARATH	***-	Auxin-responsive protein IAA13	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf01147g01007.1	sp|O04006|PSAH_BRACM	****	Photosystem I reaction center subunit VI, chloroplastic	IPR004928 (Photosystem I PsaH, reaction centre subunit VI), IPR023833 (Signal peptide, camelysin), IPR029027 (Single alpha-helix domain)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf00739g00007.1			Unknown protein		
Niben101Scf03894g03006.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf15965g00016.1	sp|Q9H6B9|EPHX3_HUMAN	***-	Epoxide hydrolase 3	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Ctg06395g00002.1	sp|Q0K0V6|METE_CUPNH	*-**	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	IPR002629 (Cobalamin-independent methionine synthase MetE, C-terminal/archaeal)	GO:0003871 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity), GO:0008270 (zinc ion binding), GO:0009086 (methionine biosynthetic process)
Niben101Scf05201g07001.1	AT5G12180.1	****	calcium-dependent protein kinase 17 LENGTH=528	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01259g10022.1	sp|P0C550|AKT1_ORYSI	*-**	Potassium channel AKT1	IPR005821 (Ion transport domain)	GO:0005216 (ion channel activity), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00388g07005.1	sp|Q07262|1A1C_TOBAC	***-	1-aminocyclopropane-1-carboxylate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf04455g03001.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08208g04005.1	AT2G34790.1	*-**	FAD-binding Berberine family protein LENGTH=532	IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00202g04004.1	emb|CDX72486.1|	***-	BnaC07g45080D [Brassica napus]	IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf01543g01005.1			Unknown protein		
Niben101Scf00383g01001.1	ref|WP_007812443.1|	--*-	malate/lactate dehydrogenase [Rhizobium sp. CF142] gb|EJJ31525.1| malate/lactate dehydrogenase [Rhizobium sp. CF142]		
Niben101Scf00293g09003.1	AT5G16530.1	***-	Auxin efflux carrier family protein LENGTH=351	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00596g01007.1	ref|NP_054986.1|	*-*-	ORF45 protein [Spinacia oleracea] emb|CAB88782.1| ORF45 protein (chloroplast) [Spinacia oleracea]		
Niben101Scf03507g02020.1	AT1G61890.1	*-*-	MATE efflux family protein LENGTH=501	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf07623g01033.1	sp|Q9NUW8|TYDP1_HUMAN	*-**	Tyrosyl-DNA phosphodiesterase 1	IPR010347 (Tyrosyl-DNA phosphodiesterase I), IPR014905 (HIRAN domain), IPR027415 (Tyrosyl-DNA phosphodiesterase C-terminal domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0008081 (phosphoric diester hydrolase activity), GO:0008270 (zinc ion binding), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf02752g10002.1	AT5G65550.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=466	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02826g01005.1	sp|Q9LYN8|EXS_ARATH	***-	Leucine-rich repeat receptor protein kinase EXS	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf02941g01006.1	sp|F4J2Z7|SDR4_ARATH	****	Short-chain dehydrogenase reductase 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf04046g00008.1	sp|Q5QWY8|MAO1_IDILO	****	NAD-dependent malic enzyme	IPR001891 (Malic oxidoreductase)	GO:0004470 (malic enzyme activity), GO:0004471 (malate dehydrogenase (decarboxylating) (NAD+) activity), GO:0006108 (malate metabolic process), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02132g02010.1	gb|KEH38770.1|	*-*-	G protein coupled receptor [Medicago truncatula]	IPR007822 (Lanthionine synthetase C-like)	
Niben101Scf08562g00011.1	sp|O74286|ENO_CUNEL	***-	Enolase	IPR000941 (Enolase), IPR029017 (Enolase N-terminal domain-like), IPR029065 (Enolase C-terminal domain-like)	GO:0000015 (phosphopyruvate hydratase complex), GO:0000287 (magnesium ion binding), GO:0004634 (phosphopyruvate hydratase activity), GO:0006096 (glycolytic process)
Niben101Scf08975g00001.1	sp|P59234|YIPL_SOLTU	***-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf10015g07012.1	AT3G12520.1	****	sulfate transporter 4;2 LENGTH=677	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf09962g01006.1	sp|Q653H7|ARFR_ORYSJ	****	Auxin response factor 18	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf01697g13006.1	AT2G37740.1	*-**	zinc-finger protein 10 LENGTH=304	IPR001781 (Zinc finger, LIM-type), IPR015880 (Zinc finger, C2H2-like)	GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf00293g02005.1	sp|P94598|DHE3_BACTN	***-	Glutamate dehydrogenase	IPR006097 (Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain), IPR016040 (NAD(P)-binding domain)	GO:0006520 (cellular amino acid metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03645g02005.1	gb|AAD24658.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf10095g00008.1	sp|Q9FXH1|PPR52_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01182g01018.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf04663g04017.1	sp|Q3C1G8|RPOC1_NICSY	*-*-	DNA-directed RNA polymerase subunit beta'		
Niben101Ctg11806g00004.1	sp|Q9P0U3|SENP1_HUMAN	--*-	Sentrin-specific protease 1		
Niben101Scf03062g03001.1	sp|Q2P9K0|LLDD_XANOM	*-*-	L-lactate dehydrogenase	IPR012133 (Alpha-hydroxy acid dehydrogenase, FMN-dependent), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06286g03006.1	sp|P87172|GPI3_SCHPO	*-*-	Phosphatidylinositol N-acetylglucosaminyltransferase gpi3 subunit		
Niben101Scf08300g00008.1	sp|Q9ZWA8|FLA9_ARATH	***-	Fasciclin-like arabinogalactan protein 9	IPR000782 (FAS1 domain)	
Niben101Scf03515g00134.1			Unknown protein		
Niben101Scf00420g01017.1	sp|Q92616|GCN1L_HUMAN	*-*-	Translational activator GCN1	IPR016024 (Armadillo-type fold), IPR026827 (Proteasome component ECM29/Translational activator GCN1)	GO:0005488 (binding)
Niben101Scf00819g11005.1	gb|AES99701.2|	***-	transcription factor bHLH93-like protein [Medicago truncatula]	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02860g03010.1	sp|Q5U5Q3|MEX3C_HUMAN	--**	RNA-binding E3 ubiquitin-protein ligase MEX3C	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf15411g00001.1	sp|Q94A40|COPA1_ARATH	*-*-	Coatomer subunit alpha-1	IPR006692 (Coatomer, WD associated region), IPR010714 (Coatomer, alpha subunit, C-terminal), IPR011044 (Quinoprotein amine dehydrogenase, beta chain-like)	GO:0005198 (structural molecule activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030126 (COPI vesicle coat)
Niben101Scf02792g02012.1	sp|Q9ZVJ6|ANXD4_ARATH	***-	Annexin D4	IPR018502 (Annexin repeat)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf01745g06004.1	AT4G17080.1	***-	Histone H3 K4-specific methyltransferase SET7/9 family protein LENGTH=513	IPR003409 (MORN motif)	
Niben101Scf00293g09004.1	sp|Q553S1|ZN593_DICDI	***-	Zinc finger protein 593 homolog	IPR022755 (Zinc finger, double-stranded RNA binding)	
Niben101Scf01232g02007.1	sp|P58339|OCD2_RHIME	***-	Ornithine cyclodeaminase 2	IPR003462 (Ornithine cyclodeaminase/mu-crystallin), IPR023401 (Ornithine cyclodeaminase, N-terminal)	
Niben101Scf05425g00027.1	sp|A1AVS5|NUON_RUTMC	*-*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf04451g00004.1	AT3G56330.1	*-**	N2,N2-dimethylguanosine tRNA methyltransferase LENGTH=433	IPR002905 (tRNA methyltransferase, Trm1), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0004809 (tRNA (guanine-N2-)-methyltransferase activity), GO:0008033 (tRNA processing)
Niben101Scf05827g07015.1	sp|Q6K7E6|ERF1_ORYSJ	****	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06876g01036.1	sp|O67050|TADA_AQUAE	*-*-	tRNA-specific adenosine deaminase	IPR016193 (Cytidine deaminase-like)	GO:0003824 (catalytic activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity)
Niben101Scf00113g03001.1	AT3G25130.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). LENGTH=406		
Niben101Scf00351g05007.1	sp|P35817|BDF1_YEAST	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf01314g01004.1	ref|XP_002522206.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF40181.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf22954g00007.1	sp|Q13NG6|BETB_BURXL	****	NAD/NADP-dependent betaine aldehyde dehydrogenase	IPR010102 (Succinate semialdehyde dehydrogenase), IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0009013 (succinate-semialdehyde dehydrogenase [NAD(P)+] activity), GO:0009450 (gamma-aminobutyric acid catabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf04044g19020.1	ref|XP_007013731.1|	*-*-	Enhancer of polycomb-like transcription factor protein, putative isoform 5 [Theobroma cacao] gb|EOY31350.1| Enhancer of polycomb-like transcription factor protein, putative isoform 5 [Theobroma cacao]		
Niben101Scf00526g02005.1	sp|O43001|SYJ1_SCHPO	*-**	Inositol-1,4,5-trisphosphate 5-phosphatase 1	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf05645g05010.1	tpg|DAA37549.1|	***-	TPA: hypothetical protein ZEAMMB73_065337 [Zea mays]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf00126g06014.1	sp|F4I4W2|HCS2_ARATH	****	Biotin--protein ligase 2	IPR004408 (Biotin--acetyl-CoA-carboxylase ligase)	GO:0004077 (biotin-[acetyl-CoA-carboxylase] ligase activity), GO:0006464 (cellular protein modification process)
Niben101Scf14344g00002.1	ref|XP_002521307.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF41081.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02180g00019.1	ref|XP_007048379.1|	***-	Coiled-coil domain-containing protein 18, putative isoform 1 [Theobroma cacao] gb|EOX92536.1| Coiled-coil domain-containing protein 18, putative isoform 1 [Theobroma cacao]		
Niben101Scf11767g02027.1	ref|XP_002373174.1|	--*-	mitochondrial cation transporter, putative [Aspergillus flavus NRRL3357] gb|EED57562.1| mitochondrial cation transporter, putative [Aspergillus flavus NRRL3357]		
Niben101Scf01631g01001.1			Unknown protein		
Niben101Scf00491g04004.1	sp|Q0U7W4|CCR4_PHANO	***-	Glucose-repressible alcohol dehydrogenase transcriptional effector	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf02564g01012.1			Unknown protein		
Niben101Scf02618g04018.1	sp|Q9SSK5|MLP43_ARATH	***-	MLP-like protein 43	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf08755g04021.1	sp|Q9SI78|PPR93_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf28762g00001.1	sp|Q8RW96|2A5G_ARATH	****	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf00390g01009.1	sp|Q5RA17|RRP7A_PONAB	*-*-	Ribosomal RNA-processing protein 7 homolog A	IPR024326 (Ribosomal RNA-processing protein 7)	
Niben101Scf03790g01010.1	sp|Q43729|PER57_ARATH	****	Peroxidase 57	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05041g00003.1	sp|B0K036|SDHF1_RAT	***-	Succinate dehydrogenase assembly factor 1, mitochondrial	IPR008011 (Complex 1 LYR protein)	
Niben101Scf00635g09016.1	sp|Q9M069|E137_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 7	IPR012946 (X8 domain)	
Niben101Scf03221g01029.1	gb|ABA93974.2|	--*-	retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]	IPR013242 (Retroviral aspartyl protease)	
Niben101Scf00383g03006.1	sp|Q9SFZ3|BH110_ARATH	*-*-	Transcription factor bHLH110	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05548g02014.1	sp|Q9SIT6|AB5G_ARATH	*-*-	ABC transporter G family member 5	IPR013525 (ABC-2 type transporter)	GO:0016020 (membrane)
Niben101Scf03038g06010.1	sp|Q93Y35|PSMD6_ARATH	***-	26S proteasome non-ATPase regulatory subunit 6 homolog	IPR000717 (Proteasome component (PCI) domain), IPR019585 (26S proteasome, regulatory subunit Rpn7)	GO:0005515 (protein binding)
Niben101Scf19171g01031.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR001878 (Zinc finger, CCHC-type), IPR007527 (Zinc finger, SWIM-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf01841g02005.1	sp|Q3TLD5|RMP_MOUSE	*-*-	Unconventional prefoldin RPB5 interactor	IPR009053 (Prefoldin)	
Niben101Scf00683g01004.1	sp|O61125|STK4_DICDI	****	Serine/threonine-protein kinase 4 homolog A	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03352g01006.1	AT1G63340.1	****	Flavin-containing monooxygenase family protein LENGTH=424	IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf22524g00006.1			Unknown protein		
Niben101Scf03023g01009.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf08531g03027.1	sp|Q96DG6|CMBL_HUMAN	***-	Carboxymethylenebutenolidase homolog	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf06535g02007.1	gb|ABB47928.2|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf02123g10014.1	sp|Q84YK7|BGL27_ORYSJ	*-*-	Beta-glucosidase 27	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Ctg12271g00004.1	sp|Q94AI4|METL1_ARATH	*-**	Methyltransferase-like protein 1	IPR007757 (MT-A70-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006139 (nucleobase-containing compound metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf04763g02018.1	sp|Q9LN01|PPR21_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05499g00004.1	emb|CDY27351.1|	*-*-	BnaC04g50540D [Brassica napus]	IPR022212 (Protein of unknown function DUF3741), IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf05549g02004.1	ref|XP_002311412.1|	***-	18S pre-rib gar2 [Populus trichocarpa]		
Niben101Scf04629g00008.1	sp|Q9SSE5|COL9_ARATH	--**	Zinc finger protein CONSTANS-LIKE 9	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf09130g05007.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00869g06021.1	sp|B3QP89|ZUPT_CHLP8	*-**	Zinc transporter ZupT	IPR003689 (Zinc/iron permease)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03351g01005.1			Unknown protein		
Niben101Scf02210g07002.1	AT5G23680.1	*-*-	Sterile alpha motif (SAM) domain-containing protein LENGTH=295	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf01909g01020.1	sp|Q9M1V1|SOT6_ARATH	*-**	Cytosolic sulfotransferase 6	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf11091g00002.1	sp|Q9SKU1|CLC1_ARATH	****	Clathrin light chain 1	IPR000996 (Clathrin light chain)	GO:0005198 (structural molecule activity), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030130 (clathrin coat of trans-Golgi network vesicle), GO:0030132 (clathrin coat of coated pit)
Niben101Scf02175g04004.1			Unknown protein		
Niben101Scf00109g07023.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02798g05012.1	sp|Q8GXX7|C3H33_ARATH	***-	Zinc finger CCCH domain-containing protein 33	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf00305g05035.1	sp|P14720|DFRA_PETHY	***-	Dihydroflavonol-4-reductase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf03657g08004.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf00710g00005.1	ref|XP_010111480.1|	*-*-	ATP synthase subunit epsilon [Morus notabilis] gb|EXC31003.1| ATP synthase subunit epsilon [Morus notabilis]		
Niben101Scf03374g08020.1	AT4G11610.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1011	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf02124g01021.1	sp|Q818F0|DNAJ_BACCR	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf01376g00006.1	sp|P55200|KMT2A_MOUSE	*-*-	Histone-lysine N-methyltransferase 2A	IPR000313 (PWWP domain), IPR001214 (SET domain), IPR002999 (Tudor domain), IPR003616 (Post-SET domain), IPR003888 (FY-rich, N-terminal), IPR003889 (FY-rich, C-terminal)	GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf06218g04002.1	sp|P50699|TLPH_ARATH	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf02819g03008.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf03572g03001.1	ref|XP_003613342.1|	*-*-	Nbs-lrr resistance protein [Medicago truncatula]	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf05167g00002.1	ref|XP_002528995.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF33414.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05230g02002.1	sp|Q9C9Y4|FB136_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf16165g00010.1	AT2G07771.2	****	Cytochrome C assembly protein LENGTH=256	IPR003557 (Cytochrome c-type biogenesis protein CcmC)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf06249g05013.1	AT2G26135.1	*-**	RING/U-box protein with C6HC-type zinc finger LENGTH=384	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02172g06003.1	gb|KEH31981.1|	--*-	plant calmodulin-binding-like protein [Medicago truncatula]		
Niben101Scf10464g00004.1	sp|Q9SFB5|SCP27_ARATH	****	Serine carboxypeptidase-like 27	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf18725g00007.1	sp|P26977|PUR2_SALTY	****	Phosphoribosylamine--glycine ligase	IPR000115 (Phosphoribosylglycinamide synthetase), IPR016185 (Pre-ATP-grasp domain)	GO:0003824 (catalytic activity), GO:0004637 (phosphoribosylamine-glycine ligase activity), GO:0005524 (ATP binding), GO:0009113 (purine nucleobase biosynthetic process), GO:0046872 (metal ion binding)
Niben101Scf00571g02006.1	AT3G26040.1	*-**	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00873g01012.1	sp|O14647|CHD2_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 2	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf08873g01009.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf01190g03003.1	sp|P53800|FDFT_NICBE	*-*-	Squalene synthase	IPR008949 (Isoprenoid synthase domain)	
Niben101Scf02582g00003.1	sp|P41099|RLA2_PARAR	*-*-	60S acidic ribosomal protein P2	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf08805g00003.1			Unknown protein		
Niben101Scf18000g00029.1	sp|Q2LVL0|MSBA_SYNAS	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf06688g01009.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf15224g00007.1	AT5G46770.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=133		
Niben101Scf03624g07003.1	AT1G09890.1	***-	Rhamnogalacturonate lyase family protein LENGTH=617	IPR008979 (Galactose-binding domain-like), IPR010325 (Rhamnogalacturonate lyase), IPR011013 (Galactose mutarotase-like domain), IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf06280g02003.1	sp|Q27368|E2F_DROME	*-**	Transcription factor E2f	IPR007704 (Mannosyltransferase, DXD), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005667 (transcription factor complex), GO:0005789 (endoplasmic reticulum membrane), GO:0006355 (regulation of transcription, DNA-templated), GO:0006506 (GPI anchor biosynthetic process), GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04954g01004.1	AT5G45560.1	****	Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein LENGTH=719	IPR002913 (START domain), IPR009769 (Domain of unknown function DUF1336), IPR011993 (Pleckstrin homology-like domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf02351g02012.1			Unknown protein		
Niben101Ctg14726g00004.1	sp|Q8S7E1|CAO_ORYSJ	*-**	Chlorophyllide a oxygenase, chloroplastic	IPR013626 (Pheophorbide a oxygenase)	GO:0010277 (chlorophyllide a oxygenase [overall] activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02309g03021.1	gb|AFI44273.1|	****	rib L5 (mitochondrion) [Silene vulgaris]	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01313g00014.1			Unknown protein		
Niben101Scf02749g05035.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00542g02007.1	sp|Q9ZUA9|Y2181_ARATH	***-	PHD finger protein	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06087g09005.1	AT5G64700.1	*-**	nodulin MtN21 /EamA-like transporter family protein LENGTH=359	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf02540g01015.1			Unknown protein		
Niben101Scf01181g03006.1	AT3G18240.1	***-	Ribosomal protein S24/S35, mitochondrial LENGTH=419	IPR019349 (Ribosomal protein S24/S35, mitochondrial, conserved domain)	
Niben101Scf00557g03012.1	AT2G44380.1	***-	Cysteine/Histidine-rich C1 domain family protein LENGTH=247	IPR004146 (DC1), IPR011424 (C1-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03471g01012.1			Unknown protein		
Niben101Scf01615g01009.1	ref|XP_007034030.1|	***-	Pentatricopeptide repeat superfamily protein isoform 1 [Theobroma cacao] gb|EOY04956.1| Pentatricopeptide repeat superfamily protein isoform 1 [Theobroma cacao]	IPR012349 (FMN-binding split barrel)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06957g00003.1	sp|A4QKI4|RPOB_CAPBU	*-**	DNA-directed RNA polymerase subunit beta	IPR007642 (RNA polymerase Rpb2, domain 2), IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf02082g00004.1	emb|CDX88445.1|	*-*-	BnaC06g38890D [Brassica napus]	IPR008889 (VQ)	
Niben101Scf01032g00002.1	sp|Q9FIH9|CML37_ARATH	--**	Calcium-binding protein CML37	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01686g01008.1	AT2G34160.1	****	Alba DNA/RNA-binding protein LENGTH=130	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Scf10940g07010.1	ref|NP_001051816.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf00817g05002.1	sp|Q9M2F1|RS272_ARATH	-**-	40S ribosomal protein S27-2		
Niben101Scf00501g00004.1	sp|P81392|MYB06_ANTMA	*-*-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06795g00001.1	AT1G26761.1	***-	Arabinanase/levansucrase/invertase LENGTH=444	IPR007184 (Mannoside phosphorylase), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	
Niben101Scf02475g00001.1	ref|XP_002530085.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF32284.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00490g00004.1	sp|P16231|ICI1_SOLPE	--**	Wound-induced proteinase inhibitor 1	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding)
Niben101Scf10732g01014.1	sp|B9KJ67|RL2_ANAMF	*-*-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04753g03003.1	emb|CDX95431.1|	*-*-	BnaC01g33230D [Brassica napus]	IPR026960 (Reverse transcriptase zinc-binding domain)	
Niben101Scf01148g01006.1	sp|P42814|RNS2_ARATH	*-**	Ribonuclease 2	IPR001568 (Ribonuclease T2-like)	GO:0003723 (RNA binding), GO:0033897 (ribonuclease T2 activity)
Niben101Scf03444g03015.1	ref|XP_003601496.1|	***-	Membrane protein, putative [Medicago truncatula]		
Niben101Scf00635g06006.1	sp|Q9FZE0|BGL40_ARATH	***-	Beta-glucosidase 40	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00457g11002.1	AT2G39570.1	***-	ACT domain-containing protein LENGTH=411	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf01826g05013.1	sp|Q9STM6|GDL57_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00348g01009.1	sp|Q9PE53|RS4_XYLFA	--*-	30S ribosomal protein S4	IPR002942 (RNA-binding S4 domain), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding)
Niben101Scf04664g02003.1	sp|Q9FH57|GATA5_ARATH	****	GATA transcription factor 5	IPR016679 (Transcription factor, GATA, plant)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding), GO:0045893 (positive regulation of transcription, DNA-templated)
Niben101Scf01858g01004.1	sp|Q9FQ03|XRN3_ARATH	--*-	5'-3' exoribonuclease 3		
Niben101Scf02990g01004.1	sp|Q9T070|COX6A_ARATH	****	Cytochrome c oxidase subunit 6a, mitochondrial	IPR001349 (Cytochrome c oxidase, subunit VIa)	GO:0004129 (cytochrome-c oxidase activity), GO:0005743 (mitochondrial inner membrane), GO:0005751 (mitochondrial respiratory chain complex IV)
Niben101Scf02517g00003.1	sp|O49006|PME3_ARATH	****	Pectinesterase/pectinesterase inhibitor 3	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf06369g05020.1	ref|XP_002529729.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF32658.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11175g00005.1	emb|CDY22603.1|	***-	BnaC08g42370D [Brassica napus]	IPR016972 (Uncharacterised conserved protein UCP031279)	
Niben101Scf07687g00010.1	emb|CDY22314.1|	--*-	BnaA06g36360D [Brassica napus]		
Niben101Scf01991g03008.1	gb|ADK13069.1|	***-	conserved hypothetical protein 12 [Hevea brasiliensis]		
Niben101Scf00712g08006.1	sp|Q83E09|RS1_COXBU	--*-	30S ribosomal protein S1		
Niben101Scf06123g01021.1	AT3G09760.1	***-	RING/U-box superfamily protein LENGTH=491	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf11491g02007.1	sp|Q9ZNS1|RS7_AVIMR	***-	40S ribosomal protein S7	IPR000554 (Ribosomal protein S7e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01511g00019.1	AT2G25180.1	*-*-	response regulator 12 LENGTH=596	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily), IPR017053 (Response regulator, plant B-type)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03503g01001.1	sp|Q5ZJJ2|RFA1_CHICK	--*-	Replication protein A 70 kDa DNA-binding subunit		
Niben101Scf03309g07006.1	sp|Q9S7Y1|BH030_ARATH	***-	Transcription factor bHLH30	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03116g04002.1	emb|CDY43257.1|	*-*-	BnaC05g48500D [Brassica napus]		
Niben101Scf28181g00011.1	sp|Q93W93|FBK22_ARATH	***-	F-box/kelch-repeat protein	IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf00679g07004.1	AT4G21750.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=762	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008289 (lipid binding), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg13431g00004.1	AT2G36870.1	****	xyloglucan endotransglucosylase/hydrolase 32 LENGTH=299	IPR010713 (Xyloglucan endo-transglycosylase, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf06454g00001.1	sp|Q8S8A0|GDU4_ARATH	*-*-	Protein GLUTAMINE DUMPER 4		
Niben101Scf01813g00001.1	emb|CAH67307.1|	--*-	[Oryza sativa Indica Group]		
Niben101Scf02220g05011.1	sp|Q8YM56|CLPB2_NOSS1	*-*-	Chaperone protein ClpB 2	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf12266g02013.1	sp|Q3T0F2|TPPC2_BOVIN	***-	Trafficking protein particle complex subunit 2	IPR006722 (Sedlin)	GO:0005622 (intracellular), GO:0006810 (transport), GO:0006888 (ER to Golgi vesicle-mediated transport)
Niben101Scf00863g17025.1	AT1G65420.1	*-*-	Protein of unknown function (DUF565) LENGTH=197	IPR007572 (Uncharacterised protein family Ycf20)	
Niben101Scf00595g08039.1	sp|F4JVN6|TPPII_ARATH	*-**	Tripeptidyl-peptidase 2	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00486g02004.1			Unknown protein		
Niben101Scf00494g03003.1			Unknown protein		
Niben101Scf06023g02017.1	AT2G42260.1	***-	uv-b-insensitive 4 LENGTH=259		
Niben101Scf12680g01003.1	sp|Q99832|TCPH_HUMAN	****	T-complex protein 1 subunit eta	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf04655g00006.1	sp|E1U332|ALL12_OLEEU	*-*-	Isoflavone reductase-like protein	IPR016040 (NAD(P)-binding domain)	
Niben101Scf00219g00006.1	sp|Q86V35|CABP7_HUMAN	--**	Calcium-binding protein 7	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00369g03016.1			Unknown protein		
Niben101Scf05372g02008.1	sp|Q8LEJ6|FLA11_ARATH	*-*-	Fasciclin-like arabinogalactan protein 11	IPR000782 (FAS1 domain)	
Niben101Scf20935g00005.1	ref|WP_026862773.1|	--*-	membrane protein [Intrasporangiaceae bacterium URHB0013]		
Niben101Scf03170g01021.1	sp|Q9SV60|XTH2_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 2	IPR010713 (Xyloglucan endo-transglycosylase, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf09976g00011.1			Unknown protein		
Niben101Scf03064g04002.1	sp|Q82HS2|MDH_STRAW	****	Malate dehydrogenase	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf00573g01004.1	ref|XP_002528223.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF34156.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03949g06009.1	AT4G38160.3	****	Mitochondrial transcription termination factor family protein LENGTH=378	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08851g00002.1	AT3G06470.1	****	GNS1/SUR4 membrane protein family LENGTH=278	IPR002076 (ELO family)	GO:0016021 (integral component of membrane)
Niben101Scf01888g04001.1	sp|Q38899|ORC2_ARATH	--*-	Origin recognition complex subunit 2		
Niben101Scf15824g00010.1	sp|Q0P5W1|VPS8_MOUSE	***-	Vacuolar protein sorting-associated protein 8 homolog	IPR000547 (Clathrin, heavy chain/VPS, 7-fold repeat), IPR001841 (Zinc finger, RING-type), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR025941 (Vacuolar protein sorting-associated protein 8, central domain)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0008270 (zinc ion binding), GO:0016192 (vesicle-mediated transport)
Niben101Scf02046g00001.1	AT1G12910.1	*-*-	Transducin/WD40 repeat-like superfamily protein LENGTH=346	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf08635g04014.1	sp|B6SGC5|CNR6_MAIZE	***-	Cell number regulator 6	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf00730g00026.1	sp|A2BN38|RS12_HYPBU	***-	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02237g01001.1	sp|Q8BT14|CNOT4_MOUSE	*-*-	CCR4-NOT transcription complex subunit 4	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03374g06009.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00438g02012.1	sp|Q7W515|HEMH_BORPA	--*-	Ferrochelatase		
Niben101Scf14882g01006.1	sp|Q18GF3|RS19_HALWD	****	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf04488g00021.1	sp|A2XS65|CYT10_ORYSI	****	Cysteine proteinase inhibitor 10	IPR000010 (Proteinase inhibitor I25, cystatin), IPR027214 (Cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf05934g02008.1	gb|AEK83046.1|	*-*-	At1g15240-like protein [Capsella grandiflora]	IPR001683 (Phox homologous domain), IPR003114 (Phox-associated domain)	GO:0035091 (phosphatidylinositol binding)
Niben101Scf01836g00001.1			Unknown protein		
Niben101Scf02738g07013.1	AT1G30950.1	***-	F-box family protein LENGTH=442	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf03266g05001.1	sp|A1JIG3|FADA_YERE8	--*-	3-ketoacyl-CoA thiolase	IPR027902 (Protein of unknown function DUF4487)	
Niben101Scf06019g00004.1	sp|Q9C9S2|FB91_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05396g06008.1	sp|E9Q349|WDR25_MOUSE	--*-	WD repeat-containing protein 25	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf02440g01018.1	sp|O81902|PUB8_ARATH	****	U-box domain-containing protein 8	IPR004908 (ATPase, V1 complex, subunit H), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0000221 (vacuolar proton-transporting V-type ATPase, V1 domain), GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016567 (protein ubiquitination), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf00088g01018.1	sp|P92999|GL118_ARATH	***-	Germin-like protein subfamily 1 member 18	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Ctg14302g00007.1	AT4G00820.1	*-*-	IQ-domain 17 LENGTH=534		
Niben101Scf17733g00001.1	sp|Q9LZQ1|TBL6_ARATH	*-*-	Protein trichome birefringence-like 6	IPR026057 (PC-Esterase)	
Niben101Scf05051g03002.1	AT2G28315.1	*-*-	Nucleotide/sugar transporter family protein LENGTH=342		
Niben101Scf03478g00004.1			Unknown protein		
Niben101Scf16511g00010.1	sp|Q9LUE2|TPS18_ARATH	****	Terpenoid synthase 18	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf00193g00023.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf01227g03004.1	AT2G39980.1	***-	HXXXD-type acyl-transferase family protein LENGTH=482	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	
Niben101Scf03326g02005.1	ref|XP_002532338.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF30040.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00448g19009.1	sp|Q00624|ASOL_BRANA	***-	L-ascorbate oxidase homolog	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf38084g00002.1	sp|Q8RY60|Y1733_ARATH	--*-	DUF21 domain-containing protein		
Niben101Ctg15143g00004.1	sp|O81263|KITH_ORYSJ	*-**	Thymidine kinase	IPR001267 (Thymidine kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004797 (thymidine kinase activity), GO:0005524 (ATP binding)
Niben101Scf07790g03032.1	ref|XP_002518509.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF43896.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06513g00007.1	ref|XP_002523546.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF38885.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00225g05010.1	ref|XP_002524424.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37959.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00963g05027.1	sp|A4G9I1|TATB_HERAR	--*-	Sec-independent protein translocase protein TatB		
Niben101Scf01150g01001.1	sp|Q9LT15|STP10_ARATH	--**	Sugar transport protein 10	IPR005828 (General substrate transporter)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf05330g01005.1	AT5G50400.1	****	purple acid phosphatase 27 LENGTH=611	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf02895g01016.1	sp|Q9LIC2|TMN7_ARATH	***-	Transmembrane 9 superfamily member 7	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Ctg13961g00001.1	sp|Q9C7N5|GDL14_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04610g03003.1			Unknown protein		
Niben101Scf14156g00018.1			Unknown protein	IPR003656 (Zinc finger, BED-type)	GO:0003677 (DNA binding)
Niben101Scf08963g02003.1	gb|KEH36513.1|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf01681g14014.1	AT2G13560.1	*-**	NAD-dependent malic enzyme 1 LENGTH=623	IPR016040 (NAD(P)-binding domain)	GO:0004471 (malate dehydrogenase (decarboxylating) (NAD+) activity), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf38039g00001.1			Unknown protein		
Niben101Scf01150g08001.1	AT1G43650.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=343	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01482g02015.1	sp|Q5RCU0|TF2AA_PONAB	--**	Transcription initiation factor IIA subunit 1	IPR004855 (Transcription factor IIA, alpha/beta subunit), IPR009083 (Transcription factor IIA, helical)	GO:0005672 (transcription factor TFIIA complex), GO:0006367 (transcription initiation from RNA polymerase II promoter)
Niben101Scf02264g06029.1	AT2G29650.1	*-*-	phosphate transporter 4;1 LENGTH=512	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf06044g00003.1	sp|Q51876|LEP_PHOLA	****	Signal peptidase I	IPR000223 (Peptidase S26A, signal peptidase I), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf01640g02011.1	sp|P48724|IF5_PHAVU	****	Eukaryotic translation initiation factor 5	IPR002735 (Translation initiation factor IF2/IF5), IPR016024 (Armadillo-type fold)	GO:0003743 (translation initiation factor activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0006413 (translational initiation)
Niben101Scf06611g01001.1	AT2G07739.1	*-*-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf04259g01001.1	sp|Q09221|CPNA2_CAEEL	*-*-	Copine family protein 2	IPR002035 (von Willebrand factor, type A), IPR010734 (Copine)	
Niben101Scf00690g04007.1	sp|Q55EI6|ATX10_DICDI	*-*-	Ataxin-10 homolog	IPR016024 (Armadillo-type fold), IPR019156 (Ataxin-10 domain)	GO:0005488 (binding)
Niben101Scf06465g04003.1	sp|P12360|CB11_SOLLC	***-	Chlorophyll a-b binding protein 6A, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf02767g04005.1	sp|O64791|SY124_ARATH	***-	Syntaxin-124	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf01025g10006.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01269g09003.1	AT4G26965.1	*-*-	NADH:ubiquinone oxidoreductase, 17.2kDa subunit LENGTH=184		
Niben101Scf01337g01002.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03154g00005.1	sp|Q03066|RPSC_NOSS1	****	RNA polymerase sigma-C factor	IPR014284 (RNA polymerase sigma-70 like domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Scf06112g00004.1	AT4G36790.1	***-	Major facilitator superfamily protein LENGTH=489	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf06825g00018.1	sp|P24924|ITRY_ACACO	****	Trypsin inhibitor	IPR002160 (Proteinase inhibitor I3, Kunitz legume)	GO:0004866 (endopeptidase inhibitor activity)
Niben101Scf00592g08008.1	sp|Q38882|PLDA1_ARATH	*-*-	Phospholipase D alpha 1	IPR015679 (Phospholipase D family)	
Niben101Scf11709g01027.1	sp|O82345|BAG6_ARATH	--**	BAG family molecular chaperone regulator 6	IPR003103 (BAG domain)	GO:0051087 (chaperone binding)
Niben101Scf08995g00004.1	sp|Q9C8T7|PP101_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00131g01010.1	sp|A6MFK9|CRVP_DEMVE	***-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	
Niben101Scf18643g00022.1	sp|Q9SQL2|CB24_PEA	***-	Chlorophyll a-b binding protein P4, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf07688g01013.1	ref|XP_003606359.1|	*-*-	Chromatin remodeling complex subunit [Medicago truncatula]		
Niben101Scf01998g03013.1	ref|XP_002516088.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF46090.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf10636g00009.1			Unknown protein		
Niben101Scf02971g03001.1	sp|Q93XX4|C2D61_ARATH	***-	C2 domain-containing protein	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf03944g05008.1			Unknown protein		
Niben101Scf18129g01007.1	emb|CDY19744.1|	*-*-	BnaA09g03970D [Brassica napus]		
Niben101Scf06825g04023.1	sp|Q97GI6|DAPH_CLOAB	--*-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	IPR011004 (Trimeric LpxA-like)	
Niben101Scf00398g01004.1	sp|P19963|ALL1_OLEEU	***-	Major pollen allergen Ole e 1	IPR006041 (Pollen Ole e 1 allergen/extensin)	GO:0005615 (extracellular space)
Niben101Scf00348g04002.1	emb|CDY22179.1|	*-*-	BnaC01g39220D [Brassica napus]		
Niben101Scf12277g00001.1	sp|Q566M8|RN150_DANRE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02230g02004.1	sp|O64668|PSNA_ARATH	*-*-	Presenilin-like protein	IPR006639 (Presenilin/signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf08508g02016.1	sp|Q5VRJ8|PX115_ORYSJ	****	Peroxisomal membrane protein 11-5	IPR008733 (Peroxisomal biogenesis factor 11)	GO:0005779 (integral component of peroxisomal membrane), GO:0016559 (peroxisome fission)
Niben101Scf01409g10007.1	sp|F4JQ95|DGK7_ARATH	****	Diacylglycerol kinase 7	IPR000756 (Diacylglycerol kinase, accessory domain), IPR001206 (Diacylglycerol kinase, catalytic domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf00369g06003.1			Unknown protein		
Niben101Scf07623g01034.1	sp|P0ABI1|CLPA_ECO57	****	ATP-dependent Clp protease ATP-binding subunit ClpA	IPR001270 (ClpA/B family), IPR004176 (Clp, N-terminal), IPR019489 (Clp ATPase, C-terminal), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028299 (ClpA/B, conserved site 2)	GO:0005524 (ATP binding), GO:0019538 (protein metabolic process)
Niben101Scf00812g00008.1	AT5G52110.1	***-	Protein of unknown function (DUF2930) LENGTH=275	IPR021325 (Protein of unknown function DUF2930)	
Niben101Scf01036g03005.1	ref|XP_002527602.1|	*-*-	nucleic acid binding protein, putative [Ricinus communis] gb|EEF34783.1| nucleic acid binding protein, putative [Ricinus communis]		
Niben101Scf01237g11010.1	sp|A7NY33|PER4_VITVI	****	Peroxidase 4	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01799g02002.1	AT5G16710.1	***-	dehydroascorbate reductase 1 LENGTH=258	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf01727g05001.1	sp|Q9LJX1|PRE5_ARATH	***-	Transcription factor PRE5	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04430g02004.1	ref|XP_003589307.1|	*-*-	F-box/FBD/LRR-repeat protein [Medicago truncatula]		
Niben101Scf03068g00010.1	sp|A9B477|NUOA_HERA2	****	NADH-quinone oxidoreductase subunit A	IPR000440 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04641g03012.1	AT4G09810.1	***-	Nucleotide-sugar transporter family protein LENGTH=335		
Niben101Scf17922g02016.1	AT1G30300.1	***-	Metallo-hydrolase/oxidoreductase superfamily protein LENGTH=324	IPR001279 (Beta-lactamase-like)	
Niben101Scf02008g00001.1	sp|Q8K339|KIN17_MOUSE	***-	DNA/RNA-binding protein KIN17	IPR019447 (DNA/RNA-binding protein Kin17, conserved domain)	
Niben101Scf38084g00001.1	AT1G47330.1	*-*-	CBS domain-containing protein with a domain of unknown function (DUF21) LENGTH=527	IPR002550 (Domain of unknown function DUF21)	
Niben101Scf10396g01015.1	AT5G22310.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=481		
Niben101Scf00739g02016.1	sp|Q5ZLX5|ZRAB2_CHICK	--**	Zinc finger Ran-binding domain-containing protein 2	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf01787g00079.1	sp|Q9LK50|AB26G_ARATH	*-*-	ABC transporter G family member 26	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf05844g01006.1	sp|B0KC20|BIOF_THEP3	***-	8-amino-7-oxononanoate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00409g04002.1	sp|Q4V7B8|RNF44_RAT	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf17795g00001.1	AT4G20270.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=992	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf12041g00005.1	AT2G39750.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=694	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf01524g00006.1	AT4G00880.1	***-	SAUR-like auxin-responsive protein family LENGTH=122	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf09109g02011.1	sp|Q5RE95|WDR5B_PONAB	***-	WD repeat-containing protein 5B	IPR006594 (LisH dimerisation motif), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02535g02001.1	gb|AID21636.1|	***-	At4g21420p-like protein [Arabidopsis lyrata]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf02210g03002.1	emb|CDX92772.1|	***-	BnaC07g40300D [Brassica napus]		
Niben101Ctg14450g00003.1			Unknown protein		
Niben101Scf03267g00049.1	sp|Q0SNC0|RS12_BORAP	*-**	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf02211g01007.1	sp|Q8L7S4|MP702_ARATH	****	Microtubule-associated protein 70-2	IPR009768 (Microtubule-associated protein 70)	GO:0007010 (cytoskeleton organization), GO:0008017 (microtubule binding)
Niben101Scf05845g01005.1	emb|CDY48661.1|	***-	BnaC07g27480D [Brassica napus]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf07767g00004.1	sp|Q6DA74|PYRI_PECAS	--*-	Aspartate carbamoyltransferase regulatory chain		
Niben101Scf00254g00005.1	AT1G63940.2	*-*-	monodehydroascorbate reductase 6 LENGTH=493		
Niben101Scf03200g01014.1	sp|P25765|CHI12_ORYSJ	****	Chitinase 12	IPR016283 (Glycoside hydrolase, family 19), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process), GO:0008061 (chitin binding), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf03851g00009.1	gb|KEH22053.1|	***-	BZIP transcription factor [Medicago truncatula]		
Niben101Scf10919g00001.1	sp|Q40585|VATL_TOBAC	****	V-type proton ATPase 16 kDa proteolipid subunit	IPR000245 (V-ATPase proteolipid subunit), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf04223g01015.1			Unknown protein		
Niben101Scf10073g00007.1	AT5G58005.1	****	Cytochrome c oxidase, subunit Vib family protein LENGTH=116	IPR003213 (Cytochrome c oxidase, subunit VIb)	GO:0004129 (cytochrome-c oxidase activity), GO:0005739 (mitochondrion)
Niben101Scf11107g00016.1	sp|Q9Y4A5|TRRAP_HUMAN	*-*-	Transformation/transcription domain-associated protein	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf11037g00019.1	sp|O82248|NFYB5_ARATH	****	Nuclear transcription factor Y subunit B-5	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf02853g01012.1	AT2G36850.1	****	glucan synthase-like 8 LENGTH=1904	IPR003440 (Glycosyl transferase, family 48), IPR026899 (1,3-beta-glucan synthase subunit FKS1-like, domain-1)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf07442g01027.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11638g00004.1	AT5G49700.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=276	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf02831g00016.1	AT1G72820.1	***-	Mitochondrial substrate carrier family protein LENGTH=349	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf06280g06013.1	sp|Q67YE6|SAP12_ARATH	****	Zinc finger AN1 domain-containing stress-associated protein 12	IPR000058 (Zinc finger, AN1-type)	GO:0008270 (zinc ion binding)
Niben101Scf09368g06004.1	AT5G65380.1	*-*-	MATE efflux family protein LENGTH=486	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf04980g00023.1	sp|Q6WRG3|CYB_AKOIN	*-*-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal), IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Ctg14931g00002.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04195g01005.1	sp|Q8L868|E1311_ARATH	***-	Glucan endo-1,3-beta-glucosidase 11	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02445g10017.1	sp|P42753|CCD31_ARATH	***-	Cyclin-D3-1	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf01775g01023.1	sp|P49793|NUP98_RAT	*-**	Nuclear pore complex protein Nup98-Nup96	IPR007230 (Peptidase S59, nucleoporin)	GO:0005643 (nuclear pore), GO:0006810 (transport)
Niben101Scf13103g01058.1	sp|A1TZE0|FTSH_MARHV	--**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf04005g00003.1			Unknown protein		
Niben101Scf01520g08017.1	sp|Q3E9C3|RH58_ARATH	--*-	DEAD-box ATP-dependent RNA helicase 58, chloroplastic		
Niben101Scf03377g01010.1	sp|P28178|PK2_DICDI	****	Protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00212g03016.1	sp|Q39688|EP1G_DAUCA	*-*-	Epidermis-specific secreted glycoprotein EP1		
Niben101Scf01847g02022.1	sp|Q28147|PP1R8_BOVIN	*-*-	Nuclear inhibitor of protein phosphatase 1	IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf04122g02005.1	sp|Q05462|RL27_PEA	***-	60S ribosomal protein L27	IPR001141 (Ribosomal protein L27e), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02335g03005.1	sp|Q9ZQI8|NLTL2_ARATH	****	Non-specific lipid-transfer protein-like protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf02479g02009.1			Unknown protein		
Niben101Scf04657g03011.1	sp|Q7XHI9|BH084_ARATH	*-*-	Transcription factor bHLH84	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf12304g01004.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf04500g04001.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05325g00002.1	emb|CDX68674.1|	*-*-	BnaC01g07790D [Brassica napus]		
Niben101Scf08820g00013.1	sp|Q9W0I6|SAC1_DROME	*-**	Phosphatidylinositide phosphatase SAC1	IPR002013 (SAC domain), IPR030069 (Phosphoinositide phosphatase SAC6/7/8)	GO:0042578 (phosphoric ester hydrolase activity), GO:0052866 (phosphatidylinositol phosphate phosphatase activity)
Niben101Scf09955g02009.1	sp|Q9ZUN5|TET2_ARATH	*-*-	Tetraspanin-2	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf04007g04002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00090g01014.1	sp|F4K4J0|THO5B_ARATH	***-	THO complex subunit 5B	IPR019163 (THO complex, subunit 5)	
Niben101Scf08510g01006.1	ref|XP_003589925.1|	***-	ATFP4-like protein [Medicago truncatula]		
Niben101Scf01496g00001.1	sp|Q6DJF8|MET23_XENLA	*-*-	Methyltransferase-like protein 23	IPR019410 (Nicotinamide N-methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01587g02019.1	ref|WP_008310550.1|	***-	Protein of unknown function (DUF3067) [Leptolyngbya sp. PCC 6406]	IPR021420 (Protein of unknown function DUF3067)	
Niben101Scf04122g06001.1	sp|Q657C0|HFA6B_ORYSJ	*-**	Heat stress transcription factor A-6a	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03602g02013.1	emb|CDX77964.1|	***-	BnaA09g31590D [Brassica napus]	IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf01037g11007.1	sp|Q9LYS9|B561H_ARATH	*-*-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain)	
Niben101Scf06413g02005.1	sp|Q9SGH2|MBD9_ARATH	*-**	Methyl-CpG-binding domain-containing protein 9	IPR001487 (Bromodomain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03817g07006.1	sp|Q5RAJ5|STK36_PONAB	*-**	Serine/threonine-protein kinase 36	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03503g01002.1	sp|Q8IXT1|DDIAS_HUMAN	--*-	DNA damage-induced apoptosis suppressor protein	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf02638g04003.1			Unknown protein		
Niben101Scf07578g00009.1	AT4G09060.2	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=367		
Niben101Scf02122g01007.1	sp|B4S437|GCST_PROA2	***-	Aminomethyltransferase	IPR006222 (Glycine cleavage T-protein-like, N-terminal), IPR017703 (YgfZ/GcvT conserved site), IPR027266 (GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1), IPR029043 (Glycine cleavage T-protein/YgfZ, C-terminal domain)	GO:0005515 (protein binding)
Niben101Scf09004g00001.1	sp|Q40478|ERF5_TOBAC	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf33237g00001.1	sp|Q75HY5|RSLE3_ORYSJ	--*-	Zinc finger BED domain-containing protein RICESLEEPER 3	IPR003656 (Zinc finger, BED-type)	GO:0003677 (DNA binding)
Niben101Scf07314g03002.1	sp|Q9WTL2|RAB25_MOUSE	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf05955g00010.1	gb|AES68921.2|	*-*-	ERD (early-responsive to dehydration stress) family protein [Medicago truncatula]		
Niben101Scf08753g02035.1	sp|Q9SB04|ARR5_ARATH	*-*-	Two-component response regulator ARR5	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf00324g02004.1	sp|Q9SN58|UGE5_ARATH	****	UDP-glucose 4-epimerase 5	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005886 (UDP-glucose 4-epimerase GalE), IPR008089 (Nucleotide sugar epimerase), IPR025308 (UDP-glucose 4-epimerase C-terminal domain)	GO:0003824 (catalytic activity), GO:0003978 (UDP-glucose 4-epimerase activity), GO:0005975 (carbohydrate metabolic process), GO:0006012 (galactose metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf02321g00027.1	sp|Q9LKW9|NHX7_ARATH	***-	Sodium/hydrogen exchanger 7	IPR006153 (Cation/H+ exchanger), IPR014710 (RmlC-like jelly roll fold), IPR018422 (Cation/H+ exchanger, CPA1 family)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01982g02003.1	sp|Q67XQ0|Y4424_ARATH	***-	DUF21 domain-containing protein	IPR000644 (CBS domain), IPR002550 (Domain of unknown function DUF21)	
Niben101Scf02156g05001.1	sp|P51193|PSAF_PORPU	****	Photosystem I reaction center subunit III	IPR003666 (Photosystem I PsaF, reaction centre subunit III)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf03965g03003.1	ref|NP_001046368.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf06623g00012.1	sp|Q05B92|TFE3_BOVIN	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00013g03014.1			Unknown protein		
Niben101Scf02949g06004.1	sp|Q13247|SRSF6_HUMAN	--*-	Serine/arginine-rich splicing factor 6	IPR007201 (RNA recognition motif 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05912g01016.1	sp|P0ABI1|CLPA_ECO57	****	ATP-dependent Clp protease ATP-binding subunit ClpA	IPR001270 (ClpA/B family), IPR001943 (UVR domain), IPR004176 (Clp, N-terminal), IPR019489 (Clp ATPase, C-terminal), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028299 (ClpA/B, conserved site 2)	GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0019538 (protein metabolic process)
Niben101Scf04181g00026.1	AT3G51880.2	*-*-	high mobility group B1 LENGTH=185	IPR009071 (High mobility group box domain)	
Niben101Scf02430g06002.1			Unknown protein		
Niben101Scf01927g04007.1	ref|XP_002514207.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF48161.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03923g08007.1	gb|KEH42627.1|	*-*-	transcription factor jumonji (JmjC) domain protein [Medicago truncatula]		
Niben101Scf03689g01014.1	gb|ABF93803.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Ctg13296g00001.1	AT3G54700.1	****	phosphate transporter 1;7 LENGTH=535	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf33389g00001.1	sp|B6VJS4|ROMT_VITVI	****	Trans-resveratrol di-O-methyltransferase	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf03953g02017.1	gb|AAA80307.1|	***-	orf154 [Petunia axillaris subsp. parodii]		
Niben101Scf08665g02011.1	AT2G45850.1	***-	AT hook motif DNA-binding family protein LENGTH=348	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf06221g04010.1	sp|Q1MIK4|NUOK_RHIL3	****	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf02074g06075.1	sp|A5E948|ATPA_BRASB	****	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf14318g00004.1	sp|Q54KL5|WDR5_DICDI	--*-	WD repeat-containing protein 5 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00226g02016.1	sp|Q84TG3|PUB23_ARATH	--*-	E3 ubiquitin-protein ligase PUB23	IPR011989 (Armadillo-like helical)	
Niben101Scf06525g00027.1	sp|Q9NGQ2|KIF1_DICDI	*-**	Kinesin-related protein 1	IPR001752 (Kinesin motor domain), IPR010544 (Kinesin-related conserved domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf05160g00006.1	sp|Q9STF9|PP266_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01634g04009.1	AT3G57280.1	***-	Transmembrane proteins 14C LENGTH=226	IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane)
Niben101Scf02929g03015.1	sp|P68540|COX1_AEGCO	****	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023615 (Cytochrome c oxidase, subunit I, copper-binding site), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03706g02020.1	AT3G16850.1	*-*-	Pectin lyase-like superfamily protein LENGTH=455	IPR011050 (Pectin lyase fold/virulence factor)	
Niben101Scf01447g01031.1	sp|Q12873|CHD3_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 3	IPR009057 (Homeodomain-like), IPR009462 (Domain of unknown function DUF1086), IPR009463 (Domain of unknown function DUF1087), IPR012957 (CHD, C-terminal 2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf06890g01008.1	AT1G20060.1	*-**	ATP binding microtubule motor family protein LENGTH=970	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf09551g00005.1	sp|Q9ASZ8|PPR37_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR003034 (SAP domain)	
Niben101Scf36071g00005.1			Unknown protein		
Niben101Ctg14713g00001.1	emb|CDY34348.1|	*-*-	BnaA01g14510D [Brassica napus]		
Niben101Scf08737g00008.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf15965g00017.1	sp|Q9LUR0|CNDH2_ARATH	***-	Condensin-2 complex subunit H2	IPR009378 (Non-SMC condensin II complex, subunit H2-like)	
Niben101Scf03979g05027.1	AT2G18950.1	***-	homogentisate phytyltransferase 1 LENGTH=393	IPR000537 (UbiA prenyltransferase family)	GO:0004659 (prenyltransferase activity), GO:0016021 (integral component of membrane)
Niben101Scf04666g00003.1	sp|P29060|CHIA_TOBAC	***-	Acidic endochitinase	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06280g02002.1	sp|Q9LFR1|PTR50_ARATH	***-	Protein NRT1/ PTR FAMILY 5.8	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02929g05021.1	sp|Q2MIC5|YCF2_SOLBU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf02160g06008.1	sp|Q07060|ATP9_PETSP	****	ATP synthase subunit 9, mitochondrial	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf04455g03002.1	gb|ABS79378.1|	***-	At4g40080-like protein [Arabidopsis lyrata subsp. petraea]	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding)
Niben101Scf02407g04010.1	sp|Q54YW1|ELMOA_DICDI	*-*-	ELMO domain-containing protein A	IPR006816 (Engulfment/cell motility, ELMO)	GO:0005856 (cytoskeleton), GO:0006909 (phagocytosis)
Niben101Scf10613g00004.1	ref|XP_003610227.1|	*-*-	Ycf68 [Medicago truncatula]	IPR022546 (Uncharacterised protein family Ycf68)	
Niben101Scf01190g03004.1	gb|AAM63262.1|	*-*-	enhanced disease susceptibility 5 [Arabidopsis thaliana]		
Niben101Scf05583g00011.1	sp|Q8TX36|RL22_METKA	****	50S ribosomal protein L22	IPR001063 (Ribosomal protein L22/L17)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf04277g00004.1	AT4G32440.2	***-	Plant Tudor-like RNA-binding protein LENGTH=393	IPR005491 (EMSY N-terminal), IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf00419g01007.1	sp|A9WSU3|RL6_RENSM	***-	50S ribosomal protein L6	IPR000702 (Ribosomal protein L6)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf06345g02004.1	sp|O66937|MALQ_AQUAE	****	4-alpha-glucanotransferase	IPR003385 (Glycoside hydrolase, family 77), IPR017853 (Glycoside hydrolase superfamily)	GO:0004134 (4-alpha-glucanotransferase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00286g03005.1	sp|B0R660|RS19_HALS3	****	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf00873g01013.1	AT1G03760.1	*-*-	Prefoldin chaperone subunit family protein LENGTH=391	IPR009053 (Prefoldin)	
Niben101Scf01220g00011.1			Unknown protein		
Niben101Scf05405g06012.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02837g07021.1	sp|B8I3K7|RISB_CLOCE	****	6,7-dimethyl-8-ribityllumazine synthase	IPR002180 (6,7-dimethyl-8-ribityllumazine synthase)	GO:0009231 (riboflavin biosynthetic process), GO:0009349 (riboflavin synthase complex)
Niben101Scf11491g01019.1	AT2G07820.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=88		
Niben101Scf07242g04005.1	AT5G67320.1	***-	WD-40 repeat family protein LENGTH=613	IPR006594 (LisH dimerisation motif), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf10095g00007.1	AT5G56180.1	*-*-	actin-related protein 8 LENGTH=471	IPR001810 (F-box domain), IPR004000 (Actin family)	GO:0005515 (protein binding)
Niben101Scf03076g02002.1	AT2G35140.1	*-*-	DCD (Development and Cell Death) domain protein LENGTH=879	IPR013989 (Development/cell death domain)	
Niben101Scf01727g08015.1	AT3G54200.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=235	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf03445g05004.1	sp|B8D6B2|EF2_DESK1	*-*-	Elongation factor 2	IPR000640 (Translation elongation factor EFG, V domain), IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR009022 (Elongation factor G, III-V domain), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf00854g10042.1	sp|P09003|MI25_TOBAC	*-**	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf07253g01021.1	sp|Q8VCW8|ACSF2_MOUSE	*-*-	Acyl-CoA synthetase family member 2, mitochondrial	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf08426g02001.1	emb|CDY11596.1|	***-	BnaC06g31430D [Brassica napus]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf05250g02013.1	sp|Q67A25|NCS_THLFG	***-	S-norcoclaurine synthase	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf01228g04007.1	sp|Q8VY22|TBL38_ARATH	***-	Protein trichome birefringence-like 38	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf01133g15001.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR000589 (Ribosomal protein S15), IPR008543 (Uncharacterised protein family Ycf2)	GO:0003735 (structural constituent of ribosome), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0009507 (chloroplast)
Niben101Scf01182g07007.1	sp|P81370|TLP_ACTDE	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf03861g00008.1	sp|Q9LE15|PER4_ARATH	****	Peroxidase 4	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00135g03019.1	AT2G21210.1	***-	SAUR-like auxin-responsive protein family LENGTH=98	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf06869g00001.1	sp|Q6DYE5|U496K_ARATH	***-	UPF0496 protein	IPR007749 (Protein of unknown function DUF677)	
Niben101Scf04436g13010.1	ref|XP_007049519.1|	*-*-	Mediator of RNA polymerase II transcription subunit 19 [Theobroma cacao] gb|EOX93676.1| Mediator of RNA polymerase II transcription subunit 19 [Theobroma cacao]		
Niben101Scf03254g05001.1	sp|Q7XYY2|MED25_ARATH	*-*-	Mediator of RNA polymerase II transcription subunit 25	IPR021419 (Mediator complex, subunit Med25, von Willebrand factor type A)	
Niben101Scf07844g00005.1	sp|Q9LEX0|P2A13_ARATH	***-	F-box protein PP2-A13	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf05378g03025.1	sp|Q0TTK8|FTSH_CLOP1	****	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR005936 (Peptidase, FtsH), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf09115g00015.1	sp|F4K657|BL1S2_ARATH	***-	Biogenesis of lysosome-related organelles complex 1 subunit 2	IPR019269 (Biogenesis of lysosome-related organelles complex-1, subunit 2)	
Niben101Scf00491g04006.1	ref|XP_007036453.1|	*-*-	ATP-dependent helicase/nuclease subunit A isoform 1 [Theobroma cacao] gb|EOY20954.1| ATP-dependent helicase/nuclease subunit A isoform 1 [Theobroma cacao]		
Niben101Scf08443g01008.1	sp|Q8L6Y1|UBP14_ARATH	****	Ubiquitin carboxyl-terminal hydrolase 14	IPR001607 (Zinc finger, UBP-type), IPR009060 (UBA-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR028889 (Ubiquitin specific protease domain)	GO:0005515 (protein binding), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0008270 (zinc ion binding), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf11791g00012.1			Unknown protein		
Niben101Scf02944g02003.1	sp|Q27450|CYP1_BRUMA	*-**	Peptidyl-prolyl cis-trans isomerase 1	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf11535g01033.1	sp|Q4KLU2|PRP39_XENLA	****	Pre-mRNA-processing factor 39	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Scf05767g03024.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08298g03010.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04015g01011.1	AT5G27380.1	****	glutathione synthetase 2 LENGTH=539	IPR005615 (Glutathione synthase, eukaryotic), IPR013816 (ATP-grasp fold, subdomain 2), IPR016185 (Pre-ATP-grasp domain)	GO:0004363 (glutathione synthase activity), GO:0005524 (ATP binding), GO:0006750 (glutathione biosynthetic process), GO:0016874 (ligase activity)
Niben101Scf02771g03011.1	AT5G15050.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=434	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf09445g03004.1			Unknown protein		
Niben101Scf01272g00008.1			Unknown protein		
Niben101Scf09099g00029.1	sp|Q9LJR7|XTH3_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 3	IPR010713 (Xyloglucan endo-transglycosylase, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf09867g02013.1	sp|Q5R5F8|PANK4_PONAB	*-*-	Pantothenate kinase 4	IPR016949 (Uncharacterised conserved protein UCP030210)	
Niben101Scf04114g01024.1	ref|YP_009091709.1|	***-	orf109 (mitochondrion) [Panax ginseng] gb|AHJ81034.1| orf109 (mitochondrion) [Panax ginseng]		
Niben101Scf11738g00026.1	ref|WP_031001258.1|	*-**	ATP-binding protein [Streptomyces sp. NRRL WC-3773]	IPR000157 (Toll/interleukin-1 receptor homology (TIR) domain), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0043531 (ADP binding)
Niben101Scf11245g00001.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf04117g01003.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02761g02002.1	sp|Q7VKA1|MUTS_HAEDU	*-**	DNA mismatch repair protein MutS	IPR007696 (DNA mismatch repair protein MutS, core)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf10384g01011.1	AT5G52370.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=142		
Niben101Scf01866g03012.1	dbj|BAJ09646.1|	****	GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase [Nicotiana benthamiana]	IPR000422 (3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB), IPR000926 (GTP cyclohydrolase II, RibA), IPR016299 (Riboflavin biosynthesis protein RibBA)	GO:0003935 (GTP cyclohydrolase II activity), GO:0008686 (3,4-dihydroxy-2-butanone-4-phosphate synthase activity), GO:0009231 (riboflavin biosynthetic process)
Niben101Scf06583g04006.1	sp|P85076|PME_ACTDE	****	Pectinesterase	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf06528g03001.1	AT4G31820.1	***-	Phototropic-responsive NPH3 family protein LENGTH=571	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain), IPR029961 (BTB/POZ domain-containing protein NPY1)	GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0048513 (organ development), GO:0060918 (auxin transport)
Niben101Scf10810g01008.1	sp|Q5ZKD5|RRP12_CHICK	*-*-	RRP12-like protein	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04505g00003.1	sp|P93755|C3H30_ARATH	***-	Zinc finger CCCH domain-containing protein 30	IPR000571 (Zinc finger, CCCH-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf00293g02006.1	sp|O88623|UBP2_MOUSE	*-**	Ubiquitin carboxyl-terminal hydrolase 2	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf00745g00018.1	sp|O67367|YBEY_AQUAE	*-*-	Endoribonuclease YbeY	IPR001757 (P-type ATPase), IPR002036 (Endoribonuclease YbeY), IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023091 (Metalloprotease catalytic domain, predicted), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0004222 (metalloendopeptidase activity), GO:0006364 (rRNA processing), GO:0008152 (metabolic process), GO:0016021 (integral component of membrane), GO:0016787 (hydrolase activity)
Niben101Scf00618g01017.1			Unknown protein		
Niben101Scf11767g02026.1	sp|Q9LRR6|CID9_ARATH	*-**	Polyadenylate-binding protein-interacting protein 9	IPR009818 (Ataxin-2, C-terminal), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf17036g00008.1	sp|Q9C9V6|Y1790_ARATH	*-*-	BTB/POZ domain-containing protein	IPR027356 (NPH3 domain), IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0009958 (positive gravitropism)
Niben101Scf02406g04040.1	sp|Q39111|GAOX2_ARATH	--*-	Gibberellin 20 oxidase 2	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf01759g05004.1			Unknown protein		
Niben101Scf06535g02008.1	sp|P53756|PDR18_YEAST	*-**	ABC transporter ATP-binding protein/permease PDR18	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf01326g01018.1	sp|Q9WZZ7|GLGA_THEMA	*-*-	Glycogen synthase	IPR001296 (Glycosyl transferase, family 1), IPR013534 (Starch synthase, catalytic domain)	GO:0009058 (biosynthetic process)
Niben101Scf04819g03016.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03185g00003.1	sp|Q5B4C9|ATG26_EMENI	*-*-	Sterol 3-beta-glucosyltransferase	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase), IPR004276 (Glycosyltransferase family 28, N-terminal domain)	GO:0005975 (carbohydrate metabolic process), GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups), GO:0030259 (lipid glycosylation)
Niben101Scf03991g00007.1	sp|Q9XEX2|PRX2B_ARATH	***-	Peroxiredoxin-2B	IPR012336 (Thioredoxin-like fold)	GO:0016491 (oxidoreductase activity)
Niben101Ctg15308g00001.1	AT3G19190.1	*-**	autophagy 2 LENGTH=1839	IPR026849 (Autophagy-related protein 2)	GO:0006914 (autophagy)
Niben101Scf01978g00011.1	sp|Q9SYD6|MATE1_ARATH	***-	MATE efflux family protein 1	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00488g04010.1	AT3G47890.1	****	Ubiquitin carboxyl-terminal hydrolase-related protein LENGTH=1568	IPR006865 (Domain of unknown function DUF629), IPR006866 (Domain of unknown function DUF627, N-terminal), IPR007087 (Zinc finger, C2H2), IPR011990 (Tetratricopeptide-like helical domain), IPR028889 (Ubiquitin specific protease domain)	GO:0005515 (protein binding), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf07147g03011.1	AT5G55630.1	*-*-	Outward rectifying potassium channel protein LENGTH=363	IPR011992 (EF-hand domain pair)	
Niben101Scf04392g05006.1			Unknown protein		
Niben101Scf11091g00001.1	sp|Q9M0I2|EXPB3_ARATH	***-	Expansin-B3	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0019953 (sexual reproduction)
Niben101Scf00419g08003.1	AT3G12120.1	***-	fatty acid desaturase 2 LENGTH=383		
Niben101Scf06734g00009.1	AT1G23890.2	*-*-	NHL domain-containing protein LENGTH=400		
Niben101Scf05469g01002.1	emb|CDY43328.1|	***-	BnaC03g59000D [Brassica napus]	IPR007789 (Protein of unknown function DUF688)	
Niben101Scf00596g01005.1	sp|O24160|TGA21_TOBAC	****	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06256g00001.1	sp|Q74CR8|ACP_GEOSL	***-	Acyl carrier protein	IPR003231 (Acyl carrier protein (ACP)), IPR009081 (Acyl carrier protein-like)	GO:0006633 (fatty acid biosynthetic process)
Niben101Scf11341g00021.1	AT5G23060.1	*-*-	calcium sensing receptor LENGTH=387	IPR001763 (Rhodanese-like domain)	
Niben101Scf22954g00006.1	AT4G13330.1	*-*-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=428		
Niben101Scf04253g03010.1	AT3G24240.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf05004g01007.1	AT4G31150.1	*-**	endonuclease V family protein LENGTH=277	IPR007581 (Endonuclease V)	GO:0004519 (endonuclease activity), GO:0006281 (DNA repair)
Niben101Scf02819g03009.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf00113g03002.1	sp|Q56XP9|ERFL1_ARATH	*-**	Ethylene-responsive transcription factor-like protein	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03289g02002.1	AT5G22870.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=207	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf02124g01022.1	AT5G15350.1	*-*-	early nodulin-like protein 17 LENGTH=172	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf02658g03020.1	sp|Q9SCU9|BGA13_ARATH	***-	Beta-galactosidase 13	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf07761g00003.1	sp|Q9FZ70|FDL1_ARATH	*-*-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00126g06015.1	sp|Q8L751|ORP1C_ARATH	***-	Oxysterol-binding protein-related protein 1C	IPR000648 (Oxysterol-binding protein), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf16768g01001.1	emb|CDY00857.1|	***-	BnaCnng00570D [Brassica napus]		
Niben101Scf06513g00008.1	ref|XP_002523546.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38885.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf26075g00003.1	prf||1808322A	****	stearoyl-acyl carrier protein desaturase	IPR005067 (Fatty acid desaturase, type 2), IPR009078 (Ferritin-like superfamily)	GO:0006631 (fatty acid metabolic process), GO:0016491 (oxidoreductase activity), GO:0045300 (acyl-[acyl-carrier-protein] desaturase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf13183g00005.1	sp|Q08891|FACR2_ARATH	*-**	Fatty acyl-CoA reductase 2	IPR016040 (NAD(P)-binding domain), IPR026055 (Fatty acyl-CoA reductase)	GO:0080019 (fatty-acyl-CoA reductase (alcohol-forming) activity)
Niben101Scf00991g00008.1	ref|WP_032853289.1|	****	glycosyl hydrolase family 43 [Bacteroides sp. D2]	IPR006710 (Glycoside hydrolase, family 43), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02720g10006.1	AT3G48240.1	*-*-	Octicosapeptide/Phox/Bem1p family protein LENGTH=180	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf04943g01006.1			Unknown protein		
Niben101Scf00343g04008.1	sp|Q9SZL8|FRS5_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 5		
Niben101Scf00491g04005.1	sp|Q5VYY2|LIPM_HUMAN	***-	Lipase member M	IPR006693 (Partial AB-hydrolase lipase domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf01699g00004.1	AT5G11900.1	****	Translation initiation factor SUI1 family protein LENGTH=198	IPR005873 (Density-regulated protein DRP1)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf03478g00003.1	emb|CDX72764.1|	--*-	BnaC06g32120D [Brassica napus]		
Niben101Scf08899g00014.1			Unknown protein		
Niben101Scf34696g00003.1	sp|P27496|CB25_TOBAC	***-	Chlorophyll a-b binding protein 50, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf00421g01024.1	emb|CDY63420.1|	***-	BnaCnng42080D [Brassica napus]		
Niben101Scf05133g05005.1	sp|Q54YW1|ELMOA_DICDI	*-*-	ELMO domain-containing protein A	IPR006816 (Engulfment/cell motility, ELMO)	GO:0005856 (cytoskeleton), GO:0006909 (phagocytosis)
Niben101Scf03643g02055.1	ref|XP_003588355.1|	*-*-	Mitochondrial protein, putative [Medicago truncatula]		
Niben101Scf25692g00001.1			Unknown protein		
Niben101Ctg15987g00002.1	AT4G23895.1	***-	Pleckstrin homology (PH) domain-containing protein LENGTH=247	IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf05548g02013.1	sp|Q9C5Z2|EIF3H_ARATH	*-**	Eukaryotic translation initiation factor 3 subunit H	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR027524 (Eukaryotic translation initiation factor 3 subunit H)	GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf03708g03004.1	sp|Q0CGL5|NACB_ASPTN	***-	Nascent polypeptide-associated complex subunit beta	IPR002715 (Nascent polypeptide-associated complex NAC domain)	
Niben101Scf02360g01005.1	sp|Q9M1C7|AB9C_ARATH	*-*-	ABC transporter C family member 9		
Niben101Scf04701g00008.1			Unknown protein		
Niben101Scf10219g00027.1	gb|KEH20669.1|	***-	alpha/beta-hydrolase superfamily protein [Medicago truncatula]	IPR007751 (Domain of unknown function DUF676, lipase-like), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01188g07006.1	dbj|BAB01940.1|	--*-	non-LTR retrolelement reverse transcriptase-like protein [Arabidopsis thaliana]		
Niben101Scf14440g00012.1	AT1G15760.1	***-	Sterile alpha motif (SAM) domain-containing protein LENGTH=202	IPR013761 (Sterile alpha motif/pointed domain)	
Niben101Scf19171g01030.1	AT5G43830.1	***-	Aluminium induced protein with YGL and LRDR motifs LENGTH=251	IPR024286 (Domain of unknown function DUF3700), IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf02972g00002.1	ref|WP_009634071.1|	*-*-	Protein of unknown function (DUF3593) [Synechocystis sp. PCC 7509]	IPR021995 (Protein of unknown function DUF3593)	
Niben101Scf07937g03021.1	sp|O22827|MOC2B_ARATH	****	Molybdopterin synthase catalytic subunit	IPR003448 (Molybdopterin biosynthesis MoaE)	GO:0005829 (cytosol), GO:0006777 (Mo-molybdopterin cofactor biosynthetic process), GO:0019008 (molybdopterin synthase complex), GO:0030366 (molybdopterin synthase activity)
Niben101Scf15279g00002.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01841g02004.1	sp|Q5JNJ5|ENL1_ORYSJ	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Ctg13757g00001.1	sp|Q9SH26|PP102_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02309g03022.1	sp|Q6FZD5|RS14_BARQU	*-*-	30S ribosomal protein S14	IPR001209 (Ribosomal protein S14)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf11516g00011.1	sp|Q9S9U6|1A111_ARATH	***-	1-aminocyclopropane-1-carboxylate synthase 11	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf06996g01011.1	sp|Q9SUJ1|SYP43_ARATH	***-	Syntaxin-43	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf04730g01002.1	sp|Q8FK82|AES_ECOL6	--*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf08531g03028.1	sp|A0JNG4|RN207_BOVIN	--*-	RING finger protein 207	IPR010652 (Protein of unknown function DUF1232), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf07498g03011.1	AT1G76270.1	*-*-	O-fucosyltransferase family protein LENGTH=572	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf02575g02003.1	ref|NP_565550.1|	****	protein RER1C1 [Arabidopsis thaliana] RecName: Full=Protein RER1C; Short=AtRER1C [Arabidopsis thaliana] dbj|BAA33862.1| AtRER1C [Arabidopsis thaliana] gb|AAL47450.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAB87102.2| putative integral membrane protein [Arabidopsis thaliana] gb|AAM19906.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAM63458.1| putative integral membrane protein [Arabidopsis thaliana] gb|AEC07439.1| protein RER1C1 [Arabidopsis thaliana]	IPR004932 (Retrieval of early ER protein Rer1)	GO:0016021 (integral component of membrane)
Niben101Scf03253g00001.1	sp|Q96MW5|COG8_HUMAN	****	Conserved oligomeric Golgi complex subunit 8	IPR007255 (Conserved oligomeric Golgi complex subunit 8), IPR016159 (Cullin repeat-like-containing domain)	GO:0017119 (Golgi transport complex)
Niben101Scf02090g04020.1	AT4G09670.1	****	Oxidoreductase family protein LENGTH=362	IPR016040 (NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity)
Niben101Scf03706g03008.1	AT5G27000.1	****	kinesin 4 LENGTH=987	IPR001715 (Calponin homology domain), IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00490g00003.1	emb|CDY09808.1|	***-	BnaC09g43530D [Brassica napus]		
Niben101Scf10384g02003.1	sp|Q76LC6|RBM24_DANRE	--**	RNA-binding protein 24	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05440g03005.1	sp|Q9BSU3|NAA11_HUMAN	--**	N-alpha-acetyltransferase 11	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf07554g01011.1	gb|KEH19239.1|	-**-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf04301g01001.1	gb|AAO72598.1|	*-*-	myosin-like protein [Oryza sativa Japonica Group] gb|AAO72684.1| putative myosin heavy chain [Oryza sativa Japonica Group]		
Niben101Scf00878g04013.1	sp|Q8GXL3|SPL8_ARATH	****	Squamosa promoter-binding-like protein 8	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf08728g00004.1	dbj|BAH57266.1|	--*-	[Arabidopsis thaliana]	IPR019181 (Anticodon-binding domain)	
Niben101Scf07823g00031.1	sp|Q9SB00|PHR_ARATH	****	Deoxyribodipyrimidine photo-lyase	IPR008148 (DNA photolyase, class 2)	GO:0003904 (deoxyribodipyrimidine photo-lyase activity), GO:0003913 (DNA photolyase activity), GO:0006281 (DNA repair)
Niben101Scf00854g07075.1			Unknown protein		
Niben101Scf00710g00006.1	emb|CDY31738.1|	--*-	BnaA04g16740D [Brassica napus]		
Niben101Scf02429g07035.1	sp|O65238|Y5537_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001264 (Glycosyl transferase, family 51), IPR001480 (Bulb-type lectin domain), IPR023346 (Lysozyme-like domain)	
Niben101Scf10316g03012.1	pir||S14115	*-*-	NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion		
Niben101Scf03145g01006.1	sp|P81391|MYB05_ANTMA	*-*-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01623g18032.1	sp|Q6RI45|BRWD3_HUMAN	*-*-	Bromodomain and WD repeat-containing protein 3	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf18725g00006.1	sp|Q9S9T7|VP282_ARATH	***-	Vacuolar protein sorting-associated protein 28 homolog 2	IPR007143 (Vacuolar protein sorting-associated, VPS28)	
Niben101Scf00449g06008.1	sp|P02827|HSP70_XENLA	***-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf15538g00016.1	sp|Q8Y016|RLMB_RALSO	--**	23S rRNA (guanosine-2'-O-)-methyltransferase RlmB	IPR029028 (Alpha/beta knot methyltransferases)	GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0008173 (RNA methyltransferase activity)
Niben101Scf11071g02007.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03018g18010.1			Unknown protein		
Niben101Scf02911g06011.1	sp|Q9H9S4|CB39L_HUMAN	****	Calcium-binding protein 39-like	IPR013878 (Mo25-like)	GO:0005488 (binding)
Niben101Scf07070g02010.1	AT3G01420.1	*-**	Peroxidase superfamily protein LENGTH=639	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04724g06004.1			Unknown protein		
Niben101Scf14697g02001.1	sp|Q9M612|NACA_PINTA	***-	Nascent polypeptide-associated complex subunit alpha-like protein	IPR016641 (Nascent polypeptide-associated complex subunit alpha)	GO:0005515 (protein binding)
Niben101Scf07477g02005.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR000858 (S-locus glycoprotein), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR029469 (PAN-4 domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf02564g01013.1			Unknown protein		
Niben101Scf10095g02004.1	AT5G56140.1	****	RNA-binding KH domain-containing protein LENGTH=315	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf00219g00005.1	sp|Q86V35|CABP7_HUMAN	--**	Calcium-binding protein 7	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf11895g02005.1	sp|Q9S7T8|SPZX_ARATH	*-*-	Serpin-ZX	IPR000215 (Serpin family), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf01073g07013.1	sp|Q9LU92|TGT4_ARATH	***-	Trihelix transcription factor GT-4		
Niben101Scf12852g03016.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00436g05003.1	sp|P22233|SODC_SPIOL	****	Superoxide dismutase [Cu-Zn]	IPR001424 (Superoxide dismutase, copper/zinc binding domain)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00854g03030.1			Unknown protein		
Niben101Scf10781g00012.1	AT1G58370.1	*-**	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein LENGTH=917	IPR008979 (Galactose-binding domain-like)	GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf00494g03004.1			Unknown protein		
Niben101Scf00453g03003.1	sp|O52538|CAH_PECCA	***-	Carbonic anhydrase	IPR001148 (Alpha carbonic anhydrase), IPR023561 (Carbonic anhydrase, alpha-class)	
Niben101Scf01927g03005.1	AT3G16490.1	***-	IQ-domain 26 LENGTH=389	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf22403g00003.1	ref|XP_007029572.1|	*-*-	Tetratricopeptide repeat-like superfamily protein isoform 9 [Theobroma cacao] gb|EOY10074.1| Tetratricopeptide repeat-like superfamily protein isoform 9 [Theobroma cacao]		
Niben101Scf00573g05005.1	sp|A9WFT9|PDXS_CHLAA	****	Pyridoxal biosynthesis lyase PdxS	IPR001852 (Pyridoxine biosynthesis protein), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0042823 (pyridoxal phosphate biosynthetic process)
Niben101Scf02094g00002.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf14876g00005.1			Unknown protein		
Niben101Scf02218g01010.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf04018g05006.1	sp|Q5E9Z7|RPC4_BOVIN	*-**	DNA-directed RNA polymerase III subunit RPC4	IPR007811 (DNA-directed RNA polymerase III subunit RPC4)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005666 (DNA-directed RNA polymerase III complex), GO:0006383 (transcription from RNA polymerase III promoter)
Niben101Scf02798g00005.1	sp|P15688.2|NU2M_BETVU	*-*-	RecName: Full=NADH-ubiquinone oxidoreductase chain 2; AltName: Full=NADH dehydrogenase subunit 2 (mitochondrion) [Beta vulgaris] emb|CAA34728.1| NADH:ubiquinone reductase subunit 2 [Beta vulgaris subsp. vulgaris]		
Niben101Scf00438g02011.1	sp|Q7VVX8|HEMH_BORPE	--*-	Ferrochelatase		
Niben101Scf08776g00017.1	sp|Q9FXA4|PUB26_ARATH	--*-	U-box domain-containing protein 26	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00862g00016.1	sp|Q9ZVD0|SRRT_ARATH	***-	Serrate RNA effector molecule	IPR007042 (Arsenite-resistance protein 2), IPR021933 (Protein of unknown function DUF3546)	GO:0046872 (metal ion binding)
Niben101Scf03969g02010.1	emb|CDY08223.1|	***-	BnaA05g13960D [Brassica napus]		
Niben101Scf08044g02007.1	AT3G49590.3	***-	Autophagy-related protein 13 LENGTH=618	IPR018731 (Autophagy-related protein 13)	
Niben101Scf00120g02003.1	sp|Q0IIS3|EPHX3_XENTR	*-*-	Epoxide hydrolase 3	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf06627g00001.1	AT4G15240.1	*-*-	Protein of unknown function (DUF604) LENGTH=488	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf01313g00015.1			Unknown protein		
Niben101Scf00687g08016.1	ref|XP_007051123.1|	--*-	HIT zinc finger,PAPA-1-like conserved region isoform 3 [Theobroma cacao] gb|EOX95280.1| HIT zinc finger,PAPA-1-like conserved region isoform 3 [Theobroma cacao]		
Niben101Scf03471g01013.1	sp|P40282|H2A_PLAFA	***-	Histone H2A	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf00542g02006.1	AT1G29500.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01999g07009.1	sp|Q88V96|MNMA_LACPL	--*-	tRNA-specific 2-thiouridylase MnmA	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf08635g04015.1	sp|B6SGC5|CNR6_MAIZE	***-	Cell number regulator 6	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf15451g00001.1	sp|Q8LDC8|ERF92_ARATH	****	Ethylene-responsive transcription factor 1B	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06923g00002.1	AT3G60390.1	***-	homeobox-leucine zipper protein 3 LENGTH=315	IPR003106 (Leucine zipper, homeobox-associated), IPR006712 (HD-ZIP protein, N-terminal), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01181g03007.1	sp|Q9LJQ5|RTNLI_ARATH	*-*-	Reticulon-like protein B9	IPR003388 (Reticulon)	
Niben101Scf06413g02006.1	AT1G29500.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01826g05012.1	AT1G65800.1	****	receptor kinase 2 LENGTH=847	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021820 (S-locus receptor kinase, C-terminal)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02509g03007.1	sp|P81395|MYB30_ANTMA	*-*-	Myb-related protein 330	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05993g01021.1	sp|A5DSZ3|PURA_LODEL	*-**	Adenylosuccinate synthetase	IPR001114 (Adenylosuccinate synthetase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004019 (adenylosuccinate synthase activity), GO:0005525 (GTP binding), GO:0006164 (purine nucleotide biosynthetic process)
Niben101Scf00693g02020.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02737g00001.1	sp|Q84J37|LAC15_ARATH	***-	Laccase-15	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf22469g00003.1	AT3G26310.1	***-	cytochrome P450, family 71, subfamily B, polypeptide 35 LENGTH=500	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02021g00003.1	sp|Q39T85|DER_GEOMG	--*-	GTPase Der	IPR013785 (Aldolase-type TIM barrel), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003824 (catalytic activity)
Niben101Scf01858g01005.1	sp|Q4R327|FBX24_MACFA	--*-	F-box only protein 24	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01228g01019.1	tpg|DAA57596.1|	*-*-	TPA: hypothetical protein ZEAMMB73_569368 [Zea mays]		
Niben101Scf00108g03023.1	AT5G56760.1	****	serine acetyltransferase 1;1 LENGTH=312	IPR005881 (Serine O-acetyltransferase)	GO:0005737 (cytoplasm), GO:0006535 (cysteine biosynthetic process from serine), GO:0009001 (serine O-acetyltransferase activity), GO:0016740 (transferase activity)
Niben101Scf07423g01003.1			Unknown protein		
Niben101Scf02420g08013.1	sp|Q6L545|GID1_ORYSJ	***-	Gibberellin receptor GID1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01497g03017.1	AT4G35590.1	***-	RWP-RK domain-containing protein LENGTH=370	IPR003035 (RWP-RK domain)	
Niben101Scf04776g00005.1	sp|Q93ZT5|EDL3_ARATH	***-	EID1-like F-box protein 3		
Niben101Scf02328g00016.1	ref|WP_032074779.1|	***-	alpha/beta hydrolase [Coxiella burnetii]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00381g00002.1	sp|A6QLC7|TPC11_BOVIN	*-*-	Trafficking protein particle complex subunit 11	IPR011990 (Tetratricopeptide-like helical domain), IPR012880 (Domain of unknown function DUF1683, C-terminal), IPR021773 (Foie gras liver health family 1)	GO:0005515 (protein binding)
Niben101Scf01991g03009.1	AT1G67080.1	***-	abscisic acid (aba)-deficient 4 LENGTH=220	IPR025461 (Protein of unknown function DUF4281)	
Niben101Scf06077g01020.1	AT1G20760.1	*-**	Calcium-binding EF hand family protein LENGTH=1019	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf05051g03003.1	gb|KEH20772.1|	*-*-	lysine ketoglutarate reductase trans-splicing protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf00120g01002.1	AT1G48320.1	***-	Thioesterase superfamily protein LENGTH=156	IPR029069 (HotDog domain)	
Niben101Scf03116g04003.1	sp|Q70EW5|PLDA1_CYNCA	*-*-	Phospholipase D alpha 1	IPR015679 (Phospholipase D family)	
Niben101Scf06688g01008.1	sp|Q9SF32|IQD1_ARATH	***-	Protein IQ-DOMAIN 1	IPR025064 (Domain of unknown function DUF4005)	
Niben101Scf03628g01019.1	AT4G09630.1	***-	Protein of unknown function (DUF616) LENGTH=711	IPR006852 (Protein of unknown function DUF616)	
Niben101Scf01664g02019.1	sp|Q9MBA3|RAD17_ARATH	****	Cell cycle checkpoint protein RAD17	IPR004582 (Checkpoint protein Rad17/Rad24), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0007049 (cell cycle)
Niben101Scf00369g03015.1	sp|Q6C044|ATG18_YARLI	***-	Autophagy-related protein 18	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf09325g04001.1	ref|XP_003629913.1|	--*-	ATP synthase subunit-like protein [Medicago truncatula]		
Niben101Ctg13488g00004.1	sp|Q14692|BMS1_HUMAN	*-*-	Ribosome biogenesis protein BMS1 homolog	IPR007034 (Ribosome biogenesis protein BMS1/TSR1, C-terminal)	
Niben101Scf12680g01004.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf18000g00028.1	AT1G72410.2	*-*-	COP1-interacting protein-related LENGTH=1270		
Niben101Scf11260g00009.1	gb|AEW48210.1|	*-*-	disease resistance protein RGH5 [Solanum huancabambense]		
Niben101Scf08627g00004.1	sp|Q9ZNT3|ADF5_ARATH	****	Actin-depolymerizing factor 5	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf07353g02006.1	AT4G01070.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06662g00003.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf18016g00004.1	AT2G42490.1	*-**	Copper amine oxidase family protein LENGTH=776	IPR000269 (Copper amine oxidase)	GO:0005507 (copper ion binding), GO:0008131 (primary amine oxidase activity), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06094g02014.1	AT5G54680.1	***-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=234	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03949g06008.1	gb|ACG38839.1|	***-	snRK1-interacting protein 1 [Zea mays]		
Niben101Scf00220g05017.1	emb|CDY02542.1|	***-	BnaA08g01490D [Brassica napus]		
Niben101Scf04869g05006.1	ref|XP_003598002.1|	***-	Dihydroflavonol-4-reductase [Medicago truncatula] gb|AES68253.1| cinnamyl-alcohol dehydrogenase-like protein [Medicago truncatula]	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf00573g01003.1	AT5G10240.1	****	asparagine synthetase 3 LENGTH=578	IPR006426 (Asparagine synthase, glutamine-hydrolyzing), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004066 (asparagine synthase (glutamine-hydrolyzing) activity), GO:0006529 (asparagine biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf05755g03012.1	sp|Q07488|BCB1_ARATH	*-*-	Blue copper protein	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf01108g01007.1	ref|XP_002529263.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF33095.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06990g00006.1	sp|O48837|LRKS2_ARATH	--*-	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02660g01003.1			Unknown protein		
Niben101Scf07272g01001.1	sp|Q9ZP59|TLP1_ARATH	***-	Tubby-like F-box protein 1	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf06861g00004.1	sp|Q9M081|SC24B_ARATH	****	Protein transport protein Sec24-like	IPR002035 (von Willebrand factor, type A), IPR006895 (Zinc finger, Sec23/Sec24-type), IPR006896 (Sec23/Sec24, trunk domain), IPR012990 (Sec23/Sec24 beta-sandwich), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0006886 (intracellular protein transport), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0008270 (zinc ion binding), GO:0030127 (COPII vesicle coat)
Niben101Scf17922g02017.1	AT1G30300.1	*-*-	Metallo-hydrolase/oxidoreductase superfamily protein LENGTH=324	IPR001279 (Beta-lactamase-like)	
Niben101Scf02237g01002.1	gb|ABR46003.1|	***-	enhanced disease susceptibility 1 [Arabidopsis thaliana]	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf14882g01007.1	gb|KDD74983.1|	****	GTP-binding elongation factor EF-Tu/EF-1A [Helicosporidium sp. ATCC 50920]	IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf06172g01001.1	sp|Q96SZ5|AEDO_HUMAN	****	2-aminoethanethiol dioxygenase	IPR012864 (Cysteamine dioxygenase), IPR014710 (RmlC-like jelly roll fold)	GO:0047800 (cysteamine dioxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01628g00027.1	sp|A5EX70|RPOB_DICNV	--*-	DNA-directed RNA polymerase subunit beta		
Niben101Scf02082g00005.1	sp|Q8LE98|ICR1_ARATH	***-	Interactor of constitutive active ROPs 1		
Niben101Ctg03774g00002.1			Unknown protein		
Niben101Scf13640g01003.1	AT4G19645.1	***-	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein LENGTH=268	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf00276g05004.1	AT2G22560.1	*-*-	Kinase interacting (KIP1-like) family protein LENGTH=947		
Niben101Scf00279g01001.1	sp|P12904|AAKG_YEAST	--*-	5'-AMP-activated protein kinase subunit gamma	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00927g04012.1	sp|Q39262|ZFP3_ARATH	*-*-	Zinc finger protein 3	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf04040g08008.1	emb|CDY19785.1|	*-*-	BnaA09g04380D [Brassica napus]		
Niben101Scf02191g01003.1	AT1G76920.1	***-	F-box family protein LENGTH=374	IPR001810 (F-box domain), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf15817g00016.1	sp|A8SEB0|ATPB_CERDE	****	ATP synthase subunit beta, chloroplastic	IPR005722 (ATPase, F1 complex, beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015986 (ATP synthesis coupled proton transport), GO:0015992 (proton transport), GO:0046034 (ATP metabolic process), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Scf04196g01006.1	AT1G67080.1	***-	abscisic acid (aba)-deficient 4 LENGTH=220	IPR025461 (Protein of unknown function DUF4281)	
Niben101Scf04749g00006.1	ref|WP_015171905.1|	****	deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Geitlerinema sp. PCC 7407] ref|YP_007109391.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Geitlerinema sp. PCC 7407] gb|AFY66339.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Geitlerinema sp. PCC 7407]	IPR005101 (DNA photolyase, FAD-binding/Cryptochrome, C-terminal), IPR006050 (DNA photolyase, N-terminal)	GO:0003913 (DNA photolyase activity), GO:0006281 (DNA repair)
Niben101Scf05252g02010.1	gb|AAL87025.1|	****	cell wall protein Exp1 precursor [Mirabilis jalapa]	IPR002963 (Expansin)	GO:0009664 (plant-type cell wall organization)
Niben101Scf04407g01012.1	sp|Q9C519|WRKY6_ARATH	*-**	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01146g02016.1	sp|O48844|PSD1A_ARATH	***-	26S proteasome non-ATPase regulatory subunit 1 homolog A	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf07103g00011.1	sp|C9S8J9|RRP36_VERA1	***-	rRNA biogenesis protein RRP36	IPR009292 (Protein of unknown function DUF947)	
Niben101Scf01721g08009.1	AT4G31540.1	****	exocyst subunit exo70 family protein G1 LENGTH=687	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf02968g02015.1	ref|WP_019540988.1|	****	diphosphate--fructose-6-phosphate 1-phosphotransferase [Proteiniphilum acetatigenes]	IPR000023 (Phosphofructokinase domain), IPR011183 (Pyrophosphate-dependent phosphofructokinase PfpB), IPR022953 (Phosphofructokinase)	GO:0003872 (6-phosphofructokinase activity), GO:0005524 (ATP binding), GO:0006002 (fructose 6-phosphate metabolic process), GO:0006096 (glycolytic process), GO:0047334 (diphosphate-fructose-6-phosphate 1-phosphotransferase activity)
Niben101Scf01175g02013.1	AT1G28280.1	***-	VQ motif-containing protein LENGTH=247	IPR008889 (VQ)	
Niben101Ctg16331g00004.1			Unknown protein		
Niben101Scf06778g06005.1	sp|Q9C5C4|ARGE_ARATH	*-*-	Acetylornithine deacetylase		
Niben101Scf16511g00011.1	sp|Q94KB1|MLO14_ARATH	*-*-	MLO-like protein 14	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf02323g02001.1	sp|Q9Z959|SYM_CHLPN	--*-	Methionine--tRNA ligase		
Niben101Scf02318g03004.1	AT3G15180.2	*-*-	ARM repeat superfamily protein LENGTH=551	IPR016024 (Armadillo-type fold), IPR019538 (26S proteasome non-ATPase regulatory subunit 5)	GO:0005488 (binding), GO:0043248 (proteasome assembly)
Niben101Scf01230g02002.1	sp|Q43729|PER57_ARATH	****	Peroxidase 57	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03706g00007.1	sp|Q39644|LEA5_CITSI	***-	Late embryogenesis abundant protein Lea5	IPR004926 (Late embryogenesis abundant protein, LEA-5)	GO:0006950 (response to stress)
Niben101Scf13029g03026.1	AT3G56240.1	*-*-	copper chaperone LENGTH=121	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf03717g01008.1	gb|AET03420.2|	*-*-	nucleotide-diphospho-sugar transferase family protein [Medicago truncatula]	IPR003388 (Reticulon), IPR005069 (Nucleotide-diphospho-sugar transferase)	
Niben101Scf03160g01004.1	sp|Q9FMR3|NAC90_ARATH	***-	NAC domain-containing protein 90	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03671g03028.1	sp|O65041|UBA3_ARATH	*-**	NEDD8-activating enzyme E1 catalytic subunit	IPR016040 (NAD(P)-binding domain), IPR023318 (Ubiquitin activating enzyme, alpha domain)	GO:0005524 (ATP binding), GO:0006464 (cellular protein modification process), GO:0008641 (small protein activating enzyme activity), GO:0016881 (acid-amino acid ligase activity)
Niben101Scf11899g00017.1	sp|Q04833|LRP_CAEEL	--*-	Low-density lipoprotein receptor-related protein		
Niben101Scf07616g02023.1	sp|Q84QY3|PLP1_ORYSJ	*-*-	Patatin-like protein 1	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0008152 (metabolic process)
Niben101Scf04847g02012.1	sp|O45766|CWC15_CAEEL	***-	Protein CWC15 homolog	IPR006973 (Pre-mRNA-splicing factor  Cwf15/Cwc15)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf05449g03015.1	AT5G56840.1	***-	myb-like transcription factor family protein LENGTH=233	IPR001878 (Zinc finger, CCHC-type), IPR009057 (Homeodomain-like)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0008270 (zinc ion binding)
Niben101Scf06112g00003.1	gb|ADK97920.1|	***-	LuxR family transcriptional regulator [Schiedea globosa]		
Niben101Scf02353g04005.1	ref|XP_007037138.1|	***-	Ankyrin repeat domain-containing protein 50 isoform 3 [Theobroma cacao] gb|EOY21639.1| Ankyrin repeat domain-containing protein 50 isoform 3 [Theobroma cacao]		
Niben101Scf10900g02010.1	sp|Q7XJN6|PP197_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05349g00001.1	emb|CDX81787.1|	***-	BnaC08g38140D [Brassica napus]		
Niben101Scf04610g03002.1	sp|A1AVJ5|RS12_RUTMC	*-**	30S ribosomal protein S12	IPR000440 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3), IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0015935 (small ribosomal subunit), GO:0055114 (oxidation-reduction process)
Niben101Scf06465g04002.1			Unknown protein		
Niben101Scf04691g00002.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04232g00017.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf22015g02005.1	emb|CDX74355.1|	***-	BnaA03g26920D [Brassica napus]		
Niben101Scf01232g05001.1	sp|Q5UCC4|EMC10_HUMAN	-**-	ER membrane protein complex subunit 10		
Niben101Scf10940g03001.1	sp|Q769F9|TMEDA_DICDI	***-	Transmembrane emp24 domain-containing protein A	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf04934g01012.1	sp|Q6BV42|NPC2_DEBHA	--*-	Phosphatidylglycerol/phosphatidylinositol transfer protein	IPR014756 (Immunoglobulin E-set)	
Niben101Scf00770g02013.1	emb|CBR23797.1|	*-*-	Ycf1 protein [Olea europaea subsp. cuspidata]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf01411g01006.1	sp|Q96CT2|KLH29_HUMAN	*-*-	Kelch-like protein 29	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf00181g00004.1	sp|B0RDY9|IF2_CLAMS	*-*-	Translation initiation factor IF-2	IPR000795 (Elongation factor, GTP-binding domain), IPR005225 (Small GTP-binding protein domain), IPR009000 (Translation protein, beta-barrel domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf02798g01053.1	sp|Q16AE8|RL2_ROSDO	--*-	50S ribosomal protein L2	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf10440g00024.1			Unknown protein		
Niben101Scf03857g04002.1	AT3G62700.1	***-	multidrug resistance-associated protein 10 LENGTH=1539	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf11552g00015.1	sp|O23661|ARFC_ARATH	****	Auxin response factor 3	IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone)
Niben101Scf00355g01007.1	sp|Q5SP90|PP4R3_DANRE	*-*-	Serine/threonine-protein phosphatase 4 regulatory subunit 3	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02174g03010.1	sp|Q2M2U4|RNH2C_BOVIN	***-	Ribonuclease H2 subunit C	IPR013924 (Ribonuclease H2, subunit C)	
Niben101Scf12205g01017.1	sp|Q9C7N4|GDL15_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04036g05001.1	sp|Q9S7R3|LSH10_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	IPR006936 (ALOG domain)	
Niben101Scf00749g04008.1	sp|A2STX0|RS7_METLZ	****	30S ribosomal protein S7	IPR000235 (Ribosomal protein S5/S7), IPR023798 (Ribosomal protein S7 domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf02433g01001.1	sp|Q9FFI2|ATG5_ARATH	****	Autophagy protein 5	IPR007239 (Autophagy-related protein 5)	GO:0005737 (cytoplasm), GO:0006914 (autophagy)
Niben101Scf04289g01011.1	AT1G70280.2	***-	NHL domain-containing protein LENGTH=509	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0005515 (protein binding)
Niben101Scf04639g11011.1	sp|Q9NQZ2|SAS10_HUMAN	*-*-	Something about silencing protein 10	IPR007146 (Sas10/Utp3/C1D), IPR018972 (Sas10 C-terminal domain)	
Niben101Scf11837g00008.1	ref|XP_007042459.1|	***-	PIF / Ping-Pong family of plant transposases [Theobroma cacao] gb|EOX98290.1| PIF / Ping-Pong family of plant transposases [Theobroma cacao]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf03861g02041.1	sp|P61219|RPAB2_MOUSE	*-**	DNA-directed RNA polymerases I, II, and III subunit RPABC2	IPR006110 (RNA polymerase, subunit omega/K/RPB6)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf00669g00004.1	AT3G53530.2	***-	Chloroplast-targeted copper chaperone protein LENGTH=248		
Niben101Scf03116g04004.1	AT3G62200.1	*-*-	Putative endonuclease or glycosyl hydrolase LENGTH=673		
Niben101Scf00350g04018.1	gb|KGB94003.1|	***-	CBS domain protein [Burkholderia cepacia]	IPR000644 (CBS domain)	
Niben101Scf07255g00002.1	AT1G19400.1	***-	Erythronate-4-phosphate dehydrogenase family protein LENGTH=303		
Niben101Scf14649g00001.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07476g00010.1	AT1G34750.1	***-	Protein phosphatase 2C family protein LENGTH=282	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf02569g02010.1	emb|CDY30072.1|	***-	BnaC05g09480D [Brassica napus]		
Niben101Scf02237g09013.1	sp|Q9FXT6|PEX14_ARATH	*-**	Peroxisomal membrane protein PEX14	IPR006785 (Peroxisome membrane anchor protein Pex14p, N-terminal), IPR025655 (Peroxisomal membrane protein 14)	GO:0005515 (protein binding), GO:0005778 (peroxisomal membrane), GO:0016560 (protein import into peroxisome matrix, docking)
Niben101Scf09028g00001.1	sp|A6H759|LRC72_BOVIN	*-*-	Leucine-rich repeat-containing protein 72	IPR001611 (Leucine-rich repeat), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf02475g09005.1	sp|Q4G055|RBM40_RAT	*-**	RNA-binding protein 40	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf15604g00017.1	ref|WP_019257793.1|	*-**	DNA-3-methyladenine glycosylase [Bacillus subtilis]	IPR011257 (DNA glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair)
Niben101Scf04899g03004.1	AT2G16920.1	*-*-	ubiquitin-conjugating enzyme 23 LENGTH=1102	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf02051g00001.1	AT3G22790.1	***-	Kinase interacting (KIP1-like) family protein LENGTH=1728	IPR011684 (KIP1-like)	
Niben101Scf03971g02005.1	sp|Q10Q07|NNJA1_ORYSJ	***-	Ninja-family protein	IPR012463 (Ninja)	
Niben101Scf10188g02006.1	ref|XP_003621006.1|	*-*-	U-box domain-containing protein [Medicago truncatula] gb|ABN09772.1| U box [Medicago truncatula] gb|AES77224.1| ubox-like protein, putative [Medicago truncatula]		
Niben101Scf00893g01026.1	sp|Q75BM4|SFH5_ASHGO	*-*-	Phosphatidylinositol transfer protein SFH5	IPR001071 (Cellular retinaldehyde binding/alpha-tocopherol transport), IPR011074 (CRAL/TRIO, N-terminal domain)	GO:0005215 (transporter activity), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf05674g04003.1	sp|Q8LGM7|MOCOS_SOLLC	*-*-	Molybdenum cofactor sulfurase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf09015g01002.1	emb|CDY35740.1|	*-*-	BnaC03g58610D [Brassica napus]		
Niben101Ctg15209g00004.1	sp|O95208|EPN2_HUMAN	*-*-	Epsin-2	IPR008942 (ENTH/VHS)	
Niben101Scf02852g02015.1	sp|F4IGA5|NU133_ARATH	***-	Nuclear pore complex protein NUP133	IPR007187 (Nucleoporin, Nup133/Nup155-like, C-terminal), IPR014908 (Nucleoporin, Nup133/Nup155-like, N-terminal), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01634g05011.1	sp|P0A1B0|EX3_SALTI	***-	Exodeoxyribonuclease III	IPR004808 (AP endonuclease 1), IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0003677 (DNA binding), GO:0004518 (nuclease activity), GO:0004519 (endonuclease activity), GO:0005622 (intracellular), GO:0006281 (DNA repair)
Niben101Scf13776g01008.1	ref|WP_008313378.1|	***-	Protein of unknown function (DUF3326) [Leptolyngbya sp. PCC 6406]	IPR021763 (Protein of unknown function DUF3326)	
Niben101Scf05262g00018.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf05095g01019.1	sp|A1CHL3|PRP28_ASPCL	*-*-	Pre-mRNA-splicing ATP-dependent RNA helicase prp28		
Niben101Scf34538g00005.1	sp|Q67YC0|PPSP1_ARATH	***-	Inorganic pyrophosphatase 1	IPR006383 (HAD-superfamily hydrolase, subfamily IB, PSPase-like), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016791 (phosphatase activity)
Niben101Scf01423g05004.1	emb|CAA78393.1|	--*-	pistil extensin like protein [Nicotiana tabacum]		
Niben101Scf00821g13003.1	sp|Q86IZ4|IPP2_DICDI	--**	Protein phosphatase inhibitor 2	IPR007062 (Protein phosphatase inhibitor 2 (IPP-2))	GO:0004864 (protein phosphatase inhibitor activity), GO:0009966 (regulation of signal transduction), GO:0043666 (regulation of phosphoprotein phosphatase activity)
Niben101Scf01339g02018.1	sp|Q55DL2|MET18_DICDI	*-*-	Histidine protein methyltransferase 1 homolog	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf02837g01018.1	ref|XP_003618031.1|	*-**	Retinoblastoma-binding protein [Medicago truncatula] gb|AET00990.1| DWNN domain, A CCHC-type zinc finger protein [Medicago truncatula]	IPR001878 (Zinc finger, CCHC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014891 (DWNN domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf05229g03006.1	sp|Q9JM62|REEP6_MOUSE	*-*-	Receptor expression-enhancing protein 6	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf26273g00001.1			Unknown protein		
Niben101Scf02826g00020.1	sp|Q10SC8|CIPK9_ORYSJ	*-**	CBL-interacting protein kinase 9	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04632g09013.1	gb|KEH25572.1|	***-	HSP20-like chaperone superfamily protein [Medicago truncatula]	IPR008978 (HSP20-like chaperone)	
Niben101Scf02430g08002.1	ref|XP_003623505.1|	***-	Wound-induced protein [Medicago truncatula] gb|AES79723.1| wound-induced-like protein [Medicago truncatula]	IPR009798 (Wound-induced protein, Wun1)	
Niben101Scf00482g10005.1	ref|XP_003597166.1|	***-	Vicilin-like antimicrobial peptides 2-3 [Medicago truncatula]	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf01163g00002.1	AT1G29000.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=287	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf12289g01005.1	sp|Q6PA14|STK4_XENLA	****	Serine/threonine-protein kinase 4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07440g02026.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01626g04019.1	sp|Q8RWV3|CCL11_ARATH	****	Cyclin-L1-1	IPR015429 (Cyclin C/H/T/L)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0006396 (RNA processing), GO:0019901 (protein kinase binding)
Niben101Scf01959g07005.1	sp|Q9FI00|MLO11_ARATH	***-	MLO-like protein 11	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf00612g01002.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf00448g07005.1	sp|Q6IP06|STK3_XENLA	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00219g07015.1	sp|O49929|OEP24_PEA	***-	Outer envelope pore protein 24, chloroplastic		
Niben101Scf05767g06011.1	sp|A8FK87|PANB_CAMJ8	****	3-methyl-2-oxobutanoate hydroxymethyltransferase	IPR003700 (Ketopantoate hydroxymethyltransferase)	GO:0003824 (catalytic activity), GO:0003864 (3-methyl-2-oxobutanoate hydroxymethyltransferase activity), GO:0015940 (pantothenate biosynthetic process)
Niben101Scf05618g02013.1	gb|EWM23592.1|	*-*-	Protein of unknown function DUF2039 [Nannochloropsis gaditana]	IPR019351 (Protein of unknown function DUF2039)	
Niben101Scf10305g01003.1	sp|Q118B4|ACSF_TRIEI	****	Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase	IPR003251 (Rubrerythrin), IPR008434 (Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase)	GO:0015979 (photosynthesis), GO:0015995 (chlorophyll biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0046872 (metal ion binding), GO:0048529 (magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05252g02011.1	AT3G10915.5	***-	Reticulon family protein LENGTH=249	IPR003388 (Reticulon)	
Niben101Scf03645g04011.1	sp|Q9FLS0|FB253_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf05795g02003.1	AT2G44830.1	*-*-	Protein kinase superfamily protein LENGTH=765		
Niben101Scf08820g00010.1	sp|P45857|ACDB_BACSU	--*-	Acyl-CoA dehydrogenase	IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain), IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal)	GO:0008152 (metabolic process), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03268g01008.1	sp|Q4VYC8|NSP1_MEDTR	***-	Nodulation-signaling pathway 1 protein	IPR005202 (Transcription factor GRAS), IPR030015 (Scarecrow-like protein 29/nodulation signalling pathway 1)	
Niben101Scf00069g02007.1	gb|KEH25572.1|	*-*-	HSP20-like chaperone superfamily protein [Medicago truncatula]	IPR008978 (HSP20-like chaperone)	
Niben101Scf02996g06001.1	sp|B8FGT6|ATPA_DESAA	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf00482g07009.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02227g02008.1	sp|B3E851|KAD_GEOLS	****	Adenylate kinase	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004017 (adenylate kinase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0016776 (phosphotransferase activity, phosphate group as acceptor), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf01182g04009.1	sp|Q5E9E4|SSRB_BOVIN	*-*-	Translocon-associated protein subunit beta	IPR008856 (Translocon-associated protein subunit beta)	GO:0005783 (endoplasmic reticulum), GO:0016021 (integral component of membrane)
Niben101Scf07155g03018.1	sp|Q6ICX4|PTBP3_ARATH	*-**	Polypyrimidine tract-binding protein homolog 3	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf05175g03008.1	sp|Q6NQK2|NAC8_ARATH	***-	NAC domain-containing protein 8	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08984g00007.1	ref|WP_025931228.1|	*-*-	MULTISPECIES: hypothetical protein [Prochlorococcus]	IPR003425 (Uncharacterised protein family Ycf19)	GO:0016020 (membrane)
Niben101Scf07664g01011.1	sp|Q9SFU0|SC24A_ARATH	*-**	Protein transport protein Sec24-like	IPR006900 (Sec23/Sec24, helical domain), IPR012990 (Sec23/Sec24 beta-sandwich), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0006886 (intracellular protein transport), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0030127 (COPII vesicle coat)
Niben101Scf03907g02015.1	sp|Q8H038|KATAM_ORYSJ	***-	Xyloglucan galactosyltransferase KATAMARI1 homolog	IPR004263 (Exostosin-like)	
Niben101Scf13962g01013.1	sp|Q69Q47|CIPKO_ORYSJ	****	CBL-interacting protein kinase 24	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf26539g00001.1	sp|Q37547|COX2_MALTY	*-**	Cytochrome c oxidase subunit 2	IPR008972 (Cupredoxin)	GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0016020 (membrane)
Niben101Scf05535g00006.1	AT2G36430.1	*-*-	Plant protein of unknown function (DUF247) LENGTH=448	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf01554g00001.1	sp|A4GYV2|RK2_POPTR	****	50S ribosomal protein L2, chloroplastic	IPR002171 (Ribosomal protein L2)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit), GO:0016740 (transferase activity)
Niben101Scf02069g02022.1	emb|CDX71721.1|	*-*-	BnaC08g31530D [Brassica napus]		
Niben101Scf04077g06001.1			Unknown protein		
Niben101Scf11689g00009.1	sp|B7JXM2|GUAA_CYAP8	****	GMP synthase [glutamine-hydrolyzing]	IPR001674 (GMP synthase, C-terminal), IPR022955 (GMP synthase), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003922 (GMP synthase (glutamine-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0006164 (purine nucleotide biosynthetic process), GO:0006177 (GMP biosynthetic process), GO:0016462 (pyrophosphatase activity)
Niben101Scf07288g06011.1	emb|CDY62880.1|	***-	BnaC08g47400D [Brassica napus]	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf06896g02005.1	sp|Q9FXA3|BH095_ARATH	***-	Transcription factor bHLH95	IPR002912 (ACT domain), IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0046983 (protein dimerization activity)
Niben101Scf00369g04003.1	sp|Q945T0|RALF_TOBAC	***-	Rapid alkalinization factor	IPR008801 (Rapid ALkalinization Factor)	
Niben101Ctg14473g00004.1	AT5G52390.1	***-	PAR1 protein LENGTH=195	IPR009489 (PAR1)	
Niben101Scf04225g02006.1	sp|Q9C7S7|ERO1_ARATH	****	Endoplasmic reticulum oxidoreductin-1	IPR007266 (Endoplasmic reticulum oxidoreductin 1)	GO:0003756 (protein disulfide isomerase activity), GO:0005783 (endoplasmic reticulum), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf07767g02022.1	AT1G63980.1	*-*-	D111/G-patch domain-containing protein LENGTH=391		
Niben101Scf08192g01002.1	gb|KFB84280.1|	***-	alpha/beta hydrolase [Calothrix sp. 336/3]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03203g01001.1	sp|E9QAU8|RN165_MOUSE	*-*-	RING finger protein 165	IPR010543 (Domain of unknown function DUF1117), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04730g01023.1	sp|Q9NYP3|DONS_HUMAN	*-*-	Protein downstream neighbor of Son	IPR024861 (Donson)	
Niben101Scf00033g07007.1	ref|NP_001045237.1|	*-*-	product [Oryza sativa Japonica Group]	IPR021775 (Protein of unknown function DUF3339)	
Niben101Scf08516g03011.1	gb|AES73591.2|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf04205g04008.1	AT1G50575.1	***-	Putative lysine decarboxylase family protein LENGTH=306	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf01350g04021.1	gb|AID60082.1|	*-*-	zinc finger protein 3A [Brassica napus]		
Niben101Scf01266g01003.1	sp|Q1CTM7|SYE2_HELPH	--*-	Glutamate--tRNA ligase 2		
Niben101Scf03114g00012.1	sp|Q9STE1|PP333_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf08523g00013.1	AT3G27190.1	****	uridine kinase-like 2 LENGTH=483	IPR000764 (Uridine kinase like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029057 (Phosphoribosyltransferase-like)	GO:0004849 (uridine kinase activity), GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0044206 (UMP salvage)
Niben101Scf00332g07017.1	AT2G24100.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=466		
Niben101Ctg13249g00004.1			Unknown protein		
Niben101Scf01295g03001.1	emb|CDX92601.1|	*-*-	BnaA10g16400D [Brassica napus]		
Niben101Scf07751g01021.1	sp|P70371|TERF1_MOUSE	--**	Telomeric repeat-binding factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01205g01001.1			Unknown protein		
Niben101Scf08869g01009.1			Unknown protein		
Niben101Scf11653g00007.1	AT2G46560.1	***-	transducin family protein / WD-40 repeat family protein LENGTH=2513	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR022033 (RAVE complex protein Rav1 C-terminal)	GO:0005515 (protein binding)
Niben101Scf06996g02042.1	AT4G25800.1	***-	Calmodulin-binding protein LENGTH=601	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf03436g01005.1	gb|KEH31712.1|	****	calmodulin-binding protein [Medicago truncatula]	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf08041g01021.1	ref|XP_007042708.1|	*-*-	NAD(P)-binding R isoform 1 [Theobroma cacao]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf08273g00010.1	sp|Q9SD34|C3H44_ARATH	*-**	Zinc finger CCCH domain-containing protein 44	IPR003169 (GYF), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07680g04002.1	sp|Q9M088|E135_ARATH	***-	Glucan endo-1,3-beta-glucosidase 5	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04594g02014.1	AT1G25420.1	***-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=323	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf04980g00024.1	sp|P51409|RM05_SOLTU	--*-	60S ribosomal protein L5, mitochondrial		
Niben101Scf01927g01009.1	AT3G21600.1	*-*-	Senescence/dehydration-associated protein-related LENGTH=374		
Niben101Scf09801g01006.1	sp|P41098|RL34_TOBAC	*-*-	60S ribosomal protein L34	IPR008195 (Ribosomal protein L34Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf11122g01018.1	sp|Q60AU6|ERPA2_METCA	****	Iron-sulfur cluster insertion protein ErpA 2	IPR000361 (FeS cluster biogenesis), IPR016092 (FeS cluster insertion protein)	GO:0005198 (structural molecule activity), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf01689g06004.1	sp|Q9YB48|RS9_AERPE	***-	30S ribosomal protein S9	IPR000754 (Ribosomal protein S9), IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02638g01019.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09100g02008.1	sp|Q59WH0|ADA2_CANAL	***-	Transcriptional adapter 2	IPR009057 (Homeodomain-like), IPR016827 (Transcriptional adaptor 2)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00416g01009.1	sp|A7QEU4|PER5_VITVI	****	Peroxidase 5	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02807g11011.1	ref|XP_007049039.1|	*-*-	FAR1-related sequence 2, putative isoform 5 [Theobroma cacao] gb|EOX93196.1| FAR1-related sequence 2, putative isoform 5 [Theobroma cacao]		
Niben101Scf00953g04018.1	sp|Q7XUN2|MAD17_ORYSJ	*-*-	MADS-box transcription factor 17	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf17487g00006.1	gb|KEH43026.1|	***-	MtN26 [Medicago truncatula]		
Niben101Scf02929g06031.1	gb|AFO69204.1|	****	ATPase subunit 8 (mitochondrion) [Gossypium hirsutum]	IPR003319 (ATP synthase YMF19-like, N-terminal), IPR009455 (ATP synthase YMF19, uncharacterised, C-terminal)	GO:0005739 (mitochondrion), GO:0016021 (integral component of membrane), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances)
Niben101Scf02499g03005.1	sp|Q5FVJ6|BSCL2_RAT	*-*-	Seipin	IPR009617 (Adipose-regulatory protein, Seipin)	
Niben101Scf07728g02025.1	sp|P08548|LIN1_NYCCO	--*-	LINE-1 reverse transcriptase homolog		
Niben101Scf00503g03006.1	sp|P23467|PTPRB_HUMAN	--*-	Receptor-type tyrosine-protein phosphatase beta		
Niben101Scf05133g05006.1	AT4G03420.1	***-	Protein of unknown function (DUF789) LENGTH=310	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf03652g00001.1	AT3G23090.1	***-	TPX2 (targeting protein for Xklp2) protein family LENGTH=338		
Niben101Scf03949g03005.1	sp|Q56XQ6|PTR15_ARATH	***-	Protein NRT1/ PTR FAMILY 4.4	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02243g06016.1			Unknown protein		
Niben101Scf03705g03009.1	AT2G35010.1	*-*-	thioredoxin O1 LENGTH=194	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00988g04021.1	sp|D3ZD32|CHD5_RAT	*-**	Chromodomain-helicase-DNA-binding protein 5	IPR000330 (SNF2-related), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016197 (Chromo domain-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding)
Niben101Scf09192g03010.1	gb|KEH40409.1|	***-	leguminosin group486 secreted peptide [Medicago truncatula]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf00321g00010.1	sp|Q8GUP1|CTF77_ARATH	***-	Cleavage stimulation factor subunit 77	IPR008847 (Suppressor of forked), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006396 (RNA processing), GO:0006397 (mRNA processing)
Niben101Scf02794g04001.1			Unknown protein		
Niben101Scf00868g07004.1	sp|Q64092|TFE3_MOUSE	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf07687g02007.1	sp|O81481|IF4E1_MAIZE	****	Eukaryotic translation initiation factor 4E-1	IPR001040 (Translation Initiation factor eIF- 4e), IPR023398 (Translation Initiation factor eIF- 4e-like  domain)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0006413 (translational initiation)
Niben101Scf02864g11040.1	ref|NP_001117455.1|	*-**	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gb|AEE32376.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana]	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00603g00010.1	sp|A4SZX3|MOAC_POLSQ	***-	Cyclic pyranopterin monophosphate synthase accessory protein	IPR002820 (Molybdopterin cofactor biosynthesis C (MoaC) domain), IPR023045 (Molybdenum cofactor biosynthesis C)	GO:0006777 (Mo-molybdopterin cofactor biosynthetic process)
Niben101Scf02821g10004.1	AT4G17940.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=274	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08651g00014.1	AT1G71080.1	*-**	RNA polymerase II transcription elongation factor LENGTH=326	IPR019194 (Transcription elognation factor  Eaf, N-terminal), IPR027093 (EAF family)	GO:0006355 (regulation of transcription, DNA-templated), GO:0032783 (ELL-EAF complex)
Niben101Scf20560g00001.1			Unknown protein		
Niben101Scf10363g00001.1	gb|AID21636.1|	***-	At4g21420p-like protein [Arabidopsis lyrata]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf02538g01002.1	sp|P86809|NLTP2_APIGA	***-	Non-specific lipid-transfer protein 2	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf34389g00003.1	gb|AIA58500.1|	*-*-	elongation factor Tu, partial [Arcanobacterium phocisimile]		
Niben101Scf00240g01001.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06825g03009.1	sp|A6NA00|RSSA_ORNPR	****	40S ribosomal protein SA	IPR001865 (Ribosomal protein S2), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf00238g09004.1	AT4G03270.1	***-	Cyclin D6;1 LENGTH=302	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf03488g06007.1	sp|Q8VDI7|UBAC1_MOUSE	--*-	Ubiquitin-associated domain-containing protein 1	IPR006567 (PUG domain), IPR007087 (Zinc finger, C2H2), IPR009060 (UBA-like), IPR018997 (PUB domain)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf07152g01002.1	sp|O04375|2A5A_ARATH	****	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf33912g00006.1	AT2G41810.1	***-	Protein of unknown function, DUF642 LENGTH=370	IPR006946 (Protein of unknown function DUF642), IPR008979 (Galactose-binding domain-like)	
Niben101Scf00769g00017.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf01819g00001.1	gb|KEH19013.1|	*-*-	dishevelled/Egl-10/leckstrin domain protein [Medicago truncatula]	IPR006869 (Domain of unknown function DUF547)	
Niben101Scf00508g09001.1	gb|KEH40211.1|	***-	ATRAD3-like protein [Medicago truncatula]	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf00338g10009.1	sp|Q9FN08|BGA10_ARATH	*-*-	Beta-galactosidase 10	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00249g00008.1	gb|KEH18714.1|	*-*-	rRNA processing/ribosome biogenesis protein [Medicago truncatula]		
Niben101Scf02586g00006.1	AT2G25180.1	*-*-	response regulator 12 LENGTH=596	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily), IPR017053 (Response regulator, plant B-type)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05203g05002.1	ref|WP_019106943.1|	--*-	ATP-dependent Clp protease ATP-binding protein [Peptoniphilus senegalensis]		
Niben101Scf00377g02007.1	ref|XP_002518811.1|	****	nucleic acid binding protein, putative [Ricinus communis] gb|EEF43736.1| nucleic acid binding protein, putative [Ricinus communis]	IPR001878 (Zinc finger, CCHC-type), IPR012923 (Replication fork protection component Swi3)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus), GO:0006974 (cellular response to DNA damage stimulus), GO:0007049 (cell cycle), GO:0008270 (zinc ion binding), GO:0048478 (replication fork protection)
Niben101Scf03253g00002.1	AT5G19440.1	****	NAD(P)-binding Rossmann-fold superfamily protein LENGTH=326	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf00941g00014.1			Unknown protein		
Niben101Scf04024g00009.1	AT4G38970.1	****	fructose-bisphosphate aldolase 2 LENGTH=398	IPR000741 (Fructose-bisphosphate aldolase, class-I), IPR013785 (Aldolase-type TIM barrel), IPR029768 (Fructose-bisphosphate aldolase class-I active site)	GO:0003824 (catalytic activity), GO:0004332 (fructose-bisphosphate aldolase activity), GO:0006096 (glycolytic process)
Niben101Scf08032g00005.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09038g01001.1	sp|Q8GWU0|PGP2_ARATH	***-	Phosphoglycolate phosphatase 2	IPR023215 (Nitrophenylphosphatase-like  domain)	
Niben101Scf04567g01003.1	sp|Q1JPL7|PME18_ARATH	****	Pectinesterase/pectinesterase inhibitor 18	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02078g02004.1	sp|Q9FK54|FB260_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf24210g00003.1	sp|P43507|CPR3_CAEEL	--**	Cathepsin B-like cysteine proteinase 3	IPR000118 (Granulin), IPR013128 (Peptidase C1A), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf03801g00003.1	sp|Q31KX4|PROA_SYNE7	****	Gamma-glutamyl phosphate reductase	IPR001057 (Glutamate/acetylglutamate kinase), IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0003824 (catalytic activity), GO:0004349 (glutamate 5-kinase activity), GO:0004350 (glutamate-5-semialdehyde dehydrogenase activity), GO:0005737 (cytoplasm), GO:0006561 (proline biosynthetic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf07247g00001.1	AT3G15350.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=424	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf00350g03015.1	sp|E1U332|ALL12_OLEEU	*-*-	Isoflavone reductase-like protein	IPR008030 (NmrA-like domain)	
Niben101Scf09782g00003.1	sp|Q84KJ6|AMT31_ORYSJ	****	Ammonium transporter 3 member 1	IPR001905 (Ammonium transporter), IPR002229 (Blood group Rhesus C/E/D polypeptide), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf05152g00001.1	sp|Q9Y2H1|ST38L_HUMAN	****	Serine/threonine-protein kinase 38-like	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00152g18006.1	AT1G19880.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=538	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR028641 (Protein RCC2)	GO:0000278 (mitotic cell cycle), GO:0007032 (endosome organization), GO:0051301 (cell division)
Niben101Scf03555g03008.1	sp|Q9LUA9|COL10_ARATH	****	Zinc finger protein CONSTANS-LIKE 10	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf07709g01013.1	sp|Q9XIA9|LACS2_ARATH	*-*-	Long chain acyl-CoA synthetase 2	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf02466g01026.1	sp|Q9XGX8|TIM9_MESCR	***-	Mitochondrial import inner membrane translocase subunit Tim9	IPR004217 (Tim10/DDP family zinc finger)	
Niben101Scf00142g01010.1			Unknown protein		
Niben101Scf00246g00006.1	AT4G15802.1	***-	heat shock factor binding protein LENGTH=86	IPR009643 (Heat shock factor binding 1)	
Niben101Scf06868g00003.1	sp|Q9FNL7|PTR3_ARATH	***-	Protein NRT1/ PTR FAMILY 5.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00160g06027.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04902g00012.1	sp|Q6Z2G9|TLP5_ORYSJ	***-	Tubby-like F-box protein 5	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf08963g02001.1	sp|Q9BUJ2|HNRL1_HUMAN	*-*-	Heterogeneous nuclear ribonucleoprotein U-like protein 1	IPR003877 (SPRY domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf00339g16007.1	sp|Q7WKG2|AQPZ_BORBR	***-	Aquaporin Z	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03564g00018.1	sp|Q9LEZ3|BIM1_ARATH	***-	Transcription factor BIM1	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05993g00013.1	sp|P15398|RPA1_SCHPO	*-**	DNA-directed RNA polymerase I subunit rpa1	IPR015699 (DNA-directed RNA pol I, largest subunit)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf00744g08014.1	AT3G45580.1	*-**	RING/U-box protein with C6HC-type zinc finger LENGTH=408	IPR001841 (Zinc finger, RING-type), IPR002867 (Zinc finger, C6HC-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08137g05017.1	AT3G17730.1	***-	NAC domain containing protein 57 LENGTH=246	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10747g00012.1	sp|Q7U4J2|RL29_SYNPX	--*-	50S ribosomal protein L29	IPR001854 (Ribosomal protein L29)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07366g01014.1	gb|ABI34321.1|	*-*-	RNase H family protein [Solanum demissum]		
Niben101Scf33361g00002.1			Unknown protein		
Niben101Scf01687g08001.1	sp|Q01593|ABI3_ARATH	***-	B3 domain-containing transcription factor ABI3	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf00381g05002.1	sp|Q08DI6|RNF11_BOVIN	*-*-	RING finger protein 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03407g02001.1	ref|WP_007576567.1|	-**-	branched-chain amino acid ABC transporter ATP-binding protein [Patulibacter medicamentivorans] gb|EHN10219.1| branched-chain amino acid ABC transporter ATP-binding protein putative [Patulibacter medicamentivorans]		
Niben101Scf04387g01033.1	sp|Q67ZB3|FRL3_ARATH	***-	FRIGIDA-like protein 3	IPR012474 (Frigida-like)	
Niben101Scf02245g02010.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf02483g04003.1	sp|Q9C554|EXPA1_ARATH	***-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf03154g03009.1	AT4G34980.1	****	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf08159g00005.1			Unknown protein		
Niben101Scf06955g04042.1	ref|XP_002536345.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF26037.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf20283g01006.1	AT1G80160.1	***-	Lactoylglutathione lyase / glyoxalase I family protein LENGTH=167	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf02517g17005.1	ref|XP_003616405.1|	--*-	Ribosomal RNA large subunit methyltransferase N [Medicago truncatula]		
Niben101Scf03768g02006.1	AT5G24600.1	***-	Protein of unknown function, DUF599 LENGTH=248	IPR006747 (Protein of unknown function DUF599)	
Niben101Scf05251g00010.1	AT1G48590.2	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=200	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf26138g00002.1	sp|Q3C1Q5|CCSA_NICSY	--*-	Cytochrome c biogenesis protein CcsA		
Niben101Scf07423g03002.1	AT1G29500.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Ctg09960g00002.1	sp|Q6AWW5|Y5262_ARATH	*-*-	Ankyrin repeat-containing protein	IPR000535 (MSP domain), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf02658g03021.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf16516g00010.1	sp|Q6NMR8|FAF3_ARATH	*-*-	Protein FANTASTIC FOUR 3	IPR021410 (The fantastic four family)	
Niben101Scf04528g09004.1	AT2G28260.1	***-	cyclic nucleotide-gated channel 15 LENGTH=678	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf06423g01016.1	sp|O42993|FKBP_SCHPO	***-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf00922g02006.1	sp|Q92576|PHF3_HUMAN	--*-	PHD finger protein 3	IPR001025 (Bromo adjacent homology (BAH) domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03034g00013.1			Unknown protein		
Niben101Scf09345g00002.1	sp|O04887|PME2_CITSI	****	Pectinesterase 2	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf05135g05004.1	sp|Q94C77|RPKL_ARATH	*-**	Receptor protein kinase-like protein	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03510g03001.1	AT5G65110.1	****	acyl-CoA oxidase 2 LENGTH=692	IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR012258 (Acyl-CoA oxidase), IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal)	GO:0003995 (acyl-CoA dehydrogenase activity), GO:0003997 (acyl-CoA oxidase activity), GO:0005777 (peroxisome), GO:0006631 (fatty acid metabolic process), GO:0006635 (fatty acid beta-oxidation), GO:0008152 (metabolic process), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03039g02002.1	sp|Q9C5V5|GLR28_ARATH	****	Glutamate receptor 2.8	IPR001320 (Ionotropic glutamate receptor), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf00294g00004.1	AT5G60680.1	***-	Protein of unknown function, DUF584 LENGTH=163	IPR007608 (Senescence regulator S40)	
Niben101Scf01353g02009.1	sp|Q9LZQ1|TBL6_ARATH	***-	Protein trichome birefringence-like 6	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf02634g00006.1	sp|Q6DJH2|ADPPT_XENLA	*-*-	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	IPR008278 (4'-phosphopantetheinyl transferase superfamily)	GO:0000287 (magnesium ion binding), GO:0008897 (holo-[acyl-carrier-protein] synthase activity), GO:0009059 (macromolecule biosynthetic process)
Niben101Scf06822g04003.1	AT5G46770.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=133		
Niben101Scf10322g01028.1	AT1G26760.1	***-	SET domain protein 35 LENGTH=545	IPR001214 (SET domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00646g06007.1	emb|CDY47860.1|	***-	BnaCnng15560D [Brassica napus]	IPR008511 (Protein BYPASS-related)	
Niben101Scf04044g13003.1			Unknown protein		
Niben101Scf02864g03015.1	sp|Q9SD40|SRS1_ARATH	***-	Protein SHI RELATED SEQUENCE 1	IPR007818 (Protein of unknown function DUF702)	
Niben101Scf00867g00001.1	AT5G07030.1	***-	Eukaryotic aspartyl protease family protein LENGTH=455	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf07678g07011.1	sp|O04379|AGO1_ARATH	*-*-	Protein argonaute 1	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf11214g00007.1	sp|P36222|CH3L1_HUMAN	****	Chitinase-3-like protein 1	IPR017853 (Glycoside hydrolase superfamily), IPR029070 (Chitinase insertion domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004568 (chitinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process)
Niben101Scf06926g06001.1	sp|Q9ZT48|ATE1_ARATH	****	Arginyl-tRNA--protein transferase 1	IPR016181 (Acyl-CoA N-acyltransferase), IPR017137 (Arginine-tRNA-protein transferase 1, eukaryotic)	GO:0004057 (arginyltransferase activity), GO:0016598 (protein arginylation)
Niben101Scf04653g01009.1			Unknown protein		
Niben101Scf02407g01001.1	sp|P01122|RHO_APLCA	****	Ras-like GTP-binding protein RHO	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf05132g01006.1	ref|NP_063996.1|	-**-	orf116 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] ref|YP_004222377.1| hypothetical protein BevumaM_p144 [Beta vulgaris subsp. maritima] ref|YP_004842183.1| hypothetical protein BemaM_p139 [Beta macrocarpa] dbj|BAA99308.1| orf116 [Beta vulgaris subsp. vulgaris] emb|CBJ14016.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBJ14044.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBJ17592.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBJ20710.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBX24988.1| hypothetical protein [Beta macrocarpa] emb|CBL54129.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp. maritima]		
Niben101Scf03842g01013.1	sp|Q2TA10|UB2D1_BOVIN	***-	Ubiquitin-conjugating enzyme E2 D1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf01983g16030.1	sp|Q9SYL6|GGH1_ARATH	****	Gamma-glutamyl hydrolase 1	IPR011697 (Peptidase C26), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003824 (catalytic activity), GO:0006541 (glutamine metabolic process), GO:0008242 (omega peptidase activity), GO:0016787 (hydrolase activity)
Niben101Scf02790g01009.1	sp|Q7RV88|IF4A_NEUCR	*-**	ATP-dependent RNA helicase eIF4A	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf15657g02002.1	AT3G07470.1	***-	Protein of unknown function, DUF538 LENGTH=169	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf17695g00003.1	sp|Q9HK21|SMC_THEAC	--*-	Chromosome partition protein Smc		
Niben101Scf01284g02010.1	sp|Q5IH14|SPP1_TOBAC	****	Sucrose-phosphatase 1	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR013679 (Sucrose-6-phosphate phosphohydrolase C-terminal), IPR023214 (HAD-like domain)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0005986 (sucrose biosynthetic process), GO:0008152 (metabolic process), GO:0016791 (phosphatase activity), GO:0050307 (sucrose-phosphate phosphatase activity)
Niben101Scf03085g01001.1	sp|Q5A4W8|BDF1_CANAL	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf02452g01007.1	AT1G77280.1	*-*-	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain LENGTH=794	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	
Niben101Scf08855g02009.1	AT1G14720.1	****	xyloglucan endotransglucosylase/hydrolase 28 LENGTH=332	IPR010713 (Xyloglucan endo-transglycosylase, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf02060g00011.1	sp|P49026|GBLP_TOBAC	--**	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR016024 (Armadillo-type fold), IPR020472 (G-protein beta WD-40 repeat)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00878g02006.1	AT2G44990.1	***-	carotenoid cleavage dioxygenase 7 LENGTH=629	IPR004294 (Carotenoid oxygenase)	
Niben101Scf18667g02004.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg12891g00001.1	sp|Q05001|NCPR_CATRO	*-**	NADPH--cytochrome P450 reductase	IPR001094 (Flavodoxin), IPR029039 (Flavoprotein-like)	GO:0005506 (iron ion binding), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04077g03004.1	sp|B2IFY8|RL19_BEII9	*-*-	50S ribosomal protein L19	IPR001857 (Ribosomal protein L19), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02044g02001.1			Unknown protein		
Niben101Scf00120g00001.1	sp|Q923D4|SF3B5_MOUSE	--*-	Splicing factor 3B subunit 5	IPR009846 (Splicing factor 3B subunit 5/RDS3 complex subunit 10)	
Niben101Ctg16366g00004.1	sp|Q6P9U1|NUD22_RAT	***-	Nucleoside diphosphate-linked moiety X motif 22	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf00863g00009.1	emb|CDY23208.1|	*-*-	BnaA04g05510D [Brassica napus]		
Niben101Scf12197g02001.1	ref|NP_172639.2|	*-*-	ankyrin repeat family protein [Arabidopsis thaliana] gb|AEE28777.1| ankyrin repeat family protein [Arabidopsis thaliana]		
Niben101Scf00343g04001.1	ref|XP_002531760.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF30616.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02829g09009.1	sp|Q9FUR2|IP5P2_ARATH	*-**	Type I inositol 1,4,5-trisphosphate 5-phosphatase 2	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf12662g00012.1	AT3G22200.2	*-**	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein LENGTH=513	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf05391g02010.1			Unknown protein		
Niben101Ctg13065g00003.1	sp|Q9LUG9|MD33A_ARATH	*-*-	Mediator of RNA polymerase II transcription subunit 33A		
Niben101Scf02634g00005.1	sp|Q1QDM9|GLND_PSYCK	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf00595g08033.1	AT3G57270.1	***-	beta-1,3-glucanase 1 LENGTH=340	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00341g09018.1	sp|Q94EG9|ZIP11_ARATH	****	Zinc transporter 11	IPR003689 (Zinc/iron permease)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf07188g02012.1	sp|Q9ZPR0|COQ4_ARATH	****	Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial	IPR007715 (Ubiquinone biosynthesis protein Coq4)	GO:0006744 (ubiquinone biosynthetic process)
Niben101Scf01438g04009.1	sp|Q9ZQ19|RFA2A_ARATH	****	Replication protein A 32 kDa subunit A	IPR014646 (Replication factor A protein 2)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0006310 (DNA recombination)
Niben101Scf02634g01001.1	sp|P00243|FER_SYNY4	***-	Ferredoxin	IPR010241 (Ferredoxin [2Fe-2S], plant), IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0022900 (electron transport chain), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf01596g02004.1	ref|WP_002615892.1|	--*-	virulence factor MviN [Stigmatella aurantiaca] ref|YP_003953688.1| hypothetical protein STAUR_4075 [Stigmatella aurantiaca DW4/3-1] gb|EAU64937.1| integral membrane protein MviN [Stigmatella aurantiaca DW4/3-1] gb|ADO71861.1| Integral membrane protein MviN [Stigmatella aurantiaca DW4/3-1]		
Niben101Scf03840g01002.1	AT2G34410.1	*-*-	O-acetyltransferase family protein LENGTH=540	IPR012419 (Cas1p 10 TM acyl transferase domain)	
Niben101Scf04876g01003.1	AT1G52720.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=117		
Niben101Scf01133g07002.1			Unknown protein		
Niben101Scf13164g01001.1	emb|CDY33916.1|	***-	BnaA02g30710D [Brassica napus]		
Niben101Scf02929g00055.1	sp|P93311|RM02_ARATH	*-*-	60S ribosomal protein L2, mitochondrial		
Niben101Scf04082g07002.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02746g02004.1	ref|XP_002518178.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF44311.1| conserved hypothetical protein [Ricinus communis]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf01734g01063.1	AT3G25440.1	****	RNA-binding CRS1 / YhbY (CRM) domain protein LENGTH=444	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf07423g03003.1	AT1G29500.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf11251g00001.1	sp|B1PM81|SGF11_MUSDO	--*-	SAGA-associated factor 11 homolog	IPR013246 (SAGA complex, Sgf11 subunit)	
Niben101Scf00165g01004.1	gb|ABY88551.1|	***-	NHL1, partial [Arabidopsis thaliana]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf21231g00004.1	emb|CDY45543.1|	***-	BnaCnng13020D [Brassica napus] emb|CDY19675.1| BnaC09g29310D [Brassica napus] emb|CDX95211.1| BnaC09g16590D [Brassica napus]		
Niben101Scf02459g07002.1	AT1G22850.1	***-	SNARE associated Golgi protein family LENGTH=344		
Niben101Scf01917g11028.1	AT2G31600.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=301		
Niben101Scf05251g00011.1	sp|P53611|PGTB2_HUMAN	****	Geranylgeranyl transferase type-2 subunit beta	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR026873 (Geranylgeranyl transferase type-2 subunit beta)	GO:0003824 (catalytic activity), GO:0004663 (Rab geranylgeranyltransferase activity), GO:0018344 (protein geranylgeranylation)
Niben101Scf00747g02016.1	sp|Q9FNA9|PDAT1_ARATH	****	Phospholipid:diacylglycerol acyltransferase 1	IPR003386 (Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase)	GO:0006629 (lipid metabolic process), GO:0008374 (O-acyltransferase activity)
Niben101Scf00773g05007.1	ref|WP_028459406.1|	***-	lipase [Chloroflexus sp. Y-396-1]	IPR012908 (GPI inositol-deacylase PGAP1-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006505 (GPI anchor metabolic process), GO:0006886 (intracellular protein transport), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf21647g00003.1	sp|Q8LPF0|TAF2_ARATH	*-*-	Transcription initiation factor TFIID subunit 2		
Niben101Scf00674g03010.1	sp|Q9FME8|OPT4_ARATH	***-	Oligopeptide transporter 4	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf03888g01005.1	sp|Q8L7G4|TPS09_ARATH	--**	Terpenoid synthase 9	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf11383g00018.1	sp|P32518|DUT_SOLLC	*-*-	Deoxyuridine 5'-triphosphate nucleotidohydrolase	IPR008180 (Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase), IPR029054 (dUTPase-like)	GO:0016787 (hydrolase activity), GO:0046080 (dUTP metabolic process)
Niben101Scf00713g03016.1			Unknown protein		
Niben101Scf03350g07003.1			Unknown protein		
Niben101Scf00088g01011.1	sp|Q1MMP4|RL20_RHIL3	***-	50S ribosomal protein L20	IPR005813 (Ribosomal protein L20)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf20037g01001.1			Unknown protein		
Niben101Scf02483g02004.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01603g02004.1	sp|Q8VYR7|BOR1_ARATH	***-	Boron transporter 1	IPR003020 (Bicarbonate transporter, eukaryotic)	GO:0005452 (inorganic anion exchanger activity), GO:0006820 (anion transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf05961g03007.1	sp|Q9SU08|AUXI1_ARATH	*-*-	Auxilin-related protein 1		
Niben101Scf04361g01001.1	sp|P37218|H1_SOLLC	*-*-	Histone H1	IPR005819 (Histone H5)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf08834g00008.1	sp|P16924|P4HA1_CHICK	*-*-	Prolyl 4-hydroxylase subunit alpha-1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg10142g00003.1	ref|XP_007021390.1|	*-*-	Silencing defective 5, putative isoform 1 [Theobroma cacao] gb|EOY12915.1| Silencing defective 5, putative isoform 1 [Theobroma cacao]		
Niben101Scf05952g00018.1	AT4G31170.1	*-**	Protein kinase superfamily protein LENGTH=412	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05405g08004.1	sp|P52588|PDI_MAIZE	****	Protein disulfide-isomerase	IPR012336 (Thioredoxin-like fold)	GO:0016853 (isomerase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03502g01001.1	ref|XP_002519145.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF43356.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf11581g02015.1	sp|A3MKJ8|CLPP_BURM7	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00494g08010.1	sp|Q5VTL8|PR38B_HUMAN	*-*-	Pre-mRNA-splicing factor 38B	IPR005037 (Pre-mRNA-splicing factor 38)	
Niben101Scf03436g00009.1	sp|Q8K9H6|DEAD_BUCAP	*-**	ATP-dependent RNA helicase DeaD	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf02949g06001.1	sp|P90689|ACT_BRUMA	*-**	Actin	IPR004000 (Actin family)	GO:0005524 (ATP binding), GO:0005856 (cytoskeleton), GO:0005885 (Arp2/3 protein complex), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf01802g00003.1	AT4G36945.1	***-	PLC-like phosphodiesterases superfamily protein LENGTH=408	IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain)	GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Scf01276g00005.1	sp|P12360|CB11_SOLLC	***-	Chlorophyll a-b binding protein 6A, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf05955g00013.1	sp|O29136|RS9_ARCFU	***-	30S ribosomal protein S9	IPR000754 (Ribosomal protein S9), IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05932g02002.1	gb|KEH20808.1|	***-	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]		
Niben101Scf05997g00010.1	sp|Q9CR95|NECP1_MOUSE	***-	Adaptin ear-binding coat-associated protein 1	IPR011993 (Pleckstrin homology-like domain), IPR012466 (Adaptin ear-binding coat-associated protein 1 NECAP-1)	
Niben101Scf27034g00003.1	AT1G68670.1	***-	myb-like transcription factor family protein LENGTH=354	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07314g03003.1	sp|Q3UHX2|HAP28_MOUSE	*-*-	28 kDa heat- and acid-stable phosphoprotein	IPR019380 (Casein kinase substrate, phosphoprotein PP28)	
Niben101Scf02822g06011.1	prf||1808322A	****	stearoyl-acyl carrier protein desaturase	IPR005067 (Fatty acid desaturase, type 2), IPR009078 (Ferritin-like superfamily)	GO:0006631 (fatty acid metabolic process), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0045300 (acyl-[acyl-carrier-protein] desaturase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00449g05021.1	sp|Q9FVI1|ADF2_PETHY	****	Actin-depolymerizing factor 2	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf02294g04014.1	gb|AES90588.2|	***-	executer 1 [Medicago truncatula]	IPR021894 (Protein of unknown function DUF3506)	
Niben101Scf05912g02002.1	AT5G23720.1	****	dual specificity protein phosphatase family protein LENGTH=929	IPR011009 (Protein kinase-like domain), IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor), GO:0016791 (phosphatase activity)
Niben101Scf11061g00003.1	sp|Q9FEG2|TOM1_ARATH	***-	Tobamovirus multiplication protein 1	IPR009457 (Domain of unknown function DUF1084)	
Niben101Scf05776g00006.1	ref|XP_003599472.1|	--*-	Defensin-like protein [Medicago truncatula]		
Niben101Scf00258g01005.1	sp|Q63ZM9|ZN830_XENLA	*-*-	Zinc finger protein 830		
Niben101Scf10490g00011.1	AT1G19730.1	***-	Thioredoxin superfamily protein LENGTH=119	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf06288g00001.1			Unknown protein		
Niben101Scf03735g04002.1	sp|P62318|SMD3_HUMAN	***-	Small nuclear ribonucleoprotein Sm D3	IPR010920 (Like-Sm (LSM) domain), IPR027141 (U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3)	
Niben101Scf00611g09004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004842 (ubiquitin-protein transferase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016567 (protein ubiquitination), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05540g00010.1	ref|XP_002516369.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF45986.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf13411g04009.1	AT5G60580.2	***-	RING/U-box superfamily protein LENGTH=494	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf31493g00002.1	emb|CDY04510.1|	***-	BnaA07g13360D [Brassica napus]	IPR007033 (Transcriptional activator, plants)	
Niben101Scf07327g01003.1	sp|Q96MT1|RN145_HUMAN	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04099g02002.1			Unknown protein		
Niben101Scf03628g01012.1	ref|WP_021438129.1|	-**-	hlyD secretion family protein [Neisseria meningitidis] gb|EQD03247.1| hlyD secretion family protein [Neisseria meningitidis NM3139] gb|EQD03951.1| hlyD secretion family protein [Neisseria meningitidis NM045] gb|EQD08472.1| hlyD secretion family protein [Neisseria meningitidis NM003] gb|EQD13827.1| hlyD secretion family protein [Neisseria meningitidis NM518]		
Niben101Scf01008g01008.1	AT2G33830.2	***-	Dormancy/auxin associated family protein LENGTH=108	IPR008406 (Dormancyauxin associated)	
Niben101Scf07790g03039.1	sp|Q8C0R7|ZMY15_MOUSE	*-*-	Zinc finger MYND domain-containing protein 15	IPR002893 (Zinc finger, MYND-type)	
Niben101Scf10369g01018.1	AT1G03080.1	*-*-	kinase interacting (KIP1-like) family protein LENGTH=1733		
Niben101Scf07515g01012.1	sp|Q84WS8|U1125_ARATH	*-*-	U11/U12 small nuclear ribonucleoprotein 25 kDa protein	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf05063g04005.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02460g02007.1	AT3G51420.1	****	strictosidine synthase-like 4 LENGTH=370	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf04676g01004.1	sp|Q9CZU3|SK2L2_MOUSE	*-*-	Superkiller viralicidic activity 2-like 2		
Niben101Scf17380g00003.1	AT1G02205.3	***-	Fatty acid hydroxylase superfamily LENGTH=630	IPR021940 (Uncharacterised domain Wax2, C-terminal)	
Niben101Scf02752g06006.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01221g05018.1	AT3G24315.1	***-	Sec20 family protein LENGTH=293	IPR005606 (Sec20)	
Niben101Scf11694g01005.1	sp|O80340|ERF78_ARATH	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06187g01020.1	sp|O93866|HSP70_TRIRU	*-*-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family)	
Niben101Scf26595g00001.1	sp|P05499|ATP6_TOBAC	*-**	ATP synthase subunit a	IPR000568 (ATPase, F0 complex, subunit A)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf06458g00006.1	sp|Q3T0N3|TMCO1_BOVIN	***-	Transmembrane and coiled-coil domain-containing protein 1	IPR002809 (Protein of unknown function DUF106, transmembrane)	GO:0016020 (membrane)
Niben101Scf07650g01020.1	AT3G55410.1	****	2-oxoglutarate dehydrogenase, E1 component LENGTH=1017	IPR011603 (2-oxoglutarate dehydrogenase E1 component), IPR029061 (Thiamin diphosphate-binding fold)	GO:0004591 (oxoglutarate dehydrogenase (succinyl-transferring) activity), GO:0006099 (tricarboxylic acid cycle), GO:0008152 (metabolic process), GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor), GO:0030976 (thiamine pyrophosphate binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13000g02006.1	sp|Q9XI23|BOR4_ARATH	***-	Boron transporter 4	IPR003020 (Bicarbonate transporter, eukaryotic)	GO:0005452 (inorganic anion exchanger activity), GO:0006820 (anion transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf09192g03011.1	sp|Q5ZKY4|ING4_CHICK	***-	Inhibitor of growth protein 4	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR024610 (Inhibitor of growth protein, N-terminal), IPR028651 (ING family)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016568 (chromatin modification)
Niben101Scf01702g01012.1	sp|Q43872|PER64_ARATH	****	Peroxidase 64	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03374g06040.1	sp|Q84W04|CNIH4_ARATH	***-	Protein cornichon homolog 4	IPR003377 (Cornichon)	GO:0016020 (membrane), GO:0035556 (intracellular signal transduction)
Niben101Scf01240g10024.1			Unknown protein		
Niben101Scf01735g02019.1	AT4G00340.1	*-**	receptor-like protein kinase 4 LENGTH=818	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf04684g01013.1	AT1G35490.1	****	bZIP family transcription factor LENGTH=300	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03733g03019.1	gb|ABF99235.1|	--**	GRF zinc finger family protein, expressed [Oryza sativa Japonica Group]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf04560g03004.1	ref|XP_002523706.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38646.1| conserved hypothetical protein [Ricinus communis]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf00391g04011.1			Unknown protein		
Niben101Scf01219g06026.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf10056g01006.1	sp|Q9SZL7|FRS9_ARATH	***-	Protein FAR1-RELATED SEQUENCE 9	IPR018289 (MULE transposase domain)	
Niben101Scf39364g00014.1	sp|Q9SY02|PP301_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf11631g00006.1	gb|ACU28647.1|	*-*-	At4g14280-like protein [Arabidopsis lyrata subsp. petraea]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf06603g03015.1	sp|P93026|VSR1_ARATH	***-	Vacuolar-sorting receptor 1	IPR001881 (EGF-like calcium-binding domain), IPR003137 (Protease-associated domain, PA), IPR012336 (Thioredoxin-like fold), IPR026823 (Complement Clr-like EGF domain)	GO:0005509 (calcium ion binding)
Niben101Scf06884g01004.1	sp|Q8GW72|FUCO1_ARATH	****	Alpha-L-fucosidase 1	IPR000933 (Glycoside hydrolase, family 29), IPR008979 (Galactose-binding domain-like), IPR017853 (Glycoside hydrolase superfamily)	GO:0004560 (alpha-L-fucosidase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05348g00001.1	AT1G12500.1	***-	Nucleotide-sugar transporter family protein LENGTH=361	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf10389g01008.1	sp|O35130|NEP1_MOUSE	****	Ribosomal RNA small subunit methyltransferase NEP1	IPR005304 (Ribosomal biogenesis, methyltransferase, EMG1/NEP1), IPR029028 (Alpha/beta knot methyltransferases)	GO:0008168 (methyltransferase activity)
Niben101Scf01150g07001.1			Unknown protein		
Niben101Scf04276g04025.1	sp|Q8LG10|GAT15_ARATH	****	GATA transcription factor 15	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03060g02004.1	AT1G58330.1	****	transcription factor-related LENGTH=225	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05565g00001.1	AT1G73480.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=463	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf28682g00002.1	gb|AFO69204.1|	****	ATPase subunit 8 (mitochondrion) [Gossypium hirsutum]	IPR003319 (ATP synthase YMF19-like, N-terminal), IPR009455 (ATP synthase YMF19, uncharacterised, C-terminal)	GO:0005739 (mitochondrion), GO:0016021 (integral component of membrane), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances)
Niben101Scf07691g00024.1	sp|Q9ZS62|PHYB1_SOLLC	*-*-	Phytochrome B1	IPR009082 (Signal transduction histidine kinase, homodimeric domain)	GO:0000155 (phosphorelay sensor kinase activity), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0016020 (membrane)
Niben101Scf02407g04001.1	sp|P52174|NDKA1_BOVIN	***-	Nucleoside diphosphate kinase A 1	IPR001564 (Nucleoside diphosphate kinase)	
Niben101Scf07680g04001.1	ref|WP_025776070.1|	*-**	nucleotidase [Clostridium botulinum]	IPR010708 (5'(3')-deoxyribonucleotidase), IPR023214 (HAD-like domain)	GO:0008253 (5'-nucleotidase activity), GO:0009264 (deoxyribonucleotide catabolic process)
Niben101Scf01064g01002.1	emb|CDY43324.1|	***-	BnaC03g58960D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf01615g01002.1	emb|CDX79832.1|	***-	BnaA05g03240D [Brassica napus]		
Niben101Scf02050g01021.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03503g01003.1			Unknown protein		
Niben101Scf03145g03005.1	gb|AES64121.2|	--*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf04433g01008.1	AT1G54150.1	****	E3 Ubiquitin ligase family protein LENGTH=383	IPR022170 (Mitochondrial ubiquitin ligase activator of NFKB 1)	GO:0004842 (ubiquitin-protein transferase activity), GO:0007005 (mitochondrion organization)
Niben101Scf02194g01002.1			Unknown protein		
Niben101Scf00189g06008.1	gb|AET78879.1|	-**-	At2g46550-like protein [Arabidopsis halleri]		
Niben101Scf09061g00007.1	dbj|BAF97632.1|	***-	agmatine coumaroyltransferase [Triticum aestivum]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00887g02003.1			Unknown protein		
Niben101Scf00766g00004.1	sp|Q9LIN2|GDL53_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf07639g06004.1	sp|Q54DA7|RAB4_DICDI	***-	Ras-related protein Rab-4	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00850g01005.1	sp|Q9SEL5|VTI12_ARATH	****	Vesicle transport v-SNARE 12	IPR007705 (Vesicle transport v-SNARE, N-terminal), IPR010989 (t-SNARE)	GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf01472g03010.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07244g01004.1	sp|Q38857|XTH22_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf11608g01010.1	AT5G19900.1	*-*-	PRLI-interacting factor, putative LENGTH=494		
Niben101Scf01094g01009.1	AT1G28510.1	***-	Optic atrophy 3 protein (OPA3) LENGTH=171	IPR010754 (Optic atrophy 3-like)	
Niben101Scf05536g01011.1	AT1G11390.1	***-	Protein kinase superfamily protein LENGTH=624	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00317g01005.1	AT1G73190.1	*-*-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf06919g00019.1	AT3G07480.1	***-	2Fe-2S ferredoxin-like superfamily protein LENGTH=159	IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf18273g00004.1			Unknown protein		
Niben101Scf08334g01011.1	AT1G35490.1	****	bZIP family transcription factor LENGTH=300	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf10713g00040.1	gb|ACF19789.1|	*-**	NAC transcription factor [Nicotiana tabacum]	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05948g07012.1	sp|P35402|ERD2A_ARATH	****	ER lumen protein-retaining receptor A	IPR000133 (ER lumen protein retaining receptor)	GO:0006621 (protein retention in ER lumen), GO:0016021 (integral component of membrane), GO:0046923 (ER retention sequence binding)
Niben101Scf03733g05002.1	sp|Q54LX0|CBPM_DICDI	****	Calcium-binding protein M	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02535g04015.1	emb|CDY41141.1|	*-*-	BnaA09g38740D [Brassica napus]	IPR009902 (Protein of unknown function DUF1442)	
Niben101Ctg13629g00002.1	sp|Q652P9|GL93_ORYSJ	***-	Germin-like protein 9-3	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf14538g00005.1	sp|P86934|EF1A1_TRYB2	***-	Elongation factor 1-alpha 1	IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf11653g01012.1	sp|Q9C5W9|ARFR_ARATH	****	Auxin response factor 18	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf10997g03005.1	sp|O23474|PER40_ARATH	****	Peroxidase 40	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03294g01007.1			Unknown protein		
Niben101Scf07155g03019.1	sp|O75175|CNOT3_HUMAN	*-**	CCR4-NOT transcription complex subunit 3	IPR012270 (CCR4-NOT complex, subunit 3/ 5)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf14591g00001.1	sp|Q6NLG7|RFA3B_ARATH	****	Replication protein A 14 kDa subunit B	IPR013970 (Replication factor A protein 3)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0006310 (DNA recombination)
Niben101Ctg10276g00001.1	sp|O65373|BAG5_ARATH	*-*-	BAG family molecular chaperone regulator 5, mitochondrial		
Niben101Scf03035g02006.1	AT4G28400.1	***-	Protein phosphatase 2C family protein LENGTH=283	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf00294g02004.1	sp|Q9SF32|IQD1_ARATH	*-*-	Protein IQ-DOMAIN 1	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf02429g05006.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf03712g00010.1	sp|Q8TW10|PSB_METKA	****	Proteasome subunit beta	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf00177g01008.1			Unknown protein		
Niben101Scf05368g06017.1	AT3G49670.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1002	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00593g04015.1	sp|P0CB49|YLPM1_RAT	*-*-	YLP motif-containing protein 1	IPR026314 (YLP motif-containing protein 1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005634 (nucleus)
Niben101Scf01631g00002.1	sp|P43509|CPR5_CAEEL	****	Cathepsin B-like cysteine proteinase 5	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf12994g00008.1	sp|Q9LS42|CASP_ARATH	***-	Protein CASP	IPR012955 (CASP, C-terminal)	GO:0006891 (intra-Golgi vesicle-mediated transport), GO:0030173 (integral component of Golgi membrane)
Niben101Scf02590g01004.1	sp|Q7XSK2|BGL16_ORYSJ	***-	Beta-glucosidase 16	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02849g07002.1	emb|CAE04909.2|	--*-	OSJNBa0082E08.6 [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf01750g12001.1	sp|Q94F58|NAC89_ARATH	***-	NAC domain-containing protein 89	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf23241g00003.1	sp|O80341|EF102_ARATH	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00219g07014.1	AT1G75170.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=296	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf14922g00030.1	sp|Q921I0|ORML1_MOUSE	***-	ORM1-like protein 1	IPR007203 (ORMDL family)	GO:0005789 (endoplasmic reticulum membrane), GO:0016021 (integral component of membrane)
Niben101Scf07491g00015.1	AT4G35240.1	***-	Protein of unknown function (DUF630 and DUF632) LENGTH=865	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf04455g00010.1	gb|AAK20906.1|	*-*-	plastid-targeted protein 2 [Craterostigma plantagineum]		
Niben101Scf00074g02029.1	sp|Q9CAZ0|SKI24_ARATH	*-*-	F-box protein SKIP24		
Niben101Scf02042g02001.1	sp|Q9M7K4|POT5_ARATH	*-**	Potassium transporter 5	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf03720g01001.1	AT4G16210.1	***-	enoyl-CoA hydratase/isomerase A LENGTH=265	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Ctg15635g00003.1	AT5G43170.1	***-	zinc-finger protein 3 LENGTH=193	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf01297g01006.1			Unknown protein		
Niben101Scf01977g02010.1	AT4G01037.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=528	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf00285g08001.1	tpg|DAA60304.1|	*-*-	TPA: hypothetical protein ZEAMMB73_962217 [Zea mays]		
Niben101Scf00492g04001.1	sp|P57796|CABP4_HUMAN	*-**	Calcium-binding protein 4	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf09582g01009.1	sp|Q9SIT7|PP151_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf13227g00029.1	AT5G48960.1	***-	HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase LENGTH=642	IPR008380 (HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase), IPR023214 (HAD-like domain)	
Niben101Scf07939g00014.1	sp|Q0SZN5|GLGA_SHIF8	*-*-	Glycogen synthase	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf01393g02003.1			Unknown protein		
Niben101Scf01221g20005.1			Unknown protein		
Niben101Scf08445g02016.1	AT2G07772.1	*-*-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=179		
Niben101Scf01934g04026.1	ref|XP_007035788.1|	***-	Nucleic acid-binding proteins superfamily isoform 3 [Theobroma cacao] gb|EOY06714.1| Nucleic acid-binding proteins superfamily isoform 3 [Theobroma cacao]		
Niben101Scf36313g00004.1	sp|Q9FFK1|SYP31_ARATH	*-*-	Syntaxin-31	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf02452g06021.1	AT1G21610.3	*-*-	wound-responsive family protein LENGTH=685		
Niben101Scf01517g07007.1	sp|Q3ZBC0|RPAB4_BOVIN	*-**	DNA-directed RNA polymerases I, II, and III subunit RPABC4	IPR006591 (RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4), IPR029040 (RNA polymerase subunit RPABC4/transcription elongation factor Spt4)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf03048g01017.1	sp|O81635|ATK4_ARATH	*-**	Kinesin-4	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf04118g03012.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf06825g04024.1	sp|Q6EU39|MADS6_ORYSJ	****	MADS-box transcription factor 6	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf18129g01006.1	sp|Q89A53|SSB_BUCBP	****	Single-stranded DNA-binding protein	IPR000424 (Primosome PriB/single-strand DNA-binding)	GO:0003697 (single-stranded DNA binding), GO:0006260 (DNA replication)
Niben101Scf12258g00006.1	sp|Q949T8|ASHR3_ARATH	*-*-	Histone-lysine N-methyltransferase ASHR3		
Niben101Scf00650g04004.1	gb|AAF76312.1|AF220603_4	*-*-	Prf [Solanum lycopersicum]		
Niben101Scf08871g02001.1	gb|AAK20906.1|	--*-	plastid-targeted protein 2 [Craterostigma plantagineum]		
Niben101Scf06357g00029.1	AT1G19250.1	*-**	flavin-dependent monooxygenase 1 LENGTH=530	IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11291g01002.1	AT5G25280.1	***-	serine-rich protein-related LENGTH=220		
Niben101Scf05051g02002.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf09658g00034.1	sp|E1BHJ4|CP26B_BOVIN	--*-	Cytochrome P450 26B1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01063g03006.1	dbj|BAB01940.1|	--*-	non-LTR retrolelement reverse transcriptase-like protein [Arabidopsis thaliana]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf10048g02002.1	gb|KEH32844.1|	--*-	U-box kinase family protein [Medicago truncatula]	IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf03885g00001.1	sp|Q06397|DERL1_ORYSJ	***-	Derlin-1		
Niben101Scf11355g01022.1	emb|CDX70646.1|	***-	BnaC03g07300D [Brassica napus]		
Niben101Scf09107g00008.1	sp|Q68S26|PSBA_PANGI	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf08627g00008.1	sp|O65351|SUBL_ARATH	--*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf01102g05008.1	sp|O23090|BH014_ARATH	***-	Transcription factor bHLH14	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf00451g00031.1	sp|Q8W1Y0|SSC14_ARATH	*-*-	Sister chromatid cohesion 1 protein 4	IPR023093 (Rad21/Rec8-like protein, C-terminal)	GO:0000228 (nuclear chromosome)
Niben101Scf04287g06008.1			Unknown protein		
Niben101Scf03419g03006.1	gb|ABF98677.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR021414 (Protein of unknown function DUF3054)	
Niben101Scf01382g04009.1	AT4G30720.1	****	FAD/NAD(P)-binding oxidoreductase family protein LENGTH=707	IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04844g00005.1	sp|Q9ZPE7|EXO_ARATH	*-*-	Protein EXORDIUM	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf12205g01016.1	sp|Q9C7N4|GDL15_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf06117g02002.1	gb|KEH39104.1|	*-*-	regulator of Vps4 activity in the MVB pathway protein [Medicago truncatula]		
Niben101Scf14741g00002.1	ref|NP_001233978.1|	--*-	extensin-like protein Dif54 precursor [Solanum lycopersicum] emb|CAA67814.1| extensin-like protein Dif54 [Solanum lycopersicum]		
Niben101Scf00247g01004.1	sp|Q9LYB9|MBD4_ARATH	****	Methyl-CpG-binding domain-containing protein 4	IPR011124 (Zinc finger, CW-type), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf17276g00002.1			Unknown protein		
Niben101Ctg15523g00001.1	AT1G30910.1	*-*-	Molybdenum cofactor sulfurase family protein LENGTH=318		
Niben101Scf00132g02004.1	AT5G42050.1	*-*-	DCD (Development and Cell Death) domain protein LENGTH=349	IPR013989 (Development/cell death domain)	
Niben101Scf00202g02007.1	ref|XP_002530829.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF31542.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08364g00014.1	sp|Q84TE6|NAC22_ARATH	*-*-	NAC domain-containing protein 21/22	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05645g03007.1	sp|Q54NZ7|ALRB_DICDI	****	Aldose reductase B	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00355g01006.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf14755g00022.1	AT5G14430.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=612	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf04132g02001.1	sp|Q8VZW1|NIP11_ARATH	*-*-	Aquaporin NIP1-1	IPR023271 (Aquaporin-like)	
Niben101Scf00582g01036.1	emb|CDX76196.1|	***-	BnaA04g04600D [Brassica napus]		
Niben101Scf04377g03012.1	sp|Q6NKW9|E138_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 8	IPR000490 (Glycoside hydrolase, family 17), IPR004252 (Probable transposase, Ptta/En/Spm, plant), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01774g10014.1	emb|CBM56257.1|	*-**	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03488g04003.1	gb|AAU95637.1|	*-*-	R1 [Solanum tuberosum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf08627g00006.1	sp|Q7Z6K3|PTAR1_HUMAN	*-*-	Protein prenyltransferase alpha subunit repeat-containing protein 1		
Niben101Scf01399g00021.1	AT4G04630.1	***-	Protein of unknown function, DUF584 LENGTH=168	IPR007608 (Senescence regulator S40)	
Niben101Scf04289g01010.1	AT1G60140.1	****	trehalose phosphate synthase LENGTH=861	IPR001830 (Glycosyl transferase, family 20), IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf00744g08013.1			Unknown protein		
Niben101Scf11004g00001.1	sp|A8WGS4|TLCD2_DANRE	*-*-	TLC domain-containing protein 2	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf12205g01018.1	sp|Q9FK75|GDL82_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02174g03011.1	AT5G49830.2	***-	exocyst complex component 84B LENGTH=814	IPR016159 (Cullin repeat-like-containing domain)	
Niben101Scf01506g03001.1	AT5G60900.1	*-**	receptor-like protein kinase 1 LENGTH=748	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08156g08019.1	sp|O14981|BTAF1_HUMAN	****	TATA-binding protein-associated factor 172	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR016024 (Armadillo-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005488 (binding), GO:0005524 (ATP binding)
Niben101Scf01683g17008.1	sp|Q3UHA3|SPTCS_MOUSE	*-*-	Spatacsin	IPR028103 (Spatacsin), IPR028107 (Spatacsin, C-terminal domain)	
Niben101Scf04175g00012.1	sp|Q7WTR3|MDTK_ERWAM	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02824g03028.1	sp|Q6AXX6|F213A_RAT	*-*-	Redox-regulatory protein FAM213A	IPR012336 (Thioredoxin-like fold)	
Niben101Scf00185g04002.1	sp|P49755|TMEDA_HUMAN	***-	Transmembrane emp24 domain-containing protein 10	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf30596g00001.1			Unknown protein		
Niben101Scf11355g01024.1	gb|ABB69784.1|	****	beta-glucan-binding protein 4 [Medicago truncatula]	IPR005200 (Endo-1,3(4)-beta-glucanase)	GO:0016998 (cell wall macromolecule catabolic process), GO:0052861 (glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group), GO:0052862 (glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group)
Niben101Scf04473g01003.1	sp|O14368|HSP16_SCHPO	--*-	Heat shock protein 16	IPR008978 (HSP20-like chaperone)	
Niben101Scf02571g00002.1	sp|Q94758|DYL1_SCHMA	*-*-	Dynein light chain	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Scf28115g00001.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf11168g00009.1	sp|Q9Y719|MOK13_SCHPO	--*-	Cell wall alpha-1,3-glucan synthase mok13		
Niben101Scf03851g02018.1	gb|ABB69784.1|	*-**	beta-glucan-binding protein 4 [Medicago truncatula]	IPR005200 (Endo-1,3(4)-beta-glucanase)	GO:0016998 (cell wall macromolecule catabolic process), GO:0052861 (glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group), GO:0052862 (glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group)
Niben101Scf02030g00023.1	AT5G25590.1	*-*-	Protein of unknown function (DUF630 and DUF632) LENGTH=775	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf13776g01007.1	gb|KEH17101.1|	***-	peptidyl serine alpha-galactosyltransferase [Medicago truncatula]		
Niben101Scf01750g08003.1			Unknown protein		
Niben101Scf01634g05012.1	sp|F4J2K2|FPGS2_ARATH	****	Folylpolyglutamate synthase	IPR001645 (Folylpolyglutamate synthetase)	GO:0004326 (tetrahydrofolylpolyglutamate synthase activity), GO:0005524 (ATP binding), GO:0009058 (biosynthetic process), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0016874 (ligase activity)
Niben101Scf08649g00003.1	AT2G34750.1	*-*-	RNA polymerase I specific transcription initiation factor RRN3 protein LENGTH=613	IPR007991 (RNA polymerase I specific transcription initiation factor RRN3)	
Niben101Scf05962g00002.1	sp|Q6Z6W2|MAD57_ORYSJ	--*-	MADS-box transcription factor 57	IPR002100 (Transcription factor, MADS-box), IPR008566 (Herpesvirus UL96/Rhadinovirus)	
Niben101Scf08516g03012.1	AT5G11090.1	***-	serine-rich protein-related LENGTH=217		
Niben101Scf03832g01006.1	sp|P29545|EF1B_ORYSJ	*-**	Elongation factor 1-beta	IPR014717 (Translation elongation factor EF1B/ribosomal protein S6)	GO:0003746 (translation elongation factor activity), GO:0005853 (eukaryotic translation elongation factor 1 complex), GO:0006414 (translational elongation)
Niben101Scf00321g03008.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf29588g00003.1	sp|Q8GYX0|MOB1_ARATH	***-	MOB kinase activator-like 1	IPR005301 (Mob1/phocein)	
Niben101Scf03473g01013.1	ref|XP_003602918.1|	--*-	Sentrin-specific protease [Medicago truncatula]		
Niben101Scf01423g05003.1	sp|Q9FM94|FBD21_ARATH	*-*-	FBD-associated F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01429g02010.1	sp|Q9SRM9|ALMT8_ARATH	****	Aluminum-activated malate transporter 8	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf02407g10004.1	sp|C0SVM5|BBX19_ARATH	*-*-	B-box zinc finger protein 19		
Niben101Scf03093g00018.1	AT5G37350.1	****	Serine/threonine-protein kinase Rio1 LENGTH=531	IPR017407 (Serine/threonine-protein kinase Rio1)	GO:0003824 (catalytic activity), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07751g01020.1	emb|CDY05369.1|	*-*-	BnaC02g40770D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf05262g00019.1	ref|NP_568790.1|	***-	ubiquitin-associated/translation elongation factor EF1B protein [Arabidopsis thaliana] gb|AAM61092.1| proline-rich cell wall protein-like [Arabidopsis thaliana] gb|AED96340.1| ubiquitin-associated/translation elongation factor EF1B protein [Arabidopsis thaliana]	IPR009060 (UBA-like), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote)	GO:0005515 (protein binding)
Niben101Scf00185g01001.1	emb|CBY05509.1|	***-	ASR4 protein [Solanum peruvianum]	IPR003496 (ABA/WDS induced protein)	GO:0006950 (response to stress)
Niben101Scf07398g01010.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00219g07016.1	AT1G75180.1	***-	Erythronate-4-phosphate dehydrogenase family protein LENGTH=315		
Niben101Scf01163g00001.1	AT1G19640.1	****	jasmonic acid carboxyl methyltransferase LENGTH=389	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf08041g01020.1	sp|Q9SVP7|PP307_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00899g01001.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf03224g05018.1	sp|Q9QYF1|RDH11_MOUSE	--*-	Retinol dehydrogenase 11		
Niben101Scf14121g00002.1	AT1G72450.1	*-*-	jasmonate-zim-domain protein 6 LENGTH=269	IPR010399 (Tify)	
Niben101Scf08643g00002.1	ref|NP_001052728.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf04001g03022.1	sp|O16102|CHD3_DROME	--**	Chromodomain-helicase-DNA-binding protein 3	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02215g01010.1	ref|XP_007033409.1|	***-	Sarcolemmal membrane-associated protein, putative isoform 2 [Theobroma cacao] gb|EOY04335.1| Sarcolemmal membrane-associated protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf02479g01001.1	gb|ADD00719.1|	*-*-	ataxin 3 variant ref [Homo sapiens]	IPR006155 (Machado-Joseph disease protein MJD)	GO:0008242 (omega peptidase activity)
Niben101Scf05071g00003.1	sp|Q5PNY6|PUB21_ARATH	***-	U-box domain-containing protein 21	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf10440g00025.1			Unknown protein		
Niben101Scf04185g04011.1	AT5G64740.1	****	cellulose synthase 6 LENGTH=1084	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf02996g06002.1	sp|Q0BQE6|ATPA_GRABC	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf03857g04003.1	emb|CDX98312.1|	--*-	BnaC06g16730D [Brassica napus]		
Niben101Scf08940g01004.1	AT1G67640.1	***-	Transmembrane amino acid transporter family protein LENGTH=441	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf06799g01005.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf00766g00003.1	ref|WP_026720130.1|	*-*-	histidine kinase [Fischerella sp. PCC 9431]	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf01339g00008.1	AT2G31500.1	****	calcium-dependent protein kinase 24 LENGTH=582	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04183g01003.1	sp|Q6DR10|TBL43_ARATH	*-*-	Protein trichome birefringence-like 43	IPR026057 (PC-Esterase)	
Niben101Scf00885g13009.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf03321g06005.1	AT3G55850.2	***-	Amidohydrolase family LENGTH=583	IPR011059 (Metal-dependent hydrolase, composite domain), IPR013108 (Amidohydrolase 3)	GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf02090g03011.1	sp|Q9NU22|MDN1_HUMAN	--*-	Midasin	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03009g03008.1	sp|O80641|GASA8_ARATH	***-	Gibberellin-regulated protein 8	IPR003854 (Gibberellin regulated protein)	
Niben101Scf08820g00011.1	sp|Q75ZX4|ADH1_ORYSI	*-*-	Alcohol dehydrogenase 1	IPR016040 (NAD(P)-binding domain)	
Niben101Scf02243g06017.1	AT1G06190.1	****	Rho termination factor LENGTH=401	IPR011112 (Rho termination factor, N-terminal)	GO:0006353 (DNA-templated transcription, termination)
Niben101Scf02467g01008.1	sp|Q5XIA4|CNO10_RAT	*-*-	CCR4-NOT transcription complex subunit 10	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06578g00015.1	sp|Q9LPZ3|Y1141_ARATH	****	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf04033g02022.1	gb|ABJ99598.1|	*-*-	NBS-LRR type resistance protein [Beta vulgaris]		
Niben101Scf01521g04009.1	sp|P49132|TPT_FLATR	***-	Triose phosphate/phosphate translocator, chloroplastic	IPR004696 (Triose phosphate/phosphoenolpyruvate translocator), IPR004853 (Triose-phosphate transporter domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf05548g01002.1			Unknown protein		
Niben101Scf37767g00011.1	AT1G08800.1	*-*-	Protein of unknown function, DUF593 LENGTH=1113	IPR007656 (Zein-binding domain)	
Niben101Scf11723g00020.1	ref|XP_006384446.1|	--*-	heavy-metal-associated domain-containing family protein [Populus trichocarpa] gb|ERP62243.1| heavy-metal-associated domain-containing family protein [Populus trichocarpa]		
Niben101Scf03227g03022.1	sp|C0RF52|ATPA_BRUMB	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf20904g00012.1	AT5G11730.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=386	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf14295g00008.1			Unknown protein		
Niben101Scf03595g18011.1	sp|Q9SU29|UPL5_ARATH	*-**	E3 ubiquitin-protein ligase UPL5	IPR000569 (HECT)	GO:0004842 (ubiquitin-protein transferase activity)
Niben101Scf00240g01002.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04252g00009.1	sp|Q8W104|FBL17_ARATH	***-	F-box/LRR-repeat protein 17	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf22060g00002.1	sp|P0CT12|H2A_MAGO7	***-	Histone H2A	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf08041g02012.1	sp|Q9Y6U7|RN215_HUMAN	--*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf00327g00001.1			Unknown protein		
Niben101Scf06736g07006.1	AT3G28740.1	*-*-	Cytochrome P450 superfamily protein LENGTH=509	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04225g02007.1	sp|A4XL70|IF2_CALS8	****	Translation initiation factor IF-2	IPR005225 (Small GTP-binding protein domain), IPR009000 (Translation protein, beta-barrel domain), IPR015760 (Translation initiation factor IF- 2), IPR023115 (Translation initiation factor IF- 2, domain 3), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003743 (translation initiation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006413 (translational initiation)
Niben101Scf03114g00011.1	sp|O04616|CUT1A_ARATH	***-	Protein CURVATURE THYLAKOID 1A, chloroplastic	IPR025564 (Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain)	
Niben101Scf01123g00008.1	sp|Q20390|PPT1_CAEEL	****	Palmitoyl-protein thioesterase 1	IPR002472 (Palmitoyl protein thioesterase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0002084 (protein depalmitoylation), GO:0008474 (palmitoyl-(protein) hydrolase activity), GO:0098599 (palmitoyl hydrolase activity)
Niben101Scf03446g12011.1	sp|Q1G391|FB217_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf03488g06006.1	sp|F4JUL9|ARPC4_ARATH	****	Actin-related protein 2/3 complex subunit 4	IPR008384 (Actin-related protein 2/3 complex subunit 4)	GO:0005885 (Arp2/3 protein complex), GO:0015629 (actin cytoskeleton), GO:0030041 (actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf04205g04009.1	sp|Q08069|RS8_MAIZE	***-	40S ribosomal protein S8	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf16986g00007.1	ref|NP_001047002.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf01339g02017.1	sp|Q6LXN1|RS13_METMP	***-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH), IPR027437 (30s ribosomal protein S13, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02062g01001.1	sp|Q6PDI5|ECM29_MOUSE	*-*-	Proteasome-associated protein ECM29 homolog	IPR016024 (Armadillo-type fold), IPR026827 (Proteasome component ECM29/Translational activator GCN1)	GO:0005488 (binding)
Niben101Scf07034g07004.1			Unknown protein		
Niben101Scf01483g03010.1	gb|KEH22364.1|	*-*-	zinc ion-binding protein [Medicago truncatula]		
Niben101Scf08523g00014.1	sp|O48520|DPOD2_ARATH	*-*-	DNA polymerase delta small subunit	IPR024826 (DNA polymerase delta/II small subunit family)	
Niben101Scf01060g01001.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf14814g00022.1	sp|Q5JIZ5|TKSP_THEKO	*-**	Subtilisin-like serine protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02074g01039.1	ref|XP_003588337.1|	*-*-	Ribosomal protein S10 [Medicago truncatula]		
Niben101Scf10919g01012.1	sp|Q27601|PUR1_DROME	****	Amidophosphoribosyltransferase	IPR005854 (Amidophosphoribosyl transferase), IPR029055 (Nucleophile aminohydrolases, N-terminal), IPR029057 (Phosphoribosyltransferase-like)	GO:0004044 (amidophosphoribosyltransferase activity), GO:0008152 (metabolic process), GO:0009113 (purine nucleobase biosynthetic process), GO:0009116 (nucleoside metabolic process)
Niben101Scf04632g09012.1	sp|P14232|TGA1A_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1A	IPR001630 (cAMP response element binding (CREB) protein), IPR004827 (Basic-leucine zipper domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03555g03009.1	sp|Q3T062|RRP15_BOVIN	*-*-	RRP15-like protein	IPR012459 (Protein of unknown function DUF1665)	
Niben101Scf04980g00025.1	sp|Q5FFV3|RS14_EHRRG	--*-	30S ribosomal protein S14	IPR001209 (Ribosomal protein S14), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07152g01001.1	AT3G10405.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen development; LOCATED IN: chloroplast; Has 44 Blast hits to 44 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=212		
Niben101Scf01635g02004.1	sp|Q8VZG1|DGK3_ARATH	****	Diacylglycerol kinase 3	IPR000756 (Diacylglycerol kinase, accessory domain), IPR001206 (Diacylglycerol kinase, catalytic domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf04003g08001.1	sp|O24151|CAMT4_TOBAC	****	Caffeoyl-CoA O-methyltransferase 4	IPR002935 (O-methyltransferase, family 3), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008171 (O-methyltransferase activity)
Niben101Scf02972g00008.1	gb|AFP90330.1|	*-**	transcription factor 2 [Pinus densata]	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06976g03016.1	AT1G15910.1	*-*-	XH/XS domain-containing protein LENGTH=634		
Niben101Scf00612g01003.1	AT3G24020.1	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=243	IPR004265 (Plant disease resistance response protein)	
Niben101Scf06408g03002.1	sp|O24160|TGA21_TOBAC	*-**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf17487g00007.1	sp|Q9FM93|FBD38_ARATH	--*-	FBD-associated F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00643g01001.1	gb|AIE43911.1|	***-	WRKY transcription factor 93 [Gossypium hirsutum]	IPR018872 (Zn-cluster domain)	
Niben101Scf09100g02007.1	sp|Q9LQ16|PPR94_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01689g06005.1	sp|P49689|RS30_ARATH	***-	40S ribosomal protein S30	IPR006846 (Ribosomal protein S30)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06876g00002.1	sp|Q9JI10|STK3_MOUSE	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03171g01003.1	sp|Q9M9L0|APC11_ARATH	****	Anaphase-promoting complex subunit 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR024991 (Anaphase-promoting complex subunit 11)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005680 (anaphase-promoting complex), GO:0008270 (zinc ion binding)
Niben101Scf04316g01006.1	AT4G21270.1	****	kinesin 1 LENGTH=793	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00149g03009.1	gb|ABV21218.1|	***-	[Arabidopsis thaliana]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf00397g06001.1	sp|Q9M205|CCU22_ARATH	****	Cyclin-U2-2	IPR013763 (Cyclin-like), IPR013922 (Cyclin PHO80-like)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0019901 (protein kinase binding)
Niben101Scf00960g03009.1			Unknown protein	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf01961g00009.1			Unknown protein		
Niben101Scf05222g04012.1	sp|B0BT96|GLGB_ACTPJ	****	1,4-alpha-glucan branching enzyme GlgB	IPR013780 (Glycosyl hydrolase, family 13, all-beta), IPR015902 (Glycoside hydrolase, family 13)	GO:0003824 (catalytic activity), GO:0003844 (1,4-alpha-glucan branching enzyme activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0005978 (glycogen biosynthetic process), GO:0043169 (cation binding)
Niben101Scf02929g06030.1	sp|C6BJN9|NUOK_RALP1	*-**	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K), IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf02668g05013.1	sp|Q06A37|CHD7_CHICK	*-*-	Chromodomain-helicase-DNA-binding protein 7	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02278g00016.1	gb|AFW65822.1|	***-	COV1 [Zea mays]	IPR007462 (Protein of unknown function DUF502)	
Niben101Scf00466g04030.1	gb|AES61663.2|	*-*-	histidine kinase 1 [Medicago truncatula]		
Niben101Scf09459g02003.1	sp|Q95RC0|NAA30_DROME	*-**	N-alpha-acetyltransferase 30	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf11071g04005.1	AT1G73805.1	***-	Calmodulin binding protein-like LENGTH=451	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf01203g00005.1	emb|CDY32968.1|	***-	BnaA09g16250D [Brassica napus]		
Niben101Scf02792g01006.1	gb|KEH43027.1|	***-	MtN26 [Medicago truncatula]		
Niben101Scf00291g02004.1	sp|Q9P804|TRM1_SCHPO	--*-	tRNA (guanine(26)-N(2))-dimethyltransferase		
Niben101Scf05109g03007.1	sp|Q96NW7|LRRC7_HUMAN	*-*-	Leucine-rich repeat-containing protein 7	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02750g04030.1	sp|Q8LRK8|HDA18_ARATH	*-*-	Histone deacetylase 18	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	
Niben101Scf10468g00008.1	sp|Q0IQU1|LAC22_ORYSJ	*-*-	Laccase-22	IPR008972 (Cupredoxin)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03202g12016.1	AT5G01550.1	****	lectin receptor kinase a4.1 LENGTH=688	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf01676g01007.1	sp|Q86I81|MCFI_DICDI	***-	Mitochondrial substrate carrier family protein I	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf00744g02025.1			Unknown protein	IPR028265 (M-phase-specific PLK1-interacting protein-like)	
Niben101Scf00868g07005.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06305g04006.1			Unknown protein		
Niben101Scf10630g01003.1	sp|Q96JB2|COG3_HUMAN	****	Conserved oligomeric Golgi complex subunit 3	IPR007265 (Conserved oligomeric Golgi complex, subunit 3), IPR016159 (Cullin repeat-like-containing domain)	GO:0005801 (cis-Golgi network), GO:0006886 (intracellular protein transport), GO:0016020 (membrane)
Niben101Scf03867g02012.1	AT5G49830.2	*-*-	exocyst complex component 84B LENGTH=814	IPR016159 (Cullin repeat-like-containing domain)	
Niben101Scf07790g02001.1	sp|O80690|BGL46_ARATH	*-*-	Beta-glucosidase 46	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06026g02013.1	sp|Q12339|UTP23_YEAST	*-*-	rRNA-processing protein UTP23	IPR006984 (rRNA-processing protein Fcf1/Utp23), IPR029060 (PIN domain-like)	GO:0032040 (small-subunit processome)
Niben101Scf11264g01008.1	sp|Q2HJ10|ZNT2_MOUSE	*-**	Zinc transporter 2	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf18696g00010.1	sp|P40973|PLY_LILLO	****	Pectate lyase	IPR007524 (Pectate lyase, N-terminal), IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	GO:0030570 (pectate lyase activity)
Niben101Scf04827g04021.1	sp|Q9SS60|PP210_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05892g00005.1			Unknown protein		
Niben101Scf04314g01001.1	sp|Q8VY97|Y4213_ARATH	***-	ER membrane protein complex subunit 7 homolog	IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain), IPR019008 (Domain of unknown function DUF2012)	GO:0030246 (carbohydrate binding)
Niben101Ctg14871g00001.1	sp|P13678|KPC3_DROME	*-**	Protein kinase C	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12024g00010.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]	IPR002182 (NB-ARC), IPR021929 (Late blight resistance protein R1)	GO:0043531 (ADP binding)
Niben101Scf01738g05005.1	ref|NP_001055703.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf05203g05003.1	sp|Q4WVM7|ATM_ASPFU	*-*-	Serine/threonine-protein kinase tel1	IPR011009 (Protein kinase-like domain), IPR014009 (PIK-related kinase)	GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf02764g00002.1	AT1G07160.1	****	Protein phosphatase 2C family protein LENGTH=380	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf09438g00002.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01691g01021.1	sp|C6XAJ7|NUOK_METGS	*-**	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf00970g02006.1	sp|A6T4F5|DNAJ_KLEP7	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf08675g00018.1	sp|Q9UBV2|SE1L1_HUMAN	***-	Protein sel-1 homolog 1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08544g01001.1	sp|Q97BX2|RL22_THEVO	****	50S ribosomal protein L22	IPR001063 (Ribosomal protein L22/L17)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf07678g07010.1	sp|Q0WPS2|B561M_ARATH	***-	Cytochrome b561 domain-containing protein	IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf01847g00018.1	emb|CDX94272.1|	*-*-	BnaC02g29320D [Brassica napus]		
Niben101Scf00929g00004.1	sp|O64823|MCU2_ARATH	***-	Calcium uniporter protein 2, mitochondrial	IPR006769 (Coiled-coil domain containing protein 109, C-terminal)	
Niben101Scf00953g04019.1	AT4G36590.1	*-*-	MADS-box transcription factor family protein LENGTH=248	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf15809g02003.1	ref|NP_178215.1|	*-*-	zinc ion binding / nucleic acid binding protein [Arabidopsis thaliana] gb|AAF18653.1| hypothetical protein [Arabidopsis thaliana] gb|AEC05391.1| zinc ion binding / nucleic acid binding protein [Arabidopsis thaliana]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00862g00010.1	AT2G27080.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=260	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf03842g01014.1	sp|Q8LPJ7|RS262_ARATH	***-	40S ribosomal protein S26-2	IPR000892 (Ribosomal protein S26e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03171g03017.1	sp|B9SBU9|TPS5_RICCO	****	Terpene synthase 5	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf10650g02002.1	ref|WP_006608805.1|	--*-	membrane protein [Mycoplasma columbinum] gb|EGV00192.1| hypothetical protein MCSF7_02001 [Mycoplasma columbinum SF7]		
Niben101Scf00153g00010.1	sp|Q68FK8|DHX9_XENLA	--**	ATP-dependent RNA helicase A-like protein	IPR007502 (Helicase-associated domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004386 (helicase activity)
Niben101Scf02790g01008.1	sp|Q9SLD2|DGAT1_ARATH	****	Diacylglycerol O-acyltransferase 1	IPR004299 (Membrane bound O-acyl transferase, MBOAT)	GO:0004144 (diacylglycerol O-acyltransferase activity), GO:0008374 (O-acyltransferase activity), GO:0019432 (triglyceride biosynthetic process)
Niben101Scf00745g00015.1	sp|P0C0Y3|PROF_FRAAN	***-	Profilin	IPR005455 (Profilin), IPR027310 (Profilin conserved site)	GO:0003779 (actin binding)
Niben101Scf08794g00003.1	AT3G55440.1	****	triosephosphate isomerase LENGTH=254	IPR000652 (Triosephosphate isomerase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004807 (triose-phosphate isomerase activity), GO:0008152 (metabolic process)
Niben101Scf03267g00074.1	emb|CCH50966.1|	--*-	T4.5 [Malus x robusta]		
Niben101Scf01377g01015.1			Unknown protein		
Niben101Scf03577g01010.1	sp|Q0J0S6|TOP3B_ORYSJ	*-**	DNA topoisomerase 3-beta	IPR000380 (DNA topoisomerase, type IA)	GO:0003677 (DNA binding), GO:0003917 (DNA topoisomerase type I activity), GO:0006265 (DNA topological change)
Niben101Scf02340g06003.1	sp|Q52QH4|NAC68_ORYSJ	***-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00272g02007.1	sp|Q9C793|AGO7_ARATH	***-	Protein argonaute 7	IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf03407g02002.1	sp|Q9ZNU2|NAC18_ARATH	*-*-	NAC domain-containing protein 18	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03805g00011.1	sp|Q7MVE9|FOLD_PORGI	***-	Bifunctional protein FolD	IPR000672 (Tetrahydrofolate dehydrogenase/cyclohydrolase)	GO:0003824 (catalytic activity), GO:0004488 (methylenetetrahydrofolate dehydrogenase (NADP+) activity), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf00339g16006.1	emb|CDZ14850.1|	--*-	conserved Plasmodium protein, unknown function [Plasmodium yoelii]		
Niben101Scf04932g00006.1			Unknown protein		
Niben101Scf00381g05001.1	sp|O22757|MLO8_ARATH	*-*-	MLO-like protein 8	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf03259g00007.1	sp|Q9FI27|TPS20_ARATH	*-**	Terpenoid synthase 20	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf03790g01011.1	sp|Q9LX65|VATH_ARATH	****	V-type proton ATPase subunit H	IPR004908 (ATPase, V1 complex, subunit H), IPR018506 (Cytochrome b5, heme-binding site)	GO:0000221 (vacuolar proton-transporting V-type ATPase, V1 domain), GO:0005488 (binding), GO:0005515 (protein binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0020037 (heme binding), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf20283g01007.1	AT1G15380.1	***-	Lactoylglutathione lyase / glyoxalase I family protein LENGTH=174	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf09028g00002.1	sp|Q9SE51|SURF1_ARATH	***-	Surfeit locus protein 1	IPR002994 (Surfeit locus 1/Shy1)	GO:0016020 (membrane)
Niben101Scf04539g04014.1	sp|P49043|VPE_CITSI	***-	Vacuolar-processing enzyme	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02638g02016.1	sp|Q885L1|PHS_PSESM	--**	Pterin-4-alpha-carbinolamine dehydratase	IPR001533 (Transcriptional coactivator/pterin dehydratase)	GO:0006729 (tetrahydrobiopterin biosynthetic process), GO:0008124 (4-alpha-hydroxytetrahydrobiopterin dehydratase activity)
Niben101Scf02011g03008.1	AT4G23895.1	***-	Pleckstrin homology (PH) domain-containing protein LENGTH=247	IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf02864g11041.1	sp|Q5N0G1|DNAJ_SYNP6	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf11724g04007.1	sp|Q2V3N5|FB211_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR006566 (FBD domain), IPR013101 (Leucine-rich repeat 2)	GO:0005515 (protein binding)
Niben101Scf10188g02005.1	sp|B0C3M8|THF1_ACAM1	***-	Protein Thf1	IPR017499 (Photosystem II Psp29, biogenesis)	GO:0009523 (photosystem II), GO:0010027 (thylakoid membrane organization), GO:0015979 (photosynthesis)
Niben101Scf04040g07019.1	gb|KEH37527.1|	***-	EEIG1/EHBP1 protein amino-terminal domain protein [Medicago truncatula]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf08591g00002.1	sp|Q7N3V2|MDTK_PHOLL	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf34389g00002.1	sp|Q2HJN6|EF1A3_OSCTI	****	Elongation factor 1-alpha 3	IPR004539 (Translation elongation factor EF1A, eukaryotic/archaeal), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005737 (cytoplasm), GO:0006414 (translational elongation)
Niben101Scf01586g00003.1	sp|Q93YV6|2A5I_ARATH	****	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf07579g04002.1	sp|P0DH90|FRIGI_ARATH	*-*-	Protein FRIGIDA	IPR012474 (Frigida-like)	
Niben101Scf05017g05017.1	AT2G39920.1	****	HAD superfamily, subfamily IIIB acid phosphatase LENGTH=283	IPR005519 (Acid phosphatase (Class B))	GO:0003993 (acid phosphatase activity)
Niben101Scf00747g02014.1	sp|Q9M2B4|ALFL3_ARATH	***-	PHD finger protein ALFIN-LIKE 3	IPR021998 (Alfin)	GO:0006355 (regulation of transcription, DNA-templated), GO:0042393 (histone binding)
Niben101Scf05867g00008.1	sp|Q8GX77|FB316_ARATH	***-	F-box protein		
Niben101Scf09560g01002.1	emb|CDY02362.1|	***-	BnaA09g25400D [Brassica napus]		
Niben101Scf03768g02005.1	AT5G24600.1	***-	Protein of unknown function, DUF599 LENGTH=248	IPR006747 (Protein of unknown function DUF599)	
Niben101Scf04077g03005.1	sp|Q2MIF0|RK16_SOLBU	*-*-	50S ribosomal protein L16, chloroplastic	IPR008543 (Uncharacterised protein family Ycf2), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005524 (ATP binding), GO:0005840 (ribosome), GO:0006412 (translation), GO:0009507 (chloroplast)
Niben101Scf03634g07010.1	sp|Q9WV06|ANKR2_MOUSE	*-*-	Ankyrin repeat domain-containing protein 2	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf01014g08004.1	gb|KEH22154.1|	*-*-	F-box/LRR protein [Medicago truncatula]		
Niben101Scf03913g01021.1	AT4G38410.1	***-	Dehydrin family protein LENGTH=163	IPR000167 (Dehydrin)	GO:0006950 (response to stress), GO:0009415 (response to water)
Niben101Scf00286g03002.1	sp|Q38825|IAA7_ARATH	*-*-	Auxin-responsive protein IAA7	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf24155g00012.1	AT5G38030.1	***-	MATE efflux family protein LENGTH=498	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03839g01002.1	sp|P44933|KEFX_HAEIN	*-*-	Glutathione-regulated potassium-efflux system protein	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02634g00007.1	sp|Q0ABJ8|ERPA_ALKEH	****	Iron-sulfur cluster insertion protein ErpA	IPR000361 (FeS cluster biogenesis), IPR016092 (FeS cluster insertion protein)	GO:0005198 (structural molecule activity), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf09345g00003.1	AT2G17890.1	****	calcium-dependent protein kinase 16 LENGTH=571	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00730g01016.1	sp|Q8RV04|TI141_ARATH	*-*-	Mitochondrial import inner membrane translocase subunit TIM14-1		
Niben101Scf03253g00003.1	ref|XP_003607374.1|	*-**	Dihydroflavonol-4-reductase [Medicago truncatula] gb|AES89571.1| cinnamyl-alcohol dehydrogenase-like protein [Medicago truncatula]	IPR016040 (NAD(P)-binding domain)	GO:0003854 (3-beta-hydroxy-delta5-steroid dehydrogenase activity), GO:0006694 (steroid biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf06158g00004.1			Unknown protein		
Niben101Scf06087g02002.1	sp|O65314|ACT_SCHDU	***-	Actin	IPR004000 (Actin family)	
Niben101Scf06822g04002.1	ref|NP_727593.3|	*-*-	mucin 11A, isoform A [Drosophila melanogaster] gb|AAF48140.5| mucin 11A, isoform A [Drosophila melanogaster]		
Niben101Scf01577g01002.1	sp|Q9XZE5|PP2AA_DICDI	***-	Serine/threonine-protein phosphatase 2A catalytic subunit A	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf01543g05011.1	AT3G54700.1	****	phosphate transporter 1;7 LENGTH=535	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03320g05001.1	AT5G06370.1	***-	NC domain-containing protein-related LENGTH=259	IPR000064 (Endopeptidase, NLPC/P60 domain), IPR007053 (LRAT-like domain)	
Niben101Scf03693g06012.1	sp|Q8S9D1|PP395_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04347g01036.1	sp|O60020|ASPR1_PHARH	--**	Aspartic protease	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02059g03004.1	emb|CAD41908.2|	*-*-	[Oryza sativa Japonica Group] emb|CAH68244.1| H0306F03.11 [Oryza sativa Indica Group]		
Niben101Scf01623g06031.1			Unknown protein		
Niben101Scf04841g00023.1	AT1G71050.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=152	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf03842g08002.1	sp|P26046|ACVS2_PENCH	--*-	N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase		
Niben101Scf12935g00040.1	AT2G33700.1	****	Protein phosphatase 2C family protein LENGTH=380	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf01576g01001.1	AT5G45560.1	*-**	Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein LENGTH=719	IPR002913 (START domain), IPR009769 (Domain of unknown function DUF1336), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf03419g01009.1	sp|Q6NKN9|BH074_ARATH	***-	Transcription factor bHLH74	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf06819g06002.1	AT3G63200.1	***-	PATATIN-like protein 9 LENGTH=384	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf00164g02008.1	sp|Q9ZW85|LEUD3_ARATH	***-	3-isopropylmalate dehydratase small subunit 3	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf06188g00001.1	sp|Q07060|ATP9_PETSP	*-**	ATP synthase subunit 9, mitochondrial	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf04044g19023.1	AT4G32620.2	*-*-	Enhancer of polycomb-like transcription factor protein LENGTH=1540	IPR019542 (Enhancer of polycomb-like, N-terminal)	
Niben101Scf01802g00002.1	emb|CAE01801.2|	***-	product [Oryza sativa Japonica Group]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf04943g01004.1	AT1G09160.2	*-*-	Protein phosphatase 2C family protein LENGTH=428		
Niben101Scf00878g02007.1	sp|Q63850|NUP62_MOUSE	*-**	Nuclear pore glycoprotein p62	IPR026010 (Nucleoporin NSP1/NUP62)	GO:0005643 (nuclear pore), GO:0017056 (structural constituent of nuclear pore)
Niben101Scf04418g13015.1	sp|Q0WRW8|B561K_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf17695g00001.1	ref|YP_009045741.1|	-**-	orf105a (mitochondrion) [Batis maritima] gb|AIC83344.1| orf105a (mitochondrion) [Batis maritima]		
Niben101Scf02452g01006.1	emb|CDY10879.1|	*-*-	BnaC01g14940D [Brassica napus]	IPR004314 (Domain of unknown function DUF239)	
Niben101Scf04114g02034.1	sp|Q3C1I8|CYF_NICSY	*-*-	Apocytochrome f	IPR002325 (Cytochrome f), IPR024094 (Cytochrome f large domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0015979 (photosynthesis), GO:0020037 (heme binding), GO:0031361 (integral component of thylakoid membrane)
Niben101Scf06678g00005.1	sp|Q7T322|NAA35_DANRE	***-	N-alpha-acetyltransferase 35, NatC auxiliary subunit	IPR007244 (NatC N(alpha)-terminal acetyltransferase, Mak10 subunit)	
Niben101Scf03076g02004.1	sp|B9DJH3|GCSH_STACT	****	Glycine cleavage system H protein	IPR002930 (Glycine cleavage system H-protein)	GO:0005960 (glycine cleavage complex), GO:0019464 (glycine decarboxylation via glycine cleavage system)
Niben101Scf01284g02011.1	sp|Q11180|WHT1_CAEEL	****	ABC transporter ATP-binding protein/permease wht-1	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf05912g02001.1	sp|Q12986|NFX1_HUMAN	***-	Transcriptional repressor NF-X1	IPR000967 (Zinc finger, NF-X1-type), IPR001841 (Zinc finger, RING-type), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR019787 (Zinc finger, PHD-finger)	GO:0000166 (nucleotide binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf05044g03002.1	sp|Q55E69|SYS1_DICDI	***-	Protein SYS1 homolog	IPR019185 (Integral membrane protein SYS1-related)	
Niben101Scf00309g02008.1			Unknown protein		
Niben101Scf00683g00010.1	sp|Q9SJ41|C3H18_ARATH	***-	Zinc finger CCCH domain-containing protein 18	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR025605 (OST-HTH/LOTUS domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf05269g04002.1	sp|Q8VYI9|NLTL5_ARATH	*-**	Non-specific lipid-transfer protein-like protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf34798g00014.1	sp|Q42608|PME_BRACM	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf18648g00002.1	AT2G21610.1	****	pectinesterase 11 LENGTH=352	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf05750g01016.1	gb|ACF19786.1|	*-**	NAC transcription factor [Nicotiana tabacum]	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00675g03010.1	sp|Q9C9X3|ANXD5_ARATH	***-	Annexin D5	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf07188g02013.1			Unknown protein		
Niben101Scf00682g04017.1	sp|Q9FFN0|GDL72_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00419g01009.1	sp|Q8LHP0|ELOF1_ORYSJ	***-	Transcription elongation factor 1 homolog	IPR007808 (Transcription elongation factor 1)	
Niben101Scf00341g09017.1	sp|Q8VYE2|TIM50_ARATH	****	Mitochondrial import inner membrane translocase subunit TIM50	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain), IPR027111 (Mitochondrial import inner membrane translocase subunit Tim50)	GO:0005515 (protein binding), GO:0005743 (mitochondrial inner membrane), GO:0005744 (mitochondrial inner membrane presequence translocase complex), GO:0015031 (protein transport)
Niben101Scf06509g00008.1	sp|Q9LVQ0|PME31_ARATH	****	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf17372g01008.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03300g05020.1	sp|Q51879|NIR_PHOLA	*-**	Ferredoxin--nitrite reductase	IPR005117 (Nitrite/Sulfite reductase ferredoxin-like domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03628g14004.1	gb|AIG02233.1|	***-	HAD family hydrolase [Pseudomonas fluorescens]	IPR023214 (HAD-like domain), IPR023468 (Riboflavin kinase)	
Niben101Scf12662g00011.1	sp|B3PW58|RL7_RHIE6	--*-	50S ribosomal protein L7/L12	IPR000206 (Ribosomal protein L7/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf13164g01002.1	emb|CDY66906.1|	*-*-	BnaC05g52250D [Brassica napus]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf01987g01029.1	sp|Q52KW0|SHAN2_XENLA	--*-	SH3 and multiple ankyrin repeat domains protein 2	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf00193g01009.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04392g01009.1	sp|Q9ZVI9|PECT1_ARATH	*-*-	Ethanolamine-phosphate cytidylyltransferase	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	
Niben101Scf00072g02005.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00407g01008.1			Unknown protein		
Niben101Scf03564g00017.1	sp|Q9XAR5|NUOL_STRCO	*-*-	NADH-quinone oxidoreductase subunit L	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf05845g02001.1	sp|Q2LVM4|TATA_SYNAS	--**	Sec-independent protein translocase protein TatA	IPR003369 (Sec-independent protein translocase protein TatA/B/E), IPR003998 (Twin-arginine translocation protein TatB-like)	GO:0005886 (plasma membrane), GO:0008565 (protein transporter activity), GO:0009306 (protein secretion), GO:0015031 (protein transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf01146g09015.1	sp|Q76CU2|PDR1_TOBAC	*-*-	Pleiotropic drug resistance protein 1		
Niben101Scf02732g00002.1	AT5G05690.1	***-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02074g04027.1	AT2G07739.1	***-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf09107g00007.1	sp|Q8L608|HPSE2_ARATH	***-	Heparanase-like protein 2	IPR005199 (Glycoside hydrolase, family 79)	GO:0016020 (membrane), GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf02746g02003.1	gb|KEH40409.1|	***-	leguminosin group486 secreted peptide [Medicago truncatula]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf09644g01003.1	ref|NP_001288856.1|	****	mitochondrial outer membrane protein porin 3-like [Brassica rapa] gb|AAS21632.1| voltage-dependent anion-selective channel protein [Brassica rapa]	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0006820 (anion transport), GO:0008308 (voltage-gated anion channel activity), GO:0044070 (regulation of anion transport), GO:0055085 (transmembrane transport)
Niben101Scf01586g00004.1	AT4G13050.1	***-	Acyl-ACP thioesterase LENGTH=367	IPR002864 (Acyl-ACP thioesterase), IPR021113 (Acyl-ACP-thioesterase, N-terminal), IPR029069 (HotDog domain)	GO:0006633 (fatty acid biosynthetic process), GO:0016790 (thiolester hydrolase activity)
Niben101Scf02145g10005.1	sp|Q9K934|GCST_BACHD	****	Aminomethyltransferase	IPR006223 (Glycine cleavage system T protein), IPR027266 (GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1), IPR029043 (Glycine cleavage T-protein/YgfZ, C-terminal domain)	GO:0004047 (aminomethyltransferase activity), GO:0005515 (protein binding), GO:0006546 (glycine catabolic process)
Niben101Scf10575g00011.1	sp|B0JHI7|CCS1_MICAN	***-	Cytochrome c biogenesis protein CcsB	IPR007816 (ResB-like domain)	
Niben101Scf00088g01010.1	sp|P46301|RS25_SOLLC	***-	40S ribosomal protein S25	IPR004977 (Ribosomal protein S25)	
Niben101Scf03766g00008.1	sp|Q824L3|PYRE_CHLCV	*-**	Orotate phosphoribosyltransferase	IPR013785 (Aldolase-type TIM barrel), IPR014732 (Orotidine 5'-phosphate decarboxylase), IPR023031 (Orotate phosphoribosyltransferase), IPR029057 (Phosphoribosyltransferase-like)	GO:0003824 (catalytic activity), GO:0004588 (orotate phosphoribosyltransferase activity), GO:0004590 (orotidine-5'-phosphate decarboxylase activity), GO:0006207 ('de novo' pyrimidine nucleobase biosynthetic process), GO:0006221 (pyrimidine nucleotide biosynthetic process), GO:0008152 (metabolic process), GO:0009116 (nucleoside metabolic process), GO:0044205 ('de novo' UMP biosynthetic process)
Niben101Scf04653g01008.1			Unknown protein		
Niben101Scf01037g02004.1	sp|Q8RW96|2A5G_ARATH	****	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf16197g02005.1			Unknown protein		
Niben101Scf03858g00021.1			Unknown protein		
Niben101Scf01166g11014.1			Unknown protein		
Niben101Scf04574g05006.1	AT5G14520.1	***-	pescadillo-related LENGTH=590	IPR001357 (BRCT domain), IPR010613 (Pescadillo)	GO:0005730 (nucleolus), GO:0042254 (ribosome biogenesis)
Niben101Scf00505g04013.1	AT1G77110.1	***-	Auxin efflux carrier family protein LENGTH=570	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf15476g01024.1	gb|AAT39283.2|	***-	Late blight resistance protein, putative [Solanum demissum]		
Niben101Scf02658g03022.1	AT5G02880.1	*-**	ubiquitin-protein ligase 4 LENGTH=1502	IPR000569 (HECT), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding)
Niben101Scf03805g00012.1	sp|Q9SKZ1|PUR_ARATH	***-	Transcription factor Pur-alpha 1	IPR006628 (PUR-alpha/beta/gamma, DNA/RNA-binding)	
Niben101Scf04436g11006.1	emb|CDY05674.1|	***-	BnaC02g38630D [Brassica napus]	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf01611g04026.1	sp|Q8RXH2|NUP85_ARATH	***-	Nuclear pore complex protein NUP85	IPR011502 (Nucleoporin Nup85-like)	
Niben101Scf00254g05006.1	sp|Q9SW80|BLH2_ARATH	*-*-	BEL1-like homeodomain protein 2	IPR006563 (POX domain)	
Niben101Scf06528g04015.1	gb|KEH19175.1|	*-*-	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf03506g02002.1	gb|AAY43976.1|	***-	glycine rich protein-interacting protein [Nicotiana tabacum]		
Niben101Scf05776g00007.1			Unknown protein		
Niben101Scf05955g00012.1	gb|KEH16237.1|	***-	B3 domain plant protein, putative [Medicago truncatula]	IPR015300 (DNA-binding pseudobarrel domain)	
Niben101Scf04292g00003.1	AT1G48480.1	*-**	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00073g06018.1			Unknown protein		
Niben101Scf08991g00007.1	sp|Q948T6|LGUL_ORYSJ	****	Lactoylglutathione lyase	IPR004361 (Glyoxalase I), IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	GO:0004462 (lactoylglutathione lyase activity), GO:0046872 (metal ion binding)
Niben101Scf00863g00008.1			Unknown protein		
Niben101Scf01205g02008.1	sp|Q8W4G6|CRK15_ARATH	*-**	Cysteine-rich receptor-like protein kinase 15	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06902g01006.1	sp|Q7XJE6|MCA1_ARATH	*-*-	Metacaspase-1	IPR005735 (Zinc finger, LSD1-type), IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03965g03001.1	ref|WP_017312960.1|	*-*-	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 [Fischerella sp. PCC 9339]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf00152g18004.1	gb|ABU50826.1|	*-*-	GAGA-binding transcriptional activator [Arabidopsis arenosa]	IPR010409 (GAGA-binding transcriptional activator)	
Niben101Scf02294g04013.1	ref|XP_003608391.1|	*-*-	Protein EXECUTER [Medicago truncatula]		
Niben101Scf04361g00006.1	sp|Q28H21|PCGF1_XENTR	*-*-	Polycomb group RING finger protein 1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf11253g03001.1	sp|Q75M35|OML3_ORYSJ	***-	Protein MEI2-like 3	IPR007201 (RNA recognition motif 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01184g05006.1	sp|Q9SI78|PPR93_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05977g01004.1	AT4G22860.1	****	Cell cycle regulated microtubule associated protein LENGTH=509	IPR009675 (TPX2), IPR027330 (TPX2 central domain)	GO:0005819 (spindle), GO:0005874 (microtubule), GO:0007067 (mitotic nuclear division)
Niben101Scf01085g03005.1	sp|P35129|UBC2_CAEEL	***-	Ubiquitin-conjugating enzyme E2 2	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf02060g00010.1	sp|Q9XJ60|MAD50_ORYSJ	--*-	MADS-box transcription factor 50	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf10369g01019.1	AT3G22790.1	*-*-	Kinase interacting (KIP1-like) family protein LENGTH=1728		
Niben101Scf04015g02020.1	sp|O48923|C71DA_SOYBN	*-*-	Cytochrome P450 71D10	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09061g00008.1	sp|A9ZPJ6|AGCT1_HORVU	*-*-	Agmatine coumaroyltransferase-1	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00861g00001.1	ref|XP_003588355.1|	*-*-	Mitochondrial protein, putative [Medicago truncatula]		
Niben101Scf06916g01017.1			Unknown protein		
Niben101Scf05063g04004.1	emb|CDR27406.1|	***-	cupin [Staphylococcus aureus]	IPR009327 (Protein of unknown function DUF985)	
Niben101Scf05186g00001.1	gb|ACF19786.1|	*-**	NAC transcription factor [Nicotiana tabacum]	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf39487g00004.1	AT1G63000.1	***-	nucleotide-rhamnose synthase/epimerase-reductase LENGTH=301	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf01350g05009.1	emb|CBM56257.1|	*-*-	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	
Niben101Scf04676g01005.1	ref|XP_002535856.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06757g00019.1	sp|Q9LYT1|PAO3_ARATH	***-	Polyamine oxidase 3	IPR002937 (Amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07650g02007.1	sp|O60293|ZC3H1_HUMAN	--*-	Zinc finger C3H1 domain-containing protein	IPR011990 (Tetratricopeptide-like helical domain), IPR019607 (Putative zinc-finger domain)	GO:0005515 (protein binding)
Niben101Scf14311g00001.1	ref|XP_002519516.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF42930.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11383g00017.1	AT5G28040.1	***-	DNA-binding storekeeper protein-related transcriptional regulator LENGTH=427	IPR007592 (Protein of unknown function DUF573)	
Niben101Scf02638g03001.1	sp|O14737|PDCD5_HUMAN	-**-	Programmed cell death protein 5	IPR002836 (PDCD5-related protein)	GO:0003677 (DNA binding)
Niben101Scf20037g01002.1	gb|AFL90612.2|	*-*-	coat protein [Blueberry red ringspot virus]		
Niben101Scf10428g00006.1	sp|Q7SXW3|LRC40_DANRE	*-*-	Leucine-rich repeat-containing protein 40	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf05956g01016.1	sp|Q0VCY1|VAPA_BOVIN	*-**	Vesicle-associated membrane protein-associated protein A	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf01219g06027.1	AT3G23530.1	***-	Cyclopropane-fatty-acyl-phospholipid synthase LENGTH=867	IPR003333 (Mycolic acid cyclopropane synthase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008610 (lipid biosynthetic process)
Niben101Scf01240g10023.1	sp|O22348|TBA2_ELEIN	***-	Tubulin alpha-2 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf10026g01008.1	AT5G57440.1	****	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=240	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf38796g00002.1	sp|Q96293|ACT8_ARATH	*-*-	Actin-8	IPR004000 (Actin family)	
Niben101Scf03990g02013.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR004332 (Transposase, MuDR, plant), IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf01827g01001.1	AT3G43930.1	***-	BRCT domain-containing DNA repair protein LENGTH=502	IPR001357 (BRCT domain)	
Niben101Scf05230g03009.1	AT5G14470.1	****	GHMP kinase family protein LENGTH=366	IPR006206 (Mevalonate/galactokinase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00391g04010.1	sp|Q39649|2SS_CUCMA	*-*-	2S albumin	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf03733g03018.1	sp|Q9S7N7|PSAG_ARATH	****	Photosystem I reaction center subunit V, chloroplastic	IPR000549 (Photosystem I PsaG/PsaK protein), IPR023618 (Photosystem I PsaG/PsaK domain)	GO:0009522 (photosystem I), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0016168 (chlorophyll binding)
Niben101Scf01227g04012.1	AT2G39980.1	***-	HXXXD-type acyl-transferase family protein LENGTH=482	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	
Niben101Scf05565g00002.1	sp|Q84MA2|IP5P1_ARATH	*-**	Type I inositol 1,4,5-trisphosphate 5-phosphatase 1	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf05782g00004.1	sp|Q4PSI6|FBD13_ARATH	--*-	FBD-associated F-box protein		
Niben101Scf00626g00004.1	sp|Q3SWY6|STK25_BOVIN	*-**	Serine/threonine-protein kinase 25	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02322g06001.1	sp|Q8VZB2|PAS2_ARATH	--*-	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2		
Niben101Scf15815g00003.1	sp|Q99M63|SMU1_RAT	--*-	WD40 repeat-containing protein SMU1		
Niben101Scf01326g08016.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02873g02007.1	sp|P34120|PSA7_DICDI	****	Proteasome subunit alpha type-7	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf01511g02025.1			Unknown protein		
Niben101Scf05846g00007.1			Unknown protein		
Niben101Scf06189g01001.1	emb|CDX80332.1|	*-*-	BnaC09g34100D [Brassica napus]	IPR021584 (Thylakoid soluble phosphoprotein TSP9)	
Niben101Scf08637g00009.1	sp|Q40161|GP1_SOLLC	***-	Polygalacturonase-1 non-catalytic subunit beta		
Niben101Scf12735g00001.1	gb|AES92081.2|	*-*-	DNA-directed RNA polymerase [Medicago truncatula]		
Niben101Scf01866g01009.1	sp|Q9ASZ8|PPR37_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07244g01003.1			Unknown protein		
Niben101Scf10210g00001.1	sp|Q7XJE6|MCA1_ARATH	--*-	Metacaspase-1		
Niben101Scf07326g00016.1	ref|XP_003626920.1|	-***	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00437g00017.1	sp|Q8GYX3|MP705_ARATH	****	Microtubule-associated protein 70-5	IPR009768 (Microtubule-associated protein 70)	GO:0007010 (cytoskeleton organization), GO:0008017 (microtubule binding)
Niben101Scf09071g01004.1			Unknown protein		
Niben101Scf32522g00006.1	sp|Q9H0Z9|RBM38_HUMAN	*-**	RNA-binding protein 38	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04020g00006.1	sp|Q499N5|ACSF2_RAT	***-	Acyl-CoA synthetase family member 2, mitochondrial	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf39126g00010.1	sp|Q84TE6|NAC22_ARATH	*-*-	NAC domain-containing protein 21/22	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08304g05007.1			Unknown protein		
Niben101Scf06772g01015.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf02025g00001.1	sp|Q9QXV3|ING1_MOUSE	--*-	Inhibitor of growth protein 1		
Niben101Scf02869g17007.1			Unknown protein		
Niben101Scf20669g00001.1	AT5G58100.1	***-	unknown protein; INVOLVED IN: pollen exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=945		
Niben101Scf11291g01001.1	gb|ADL36962.1|	*-*-	At1g62390-like protein [Arabidopsis lyrata subsp. lyrata]	IPR000270 (Phox/Bem1p), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01764g03022.1	AT5G62790.2	****	1-deoxy-D-xylulose 5-phosphate reductoisomerase LENGTH=497	IPR003821 (1-deoxy-D-xylulose 5-phosphate reductoisomerase), IPR016040 (NAD(P)-binding domain), IPR026877 (DXP reductoisomerase C-terminal domain)	GO:0005515 (protein binding), GO:0008299 (isoprenoid biosynthetic process), GO:0030604 (1-deoxy-D-xylulose-5-phosphate reductoisomerase activity), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process), GO:0070402 (NADPH binding)
Niben101Scf07515g01011.1	sp|Q2AAF6|GMT_PICPA	-**-	GDP-mannose transporter	IPR004853 (Triose-phosphate transporter domain), IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf09658g00033.1	ref|WP_026735795.1|	--*-	molecular chaperone DnaJ [Fischerella sp. PCC 9605]	IPR021788 (Protein of unknown function DUF3353)	
Niben101Scf01063g03005.1	AT2G26150.1	*-**	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03213g01009.1	sp|A7TJK8|PRP5_VANPO	--*-	Pre-mRNA-processing ATP-dependent RNA helicase PRP5		
Niben101Scf09234g01003.1	sp|Q8T135|KIF5_DICDI	*-**	Kinesin-related protein 5	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf01634g04003.1	AT5G03960.1	***-	IQ-domain 12 LENGTH=403	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf06578g00014.1	AT4G19110.2	****	Protein kinase superfamily protein LENGTH=464	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf20768g00035.1	AT1G21360.1	****	glycolipid transfer protein 2 LENGTH=223	IPR014830 (Glycolipid transfer protein domain)	GO:0005737 (cytoplasm), GO:0017089 (glycolipid transporter activity), GO:0046836 (glycolipid transport), GO:0051861 (glycolipid binding)
Niben101Scf00055g03005.1	ref|WP_014351734.1|	*-**	methyl transferase [Nocardia cyriacigeorgica] ref|YP_005264914.1| putative methyl transferase [Nocardia cyriacigeorgica GUH-2] emb|CCF64278.1| putative methyl transferase [Nocardia cyriacigeorgica GUH-2]	IPR007213 (Leucine carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf05649g01011.1	sp|Q9M7R0|ALL8_OLEEU	****	Calcium-binding allergen Ole e 8	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00453g01015.1	AT5G04160.1	***-	Nucleotide-sugar transporter family protein LENGTH=309	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf14591g00002.1	sp|P29341|PABP1_MOUSE	*-**	Polyadenylate-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf10997g03006.1	sp|O23474|PER40_ARATH	*-**	Peroxidase 40	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03294g01008.1	AT2G42250.1	*-*-	cytochrome P450, family 712, subfamily A, polypeptide 1 LENGTH=514	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10877g00004.1	sp|Q69NK8|C3H59_ORYSJ	***-	Zinc finger CCCH domain-containing protein 59	IPR000571 (Zinc finger, CCCH-type), IPR006767 (Cwf19-like protein, C-terminal domain-2), IPR011146 (HIT-like domain)	GO:0003824 (catalytic activity), GO:0046872 (metal ion binding)
Niben101Scf06117g02003.1	emb|CDY35987.1|	--*-	BnaA05g29630D [Brassica napus]	IPR010605 (Protein of unknown function DUF1191)	
Niben101Scf00247g01003.1	sp|P33487|ABP1_ARATH	***-	Auxin-binding protein 1	IPR000526 (Auxin-binding protein)	GO:0004872 (receptor activity), GO:0005788 (endoplasmic reticulum lumen)
Niben101Scf07462g00005.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01338g00002.1	AT3G25700.1	***-	Eukaryotic aspartyl protease family protein LENGTH=452	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04899g05008.1	AT5G58950.1	****	Protein kinase superfamily protein LENGTH=525	IPR011009 (Protein kinase-like domain), IPR015783 (Serine/threonine-protein kinase HT1, plant)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg06858g00001.1	AT5G16250.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=183		
Niben101Scf05368g06016.1	sp|Q84KJ6|AMT31_ORYSJ	****	Ammonium transporter 3 member 1	IPR001905 (Ammonium transporter), IPR002229 (Blood group Rhesus C/E/D polypeptide), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf01409g04013.1	AT5G57630.1	****	CBL-interacting protein kinase 21 LENGTH=416	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06187g01021.1	emb|CDY15385.1|	***-	BnaC04g42380D [Brassica napus]		
Niben101Scf08242g00003.1	sp|P01122|RHO_APLCA	****	Ras-like GTP-binding protein RHO	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02429g05007.1			Unknown protein		
Niben101Scf08665g02013.1	gb|EWG38178.1|	***-	pre-mRNA-splicing factor prp46 [Fusarium verticillioides 7600]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf00799g06005.1	sp|Q38967|AAP2_ARATH	***-	Amino acid permease 2	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf01205g00003.1	ref|WP_026732158.1|	*-*-	molecular chaperone DnaJ [Fischerella sp. PCC 9605]	IPR001623 (DnaJ domain), IPR025344 (Domain of unknown function DUF4101)	
Niben101Scf01521g16002.1	AT1G69780.1	***-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08682g01003.1	sp|Q9LUV4|FRL4A_ARATH	***-	FRIGIDA-like protein 4a	IPR012474 (Frigida-like)	
Niben101Scf03503g01004.1	AT1G20300.1	*-*-	Pentatricopeptide repeat (PPR) superfamily protein LENGTH=537		
Niben101Scf23241g00002.1	sp|Q9LY32|PMA7_ARATH	*-**	ATPase 7, plasma membrane-type	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf02849g07003.1			Unknown protein		
Niben101Scf06493g00022.1	sp|Q9SRU2|BIG_ARATH	***-	Auxin transport protein BIG	IPR000433 (Zinc finger, ZZ-type), IPR003126 (Zinc finger, N-recognin)	GO:0008270 (zinc ion binding)
Niben101Scf00271g05013.1	ref|XP_007022985.1|	***-	Hydroxyproline-rich glycoprotein family protein isoform 2 [Theobroma cacao] gb|EOY25607.1| Hydroxyproline-rich glycoprotein family protein isoform 2 [Theobroma cacao]		
Niben101Scf01150g07002.1			Unknown protein		
Niben101Scf05118g01014.1	sp|Q6DW73|DGDG2_LOTJA	***-	Digalactosyldiacylglycerol synthase 2, chloroplastic		
Niben101Scf05761g01024.1	sp|Q9SCZ4|FERON_ARATH	*-*-	Receptor-like protein kinase FERONIA	IPR024788 (Malectin-like carbohydrate-binding domain)	
Niben101Scf24963g00011.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03670g00004.1	ref|XP_002527373.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF35045.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03390g13004.1	AT2G23945.1	***-	Eukaryotic aspartyl protease family protein LENGTH=458	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Ctg14302g00002.1	AT4G18905.2	*-*-	Transducin/WD40 repeat-like superfamily protein LENGTH=504	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03370g05004.1	sp|Q5LNV2|FOLD1_RUEPO	***-	Bifunctional protein FolD 1/3	IPR000672 (Tetrahydrofolate dehydrogenase/cyclohydrolase)	GO:0003824 (catalytic activity), GO:0004488 (methylenetetrahydrofolate dehydrogenase (NADP+) activity), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf13227g00028.1	emb|CDX86254.1|	*-*-	BnaA06g29710D [Brassica napus]		
Niben101Scf00189g06007.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00749g04009.1	AT3G58480.1	***-	calmodulin-binding family protein LENGTH=575		
Niben101Scf08035g00009.1	AT5G37770.1	****	EF hand calcium-binding protein family LENGTH=161	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03781g01004.1			Unknown protein		
Niben101Scf00854g08058.1	ref|YP_009045802.1|	***-	orf101b (mitochondrion) [Batis maritima] gb|AIC83405.1| orf101b (mitochondrion) [Batis maritima]		
Niben101Scf00321g03009.1	AT5G66600.4	***-	Protein of unknown function, DUF547 LENGTH=629	IPR006869 (Domain of unknown function DUF547), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	
Niben101Scf00887g02002.1	gb|ADV29607.1|	***-	At5g37260-like protein [Solanum arcanum]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01061g06001.1	AT1G30760.1	*-**	FAD-binding Berberine family protein LENGTH=534	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09559g02008.1	AT1G26480.1	***-	general regulatory factor 12 LENGTH=268	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf00712g09003.1	sp|P39772|SYN_BACSU	*-**	Asparagine--tRNA ligase	IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004815 (aspartate-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006422 (aspartyl-tRNA aminoacylation)
Niben101Scf01001g07029.1	gb|AAM18178.1|	*-*-	anther protein [Nicotiana tabacum]		
Niben101Scf02706g00013.1	sp|Q9XFM6|MSBP1_ARATH	****	Membrane steroid-binding protein 1	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf08274g00006.1			Unknown protein		
Niben101Scf00650g04005.1	gb|AAF76312.1|AF220603_4	*-*-	Prf [Solanum lycopersicum]		
Niben101Scf02413g00007.1	sp|Q39261|ZFP2_ARATH	***-	Zinc finger protein 2	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf08698g02019.1	sp|Q8L7F9|B3GTF_ARATH	****	Beta-1,3-galactosyltransferase 15	IPR002659 (Glycosyl transferase, family 31), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane), GO:0030246 (carbohydrate binding)
Niben101Scf04894g00020.1	ref|NP_001044369.2|	*-*-	product [Oryza sativa Japonica Group] dbj|BAF06283.2| [Oryza sativa Japonica Group]		
Niben101Scf01691g00016.1	AT5G45690.1	*-*-	Protein of unknown function (DUF1264) LENGTH=247	IPR010686 (Protein of unknown function DUF1264)	
Niben101Scf11355g01023.1	AT1G13220.2	***-	nuclear matrix constituent protein-related LENGTH=1128		
Niben101Scf05732g03012.1	AT5G24690.1	***-	Protein of unknown function (DUF3411) LENGTH=521	IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf07343g01011.1	sp|Q9SZG0|HHP4_ARATH	***-	Heptahelical transmembrane protein 4	IPR004254 (AdipoR/Haemolysin-III-related)	GO:0016021 (integral component of membrane)
Niben101Scf04473g01004.1	sp|B7E321|DRB5_ORYSJ	*-*-	Double-stranded RNA-binding protein 5	IPR014720 (Double-stranded RNA-binding domain)	
Niben101Scf06050g00002.1	ref|XP_003626920.1|	****	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00669g00006.1	AT2G37400.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=333	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf09862g02004.1	sp|Q9FGF0|PGML1_ARATH	***-	Phosphoglycerate mutase-like protein 1	IPR001345 (Phosphoglycerate/bisphosphoglycerate mutase, active site), IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf02459g07003.1	sp|B9M861|DNLJ_GEODF	--*-	DNA ligase	IPR010994 (RuvA domain 2-like)	
Niben101Scf22590g00002.1	AT5G49890.1	****	chloride channel C LENGTH=779	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00248g02007.1	sp|Q8R146|APEH_MOUSE	***-	Acylamino-acid-releasing enzyme	IPR011042 (Six-bladed beta-propeller, TolB-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf03302g00009.1			Unknown protein		
Niben101Scf01943g04009.1	sp|P55857|SUMO1_ORYSJ	***-	Small ubiquitin-related modifier 1	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf05467g04005.1	sp|F4IWA8|TBL41_ARATH	*-*-	Protein trichome birefringence-like 41	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf11653g01011.1	gb|ACG45151.1|	***-	fiber protein Fb11 [Zea mays]		
Niben101Scf02433g04002.1	gb|ABD32666.1|	***-	conserved hypothetical protein [Medicago truncatula] gb|AES64401.2| hypothetical protein [Medicago truncatula]		
Niben101Scf01025g07022.1	emb|CDX80815.1|	*-*-	BnaC03g00690D [Brassica napus]		
Niben101Scf00063g04014.1	sp|A2Y4B6|CDKD1_ORYSI	*-**	Cyclin-dependent kinase D-1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02982g01023.1	sp|Q9LCQ4|DNAJ_BRECH	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf00582g01035.1	sp|P16866|H2A4_VOLCA	***-	Histone H2A-IV	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf03720g00009.1	gb|ABF95572.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf08767g00001.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04832g02001.1	AT5G12220.1	***-	las1-like family protein LENGTH=611	IPR007174 (Las1-like)	
Niben101Scf02668g01013.1	AT5G13460.1	***-	IQ-domain 11 LENGTH=443	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf00202g02008.1	AT4G39210.1	****	Glucose-1-phosphate adenylyltransferase family protein LENGTH=521	IPR011004 (Trimeric LpxA-like), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005978 (glycogen biosynthetic process), GO:0008878 (glucose-1-phosphate adenylyltransferase activity), GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf00132g02003.1	sp|Q9XED8|ARFI_ARATH	****	Auxin response factor 9	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf01252g03001.1	AT1G78020.1	***-	Protein of unknown function (DUF581) LENGTH=162	IPR007650 (Zf-FLZ domain)	
Niben101Scf03154g02001.1	sp|Q9LFS8|SMC5_ARATH	***-	Structural maintenance of chromosomes protein 5	IPR027131 (Structural maintenance of chromosomes protein 5), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000724 (double-strand break repair via homologous recombination), GO:0006281 (DNA repair), GO:0030915 (Smc5-Smc6 complex)
Niben101Scf03724g01001.1			Unknown protein		
Niben101Scf05043g02001.1	sp|Q86TV6|TTC7B_HUMAN	***-	Tetratricopeptide repeat protein 7B	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02286g00013.1	sp|Q94K00|TBL28_ARATH	***-	Protein trichome birefringence-like 28	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	GO:0050826 (response to freezing)
Niben101Scf03169g02005.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07639g06006.1	sp|Q2NKV8|GOT1A_BOVIN	****	Vesicle transport protein GOT1A	IPR007305 (Vesicle transport protein, Got1/SFT2-like)	GO:0016192 (vesicle-mediated transport)
Niben101Scf03006g05001.1	sp|Q9FLP0|MA651_ARATH	****	65-kDa microtubule-associated protein 1	IPR007145 (Microtubule-associated protein, MAP65/Ase1/PRC1)	GO:0000226 (microtubule cytoskeleton organization), GO:0000910 (cytokinesis), GO:0008017 (microtubule binding)
Niben101Scf03857g04004.1			Unknown protein		
Niben101Scf04103g04003.1			Unknown protein		
Niben101Scf02023g00005.1	sp|Q8K2L8|TPC12_MOUSE	*-*-	Trafficking protein particle complex subunit 12	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06424g01008.1	gb|KEH25542.1|	-**-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf04185g04010.1	emb|CDX74689.1|	*-*-	BnaA05g04350D [Brassica napus]	IPR027973 (Protein of unknown function DUF4602)	
Niben101Scf10440g00026.1	gb|AAF09256.1|AF202179_1	--*-	disease resistance protein BS2 [Capsicum chacoense]		
Niben101Scf00638g00006.1	AT5G20190.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=290	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04995g04005.1	AT1G46264.1	****	heat shock transcription factor B4 LENGTH=348	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06772g01013.1	AT4G08480.1	*-**	mitogen-activated protein kinase kinase kinase 9 LENGTH=773	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11724g04004.1	emb|CDY53040.1|	--*-	BnaC03g73890D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf18129g01003.1	sp|Q0P5I6|PR38A_BOVIN	*-*-	Pre-mRNA-splicing factor 38A	IPR005037 (Pre-mRNA-splicing factor 38), IPR024767 (Pre-mRNA-splicing factor 38, C-terminal)	
Niben101Scf01943g09007.1	sp|A7SLC8|NAT9_NEMVE	****	N-acetyltransferase 9-like protein	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf05250g01007.1	ref|NP_191672.1|	****	alpha-1,4-galacturon [Arabidopsis thaliana] emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gb|AHL38722.1| glycosyltransferase, partial [Arabidopsis thaliana]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf07673g01012.1	ref|WP_024673372.1|	****	NADP-dependent oxidoreductase [Pseudomonas syringae]	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03088g01003.1	sp|Q71V09|H4_CAPAN	***-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly), GO:0046982 (protein heterodimerization activity)
Niben101Scf10968g01003.1	tpg|DAA53176.1|	*-*-	TPA: triacylglycerol lipase [Zea mays]		
Niben101Scf00395g02015.1	ref|NP_001053782.1|	-**-	[Oryza sativa Japonica Group] emb|CAE01828.2| OSJNBa0041A02.21 [Oryza sativa Japonica Group] dbj|BAF15696.1| [Oryza sativa Japonica Group] emb|CAH66713.1| OSIGBa0118P15.3 [Oryza sativa Indica Group]		
Niben101Scf09512g04024.1	AT1G01510.1	****	NAD(P)-binding Rossmann-fold superfamily protein LENGTH=636	IPR016040 (NAD(P)-binding domain)	GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02203g04009.1	AT2G33620.1	*-*-	AT hook motif DNA-binding family protein LENGTH=351	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf03488g06005.1	gb|ACZ64220.1|	*-*-	RPM1 interacting protein 4 transcript 2 [Lactuca saligna]	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf00730g01013.1	sp|Q9SF32|IQD1_ARATH	***-	Protein IQ-DOMAIN 1	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Ctg15956g00002.1	ref|XP_003588558.1|	--*-	BURP domain protein [Medicago truncatula]	IPR024489 (Organ specific protein)	
Niben101Scf03526g01002.1	sp|Q8NJ52|NTF2_DAVTA	--**	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf07000g01010.1	ref|XP_002513164.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF49155.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00944g01001.1	AT5G44440.1	****	FAD-binding Berberine family protein LENGTH=533	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00756g01014.1	AT4G21490.1	***-	NAD(P)H dehydrogenase B3 LENGTH=580	IPR011992 (EF-hand domain pair), IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0005509 (calcium ion binding), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09782g00001.1	sp|Q9NW13|RBM28_HUMAN	*-**	RNA-binding protein 28	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04785g01004.1	sp|Q4V8X0|TPRA1_DANRE	-**-	Transmembrane protein adipocyte-associated 1 homolog	IPR018781 (Transmembrane protein adipocyte-associated 1)	
Niben101Scf00612g01004.1	AT3G24020.1	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=243	IPR004265 (Plant disease resistance response protein)	
Niben101Scf08918g00008.1	AT1G56423.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=270		
Niben101Scf01313g05003.1	emb|CDX92667.1|	*-*-	BnaC07g39250D [Brassica napus]		
Niben101Scf01957g00005.1	AT4G00750.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=633	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf00160g06029.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04437g01001.1	AT1G24340.1	****	FAD/NAD(P)-binding oxidoreductase family protein LENGTH=709	IPR003042 (Aromatic-ring hydroxylase-like)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf08447g03012.1	AT3G07330.1	***-	Cellulose-synthase-like C6 LENGTH=682	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf07709g01011.1	sp|P0DI65|CSPLL_MAIZE	***-	CASP-like protein 16	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf07488g00030.1	sp|Q8H5X5|SCAM1_ORYSJ	****	Secretory carrier-associated membrane protein 1	IPR007273 (SCAMP)	GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf03021g03028.1	sp|Q8RWS6|FRO6_ARATH	*-**	Ferric reduction oxidase 6	IPR013121 (Ferric reductase, NAD binding), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017927 (Ferredoxin reductase-type FAD-binding domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf12011g00012.1	AT4G35420.1	*-*-	dihydroflavonol 4-reductase-like1 LENGTH=326	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf00142g01012.1			Unknown protein		
Niben101Scf01426g04008.1	gb|ABA96330.1|	*-*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf03790g02001.1	AT3G02645.1	*-*-	Plant protein of unknown function (DUF247) LENGTH=529	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf01661g02023.1	gb|ACR43921.1|	***-	MIS12-2 [Zea mays]	IPR008685 (Centromere protein Mis12)	GO:0000775 (chromosome, centromeric region), GO:0005634 (nucleus), GO:0007049 (cell cycle), GO:0007067 (mitotic nuclear division)
Niben101Scf03389g00030.1	ref|NP_175492.1|	*-*-	Aminotransferase-like, plant mobile domain family protein [Arabidopsis thaliana] hypothetical protein [Arabidopsis thaliana] gb|AEE32589.1| Aminotransferase-like, plant mobile domain family protein [Arabidopsis thaliana]	IPR006904 (Protein of unknown function DUF716 (TMEM45))	
Niben101Scf18196g00001.1			Unknown protein		
Niben101Scf00398g07002.1	ref|NP_974333.1|	****	sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gb|AEE76089.1| sequence-specific DNA binding transcription factor [Arabidopsis thaliana]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf00247g03007.1	sp|P25469|H2A1_SOLLC	*-*-	Histone H2A.1	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf00742g00006.1	sp|Q9NXS3|KLH28_HUMAN	*-*-	Kelch-like protein 28	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf08984g00009.1			Unknown protein		
Niben101Scf00096g02003.1	sp|Q7F8R0|C3H14_ORYSJ	***-	Zinc finger CCCH domain-containing protein 14	IPR000571 (Zinc finger, CCCH-type), IPR004087 (K Homology domain), IPR013563 (Oligopeptide/dipeptide ABC transporter, C-terminal)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005524 (ATP binding), GO:0015833 (peptide transport), GO:0046872 (metal ion binding)
Niben101Scf06432g03003.1	AT4G02930.1	*-**	GTP binding Elongation factor Tu family protein LENGTH=454	IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf04915g01001.1	gb|KEH18174.1|	*-*-	vacuolar iron transporter-like protein [Medicago truncatula]	IPR008217 (Ccc1 family)	
Niben101Scf03191g01012.1	gb|AAX95233.1|	--*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf04932g00005.1	sp|A2AUC9|KLH41_MOUSE	*-*-	Kelch-like protein 41	IPR001810 (F-box domain), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf05795g02005.1	AT5G47750.1	*-**	D6 protein kinase like 2 LENGTH=586	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02104g00002.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf03735g06010.1	gb|ADV59373.1|	***-	GAGA-binding transcriptional activator [Triphysaria pusilla]	IPR010409 (GAGA-binding transcriptional activator)	
Niben101Scf11009g00019.1	sp|O04450|TCPE_ARATH	*-*-	T-complex protein 1 subunit epsilon	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process)
Niben101Scf07516g03004.1	sp|Q8VZB9|R10A1_ARATH	****	60S ribosomal protein L10a-1	IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf11608g01013.1	AT3G07160.1	*-*-	glucan synthase-like 10 LENGTH=1890	IPR026899 (1,3-beta-glucan synthase subunit FKS1-like, domain-1)	
Niben101Scf09234g02012.1	AT3G02030.1	****	transferases, transferring acyl groups other than amino-acyl groups;acyltransferases LENGTH=662	IPR007130 (Diacylglycerol acyltransferase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00087g09002.1	AT5G10720.1	****	histidine kinase 5 LENGTH=922	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01212g03007.1	sp|Q9LNB9|LBD2_ARATH	*-*-	LOB domain-containing protein 2	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf00369g04005.1	sp|Q9SXD8|PPR90_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08001g02018.1	AT3G19610.1	*-*-	Plant protein of unknown function (DUF936) LENGTH=640	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Scf03238g01002.1	AT4G29460.1	****	Phospholipase A2 family protein LENGTH=187	IPR016090 (Phospholipase A2 domain)	GO:0004623 (phospholipase A2 activity), GO:0006644 (phospholipid metabolic process), GO:0016042 (lipid catabolic process)
Niben101Scf00317g04014.1	sp|Q9SY02|PP301_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04218g00013.1	sp|Q94AN4|AP2L1_ARATH	****	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01683g17009.1	gb|KEH23128.1|	--*-	F-box protein interaction domain protein [Medicago truncatula]	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf06664g00003.1	sp|Q9Y2X3|NOP58_HUMAN	***-	Nucleolar protein 58	IPR002687 (Nop domain), IPR012974 (NOP5, N-terminal), IPR012976 (NOSIC)	
Niben101Scf03116g02003.1	AT3G29400.1	****	exocyst subunit exo70 family protein E1 LENGTH=658	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf06218g04006.1	dbj|BAA97290.1|	--*-	non-LTR retroelement reverse transcriptase-like [Arabidopsis thaliana]		
Niben101Scf08277g00015.1	sp|Q9LIG2|RLK6_ARATH	*-*-	Receptor-like protein kinase	IPR024788 (Malectin-like carbohydrate-binding domain)	
Niben101Scf03419g03008.1	sp|Q8GWK2|AP2L4_ARATH	*-*-	AP2-like ethylene-responsive transcription factor		
Niben101Scf05467g04002.1	sp|P0CB38|PAB4L_HUMAN	*-**	Polyadenylate-binding protein 4-like	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf17719g01003.1	AT3G52990.1	*-**	Pyruvate kinase family protein LENGTH=527	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf08445g02019.1	sp|Q9ZUM0|C3H17_ARATH	***-	Zinc finger CCCH domain-containing protein 17	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Ctg13782g00003.1	sp|P24806|XTH24_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 24	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00215g00017.1	sp|Q2YT46|GRPE_STAAB	*-*-	Protein GrpE	IPR000740 (GrpE nucleotide exchange factor)	GO:0000774 (adenyl-nucleotide exchange factor activity), GO:0006457 (protein folding), GO:0042803 (protein homodimerization activity), GO:0051087 (chaperone binding)
Niben101Scf29588g00002.1	sp|Q8NEE6|FXL13_HUMAN	*-*-	F-box/LRR-repeat protein 13	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf04528g09002.1	sp|Q9WV55|VAPA_MOUSE	--**	Vesicle-associated membrane protein-associated protein A	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf05625g00007.1	sp|Q6QNL9|KC1_EIMTE	****	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf22688g00021.1	sp|O23693|MLO4_ARATH	***-	MLO-like protein 4	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf02798g05016.1	AT1G65295.1	***-	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=115		
Niben101Scf14312g00014.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004842 (ubiquitin-protein transferase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016567 (protein ubiquitination), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02995g00003.1	sp|Q41001|BCP_PEA	*-*-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf00017g04019.1	AT5G08710.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=434	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf12258g00004.1	sp|O96028|NSD2_HUMAN	--*-	Histone-lysine N-methyltransferase NSD2		
Niben101Scf06326g00024.1			Unknown protein		
Niben101Scf16376g00006.1	AT2G43290.1	****	Calcium-binding EF-hand family protein LENGTH=215	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf30092g00005.1	sp|Q9M117|ARC5A_ARATH	****	Actin-related protein 2/3 complex subunit 5A	IPR006789 (Actin-related protein 2/3 complex subunit 5)	GO:0005885 (Arp2/3 protein complex), GO:0015629 (actin cytoskeleton), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf06969g01020.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf15568g00021.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03628g11005.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00581g00002.1	AT4G18780.1	****	cellulose synthase family protein LENGTH=985	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf03266g04004.1	ref|XP_003614307.1|	*-*-	ATP-dependent DNA helicase PIF1 [Medicago truncatula]		
Niben101Scf06956g01012.1	sp|Q9LSG3|GAUT8_ARATH	****	Galacturonosyltransferase 8	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf04980g00026.1	ref|XP_002535265.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF27117.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04827g00008.1	sp|Q84LH3|WEX_ARATH	*-**	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf06996g02040.1	sp|Q96321|IMA1_ARATH	***-	Importin subunit alpha-1	IPR002652 (Importin-alpha, importin-beta-binding domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006606 (protein import into nucleus), GO:0008565 (protein transporter activity)
Niben101Scf00741g01015.1	sp|F4JP36|HAP2_ARATH	*-*-	Protein HAPLESS 2		
Niben101Scf05211g02009.1	sp|Q7WK83|CLPP_BORBR	*-*-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02618g00002.1	gb|KEH44137.1|	--*-	RING/FYVE/PHD zinc finger protein [Medicago truncatula]		
Niben101Scf02798g01051.1	sp|A5EK97|NUOD_BRASB	****	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03855g03006.1	sp|Q10LG8|TLP6_ORYSJ	***-	Tubby-like F-box protein 6	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf05694g00003.1	sp|Q9M9X4|NFYA2_ARATH	****	Nuclear transcription factor Y subunit A-2	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04319g03004.1			Unknown protein		
Niben101Scf38542g00001.1			Unknown protein		
Niben101Scf01062g05003.1	AT2G24220.1	***-	purine permease 5 LENGTH=361	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Ctg12147g00002.1	emb|CDY19372.1|	*-*-	BnaC05g08810D [Brassica napus]		
Niben101Scf07833g00007.1	sp|Q7WTR3|MDTK_ERWAM	*-*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf06483g02002.1	sp|O48916|FAH1_ARATH	****	Fatty acid 2-hydroxylase 1	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01272g00005.1	ref|XP_002518781.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF43706.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf01429g01005.1	sp|Q9M907|PP217_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf09628g00009.1	sp|Q54PW5|DPH1_DICDI	****	Diphthamide biosynthesis protein 1	IPR002728 (Diphthamide synthesis, DPH1/DPH2)	GO:0005737 (cytoplasm), GO:0017183 (peptidyl-diphthamide biosynthetic process from peptidyl-histidine)
Niben101Scf01056g03016.1	sp|Q8RXH2|NUP85_ARATH	***-	Nuclear pore complex protein NUP85	IPR011502 (Nucleoporin Nup85-like)	
Niben101Scf04077g03006.1	sp|E9Q4Z2|ACACB_MOUSE	*-**	Acetyl-CoA carboxylase 2	IPR004549 (Acetyl-CoA carboxylase, biotin carboxylase), IPR011761 (ATP-grasp fold), IPR016185 (Pre-ATP-grasp domain)	GO:0003824 (catalytic activity), GO:0004075 (biotin carboxylase activity), GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016874 (ligase activity), GO:0046872 (metal ion binding)
Niben101Scf00311g00006.1	sp|Q6CCT1|GLGB_YARLI	--*-	1,4-alpha-glucan-branching enzyme	IPR015902 (Glycoside hydrolase, family 13)	GO:0003824 (catalytic activity)
Niben101Scf08684g03005.1	sp|Q09WZ2|CLPP_MORIN	*-*-	ATP-dependent Clp protease proteolytic subunit		
Niben101Scf10940g00003.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf00449g06005.1	AT3G46460.1	***-	ubiquitin-conjugating enzyme 13 LENGTH=166	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf10217g00009.1	ref|XP_007032069.1|	***-	Family of Uncharacterized protein function [Theobroma cacao] gb|EOY02995.1| Family of Uncharacterized protein function [Theobroma cacao]	IPR006904 (Protein of unknown function DUF716 (TMEM45))	
Niben101Scf26094g00006.1	sp|O23920|HPPD_DAUCA	****	4-hydroxyphenylpyruvate dioxygenase	IPR005956 (4-hydroxyphenylpyruvate dioxygenase), IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	GO:0003868 (4-hydroxyphenylpyruvate dioxygenase activity), GO:0009072 (aromatic amino acid family metabolic process), GO:0016701 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen), GO:0055114 (oxidation-reduction process)
Niben101Scf01899g04012.1	AT4G03620.1	***-	myosin heavy chain-related LENGTH=342		
Niben101Scf09028g00003.1	AT5G07990.1	*-*-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04539g04015.1			Unknown protein		
Niben101Scf03377g05002.1	gb|ABF97907.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf01750g08006.1	sp|Q9SJ56|BLH1_ARATH	*-*-	BEL1-like homeodomain protein 1	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03253g00004.1	sp|P52287|GBB3_RAT	*-**	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3	IPR007319 (Small-subunit processome, Utp21), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0006364 (rRNA processing), GO:0032040 (small-subunit processome)
Niben101Scf05160g00001.1	ref|XP_002304914.1|	****	invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa] gb|EEE85425.1| invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00817g05006.1	sp|Q9M158|STR4_ARATH	***-	Rhodanese-like domain-containing protein 4, chloroplastic	IPR001763 (Rhodanese-like domain)	
Niben101Ctg00228g00001.1	gb|ADV15959.1|	*-*-	maturase, partial (mitochondrion) [Montinia caryophyllacea]		
Niben101Scf01820g00024.1	ref|NP_193381.1|	****	in [Arabidopsis thaliana] gb|AAO42160.1| putative membrane transporter [Arabidopsis thaliana] gb|AAO64127.1| putative membrane transporter [Arabidopsis thaliana] emb|CAJ00306.1| inositol transporter 4 [Arabidopsis thaliana] gb|AEE83759.1| inositol transporter 4 [Arabidopsis thaliana]	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02015g01007.1	sp|Q9LEC8|DHEB_NICPL	*-*-	Glutamate dehydrogenase B	IPR006095 (Glutamate/phenylalanine/leucine/valine dehydrogenase)	GO:0006520 (cellular amino acid metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10026g00003.1	sp|O14526|FCHO1_HUMAN	--*-	FCH domain only protein 1	IPR028565 (Mu homology domain)	
Niben101Scf13005g01001.1	sp|P54345|H2B2_CHLRE	*-*-	Histone H2B.2	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf08465g02001.1	sp|P51612|XPC_MOUSE	****	DNA repair protein complementing XP-C cells homolog	IPR002931 (Transglutaminase-like), IPR004583 (DNA repair protein Rad4)	GO:0003677 (DNA binding), GO:0003684 (damaged DNA binding), GO:0005634 (nucleus), GO:0006289 (nucleotide-excision repair)
Niben101Scf03842g08003.1	sp|Q93Z81|CAX3_ARATH	*-*-	Vacuolar cation/proton exchanger 3	IPR004837 (Sodium/calcium exchanger membrane region)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf18896g00010.1	sp|P81391|MYB05_ANTMA	*-*-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04841g00024.1	tpg|DAA59202.1|	--*-	TPA: hypothetical protein ZEAMMB73_382502 [Zea mays]		
Niben101Scf02565g00011.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR015757 (Calcineurin B protein)	GO:0005509 (calcium ion binding)
Niben101Scf02908g05003.1	sp|Q9FKS4|ATR_ARATH	****	Serine/threonine-protein kinase ATR	IPR003152 (PIK-related kinase, FATC), IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain), IPR014009 (PIK-related kinase), IPR016024 (Armadillo-type fold)	GO:0004674 (protein serine/threonine kinase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf01543g05010.1	AT3G54700.1	****	phosphate transporter 1;7 LENGTH=535	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf12199g00002.1	gb|KEH22373.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf01577g01003.1	AT1G59840.1	***-	cofactor assembly of complex C LENGTH=297	IPR021325 (Protein of unknown function DUF2930)	
Niben101Scf06822g03005.1	emb|CDY31676.1|	*-*-	BnaA05g08710D [Brassica napus]		
Niben101Scf01450g04001.1	ref|XP_007035288.1|	*-*-	Vacuolar ATPase assembly integral membrane protein VMA21-like domain isoform 3 [Theobroma cacao] gb|EOY06214.1| Vacuolar ATPase assembly integral membrane protein VMA21-like domain isoform 3 [Theobroma cacao]		
Niben101Scf01448g01002.1	sp|Q68RU4|YCF2_PANGI	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf00929g00007.1	AT4G13850.1	*-**	glycine-rich RNA-binding protein 2 LENGTH=158	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04547g02001.1	sp|Q9PK04|DAPAT_CHLMU	****	LL-diaminopimelate aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase), IPR019942 (LL-diaminopimelate aminotransferase, plants and Chlamydia type)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0009089 (lysine biosynthetic process via diaminopimelate), GO:0010285 (L,L-diaminopimelate aminotransferase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf06565g03017.1	AT1G48480.1	*-**	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00381g05004.1	sp|O22757|MLO8_ARATH	***-	MLO-like protein 8	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf17802g00013.1	sp|Q9SH60|PP103_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02972g04002.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf01417g05001.1	AT1G06920.1	*-*-	ovate family protein 4 LENGTH=315	IPR006458 (Ovate  protein family, C-terminal), IPR025830 (DNA-binding domain, ovate family-like)	GO:0003677 (DNA binding)
Niben101Scf00218g02003.1	sp|Q9FNX5|DRP1E_ARATH	***-	Dynamin-related protein 1E	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf12919g00008.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02895g01012.1	sp|P48980|BGAL_SOLLC	*-*-	Beta-galactosidase	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03929g02010.1			Unknown protein		
Niben101Scf00465g03007.1	sp|Q42608|PME_BRACM	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf04334g03002.1	AT4G34760.1	***-	SAUR-like auxin-responsive protein family LENGTH=107	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf11969g00013.1	AT3G56160.1	*-*-	Sodium Bile acid symporter family LENGTH=436	IPR016833 (Putative sodium bile acid cotransporter)	
Niben101Scf00149g11009.1	sp|Q8K2V6|IPO11_MOUSE	*-*-	Importin-11	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf01230g02007.1	AT1G10740.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=473	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01166g06005.1	emb|CDY43290.1|	***-	BnaC06g01780D [Brassica napus]		
Niben101Scf01664g04002.1	sp|Q5XF11|FB248_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Ctg13967g00003.1	AT1G50450.1	*-*-	Saccharopine dehydrogenase LENGTH=428	IPR005097 (Saccharopine dehydrogenase / Homospermidine synthase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07250g03019.1	AT4G35000.1	*-**	ascorbate peroxidase 3 LENGTH=287	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01697g09001.1	sp|Q9ZUN5|TET2_ARATH	***-	Tetraspanin-2	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf07646g00001.1			Unknown protein		
Niben101Scf00207g04006.1	sp|Q8VZU2|SY132_ARATH	*-*-	Syntaxin-132		
Niben101Scf05559g02011.1	AT5G19330.1	***-	ARM repeat protein interacting with ABF2 LENGTH=710	IPR011333 (BTB/POZ fold), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf09953g00018.1	sp|A7GJ53|KAD_CLOBL	*-**	Adenylate kinase	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf16707g00002.1	sp|Q10EL1|C3H24_ORYSJ	***-	Zinc finger CCCH domain-containing protein 24	IPR000571 (Zinc finger, CCCH-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf05109g03006.1	gb|AAP44391.1|	*-*-	nematode resistance-like protein [Solanum tuberosum]		
Niben101Scf03227g01002.1	gb|KEH28697.1|	*-*-	lactoylglutathione lyase/glyoxalase I family protein [Medicago truncatula]	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf11383g00015.1	sp|Q8LC83|RS242_ARATH	***-	40S ribosomal protein S24-2	IPR001976 (Ribosomal protein S24e), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09684g00003.1	sp|Q9LZQ1|TBL6_ARATH	***-	Protein trichome birefringence-like 6	IPR026057 (PC-Esterase)	
Niben101Scf04387g01035.1	ref|XP_007049519.1|	*-*-	Mediator of RNA polymerase II transcription subunit 19 [Theobroma cacao] gb|EOX93676.1| Mediator of RNA polymerase II transcription subunit 19 [Theobroma cacao]		
Niben101Scf03281g01009.1	sp|P29162|ASOL_TOBAC	***-	L-ascorbate oxidase homolog	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00105g00001.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]	IPR002182 (NB-ARC), IPR021929 (Late blight resistance protein R1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00234g02013.1	sp|O02773|MA1A1_PIG	*-**	Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA	IPR001382 (Glycoside hydrolase, family 47)	GO:0004571 (mannosyl-oligosaccharide 1,2-alpha-mannosidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane)
Niben101Scf03114g00010.1			Unknown protein		
Niben101Scf02057g00002.1	sp|Q8S944|DRP3A_ARATH	*-*-	Dynamin-related protein 3A	IPR001401 (Dynamin, GTPase domain), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf06641g01006.1	sp|Q5RBW9|TTC27_PONAB	--*-	Tetratricopeptide repeat protein 27	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03268g08002.1	sp|Q7Q732|DHRS7_ANOGA	--**	Dehydrogenase/reductase SDR family protein 7-like	IPR002198 (Short-chain dehydrogenase/reductase SDR)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf04684g01015.1	AT4G27510.1	***-	unknown protein; Has 25 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=728		
Niben101Scf01014g08003.1			Unknown protein		
Niben101Scf01155g05012.1	gb|AAU90303.2|	--**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf03138g01049.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf03093g00015.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04981g00008.1	sp|O80831|BAM7_ARATH	****	Beta-amylase 7	IPR001554 (Glycoside hydrolase, family 14), IPR008540 (BZR1, transcriptional repressor), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf00332g07019.1	AT1G56350.1	*-**	Peptide chain release factor 2 LENGTH=482	IPR004374 (Peptide chain release factor 2)	GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf02219g03001.1	sp|Q4V8C4|WDR5B_RAT	*-*-	WD repeat-containing protein 5B	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf24567g00001.1	dbj|BAB01344.1|	*-*-	reverse transcriptase-like protein [Arabidopsis thaliana]		
Niben101Scf02567g01003.1	sp|Q9Z8J2|TLC1_CHLPN	****	ADP,ATP carrier protein 1	IPR004667 (ADP/ATP carrier protein), IPR020846 (Major facilitator superfamily domain)	GO:0005471 (ATP:ADP antiporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf00288g11008.1	gb|KEH35820.1|	*-*-	RING/FYVE/PHD zinc finger protein [Medicago truncatula]		
Niben101Scf00994g07007.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02145g10002.1	tpg|DAA51287.1|	*-*-	TPA: hypothetical protein ZEAMMB73_941494 [Zea mays]		
Niben101Scf02354g05005.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf14778g00018.1	sp|Q2HJI8|RAB8B_BOVIN	***-	Ras-related protein Rab-8B	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf05044g02018.1	sp|Q9M817|PTR6_ARATH	*-*-	Protein NRT1/ PTR FAMILY 1.2	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01352g02010.1	sp|P51105|DFRA_GERHY	--*-	Dihydroflavonol-4-reductase		
Niben101Scf10650g02001.1	sp|Q8LAL2|IAA26_ARATH	***-	Auxin-responsive protein IAA26	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf04676g01006.1	sp|Q9PKA0|SODM_CHLMU	*-**	Superoxide dismutase [Mn]	IPR001189 (Manganese/iron superoxide dismutase)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01025g08001.1	sp|O70481|UBR1_MOUSE	*-*-	E3 ubiquitin-protein ligase UBR1	IPR003126 (Zinc finger, N-recognin), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf08774g00013.1	AT2G28660.1	***-	Chloroplast-targeted copper chaperone protein LENGTH=265		
Niben101Scf06806g04012.1	sp|Q6YWQ4|HAK25_ORYSJ	****	Potassium transporter 25	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf32510g00003.1	sp|Q8BMK1|METL2_MOUSE	--**	Methyltransferase-like protein 2	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf10450g00001.1	ref|XP_003604780.1|	*-*-	TdcA1-ORF1-ORF2 protein [Medicago truncatula]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf11782g03009.1	AT1G63830.2	***-	PLAC8 family protein LENGTH=232	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf11723g02017.1	sp|Q6L545|GID1_ORYSJ	***-	Gibberellin receptor GID1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf02486g03001.1	gb|ABA98678.1|	*-*-	transposon protein, putative, unclassified [Oryza sativa Japonica Group]	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf00048g01007.1	sp|Q766C2|NEP2_NEPGR	****	Aspartic proteinase nepenthesin-2	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Ctg13721g00007.1	sp|Q01740|FMO1_HUMAN	*-**	Dimethylaniline monooxygenase [N-oxide-forming] 1	IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02764g00001.1	ref|NP_001173127.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAH91856.1| [Oryza sativa Japonica Group]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf03830g02001.1	gb|KEH27969.1|	*-*-	BZIP family transcription factor [Medicago truncatula]		
Niben101Scf01090g04020.1	sp|Q5AP66|SFH5_CANAL	***-	Phosphatidylinositol transfer protein SFH5	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf04114g02035.1	gb|ADV15953.1|	*-*-	maturase, partial (mitochondrion) [Syringa vulgaris]		
Niben101Scf00164g02009.1	sp|B3TN75|PSBB_BRADI	*-*-	Photosystem II CP47 reaction center protein		
Niben101Scf00254g05005.1	sp|Q9Z1Z0|USO1_MOUSE	****	General vesicular transport factor p115	IPR016024 (Armadillo-type fold), IPR024095 (Vesicle tethering protein p115-like)	GO:0000139 (Golgi membrane), GO:0005488 (binding), GO:0005737 (cytoplasm), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0016020 (membrane), GO:0048193 (Golgi vesicle transport), GO:0048280 (vesicle fusion with Golgi apparatus)
Niben101Scf06467g01005.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2		
Niben101Scf09172g02040.1	AT1G19360.1	***-	Nucleotide-diphospho-sugar transferase family protein LENGTH=428	IPR003388 (Reticulon), IPR005069 (Nucleotide-diphospho-sugar transferase), IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf02414g03014.1	sp|Q29RI6|CAB39_BOVIN	*-*-	Calcium-binding protein 39	IPR011989 (Armadillo-like helical), IPR013878 (Mo25-like)	
Niben101Scf01450g01008.1	AT1G78290.2	****	Protein kinase superfamily protein LENGTH=343	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02499g03007.1	sp|O48965|IDI2_CAMAC	****	Isopentenyl-diphosphate Delta-isomerase II	IPR011876 (Isopentenyl-diphosphate delta-isomerase, type 1), IPR015797 (NUDIX hydrolase domain-like)	GO:0004452 (isopentenyl-diphosphate delta-isomerase activity), GO:0008299 (isoprenoid biosynthetic process), GO:0016787 (hydrolase activity)
Niben101Scf07863g00017.1	gb|AES82110.2|	*-*-	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]	IPR005135 (Endonuclease/exonuclease/phosphatase), IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00682g04016.1	gb|AES67906.2|	*-*-	CHUP1, putative [Medicago truncatula]		
Niben101Scf13411g05020.1	sp|Q9SS37|RTNLH_ARATH	***-	Reticulon-like protein B8	IPR003388 (Reticulon)	
Niben101Scf24225g00010.1			Unknown protein		
Niben101Scf07577g00006.1	sp|Q9SK02|RA51B_ARATH	*-*-	DNA repair protein RAD51 homolog 2		
Niben101Scf09684g00002.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf00714g06002.1	AT4G08850.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf00088g01013.1	sp|Q8I147|SINA_DROWI	--**	E3 ubiquitin-protein ligase sina	IPR004162 (E3 ubiquitin-protein ligase SINA like)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development)
Niben101Scf07650g02006.1	sp|Q71V09|H4_CAPAN	***-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	
Niben101Scf07423g03005.1	AT1G29500.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00613g01005.1	sp|Q7WKG2|AQPZ_BORBR	***-	Aquaporin Z	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf09445g04016.1	sp|Q94IR2|CCD1_PHAVU	***-	Carotenoid 9,10(9',10')-cleavage dioxygenase 1	IPR004294 (Carotenoid oxygenase)	
Niben101Scf15260g01006.1			Unknown protein		
Niben101Scf03723g02009.1	sp|Q9NVH0|EXD2_HUMAN	*-**	Exonuclease 3'-5' domain-containing protein 2	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf03923g03003.1	sp|Q9LUH8|HFA6B_ARATH	****	Heat stress transcription factor A-6b	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04722g04013.1	sp|Q9LHQ7|MCES1_ARATH	****	mRNA cap guanine-N7 methyltransferase 1	IPR016899 (mRNA (guanine-N(7))-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0004482 (mRNA (guanine-N7-)-methyltransferase activity), GO:0005634 (nucleus), GO:0006370 (7-methylguanosine mRNA capping)
Niben101Scf11264g01005.1	sp|Q5ZLH4|TM230_CHICK	***-	Transmembrane protein 230	IPR008590 (Protein of unknown function DUF872, transmembrane)	
Niben101Scf02240g08001.1	emb|CDY42673.1|	***-	BnaC04g22330D [Brassica napus]		
Niben101Scf02763g00015.1	sp|Q9FT72|RQL3_ARATH	***-	ATP-dependent DNA helicase Q-like 3	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03045g16008.1	AT1G67900.1	***-	Phototropic-responsive NPH3 family protein LENGTH=631	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	
Niben101Scf05697g02017.1	sp|Q8S8V5|RR3_ATRBE	*-*-	30S ribosomal protein S3, chloroplastic	IPR001351 (Ribosomal protein S3, C-terminal)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05368g06019.1	sp|O22938|Y2182_ARATH	*-*-	Leucine-rich repeat receptor-like tyrosine-protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf09489g00010.1	sp|Q9C8G9|AB1C_ARATH	***-	ABC transporter C family member 1	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf04451g00008.1	AT2G07749.1	*-*-	Mitovirus RNA-dependent RNA polymerase LENGTH=246	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf02344g00007.1	sp|Q8GYP6|PPR49_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00593g04017.1	sp|P40973|PLY_LILLO	****	Pectate lyase	IPR007524 (Pectate lyase, N-terminal), IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	GO:0030570 (pectate lyase activity)
Niben101Scf02429g05008.1	AT1G21150.1	****	Mitochondrial transcription termination factor family protein LENGTH=390	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05956g01015.1	sp|Q9LD45|BI1_ARATH	***-	Bax inhibitor 1	IPR006214 (Bax inhibitor 1-related)	
Niben101Scf00271g01002.1			Unknown protein		
Niben101Scf01752g03011.1	ref|XP_007020738.1|	***-	LIM and calponin domains-containing protein 1, putative [Theobroma cacao] gb|EOY12263.1| LIM and calponin domains-containing protein 1, putative [Theobroma cacao]		
Niben101Scf00207g02007.1	AT5G17980.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1049	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf10490g00013.1	sp|Q9SCV9|BGAL3_ARATH	***-	Beta-galactosidase 3	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Ctg15819g00001.1	sp|Q9CAM8|PP100_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02294g04012.1			Unknown protein		
Niben101Scf06736g06007.1	sp|Q9SY33|PER7_ARATH	****	Peroxidase 7	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01382g05008.1	sp|Q9LX65|VATH_ARATH	****	V-type proton ATPase subunit H	IPR004908 (ATPase, V1 complex, subunit H)	GO:0000221 (vacuolar proton-transporting V-type ATPase, V1 domain), GO:0005488 (binding), GO:0005515 (protein binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf00449g05023.1	sp|O60293|ZC3H1_HUMAN	--*-	Zinc finger C3H1 domain-containing protein	IPR019607 (Putative zinc-finger domain)	
Niben101Scf02972g02020.1	AT4G23900.1	****	Nucleoside diphosphate kinase family protein LENGTH=237	IPR001564 (Nucleoside diphosphate kinase)	GO:0004550 (nucleoside diphosphate kinase activity), GO:0005524 (ATP binding), GO:0006165 (nucleoside diphosphate phosphorylation), GO:0006183 (GTP biosynthetic process), GO:0006228 (UTP biosynthetic process), GO:0006241 (CTP biosynthetic process)
Niben101Scf01448g01001.1	sp|Q0G9Q1|YCF2_DAUCA	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf06528g04016.1	AT2G34660.1	***-	multidrug resistance-associated protein 2 LENGTH=1623	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf05932g02004.1			Unknown protein		
Niben101Scf01505g00011.1	sp|P48980|BGAL_SOLLC	***-	Beta-galactosidase	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf00420g06006.1	sp|Q55CA0|VPS26_DICDI	***-	Vacuolar protein sorting-associated protein 26	IPR014756 (Immunoglobulin E-set), IPR028934 (Vacuolar protein sorting protein 26 related)	
Niben101Scf04418g13014.1	sp|P39538|UBP12_YEAST	*-**	Ubiquitin carboxyl-terminal hydrolase 12	IPR006615 (Peptidase C19, ubiquitin-specific peptidase, DUSP domain), IPR028134 (Ubiquitin carboxyl-terminal hydrolase USP), IPR028889 (Ubiquitin specific protease domain)	GO:0004843 (ubiquitin-specific protease activity), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0016579 (protein deubiquitination), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf05132g02006.1	sp|Q9FDZ9|RL212_ARATH	***-	60S ribosomal protein L21-2	IPR001147 (Ribosomal protein L21e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10369g01016.1	AT3G22790.1	*-*-	Kinase interacting (KIP1-like) family protein LENGTH=1728	IPR011684 (KIP1-like)	
Niben101Scf00313g00006.1	ref|XP_002527316.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF35068.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00163g23025.1	sp|Q6DFF9|MABP1_XENLA	--**	Mitogen-activated protein kinase-binding protein 1	IPR011042 (Six-bladed beta-propeller, TolB-like), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf07024g01005.1	AT2G44090.1	***-	Ankyrin repeat family protein LENGTH=582	IPR020683 (Ankyrin repeat-containing domain)	
Niben101Scf05846g00004.1	AT5G18020.1	***-	SAUR-like auxin-responsive protein family LENGTH=91	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03114g08005.1	sp|Q8VH51|RBM39_MOUSE	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf10210g00004.1	sp|Q7XJE6|MCA1_ARATH	***-	Metacaspase-1	IPR005735 (Zinc finger, LSD1-type), IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04500g00007.1	sp|Q6NKW9|E138_ARATH	***-	Glucan endo-1,3-beta-glucosidase 8	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07157g00005.1			Unknown protein		
Niben101Scf01820g00025.1	sp|Q8GTL5|METK_CARPA	****	S-adenosylmethionine synthase	IPR002133 (S-adenosylmethionine synthetase)	GO:0004478 (methionine adenosyltransferase activity), GO:0005524 (ATP binding), GO:0006556 (S-adenosylmethionine biosynthetic process)
Niben101Scf00286g04004.1	AT4G14500.1	****	Polyketide cyclase/dehydrase and lipid transport superfamily protein LENGTH=433	IPR002913 (START domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf03768g03019.1	AT3G61980.1	*-*-	serine protease inhibitor, Kazal-type family protein LENGTH=117		
Niben101Scf03894g02017.1	AT4G24120.1	***-	YELLOW STRIPE like 1 LENGTH=673	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf02459g05001.1	sp|P93654|SYP22_ARATH	--*-	Syntaxin-22		
Niben101Scf05177g01029.1	AT5G23370.1	***-	GRAM domain-containing protein / ABA-responsive protein-related LENGTH=219	IPR004182 (GRAM domain)	
Niben101Scf09260g01010.1	sp|Q949Z1|PGLR4_ARATH	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01437g00010.1	sp|P0C8K4|RPB2_ASFP4	*-**	DNA-directed RNA polymerase subunit 2	IPR007644 (RNA polymerase, beta subunit, protrusion), IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf05082g02001.1	emb|CDY45421.1|	*-*-	BnaA07g32010D [Brassica napus]		
Niben101Scf04940g00012.1	sp|Q42134|PSA5B_ARATH	***-	Proteasome subunit alpha type-5-B	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf02786g01015.1			Unknown protein		
Niben101Scf01947g01005.1	sp|Q8LDC8|ERF92_ARATH	*-**	Ethylene-responsive transcription factor 1B	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09107g00006.1	AT1G13920.1	*-*-	Remorin family protein LENGTH=345	IPR005516 (Remorin, C-terminal)	
Niben101Scf08684g03004.1	sp|Q9BBR0|RK20_LOTJA	***-	50S ribosomal protein L20, chloroplastic	IPR005813 (Ribosomal protein L20), IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf06826g05013.1	AT3G22270.1	***-	Topoisomerase II-associated protein PAT1 LENGTH=782		
Niben101Scf07987g01015.1	sp|B1I1I7|RS10_DESAP	--*-	30S ribosomal protein S10	IPR001848 (Ribosomal protein S10), IPR027486 (Ribosomal protein S10 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01611g04025.1	gb|ADM75415.1|	***-	late embryogenesis abundant-like protein, partial [Picea sitchensis]	IPR009646 (Root cap)	
Niben101Scf03990g02014.1	gb|AAU90304.1|	--*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf04436g11005.1	gb|ABL97972.1|	--*-	serine-rich protein [Brassica rapa] emb|CDY19808.1| BnaA09g04610D [Brassica napus]		
Niben101Scf00713g05006.1	sp|Q9FIZ7|OPLA_ARATH	***-	5-oxoprolinase	IPR002821 (Hydantoinase/oxoprolinase), IPR003692 (Hydantoinase B/oxoprolinase), IPR008040 (Hydantoinaseoxoprolinase, N-terminal)	GO:0003824 (catalytic activity), GO:0016787 (hydrolase activity)
Niben101Scf03989g02009.1	sp|P26197|ACT2_ABSGL	*-*-	Actin-2	IPR004000 (Actin family)	
Niben101Scf01304g13004.1	sp|P0DKE2|PROFU_OLEEU	***-	Profilin-3	IPR005455 (Profilin), IPR027310 (Profilin conserved site)	GO:0003779 (actin binding)
Niben101Scf18726g00001.1			Unknown protein		
Niben101Scf00451g00033.1	sp|B8JAZ0|NUON_ANAD2	*-*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf02668g01014.1	AT5G03990.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=302		
Niben101Scf03039g02004.1	AT1G51560.1	***-	Pyridoxamine 5'-phosphate oxidase family protein LENGTH=392	IPR012349 (FMN-binding split barrel)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05631g00014.1	sp|P86809|NLTP2_APIGA	***-	Non-specific lipid-transfer protein 2	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf12725g00008.1	sp|Q816I1|MENE_BACCR	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf09345g00004.1	AT3G51240.1	***-	flavanone 3-hydroxylase LENGTH=358	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02029g01012.1	gb|AFW67499.1|	***-	ternary complex factor MIP1 [Zea mays]	IPR006869 (Domain of unknown function DUF547)	
Niben101Scf01037g02005.1	sp|O23044|PER3_ARATH	****	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06435g02011.1	ref|XP_002529925.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF32479.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05378g01004.1	sp|O81123|ZIP1_ARATH	*-**	Zinc transporter 1	IPR003689 (Zinc/iron permease)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf06956g01011.1	sp|Q9XJ54|NTF2_ORYSJ	*-**	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf03116g04006.1	AT3G17430.1	***-	Nucleotide-sugar transporter family protein LENGTH=375	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf09079g01003.1	sp|Q8S8Q6|TET8_ARATH	***-	Tetraspanin-8	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf03460g07019.1	gb|AFC90229.1|	****	nucleotide-binding site leucine-rich repeat protein, partial [Rhododendron formosanum]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf16974g00001.1			Unknown protein		
Niben101Scf01150g07003.1	AT4G31170.1	*-**	Protein kinase superfamily protein LENGTH=412	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01093g04003.1	AT4G18710.1	****	Protein kinase superfamily protein LENGTH=380	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03006g10013.1	sp|Q12870|TCF15_HUMAN	--*-	Transcription factor 15	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00742g01014.1	emb|CDY03795.1|	***-	BnaC01g29120D [Brassica napus]		
Niben101Scf07935g01002.1	prf||1718313A	--*-	tnp1 protein		
Niben101Scf06081g00010.1	sp|P61877|EF2_PYRFU	--*-	Elongation factor 2	IPR000795 (Elongation factor, GTP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf05565g00003.1	sp|Q84MA2|IP5P1_ARATH	*-*-	Type I inositol 1,4,5-trisphosphate 5-phosphatase 1	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf00597g08034.1	sp|Q6NM73|CRR3_ARATH	***-	Cysteine-rich repeat secretory protein 3	IPR002902 (Gnk2-homologous domain)	
Niben101Scf05269g04001.1	AT1G36160.1	****	acetyl-CoA carboxylase 1 LENGTH=2254	IPR000089 (Biotin/lipoyl attachment), IPR011761 (ATP-grasp fold), IPR011764 (Biotin carboxylation domain), IPR013537 (Acetyl-CoA carboxylase, central domain), IPR016185 (Pre-ATP-grasp domain), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0003989 (acetyl-CoA carboxylase activity), GO:0004075 (biotin carboxylase activity), GO:0005524 (ATP binding), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016874 (ligase activity), GO:0046872 (metal ion binding)
Niben101Scf07652g00001.1	sp|Q6L8G0|ZIP5_ORYSJ	****	Zinc transporter 5	IPR003689 (Zinc/iron permease)	GO:0005385 (zinc ion transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport), GO:0071577 (zinc ion transmembrane transport)
Niben101Scf07741g01011.1	sp|Q9LFN8|GLR26_ARATH	*-**	Glutamate receptor 2.6	IPR001320 (Ionotropic glutamate receptor)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf08682g01002.1			Unknown protein		
Niben101Scf06825g00009.1	AT3G05680.2	*-*-	embryo defective 2016 LENGTH=2152		
Niben101Scf04000g01012.1	sp|P42124|EZ_DROME	*-*-	Histone-lysine N-methyltransferase E(z)		
Niben101Scf01866g01008.1	sp|Q9SSR4|PPR77_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05977g01001.1	sp|A7FHJ7|MDTK_YERP3	*-*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf07168g01004.1	sp|P55871|IF2B_MALDO	****	Eukaryotic translation initiation factor 2 subunit beta	IPR002735 (Translation initiation factor IF2/IF5)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf04217g04003.1	AT5G62350.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=202	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf11084g00012.1	AT5G04160.1	***-	Nucleotide-sugar transporter family protein LENGTH=309	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf02516g00007.1	sp|O04057|ASPR_CUCPE	*-**	Aspartic proteinase	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00982g04001.1	sp|P46903|NATA_BACSU	*-**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR026082 (ABC transporter A, ABCA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005215 (transporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity)
Niben101Scf02243g01030.1	AT1G03920.1	****	Protein kinase family protein LENGTH=569	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03169g08009.1	sp|Q84KK4|I4OMT_LOTJA	*-**	Isoflavone 4'-O-methyltransferase	IPR016461 (O-methyltransferase COMT-type)	GO:0008168 (methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf01696g06047.1	sp|Q9FNB5|AB6G_ARATH	*-*-	ABC transporter G family member 6	IPR013525 (ABC-2 type transporter)	GO:0016020 (membrane)
Niben101Scf06910g02004.1			Unknown protein		
Niben101Scf01001g05001.1	AT2G26980.4	****	CBL-interacting protein kinase 3 LENGTH=451	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03953g00001.1	sp|Q9FSB8|CHS2_RUTGR	*-*-	Chalcone synthase 2	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf05971g00007.1	sp|Q9LHE5|TO401_ARATH	****	Mitochondrial import receptor subunit TOM40-1	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0055085 (transmembrane transport)
Niben101Scf20904g00016.1	sp|E1V4F9|RLMD_HALED	*-*-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	IPR002792 (TRAM domain), IPR012340 (Nucleic acid-binding, OB-fold), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01305g03002.1	AT1G74340.1	***-	dolichol phosphate-mannose biosynthesis regulatory protein-related LENGTH=80	IPR009914 (Dolichol phosphate-mannose biosynthesis regulatory)	GO:0009059 (macromolecule biosynthetic process), GO:0030176 (integral component of endoplasmic reticulum membrane)
Niben101Scf01734g01061.1	gb|ABE91850.1|	***-	Protein of unknown function DUF707 [Medicago truncatula] gb|ABE91966.1| Protein of unknown function DUF707 [Medicago truncatula] gb|KEH36408.1| lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf07977g02010.1	ref|WP_026732973.1|	***-	membrane protein [Fischerella sp. PCC 9605]	IPR005031 (Streptomyces cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf03888g01007.1	sp|Q09020|PR4_PHAVU	***-	Wound-induced basic protein	IPR012643 (Wound-inducible basic)	
Niben101Scf02869g02011.1	AT1G03940.1	****	HXXXD-type acyl-transferase family protein LENGTH=469	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02104g00001.1	sp|Q49L18|PSBA_EUCGG	****	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009055 (electron carrier activity), GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf05364g00007.1	sp|O82703|VATG2_TOBAC	****	V-type proton ATPase subunit G 2	IPR005124 (Vacuolar (H+)-ATPase G subunit)	GO:0015992 (proton transport), GO:0016471 (vacuolar proton-transporting V-type ATPase complex), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances)
Niben101Scf11009g00018.1	sp|P80313|TCPH_MOUSE	*-**	T-complex protein 1 subunit eta	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process)
Niben101Scf04738g04012.1	sp|Q9M2J1|MCC19_ARATH	*-*-	MATH domain and coiled-coil domain-containing protein	IPR008974 (TRAF-like)	GO:0005515 (protein binding)
Niben101Scf06482g01001.1	AT2G29050.1	***-	RHOMBOID-like 1 LENGTH=389	IPR002610 (Peptidase S54, rhomboid)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf01380g01024.1	gb|AAF86687.1|	*-*-	MTD1 [Medicago truncatula]		
Niben101Scf06779g00008.1	sp|Q96524|CRY2_ARATH	***-	Cryptochrome-2	IPR002081 (Cryptochrome/DNA photolyase, class 1)	GO:0003913 (DNA photolyase activity), GO:0006281 (DNA repair)
Niben101Scf03720g00008.1	sp|Q8VHC5|CABP4_MOUSE	--**	Calcium-binding protein 4	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00340g07002.1	sp|Q9SFF9|GL17_ARATH	***-	Germin-like protein subfamily 1 member 7	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf05381g01001.1	sp|Q3J7X9|HLDD_NITOC	***-	ADP-L-glycero-D-manno-heptose-6-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf01062g08012.1	sp|O25903|PLSC_HELPY	--**	1-acyl-sn-glycerol-3-phosphate acyltransferase	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf02764g04003.1			Unknown protein		
Niben101Scf10877g00001.1	sp|Q9LTS3|CKX3_ARATH	****	Cytokinin dehydrogenase 3	IPR016164 (FAD-linked oxidase-like, C-terminal), IPR016166 (FAD-binding, type 2), IPR016170 (Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0009690 (cytokinin metabolic process), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0019139 (cytokinin dehydrogenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01983g01003.1	sp|P52409|E13B_WHEAT	--*-	Glucan endo-1,3-beta-glucosidase		
Niben101Scf03295g10008.1	sp|A2YEZ6|SAP8_ORYSI	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	IPR000058 (Zinc finger, AN1-type), IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf07463g01008.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01942g06001.1	gb|KEH43633.1|	***-	late embryogenesis abundant protein, putative [Medicago truncatula]		
Niben101Scf01426g04007.1	gb|ABA95403.1|	*-*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf04488g00026.1	sp|A5FZV4|RL24_ACICJ	*-*-	50S ribosomal protein L24	IPR003256 (Ribosomal protein L24)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02236g02003.1	sp|Q99K82|SMOX_MOUSE	***-	Spermine oxidase	IPR002937 (Amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04437g01002.1	ref|XP_002515459.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF46908.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04553g00010.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf03670g00003.1	sp|Q5K4R0|MAD47_ORYSJ	*-*-	MADS-box transcription factor 47	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01802g00005.1	AT4G36950.1	****	mitogen-activated protein kinase kinase kinase 21 LENGTH=336	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06538g01001.1	sp|Q3UIW5|RNF10_MOUSE	--*-	RING finger protein 10	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08651g04017.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01631g00004.1	sp|Q9FGF0|PGML1_ARATH	***-	Phosphoglycerate mutase-like protein 1	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf02750g02001.1	sp|P59468|LBD24_ARATH	--*-	LOB domain-containing protein 24	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf08199g01007.1	sp|Q84T94|P2C35_ORYSJ	*-*-	Protein phosphatase 2C 35	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf01001g07026.1	AT2G41090.1	****	Calcium-binding EF-hand family protein LENGTH=191	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03873g01009.1	sp|Q9ZVJ6|ANXD4_ARATH	*-*-	Annexin D4	IPR018502 (Annexin repeat)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf01209g02015.1	sp|Q9SV30|GATA8_ARATH	*-**	GATA transcription factor 8	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07437g04013.1	sp|Q05B92|TFE3_BOVIN	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00187g02016.1	sp|A0LQM1|RLMN_SYNFM	*-**	Dual-specificity RNA methyltransferase RlmN	IPR004383 (Ribosomal RNA large subunit methyltransferase RlmN/Cfr)	GO:0005737 (cytoplasm), GO:0006364 (rRNA processing), GO:0008173 (RNA methyltransferase activity)
Niben101Scf02578g00002.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf02316g00019.1	gb|KEH34478.1|	*-*-	myb-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf04109g09003.1	AT2G01190.1	*-*-	Octicosapeptide/Phox/Bem1p family protein LENGTH=720	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf09549g00003.1	dbj|BAB01940.1|	--*-	non-LTR retrolelement reverse transcriptase-like protein [Arabidopsis thaliana]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf02752g06004.1			Unknown protein		
Niben101Scf03478g00009.1	emb|CDY52773.1|	--*-	BnaC03g74910D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf10442g00006.1			Unknown protein		
Niben101Scf01007g00009.1	sp|Q54RB9|CMC_DICDI	****	Calcium-binding mitochondrial carrier protein	IPR002067 (Mitochondrial carrier protein), IPR011992 (EF-hand domain pair), IPR023395 (Mitochondrial carrier domain)	GO:0005509 (calcium ion binding), GO:0055085 (transmembrane transport)
Niben101Scf05535g00009.1	sp|P31916|MAT2_EUGGR	*-*-	Maturase-like protein 2	IPR000477 (Reverse transcriptase domain), IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf04039g02011.1	sp|Q9H4A4|AMPB_HUMAN	***-	Aminopeptidase B	IPR001930 (Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity), GO:0008270 (zinc ion binding), GO:0019370 (leukotriene biosynthetic process)
Niben101Scf00017g01009.1	AT3G17840.1	*-**	receptor-like kinase 902 LENGTH=647	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00234g01024.1	sp|Q96253|ATP5E_ARATH	****	ATP synthase subunit epsilon, mitochondrial	IPR006721 (ATPase, F1 complex, epsilon  subunit, mitochondrial)	GO:0000275 (mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)), GO:0015986 (ATP synthesis coupled proton transport), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf00438g00032.1			Unknown protein		
Niben101Scf04146g01021.1	AT5G18750.1	*-*-	DNAJ heat shock N-terminal domain-containing protein LENGTH=884	IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf04410g03001.1	AT5G65590.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=316	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08304g05008.1			Unknown protein		
Niben101Scf10428g00007.1	gb|KEH23636.1|	--*-	NBS-LRR disease resistance protein [Medicago truncatula]		
Niben101Scf04832g02002.1			Unknown protein		
Niben101Scf00033g07005.1	ref|XP_007048355.1|	*-*-	O-fuc isoform 1 [Theobroma cacao]	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf10241g03001.1	emb|CDX97158.1|	***-	BnaC09g44670D [Brassica napus]	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf04028g02005.1	sp|P93711|CAMT_POPKI	****	Caffeoyl-CoA O-methyltransferase	IPR002935 (O-methyltransferase, family 3), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008171 (O-methyltransferase activity)
Niben101Scf00247g01002.1	sp|Q9ZNV9|AHP1_ARATH	***-	Histidine-containing phosphotransfer protein 1	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity)
Niben101Scf00240g03016.1	sp|A8P7F7|NOP9_COPC7	***-	Nucleolar protein 9	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf06869g02006.1	sp|P68432|H31_BOVIN	***-	Histone H3.1	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf01237g07002.1	sp|Q9SIY8|LAC5_ARATH	***-	Laccase-5	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01219g06024.1	sp|B4RBL4|DADA_PHEZH	--*-	D-amino acid dehydrogenase		
Niben101Scf08482g01006.1	AT1G01110.2	***-	IQ-domain 18 LENGTH=527	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf08984g00008.1	sp|O76021|RL1D1_HUMAN	--*-	Ribosomal L1 domain-containing protein 1	IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	
Niben101Scf05175g03007.1	AT1G68820.1	***-	Transmembrane Fragile-X-F-associated protein LENGTH=468	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR019396 (Transmembrane Fragile-X-F-associated protein)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf11552g04008.1	sp|Q00766|PHS1_DICDI	****	Glycogen phosphorylase 1	IPR000811 (Glycosyl transferase, family 35), IPR002912 (ACT domain)	GO:0004645 (phosphorylase activity), GO:0005975 (carbohydrate metabolic process), GO:0008152 (metabolic process), GO:0008184 (glycogen phosphorylase activity), GO:0016597 (amino acid binding), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf15963g01004.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01639g04001.1	sp|Q9LUH8|HFA6B_ARATH	****	Heat stress transcription factor A-6b	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04832g02004.1	sp|O75132|ZBED4_HUMAN	--*-	Zinc finger BED domain-containing protein 4	IPR008906 (HAT dimerisation domain, C-terminal), IPR012337 (Ribonuclease H-like domain), IPR025525 (hAT-like transposase, RNase-H fold)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00638g00005.1	sp|Q1PEY6|EPFL6_ARATH	*-*-	EPIDERMAL PATTERNING FACTOR-like protein 6		
Niben101Scf00582g01038.1	sp|Q980A0|APGM_SULSO	***-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	IPR004456 (Bisphosphoglycerate-independent phosphoglycerate mutase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0046872 (metal ion binding)
Niben101Scf08767g00004.1	AT1G33780.1	***-	Protein of unknown function (DUF179) LENGTH=325	IPR003774 (Protein of unknown function UPF0301)	
Niben101Scf02286g00012.1	sp|Q94K00|TBL28_ARATH	*-*-	Protein trichome birefringence-like 28	IPR026057 (PC-Esterase)	
Niben101Scf09459g02005.1	sp|Q9MAT6|HMG15_ARATH	***-	High mobility group B protein 15	IPR001606 (ARID DNA-binding domain), IPR009071 (High mobility group box domain)	GO:0003677 (DNA binding)
Niben101Scf00491g04001.1	AT1G49040.1	***-	stomatal cytokinesis defective / SCD1 protein (SCD1) LENGTH=1187	IPR001194 (DENN domain), IPR005112 (dDENN domain), IPR005113 (uDENN domain), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf05348g00002.1	sp|B7MY16|FADJ_ECO81	--*-	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04387g01036.1	sp|Q6UNT2|RL5_CUCSA	***-	60S ribosomal protein L5	IPR005484 (Ribosomal protein L18/L5), IPR025607 (Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0008097 (5S rRNA binding)
Niben101Scf08192g01001.1	AT5G54290.2	*-**	cytochrome c biogenesis protein family LENGTH=355	IPR003834 (Cytochrome c assembly protein, transmembrane domain)	GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0055114 (oxidation-reduction process)
Niben101Scf11608g01012.1	sp|Q9LXT9|CALS3_ARATH	****	Callose synthase 3	IPR003440 (Glycosyl transferase, family 48), IPR023175 (Vacuolar protein sorting-associate protein Vta1/Callose synthase, N-terminal domain), IPR026899 (1,3-beta-glucan synthase subunit FKS1-like, domain-1)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf10524g05004.1			Unknown protein		
Niben101Scf04730g01022.1	ref|NP_001058951.1|	*-*-	product [Oryza sativa Japonica Group]	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf04276g04022.1	sp|Q823T2|DNAJ_CHLCV	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf01391g03009.1	AT4G02940.1	****	oxidoreductase, 2OG-Fe(II) oxygenase family protein LENGTH=569	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03478g00007.1	gb|AIE98281.1|	--*-	ribosomal protein S6e (RP-S6e, RPS6) [uncultured marine thaumarchaeote KM3_04_H11]		
Niben101Scf00786g01009.1	AT3G27020.1	***-	YELLOW STRIPE like 6 LENGTH=676	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf02837g08017.1	AT2G44090.1	***-	Ankyrin repeat family protein LENGTH=582	IPR020683 (Ankyrin repeat-containing domain)	
Niben101Scf06664g00004.1	sp|Q8LB81|GDL79_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf08156g08017.1	sp|A4QJM5|PSBB_AETGR	*-**	Photosystem II CP47 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf06078g03022.1	sp|Q4R888|HS71L_MACFA	--*-	Heat shock 70 kDa protein 1-like	IPR013126 (Heat shock protein 70 family)	
Niben101Scf07646g00002.1			Unknown protein		
Niben101Scf03138g01048.1	sp|P35614|ERF1Z_ARATH	****	Eukaryotic peptide chain release factor subunit 1-3	IPR004403 (Peptide chain release factor eRF1/aRF1), IPR029064 (50S ribosomal protein L30e-like)	GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf00247g01001.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf29588g00001.1	AT5G35570.1	***-	O-fucosyltransferase family protein LENGTH=652	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf05892g00003.1	sp|A2SPL5|RL5_METLZ	***-	50S ribosomal protein L5	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09512g04025.1	ref|XP_002513646.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF49049.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf00520g09002.1	sp|Q13188|STK3_HUMAN	--**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02123g03009.1	AT5G13020.1	***-	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein LENGTH=397	IPR005491 (EMSY N-terminal), IPR016055 (Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III), IPR019023 (Lamin-B receptor of TUDOR domain)	GO:0005975 (carbohydrate metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf00332g07018.1	AT1G69690.1	*-*-	TCP family transcription factor LENGTH=325	IPR005333 (Transcription factor, TCP)	
Niben101Scf10785g01001.1	ref|XP_002869709.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH45968.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf01470g00001.1	sp|P46668|ATHB6_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-6	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf06190g03006.1	AT1G15760.1	***-	Sterile alpha motif (SAM) domain-containing protein LENGTH=202	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf01634g05010.1	sp|P0CD61|GPT_DICDI	***-	UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase	IPR000715 (Glycosyl transferase, family 4)	GO:0008963 (phospho-N-acetylmuramoyl-pentapeptide-transferase activity), GO:0016021 (integral component of membrane)
Niben101Scf00448g07004.1	sp|Q9JI10|STK3_MOUSE	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02807g11010.1	ref|XP_007049039.1|	*-*-	FAR1-related sequence 2, putative isoform 5 [Theobroma cacao] gb|EOX93196.1| FAR1-related sequence 2, putative isoform 5 [Theobroma cacao]	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf02199g01009.1	AT5G45310.1	***-	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=352		
Niben101Scf05417g03005.1	sp|Q9LQ16|PPR94_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00142g01011.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf07709g01012.1	sp|Q8LBW3|LBD12_ARATH	*-*-	LOB domain-containing protein 12	IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol-binding domain), IPR004146 (DC1), IPR004883 (Lateral organ boundaries, LOB), IPR011424 (C1-like)	GO:0035556 (intracellular signal transduction), GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02270g02006.1	AT1G51100.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=211		
Niben101Scf08041g01022.1	AT5G12460.1	***-	Protein of unknown function (DUF604) LENGTH=441	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf03171g03019.1			Unknown protein		
Niben101Scf08410g01008.1	emb|CDY66152.1|	***-	BnaAnng21740D [Brassica napus]		
Niben101Scf06996g02041.1	sp|B0B7R0|DNAJ_CHLT2	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Ctg13799g00002.1			Unknown protein		
Niben101Scf03266g04005.1	gb|AAK13103.1|AC078839_19	*-**	Helicase-like protein [Oryza sativa Japonica Group]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf05839g00020.1	sp|Q9I0J1|NUOL_PSEAE	*-*-	NADH-quinone oxidoreductase subunit L	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf00482g10008.1	sp|Q9FJI1|KAD6_ARATH	*-*-	Adenylate kinase isoenzyme 6 homolog		
Niben101Scf06909g00008.1	ref|XP_002528690.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF33679.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11101g00002.1	AT3G56200.1	***-	Transmembrane amino acid transporter family protein LENGTH=435	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf06432g03002.1	AT3G16660.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=180		
Niben101Scf06483g02001.1	sp|O48916|FAH1_ARATH	*-*-	Fatty acid 2-hydroxylase 1		
Niben101Scf11072g00004.1	AT5G04870.1	****	calcium dependent protein kinase 1 LENGTH=610	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07833g00008.1	sp|Q4IJH1|DBP3_GIBZE	*-**	ATP-dependent RNA helicase DBP3	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf00742g00005.1	AT1G61150.1	***-	LisH and RanBPM domains containing protein LENGTH=243	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR013144 (CRA domain), IPR024964 (CTLH/CRA C-terminal to LisH motif domain)	GO:0005515 (protein binding)
Niben101Scf00474g02009.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf14803g00004.1	AT1G20925.1	***-	Auxin efflux carrier family protein LENGTH=472	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02104g00003.1	sp|Q06GT2|RK2_DRIGR	****	50S ribosomal protein L2, chloroplastic	IPR002171 (Ribosomal protein L2)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit), GO:0016740 (transferase activity)
Niben101Scf03486g02009.1	sp|Q12788|TBL3_HUMAN	--*-	Transducin beta-like protein 3	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02243g06019.1	sp|Q9F234|AGL2_BACTQ	***-	Alpha-glucosidase 2	IPR000322 (Glycoside hydrolase family 31), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf00271g05011.1	sp|Q5E9Y6|PRUNE_BOVIN	***-	Protein prune homolog	IPR004097 (DHHA2 domain)	GO:0005737 (cytoplasm), GO:0016462 (pyrophosphatase activity)
Niben101Scf00370g02012.1			Unknown protein		
Niben101Scf01687g08004.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf08940g01006.1	emb|CDY53329.1|	***-	BnaAnng12320D [Brassica napus]		
Niben101Scf01444g02001.1	sp|Q9LN01|PPR21_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Ctg14882g00002.1	AT2G45680.1	*-*-	TCP family transcription factor LENGTH=356	IPR005333 (Transcription factor, TCP)	
Niben101Scf02467g01048.1	AT5G35200.1	***-	ENTH/ANTH/VHS superfamily protein LENGTH=544	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf02996g06004.1	gb|KFJ92727.1|	***-	enoyl-CoA hydratase [Pseudomonas sp. 1-7]	IPR001753 (Crotonase superfamily), IPR014748 (Crontonase, C-terminal), IPR018376 (Enoyl-CoA hydratase/isomerase, conserved site), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00087g09003.1	sp|O75494|SRS10_HUMAN	*-*-	Serine/arginine-rich splicing factor 10	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03038g07007.1	sp|P53145|LSG1_YEAST	--*-	Large subunit GTPase 1		
Niben101Scf01521g04007.1			Unknown protein		
Niben101Scf08041g02010.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR010543 (Domain of unknown function DUF1117), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06236g00011.1	sp|Q8GXF0|RA51C_ARATH	****	DNA repair protein RAD51 homolog 3	IPR016467 (DNA recombination and repair protein, RecA-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0008094 (DNA-dependent ATPase activity)
Niben101Scf08127g08018.1	sp|Q9SV82|FBD40_ARATH	***-	FBD-associated F-box protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf04600g00007.1	sp|Q9M5X7|NLTP_MALDO	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf00367g05002.1	sp|Q5A4W8|BDF1_CANAL	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf03450g02025.1	sp|P09444|LEA34_GOSHI	*-*-	Late embryogenesis abundant protein D-34	IPR007011 (Seed maturation protein)	
Niben101Scf01212g03008.1	gb|ABA99600.2|	--*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Ctg15041g00004.1	AT5G48930.1	****	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase LENGTH=433	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03488g06004.1	sp|Q40476|ERF1_TOBAC	*-**	Ethylene-responsive transcription factor 1	IPR015300 (DNA-binding pseudobarrel domain), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09751g01001.1	AT2G44970.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=503	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01478g07007.1	sp|A2Z9Q7|MAD56_ORYSI	*-*-	MADS-box transcription factor 56	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01869g00006.1	sp|Q8LA53|MBD2_ARATH	****	Methyl-CpG-binding domain-containing protein 2	IPR011124 (Zinc finger, CW-type), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf00395g02016.1	ref|XP_002526666.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF35688.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05467g04003.1	sp|Q9FXA2|PABP8_ARATH	*-**	Polyadenylate-binding protein 8	IPR002004 (Polyadenylate-binding protein/Hyperplastic disc protein)	GO:0003723 (RNA binding)
Niben101Scf02460g03001.1	sp|Q9XG77|PSA6_TOBAC	*-*-	Proteasome subunit alpha type-6	IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf02936g04003.1	sp|O24150|CAMT3_TOBAC	*-**	Caffeoyl-CoA O-methyltransferase 3	IPR002935 (O-methyltransferase, family 3), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008171 (O-methyltransferase activity)
Niben101Scf01785g05001.1	sp|Q6Z844|COPZ2_ORYSJ	***-	Coatomer subunit zeta-2	IPR011012 (Longin-like domain)	GO:0006810 (transport)
Niben101Scf02798g05017.1			Unknown protein		
Niben101Scf07027g01004.1	ref|XP_007046424.1|	*-*-	Vacuolar iron transporter family protein, putative [Theobroma cacao] gb|EOX90581.1| Vacuolar iron transporter family protein, putative [Theobroma cacao]		
Niben101Scf02302g00006.1	AT5G22460.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=340	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05625g00006.1	AT3G22810.1	***-	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region LENGTH=472	IPR008546 (Domain of unknown function DUF828), IPR011993 (Pleckstrin homology-like domain), IPR013666 (Pleckstrin-like, plant)	
Niben101Scf01927g05020.1	sp|A1SQW6|SYR_PSYIN	****	Arginine--tRNA ligase	IPR001278 (Arginine-tRNA ligase)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004814 (arginine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006420 (arginyl-tRNA aminoacylation)
Niben101Scf06969g01021.1	sp|P38011|GBLP_YEAST	****	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf06822g04004.1	sp|Q39204|MYC2_ARATH	***-	Transcription factor MYC2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf15568g00020.1	sp|Q0ATQ2|TSAD_MARMM	***-	tRNA N6-adenosine threonylcarbamoyltransferase	IPR000905 (Gcp-like domain), IPR017861 (Kae1/YgjD family)	
Niben101Scf00059g04016.1	AT3G53560.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=340	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02182g00004.1			Unknown protein		
Niben101Scf07738g00003.1	gb|KEH39256.1|	--*-	F-box/FBD/LRR protein [Medicago truncatula]		
Niben101Scf03437g01027.1	sp|Q9JI10|STK3_MOUSE	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02995g00002.1	sp|Q5HB43|SYI_EHRRW	****	Isoleucine--tRNA ligase	IPR002301 (Isoleucine-tRNA ligase), IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)	GO:0000166 (nucleotide binding), GO:0002161 (aminoacyl-tRNA editing activity), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004822 (isoleucine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006428 (isoleucyl-tRNA aminoacylation)
Niben101Scf04007g00006.1	ref|NP_001051957.1|	***-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf04980g00027.1	gb|AIE42546.1|	*-*-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf16148g00008.1	ref|XP_003626920.1|	-**-	GRF zinc finger containing protein [Medicago truncatula]		
Niben101Scf01934g01001.1	AT4G16160.2	***-	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein LENGTH=178	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Scf02786g03019.1	sp|Q9P3W1|T2EA_SCHPO	****	Transcription initiation factor IIE subunit alpha	IPR002853 (Transcription factor TFIIE, alpha subunit), IPR024550 (TFIIEalpha/SarR/Rpc3 HTH domain)	GO:0006367 (transcription initiation from RNA polymerase II promoter), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03191g01013.1	AT3G06120.1	***-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=202	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf15963g02007.1	sp|Q9VP22|CDK12_DROME	*-**	Cyclin-dependent kinase 12	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03855g03007.1	sp|Q9ULK2|AT7L1_HUMAN	--*-	Ataxin-7-like protein 1		
Niben101Scf01143g09002.1	sp|Q8WZ60|KLHL6_HUMAN	*-*-	Kelch-like protein 6	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf05694g00002.1	sp|Q9FXA2|PABP8_ARATH	*-**	Polyadenylate-binding protein 8	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf19434g00001.1	AT2G42850.1	***-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02618g00001.1	AT5G19010.1	****	mitogen-activated protein kinase 16 LENGTH=567	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01627g02011.1	sp|Q84V83|LAR_DESUN	***-	Leucoanthocyanidin reductase	IPR008030 (NmrA-like domain)	
Niben101Scf07552g00001.1	sp|Q9SYZ7|U496A_ARATH	***-	UPF0496 protein	IPR007749 (Protein of unknown function DUF677)	
Niben101Scf02486g01010.1	sp|Q6I544|GL52_ORYSJ	***-	Germin-like protein 5-1	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf00231g06013.1	AT1G70570.2	*-*-	anthranilate phosphoribosyltransferase, putative LENGTH=632	IPR000312 (Glycosyl transferase, family 3)	GO:0008152 (metabolic process), GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf04624g00010.1			Unknown protein		
Niben101Scf02237g09010.1	sp|Q501G6|CSPLY_ARATH	*-*-	CASP-like protein 4A2	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf08936g03003.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf02971g00016.1			Unknown protein		
Niben101Scf02182g16013.1	gb|KEH32758.1|	*-*-	Non-lysosomal glucosylceramidase [Medicago truncatula]		
Niben101Scf00238g02005.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf12024g00012.1			Unknown protein		
Niben101Scf01685g06002.1	sp|Q9FL53|FLA21_ARATH	***-	Fasciclin-like arabinogalactan protein 21	IPR000782 (FAS1 domain)	
Niben101Scf02837g01017.1	sp|P93026|VSR1_ARATH	***-	Vacuolar-sorting receptor 1	IPR001881 (EGF-like calcium-binding domain), IPR003137 (Protease-associated domain, PA), IPR026823 (Complement Clr-like EGF domain)	GO:0005509 (calcium ion binding)
Niben101Scf01155g05013.1	gb|AAU90304.1|	--*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf00693g00011.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02895g04009.1	ref|XP_002511918.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF50587.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04610g05007.1			Unknown protein		
Niben101Scf02565g00010.1	sp|Q93ZR6|WSD1_ARATH	****	O-acyltransferase WSD1	IPR009721 (O-acyltransferase, WSD1, C-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity)
Niben101Scf02972g08002.1	AT4G24130.1	***-	Protein of unknown function, DUF538 LENGTH=157	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf03267g00076.1	sp|P25312|COX2_HYLSY	*-**	Cytochrome c oxidase subunit 2	IPR008972 (Cupredoxin)	GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0016020 (membrane)
Niben101Scf08034g00007.1	AT3G52525.1	*-*-	ovate family protein 6 LENGTH=159	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf04967g00002.1	AT5G65550.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=466	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02289g04001.1			Unknown protein		
Niben101Scf14778g00017.1			Unknown protein		
Niben101Scf06458g00009.1	emb|CDY64575.1|	*-*-	BnaCnng44110D [Brassica napus]		
Niben101Scf02354g05004.1	AT5G25752.1	*-*-	rhomboid-like protein 11 LENGTH=280	IPR002610 (Peptidase S54, rhomboid)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf01352g02011.1	sp|P51104|DFRA_DIACA	*-*-	Dihydroflavonol-4-reductase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf12383g01015.1			Unknown protein		
Niben101Scf08643g00004.1	sp|P40690|ALKE_BABBO	-**-	Aldo-keto reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf02293g03019.1	AT1G55620.2	*-**	chloride channel F LENGTH=781	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf11214g00006.1	sp|Q8CCA0|DCNL4_MOUSE	***-	DCN1-like protein 4	IPR014764 (Defective-in-cullin neddylation protein)	
Niben101Scf00675g03013.1	ref|XP_003617887.1|	*-*-	Kinesin-4 [Medicago truncatula]		
Niben101Scf02601g03007.1	AT2G33320.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=602	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01999g07005.1	gb|KEJ97101.1|	***-	ubiquinol-cytochrome C reductase [Sulfitobacter sp. H3]	IPR015947 (PUA-like domain)	
Niben101Scf02908g05002.1	sp|O18640|GBLP_DROME	--**	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Ctg15819g00003.1	sp|Q2UCP5|XRN2_ASPOR	--*-	5'-3' exoribonuclease 2	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Ctg09801g00001.1			Unknown protein		
Niben101Scf30092g00006.1	AT3G60390.1	***-	homeobox-leucine zipper protein 3 LENGTH=315	IPR003106 (Leucine zipper, homeobox-associated), IPR006712 (HD-ZIP protein, N-terminal), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00988g04020.1	sp|Q8BYH8|CHD9_MOUSE	*-*-	Chromodomain-helicase-DNA-binding protein 9	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf05211g02008.1	AT4G22770.1	****	AT hook motif DNA-binding family protein LENGTH=334	IPR005175 (Domain of unknown function DUF296), IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Scf05201g08006.1	sp|Q9LVQ5|PP432_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05231g01014.1	AT4G15802.1	***-	heat shock factor binding protein LENGTH=86	IPR009643 (Heat shock factor binding 1)	
Niben101Scf06091g06016.1	sp|Q044A8|DNAJ_LACGA	***-	Chaperone protein DnaJ	IPR012724 (Chaperone DnaJ)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0009408 (response to heat), GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf02972g04001.1	AT1G64530.1	***-	Plant regulator RWP-RK family protein LENGTH=841	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain)	GO:0005515 (protein binding)
Niben101Scf06583g04001.1	sp|O80800|ACPM2_ARATH	***-	Acyl carrier protein 2, mitochondrial		
Niben101Scf00381g05003.1	sp|Q9QYK7|RNF11_MOUSE	*-*-	RING finger protein 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01272g00004.1	ref|XP_002518781.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF43706.1| DNA binding protein, putative [Ricinus communis]	IPR007930 (Protein of unknown function DUF724), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf02709g03031.1	AT3G62450.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=74		
Niben101Scf01859g06001.1	sp|Q5E9R2|PLCD_BOVIN	*-**	1-acyl-sn-glycerol-3-phosphate acyltransferase delta	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf04319g04016.1			Unknown protein		
Niben101Scf00961g03017.1	sp|Q9LYD9|EMF1_ARATH	*-*-	Protein EMBRYONIC FLOWER 1		
Niben101Scf09112g03006.1	sp|P49039|SUS2_SOLTU	****	Sucrose synthase	IPR000368 (Sucrose synthase)	GO:0005985 (sucrose metabolic process)
Niben101Scf05559g02012.1	AT4G02790.1	****	GTP-binding family protein LENGTH=372	IPR019991 (GTP-binding protein, ribosome biogenesis, YlqF), IPR023179 (GTP-binding protein, orthogonal bundle domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00207g04007.1	sp|Q8VZU2|SY132_ARATH	***-	Syntaxin-132	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf04292g01006.1	AT4G00005.1	*-*-	PRA1 (Prenylated rab acceptor) family protein LENGTH=118	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf08991g00005.1			Unknown protein		
Niben101Scf09028g00004.1	AT1G18280.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=180	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00274g03008.1	sp|Q9T0H2|SMAP1_ARATH	--*-	Small acidic protein 1		
Niben101Scf00474g11008.1	dbj|BAA21017.1|	****	DNA-binding protein [Daucus carota]	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07687g02008.1	sp|P27061|PPA1_SOLLC	****	Acid phosphatase 1	IPR005519 (Acid phosphatase (Class B)), IPR023214 (HAD-like domain)	GO:0003993 (acid phosphatase activity)
Niben101Scf06688g00001.1			Unknown protein		
Niben101Scf00563g01010.1	sp|Q556Z3|TPC10_DICDI	--*-	Trafficking protein particle complex subunit 10		
Niben101Scf09684g00004.1	sp|Q39766|PGLR_GOSBA	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03634g12009.1	sp|Q56Y85|MAP22_ARATH	****	Methionine aminopeptidase 2B	IPR000994 (Peptidase M24, structural domain), IPR001714 (Peptidase M24, methionine aminopeptidase), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0004177 (aminopeptidase activity), GO:0006508 (proteolysis), GO:0008235 (metalloexopeptidase activity)
Niben101Scf20283g01005.1	gb|KEH28697.1|	*-*-	lactoylglutathione lyase/glyoxalase I family protein [Medicago truncatula]	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf06641g01005.1	sp|Q9H0A0|NAT10_HUMAN	****	N-acetyltransferase 10	IPR000182 (GNAT domain), IPR007807 (Helicase domain), IPR013562 (Domain of unknown function DUF1726), IPR027992 (Possible tRNA binding domain)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf01377g02001.1	AT4G32520.1	****	serine hydroxymethyltransferase 3 LENGTH=529	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf24155g00014.1	ref|XP_002875323.1|	****	binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH51582.1| binding protein [Arabidopsis lyrata subsp. lyrata]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00377g02008.1	sp|O23237|PER49_ARATH	*-**	Peroxidase 49	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01350g04022.1	sp|O60337|MARH6_HUMAN	*-*-	E3 ubiquitin-protein ligase MARCH6		
Niben101Scf04722g04012.1	AT5G01460.1	***-	LMBR1-like membrane protein LENGTH=509	IPR006876 (LMBR1-like membrane protein)	
Niben101Scf01339g02015.1			Unknown protein		
Niben101Scf06423g01019.1	sp|Q84W66|NFYB6_ARATH	*-**	Nuclear transcription factor Y subunit B-6	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf04981g00007.1			Unknown protein		
Niben101Scf08965g00003.1	sp|Q8VYM0|ERF93_ARATH	*-**	Ethylene-responsive transcription factor 15	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01607g04002.1	sp|Q9C7U5|E132_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 2	IPR012946 (X8 domain)	
Niben101Scf00445g02003.1	sp|Q9JL56|GDE1_MOUSE	--*-	Glycerophosphodiester phosphodiesterase 1	IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain)	GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Ctg05805g00003.1	sp|Q00624|ASOL_BRANA	*-*-	L-ascorbate oxidase homolog	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08774g00012.1	sp|Q7U4J2|RL29_SYNPX	-**-	50S ribosomal protein L29	IPR001854 (Ribosomal protein L29)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf13146g00001.1	sp|Q9YRV3|POLG_YEFVT	--*-	Genome polyprotein		
Niben101Scf07034g07006.1	sp|Q9FH57|GATA5_ARATH	****	GATA transcription factor 5	IPR016679 (Transcription factor, GATA, plant)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding), GO:0045893 (positive regulation of transcription, DNA-templated)
Niben101Scf10919g01010.1	ref|XP_003607074.1|	--*-	3-oxo-5-alpha-steroid 4-dehydrogenase [Medicago truncatula]		
Niben101Scf04731g05004.1	sp|P13674|P4HA1_HUMAN	--*-	Prolyl 4-hydroxylase subunit alpha-1		
Niben101Scf02452g01003.1	sp|A3CT12|RS8_METMJ	***-	30S ribosomal protein S8	IPR000630 (Ribosomal protein S8)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00643g01003.1	sp|Q96NW7|LRRC7_HUMAN	--*-	Leucine-rich repeat-containing protein 7		
Niben101Scf03929g03001.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf10540g00002.1	sp|Q6YW46|EF1G2_ORYSJ	****	Elongation factor 1-gamma 2	IPR001662 (Translation elongation factor EF1B, gamma chain, conserved), IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0003746 (translation elongation factor activity), GO:0005515 (protein binding), GO:0006414 (translational elongation)
Niben101Scf09782g00002.1	sp|P16924|P4HA1_CHICK	*-*-	Prolyl 4-hydroxylase subunit alpha-1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13196g00001.1	ref|XP_003637074.1|	*-*-	Cell wall-associated hydrolase, partial [Medicago truncatula]		
Niben101Scf00254g08009.1	sp|Q54C25|GPN1_DICDI	****	GPN-loop GTPase 1	IPR004130 (GPN-loop GTPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity)
Niben101Scf00519g00010.1	sp|P74061|RPE_SYNY3	****	Ribulose-phosphate 3-epimerase	IPR000056 (Ribulose-phosphate 3-epimerase-like), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0008152 (metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives)
Niben101Scf08230g00026.1	sp|O82200|MIOX2_ARATH	****	Inositol oxygenase 2	IPR007828 (Inositol oxygenase)	GO:0005506 (iron ion binding), GO:0005737 (cytoplasm), GO:0019310 (inositol catabolic process), GO:0050113 (inositol oxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01382g05009.1	AT3G18430.1	****	Calcium-binding EF-hand family protein LENGTH=175	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00920g04006.1	gb|KEH21925.1|	***-	NHL repeat protein [Medicago truncatula]	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0005515 (protein binding)
Niben101Scf08692g00001.1			Unknown protein		
Niben101Scf16178g00008.1	sp|A6ZXP4|SUB2_YEAS7	*-**	ATP-dependent RNA helicase SUB2	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf07227g02005.1	sp|Q9NY61|AATF_HUMAN	*-*-	Protein AATF	IPR025160 (AATF leucine zipper-containing domain)	
Niben101Scf00994g07009.1			Unknown protein		
Niben101Scf01851g01002.1	emb|CCA15153.1|	*-*-	conserved hypothetical protein [Albugo laibachii Nc14]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf04114g02036.1	gb|ADV15959.1|	*-*-	maturase, partial (mitochondrion) [Montinia caryophyllacea]		
Niben101Scf01326g01013.1	sp|Q9VUQ8|DCN1L_DROME	*-*-	DCN1-like protein	IPR014764 (Defective-in-cullin neddylation protein)	
Niben101Scf01326g05008.1	sp|P11139|TBA1_ARATH	***-	Tubulin alpha-1 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf11490g00001.1			Unknown protein		
Niben101Scf03114g08006.1	sp|Q8W110|FRO4_ARATH	****	Ferric reduction oxidase 4	IPR013121 (Ferric reductase, NAD binding), IPR017927 (Ferredoxin reductase-type FAD-binding domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf15635g00001.1	sp|P54772|DCHS_SOLLC	*-*-	Histidine decarboxylase	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf17538g00004.1	sp|Q9FJR0|RENT1_ARATH	*-*-	Regulator of nonsense transcripts 1 homolog		
Niben101Scf03991g01002.1	sp|Q9ZQW8|U2AFA_ORYSJ	***-	Splicing factor U2af small subunit A	IPR009145 (U2 auxiliary factor small subunit), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0046872 (metal ion binding)
Niben101Scf06506g00001.1	sp|A4VKA3|FADB_PSEU5	****	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0003857 (3-hydroxyacyl-CoA dehydrogenase activity), GO:0006631 (fatty acid metabolic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00854g00046.1			Unknown protein		
Niben101Scf00437g00015.1	sp|Q9LQ16|PPR94_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07188g02011.1	sp|B3H4F1|SP1L1_ARATH	***-	Protein SPIRAL1-like 1		
Niben101Scf13411g05021.1	sp|Q7DM39|PSBP1_TOBAC	****	Oxygen-evolving enhancer protein 2-1, chloroplastic	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf00088g01012.1	emb|CDX94052.1|	***-	BnaC07g36860D [Brassica napus]		
Niben101Scf19248g00007.1	AT5G10240.1	*-*-	asparagine synthetase 3 LENGTH=578		
Niben101Scf02507g03001.1	AT4G03520.1	*-*-	Thioredoxin superfamily protein LENGTH=186	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0006662 (glycerol ether metabolic process), GO:0008270 (zinc ion binding), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01787g00030.1			Unknown protein		
Niben101Scf02793g21008.1	AT2G42070.1	****	nudix hydrolase homolog 23 LENGTH=280	IPR015797 (NUDIX hydrolase domain-like), IPR029401 (Nudix hydrolase, N-terminal)	GO:0016787 (hydrolase activity)
Niben101Ctg15125g00004.1	sp|Q9ZU11|ATB15_ARATH	--*-	Homeobox-leucine zipper protein ATHB-15		
Niben101Scf09107g00005.1			Unknown protein		
Niben101Scf21231g00001.1	sp|P0CC50|NU2C1_CUCSA	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf10776g00019.1			Unknown protein		
Niben101Ctg10877g00003.1	AT1G54150.1	*-**	E3 Ubiquitin ligase family protein LENGTH=383	IPR022170 (Mitochondrial ubiquitin ligase activator of NFKB 1)	GO:0004842 (ubiquitin-protein transferase activity), GO:0007005 (mitochondrion organization)
Niben101Scf11631g00005.1	sp|Q5ZJL8|ABHDD_CHICK	*-*-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01305g00007.1	ref|XP_002535856.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00988g02018.1	AT2G30460.1	*-*-	Nucleotide/sugar transporter family protein LENGTH=353		
Niben101Scf15260g01005.1	sp|Q940G0|TMN1_ARATH	***-	Transmembrane 9 superfamily member 1	IPR003690 (Mitochodrial transcription termination factor), IPR004240 (Nonaspanin (TM9SF))	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated), GO:0016021 (integral component of membrane)
Niben101Scf05481g00006.1	sp|A1URA3|FTSH_BARBK	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR011546 (Peptidase M41, FtsH extracellular), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding), GO:0016021 (integral component of membrane)
Niben101Scf00820g05003.1	AT4G39970.1	***-	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=316	IPR023214 (HAD-like domain)	
Niben101Scf00593g04018.1	AT1G18850.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 40 Blast hits to 40 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=399		
Niben101Scf02429g05009.1	sp|Q8N9T8|KRI1_HUMAN	*-*-	Protein KRI1 homolog	IPR018034 (KRR1 interacting protein 1), IPR024626 (Kri1-like, C-terminal)	
Niben101Scf03004g00002.1	sp|Q38840|AGL17_ARATH	--*-	Agamous-like MADS-box protein AGL17		
Niben101Scf01037g02006.1	sp|O23044|PER3_ARATH	****	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10386g00003.1	sp|Q10D38|MRS2I_ORYSJ	****	Magnesium transporter MRS2-I	IPR002523 (Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB), IPR026573 (Magnesium transporter MRS2/LPE10)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf06493g00024.1	sp|P19963|ALL1_OLEEU	--*-	Major pollen allergen Ole e 1	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf00152g18002.1	AT4G38900.1	****	Basic-leucine zipper (bZIP) transcription factor family protein LENGTH=553	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07386g00004.1	AT4G11560.1	***-	bromo-adjacent homology (BAH) domain-containing protein LENGTH=587	IPR001025 (Bromo adjacent homology (BAH) domain), IPR003618 (Transcription elongation factor S-II, central domain)	GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf10490g00012.1	AT1G75460.1	*-**	ATP-dependent protease La (LON) domain protein LENGTH=278	IPR003111 (Peptidase S16, lon N-terminal), IPR015947 (PUA-like domain)	GO:0004176 (ATP-dependent peptidase activity), GO:0006508 (proteolysis)
Niben101Scf03804g02003.1	sp|B6EHH0|PTH_ALISL	--*-	Peptidyl-tRNA hydrolase	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03255g02003.1	gb|AAM18455.1|	*-*-	maturase, partial (mitochondrion) [Roridula gorgonias]		
Niben101Scf02837g05006.1	AT3G59920.1	****	RAB GDP dissociation inhibitor 2 LENGTH=444	IPR018203 (GDP dissociation inhibitor)	GO:0005093 (Rab GDP-dissociation inhibitor activity), GO:0015031 (protein transport)
Niben101Scf03503g01006.1	sp|Q6Z4I3|TRH21_ORYSJ	*-*-	Thioredoxin H2-1	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02042g02002.1	sp|O82248|NFYB5_ARATH	****	Nuclear transcription factor Y subunit B-5	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf06906g01008.1	emb|CDX89516.1|	*-*-	BnaC04g35350D [Brassica napus]		
Niben101Scf00163g23024.1	AT5G51180.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=357		
Niben101Scf03474g01001.1	sp|Q9LHF0|ZHD9_ARATH	***-	Zinc-finger homeodomain protein 9	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf10369g01017.1	gb|KEH43820.1|	*-*-	kinase interacting (KIP1-like) family protein [Medicago truncatula]		
Niben101Scf02618g02006.1	emb|CDY68159.1|	***-	BnaA07g38920D [Brassica napus]		
Niben101Scf01820g00026.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00801g03002.1	sp|Q9LDH1|SIB1_ARATH	--*-	Sigma factor binding protein 1, chloroplastic	IPR008889 (VQ)	
Niben101Scf07157g00004.1	AT4G34760.1	***-	SAUR-like auxin-responsive protein family LENGTH=107	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf04995g07023.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Ctg04867g00002.1	AT1G27190.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=601	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Scf01267g11012.1	sp|Q9C5S9|CRK6_ARATH	*-**	Cysteine-rich receptor-like protein kinase 6	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11384g00016.1	sp|O49595|HMGB1_ARATH	*-*-	High mobility group B protein 1	IPR009071 (High mobility group box domain)	
Niben101Scf08054g00024.1	sp|P0DM58|DI3L2_ARATH	***-	DIS3-like exonuclease 2	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf06772g00007.1	sp|Q9ZR07|FRDA_ARATH	*-*-	Frataxin, mitochondrial	IPR002908 (Frataxin/CyaY)	GO:0008199 (ferric iron binding), GO:0016226 (iron-sulfur cluster assembly)
Niben101Scf07123g00008.1	sp|P33731|SRP72_CANFA	*-**	Signal recognition particle subunit SRP72	IPR011990 (Tetratricopeptide-like helical domain), IPR013699 (Signal recognition particle, SRP72 subunit, RNA-binding), IPR026270 (Signal recognition particle, SRP72 subunit)	GO:0005515 (protein binding), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0048500 (signal recognition particle)
Niben101Scf02537g02007.1	sp|P69039|IF5A1_NICPL	*-*-	Eukaryotic translation initiation factor 5A-1	IPR014722 (Ribosomal protein L2 domain 2)	
Niben101Scf06305g04003.1	gb|AAX38236.1|	*-**	strictosidine synthase family protein [Brassica napus]	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf05063g04006.1	sp|P13869|CB12_PETHY	***-	Chlorophyll a-b binding protein, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf01237g09003.1	sp|Q9M5P8|SNAA_SOLTU	***-	Alpha-soluble NSF attachment protein	IPR000744 (NSF attachment protein), IPR001252 (Malate dehydrogenase, active site)	GO:0005515 (protein binding), GO:0006108 (malate metabolic process), GO:0006886 (intracellular protein transport), GO:0016615 (malate dehydrogenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07854g01011.1	ref|XP_007016521.1|	***-	Domain of Uncharacterized protein function, putative [Theobroma cacao] gb|EOY34140.1| Domain of Uncharacterized protein function, putative [Theobroma cacao]	IPR010369 (Protein of unknown function DUF966)	
Niben101Scf02929g00054.1	emb|CDY70488.1|	*-*-	BnaUnng03880D, partial [Brassica napus]		
Niben101Ctg15476g00004.1	gb|KEH33297.1|	***-	YGL010w-like protein [Medicago truncatula]	IPR009305 (Protein of unknown function DUF962)	
Niben101Scf02668g01015.1	sp|Q9LSL9|PP445_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00466g03005.1	sp|Q940M2|AGT21_ARATH	--*-	Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial	IPR015421 (Pyridoxal phosphate-dependent transferase, major region, subdomain 1)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf04509g02012.1	sp|B8I7X9|RL3_CLOCE	***-	50S ribosomal protein L3	IPR000597 (Ribosomal protein L3), IPR009000 (Translation protein, beta-barrel domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03990g02015.1	ref|XP_002525171.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37137.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00710g00002.1	sp|Q6UDI2|TERL_PSHV1	--*-	Large terminase protein		
Niben101Scf02763g00016.1	sp|Q9SYG9|CCX4_ARATH	***-	Cation/calcium exchanger 4	IPR004837 (Sodium/calcium exchanger membrane region)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf05166g01006.1	sp|P46903|NATA_BACSU	*-**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR026082 (ABC transporter A, ABCA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005215 (transporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity)
Niben101Scf02508g03006.1	gb|AAO72706.1|	*-*-	heavy meromyosin-like protein [Oryza sativa Japonica Group]		
Niben101Scf09523g01010.1	AT1G05840.1	***-	Eukaryotic aspartyl protease family protein LENGTH=485	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02115g05003.1	sp|Q8N5A5|ZGPAT_HUMAN	*-*-	Zinc finger CCCH-type with G patch domain-containing protein	IPR000467 (G-patch domain), IPR000571 (Zinc finger, CCCH-type)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01942g03008.1	gb|AES75256.2|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf09548g00009.1	gb|KEH37083.1|	***-	S-adenosyl-L-methionine-dependent methyltransferase, putative [Medicago truncatula]		
Niben101Scf04488g00027.1	gb|KFO21987.1|	***-	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit [Fukomys damarensis]	IPR011990 (Tetratricopeptide-like helical domain), IPR029489 (O-GlcNAc transferase, C-terminal)	GO:0005515 (protein binding)
Niben101Scf07182g00020.1	AT2G34860.1	***-	DnaJ/Hsp40 cysteine-rich domain superfamily protein LENGTH=186		
Niben101Scf03116g04007.1	sp|B1B5D5|NNJA3_WHEAT	***-	Ninja-family protein 3	IPR012463 (Ninja)	
Niben101Scf03076g02006.1	sp|Q9LYT2|PP287_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf09116g04020.1	sp|Q556Y4|KC1_DICDI	****	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03426g01010.1	sp|Q3EDF8|PPR28_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04418g13013.1	emb|CDY07988.1|	***-	BnaC03g35350D [Brassica napus]	IPR022228 (Protein of unknown function DUF3755)	
Niben101Scf07250g00011.1			Unknown protein		
Niben101Scf07935g01001.1			Unknown protein		
Niben101Ctg15206g00001.1	AT1G50450.1	*-*-	Saccharopine dehydrogenase LENGTH=428		
Niben101Scf01927g05021.1	sp|Q9FJU9|E1313_ARATH	***-	Glucan endo-1,3-beta-glucosidase 13	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00120g02008.1	AT5G53750.1	***-	CBS domain-containing protein LENGTH=408	IPR000644 (CBS domain)	
Niben101Scf05782g00006.1	AT3G08590.1	****	Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent LENGTH=560	IPR005995 (Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent)	GO:0003824 (catalytic activity), GO:0004619 (phosphoglycerate mutase activity), GO:0005737 (cytoplasm), GO:0006007 (glucose catabolic process), GO:0008152 (metabolic process), GO:0030145 (manganese ion binding), GO:0046872 (metal ion binding)
Niben101Scf02250g00006.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf11084g00011.1	sp|Q9HDW7|ATC2_SCHPO	****	Calcium-transporting ATPase 2	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain), IPR024750 (Calcium-transporting P-type ATPase, N-terminal autoinhibitory domain)	GO:0000166 (nucleotide binding), GO:0005388 (calcium-transporting ATPase activity), GO:0005516 (calmodulin binding), GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding), GO:0070588 (calcium ion transmembrane transport)
Niben101Scf00982g04002.1	sp|Q3KBH4|POTA_PSEPF	*-**	Spermidine/putrescine import ATP-binding protein PotA	IPR003439 (ABC transporter-like), IPR003959 (ATPase, AAA-type, core), IPR026082 (ABC transporter A, ABCA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005215 (transporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity)
Niben101Scf00286g04003.1	ref|NP_001184924.1|	*-*-	P-loop containing nucle [Arabidopsis thaliana]		
Niben101Scf02243g01031.1	emb|CCF51855.1|	*-**	related to ATP-binding cassette (ABC) transporter [Ustilago hordei]	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf12662g00013.1	AT3G22210.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=69		
Niben101Scf04433g01007.1	AT1G54150.1	*-*-	E3 Ubiquitin ligase family protein LENGTH=383	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08445g02017.1	ref|NP_063977.1|	*-*-	orf146 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] ref|YP_004222306.1| hypothetical protein BevumaM_p071 [Beta vulgaris subsp. maritima] dbj|BAA99289.1| orf146 [Beta vulgaris subsp. vulgaris] emb|CBJ14042.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBJ17533.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBL54124.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp. maritima]		
Niben101Scf02602g00001.1	AT4G03520.1	***-	Thioredoxin superfamily protein LENGTH=186	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03143g09004.1			Unknown protein		
Niben101Scf05562g00003.1	sp|O23609|PER41_ARATH	****	Peroxidase 41	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05846g00005.1			Unknown protein		
Niben101Scf02164g05001.1	gb|ACG40676.1|	***-	p8MTCP1 [Zea mays]	IPR009069 (Cysteine alpha-hairpin motif superfamily), IPR010625 (CHCH)	
Niben101Scf09133g01003.1	sp|Q7F8R0|C3H14_ORYSJ	*-*-	Zinc finger CCCH domain-containing protein 14	IPR000571 (Zinc finger, CCCH-type), IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0046872 (metal ion binding)
Niben101Scf01958g02015.1	sp|Q41916|CYT5_ARATH	****	Cysteine proteinase inhibitor 5	IPR000010 (Proteinase inhibitor I25, cystatin), IPR027214 (Cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf01734g01062.1	AT3G07500.1	***-	Far-red impaired responsive (FAR1) family protein LENGTH=217	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf00899g01003.1			Unknown protein		
Niben101Scf04703g09005.1	sp|O49046|ARGI_SOYBN	***-	Arginase	IPR006035 (Ureohydrolase), IPR023696 (Ureohydrolase domain)	GO:0016813 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines), GO:0046872 (metal ion binding)
Niben101Scf01163g00003.1	AT2G44020.1	*-**	Mitochondrial transcription termination factor family protein LENGTH=507	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06091g02013.1	emb|CDY52858.1|	*-*-	BnaA09g56500D [Brassica napus]		
Niben101Scf15067g03002.1	AT1G01730.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=224		
Niben101Scf06736g00002.1	emb|CDY54561.1|	***-	BnaA08g30410D [Brassica napus]		
Niben101Scf04690g02008.1	AT4G00390.1	*-*-	DNA-binding storekeeper protein-related transcriptional regulator LENGTH=364	IPR007592 (Protein of unknown function DUF573)	
Niben101Scf01764g03020.1			Unknown protein		
Niben101Scf20935g00002.1	sp|Q5KQN0|CAX2_ORYSJ	***-	Vacuolar cation/proton exchanger 2	IPR004837 (Sodium/calcium exchanger membrane region)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03486g02008.1	sp|Q54QC8|SEC1_DICDI	****	Protein transport protein sec1	IPR001619 (Sec1-like protein), IPR027482 (Sec1-like, domain 2)	GO:0006904 (vesicle docking involved in exocytosis), GO:0016192 (vesicle-mediated transport)
Niben101Scf08665g02015.1			Unknown protein		
Niben101Scf00381g08001.1	AT3G51470.1	****	Protein phosphatase 2C family protein LENGTH=361	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf01093g04002.1	AT2G34200.1	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=222	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf03561g01008.1	gb|KEH24544.1|	*-*-	acetyltransferase (GNAT) domain protein [Medicago truncatula]	IPR016181 (Acyl-CoA N-acyltransferase)	
Niben101Scf10950g00006.1	sp|O82485|OPT7_ARATH	*-*-	Oligopeptide transporter 7	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf00574g11010.1	sp|Q8WZY4|RPN8_NEUCR	***-	26S proteasome regulatory subunit rpn-8	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR024969 (Rpn11/EIF3F C-terminal domain)	GO:0005515 (protein binding)
Niben101Scf06117g02001.1	sp|Q8S8I4|EPF1_ARATH	*-*-	Protein EPIDERMAL PATTERNING FACTOR 1		
Niben101Scf01927g02003.1	AT5G06940.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=872	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf12205g01015.1	sp|Q9C7N4|GDL15_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01166g16008.1	sp|Q9FWX2|NAC7_ARATH	*-*-	NAC domain-containing protein 7	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01382g04008.1	sp|P40339|RFC4_YEAST	*-**	Replication factor C subunit 4	IPR012178 (DNA replication factor C, large subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003689 (DNA clamp loader activity), GO:0005524 (ATP binding), GO:0005663 (DNA replication factor C complex), GO:0006260 (DNA replication)
Niben101Scf05993g01025.1	gb|KEH36417.1|	--*-	PHD-finger protein [Medicago truncatula]		
Niben101Scf04103g00004.1	sp|Q9LKJ1|HIBC1_ARATH	***-	3-hydroxyisobutyryl-CoA hydrolase 1	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04315g01009.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf01480g01012.1	sp|Q9SE97|FH1_ARATH	*-*-	Formin-like protein 1	IPR015425 (Formin, FH2 domain)	
Niben101Scf02589g06008.1			Unknown protein		
Niben101Scf01826g01004.1	AT5G50380.1	****	exocyst subunit exo70 family protein F1 LENGTH=683	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Ctg13629g00003.1	sp|Q652P9|GL93_ORYSJ	***-	Germin-like protein 9-3	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf01169g04010.1	sp|P57699|ATKB_HALSA	****	Potassium-transporting ATPase B chain	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0006812 (cation transport), GO:0016021 (integral component of membrane), GO:0019829 (cation-transporting ATPase activity), GO:0046872 (metal ion binding)
Niben101Scf03670g00002.1	sp|Q7NBW0|DNAJ_MYCGA	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf12135g00016.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01942g06002.1	sp|Q08CG8|RNF44_DANRE	--*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01025g13001.1	sp|Q93Y40|ORP3C_ARATH	***-	Oxysterol-binding protein-related protein 3C	IPR000648 (Oxysterol-binding protein)	
Niben101Scf02407g04002.1	sp|P52174|NDKA1_BOVIN	***-	Nucleoside diphosphate kinase A 1	IPR001564 (Nucleoside diphosphate kinase)	
Niben101Scf02522g01017.1	AT3G25840.1	*-**	Protein kinase superfamily protein LENGTH=935	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08199g01006.1	sp|P53470|ACT1_SCHMA	***-	Actin-1	IPR004000 (Actin family)	
Niben101Scf04371g04008.1	sp|Q9SJK3|AGO5_ARATH	***-	Protein argonaute 5	IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf02517g00009.1	AT3G06483.1	***-	pyruvate dehydrogenase kinase LENGTH=366	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR018955 (Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase, N-terminal)	
Niben101Scf06628g00018.1	ref|XP_003588337.1|	*-*-	Ribosomal protein S10 [Medicago truncatula]		
Niben101Scf01085g03003.1	sp|Q9LW48|ERF5_NICSY	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07944g05010.1	sp|P42124|EZ_DROME	*-*-	Histone-lysine N-methyltransferase E(z)	IPR001005 (SANT/Myb domain), IPR001214 (SET domain), IPR025778 (Histone-lysine N-methyltransferase, EZ), IPR026489 (CXC domain)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0031519 (PcG protein complex)
Niben101Scf08874g00002.1	gb|KEH19840.1|	***-	plant/MEB5-like protein [Medicago truncatula]		
Niben101Scf01472g03011.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00901g07009.1	sp|O48652|UVR3_ARATH	****	(6-4)DNA photolyase	IPR005101 (DNA photolyase, FAD-binding/Cryptochrome, C-terminal), IPR006050 (DNA photolyase, N-terminal)	GO:0003913 (DNA photolyase activity), GO:0006281 (DNA repair)
Niben101Scf04334g02001.1	ref|NP_179248.1|	-**-	SAUR-like auxin-responsive protein [Arabidopsis thaliana] gb|AAD26489.1| putative auxin-induced protein [Arabidopsis thaliana] gb|AEC06511.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana]		
Niben101Scf07474g04001.1	sp|B9DHT4|ARIA_ARATH	*-*-	ARM REPEAT PROTEIN INTERACTING WITH ABF2		
Niben101Scf17858g00013.1	sp|Q0WVN5|CSLG3_ARATH	*-**	Cellulose synthase-like protein G3	IPR005150 (Cellulose synthase)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf01543g01002.1	sp|P38735|VMR1_YEAST	****	ABC transporter ATP-binding protein/permease VMR1	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf13393g00004.1	sp|Q7T326|CISD2_DANRE	*-**	CDGSH iron-sulfur domain-containing protein 2	IPR018967 (Iron sulphur-containing domain, CDGSH-type)	GO:0043231 (intracellular membrane-bounded organelle), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf01604g00002.1	sp|Q9LSQ4|GH36_ARATH	***-	Indole-3-acetic acid-amido synthetase GH3.6	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf00766g00005.1	sp|Q9LIN2|GDL53_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00520g09001.1	sp|Q9Z2W1|STK25_MOUSE	*-**	Serine/threonine-protein kinase 25	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08446g02002.1	sp|Q11SV1|GPMA_CYTH3	***-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf06467g01006.1	sp|Q42430|ZFP1_WHEAT	***-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf00189g06009.1			Unknown protein		
Niben101Scf03099g00009.1	sp|Q9S7B2|RS2_MAIZE	--*-	Protein rough sheath 2		
Niben101Scf00272g07005.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01209g02014.1	sp|Q85FZ0|ACP_CYAME	***-	Acyl carrier protein	IPR003231 (Acyl carrier protein (ACP)), IPR009081 (Acyl carrier protein-like)	GO:0006633 (fatty acid biosynthetic process)
Niben101Scf00669g00008.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02869g02012.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf02638g03003.1	sp|Q9SIT5|CHX15_ARATH	****	Cation/H(+) antiporter 15	IPR006153 (Cation/H+ exchanger), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00776g04004.1	sp|Q501D5|MCMBP_ARATH	***-	Mini-chromosome maintenance complex-binding protein	IPR019140 (Mini-chromosome maintenance complex-binding protein)	
Niben101Scf01517g06010.1	sp|P46417|GSTX3_SOYBN	***-	Glutathione S-transferase 3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	
Niben101Scf03969g06008.1	gb|AEZ02541.1|	*-*-	shattering 4, partial [Oryza rufipogon]	IPR017877 (Myb-like domain)	
Niben101Scf06919g00018.1	AT3G07480.1	*-*-	2Fe-2S ferredoxin-like superfamily protein LENGTH=159	IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf03478g00008.1	sp|A6LJ63|DNAJ_THEM4	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf01847g03004.1	sp|P14851|PPIA_CRIGR	****	Peptidyl-prolyl cis-trans isomerase A	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf20904g00015.1	gb|KEH18300.1|	--*-	F-box/FBD-like domain protein, putative [Medicago truncatula]		
Niben101Scf03048g01018.1	AT2G33420.1	***-	Protein of unknown function (DUF810) LENGTH=1039	IPR008528 (Protein of unknown function DUF810)	
Niben101Scf04730g01021.1	emb|CDX70091.1|	***-	BnaA10g24400D [Brassica napus]	IPR007656 (Zein-binding domain)	
Niben101Scf04796g00020.1	AT4G17240.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: Archae - 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). LENGTH=343		
Niben101Scf05536g01010.1	AT5G66310.1	*-**	ATP binding microtubule motor family protein LENGTH=1063	IPR001752 (Kinesin motor domain), IPR021881 (Protein of unknown function DUF3490), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00612g01005.1	sp|Q9XGX1|CHS7_SORBI	***-	Chalcone synthase 7	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0009058 (biosynthetic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf02145g11013.1	sp|O65399|E131_ARATH	***-	Glucan endo-1,3-beta-glucosidase 1	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00963g02028.1	emb|CDY12195.1|	***-	BnaC04g12250D [Brassica napus]	IPR010471 (Protein of unknown function DUF1068)	
Niben101Scf03445g03008.1	sp|Q6GQ69|FAF2B_XENLA	*-*-	FAS-associated factor 2-B	IPR006577 (UAS), IPR012336 (Thioredoxin-like fold), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf03108g06004.1			Unknown protein		
Niben101Scf08364g00011.1	sp|F4HPR5|DRP5A_ARATH	***-	Dynamin-related protein 5A	IPR001401 (Dynamin, GTPase domain), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf04832g02003.1	sp|P42041|ALDH_ALTAL	*-*-	Aldehyde dehydrogenase	IPR015657 (Aminobutyraldehyde dehydrogenase), IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01240g10025.1	AT3G25910.1	***-	Protein of unknown function (DUF1644) LENGTH=372	IPR012866 (Protein of unknown function DUF1644), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf08767g00003.1	AT5G16990.1	****	Zinc-binding dehydrogenase family protein LENGTH=343	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01219g06025.1	AT3G23530.1	***-	Cyclopropane-fatty-acyl-phospholipid synthase LENGTH=867	IPR003333 (Mycolic acid cyclopropane synthase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008610 (lipid biosynthetic process)
Niben101Scf14538g00004.1	sp|Q08046|EF1A_GIAIN	*-*-	Elongation factor 1-alpha	IPR001876 (Zinc finger, RanBP2-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008270 (zinc ion binding)
Niben101Scf02063g03016.1	AT4G14410.1	*-*-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=283	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf08627g00009.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf08653g01011.1	AT3G18180.1	***-	Glycosyltransferase family 61 protein LENGTH=470	IPR007657 (Glycosyltransferase AER61, uncharacterised)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf06869g02005.1			Unknown protein		
Niben101Scf03377g05004.1	sp|O35250|EXOC7_MOUSE	*-**	Exocyst complex component 7	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Ctg13101g00001.1	gb|ABA97584.2|	--*-	transposon protein, putative, CACTA, En/Spm sub-class, expressed [Oryza sativa Japonica Group]		
Niben101Scf12289g01029.1	sp|Q69ZF3|GBA2_MOUSE	****	Non-lysosomal glucosylceramidase	IPR014551 (Beta-glucosidase, GBA2 type), IPR024462 (Beta-glucosidase, GBA2 type, N-terminal)	GO:0003824 (catalytic activity), GO:0004348 (glucosylceramidase activity), GO:0006665 (sphingolipid metabolic process), GO:0006680 (glucosylceramide catabolic process), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf18727g00001.1			Unknown protein		
Niben101Scf24718g00004.1	sp|Q6TEP1|F91A1_DANRE	*-*-	Protein FAM91A1	IPR028091 (FAM91, N-terminal domain), IPR028097 (FAM91, C-terminal domain)	
Niben101Scf01899g06004.1	sp|Q99LB2|DHRS4_MOUSE	****	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02107g07004.1	sp|Q0WPW4|ACCO5_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase 5	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00841g00013.1	sp|Q9S7T7|SCC11_ARATH	***-	Sister chromatid cohesion 1 protein 1	IPR006910 (Rad21/Rec8-like protein, N-terminal), IPR023093 (Rad21/Rec8-like protein, C-terminal)	GO:0000228 (nuclear chromosome), GO:0005515 (protein binding)
Niben101Scf04175g00017.1	sp|Q54YW1|ELMOA_DICDI	*-*-	ELMO domain-containing protein A	IPR006816 (Engulfment/cell motility, ELMO)	GO:0005856 (cytoskeleton), GO:0006909 (phagocytosis)
Niben101Scf28100g00001.1	sp|P35292|RAB17_MOUSE	***-	Ras-related protein Rab-17	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf10968g01001.1	ref|XP_003617410.1|	--*-	GDSL esterase/lipase [Medicago truncatula]		
Niben101Scf03282g02006.1	sp|O80831|BAM7_ARATH	*-*-	Beta-amylase 7	IPR008540 (BZR1, transcriptional repressor)	
Niben101Scf09603g04017.1	sp|Q8DLP3|ATPA_THEEB	*-**	ATP synthase subunit alpha	IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf01506g03004.1	AT2G32150.1	****	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=263	IPR006439 (HAD hydrolase, subfamily IA), IPR010237 (Pyrimidine 5-nucleotidase), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf04015g02023.1	ref|XP_003617703.1|	*-*-	Cytochrome P450 [Medicago truncatula]	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02705g00004.1	AT3G59640.1	*-*-	glycine-rich protein LENGTH=246		
Niben101Scf08984g03005.1	AT3G19850.1	***-	Phototropic-responsive NPH3 family protein LENGTH=554	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf02030g02010.1	AT1G52360.2	***-	Coatomer, beta' subunit LENGTH=970	IPR016453 (Coatomer beta' subunit (COPB2))	GO:0005198 (structural molecule activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf01145g01001.1	AT1G31850.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=603	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf03461g01006.1	AT3G11810.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=348		
Niben101Scf05823g00002.1	gb|ABW81177.1|	*-*-	gag non-LTR retrotransposase [Arabidopsis cebennensis]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00956g02001.1	AT5G60800.2	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=302	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf00650g02014.1	sp|Q9M5L0|RL35_EUPES	***-	60S ribosomal protein L35	IPR001854 (Ribosomal protein L29)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02253g14004.1	sp|Q9FL17|PUB40_ARATH	***-	U-box domain-containing protein 40	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf05631g00011.1	AT4G12570.1	*-**	ubiquitin protein ligase 5 LENGTH=873	IPR000569 (HECT)	GO:0004842 (ubiquitin-protein transferase activity)
Niben101Scf18125g00012.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf02111g00012.1	sp|Q8LG10|GAT15_ARATH	****	GATA transcription factor 15	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05211g02007.1	sp|A6U5G1|GLND_SINMW	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf10440g00020.1	AT1G48110.1	***-	evolutionarily conserved C-terminal region 7 LENGTH=639	IPR007275 (YTH domain)	
Niben101Scf24096g00014.1			Unknown protein		
Niben101Scf06087g02005.1	AT5G09820.2	*-*-	Plastid-lipid associated protein PAP / fibrillin family protein LENGTH=273		
Niben101Scf02869g15007.1	gb|KEH34490.1|	*-**	salicylic acid carboxyl methyltransferase [Medicago truncatula]	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf09028g00042.1	sp|Q75GM1|TRXH5_ORYSJ	*-*-	Thioredoxin H5	IPR005746 (Thioredoxin), IPR011990 (Tetratricopeptide-like helical domain), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding), GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00383g04002.1	sp|O24160|TGA21_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03133g00006.1	sp|B9SLR1|Y231_RICCO	*-*-	UPF0392 protein RCOM_0530710	IPR008166 (Domain of unknown function DUF23)	
Niben101Scf02182g00001.1	sp|Q9LZ60|SMR3_ARATH	-**-	Cyclin-dependent protein kinase inhibitor SMR3		
Niben101Scf02452g01002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03021g03026.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00883g03018.1	AT3G49780.1	***-	phytosulfokine 4 precursor LENGTH=79	IPR009438 (Phytosulfokine)	GO:0005576 (extracellular region), GO:0008083 (growth factor activity), GO:0008283 (cell proliferation)
Niben101Scf12017g05029.1	AT4G17410.3	****	DWNN domain, a CCHC-type zinc finger LENGTH=827	IPR001878 (Zinc finger, CCHC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014891 (DWNN domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf13146g00002.1	sp|A0LJ65|PYRH_SYNFM	*-**	Uridylate kinase	IPR001048 (Aspartate/glutamate/uridylate kinase), IPR015963 (Uridylate kinase, bacteria)	GO:0005737 (cytoplasm), GO:0006221 (pyrimidine nucleotide biosynthetic process), GO:0033862 (UMP kinase activity)
Niben101Scf03888g01001.1	sp|O64705|PP184_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00714g06004.1	gb|AAO66526.1|	***-	expressed protein [Oryza sativa Japonica Group] gb|ABF99955.1| expressed protein [Oryza sativa Japonica Group] gb|EAY92632.1| hypothetical protein OsJ_13412 [Oryza sativa Japonica Group]	IPR009724 (Protein of unknown function DUF1301, TMEM70)	
Niben101Scf00339g13001.1			Unknown protein		
Niben101Scf00725g01014.1	gb|AIF76113.1|	*-*-	cytochrome c biogenesis B, partial (mitochondrion) [Halodule pinifolia]		
Niben101Scf03526g01004.1	AT1G04530.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=310	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf10306g00005.1	sp|O82013|HSP21_SOLPE	***-	17.3 kDa class II heat shock protein	IPR007055 (BON domain), IPR008978 (HSP20-like chaperone)	
Niben101Scf01297g01001.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02537g10001.1	sp|Q14498|RBM39_HUMAN	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf15739g02006.1	sp|Q9M2Y0|PSK3_ARATH	***-	Phytosulfokines 3	IPR009438 (Phytosulfokine)	GO:0005576 (extracellular region), GO:0008083 (growth factor activity), GO:0008283 (cell proliferation)
Niben101Scf00103g00002.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf11689g01029.1	sp|F4J2K2|FPGS2_ARATH	*-*-	Folylpolyglutamate synthase		
Niben101Scf05956g01013.1	gb|AAF14244.1|AF110228_1	*-*-	nuclear RNA binding protein A [Spinacia oleracea]	IPR006861 (Hyaluronan/mRNA-binding protein)	
Niben101Scf01515g07002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03592g02002.1	sp|Q2FJM6|IMDH_STAA3	****	Inosine-5'-monophosphate dehydrogenase	IPR005990 (Inosine-5'-monophosphate dehydrogenase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0003938 (IMP dehydrogenase activity), GO:0006164 (purine nucleotide biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01307g02020.1	gb|AAO66526.1|	*-*-	expressed protein [Oryza sativa Japonica Group] gb|ABF99955.1| expressed protein [Oryza sativa Japonica Group] gb|EAY92632.1| hypothetical protein OsJ_13412 [Oryza sativa Japonica Group]		
Niben101Scf11162g00002.1	AT1G68910.1	***-	WPP domain-interacting protein 2 LENGTH=627		
Niben101Scf04103g00009.1	sp|Q9FIE3|VIN3_ARATH	*-*-	Protein VERNALIZATION INSENSITIVE 3	IPR013783 (Immunoglobulin-like fold)	GO:0005515 (protein binding)
Niben101Scf08072g02001.1	ref|WP_018431889.1|	****	D-lactate dehydrogenase [Burkholderia sp. JPY251]	IPR016164 (FAD-linked oxidase-like, C-terminal), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05787g01001.1	AT5G03720.1	*-**	heat shock transcription factor A3 LENGTH=412	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06387g01001.1	AT2G01570.1	*-**	GRAS family transcription factor family protein LENGTH=587	IPR005202 (Transcription factor GRAS), IPR030006 (Transcriptional factor DELLA)	GO:0000989 (transcription factor binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf02774g03008.1	AT2G22620.1	***-	Rhamnogalacturonate lyase family protein LENGTH=677	IPR008979 (Galactose-binding domain-like), IPR010325 (Rhamnogalacturonate lyase), IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0030246 (carbohydrate binding)
Niben101Scf03737g03008.1	AT5G52580.2	*-*-	RabGAP/TBC domain-containing protein LENGTH=690	IPR000195 (Rab-GTPase-TBC domain), IPR021935 (Domain of unknown function DUF3548)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf04225g02002.1	AT3G14370.1	****	Protein kinase superfamily protein LENGTH=480	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04995g18022.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf08549g00006.1	AT5G05840.1	***-	Protein of unknown function (DUF620) LENGTH=439	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf13167g00009.1	AT5G61620.1	***-	myb-like transcription factor family protein LENGTH=317	IPR001878 (Zinc finger, CCHC-type), IPR009057 (Homeodomain-like)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0008270 (zinc ion binding)
Niben101Scf28115g00004.1	sp|O80939|LRK41_ARATH	--*-	L-type lectin-domain containing receptor kinase IV.1		
Niben101Scf03214g01011.1	emb|CDY08976.1|	--*-	BnaC01g31150D [Brassica napus]		
Niben101Scf16254g00015.1	sp|Q8CBC6|LRRN3_MOUSE	--*-	Leucine-rich repeat neuronal protein 3	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf06172g00022.1	AT3G28720.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=687		
Niben101Ctg13284g00003.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf08258g00001.1			Unknown protein		
Niben101Scf04656g00006.1	sp|Q42677|TKT7_CRAPL	***-	Transketolase 7	IPR005474 (Transketolase, N-terminal), IPR005475 (Transketolase-like, pyrimidine-binding domain), IPR005476 (Transketolase, C-terminal), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf05912g02006.1	sp|B0SDK7|ACP_LEPBA	***-	Acyl carrier protein	IPR003231 (Acyl carrier protein (ACP)), IPR009081 (Acyl carrier protein-like)	GO:0006633 (fatty acid biosynthetic process)
Niben101Scf00776g02002.1	tpg|DAA57049.1|	***-	TPA: hypothetical protein ZEAMMB73_793304 [Zea mays]		
Niben101Scf16613g04013.1			Unknown protein		
Niben101Scf02236g00001.1	sp|P48980|BGAL_SOLLC	***-	Beta-galactosidase	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf01310g04008.1	sp|O65874|MTF1_PEA	*-*-	MADS-box transcription factor 1	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf09708g10012.1	sp|P29162|ASOL_TOBAC	***-	L-ascorbate oxidase homolog	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05310g04015.1	sp|P39540|ELO1_YEAST	***-	Elongation of fatty acids protein 1	IPR002076 (ELO family)	GO:0016021 (integral component of membrane)
Niben101Scf03309g01003.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02104g00008.1	sp|Q0ZIV6|YCF2_VITVI	--*-	Protein Ycf2		
Niben101Scf01627g02012.1	sp|Q6NQK2|NAC8_ARATH	***-	NAC domain-containing protein 8	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04319g04013.1			Unknown protein		
Niben101Scf01596g06002.1	sp|Q8BLR2|CPNE4_MOUSE	*-*-	Copine-4	IPR002035 (von Willebrand factor, type A), IPR010734 (Copine)	
Niben101Scf04007g04009.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05135g02002.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf30418g00007.1	AT4G13580.1	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=244	IPR004265 (Plant disease resistance response protein)	
Niben101Ctg12118g00001.1	sp|Q7Y1B6|GAI_SOLLC	***-	DELLA protein GAI	IPR005202 (Transcription factor GRAS), IPR021914 (Transcriptional factor DELLA, N-terminal), IPR030006 (Transcriptional factor DELLA)	GO:0000989 (transcription factor binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf04410g03007.1	sp|Q9ZPQ3|GEK1_ARATH	*-**	D-aminoacyl-tRNA deacylase	IPR007508 (D-aminoacyl-tRNA deacylase)	GO:0016788 (hydrolase activity, acting on ester bonds), GO:0051499 (D-aminoacyl-tRNA deacylase activity)
Niben101Scf15568g00023.1	gb|KEH18876.1|	*-*-	AT hook motif DNA-binding family protein [Medicago truncatula]		
Niben101Scf01476g00010.1	emb|CDX72755.1|	***-	BnaC06g32030D [Brassica napus]		
Niben101Scf02673g00001.1	sp|Q16G71|MED10_AEDAE	--**	Mediator of RNA polymerase II transcription subunit 10	IPR019145 (Mediator complex, subunit Med10)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf03809g01013.1	sp|P27061|PPA1_SOLLC	****	Acid phosphatase 1	IPR005519 (Acid phosphatase (Class B)), IPR023214 (HAD-like domain)	GO:0003993 (acid phosphatase activity)
Niben101Scf06976g03013.1	sp|Q6TRW4|PDS5B_RAT	*-*-	Sister chromatid cohesion protein PDS5 homolog B	IPR007942 (Phospholipase-like)	
Niben101Scf01143g09001.1	sp|Q6AJW3|MSBA_DESPS	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf03436g01001.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02945g01039.1	sp|Q38W94|DNAJ_LACSS	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf04283g10001.1	ref|WP_026735807.1|	***-	3-beta hydroxysteroid dehydrogenase [Fischerella sp. PCC 9605]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf02292g00004.1	gb|KEH32622.1|	--**	DNA-3-methyladenine glycosylase I [Medicago truncatula]	IPR011257 (DNA glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair)
Niben101Scf04980g00028.1	dbj|BAM36190.1|	*-*-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf05063g04009.1	AT1G19110.1	***-	inter-alpha-trypsin inhibitor heavy chain-related LENGTH=754	IPR002035 (von Willebrand factor, type A)	
Niben101Scf04187g01002.1	AT5G03490.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=465	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06984g02001.1	AT2G40230.1	****	HXXXD-type acyl-transferase family protein LENGTH=433	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Ctg09289g00001.1	sp|P54772|DCHS_SOLLC	*-*-	Histidine decarboxylase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01304g02008.1	AT3G13870.1	****	Root hair defective 3 GTP-binding protein (RHD3) LENGTH=802	IPR008803 (RHD3/Sey1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf01146g07001.1	AT4G29230.1	*-*-	NAC domain containing protein 75 LENGTH=498	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf14494g00002.1			Unknown protein		
Niben101Scf00764g02011.1	sp|Q57604|MJK1_METJA	--**	Potassium channel protein 1	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03978g08008.1	sp|O22881|POT2_ARATH	****	Potassium transporter 2	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf04060g01004.1	AT1G66480.1	***-	plastid movement impaired 2 LENGTH=225	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf00317g08003.1	AT4G16563.1	***-	Eukaryotic aspartyl protease family protein LENGTH=499	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03116g02005.1	sp|Q14498|RBM39_HUMAN	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00713g05004.1			Unknown protein		
Niben101Scf00355g01020.1	ref|XP_002509542.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF50929.1| conserved hypothetical protein [Ricinus communis]	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf01920g00006.1	sp|O82089|CCH_ARATH	*-**	Copper transport protein CCH	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf01119g00007.1	sp|Q9ZRA2|HGD_ARATH	****	Homogentisate 1,2-dioxygenase	IPR005708 (Homogentisate 1,2-dioxygenase), IPR014710 (RmlC-like jelly roll fold)	GO:0004411 (homogentisate 1,2-dioxygenase activity), GO:0006559 (L-phenylalanine catabolic process), GO:0006570 (tyrosine metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf11391g00001.1			Unknown protein		
Niben101Scf14843g00001.1	AT4G31590.1	***-	Cellulose-synthase-like C5 LENGTH=692	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf02828g04012.1	ref|XP_002532638.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29741.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09127g00012.1	ref|WP_008309544.1|	***-	protein of unknown function (DUF1995) [Leptolyngbya sp. PCC 6406]	IPR018962 (Domain of unknown function DUF1995)	
Niben101Scf01922g07002.1	sp|Q9ZW30|GSTU1_ARATH	***-	Glutathione S-transferase U1	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	
Niben101Scf05823g02010.1	sp|Q9FNC7|SUVR2_ARATH	****	Histone-lysine N-methyltransferase SUVR2	IPR018848 (WIYLD domain)	GO:0018024 (histone-lysine N-methyltransferase activity)
Niben101Scf00854g10047.1			Unknown protein		
Niben101Scf02637g05010.1	AT2G35250.1	***-	Protein of Unknown Function (DUF239) LENGTH=342	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf15192g01006.1	ref|WP_029252307.1|	--*-	DNA helicase [Paraoerskovia marina]		
Niben101Scf03437g02008.1	sp|Q9LPR6|TET11_ARATH	*-*-	Tetraspanin-11	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf04008g00011.1	gb|AAB87670.1|	*-*-	adenyl cyclase [Nicotiana tabacum]		
Niben101Scf03350g06010.1	sp|A7GRA2|MIAB_BACCN	--*-	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	IPR002792 (TRAM domain), IPR023970 (Methylthiotransferase/radical SAM-type protein)	
Niben101Scf05618g05006.1	sp|O65874|MTF1_PEA	*-**	MADS-box transcription factor 1	IPR000406 (RHO protein GDP dissociation inhibitor), IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005094 (Rho GDP-dissociation inhibitor activity), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04731g11020.1			Unknown protein		
Niben101Scf01102g01007.1	sp|Q9LN01|PPR21_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf11980g03011.1	emb|CDY37371.1|	***-	BnaC02g33890D [Brassica napus]		
Niben101Scf00116g06003.1	AT4G20860.1	****	FAD-binding Berberine family protein LENGTH=530	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06293g03005.1	AT2G39970.1	***-	Mitochondrial substrate carrier family protein LENGTH=331	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf13854g00011.1	emb|CCQ73689.1|	*-*-	Conserved hypothetical protein; putative Acyl-CoA N-acyltransferase domain [Magnetospira sp. QH-2]	IPR007434 (Protein of unknown function DUF482)	
Niben101Scf02839g02003.1	sp|P55200|KMT2A_MOUSE	*-*-	Histone-lysine N-methyltransferase 2A	IPR000313 (PWWP domain), IPR001214 (SET domain), IPR003616 (Post-SET domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR025780 (Histone-lysine N-methyltransferase ATX)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02289g10020.1	sp|P34114|PHS2_DICDI	*-**	Glycogen phosphorylase 2	IPR000811 (Glycosyl transferase, family 35)	GO:0005975 (carbohydrate metabolic process), GO:0008184 (glycogen phosphorylase activity)
Niben101Scf00823g01008.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf00646g04020.1	sp|P43255|CSN8_ARATH	***-	COP9 signalosome complex subunit 8		
Niben101Scf06189g03010.1	sp|O80434|LAC4_ARATH	*-*-	Laccase-4	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00752g02001.1			Unknown protein		
Niben101Scf03894g02010.1			Unknown protein	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf04323g03007.1	sp|Q86MW9|SINA_SCHMA	****	E3 ubiquitin-protein ligase sina	IPR004162 (E3 ubiquitin-protein ligase SINA like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf06772g01011.1	AT1G73690.1	*-**	cyclin-dependent kinase D1;1 LENGTH=398	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04944g03001.1	ref|XP_003603443.1|	***-	EG45-like domain containing protein [Medicago truncatula]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf01154g08005.1	sp|Q9SIB4|WOX3_ARATH	***-	WUSCHEL-related homeobox 3	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf06823g02001.1	sp|Q566M8|RN150_DANRE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04084g02004.1			Unknown protein		
Niben101Scf03710g11001.1	AT1G44130.1	***-	Eukaryotic aspartyl protease family protein LENGTH=405	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05555g00008.1	sp|Q40459|PSBO_TOBAC	****	Oxygen-evolving enhancer protein 1, chloroplastic	IPR002628 (Photosystem II PsbO, manganese-stabilising), IPR011250 (Outer membrane protein/outer membrane enzyme PagP , beta-barrel)	GO:0005509 (calcium ion binding), GO:0009279 (cell outer membrane), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019898 (extrinsic component of membrane), GO:0042549 (photosystem II stabilization)
Niben101Scf03222g02002.1	emb|CDX97089.1|	***-	BnaC09g45360D [Brassica napus]		
Niben101Scf02023g00007.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf10448g00020.1	sp|Q9AST6|VSP55_ARATH	***-	Vacuolar protein sorting-associated protein 55 homolog	IPR007262 (Vacuolar protein sorting 55)	
Niben101Scf06356g00006.1	sp|O59737|GYP1_SCHPO	****	GTPase-activating protein gyp1	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf01866g01006.1	sp|Q9SSF9|PP123_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf02111g18010.1	AT3G06560.1	****	poly(A) polymerase 3 LENGTH=507	IPR007012 (Poly(A) polymerase, central domain), IPR011068 (Nucleotidyltransferase, class I, C-terminal-like)	GO:0003723 (RNA binding), GO:0004652 (polynucleotide adenylyltransferase activity), GO:0005634 (nucleus), GO:0016779 (nucleotidyltransferase activity), GO:0031123 (RNA 3'-end processing), GO:0043631 (RNA polyadenylation)
Niben101Scf11072g00003.1	AT2G35880.1	***-	TPX2 (targeting protein for Xklp2) protein family LENGTH=432	IPR027329 (TPX2, C-terminal domain)	
Niben101Scf17538g00009.1	sp|Q9FJR0|RENT1_ARATH	*-*-	Regulator of nonsense transcripts 1 homolog		
Niben101Scf00268g04006.1	AT2G04410.1	***-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=73	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf06349g02005.1	AT5G14690.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=217		
Niben101Scf02786g00013.1	sp|Q8GXJ1|HDA15_ARATH	***-	Histone deacetylase 15	IPR000286 (Histone deacetylase superfamily), IPR001876 (Zinc finger, RanBP2-type), IPR023801 (Histone deacetylase domain)	GO:0008270 (zinc ion binding)
Niben101Scf04292g00009.1	sp|Q8L5Z7|SNX2A_ARATH	--*-	Sorting nexin 2A		
Niben101Scf00142g01014.1	AT4G17800.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=292	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf01718g08027.1	ref|XP_003603840.1|	***-	Hippocampus abundant transcript-like protein [Medicago truncatula]	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf06848g00008.1	AT4G19710.2	****	aspartate kinase-homoserine dehydrogenase ii LENGTH=916	IPR011147 (Bifunctional aspartokinase/homoserine dehydrogenase I), IPR016040 (NAD(P)-binding domain)	GO:0004072 (aspartate kinase activity), GO:0004412 (homoserine dehydrogenase activity), GO:0006520 (cellular amino acid metabolic process), GO:0008152 (metabolic process), GO:0008652 (cellular amino acid biosynthetic process), GO:0009067 (aspartate family amino acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0016597 (amino acid binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03213g03024.1	sp|Q5A4W8|BDF1_CANAL	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf02968g06008.1	sp|O23044|PER3_ARATH	****	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07614g03004.1	sp|Q39255|SKP1A_ARATH	***-	SKP1-like protein 1A	IPR001232 (S-phase kinase-associated protein 1-like), IPR011333 (BTB/POZ fold), IPR016072 (SKP1 component, dimerisation)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf03226g04021.1	sp|O82337|AGP16_ARATH	***-	Arabinogalactan peptide 16	IPR009424 (Arabinogalactan peptide, AGP)	
Niben101Scf04315g00001.1	gb|KEH31712.1|	*-*-	calmodulin-binding protein [Medicago truncatula]	IPR025064 (Domain of unknown function DUF4005)	
Niben101Scf04504g01012.1	gb|ABF97305.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf08653g05001.1	sp|P24008|S5A1_RAT	--*-	3-oxo-5-alpha-steroid 4-dehydrogenase 1	IPR010721 (Protein of unknown function DUF1295)	GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
Niben101Scf04371g04004.1	sp|P93231|VPS41_SOLLC	***-	Vacuolar protein sorting-associated protein 41 homolog	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR016902 (Vacuolar protein sorting-associated protein 41)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport)
Niben101Scf02908g05001.1	AT1G01300.1	***-	Eukaryotic aspartyl protease family protein LENGTH=485	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00197g03004.1	sp|Q9SD40|SRS1_ARATH	***-	Protein SHI RELATED SEQUENCE 1	IPR007818 (Protein of unknown function DUF702)	
Niben101Scf12199g00004.1	AT1G61080.1	*-*-	Hydroxyproline-rich glycoprotein family protein LENGTH=907		
Niben101Scf01450g04003.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf03425g00005.1	AT1G09960.1	****	sucrose transporter 4 LENGTH=510	IPR005989 (Sucrose/H+ symporter, plant), IPR020846 (Major facilitator superfamily domain)	GO:0005887 (integral component of plasma membrane), GO:0008515 (sucrose transmembrane transporter activity), GO:0015770 (sucrose transport)
Niben101Scf13162g00003.1	emb|CDY67224.1|	***-	BnaCnng54000D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf04785g01002.1	sp|Q1PF33|TI441_ARATH	***-	Mitochondrial import inner membrane translocase subunit TIM44-1	IPR007379 (Tim44-like domain)	
Niben101Scf01771g01008.1	sp|Q84VW5|MED32_ARATH	***-	Mediator of RNA polymerase II transcription subunit 32		
Niben101Scf05688g12001.1	sp|Q5PGB6|RLMI_SALPA	****	Ribosomal RNA large subunit methyltransferase I	IPR015947 (PUA-like domain), IPR019614 (S-adenosylmethionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf03057g00014.1	gb|AES91711.2|	*-*-	octicosapeptide/phox/Bem1p domain kinase superfamily protein [Medicago truncatula]		
Niben101Scf07849g01018.1	emb|CDY00790.1|	*-*-	BnaC03g37740D [Brassica napus]		
Niben101Scf02460g03002.1	sp|Q9XG77|PSA6_TOBAC	*-**	Proteasome subunit alpha type-6	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf11303g01018.1	ref|XP_002512002.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF50671.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf13018g00012.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf03932g04008.1	AT5G46190.1	****	RNA-binding KH domain-containing protein LENGTH=644	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf00152g00001.1	sp|Q9LQZ7|BBX21_ARATH	*-*-	B-box zinc finger protein 21		
Niben101Scf06996g02003.1	sp|A2SS78|PSB_METLZ	-***	Proteasome subunit beta	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf03789g01008.1	AT5G65550.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=466	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf12852g00002.1	AT3G05910.1	***-	Pectinacetylesterase family protein LENGTH=415	IPR004963 (Protein notum homologue)	
Niben101Scf01375g07002.1	AT5G62650.1	*-*-	Tic22-like family protein LENGTH=529		
Niben101Scf00317g05001.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf04995g00012.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05057g04002.1			Unknown protein		
Niben101Scf02256g00006.1	sp|P19963|ALL1_OLEEU	***-	Major pollen allergen Ole e 1	IPR006041 (Pollen Ole e 1 allergen/extensin)	GO:0005615 (extracellular space)
Niben101Scf01538g05009.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04083g01027.1	sp|Q753M3|PCC1_ASHGO	-**-	EKC/KEOPS complex subunit PCC1	IPR015419 (CTAG/Pcc1 family)	
Niben101Scf04387g01037.1	gb|ACG37046.1|	*-*-	glycine-rich protein [Zea mays]		
Niben101Scf03969g06002.1	AT5G45170.1	***-	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=372	IPR023214 (HAD-like domain)	
Niben101Scf08321g02005.1	dbj|BAD66730.1|	-**-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf15224g00001.1			Unknown protein		
Niben101Scf08665g02019.1	sp|Q922V4|PLRG1_MOUSE	--*-	Pleiotropic regulator 1		
Niben101Scf03989g02002.1	emb|CDY10879.1|	--*-	BnaC01g14940D [Brassica napus]	IPR004314 (Domain of unknown function DUF239)	
Niben101Scf03154g02005.1	sp|Q9LFS8|SMC5_ARATH	*-*-	Structural maintenance of chromosomes protein 5	IPR027131 (Structural maintenance of chromosomes protein 5), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000724 (double-strand break repair via homologous recombination), GO:0006281 (DNA repair), GO:0030915 (Smc5-Smc6 complex)
Niben101Scf07364g00018.1	ref|XP_003600958.1|	****	Sorting and assembly machinery component-like protein [Medicago truncatula] gb|AES71209.1| outer membrane OMP85 family protein [Medicago truncatula]	IPR000184 (Bacterial surface antigen (D15))	GO:0019867 (outer membrane)
Niben101Scf03152g00016.1	sp|Q06RF0|MATK_JASNU	***-	Maturase K	IPR024937 (Domain X), IPR024942 (Maturase MatK, N-terminal domain)	GO:0006397 (mRNA processing)
Niben101Scf14098g00007.1	AT2G10940.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=291	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf01983g15010.1	sp|Q9ZV88|BEH4_ARATH	***-	BES1/BZR1 homolog protein 4	IPR008540 (BZR1, transcriptional repressor)	
Niben101Scf01582g09001.1	sp|Q02084|A33_PLEWA	--**	Zinc-binding protein A33	IPR003105 (SRA-YDG), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015947 (PUA-like domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0042393 (histone binding), GO:0046872 (metal ion binding)
Niben101Scf32536g00017.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05201g00003.1	gb|KEH33270.1|	***-	reactive oxygen species modulator 1 [Medicago truncatula]	IPR018450 (Reactive oxygen species modulator 1)	
Niben101Scf00883g09008.1	AT2G21300.1	*-**	ATP binding microtubule motor family protein LENGTH=862	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf06224g00003.1			Unknown protein		
Niben101Scf05484g02007.1	AT1G16220.1	***-	Protein phosphatase 2C family protein LENGTH=491	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf09658g00030.1	sp|Q9M836|LSH2_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2	IPR006936 (ALOG domain)	
Niben101Scf09133g01006.1			Unknown protein		
Niben101Scf03766g00003.1	AT5G22210.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=80		
Niben101Scf03497g09006.1	sp|Q9ZQI3|GDL40_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04608g05036.1	AT5G03540.3	*-**	exocyst subunit exo70 family protein A1 LENGTH=664	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf07402g05014.1	sp|P81394|MYB15_ANTMA	*-*-	Myb-related protein 315	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03770g00004.1	sp|Q93Z08|E136_ARATH	***-	Glucan endo-1,3-beta-glucosidase 6	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06158g00001.1	ref|XP_003623370.1|	--*-	Proteasome subunit alpha type [Medicago truncatula]		
Niben101Scf07678g07015.1	sp|Q9FJ45|GDL83_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf10986g00012.1	sp|Q9SV72|EPFL9_ARATH	*-*-	EPIDERMAL PATTERNING FACTOR-like protein 9		
Niben101Scf03839g01007.1	sp|P44933|KEFX_HAEIN	--*-	Glutathione-regulated potassium-efflux system protein	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02252g01029.1	sp|Q969V3|NCLN_HUMAN	***-	Nicalin	IPR007484 (Peptidase M28), IPR018247 (EF-Hand 1, calcium-binding site)	
Niben101Scf05118g00012.1	sp|Q9CAM8|PP100_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf14312g00016.1	ref|WP_017941821.1|	***-	MULTISPECIES: hypothetical protein [Thioalkalivibrio]	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf00383g01008.1	ref|XP_002516624.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF45748.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf20099g01010.1	sp|Q6K8R2|CHI6_ORYSJ	****	Chitinase 6	IPR000726 (Glycoside hydrolase, family 19, catalytic), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0006032 (chitin catabolic process), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf02746g05005.1	gb|ACV41040.1|	***-	self-incompatibility protein [Argemone munita]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf01450g01001.1	sp|Q6PFM0|JMJD6_DANRE	*-*-	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6	IPR001810 (F-box domain), IPR003347 (JmjC domain), IPR011009 (Protein kinase-like domain)	GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00189g06003.1	sp|O82013|HSP21_SOLPE	***-	17.3 kDa class II heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf11991g01004.1	ref|NP_064035.1|	-**-	orf110a gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] dbj|BAA99346.1| orf110a [Beta vulgaris subsp. vulgaris]		
Niben101Scf14360g00001.1	ref|XP_002313513.1|	*-*-	hydroxyproline-rich glycoprotein [Populus trichocarpa] gb|EEE87468.1| hydroxyproline-rich glycoprotein [Populus trichocarpa]		
Niben101Scf07951g00008.1	sp|Q0D3N0|PER2_ORYSJ	****	Peroxidase 2	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00854g08054.1	sp|Q7WCU6|NUOH_BORBR	--*-	NADH-quinone oxidoreductase subunit H		
Niben101Scf01155g05010.1	AT5G40270.1	***-	HD domain-containing metal-dependent phosphohydrolase family protein LENGTH=473	IPR003607 (HD/PDEase domain)	
Niben101Scf01750g04002.1	gb|KEH41335.1|	*-*-	linker histone H1 and h5 family protein [Medicago truncatula]	IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf38401g00005.1	AT3G13780.1	*-*-	SMAD/FHA domain-containing protein LENGTH=309	IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf00996g01010.1	AT3G58750.1	***-	citrate synthase 2 LENGTH=514	IPR002020 (Citrate synthase-like)	GO:0006099 (tricarboxylic acid cycle), GO:0044262 (cellular carbohydrate metabolic process), GO:0046912 (transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer)
Niben101Scf02414g03012.1			Unknown protein		
Niben101Scf07066g03005.1	sp|O80341|EF102_ARATH	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01163g04023.1	gb|ABF98470.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf15022g00007.1	sp|Q8W4S4|VHAA3_ARATH	****	V-type proton ATPase subunit a3	IPR002490 (V-type  ATPase, V0 complex, 116kDa subunit family)	GO:0000220 (vacuolar proton-transporting V-type ATPase, V0 domain), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf08446g02001.1	sp|D7KBH3|CASP6_ARALL	*-*-	Casparian strip membrane protein 6	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf02210g07009.1	gb|AES60043.2|	****	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf04134g03009.1	AT2G27385.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=173	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf11936g00002.1	sp|Q9M0X5|CRK25_ARATH	*-**	Cysteine-rich receptor-like protein kinase 25	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01518g00011.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf08724g04013.1	sp|Q8GXS8|PKS3_ARATH	***-	Protein PHYTOCHROME KINASE SUBSTRATE 3		
Niben101Scf01956g02002.1	sp|Q9LRZ5|PLDP1_ARATH	***-	Phospholipase D p1	IPR011993 (Pleckstrin homology-like domain), IPR015679 (Phospholipase D family), IPR025202 (Phospholipase D-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01661g00011.1			Unknown protein		
Niben101Ctg07700g00001.1	tpg|DAA63200.1|	*-*-	TPA: hypothetical protein ZEAMMB73_196696 [Zea mays]	IPR003435 (Chaperonin-like RbcX)	
Niben101Scf04000g01014.1	AT2G47350.1	***-	HIT zinc finger ;PAPA-1-like conserved region LENGTH=486	IPR006880 (INO80 complex subunit B-like conserved region), IPR007529 (Zinc finger, HIT-type), IPR029523 (INO80 complex, subunit Ies2)	GO:0006338 (chromatin remodeling), GO:0006355 (regulation of transcription, DNA-templated), GO:0031011 (Ino80 complex)
Niben101Scf04763g02011.1	AT3G29200.1	****	chorismate mutase 1 LENGTH=340	IPR008238 (Chorismate mutase, AroQ class, eukaryotic type)	GO:0004106 (chorismate mutase activity), GO:0009073 (aromatic amino acid family biosynthetic process), GO:0046417 (chorismate metabolic process)
Niben101Scf38001g00001.1	sp|Q5R8F7|PABP1_PONAB	*-**	Polyadenylate-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07788g04022.1	sp|Q6NQK2|NAC8_ARATH	*-*-	NAC domain-containing protein 8	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05201g06019.1	sp|P93031|GMD2_ARATH	****	GDP-mannose 4,6 dehydratase 2	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR006368 (GDP-mannose 4,6-dehydratase)	GO:0003824 (catalytic activity), GO:0008446 (GDP-mannose 4,6-dehydratase activity), GO:0019673 (GDP-mannose metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf01022g03040.1	AT3G06630.1	***-	protein kinase family protein LENGTH=671	IPR000014 (PAS domain)	GO:0004871 (signal transducer activity), GO:0007165 (signal transduction)
Niben101Scf02044g02005.1	AT2G15220.1	***-	Plant basic secretory protein (BSP) family protein LENGTH=225	IPR007541 (Uncharacterised protein family, basic secretory protein)	
Niben101Scf02976g01011.1	AT3G55600.1	***-	Membrane fusion protein Use1 LENGTH=240	IPR019150 (Vesicle transport protein, Use1)	
Niben101Scf08544g00004.1	sp|Q9P8C0|G3P_PHANO	***-	Glyceraldehyde-3-phosphate dehydrogenase	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf03076g02007.1	gb|KEH15552.1|	*-*-	LRR receptor-like kinase family protein, partial [Medicago truncatula]		
Niben101Scf12135g00015.1	sp|P59584|RP8HA_ARATH	--*-	Disease resistance protein RPH8A		
Niben101Scf02939g02007.1	sp|O48660|SPDE_NICSY	--*-	Spermidine synthase	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00603g02006.1	gb|AAN77150.1|	--*-	fiber protein Fb11 [Gossypium barbadense]		
Niben101Scf39490g00008.1	sp|B9E1C8|DER_CLOK1	*-*-	GTPase Der	IPR006073 (GTP binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf05057g01014.1	sp|Q32PP1|CE045_DANRE	*-*-	UPF0544 protein C5orf45 homolog		
Niben101Scf02831g04005.1	gb|AET01599.2|	***-	epidermal patterning factor-like protein [Medicago truncatula]		
Niben101Scf00528g01002.1	sp|P50699|TLPH_ARATH	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf01114g00015.1	AT5G02460.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=399	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00998g00004.1	sp|A1L0Z4|TBCC1_XENTR	***-	TBCC domain-containing protein 1	IPR017901 (C-CAP/cofactor C-like domain)	GO:0000902 (cell morphogenesis), GO:0003779 (actin binding), GO:0007010 (cytoskeleton organization)
Niben101Scf08653g01010.1	sp|A4W9T2|MDTK_ENT38	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01026g02001.1	sp|Q05A36|MEX3C_MOUSE	--**	RNA-binding E3 ubiquitin-protein ligase MEX3C	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf11837g00003.1	sp|E9QAU8|RN165_MOUSE	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00730g01011.1	sp|Q9CQ79|TXND9_MOUSE	*-*-	Thioredoxin domain-containing protein 9	IPR012336 (Thioredoxin-like fold)	
Niben101Ctg04264g00001.1	sp|Q9SR40|LAC7_ARATH	*-*-	Laccase-7	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10712g00032.1			Unknown protein		
Niben101Scf00902g06003.1	AT2G39980.1	****	HXXXD-type acyl-transferase family protein LENGTH=482	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02340g06009.1	sp|Q9ZU11|ATB15_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-15		
Niben101Scf01062g08014.1	AT5G57940.1	****	cyclic nucleotide gated channel 5 LENGTH=717	IPR000048 (IQ motif, EF-hand binding site), IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0005515 (protein binding), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02298g05001.1	AT1G11390.1	***-	Protein kinase superfamily protein LENGTH=624	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06045g00014.1	sp|Q5HZ36|GAT21_ARATH	*-**	GATA transcription factor 21	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09544g01010.1	sp|B7J0N5|FTSH_BORBZ	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf24421g00002.1	sp|Q9RFD5|BCHH_RHOS4	*-**	Magnesium-chelatase subunit H	IPR003672 (CobN/magnesium chelatase), IPR022571 (Magnesium chelatase, subunit H, N-terminal)	GO:0009058 (biosynthetic process), GO:0016851 (magnesium chelatase activity)
Niben101Scf09775g00002.1			Unknown protein	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf00505g04016.1			Unknown protein		
Niben101Scf03720g00006.1	emb|CDY34440.1|	*-*-	BnaC01g21930D [Brassica napus]		
Niben101Scf03152g00017.1	sp|Q7YJY8|PSBA_CALFG	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf04684g03016.1	sp|P81395|MYB30_ANTMA	***-	Myb-related protein 330	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05415g00003.1	AT2G43840.2	***-	UDP-glycosyltransferase 74 F1 LENGTH=449	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf09628g00002.1			Unknown protein		
Niben101Scf00163g18003.1	ref|XP_002529572.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF32806.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01252g03004.1	AT4G08685.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=159	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf01184g16001.1	sp|Q9C9H5|GUN9_ARATH	***-	Endoglucanase 9	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00482g10009.1	gb|AAB97814.1|	*-*-	PttA' [Petunia x hybrida]		
Niben101Scf01580g05003.1			Unknown protein		
Niben101Scf01682g00004.1			Unknown protein		
Niben101Scf05483g08004.1	sp|Q9SSK5|MLP43_ARATH	***-	MLP-like protein 43	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf03256g02002.1	AT2G30395.1	***-	ovate family protein 17 LENGTH=195		
Niben101Scf00756g01012.1	sp|Q9LYZ9|PP362_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07474g04002.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07763g02016.1	gb|AFJ42378.1|	*-*-	erect panicle 2 protein, partial [Phacelurus digitatus]		
Niben101Scf02837g08015.1	AT1G01470.1	*-*-	Late embryogenesis abundant protein LENGTH=151	IPR004864 (Late embryogenesis abundant protein, LEA-14), IPR013783 (Immunoglobulin-like fold)	GO:0009269 (response to desiccation)
Niben101Scf08921g02016.1	sp|A2WT95|PLA1_ORYSI	***-	Phospholipase A1-II 1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf04424g07001.1	sp|E7F6F9|KLHL3_DANRE	*-*-	Kelch-like protein 3	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf02078g05001.1	AT1G09320.1	*-*-	agenet domain-containing protein LENGTH=517	IPR007930 (Protein of unknown function DUF724), IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf09234g03025.1	gb|EEQ42357.1|	***-	translation initiation factor eIF-2B epsilon subunit [Candida albicans WO-1]	IPR011004 (Trimeric LpxA-like), IPR016024 (Armadillo-type fold), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf06727g00019.1	sp|Q93ZQ5|SPXM3_ARATH	*-*-	SPX domain-containing membrane protein		
Niben101Scf12866g00025.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf28259g00012.1	sp|Q8LG03|FB345_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01319g02013.1	AT5G22510.1	***-	alkaline/neutral invertase LENGTH=617	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf08535g00001.1	sp|Q9M2F1|RS272_ARATH	***-	40S ribosomal protein S27-2	IPR000592 (Ribosomal protein S27e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf13231g02015.1	sp|P93755|C3H30_ARATH	***-	Zinc finger CCCH domain-containing protein 30	IPR000571 (Zinc finger, CCCH-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf00961g03012.1			Unknown protein		
Niben101Ctg13946g00001.1	sp|P94072|GL33_ARATH	***-	Germin-like protein subfamily 3 member 3	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf07023g03003.1	AT1G63210.1	****	Transcription elongation factor Spt6 LENGTH=1197	IPR010994 (RuvA domain 2-like), IPR012337 (Ribonuclease H-like domain), IPR012340 (Nucleic acid-binding, OB-fold), IPR017072 (Transcription elongation factor Spt6), IPR023097 (Tex RuvX-like domain), IPR023323 (Tex-like domain), IPR028083 (Spt6 acidic, N-terminal domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0032784 (regulation of DNA-templated transcription, elongation)
Niben101Scf06441g01007.1	ref|NP_191672.1|	****	alpha-1,4-galacturon [Arabidopsis thaliana] emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gb|AHL38722.1| glycosyltransferase, partial [Arabidopsis thaliana]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf01226g02006.1	AT2G41660.1	***-	Protein of unknown function, DUF617 LENGTH=297	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf07007g02005.1	gb|ACG36548.1|	***-	fiber protein Fb34 [Zea mays]	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf07474g01009.1	sp|Q9SDQ3|SCL1_ARATH	***-	Scarecrow-like protein 1	IPR005202 (Transcription factor GRAS), IPR030011 (Scarecrow-like protein 1)	
Niben101Scf00138g05021.1	sp|Q9SAK5|APL_ARATH	***-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01267g11013.1	gb|AFW56318.1|	***-	ABA-responsive protein [Zea mays]	IPR004182 (GRAM domain)	
Niben101Scf06999g01023.1	sp|Q50940|CAH_NEIGO	***-	Carbonic anhydrase	IPR001148 (Alpha carbonic anhydrase), IPR023561 (Carbonic anhydrase, alpha-class)	GO:0004089 (carbonate dehydratase activity), GO:0006730 (one-carbon metabolic process), GO:0008270 (zinc ion binding)
Niben101Scf03747g04036.1	ref|WP_032853289.1|	****	glycosyl hydrolase family 43 [Bacteroides sp. D2]	IPR006710 (Glycoside hydrolase, family 43), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02605g00002.1	sp|Q94758|DYL1_SCHMA	***-	Dynein light chain	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Scf08033g01007.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07854g02001.1			Unknown protein		
Niben101Scf07516g03006.1	sp|P11415|QOR_CAVPO	****	Quinone oxidoreductase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00142g01015.1	gb|AAW28576.2|	--*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Ctg14855g00002.1	gb|KEH33530.1|	--**	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf04432g08002.1	AT5G06990.1	***-	Protein of unknown function, DUF617 LENGTH=261	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf05917g01020.1	gb|ABN09101.1|	***-	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	
Niben101Scf01319g00001.1	sp|Q8BMK1|METL2_MOUSE	--**	Methyltransferase-like protein 2	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf39208g00009.1	sp|Q9T0J6|DUS3L_ARATH	****	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	IPR000571 (Zinc finger, CCCH-type), IPR001269 (tRNA-dihydrouridine synthase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008033 (tRNA processing), GO:0017150 (tRNA dihydrouridine synthase activity), GO:0046872 (metal ion binding), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07590g02006.1	AT2G44870.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=248		
Niben101Scf01985g04012.1	sp|Q6AWW5|Y5262_ARATH	*-*-	Ankyrin repeat-containing protein	IPR000535 (MSP domain), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf05175g03003.1	sp|Q84V83|LAR_DESUN	***-	Leucoanthocyanidin reductase	IPR016040 (NAD(P)-binding domain)	
Niben101Scf00268g04007.1			Unknown protein		
Niben101Scf01661g02020.1	sp|A5VKU8|URK_LACRD	*-**	Uridine kinase	IPR000764 (Uridine kinase like), IPR023577 (CYTH-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016301 (kinase activity)
Niben101Scf04739g00022.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00307g03011.1	AT3G18290.1	****	zinc finger protein-related LENGTH=1254	IPR004039 (Rubredoxin-type fold), IPR008913 (Zinc finger, CHY-type), IPR012312 (Haemerythrin/HHE cation-binding motif), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017921 (Zinc finger, CTCHY-type)	GO:0008270 (zinc ion binding)
Niben101Scf06869g02008.1	sp|B2JEJ7|F16A1_BURP8	*-**	Fructose-1,6-bisphosphatase class 1 1	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf03934g00017.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04993g03002.1			Unknown protein		
Niben101Scf09523g01011.1	gb|KEH42940.1|	--*-	eukaryotic aspartyl protease family protein [Medicago truncatula]	IPR021109 (Aspartic peptidase domain)	
Niben101Scf01157g01005.1	AT1G42430.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=426		
Niben101Scf00032g01006.1	sp|Q84WU2|UBP13_ARATH	*-*-	Ubiquitin carboxyl-terminal hydrolase 13	IPR008974 (TRAF-like)	GO:0005515 (protein binding)
Niben101Scf01304g13002.1	sp|F4IXJ7|MED6_ARATH	****	Mediator of RNA polymerase II transcription subunit 6	IPR007018 (Mediator complex, subunit Med6)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf00830g03001.1	AT4G37790.1	*-*-	Homeobox-leucine zipper protein family LENGTH=278	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf32392g01006.1	AT3G03000.1	****	EF hand calcium-binding protein family LENGTH=165	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00017g04017.1	sp|Q48LD5|DAPA_PSE14	****	4-hydroxy-tetrahydrodipicolinate synthase	IPR002220 (DapA-like), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0008840 (4-hydroxy-tetrahydrodipicolinate synthase), GO:0009089 (lysine biosynthetic process via diaminopimelate), GO:0016829 (lyase activity)
Niben101Scf04146g01023.1	sp|A6TM69|AROE_ALKMQ	****	Shikimate dehydrogenase	IPR013785 (Aldolase-type TIM barrel), IPR016040 (NAD(P)-binding domain), IPR022893 (Shikimate, quinate/shikimate dehydrogenase)	GO:0003824 (catalytic activity), GO:0003855 (3-dehydroquinate dehydratase activity), GO:0004764 (shikimate 3-dehydrogenase (NADP+) activity), GO:0019632 (shikimate metabolic process), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02502g06015.1	sp|O04375|2A5A_ARATH	****	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf01237g09002.1	sp|Q9FFB8|CHX3_ARATH	****	Cation/H(+) antiporter 3	IPR006153 (Cation/H+ exchanger), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0006950 (response to stress), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00369g08006.1	sp|Q2JWJ1|CLPP1_SYNJA	***-	ATP-dependent Clp protease proteolytic subunit 1	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03643g03007.1			Unknown protein		
Niben101Scf02031g06005.1	sp|Q9LTS7|C3H65_ARATH	*-*-	Zinc finger CCCH domain-containing protein 65	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf05385g04006.1	sp|Q304B9|NCASE_ARATH	***-	Neutral ceramidase	IPR006823 (Neutral/alkaline nonlysosomal ceramidase)	
Niben101Scf00854g00045.1	gb|AIF76113.1|	****	cytochrome c biogenesis B, partial (mitochondrion) [Halodule pinifolia]	IPR003544 (Cytochrome c-type biogenesis protein CcmB)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf09130g01006.1	sp|Q8GYX0|MOB1_ARATH	***-	MOB kinase activator-like 1	IPR005301 (Mob1/phocein)	
Niben101Scf00980g01001.1	gb|KEH22322.1|	*-*-	haloacid dehalogenase-like hydrolase domain protein [Medicago truncatula]		
Niben101Scf00437g00014.1	AT4G16380.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=254	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf00063g03007.1	sp|P69039|IF5A1_NICPL	****	Eukaryotic translation initiation factor 5A-1	IPR001884 (Translation elongation factor IF5A)	GO:0003723 (RNA binding), GO:0003746 (translation elongation factor activity), GO:0006452 (translational frameshifting), GO:0043022 (ribosome binding), GO:0045901 (positive regulation of translational elongation), GO:0045905 (positive regulation of translational termination)
Niben101Scf06091g06019.1	AT3G15900.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=141		
Niben101Scf02105g02017.1	sp|Q9SWE5|HAL3A_ARATH	***-	Phosphopantothenoylcysteine decarboxylase	IPR003382 (Flavoprotein)	GO:0003824 (catalytic activity)
Niben101Scf03266g05008.1	gb|KEH42510.1|	*-*-	Serine/Threonine-kinase, putative [Medicago truncatula]		
Niben101Scf08234g00002.1	sp|O60318|GANP_HUMAN	--*-	Germinal-center associated nuclear protein		
Niben101Scf00466g04033.1	sp|Q5R5B6|PDIA1_PONAB	*-**	Protein disulfide-isomerase	IPR011679 (Endoplasmic reticulum, protein ERp29, C-terminal), IPR012336 (Thioredoxin-like fold)	GO:0005783 (endoplasmic reticulum), GO:0016853 (isomerase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf14102g01005.1			Unknown protein		
Niben101Scf04339g06011.1	sp|Q5RJU0|SNF8_XENTR	***-	Vacuolar-sorting protein SNF8	IPR007286 (EAP30), IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf09112g03003.1	gb|KFN01986.1|	****	magnesium-translocating P-type ATPase [Bacillus mycoides]	IPR001757 (P-type ATPase), IPR006415 (P-type ATPase, subfamily IIIB), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0015444 (magnesium-importing ATPase activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf05562g00006.1	sp|Q5QM99|RL37A_ORYSJ	***-	60S ribosomal protein L37a	IPR002674 (Ribosomal protein L37ae), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06113g00019.1	AT1G75710.1	*-*-	C2H2-like zinc finger protein LENGTH=462	IPR007087 (Zinc finger, C2H2), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain)	GO:0003950 (NAD+ ADP-ribosyltransferase activity), GO:0046872 (metal ion binding)
Niben101Scf01143g02011.1	sp|Q9ZSD6|ASPG_LUPLU	***-	Isoaspartyl peptidase/L-asparaginase	IPR000246 (Peptidase T2, asparaginase 2), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0016787 (hydrolase activity)
Niben101Scf33728g00002.1	AT3G29010.1	*-*-	Biotin/lipoate A/B protein ligase family LENGTH=262		
Niben101Scf01749g02006.1	sp|Q9BUY5|ZN426_HUMAN	--*-	Zinc finger protein 426	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR029789 (Protein TRANSPARENT TESTA 1 like)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf02427g01003.1	sp|Q03D26|MNTH_LACC3	*-**	Divalent metal cation transporter MntH	IPR001046 (NRAMP family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01774g02021.1			Unknown protein		
Niben101Ctg16390g00005.1	AT5G57190.1	*-**	phosphatidylserine decarboxylase 2 LENGTH=635	IPR003817 (Phosphatidylserine decarboxylase-related)	GO:0004609 (phosphatidylserine decarboxylase activity), GO:0008654 (phospholipid biosynthetic process)
Niben101Scf03534g01001.1	sp|Q39099|XTH4_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 4	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf06752g02005.1	sp|A8MCX6|TF2B_CALMQ	--*-	Transcription initiation factor IIB		
Niben101Scf03503g01007.1	ref|XP_003603840.1|	***-	Hippocampus abundant transcript-like protein [Medicago truncatula]	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf12969g00003.1	sp|P42751|CCD11_ARATH	***-	Cyclin-D1-1	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf00581g00009.1	sp|Q32KQ2|WDR53_BOVIN	***-	WD repeat-containing protein 53	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02740g11003.1	AT2G22720.2	*-*-	SPT2 chromatin protein LENGTH=672	IPR013256 (Chromatin SPT2)	
Niben101Scf10846g00013.1	sp|O81832|Y4729_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain)	
Niben101Scf03731g02021.1	AT5G54290.2	****	cytochrome c biogenesis protein family LENGTH=355	IPR003834 (Cytochrome c assembly protein, transmembrane domain)	GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0055114 (oxidation-reduction process)
Niben101Scf05229g04013.1	sp|Q9FLF0|RS92_ARATH	****	40S ribosomal protein S9-2	IPR001912 (Ribosomal protein S4/S9, N-terminal), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0006412 (translation), GO:0015935 (small ribosomal subunit), GO:0019843 (rRNA binding)
Niben101Scf02001g02002.1	sp|Q05B78|ZFY21_BOVIN	*-*-	Zinc finger FYVE domain-containing protein 21	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0046872 (metal ion binding)
Niben101Scf03546g01009.1	sp|Q8GYN5|RIN4_ARATH	*-*-	RPM1-interacting protein 4	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf08032g00001.1	sp|P86245|TCPB_MESAU	*-*-	T-complex protein 1 subunit beta (Fragments)	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf04914g00002.1	AT1G29680.1	***-	Protein of unknown function (DUF1264) LENGTH=237	IPR010686 (Protein of unknown function DUF1264)	
Niben101Scf02763g00017.1	sp|Q923L3|CSMD1_MOUSE	--*-	CUB and sushi domain-containing protein 1		
Niben101Scf02280g03001.1	AT2G40095.1	***-	Alpha/beta hydrolase related protein LENGTH=209	IPR019498 (MENTAL domain)	
Niben101Scf00248g00003.1			Unknown protein		
Niben101Scf07709g01017.1	ref|XP_007041405.1|	*-*-	RING/U-box superfamily protein isoform 4 [Theobroma cacao] gb|EOX97236.1| RING/U-box superfamily protein isoform 4 [Theobroma cacao]		
Niben101Scf05109g03003.1	sp|P35614|ERF1Z_ARATH	****	Eukaryotic peptide chain release factor subunit 1-3	IPR004403 (Peptide chain release factor eRF1/aRF1), IPR029064 (50S ribosomal protein L30e-like)	GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf06172g00021.1	gb|KEH40157.1|	***-	FACT complex subunit SSRP1 [Medicago truncatula]	IPR000969 (Structure-specific recognition protein), IPR009071 (High mobility group box domain), IPR011993 (Pleckstrin homology-like domain), IPR013719 (Domain of unknown function DUF1747), IPR024954 (SSRP1 domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf02078g08045.1	sp|Q70Z16|NAP1D_TOBAC	****	Nucleosome assembly protein 1;4	IPR002164 (Nucleosome assembly protein (NAP))	GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf00246g00002.1			Unknown protein		
Niben101Scf05063g03010.1	AT2G06005.1	***-	FRIGIDA interacting protein 1 LENGTH=355	IPR029399 (TMEM192 family)	
Niben101Scf00397g01008.1	emb|CDY37025.1|	***-	BnaA04g26030D [Brassica napus]	IPR016803 (Uncharacterised conserved protein UCP022280)	
Niben101Scf03213g01006.1	AT1G55805.1	***-	BolA-like family protein LENGTH=160	IPR002634 (BolA protein)	
Niben101Scf00589g02009.1	sp|Q6EP49|MAD27_ORYSJ	****	MADS-box transcription factor 27	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04448g02011.1	AT5G60900.1	****	receptor-like protein kinase 1 LENGTH=748	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf02537g02006.1	AT1G22460.1	*-*-	O-fucosyltransferase family protein LENGTH=565	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf11688g01013.1	AT5G16250.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=183		
Niben101Scf01591g00015.1	sp|Q38857|XTH22_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf11383g02014.1	AT5G19460.1	****	nudix hydrolase homolog 20 LENGTH=374	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf06902g02006.1	sp|Q0WPZ6|PP158_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf28554g00003.1	ref|XP_007015082.1|	*-*-	Myosin-related isoform 1 [Theobroma cacao] gb|EOY32701.1| Myosin-related isoform 1 [Theobroma cacao]		
Niben101Scf01054g02001.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf05588g04010.1	sp|P0C1I1|PPID_RHIO9	*-*-	Peptidyl-prolyl cis-trans isomerase D	IPR011990 (Tetratricopeptide-like helical domain), IPR023114 (Elongated TPR repeat-containing domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0005515 (protein binding)
Niben101Scf02864g10002.1	AT4G34760.1	***-	SAUR-like auxin-responsive protein family LENGTH=107	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00056g01003.1	emb|CCA15163.1|	*-*-	conserved hypothetical protein [Albugo laibachii Nc14]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf07024g01003.1	sp|A6NCQ9|RN222_HUMAN	--*-	RING finger protein 222	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02700g02005.1	emb|CDY05764.1|	***-	BnaC07g00390D [Brassica napus]		
Niben101Ctg02218g00001.1	sp|Q55E69|SYS1_DICDI	*-*-	Protein SYS1 homolog	IPR019185 (Integral membrane protein SYS1-related)	
Niben101Scf11355g00003.1	sp|Q9LFT0|TBL19_ARATH	***-	Protein trichome birefringence-like 19	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf04500g00005.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf03114g08007.1	emb|CDX75752.1|	*-*-	BnaC03g38350D [Brassica napus]		
Niben101Scf09078g01011.1	ref|XP_001691526.1|	*-**	iron-sulfur cluster assembly protein [Chlamydomonas reinhardtii] gb|EDP04634.1| iron-sulfur cluster assembly protein [Chlamydomonas reinhardtii]	IPR001075 (NIF system FeS cluster assembly, NifU, C-terminal)	GO:0005506 (iron ion binding), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf04943g01001.1	gb|ABP96804.1|	--*-	receptor-like protein kinase [Capsicum annuum]		
Niben101Scf01676g01002.1	AT1G75440.1	***-	ubiquitin-conjugating enzyme 16 LENGTH=161	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf05645g08004.1	sp|P57057|GLPT_HUMAN	****	Glycerol-3-phosphate transporter	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03150g01017.1	gb|ABN08700.1|	*-*-	Endonuclease/exonuclease/phosphatase [Medicago truncatula]		
Niben101Scf08034g00003.1	AT5G22220.2	****	E2F transcription factor 1 LENGTH=469	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR015633 (E2F Family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005667 (transcription factor complex), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11214g00002.1	sp|Q91Z98|CHIL4_MOUSE	****	Chitinase-like protein 4	IPR017853 (Glycoside hydrolase superfamily), IPR029070 (Chitinase insertion domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004568 (chitinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process)
Niben101Scf05122g00007.1	AT1G19640.1	*-**	jasmonic acid carboxyl methyltransferase LENGTH=389	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02085g20005.1	AT5G37070.1	***-	Protein of unknown function, DUF538 LENGTH=170	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf00074g02025.1	sp|Q7XBQ9|RGA2_SOLBU	*-*-	Disease resistance protein RGA2	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf11773g01006.1	gb|ACG39425.1|	****	ubiquitin-protein ligase/ zinc ion binding protein [Zea mays]	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06042g03007.1	AT2G06520.1	****	photosystem II subunit X LENGTH=116	IPR009518 (Photosystem II PsbX)	GO:0009523 (photosystem II), GO:0015979 (photosynthesis), GO:0016020 (membrane)
Niben101Scf02979g04005.1	sp|Q9FLJ2|NC100_ARATH	*-*-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf14410g00001.1	sp|Q6C9R9|SFH5_YARLI	*-*-	Phosphatidylinositol transfer protein SFH5	IPR001251 (CRAL-TRIO domain), IPR009038 (GOLD), IPR011074 (CRAL/TRIO, N-terminal domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf01369g04017.1	sp|Q08DI6|RNF11_BOVIN	*-*-	RING finger protein 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01433g04010.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf09157g00010.1	AT3G60390.1	*-*-	homeobox-leucine zipper protein 3 LENGTH=315	IPR003106 (Leucine zipper, homeobox-associated), IPR006712 (HD-ZIP protein, N-terminal), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf17276g00006.1	AT1G68910.1	***-	WPP domain-interacting protein 2 LENGTH=627		
Niben101Scf02024g00002.1	sp|Q9S9M3|WAKLC_ARATH	--*-	Wall-associated receptor kinase-like 3		
Niben101Scf01072g01011.1	sp|Q5ZLV2|PPIL3_CHICK	-***	Peptidyl-prolyl cis-trans isomerase-like 3	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf03188g06006.1	sp|P57699|ATKB_HALSA	****	Potassium-transporting ATPase B chain	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0006812 (cation transport), GO:0016021 (integral component of membrane), GO:0019829 (cation-transporting ATPase activity), GO:0046872 (metal ion binding)
Niben101Scf08338g01017.1	AT3G21690.1	*-*-	MATE efflux family protein LENGTH=506	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03860g03005.1			Unknown protein		
Niben101Scf00964g00003.1	AT2G28260.1	****	cyclic nucleotide-gated channel 15 LENGTH=678	IPR005821 (Ion transport domain), IPR014710 (RmlC-like jelly roll fold)	GO:0005216 (ion channel activity), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02187g00009.1	emb|CDX83671.1|	***-	BnaC07g24110D [Brassica napus]		
Niben101Scf01037g10004.1	sp|Q9FKH6|B561P_ARATH	*-*-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain)	
Niben101Scf02397g00009.1	AT3G10250.1	***-	Plant protein 1589 of unknown function LENGTH=324	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf04875g00020.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2		
Niben101Scf06287g00001.1	ref|NP_001148234.1|	****	carboxylic ester hydrolase/ hydrolase, acting on ester bonds [Zea mays] gb|ACG30251.1| carboxylic ester hydrolase/ hydrolase, acting on ester bonds [Zea mays]	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf07549g01011.1	sp|Q5D869|NRPE1_ARATH	*-*-	DNA-directed RNA polymerase V subunit 1	IPR015801 (Copper amine oxidase, N2/N3-terminal), IPR021602 (Protein of unknown function DUF3223)	GO:0005507 (copper ion binding), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding)
Niben101Scf02413g00004.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf00414g10014.1	sp|Q651X6|CSLE6_ORYSJ	****	Cellulose synthase-like protein E6	IPR005150 (Cellulose synthase)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf00439g04003.1	sp|Q8GZA6|PP113_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf13683g02003.1	AT3G50140.1	***-	Plant protein of unknown function (DUF247) LENGTH=539	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf04894g00023.1	AT3G22260.2	***-	Cysteine proteinases superfamily protein LENGTH=245	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf04560g02008.1	sp|Q5BKM3|CHMP3_XENTR	***-	Charged multivesicular body protein 3	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf07060g01002.1	sp|Q08069|RS8_MAIZE	***-	40S ribosomal protein S8	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03048g01011.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC)	GO:0005515 (protein binding), GO:0043531 (ADP binding)
Niben101Scf05442g02007.1	sp|Q9LZG0|ADK2_ARATH	****	Adenosine kinase 2	IPR001805 (Adenosine kinase), IPR029056 (Ribokinase-like)	GO:0004001 (adenosine kinase activity), GO:0006166 (purine ribonucleoside salvage), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf03494g10009.1	sp|A4IF93|TBCC1_BOVIN	*-*-	TBCC domain-containing protein 1	IPR016098 (Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal), IPR017901 (C-CAP/cofactor C-like domain)	GO:0000902 (cell morphogenesis)
Niben101Scf02107g07003.1	gb|ENH73673.1|	--*-	Tenascin [Fusarium oxysporum f. sp. cubense race 1]		
Niben101Scf17111g00001.1	emb|CDY44092.1|	***-	BnaA01g13000D [Brassica napus]		
Niben101Scf06614g02002.1	AT4G36180.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1136	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf03377g05003.1	AT5G03540.3	****	exocyst subunit exo70 family protein A1 LENGTH=664	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf01943g09002.1	sp|Q9FGK4|B561J_ARATH	*-*-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain)	
Niben101Scf01859g07007.1	sp|A1JPA1|MDTK_YERE8	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf10524g05006.1	sp|Q0E1D7|FLP3_ORYSJ	***-	Flowering-promoting factor 1-like protein 3		
Niben101Scf03560g00003.1	sp|C0ZPK5|FTSH_RHOE4	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf03282g02005.1	AT4G20380.8	***-	LSD1 zinc finger family protein LENGTH=210	IPR005735 (Zinc finger, LSD1-type)	
Niben101Scf03624g04012.1	sp|O04514|OPT2_ARATH	***-	Oligopeptide transporter 2	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf03768g00003.1			Unknown protein		
Niben101Scf05912g02005.1	AT5G23700.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=573		
Niben101Scf02461g00001.1	sp|Q24JL3|STR2_ARATH	*-**	Thiosulfate/3-mercaptopyruvate sulfurtransferase 2	IPR001763 (Rhodanese-like domain)	GO:0004792 (thiosulfate sulfurtransferase activity)
Niben101Scf01051g07010.1	AT3G60690.1	***-	SAUR-like auxin-responsive protein family LENGTH=170	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00825g00018.1	sp|Q54GB2|CTSL2_DICDI	*-**	CTD small phosphatase-like protein 2	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding), GO:0016791 (phosphatase activity)
Niben101Scf01506g03005.1	sp|Q5JFG9|SPEE_THEKO	***-	Polyamine aminopropyl transferase	IPR001045 (Spermidine/spermine synthases family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003824 (catalytic activity)
Niben101Scf02215g05009.1	sp|Q2KHN1|RN151_HUMAN	--*-	RING finger protein 151	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00218g02004.1	AT2G38740.1	****	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=244	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf02486g01012.1	sp|B1XW11|SYQ_POLNS	*-**	Glutamine--tRNA ligase	IPR000924 (Glutamyl/glutaminyl-tRNA synthetase)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006412 (translation), GO:0006418 (tRNA aminoacylation for protein translation), GO:0016876 (ligase activity, forming aminoacyl-tRNA and related compounds), GO:0043039 (tRNA aminoacylation)
Niben101Scf01561g01002.1	AT4G05110.1	****	equilibrative nucleoside transporter 6 LENGTH=418	IPR002259 (Equilibrative nucleoside transporter)	GO:0005337 (nucleoside transmembrane transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf05032g01009.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf01326g05006.1	sp|Q2LVL0|MSBA_SYNAS	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Ctg14135g00002.1	AT1G23480.1	*-*-	cellulose synthase-like A3 LENGTH=556		
Niben101Scf07850g02002.1	sp|Q84WU6|ARFQ_ARATH	*-*-	Auxin response factor 17	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf11142g00001.1	sp|Q9LM33|MPK8_ARATH	*-*-	Mitogen-activated protein kinase 8		
Niben101Scf01150g00005.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00167g04020.1	ref|NP_001045217.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf03645g04014.1	sp|Q9FLS0|FB253_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf07061g01018.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02869g15008.1	AT1G19640.1	****	jasmonic acid carboxyl methyltransferase LENGTH=389	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf08162g00026.1			Unknown protein		
Niben101Scf10575g00015.1			Unknown protein		
Niben101Scf06674g03002.1	sp|P40468|TAO3_YEAST	--*-	Cell morphogenesis protein PAG1	IPR025614 (Cell morphogenesis protein N-terminal)	
Niben101Scf07608g01010.1	AT2G14095.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 106 Blast hits to 103 proteins in 21 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 4; Plants - 87; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). LENGTH=234		
Niben101Scf01155g05011.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf01119g00006.1	AT1G53210.1	****	sodium/calcium exchanger family protein / calcium-binding EF hand family protein LENGTH=585	IPR004837 (Sodium/calcium exchanger membrane region), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00317g08002.1	AT5G47510.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=376	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf07063g00001.1	AT4G23810.1	****	WRKY family transcription factor LENGTH=324	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05823g02011.1	sp|Q6ZDF3|TRAB1_ORYSJ	--**	bZIP transcription factor TRAB1	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00713g05003.1	sp|B7LRL5|AAEB_ESCF3	--*-	p-hydroxybenzoic acid efflux pump subunit AaeB	IPR006726 (Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein)	GO:0005886 (plasma membrane), GO:0006810 (transport)
Niben101Scf00679g00001.1	sp|Q9LRJ9|CRR38_ARATH	***-	Cysteine-rich repeat secretory protein 38	IPR002902 (Gnk2-homologous domain)	
Niben101Scf06026g00009.1	sp|Q2RAX3|CIPKX_ORYSJ	*-**	CBL-interacting protein kinase 33	IPR011009 (Protein kinase-like domain), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06709g04002.1	sp|Q7SXW3|LRC40_DANRE	*-*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR003591 (Leucine-rich repeat, typical subtype), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0043531 (ADP binding)
Niben101Scf03437g02009.1	emb|CDX81747.1|	***-	BnaC08g38540D [Brassica napus]	IPR013328 (Dehydrogenase, multihelical)	GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00321g03004.1			Unknown protein		
Niben101Scf05123g02008.1	sp|Q6K7E6|ERF1_ORYSJ	****	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf13167g00008.1	sp|Q7T012|HDHD3_DANRE	****	Haloacid dehalogenase-like hydrolase domain-containing protein 3	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf04323g02008.1	sp|Q5BQN5|WAP_SOLLC	***-	WPP domain-associated protein		
Niben101Scf02774g03007.1	sp|Q84L14|NCBP2_ORYSJ	--**	Nuclear cap-binding protein subunit 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf28780g01004.1	sp|Q5QA74|RPOA_ACOGR	*-**	DNA-directed RNA polymerase subunit alpha	IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain), IPR011262 (DNA-directed RNA polymerase, insert domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf09189g01020.1	AT4G22810.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=324	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf02786g01013.1			Unknown protein		
Niben101Scf01555g01018.1	AT4G14600.1	*-*-	Target SNARE coiled-coil domain protein LENGTH=137		
Niben101Scf03294g00006.1	sp|Q9FLS0|FB253_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf01020g00002.1			Unknown protein	IPR005819 (Histone H5)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0006334 (nucleosome assembly)
Niben101Ctg16058g00002.1	sp|Q7WKG2|AQPZ_BORBR	***-	Aquaporin Z	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03917g00014.1	AT1G22930.1	***-	T-complex protein 11 LENGTH=1131	IPR008862 (T-complex 11)	
Niben101Scf10707g00003.1			Unknown protein		
Niben101Scf05977g01008.1	AT2G33170.1	****	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01496g00007.1	sp|Q8RA26|ISPT_CALS4	****	Isoprenyl transferase	IPR001441 (Decaprenyl diphosphate synthase-like)	GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf01636g02006.1	AT1G64600.1	****	methyltransferases;copper ion binding LENGTH=537	IPR007533 (Cytochrome c oxidase assembly protein CtaG/Cox11), IPR015324 (Ribosomal protein Rsm22, bacterial-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005507 (copper ion binding), GO:0006412 (translation), GO:0008168 (methyltransferase activity)
Niben101Scf06909g00006.1	sp|O49436|PP327_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04015g02024.1	AT5G27395.1	***-	Mitochondrial inner membrane translocase complex, subunit Tim44-related protein LENGTH=313	IPR007379 (Tim44-like domain)	
Niben101Scf04046g01007.1	AT3G18380.2	***-	sequence-specific DNA binding transcription factors;sequence-specific DNA binding LENGTH=349		
Niben101Scf05631g00012.1	sp|A9MEJ6|MDTK_SALAR	--*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf06799g01001.1	sp|P22233|SODC_SPIOL	*-**	Superoxide dismutase [Cu-Zn]	IPR001424 (Superoxide dismutase, copper/zinc binding domain)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02111g00011.1	sp|Q9FJ17|DI197_ARATH	***-	Protein DEHYDRATION-INDUCED 19 homolog 7	IPR008598 (Drought induced 19 protein-like, zinc-binding domain), IPR027935 (Protein dehydration-induced 19, C-terminal)	
Niben101Scf05135g02001.1	sp|P43510|CPR6_CAEEL	****	Cathepsin B-like cysteine proteinase 6	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00248g00005.1	AT5G43750.1	***-	NAD(P)H dehydrogenase 18 LENGTH=212		
Niben101Scf01599g00025.1			Unknown protein		
Niben101Scf02427g01001.1	sp|B3W6P3|MNTH_LACCB	****	Divalent metal cation transporter MntH	IPR001046 (NRAMP family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01448g01003.1	sp|Q9SS98|OLEO5_ARATH	***-	Oleosin 5	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf03036g06009.1	sp|A2WT96|PLA2_ORYSI	***-	Phospholipase A1-II 2	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf02466g01023.1	sp|Q8IWV7|UBR1_HUMAN	*-*-	E3 ubiquitin-protein ligase UBR1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf28139g00001.1			Unknown protein		
Niben101Scf01511g02020.1	AT5G58070.1	***-	temperature-induced lipocalin LENGTH=186	IPR022271 (Lipocalin, ApoD type)	GO:0005215 (transporter activity)
Niben101Scf06942g02010.1	sp|B0Z4M6|RPOC1_OENAR	*-*-	DNA-directed RNA polymerase subunit beta'		
Niben101Scf06806g04011.1	sp|Q9SPM5|APY2_ARATH	***-	Apyrase 2	IPR000407 (Nucleoside phosphatase GDA1/CD39)	GO:0016787 (hydrolase activity)
Niben101Scf04283g10002.1	sp|Q75HV0|CCP31_ORYSJ	****	Cyclin-P3-1	IPR013763 (Cyclin-like), IPR013922 (Cyclin PHO80-like)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0019901 (protein kinase binding)
Niben101Scf07850g08004.1	sp|Q9FMR3|NAC90_ARATH	***-	NAC domain-containing protein 90	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03113g02002.1	sp|Q9HPB8|RL6_HALSA	***-	50S ribosomal protein L6	IPR000702 (Ribosomal protein L6)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf00725g01013.1	sp|Q9M886|LBD41_ARATH	***-	LOB domain-containing protein 41	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf04827g03005.1	sp|Q96321|IMA1_ARATH	***-	Importin subunit alpha-1	IPR002652 (Importin-alpha, importin-beta-binding domain), IPR016024 (Armadillo-type fold), IPR024931 (Importin subunit alpha)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006606 (protein import into nucleus), GO:0008565 (protein transporter activity)
Niben101Scf14973g02004.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf11334g02002.1	sp|B7GV08|DNAJ_ACIB3	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf12083g00014.1	sp|Q9LQR8|PSD3B_ARATH	****	26S proteasome non-ATPase regulatory subunit 3 homolog B	IPR000717 (Proteasome component (PCI) domain), IPR013143 (PCI/PINT associated module), IPR013586 (26S proteasome regulatory subunit, C-terminal)	GO:0000502 (proteasome complex), GO:0005515 (protein binding), GO:0030234 (enzyme regulator activity), GO:0042176 (regulation of protein catabolic process)
Niben101Scf08333g02006.1	sp|Q8VYX0|ILL6_ARATH	****	IAA-amino acid hydrolase ILR1-like 6	IPR002933 (Peptidase M20)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf00264g03022.1	sp|P12470|CB25_NICPL	*-*-	Chlorophyll a-b binding protein E, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf03966g00004.1	sp|Q0V4C4|FES1_PHANO	*-*-	Hsp70 nucleotide exchange factor FES1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf10306g00004.1	sp|Q6AVI0|RSLE2_ORYSJ	--*-	Zinc finger BED domain-containing protein RICESLEEPER 2	IPR025525 (hAT-like transposase, RNase-H fold)	GO:0003677 (DNA binding)
Niben101Scf13103g00009.1	sp|Q9FWX2|NAC7_ARATH	***-	NAC domain-containing protein 7	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04968g00011.1	tpg|DAA39002.1|	*-*-	TPA: hypothetical protein ZEAMMB73_375277 [Zea mays]		
Niben101Scf15739g02007.1	emb|CDX75447.1|	--*-	BnaA01g02550D [Brassica napus]		
Niben101Scf01483g03014.1	sp|P57751|UGPA1_ARATH	*-**	UTP--glucose-1-phosphate uridylyltransferase 1	IPR002618 (UTP--glucose-1-phosphate uridylyltransferase family), IPR007512 (Protein of unknown function DUF543), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0003983 (UTP:glucose-1-phosphate uridylyltransferase activity), GO:0006011 (UDP-glucose metabolic process), GO:0008152 (metabolic process), GO:0070569 (uridylyltransferase activity)
Niben101Scf00854g10048.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf03592g02003.1	sp|Q9SA34|IMDH2_ARATH	--*-	Inosine-5'-monophosphate dehydrogenase 2	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf01350g04024.1	gb|AID60083.1|	*-*-	zinc finger protein 3C [Brassica napus]		
Niben101Scf09015g01005.1	ref|XP_003616141.1|	*-**	E3 ubiquitin-protein ligase SINA-like protein [Medicago truncatula] gb|AES99099.1| seven in absentia family protein [Medicago truncatula]	IPR004162 (E3 ubiquitin-protein ligase SINA like), IPR009071 (High mobility group box domain), IPR019557 (Aminotransferase-like, plant mobile domain)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf08072g02002.1	sp|Q2YEN2|TRIM5_MACAS	--*-	Tripartite motif-containing protein 5	IPR004331 (SPX, N-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09127g00011.1	sp|Q9LZB2|GDL74_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01922g07001.1	sp|Q9ZW28|GSTU3_ARATH	***-	Glutathione S-transferase U3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf00163g07004.1	sp|Q9LSL9|PP445_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02828g04011.1	ref|XP_002532637.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29740.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00578g02002.1	AT5G54530.1	***-	Protein of unknown function, DUF538 LENGTH=161	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf00340g05003.1	gb|AAG37447.1|	*-*-	seed maturation protein LEA 4 [Glycine tomentella]	IPR005513 (Late embryogenesis abundant protein, LEA-25/LEA-D113)	GO:0009790 (embryo development)
Niben101Scf11980g03012.1	sp|Q9ZU35|AB7G_ARATH	***-	ABC transporter G family member 7	IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0016020 (membrane)
Niben101Scf04995g17023.1	AT1G27700.1	***-	Syntaxin/t-SNARE family protein LENGTH=297	IPR010989 (t-SNARE)	GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport), GO:0048193 (Golgi vesicle transport)
Niben101Scf00116g06002.1	AT4G20860.1	****	FAD-binding Berberine family protein LENGTH=530	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01124g27025.1	sp|Q5ZLV2|PPIL3_CHICK	-***	Peptidyl-prolyl cis-trans isomerase-like 3	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf07049g00001.1	sp|Q54YW1|ELMOA_DICDI	*-*-	ELMO domain-containing protein A	IPR006816 (Engulfment/cell motility, ELMO)	GO:0005856 (cytoskeleton), GO:0006909 (phagocytosis)
Niben101Scf09512g03003.1	sp|Q8R1Z9|RN121_MOUSE	--*-	RING finger protein 121	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04008g00012.1	gb|AAU95633.1|	*-*-	R1 [Solanum tuberosum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf01631g00007.1	sp|P25250|CYSP2_HORVU	--*-	Cysteine proteinase EP-B 2		
Niben101Scf07060g00002.1	ref|NP_001078157.1|	*-*-	high chlorophyll fluorescence 243 [Arabidopsis thaliana] gb|AEE75617.1| high chlorophyll fluorescence 243 [Arabidopsis thaliana]		
Niben101Scf00488g03010.1	sp|B5F6Y9|DNAJ_SALA4	***-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf09260g03017.1	sp|Q9SUQ8|DIR6_ARATH	*-*-	Dirigent protein 6	IPR004265 (Plant disease resistance response protein)	
Niben101Scf05520g00001.1	AT1G08720.1	*-**	Protein kinase superfamily protein LENGTH=933	IPR000270 (Phox/Bem1p), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01936g01001.1	emb|CDY63903.1|	*-*-	BnaA01g34680D [Brassica napus]		
Niben101Scf15224g00002.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf06356g00007.1	gb|KEH39503.1|	*-*-	RabGAP/TBC domain protein [Medicago truncatula]		
Niben101Scf31780g00001.1	sp|Q6DRB1|GLE1_DANRE	*-*-	Nucleoporin GLE1	IPR012476 (GLE1-like)	GO:0005643 (nuclear pore), GO:0016973 (poly(A)+ mRNA export from nucleus)
Niben101Scf05928g03009.1	AT2G03350.1	***-	Protein of unknown function, DUF538 LENGTH=179	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf02023g00006.1			Unknown protein		
Niben101Scf06349g02006.1	sp|Q96N64|PWP2A_HUMAN	*-*-	PWWP domain-containing protein 2A	IPR000313 (PWWP domain)	
Niben101Scf00568g04030.1	sp|Q91YE6|IPO9_MOUSE	***-	Importin-9	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf01627g02013.1	AT1G68820.1	*-*-	Transmembrane Fragile-X-F-associated protein LENGTH=468	IPR019396 (Transmembrane Fragile-X-F-associated protein)	
Niben101Scf05201g00002.1	AT5G19420.2	***-	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain LENGTH=1139	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR011993 (Pleckstrin homology-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013591 (Brevis radix (BRX) domain), IPR027988 (Transcription factor  BREVIS RADIX, N-terminal domain)	GO:0046872 (metal ion binding)
Niben101Scf04869g06002.1			Unknown protein		
Niben101Scf01661g02022.1	AT5G08160.1	****	serine/threonine protein kinase 3 LENGTH=347	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05018g01003.1	sp|B4U2H1|ADDA_STREM	--*-	ATP-dependent helicase/nuclease subunit A		
Niben101Scf00142g01013.1			Unknown protein		
Niben101Scf04292g00008.1	sp|B9DFS6|SNX2B_ARATH	***-	Sorting nexin 2B	IPR001683 (Phox homologous domain), IPR015404 (Vps5 C-terminal)	GO:0035091 (phosphatidylinositol binding)
Niben101Scf00278g02001.1	sp|Q6CB69|DED1_YARLI	*-**	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf08300g00001.1			Unknown protein		
Niben101Scf01847g00014.1	sp|P57723|PCBP4_HUMAN	--**	Poly(rC)-binding protein 4	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf01450g04002.1	emb|CDY51239.1|	***-	BnaA03g06990D [Brassica napus]		
Niben101Scf00167g00006.1	sp|Q969E8|TSR2_HUMAN	*-*-	Pre-rRNA-processing protein TSR2 homolog	IPR019398 (Pre-rRNA-processing protein TSR2)	
Niben101Scf05077g01014.1	sp|Q725M6|DNAJ_DESVH	--*-	Chaperone protein DnaJ		
Niben101Scf09004g02011.1	AT5G19430.1	***-	RING/U-box superfamily protein LENGTH=255	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf05579g00001.1	sp|Q71V09|H4_CAPAN	***-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	
Niben101Scf02510g05033.1	sp|Q9SXD8|PPR90_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04020g00002.1	AT5G17230.3	***-	PHYTOENE SYNTHASE LENGTH=437	IPR002060 (Squalene/phytoene synthase)	GO:0009058 (biosynthetic process), GO:0016740 (transferase activity), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf06190g03004.1	sp|Q8KCD1|SYP_CHLTE	****	Proline--tRNA ligase	IPR004154 (Anticodon-binding), IPR017449 (Prolyl-tRNA synthetase, class II)	GO:0000166 (nucleotide binding), GO:0004827 (proline-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006433 (prolyl-tRNA aminoacylation)
Niben101Scf10997g03002.1	ref|NP_176509.1|	--*-	cystatin-related domain protein [Arabidopsis thaliana] hypothetical protein; 89904-88916 [Arabidopsis thaliana] gb|AEE34068.1| cystatin-related domain protein [Arabidopsis thaliana]		
Niben101Scf01817g02021.1	AT1G64720.1	****	Polyketide cyclase/dehydrase and lipid transport superfamily protein LENGTH=385	IPR002913 (START domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf03932g04007.1	sp|Q6GKC1|OAT1_STAAR	***-	Ornithine aminotransferase 1	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00854g08053.1	gb|AAO63621.1|	***-	maturase [Sladenia celastrifolia]	IPR000477 (Reverse transcriptase domain)	
Niben101Scf00505g00009.1	sp|Q56XP4|NHX2_ARATH	****	Sodium/hydrogen exchanger 2	IPR006153 (Cation/H+ exchanger), IPR018422 (Cation/H+ exchanger, CPA1 family)	GO:0005774 (vacuolar membrane), GO:0005886 (plasma membrane), GO:0006812 (cation transport), GO:0006814 (sodium ion transport), GO:0009651 (response to salt stress), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055075 (potassium ion homeostasis), GO:0055085 (transmembrane transport)
Niben101Scf05855g01001.1	sp|P10973|NLTPA_RICCO	****	Non-specific lipid-transfer protein A	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf01375g07001.1	sp|P23935|NDUA5_BOVIN	*-*-	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	IPR006806 (ETC complex I subunit)	GO:0005743 (mitochondrial inner membrane), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0022904 (respiratory electron transport chain)
Niben101Scf01578g01006.1	AT3G19870.1	***-	unknown protein; Has 84 Blast hits to 64 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). LENGTH=1090		
Niben101Scf01694g09012.1			Unknown protein		
Niben101Scf09170g02013.1	emb|CDX70437.1|	***-	BnaC03g05210D [Brassica napus]	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf02854g08010.1	sp|Q9C7U5|E132_ARATH	***-	Glucan endo-1,3-beta-glucosidase 2	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02847g00039.1	sp|P05499|ATP6_TOBAC	*-*-	ATP synthase subunit a		
Niben101Scf05447g03009.1	sp|Q9LJK1|FUT11_ARATH	****	Glycoprotein 3-alpha-L-fucosyltransferase A	IPR001503 (Glycosyl transferase, family 10)	GO:0006486 (protein glycosylation), GO:0008417 (fucosyltransferase activity), GO:0016020 (membrane)
Niben101Scf02044g02006.1	gb|ACG40676.1|	***-	p8MTCP1 [Zea mays]	IPR009069 (Cysteine alpha-hairpin motif superfamily), IPR010625 (CHCH)	
Niben101Scf17051g00015.1			Unknown protein		
Niben101Scf02467g01046.1	ref|XP_002324630.1|	--*-	BSD domain-containing family protein [Populus trichocarpa] gb|EEF03195.1| BSD domain-containing family protein [Populus trichocarpa]		
Niben101Scf18396g00002.1	sp|A6UWV8|RS5_META3	****	30S ribosomal protein S5	IPR000851 (Ribosomal protein S5), IPR014720 (Double-stranded RNA-binding domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf00276g07014.1	sp|Q9LQL2|PTR14_ARATH	*-*-	Protein NRT1/ PTR FAMILY 7.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00332g05007.1	sp|Q96NC0|ZMAT2_HUMAN	***-	Zinc finger matrin-type protein 2		
Niben101Scf08321g02006.1	sp|A4SHC0|HLDD_AERS4	*-*-	ADP-L-glycero-D-manno-heptose-6-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf04794g00018.1	sp|Q9SH26|PP102_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf08699g00008.1	sp|Q8VCY6|UTP6_MOUSE	****	U3 small nucleolar RNA-associated protein 6 homolog	IPR003107 (HAT (Half-A-TPR) repeat)	GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Scf05755g02010.1	sp|Q766C2|NEP2_NEPGR	--*-	Aspartic proteinase nepenthesin-2	IPR021109 (Aspartic peptidase domain)	
Niben101Scf01500g06009.1	AT5G47390.1	***-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02892g02003.1			Unknown protein		
Niben101Scf03099g00007.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02318g02002.1	sp|B7JWV1|RS20_CYAP8	--*-	30S ribosomal protein S20	IPR002583 (Ribosomal protein S20)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02069g01002.1	AT5G41810.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=288		
Niben101Scf03116g00001.1	sp|O43390|HNRPR_HUMAN	--*-	Heterogeneous nuclear ribonucleoprotein R		
Niben101Scf16755g00003.1	AT3G51370.1	****	Protein phosphatase 2C family protein LENGTH=379	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf08504g04007.1	sp|P46903|NATA_BACSU	*-**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf04608g05035.1	AT5G03540.3	*-**	exocyst subunit exo70 family protein A1 LENGTH=664	IPR004140 (Exocyst complex protein Exo70), IPR004827 (Basic-leucine zipper domain), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0006887 (exocytosis), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01681g10022.1	sp|F4K5L5|TBL16_ARATH	*-*-	Protein trichome birefringence-like 16	IPR026057 (PC-Esterase)	
Niben101Scf05042g00002.1	AT1G14590.1	***-	Nucleotide-diphospho-sugar transferase family protein LENGTH=386	IPR005069 (Nucleotide-diphospho-sugar transferase)	
Niben101Scf05056g03023.1	AT1G63120.1	***-	RHOMBOID-like 2 LENGTH=317	IPR002610 (Peptidase S54, rhomboid)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf00603g02008.1	sp|Q9ZPY2|LAC6_ARATH	***-	Laccase-6	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00472g03005.1	AT1G22930.1	***-	T-complex protein 11 LENGTH=1131	IPR008862 (T-complex 11)	
Niben101Scf12011g00011.1			Unknown protein		
Niben101Scf07567g01003.1	ref|NP_001061987.1|	*-*-	product [Oryza sativa Japonica Group]	IPR006904 (Protein of unknown function DUF716 (TMEM45))	
Niben101Scf00519g00012.1	ref|NP_001052354.1|	***-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf02086g01008.1	sp|Q8TEQ8|PIGO_HUMAN	*-*-	GPI ethanolamine phosphate transferase 3	IPR002591 (Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04765g00011.1	sp|P49094|ASNS_MAIZE	*-*-	Asparagine synthetase [glutamine-hydrolyzing]	IPR024286 (Domain of unknown function DUF3700), IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf07257g00006.1	AT1G29500.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00883g03019.1	sp|P81394|MYB15_ANTMA	*-*-	Myb-related protein 315	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03169g01006.1	emb|CDX76524.1|	***-	BnaA08g08760D [Brassica napus]	IPR007770 (Protein of unknown function DUF679)	
Niben101Scf12205g04018.1	gb|KEH27885.1|	*-*-	flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula]	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf02746g05004.1			Unknown protein		
Niben101Scf15792g00020.1	sp|P42328|ADH3_GEOSE	***-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04632g08003.1	sp|Q9C652|RBP1_ARATH	*-**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03021g02009.1	AT5G49760.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=953	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf01789g04012.1	sp|Q6IRP4|ABHDD_XENLA	***-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05583g00018.1	sp|P53311|MPC3_YEAST	--**	Mitochondrial pyruvate carrier 3	IPR005336 (Mitochondrial pyruvate carrier)	GO:0005743 (mitochondrial inner membrane), GO:0006850 (mitochondrial pyruvate transport)
Niben101Scf04350g03001.1	sp|Q38741|SBP1_ANTMA	****	Squamosa promoter-binding protein 1	IPR017238 (Squamosa promoter-binding protein)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf01764g01011.1	AT1G74055.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=144		
Niben101Scf02460g03003.1	sp|Q9XG77|PSA6_TOBAC	*-**	Proteasome subunit alpha type-6	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex)
Niben101Scf00730g01012.1	AT3G09690.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=527	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Ctg09105g00002.1	sp|P35614|ERF1Z_ARATH	*-**	Eukaryotic peptide chain release factor subunit 1-3	IPR004403 (Peptide chain release factor eRF1/aRF1), IPR029064 (50S ribosomal protein L30e-like)	GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf04567g01008.1	sp|Q8L9P8|RLF33_ARATH	*-*-	Protein RALF-like 33	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf03634g09002.1	sp|Q8C754|VPS52_MOUSE	--*-	Vacuolar protein sorting-associated protein 52 homolog	IPR001878 (Zinc finger, CCHC-type), IPR025836 (Zinc knuckle CX2CX4HX4C)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf04231g01029.1	sp|Q9C7F8|AB13B_ARATH	*-*-	ABC transporter B family member 13	IPR011527 (ABC transporter type 1, transmembrane domain)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf02922g00006.1	emb|CDY00790.1|	***-	BnaC03g37740D [Brassica napus]		
Niben101Scf03439g02009.1	gb|KEH44548.1|	*-*-	pollen protein Ole E I-like protein [Medicago truncatula]	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf06045g00013.1	gb|KEH18340.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf01393g02007.1	emb|CDY01313.1|	***-	BnaA07g10860D [Brassica napus]		
Niben101Scf03903g03002.1	sp|Q8S8N2|CLE5_ARATH	-**-	CLAVATA3/ESR (CLE)-related protein 5		
Niben101Scf02414g03013.1	sp|Q9DB16|CB39L_MOUSE	--*-	Calcium-binding protein 39-like	IPR011989 (Armadillo-like helical), IPR013878 (Mo25-like)	
Niben101Scf03479g05047.1	gb|AEE81066.1|	****	ubiquitin-protein ligase/zinc ion binding protein [Triticum aestivum]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03634g09001.1	AT5G17980.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1049	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf12866g00024.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain)	GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf38401g00004.1	sp|Q7TNU6|ZN250_MOUSE	*-*-	Zinc finger protein 250	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR022755 (Zinc finger, double-stranded RNA binding)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf07939g00017.1	sp|Q0WNP3|PP319_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00542g05008.1	AT5G39840.1	***-	ATP-dependent RNA helicase, mitochondrial, putative LENGTH=776	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR022192 (Mitochondrial degradasome RNA helicase subunit, C-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0016817 (hydrolase activity, acting on acid anhydrides)
Niben101Scf00059g00006.1	sp|P40972|PLY_TOBAC	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf01956g02003.1	sp|Q86WV5|TEN1L_HUMAN	--**	CST complex subunit TEN1	IPR029146 (CST complex subunit Ten1, animal and plant type)	GO:0003697 (single-stranded DNA binding), GO:0070188 (Stn1-Ten1 complex)
Niben101Scf01518g00010.1			Unknown protein		
Niben101Scf00138g05022.1			Unknown protein		
Niben101Scf07706g00019.1	sp|O04319|PABP6_ARATH	****	Polyadenylate-binding protein 6	IPR006515 (Polyadenylate binding protein, human types 1, 2, 3, 4), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf02461g08006.1			Unknown protein		
Niben101Scf04528g13017.1	sp|Q4HTT1|H2A_GIBZE	***-	Histone H2A	IPR009072 (Histone-fold)	
Niben101Scf07364g00017.1	sp|Q9LT08|PSDE_ARATH	***-	26S proteasome non-ATPase regulatory subunit 14 homolog	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR024969 (Rpn11/EIF3F C-terminal domain)	GO:0005515 (protein binding)
Niben101Scf02286g00010.1	sp|Q479X4|F16A2_DECAR	*-**	Fructose-1,6-bisphosphatase class 1 2	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf02077g08018.1	AT5G33320.1	***-	Glucose-6-phosphate/phosphate translocator-related LENGTH=408	IPR004696 (Triose phosphate/phosphoenolpyruvate translocator), IPR004853 (Triose-phosphate transporter domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf02798g00040.1	sp|P15688|NU2M_BETVU	*-*-	NADH-ubiquinone oxidoreductase chain 2		
Niben101Scf01189g02001.1	sp|Q9SVM0|Y3078_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold)	
Niben101Scf02440g00011.1	AT1G68670.1	***-	myb-like transcription factor family protein LENGTH=354	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00878g02003.1			Unknown protein		
Niben101Scf02939g02006.1	sp|C1CWW2|G6PI_DEIDV	****	Glucose-6-phosphate isomerase	IPR001672 (Phosphoglucose isomerase (PGI)), IPR023096 (Phosphoglucose isomerase, C-terminal)	GO:0004347 (glucose-6-phosphate isomerase activity), GO:0006094 (gluconeogenesis), GO:0006096 (glycolytic process)
Niben101Scf02714g06007.1	sp|P52948|NUP98_HUMAN	*-**	Nuclear pore complex protein Nup98-Nup96	IPR007230 (Peptidase S59, nucleoporin)	GO:0005643 (nuclear pore), GO:0006810 (transport)
Niben101Scf03076g02008.1	sp|Q9STF0|LRKS3_ARATH	--*-	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01313g03006.1	ref|NP_001078753.1|	*-*-	ECA1 gametogenesis related family protein [Arabidopsis thaliana] gb|AED96401.1| uncharacterized protein [Arabidopsis thaliana]	IPR008502 (Prolamin-like domain)	
Niben101Scf01062g08013.1	sp|F4KIB2|TMN8_ARATH	***-	Transmembrane 9 superfamily member 8	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf01102g05005.1	sp|O23090|BH014_ARATH	***-	Transcription factor bHLH14	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf00340g07001.1	sp|Q9H2J4|PDCL3_HUMAN	***-	Phosducin-like protein 3	IPR012336 (Thioredoxin-like fold)	
Niben101Scf01072g01010.1	sp|Q5ZLV2|PPIL3_CHICK	****	Peptidyl-prolyl cis-trans isomerase-like 3	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf10712g00033.1	gb|AAM66959.1|	*-*-	plastid protein [Arabidopsis thaliana]		
Niben101Scf01611g04022.1	AT2G25800.1	***-	Protein of unknown function (DUF810) LENGTH=987	IPR008528 (Protein of unknown function DUF810)	
Niben101Scf00328g02002.1	gb|ABF98856.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf03138g01042.1	AT5G04820.1	***-	ovate family protein 13 LENGTH=260	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf02073g02001.1	sp|B9K734|DNLJ_THENN	--*-	DNA ligase	IPR010994 (RuvA domain 2-like)	
Niben101Scf02892g02004.1	sp|Q9FVW4|RENT3_ARATH	*-*-	Regulator of nonsense transcripts UPF3	IPR005120 (Regulator of nonsense-mediated decay, UPF3)	GO:0000166 (nucleotide binding)
Niben101Scf00528g01003.1	AT2G32850.2	****	Protein kinase superfamily protein LENGTH=670	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02705g01018.1	sp|Q9Z269|VAPB_RAT	*-**	Vesicle-associated membrane protein-associated protein B	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf06218g04009.1			Unknown protein		
Niben101Scf01371g07009.1	gb|KEH36144.1|	***-	DUF4091 domain protein [Medicago truncatula]		
Niben101Scf03934g00018.1	sp|A8ACD2|RL14_IGNH4	***-	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	
Niben101Scf03723g02004.1	AT5G41060.1	*-**	DHHC-type zinc finger family protein LENGTH=410	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf00505g04017.1	sp|Q940Y5|PIN7_ARATH	*-**	Auxin efflux carrier component 7	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf16197g02009.1	sp|Q3B724|CALS5_ARATH	--*-	Callose synthase 5		
Niben101Scf00732g03001.1	ref|NP_001053712.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf27265g00015.1	ref|XP_002515052.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF47606.1| conserved hypothetical protein [Ricinus communis]	IPR027942 (Sieve element occlusion, N-terminal), IPR027944 (Sieve element occlusion, C-terminal)	
Niben101Scf39514g00002.1	sp|A7RFT2|CD123_NEMVE	***-	Cell division cycle protein 123 homolog	IPR009772 (D123)	
Niben101Scf03256g02003.1	AT2G30380.1	*-*-	Plant protein of unknown function (DUF641) LENGTH=519	IPR006943 (Domain of unknown function DUF641, plant)	
Niben101Scf05881g00003.1	sp|P14953|TRPE_CLOTM	****	Anthranilate synthase component 1	IPR019999 (Anthranilate synthase component I - like)	GO:0000162 (tryptophan biosynthetic process), GO:0004049 (anthranilate synthase activity), GO:0009058 (biosynthetic process), GO:0016833 (oxo-acid-lyase activity)
Niben101Scf02955g02004.1	AT5G51790.1	****	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=204	IPR002912 (ACT domain), IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0046983 (protein dimerization activity)
Niben101Scf00161g05002.1	sp|Q8RWE8|GGAP1_ARATH	****	GDP-L-galactose phosphorylase 1	IPR026506 (GDP-L-galactose/GDP-D-glucose phosphorylase)	GO:0080048 (GDP-D-glucose phosphorylase activity)
Niben101Scf04690g02006.1	sp|Q8GZ13|BEE1_ARATH	--*-	Transcription factor BEE 1	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01037g10003.1	sp|Q9FGK4|B561J_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR017214 (Uncharacterised conserved protein UCP037471)	
Niben101Scf00369g08005.1	sp|P15252|REF_HEVBR	***-	Rubber elongation factor protein	IPR008802 (Rubber elongation factor)	
Niben101Scf09131g00004.1	sp|Q93ZT5|EDL3_ARATH	*-*-	EID1-like F-box protein 3		
Niben101Scf04713g00016.1	AT2G23910.1	****	NAD(P)-binding Rossmann-fold superfamily protein LENGTH=304	IPR016040 (NAD(P)-binding domain)	GO:0003854 (3-beta-hydroxy-delta5-steroid dehydrogenase activity), GO:0006694 (steroid biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf01734g01060.1	sp|A9B477|NUOA_HERA2	****	NADH-quinone oxidoreductase subunit A	IPR000440 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03907g02010.1	sp|P44933|KEFX_HAEIN	***-	Glutathione-regulated potassium-efflux system protein	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf09696g00030.1			Unknown protein		
Niben101Scf01310g01008.1	emb|CDX79607.1|	*-*-	BnaC03g19430D [Brassica napus]		
Niben101Scf02516g00006.1	AT5G42570.1	****	B-cell receptor-associated 31-like LENGTH=218	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf08940g01008.1	sp|Q9LSD8|MUB4_ARATH	*-*-	Membrane-anchored ubiquitin-fold protein 4	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf04788g00018.1	sp|Q05946|UTP13_YEAST	--*-	U3 small nucleolar RNA-associated protein 13	IPR012952 (BING4, C-terminal domain), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Ctg09831g00001.1	sp|Q50940|CAH_NEIGO	*-*-	Carbonic anhydrase	IPR001148 (Alpha carbonic anhydrase), IPR023561 (Carbonic anhydrase, alpha-class)	
Niben101Scf05348g01026.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08651g04014.1	sp|Q9C6W4|BGA15_ARATH	***-	Beta-galactosidase 15	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf04763g02012.1	gb|AES67643.2|	*-*-	rRNA-processing protein PIN domain protein [Medicago truncatula]	IPR006984 (rRNA-processing protein Fcf1/Utp23)	GO:0032040 (small-subunit processome)
Niben101Scf04918g08010.1	gb|KEH42665.1|	*-*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf05519g01010.1			Unknown protein		
Niben101Scf05437g01013.1	ref|XP_003601184.1|	-**-	Phloem specific protein [Medicago truncatula] gb|AES71435.1| phloem specific protein [Medicago truncatula]		
Niben101Scf08415g01034.1	gb|KEH43713.1|	***-	myosin heavy chain-like protein [Medicago truncatula]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf05917g01021.1	gb|ABN09101.1|	***-	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	
Niben101Scf07007g00008.1	sp|Q9FPS9|UBP15_ARATH	--*-	Ubiquitin carboxyl-terminal hydrolase 15		
Niben101Scf02822g06014.1	sp|Q9C5H9|GACP2_ARATH	***-	Gamma-tubulin complex component 2	IPR007259 (Gamma-tubulin complex component protein)	GO:0000226 (microtubule cytoskeleton organization), GO:0000922 (spindle pole), GO:0005815 (microtubule organizing center)
Niben101Scf01985g04013.1	sp|F4JI46|RGAP2_ARATH	***-	Rho GTPase-activating protein 2	IPR000095 (CRIB domain), IPR008936 (Rho GTPase activation protein)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf05349g02010.1			Unknown protein		
Niben101Scf00779g04004.1	sp|Q9FPT1|UBP12_ARATH	--*-	Ubiquitin carboxyl-terminal hydrolase 12	IPR008974 (TRAF-like)	GO:0005515 (protein binding)
Niben101Scf03175g00001.1	AT5G19760.1	***-	Mitochondrial substrate carrier family protein LENGTH=298	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf12135g00014.1	AT1G69720.1	****	heme oxygenase 3 LENGTH=285	IPR016053 (Haem oxygenase-like), IPR016951 (Haem oxygenase (decyclizing), plant)	GO:0004392 (heme oxygenase (decyclizing) activity), GO:0006788 (heme oxidation), GO:0055114 (oxidation-reduction process)
Niben101Scf01276g00002.1	sp|Q9XED8|ARFI_ARATH	*-**	Auxin response factor 9	IPR010525 (Auxin response factor)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone)
Niben101Scf15752g00020.1	sp|Q8GY42|NAC25_ARATH	--**	NAC transcription factor 25	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11953g00003.1	ref|XP_002521949.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF40353.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05095g01016.1	sp|Q8S4Y1|THIC1_ARATH	--*-	Acetyl-CoA acetyltransferase, cytosolic 1		
Niben101Ctg01329g00003.1	sp|Q0D9R7|ARFS_ORYSJ	*-**	Auxin response factor 19	IPR010525 (Auxin response factor)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone)
Niben101Scf09678g00017.1	gb|AGK44858.1|	*-*-	acyl-CoA thioesterase [Citrus reticulata]		
Niben101Scf01582g05008.1	sp|O00410|IPO5_HUMAN	*-*-	Importin-5	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf06807g02006.1	sp|Q9XZE5|PP2AA_DICDI	*-*-	Serine/threonine-protein phosphatase 2A catalytic subunit A	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf01661g02021.1	AT1G26190.1	*-*-	Phosphoribulokinase / Uridine kinase family LENGTH=674		
Niben101Scf06218g02001.1	sp|Q8XIT1|DNAJ_CLOPE	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf01219g06023.1	AT3G23510.1	***-	Cyclopropane-fatty-acyl-phospholipid synthase LENGTH=867	IPR003333 (Mycolic acid cyclopropane synthase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008610 (lipid biosynthetic process)
Niben101Scf03488g04008.1	gb|AAT66777.2|	*-*-	Late blight resistance protein, putative [Solanum demissum]		
Niben101Scf03035g02003.1	sp|Q9ZWA1|C3H2_ARATH	***-	Zinc finger CCCH domain-containing protein 2	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf11177g00009.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf00268g04008.1	sp|O23169|PP353_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00830g03002.1	sp|Q8S8I1|QWRF3_ARATH	***-	QWRF motif-containing protein 3	IPR007573 (Protein of unknown function DUF566)	
Niben101Scf09101g04023.1	sp|Q9LZX1|LOR15_ARATH	***-	Protein LURP-one-related 15	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf09628g00001.1	AT2G35585.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=156		
Niben101Scf09523g01012.1	dbj|BAB09366.1|	*-*-	aspartyl protease-like [Arabidopsis thaliana]		
Niben101Scf10086g01006.1	sp|Q54SA1|PLDZ_DICDI	***-	Phospholipase D Z	IPR001736 (Phospholipase D/Transphosphatidylase), IPR025202 (Phospholipase D-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01037g09001.1	sp|Q9SJ81|FLA7_ARATH	*-*-	Fasciclin-like arabinogalactan protein 7	IPR000782 (FAS1 domain)	
Niben101Scf01175g05008.1	AT3G15350.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=424	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf00278g03012.1	ref|XP_002518999.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF43532.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04146g01022.1	gb|AES91767.2|	*-*-	DnaJ heat shock amino-terminal domain protein [Medicago truncatula]	IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf00668g02007.1	sp|P0CR79|HSE1_CRYNB	--*-	Class E vacuolar protein-sorting machinery protein HSE1	IPR004152 (GAT domain), IPR008942 (ENTH/VHS)	GO:0005622 (intracellular), GO:0006886 (intracellular protein transport)
Niben101Scf05385g04007.1	gb|ADQ73987.1|	*-*-	dehydrin [Solanum peruvianum]	IPR000167 (Dehydrin)	GO:0006950 (response to stress), GO:0009415 (response to water)
Niben101Scf02125g01012.1	emb|CAB10337.1|	--*-	reverse transcriptase like protein [Arabidopsis thaliana] emb|CAB78601.1| reverse transcriptase like protein [Arabidopsis thaliana]		
Niben101Scf00105g00007.1			Unknown protein		
Niben101Scf06919g00016.1	sp|Q9SUI4|PSAL_ARATH	*-**	Photosystem I reaction center subunit XI, chloroplastic	IPR003757 (Photosystem I PsaL, reaction centre subunit XI)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf06091g04005.1	sp|Q9C5T4|WRK18_ARATH	****	WRKY transcription factor 18	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07020g00013.1	AT3G09850.1	***-	D111/G-patch domain-containing protein LENGTH=781		
Niben101Scf01237g09001.1	sp|Q7XT39|EXPB5_ORYSJ	***-	Expansin-B5	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0019953 (sexual reproduction)
Niben101Scf04417g00033.1	gb|AHD24918.1|	***-	CER1 [Brassica napus]	IPR021940 (Uncharacterised domain Wax2, C-terminal)	
Niben101Scf00116g06001.1	AT4G20860.1	****	FAD-binding Berberine family protein LENGTH=530	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00466g04034.1	sp|O45379|ARL3_CAEEL	***-	ADP-ribosylation factor-like protein 3	IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf03129g03005.1	AT1G71050.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=152	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf07765g00004.1	sp|Q07G10|ALKB8_XENTR	***-	Alkylated DNA repair protein alkB homolog 8	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf06902g02007.1	sp|G5CEW6|IF4G_WHEAT	*-*-	Eukaryotic translation initiation factor 4G	IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf03266g05009.1	sp|P49842|STK19_HUMAN	--*-	Serine/threonine-protein kinase 19		
Niben101Scf00980g01002.1	AT2G41250.1	****	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=290	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf00056g01002.1	sp|Q8VYR0|MCU5_ARATH	*-*-	Calcium uniporter protein 5, mitochondrial		
Niben101Scf11383g02015.1	sp|P74306|ZDS_SYNY3	***-	Zeta-carotene desaturase	IPR002937 (Amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00870g16006.1	sp|Q7RV88|IF4A_NEUCR	****	ATP-dependent RNA helicase eIF4A	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf10210g00005.1	sp|Q5QM99|RL37A_ORYSJ	***-	60S ribosomal protein L37a	IPR002674 (Ribosomal protein L37ae), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07334g00001.1	sp|Q9SX31|PERK9_ARATH	--*-	Proline-rich receptor-like protein kinase PERK9		
Niben101Scf06207g02002.1	dbj|BAD66709.1|	--*-	orf177 [Beta vulgaris subsp. vulgaris]		
Niben101Scf03363g01009.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04968g00010.1	ref|NP_001065881.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAF27726.1| Os11g0175900, partial [Oryza sativa Japonica Group]		
Niben101Scf12785g00013.1			Unknown protein		
Niben101Scf02816g07001.1	sp|Q5RFB3|PEPD_PONAB	***-	Xaa-Pro dipeptidase	IPR000994 (Peptidase M24, structural domain), IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	GO:0004177 (aminopeptidase activity), GO:0030145 (manganese ion binding)
Niben101Scf00085g01014.1	sp|Q9SWB4|PARP3_SOYBN	*-*-	Poly [ADP-ribose] polymerase 3	IPR001357 (BRCT domain)	
Niben101Scf02685g00006.1	sp|B2UE66|FTSH_RALPJ	*-**	ATP-dependent zinc metalloprotease FtsH	IPR000642 (Peptidase M41), IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis)
Niben101Scf14872g00005.1	sp|Q8VHH5|AGAP3_MOUSE	*-**	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf01863g00006.1	emb|CDY22603.1|	***-	BnaC08g42370D [Brassica napus]	IPR016972 (Uncharacterised conserved protein UCP031279)	
Niben101Scf00369g19011.1			Unknown protein		
Niben101Scf07850g08005.1	sp|Q9AST6|VSP55_ARATH	--*-	Vacuolar protein sorting-associated protein 55 homolog	IPR007262 (Vacuolar protein sorting 55)	
Niben101Scf05645g08005.1	gb|ABS82785.1|	--*-	jasmonate-induced protein [Triticum aestivum]	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf01774g02020.1	gb|AAD19776.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf07163g00020.1	sp|P73456|FTSZ_SYNY3	***-	Cell division protein FtsZ	IPR000158 (Cell division protein FtsZ)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005737 (cytoplasm), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf07223g00002.1	sp|O80341|EF102_ARATH	--**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf19446g01002.1	AT2G34160.1	****	Alba DNA/RNA-binding protein LENGTH=130	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Scf03809g01015.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004842 (ubiquitin-protein transferase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016567 (protein ubiquitination), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02467g01003.1	sp|Q9FEW9|OPR3_SOLLC	****	12-oxophytodienoate reductase 3	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07172g00019.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09178g01015.1	sp|Q9C652|RBP1_ARATH	*-**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf08032g00002.1	sp|Q9S7T7|SCC11_ARATH	***-	Sister chromatid cohesion 1 protein 1	IPR006910 (Rad21/Rec8-like protein, N-terminal), IPR023093 (Rad21/Rec8-like protein, C-terminal)	GO:0000228 (nuclear chromosome), GO:0005515 (protein binding)
Niben101Scf10386g00005.1	sp|O04940|CDS1_SOLTU	***-	Phosphatidate cytidylyltransferase	IPR000374 (Phosphatidate cytidylyltransferase)	GO:0016020 (membrane), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04914g00001.1	AT4G18930.1	****	RNA ligase/cyclic nucleotide phosphodiesterase family protein LENGTH=181	IPR009097 (RNA ligase/cyclic nucleotide phosphodiesterase), IPR012386 (2',3'-cyclic-nucleotide 3'-phosphodiesterase)	GO:0004112 (cyclic-nucleotide phosphodiesterase activity)
Niben101Scf02763g01001.1	gb|AIO11838.1|	*-**	heterotrimeric G-protein gamma subunit 5 [Brassica rapa]	IPR015898 (G-protein gamma-like domain)	GO:0004871 (signal transducer activity), GO:0005834 (heterotrimeric G-protein complex), GO:0007186 (G-protein coupled receptor signaling pathway)
Niben101Scf01157g01004.1	gb|ADG38082.1|	*-*-	AT1G76250-like protein [Capsella grandiflora]		
Niben101Scf03978g09020.1	ref|XP_003592209.1|	--*-	Membrane protein, putative [Medicago truncatula]		
Niben101Scf09150g00008.1	AT3G06400.3	*-*-	chromatin-remodeling protein 11 LENGTH=1057		
Niben101Scf00808g05013.1	sp|Q55FS2|STK4L_DICDI	*-**	Serine/threonine-protein kinase 4 homolog B	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf15166g03013.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00764g02012.1	sp|Q8J0Q0|MNS1_CANAX	*-**	Mannosyl-oligosaccharide 1,2-alpha-mannosidase	IPR001382 (Glycoside hydrolase, family 47)	GO:0004571 (mannosyl-oligosaccharide 1,2-alpha-mannosidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane)
Niben101Scf08447g05003.1	AT3G07350.1	***-	Protein of unknown function (DUF506) LENGTH=298	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf00249g00005.1	sp|P53602|MVD1_HUMAN	***-	Diphosphomevalonate decarboxylase	IPR005935 (Diphosphomevalonate/phosphomevalonate decarboxylase)	GO:0008299 (isoprenoid biosynthetic process), GO:0016831 (carboxy-lyase activity)
Niben101Scf06825g03006.1	sp|Q9Y222|DMTF1_HUMAN	*-**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08357g02002.1	AT5G15270.2	****	RNA-binding KH domain-containing protein LENGTH=548	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf04514g03007.1	AT3G02750.3	***-	Protein phosphatase 2C family protein LENGTH=527	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf02078g08044.1	AT3G13800.1	***-	Metallo-hydrolase/oxidoreductase superfamily protein LENGTH=361	IPR001279 (Beta-lactamase-like)	
Niben101Scf10161g00007.1	sp|Q9SYK1|PPR11_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03643g03008.1	sp|Q09413|ELOA1_CAEEL	--*-	Transcription elongation factor B polypeptide 3		
Niben101Scf02292g00005.1	ref|XP_007018532.1|	***-	Glyc , putative [Theobroma cacao]		
Niben101Scf10502g01012.1	sp|Q6GGC1|DNAJ_STAAR	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf06128g00002.1	sp|P11891|PSRP5_PEA	-**-	50S ribosomal protein 5, chloroplastic		
Niben101Scf16254g00013.1	sp|A7KAI2|ATG3_PICAN	--*-	Autophagy-related protein 3	IPR007650 (Zf-FLZ domain)	
Niben101Scf03284g03008.1	sp|B1YIH8|GAL1_EXIS2	****	Galactokinase	IPR006206 (Mevalonate/galactokinase)	GO:0004335 (galactokinase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006012 (galactose metabolic process), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0016773 (phosphotransferase activity, alcohol group as acceptor), GO:0046835 (carbohydrate phosphorylation)
Niben101Ctg13318g00001.1	ref|XP_010097046.1|	--*-	Protein IQ-DOMAIN 1 [Morus notabilis] gb|EXB66847.1| Protein IQ-DOMAIN 1 [Morus notabilis]		
Niben101Scf37453g00002.1	AT5G62150.1	***-	peptidoglycan-binding LysM domain-containing protein LENGTH=102	IPR018392 (LysM domain)	
Niben101Scf00225g04002.1	emb|CDX87124.1|	***-	BnaC09g04390D [Brassica napus]	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf09260g01011.1	AT1G14720.1	****	xyloglucan endotransglucosylase/hydrolase 28 LENGTH=332	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf01085g04006.1			Unknown protein		
Niben101Scf03213g01005.1	AT5G63460.4	*-*-	SAP domain-containing protein LENGTH=174	IPR018276 (Ubiquitin ligase, Det1/DDB1-complexing)	
Niben101Scf01591g00014.1	sp|P24806|XTH24_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 24	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf00063g03008.1	AT2G03350.1	***-	Protein of unknown function, DUF538 LENGTH=179	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf00461g02002.1	sp|O65896|CDA1_ARATH	*-**	Cytidine deaminase 1	IPR016193 (Cytidine deaminase-like)	GO:0003824 (catalytic activity), GO:0004126 (cytidine deaminase activity), GO:0008270 (zinc ion binding), GO:0009972 (cytidine deamination)
Niben101Scf01824g00029.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf02631g04003.1	sp|Q9FXA3|BH095_ARATH	***-	Transcription factor bHLH95	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01209g02016.1	sp|Q56YP2|PI5K1_ARATH	*-**	Phosphatidylinositol 4-phosphate 5-kinase 1	IPR002498 (Phosphatidylinositol-4-phosphate 5-kinase, core), IPR003409 (MORN motif), IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf08465g03001.1	sp|Q6NQ72|THO4D_ARATH	--*-	THO complex subunit 4D		
Niben101Scf00313g00007.1	sp|A2YW91|PLP2_ORYSI	*-*-	Patatin-like protein 2	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf00887g02006.1	sp|P50134|DCOR_DATST	***-	Ornithine decarboxylase	IPR000183 (Ornithine/DAP/Arg decarboxylase), IPR029066 (PLP-binding barrel)	GO:0003824 (catalytic activity), GO:0006596 (polyamine biosynthetic process)
Niben101Scf06155g00005.1	sp|Q6NM73|CRR3_ARATH	***-	Cysteine-rich repeat secretory protein 3	IPR002902 (Gnk2-homologous domain)	
Niben101Scf02360g03005.1	AT4G00990.1	***-	Transcription factor jumonji (jmjC) domain-containing protein LENGTH=840	IPR003347 (JmjC domain)	
Niben101Scf04500g00006.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02430g00010.1	sp|Q6C9R9|SFH5_YARLI	***-	Phosphatidylinositol transfer protein SFH5	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf10067g01005.1	sp|P14232|TGA1A_TOBAC	****	TGACG-sequence-specific DNA-binding protein TGA-1A	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00074g02026.1	sp|Q9CAZ0|SKI24_ARATH	***-	F-box protein SKIP24	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf03092g02006.1	emb|CDY14641.1|	-**-	BnaC02g24720D [Brassica napus]		
Niben101Scf02074g00041.1			Unknown protein		
Niben101Scf01518g02002.1	sp|Q8RWD0|COL16_ARATH	****	Zinc finger protein CONSTANS-LIKE 16	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf09157g00011.1	sp|Q42484|RPS2_ARATH	*-*-	Disease resistance protein RPS2		
Niben101Scf01090g04021.1	sp|Q6Q1P4|SMC1_ARATH	***-	Structural maintenance of chromosomes protein 1	IPR003395 (RecF/RecN/SMC, N-terminal), IPR010935 (SMCs flexible hinge), IPR024704 (Structural maintenance of chromosomes protein), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0007064 (mitotic sister chromatid cohesion), GO:0008278 (cohesin complex), GO:0046982 (protein heterodimerization activity), GO:0051276 (chromosome organization)
Niben101Scf11214g00003.1	sp|A8TX70|CO6A5_HUMAN	--*-	Collagen alpha-5(VI) chain		
Niben101Ctg14954g00005.1	sp|A2YQU8|SLU7_ORYSI	*-*-	Pre-mRNA-splicing factor SLU7	IPR021715 (Pre-mRNA splicing Prp18-interacting factor)	
Niben101Scf15657g02006.1	sp|Q9SU40|SKU5_ARATH	***-	Monocopper oxidase-like protein SKU5	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf18125g00014.1	sp|Q4QSC8|SGO1_MAIZE	--*-	Shugoshin-1	IPR011515 (Shugoshin, C-terminal)	GO:0000775 (chromosome, centromeric region), GO:0005634 (nucleus), GO:0045132 (meiotic chromosome segregation)
Niben101Scf17839g03002.1	sp|Q9ZUU0|WRK44_ARATH	*-**	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02535g01001.1	sp|Q8VZ19|RL302_ARATH	***-	60S ribosomal protein L30-2	IPR000231 (Ribosomal protein L30e), IPR029064 (50S ribosomal protein L30e-like)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03731g02020.1	gb|AAY85179.1|	***-	fiber expressed protein [Gossypium hirsutum]	IPR008480 (Protein of unknown function DUF761, plant), IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf01486g01008.1			Unknown protein		
Niben101Scf02275g03003.1	sp|Q6ICX4|PTBP3_ARATH	*-**	Polypyrimidine tract-binding protein homolog 3	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01417g05003.1	gb|KEH28697.1|	--*-	lactoylglutathione lyase/glyoxalase I family protein [Medicago truncatula]	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf04028g02002.1	sp|P46290|RL31_NICGU	***-	60S ribosomal protein L31	IPR000054 (Ribosomal protein L31e), IPR023621 (Ribosomal protein L31e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05697g02016.1	sp|Q8DMM5|RL16_THEEB	***-	50S ribosomal protein L16	IPR000114 (Ribosomal protein L16), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf03045g16009.1	AT1G12990.1	****	beta-1,4-N-acetylglucosaminyltransferase family protein LENGTH=392	IPR006813 (Glycosyl transferase, family 17)	GO:0003830 (beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity), GO:0006487 (protein N-linked glycosylation), GO:0016020 (membrane)
Niben101Scf02831g04006.1	AT1G72670.1	***-	IQ-domain 8 LENGTH=414	IPR000048 (IQ motif, EF-hand binding site), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf14156g00012.1			Unknown protein		
Niben101Scf23892g00002.1	sp|A8MQA3|PP330_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01397g00019.1	sp|Q54Q92|LMD2A_DICDI	***-	LMBR1 domain-containing protein 2 homolog A	IPR006876 (LMBR1-like membrane protein)	
Niben101Scf10283g02006.1	sp|Q9C9S4|TPPB_ARATH	****	Trehalose-phosphate phosphatase B	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Ctg16258g00001.1			Unknown protein		
Niben101Scf03188g06007.1	sp|Q6C9M9|EAF3_YARLI	*-*-	Chromatin modification-related protein EAF3	IPR008676 (MRG), IPR026541 (MRG domain)	GO:0005634 (nucleus)
Niben101Scf06305g04001.1	ref|WP_007353692.1|	****	MULTISPECIES: hypothetical protein [Kamptonema] emb|CBN54467.1| conserved membrane hypothetical protein [ [[Oscillatoria] sp. PCC 6506]	IPR001727 (Uncharacterised protein family UPF0016)	GO:0016020 (membrane)
Niben101Scf00165g01007.1	AT2G27260.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=243	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf04875g00021.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2		
Niben101Scf02187g00008.1	sp|A9VM74|MENE_BACWK	*-*-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01947g01008.1	sp|Q8LDC8|ERF92_ARATH	*-**	Ethylene-responsive transcription factor 1B	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06437g03007.1	sp|Q9LNT9|ASK4_ARATH	***-	SKP1-like protein 4	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf13146g00003.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04894g00024.1	AT3G22270.1	***-	Topoisomerase II-associated protein PAT1 LENGTH=782		
Niben101Scf00893g01020.1	sp|O67262|DCDA_AQUAE	***-	Diaminopimelate decarboxylase	IPR009006 (Alanine racemase/group IV decarboxylase, C-terminal), IPR029066 (PLP-binding barrel)	GO:0003824 (catalytic activity)
Niben101Scf00714g06003.1	ref|XP_003596117.1|	--*-	Receptor protein kinase-like protein [Medicago truncatula] gb|KEH19362.1| LRR receptor-like kinase family protein [Medicago truncatula]		
Niben101Scf02325g03007.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf02483g02007.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00246g00001.1	gb|KEH44337.1|	*-*-	inactive poly [ADP-ribose] polymerase RCD1 [Medicago truncatula]	IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR022003 (RST domain of plant C-terminal)	GO:0003950 (NAD+ ADP-ribosyltransferase activity)
Niben101Scf09684g00001.1	ref|XP_002532100.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF30290.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06725g01001.1	sp|Q84W66|NFYB6_ARATH	*-*-	Nuclear transcription factor Y subunit B-6	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf06822g03002.1	AT4G17840.1	****	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;	IPR003675 (CAAX amino terminal protease)	GO:0016020 (membrane)
Niben101Scf04331g03004.1	sp|Q9SV13|SUT31_ARATH	****	Sulfate transporter 3.1	IPR001902 (Sulphate anion transporter)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0009507 (chloroplast), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02294g01001.1	sp|Q8H1G0|GAT28_ARATH	****	GATA transcription factor 28	IPR010399 (Tify), IPR010402 (CCT domain), IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01463g01012.1	gb|KEH39690.1|	*-*-	P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]	IPR026852 (Helicase Sen1-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf09774g02012.1	ref|XP_007043695.1|	*-*-	Homeodomain-like transcriptional regulator, putative isoform 5 [Theobroma cacao] gb|EOX99526.1| Homeodomain-like transcriptional regulator, putative isoform 5 [Theobroma cacao]		
Niben101Scf20124g00015.1	sp|Q9LUS3|PP237_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03068g04001.1	sp|Q9LSL1|BH093_ARATH	*-*-	Transcription factor bHLH93	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00367g05005.1	emb|CDY10086.1|	***-	BnaC08g43650D [Brassica napus]		
Niben101Scf09153g02001.1	sp|Q9LJ45|CCU11_ARATH	****	Cyclin-U1-1	IPR013922 (Cyclin PHO80-like)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0019901 (protein kinase binding)
Niben101Scf00570g01001.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Ctg15605g00001.1			Unknown protein		
Niben101Scf15538g00051.1	sp|Q94JW0|DOHH_ARATH	****	Deoxyhypusine hydroxylase	IPR016024 (Armadillo-type fold), IPR027517 (Deoxyhypusine hydroxylase)	GO:0005488 (binding), GO:0008612 (peptidyl-lysine modification to peptidyl-hypusine), GO:0019135 (deoxyhypusine monooxygenase activity)
Niben101Scf06752g02003.1	sp|Q94CK9|LRP1_ARATH	*-*-	Protein LATERAL ROOT PRIMORDIUM 1	IPR007818 (Protein of unknown function DUF702)	
Niben101Scf00823g01006.1	sp|O82256|COL13_ARATH	****	Zinc finger protein CONSTANS-LIKE 13	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf00234g01029.1	AT3G49670.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1002	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf07687g02005.1	AT2G05620.1	***-	proton gradient regulation 5 LENGTH=133		
Niben101Scf02021g01002.1	sp|Q9LE82|RAGP1_ARATH	***-	RAN GTPase-activating protein 1	IPR003590 (Leucine-rich repeat, ribonuclease inhibitor subtype), IPR025265 (WPP domain)	
Niben101Scf02289g10022.1	ref|XP_007032661.1|	***-	T4P13.26 protein isoform 1 [Theobroma cacao] gb|EOY03587.1| T4P13.26 protein isoform 1 [Theobroma cacao]	IPR025638 (Protein of unknown function DUF4336)	
Niben101Scf06517g00020.1	sp|Q6EP49|MAD27_ORYSJ	*-**	MADS-box transcription factor 27	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf17111g00002.1	AT3G44730.1	*-**	kinesin-like protein 1 LENGTH=1087	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf06356g00008.1	sp|Q9FIX3|PP407_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf12414g04018.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02044g10001.1	sp|Q5E9V4|RRNAD_BOVIN	***-	Protein RRNAD1	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf14459g00004.1	emb|CDX74671.1|	***-	BnaA05g04170D [Brassica napus]		
Niben101Scf00270g00003.1	sp|Q8GY97|CSTR2_ARATH	***-	CMP-sialic acid transporter 2	IPR007271 (Nucleotide-sugar transporter)	GO:0000139 (Golgi membrane), GO:0005351 (sugar:proton symporter activity), GO:0008643 (carbohydrate transport), GO:0016021 (integral component of membrane)
Niben101Scf02111g00010.1	sp|P43180|BEV1G_BETPN	*-*-	Major pollen allergen Bet v 1-G	IPR023393 (START-like domain)	
Niben101Scf13000g03005.1	sp|Q9ZUN5|TET2_ARATH	***-	Tetraspanin-2	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf05222g01002.1	emb|CDX75038.1|	***-	BnaA05g07840D [Brassica napus]		
Niben101Scf04639g11013.1	sp|A2VDX7|EXO5_BOVIN	***-	Exonuclease V	IPR019190 (Exonuclease V)	GO:0045145 (single-stranded DNA 5'-3' exodeoxyribonuclease activity)
Niben101Scf04046g01006.1	sp|A2Z1W9|ACCO1_ORYSI	***-	1-aminocyclopropane-1-carboxylate oxidase 1	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Ctg11076g00001.1	sp|D7MMW4|CSPLJ_ARALL	*-*-	CASP-like protein 4A2	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf00825g00017.1	AT3G57040.1	***-	response regulator 9 LENGTH=234	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf02030g02012.1	ref|XP_007023712.1|	***-	To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao] gb|EOY26334.1| To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao]		
Niben101Scf03171g01002.1	AT3G05860.1	*-*-	MADS-box transcription factor family protein LENGTH=260	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03367g00001.1			Unknown protein		
Niben101Scf00927g02025.1	AT5G13280.1	****	aspartate kinase 1 LENGTH=569	IPR001341 (Aspartate kinase domain)	GO:0004072 (aspartate kinase activity), GO:0008152 (metabolic process), GO:0008652 (cellular amino acid biosynthetic process), GO:0016597 (amino acid binding)
Niben101Scf00369g19010.1	sp|Q43867|PME1_ARATH	*-**	Pectinesterase 1	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf00131g01018.1	AT5G66600.4	***-	Protein of unknown function, DUF547 LENGTH=629	IPR006869 (Domain of unknown function DUF547), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	
Niben101Scf00239g03008.1	sp|Q1AST1|SYM_RUBXD	--**	Methionine--tRNA ligase	IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation)
Niben101Scf07850g08003.1	sp|Q3M690|YCF3_ANAVT	--*-	Photosystem I assembly protein Ycf3	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00725g01012.1	sp|Q9M886|LBD41_ARATH	***-	LOB domain-containing protein 41	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf02530g08015.1	sp|Q6Z2W3|ARFE_ORYSJ	*-**	Auxin response factor 5	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf03295g10003.1	ref|XP_007010870.1|	--*-	Integrase, putative [Theobroma cacao] gb|EOY19680.1| Integrase, putative [Theobroma cacao]		
Niben101Scf02466g01024.1	AT5G02370.1	****	ATP binding microtubule motor family protein LENGTH=628	IPR001752 (Kinesin motor domain), IPR010994 (RuvA domain 2-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf05805g02006.1	AT2G17890.1	*-**	calcium-dependent protein kinase 16 LENGTH=571	IPR004808 (AP endonuclease 1), IPR005135 (Endonuclease/exonuclease/phosphatase), IPR010666 (Zinc finger, GRF-type), IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004518 (nuclease activity), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006281 (DNA repair), GO:0006468 (protein phosphorylation), GO:0008270 (zinc ion binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02786g00015.1			Unknown protein		
Niben101Scf03320g05002.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02869g15009.1	sp|P18479|POLG_ZYMVC	--*-	Genome polyprotein		
Niben101Scf01269g02003.1	AT2G42850.1	***-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01892g02009.1	ref|XP_002522268.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF40126.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02665g09004.1	sp|Q23919|PGM1_DICDI	***-	Phosphoglucomutase-1	IPR005841 (Alpha-D-phosphohexomutase superfamily)	GO:0000287 (magnesium ion binding), GO:0005975 (carbohydrate metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf03325g01018.1	AT3G09090.1	***-	defective in exine formation protein (DEX1) LENGTH=896	IPR027295 (Quinonprotein alcohol dehydrogenase-like domain)	
Niben101Scf01063g04025.1	AT5G16920.1	***-	Fasciclin-like arabinogalactan family protein LENGTH=256	IPR000782 (FAS1 domain)	
Niben101Scf12983g01008.1	sp|Q03066|RPSC_NOSS1	****	RNA polymerase sigma-C factor	IPR014284 (RNA polymerase sigma-70 like domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Scf09834g00008.1	ref|XP_002514143.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF48097.1| conserved hypothetical protein [Ricinus communis]	IPR021025 (Fanconi Anaemia group E protein, C-terminal)	
Niben101Scf15390g01002.1	AT3G10560.1	***-	Cytochrome P450 superfamily protein LENGTH=514	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04294g06037.1	sp|Q8L7R2|KHSE_ARATH	*-*-	Homoserine kinase	IPR020568 (Ribosomal protein S5 domain 2-type fold)	
Niben101Scf04653g07012.1	sp|Q8H5F8|ADPRM_ORYSJ	***-	Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf08721g01028.1	sp|Q2QS13|UGDH5_ORYSJ	****	UDP-glucose 6-dehydrogenase 5	IPR017476 (UDP-glucose/GDP-mannose dehydrogenase)	GO:0003979 (UDP-glucose 6-dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01774g03001.1	gb|KEH35837.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf03592g02004.1	sp|P47996|IMDH1_ARATH	*-**	Inosine-5'-monophosphate dehydrogenase 1	IPR005990 (Inosine-5'-monophosphate dehydrogenase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0003938 (IMP dehydrogenase activity), GO:0006164 (purine nucleotide biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf10306g00003.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01051g10022.1	emb|CDY47432.1|	***-	BnaA02g21500D [Brassica napus]		
Niben101Scf00158g04026.1	sp|Q5TGY1|TMCO4_HUMAN	*-*-	Transmembrane and coiled-coil domain-containing protein 4	IPR007941 (Protein of unknown function DUF726)	
Niben101Scf02944g00001.1	sp|Q2KIG2|WDR5_BOVIN	*-*-	WD repeat-containing protein 5	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf08368g00010.1	sp|Q9ZUA5|VIT1_ARATH	***-	Vacuolar iron transporter 1	IPR008217 (Ccc1 family)	
Niben101Scf00297g00013.1	ref|XP_002511712.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF50381.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11689g00007.1	gb|AAS86304.1|	*-*-	myc-like anthocyanin regulatory protein [Cornus unalaschkensis]	IPR025610 (Transcription factor MYC/MYB N-terminal)	
Niben101Scf08304g04006.1	AT3G06790.1	*-*-	plastid developmental protein DAG, putative LENGTH=244		
Niben101Scf04323g02005.1	AT5G14980.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=327	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02537g02003.1	AT1G61730.1	*-*-	DNA-binding storekeeper protein-related transcriptional regulator LENGTH=376	IPR007592 (Protein of unknown function DUF573)	
Niben101Scf00339g04009.1	sp|Q9STS6|LBD27_ARATH	*-*-	LOB domain-containing protein 27	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf05364g00002.1	sp|O80959|PLP6_ARATH	***-	Patatin-like protein 6	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf01203g00006.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04932g00009.1			Unknown protein		
Niben101Scf12132g00007.1	sp|Q64092|TFE3_MOUSE	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05928g03006.1	sp|P05895|POL_SIVVT	--*-	Gag-Pol polyprotein	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf03267g00041.1	sp|Q6FZC6|RS19_BARQU	-**-	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02996g06007.1	ref|WP_010483453.1|	***-	enoyl-CoA hydratase [Pseudomonas sp. S9]	IPR001753 (Crotonase superfamily), IPR018376 (Enoyl-CoA hydratase/isomerase, conserved site), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf02278g00017.1	sp|Q51876|LEP_PHOLA	*-**	Signal peptidase I	IPR000223 (Peptidase S26A, signal peptidase I), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf09217g00007.1	AT1G30710.1	*-**	FAD-binding Berberine family protein LENGTH=531	IPR012951 (Berberine/berberine-like)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00305g04007.1			Unknown protein	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf32536g00015.1	sp|Q40704|MADS3_ORYSJ	****	MADS-box transcription factor 3	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf02569g01005.1	sp|A4WE49|YGFZ_ENT38	***-	tRNA-modifying protein YgfZ	IPR006222 (Glycine cleavage T-protein-like, N-terminal), IPR013977 (Glycine cleavage T-protein, C-terminal barrel domain), IPR017703 (YgfZ/GcvT conserved site)	
Niben101Scf00398g07006.1	emb|CDX98525.1|	***-	BnaC05g38500D [Brassica napus]	IPR021434 (Protein of unknown function DUF3082)	
Niben101Scf01594g08006.1			Unknown protein		
Niben101Scf09928g01037.1	sp|O18017|BLM_CAEEL	--*-	Bloom syndrome protein homolog		
Niben101Scf06347g01011.1	sp|F4KBW6|NU205_ARATH	*-**	Nuclear pore complex protein NUP205	IPR021827 (Nucleoporin Nup186/Nup192/Nup205)	GO:0005643 (nuclear pore)
Niben101Scf08026g01009.1	emb|CDY31678.1|	***-	BnaA05g08690D [Brassica napus]		
Niben101Scf04236g00006.1	sp|Q9S7R3|LSH10_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	IPR006936 (ALOG domain)	
Niben101Scf12935g00041.1	AT1G20720.1	****	RAD3-like DNA-binding helicase protein LENGTH=1175	IPR006555 (ATP-dependent helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0004003 (ATP-dependent DNA helicase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008026 (ATP-dependent helicase activity), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf18648g00006.1	AT3G13110.1	****	serine acetyltransferase 2;2 LENGTH=391	IPR005881 (Serine O-acetyltransferase)	GO:0005737 (cytoplasm), GO:0006535 (cysteine biosynthetic process from serine), GO:0009001 (serine O-acetyltransferase activity), GO:0016740 (transferase activity)
Niben101Scf03644g03019.1	ref|NP_001053492.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf06942g02013.1	sp|Q9FGK4|B561J_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain)	
Niben101Scf04283g10003.1	AT5G19330.1	***-	ARM repeat protein interacting with ABF2 LENGTH=710	IPR011333 (BTB/POZ fold), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Ctg03533g00002.1	sp|Q3EBF7|SLD2_ARATH	*-*-	Delta(8)-fatty-acid desaturase 2	IPR005804 (Fatty acid desaturase, type 1)	GO:0006629 (lipid metabolic process)
Niben101Scf02864g03013.1	sp|O23240|D2HDH_ARATH	****	D-2-hydroxyglutarate dehydrogenase, mitochondrial	IPR016164 (FAD-linked oxidase-like, C-terminal), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06158g00003.1	AT2G26135.1	****	RING/U-box protein with C6HC-type zinc finger LENGTH=384	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00157g04001.1	sp|B7J4S9|TRPB_ACIF2	****	Tryptophan synthase beta chain	IPR023026 (Tryptophan synthase beta chain/beta chain-like)	GO:0000162 (tryptophan biosynthetic process), GO:0004834 (tryptophan synthase activity), GO:0006568 (tryptophan metabolic process)
Niben101Scf01999g07002.1	sp|A6MFK9|CRVP_DEMVE	***-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf00448g02011.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03239g01001.1	ref|WP_025576370.1|	*-*-	alpha/beta hydrolase [Vibrio parahaemolyticus]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07061g01017.1	emb|CDX85367.1|	***-	BnaC07g26780D [Brassica napus]	IPR022552 (Uncharacterised protein family Ycf55)	
Niben101Scf00813g00014.1	gb|AES88979.2|	***-	E3 ubiquitin ligase BIG brother-like protein [Medicago truncatula]		
Niben101Scf02844g00001.1	gb|KEH27693.1|	***-	survival motor neuron protein [Medicago truncatula]	IPR010304 (Survival motor neuron)	GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006397 (mRNA processing)
Niben101Scf01221g15003.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf15192g01004.1	sp|P94111|STS1_ARATH	****	Strictosidine synthase 1	IPR004141 (Strictosidine synthase)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf03400g01020.1	AT5G04460.1	***-	RING/U-box superfamily protein LENGTH=863	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf15280g00004.1	sp|Q9FY19|PGLR2_JUNAS	*-**	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf12320g03002.1	sp|P40818|UBP8_HUMAN	*-**	Ubiquitin carboxyl-terminal hydrolase 8	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf06345g03004.1	emb|CDY70488.1|	*-*-	BnaUnng03880D, partial [Brassica napus]		
Niben101Scf00679g00002.1	sp|B3EWZ6|MLRP2_ACRMI	--*-	MAM and LDL-receptor class A domain-containing protein 2		
Niben101Scf09127g00010.1	sp|Q5B7W2|MANBB_EMENI	****	Beta-mannosidase B	IPR008979 (Galactose-binding domain-like), IPR013812 (Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain), IPR017853 (Glycoside hydrolase superfamily), IPR023232 (Glycoside hydrolase, family 2, active site), IPR028787 (Mannosylglycoprotein endo-beta-mannosidase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0033947 (mannosylglycoprotein endo-beta-mannosidase activity)
Niben101Scf00163g07005.1	sp|B2JIU7|DER_BURP8	--*-	GTPase Der	IPR005688 (Chloroplast protein import component Toc34), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0006886 (intracellular protein transport), GO:0009707 (chloroplast outer membrane), GO:0015450 (P-P-bond-hydrolysis-driven protein transmembrane transporter activity)
Niben101Scf03966g00003.1	sp|Q0DHL2|LAC12_ORYSJ	*-*-	Laccase-12/13	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01119g00005.1	ref|XP_007021650.1|	*-*-	Actin cyt pan1, putative isoform 1 [Theobroma cacao]		
Niben101Scf03962g01016.1	AT4G02990.1	****	Mitochondrial transcription termination factor family protein LENGTH=541	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04120g02014.1	sp|Q9SE97|FH1_ARATH	*-*-	Formin-like protein 1	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR015425 (Formin, FH2 domain)	
Niben101Scf02302g00003.1	AT3G44510.2	***-	alpha/beta-Hydrolases superfamily protein LENGTH=325	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf16660g01016.1	AT1G18450.1	***-	actin-related protein 4 LENGTH=441	IPR004000 (Actin family)	GO:0000812 (Swr1 complex), GO:0006281 (DNA repair), GO:0006338 (chromatin remodeling), GO:0006355 (regulation of transcription, DNA-templated), GO:0031011 (Ino80 complex), GO:0035267 (NuA4 histone acetyltransferase complex)
Niben101Scf11891g01019.1	sp|Q54VX4|MCFJ_DICDI	***-	Mitochondrial substrate carrier family protein J	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf14886g00003.1	AT1G71720.1	****	Nucleic acid-binding proteins superfamily LENGTH=500	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding)
Niben101Scf30596g00004.1			Unknown protein		
Niben101Scf04252g00008.1	sp|Q9LY87|RGLG2_ARATH	***-	E3 ubiquitin-protein ligase RGLG2	IPR002035 (von Willebrand factor, type A), IPR010734 (Copine), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02237g09015.1	emb|CDY56745.1|	***-	BnaC09g50940D [Brassica napus]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf05437g01010.1			Unknown protein		
Niben101Scf02929g05136.1	ref|XP_010107039.1|	***-	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 [Morus notabilis] gb|EXC13351.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 [Morus notabilis]		
Niben101Scf02156g05008.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf08280g01011.1	sp|Q9C501|PPR70_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04161g00003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf37657g00006.1	emb|CDY01804.1|	-**-	BnaC06g28440D [Brassica napus]		
Niben101Scf01124g27026.1	sp|Q9QYM7|XPF_CRIGR	****	DNA repair endonuclease XPF	IPR010994 (RuvA domain 2-like), IPR011335 (Restriction endonuclease  type II-like)	GO:0003677 (DNA binding), GO:0004518 (nuclease activity), GO:0006259 (DNA metabolic process)
Niben101Scf07049g00002.1	emb|CAH67252.1|	***-	OSIGBa0101C23.4 [Oryza sativa Indica Group]	IPR011038 (Calycin-like), IPR022017 (Domain of unknown function DUF3598)	
Niben101Scf39490g00006.1	sp|Q55G16|RN113_DICDI	*-*-	RING finger protein 113 homolog	IPR000571 (Zinc finger, CCCH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf01980g06004.1	AT1G35830.1	*-*-	VQ motif-containing protein LENGTH=302	IPR008889 (VQ)	
Niben101Scf30947g00007.1	sp|Q6D437|MSBA_PECAS	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf03145g03003.1	sp|Q9C9G4|ENDO2_ARATH	*-**	Endonuclease 2	IPR003154 (S1/P1 nuclease), IPR008947 (Phospholipase C/P1 nuclease domain)	GO:0003676 (nucleic acid binding), GO:0004519 (endonuclease activity), GO:0006308 (DNA catabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04035g00014.1	AT1G01020.1	***-	Arv1-like protein LENGTH=245	IPR007290 (Arv1 protein)	
Niben101Scf02322g03009.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00885g13008.1			Unknown protein		
Niben101Scf03915g00001.1	sp|A0A352|PSBE_COFAR	*-*-	Cytochrome b559 subunit alpha	IPR013082 (Photosystem II cytochrome b559, alpha subunit, lumenal region)	GO:0009523 (photosystem II), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf02947g04011.1			Unknown protein		
Niben101Scf03444g02004.1	sp|Q0WPX7|BAG2_ARATH	*-*-	BAG family molecular chaperone regulator 2	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf01866g01004.1	sp|Q9T0D6|PP306_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00272g11020.1	AT2G46420.1	***-	Plant protein 1589 of unknown function LENGTH=363	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf07488g01003.1	sp|Q3AKY6|NDHL_SYNSC	*-**	NAD(P)H-quinone oxidoreductase subunit L	IPR019654 (NAD(P)H-quinone oxidoreductase subunit L)	GO:0016655 (oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf02798g01055.1			Unknown protein		
Niben101Scf25602g00003.1	AT2G41090.1	****	Calcium-binding EF-hand family protein LENGTH=191	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01494g04012.1	sp|Q9HSF6|RNH_HALSA	*-**	Ribonuclease HI	IPR009027 (Ribosomal protein L9/RNase H1, N-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf10305g01001.1	ref|XP_002871133.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH47392.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf01604g01016.1	AT5G04160.1	***-	Nucleotide-sugar transporter family protein LENGTH=309	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf01078g00006.1	AT3G48200.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 210 Blast hits to 148 proteins in 42 species: Archae - 0; Bacteria - 118; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). LENGTH=1088		
Niben101Scf05151g02005.1	AT2G44745.1	*-**	WRKY family transcription factor LENGTH=218	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01084g05004.1	sp|P23137|GRP1_TOBAC	*-*-	Glycine-rich protein		
Niben101Scf03088g00003.1	AT5G59290.2	***-	UDP-glucuronic acid decarboxylase 3 LENGTH=357	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf02289g04006.1	sp|P27496|CB25_TOBAC	***-	Chlorophyll a-b binding protein 50, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf00059g04019.1	AT3G53580.1	****	diaminopimelate epimerase family protein LENGTH=362	IPR001653 (Diaminopimelate epimerase, DapF)	GO:0005737 (cytoplasm), GO:0008837 (diaminopimelate epimerase activity), GO:0009089 (lysine biosynthetic process via diaminopimelate)
Niben101Scf10015g08009.1	AT1G75270.1	***-	dehydroascorbate reductase 2 LENGTH=213	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf03634g09003.1	gb|ABD28710.1|	--*-	Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]		
Niben101Scf00425g02001.1	sp|Q8XJD8|EX7L_CLOPE	--*-	Exodeoxyribonuclease 7 large subunit	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf00679g02011.1	ref|NP_001054228.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf00584g03014.1	AT3G23530.1	***-	Cyclopropane-fatty-acyl-phospholipid synthase LENGTH=867	IPR003333 (Mycolic acid cyclopropane synthase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008610 (lipid biosynthetic process)
Niben101Scf03445g03003.1	AT4G10790.1	*-*-	UBX domain-containing protein LENGTH=480	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf03398g07007.1	sp|Q3UIW5|RNF10_MOUSE	--*-	RING finger protein 10	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04024g00003.1	AT2G01150.1	***-	RING-H2 finger protein 2B LENGTH=147	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf13448g00015.1	sp|Q8L7B2|SCP20_ARATH	****	Serine carboxypeptidase-like 20	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04096g11021.1	gb|KEH17374.1|	****	calmodulin-binding protein [Medicago truncatula]	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf03851g02017.1	gb|ABB69784.1|	****	beta-glucan-binding protein 4 [Medicago truncatula]	IPR005200 (Endo-1,3(4)-beta-glucanase)	GO:0016998 (cell wall macromolecule catabolic process), GO:0052861 (glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group), GO:0052862 (glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group)
Niben101Scf03860g01010.1	sp|Q67BJ4|A4GAT_MOUSE	***-	Lactosylceramide 4-alpha-galactosyltransferase	IPR007577 (Glycosyltransferase, DXD sugar-binding motif), IPR007652 (Alpha 1,4-glycosyltransferase domain), IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf01538g05007.1	dbj|BAL45201.1|	--*-	cytochrome P450 monooxygenase [Medicago truncatula]	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08918g02009.1	sp|Q55087|CHLP_SYNY3	****	Geranylgeranyl diphosphate reductase	IPR003042 (Aromatic-ring hydroxylase-like), IPR011777 (Geranylgeranyl reductase family), IPR016040 (NAD(P)-binding domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0015979 (photosynthesis), GO:0015995 (chlorophyll biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0016628 (oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor), GO:0045550 (geranylgeranyl reductase activity), GO:0051188 (cofactor biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf07370g00002.1	sp|Q9M1K2|PI5K4_ARATH	****	Phosphatidylinositol 4-phosphate 5-kinase 4	IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf05118g01011.1	gb|KEH26552.1|	*-*-	gibberellin receptor GID1, putative [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf04918g05002.1	gb|AES91657.2|	****	RING-H2 zinc finger protein [Medicago truncatula]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06203g00011.1	AT4G13850.1	*-**	glycine-rich RNA-binding protein 2 LENGTH=158	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01998g00010.1	sp|Q1DQ20|IF4A_COCIM	*-*-	ATP-dependent RNA helicase eIF4A	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf05247g01011.1	sp|O95208|EPN2_HUMAN	*-*-	Epsin-2	IPR008942 (ENTH/VHS)	
Niben101Scf07579g04003.1	sp|Q863B3|SND1_BOVIN	***-	Staphylococcal nuclease domain-containing protein 1	IPR016685 (RNA-induced silencing complex, nuclease component Tudor-SN)	GO:0016442 (RISC complex), GO:0031047 (gene silencing by RNA)
Niben101Scf04015g01019.1	ref|XP_003615104.1|	*-*-	Receptor protein kinase-like protein [Medicago truncatula]		
Niben101Scf02151g00001.1	sp|Q8R3N1|NOP14_MOUSE	*-*-	Nucleolar protein 14	IPR005343 (Nucleolar complex protein 2), IPR007276 (Nucleolar protein 14)	GO:0032040 (small-subunit processome)
Niben101Scf00185g04001.1	ref|WP_017313017.1|	*-*-	glutaredoxin [Fischerella sp. PCC 9339]	IPR008554 (Glutaredoxin-like), IPR012336 (Thioredoxin-like fold)	
Niben101Ctg15355g00001.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03294g00007.1	AT3G59410.2	*-**	protein kinase family protein LENGTH=1265	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05487g00008.1	sp|B4S2C4|RL33_ALTMD	-**-	50S ribosomal protein L33	IPR001705 (Ribosomal protein L33), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03576g00007.1	AT1G42960.1	*-*-	expressed protein localized to the inner membrane of the chloroplast. LENGTH=168		
Niben101Scf01500g06008.1	AT4G28706.4	****	pfkB-like carbohydrate kinase family protein LENGTH=440	IPR002139 (Ribokinase), IPR029056 (Ribokinase-like)	GO:0004747 (ribokinase activity), GO:0006014 (D-ribose metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf02285g01023.1	AT4G25660.1	***-	PPPDE putative thiol peptidase family protein LENGTH=255	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf14098g00005.1			Unknown protein		
Niben101Scf00182g04001.1	sp|Q3M8C8|SYK_ANAVT	****	Lysine--tRNA ligase	IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004824 (lysine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006430 (lysyl-tRNA aminoacylation)
Niben101Scf04132g01013.1	ref|XP_002522268.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF40126.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06252g00004.1	ref|XP_007016014.1|	****	Mitochondria isoform 2 [Theobroma cacao] gb|EOY33633.1| Mitochondria isoform 2 [Theobroma cacao]	IPR007849 (ATPase assembly factor ATP10)	GO:0032592 (integral component of mitochondrial membrane)
Niben101Scf01855g02020.1	gb|AAY53482.1|	*-*-	resistance protein R1 [Solanum demissum]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00519g00013.1	sp|Q9M5Q1|FUT1_PEA	****	Galactoside 2-alpha-L-fucosyltransferase	IPR004938 (Xyloglucan fucosyltransferase)	GO:0008107 (galactoside 2-alpha-L-fucosyltransferase activity), GO:0016020 (membrane), GO:0042546 (cell wall biogenesis)
Niben101Scf19248g00002.1	gb|EZA46847.1|	--*-	Ubiquilin-1 [Cerapachys biroi]	IPR029071 (Ubiquitin-related domain)	
Niben101Scf00451g03009.1	sp|O43719|HTSF1_HUMAN	*-*-	HIV Tat-specific factor 1	IPR003169 (GYF), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR025640 (Domain of unknown function DUF4339)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf03840g02006.1	sp|O84100|RS1_CHLTR	*-*-	30S ribosomal protein S1	IPR000110 (Ribosomal protein S1)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07678g07013.1	sp|Q55C58|VPS16_DICDI	***-	Vacuolar protein sorting-associated protein 16 homolog	IPR011042 (Six-bladed beta-propeller, TolB-like), IPR016534 (Vacuolar protein sorting-associated protein 16)	GO:0005737 (cytoplasm), GO:0006886 (intracellular protein transport)
Niben101Scf03638g03003.1	emb|CDY01291.1|	***-	BnaC05g24410D [Brassica napus]		
Niben101Scf05077g01013.1	sp|B7M3W8|AES_ECO8A	*-*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf02354g05009.1	sp|Q6R8G3|PHO17_ARATH	*-*-	Phosphate transporter PHO1 homolog 7	IPR004331 (SPX, N-terminal), IPR004342 (EXS, C-terminal)	GO:0016021 (integral component of membrane)
Niben101Scf03964g01004.1	ref|XP_007033409.1|	***-	Sarcolemmal membrane-associated protein, putative isoform 2 [Theobroma cacao] gb|EOY04335.1| Sarcolemmal membrane-associated protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf05653g00004.1	sp|Q8VYR3|TBL2_ARATH	***-	Protein trichome birefringence-like 2	IPR006130 (Aspartate/ornithine carbamoyltransferase), IPR026057 (PC-Esterase)	GO:0006520 (cellular amino acid metabolic process), GO:0016597 (amino acid binding), GO:0016743 (carboxyl- or carbamoyltransferase activity)
Niben101Scf11588g00009.1	sp|Q42059|GUN6_ARATH	*-*-	Endoglucanase 6	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00154g00002.1	AT3G27820.1	*-*-	monodehydroascorbate reductase 4 LENGTH=488		
Niben101Scf14973g02001.1	sp|Q9LUA9|COL10_ARATH	*-**	Zinc finger protein CONSTANS-LIKE 10	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf08728g01001.1	sp|Q9ZUI6|AP1G2_ARATH	****	AP-1 complex subunit gamma-2	IPR013041 (Coatomer/clathrin adaptor appendage, Ig-like subdomain), IPR016024 (Armadillo-type fold), IPR017107 (Adaptor protein complex AP-1, gamma subunit)	GO:0005488 (binding), GO:0005794 (Golgi apparatus), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030131 (clathrin adaptor complex)
Niben101Scf00856g01006.1	ref|XP_002523935.1|	****	hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gb|EEF38422.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03858g00028.1	sp|Q86MW9|SINA_SCHMA	****	E3 ubiquitin-protein ligase sina	IPR004162 (E3 ubiquitin-protein ligase SINA like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf11991g01002.1	AT4G30950.1	***-	fatty acid desaturase 6 LENGTH=448	IPR005804 (Fatty acid desaturase, type 1)	GO:0006629 (lipid metabolic process)
Niben101Scf06807g02005.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00264g03023.1	sp|P20866|CB2_PHYPA	*-*-	Chlorophyll a-b binding protein, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf01219g06020.1	sp|Q21988|AMX1_CAEEL	--*-	Amine oxidase family member 1		
Niben101Scf02062g01002.1	sp|Q5VYK3|ECM29_HUMAN	***-	Proteasome-associated protein ECM29 homolog	IPR016024 (Armadillo-type fold), IPR026827 (Proteasome component ECM29/Translational activator GCN1)	GO:0005488 (binding)
Niben101Scf02922g00003.1	sp|Q0VCG0|LYRM4_BOVIN	***-	LYR motif-containing protein 4	IPR008011 (Complex 1 LYR protein)	
Niben101Scf02746g05003.1			Unknown protein		
Niben101Scf01266g01001.1	emb|CCA38845.1|	--*-	mRNA transport regulator MTR10 [Komagataella pastoris CBS 7435]		
Niben101Scf05962g00001.1	sp|Q6Z6W2|MAD57_ORYSJ	--*-	MADS-box transcription factor 57	IPR002100 (Transcription factor, MADS-box), IPR008566 (Herpesvirus UL96/Rhadinovirus)	
Niben101Scf03934g00015.1	AT1G04020.1	***-	breast cancer associated RING 1 LENGTH=714	IPR011364 (Breast cancer type 1 susceptibility protein (BRCA1)), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003677 (DNA binding), GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf08898g00001.1	sp|Q9LVC3|PUM12_ARATH	***-	Pumilio homolog 12	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf08729g02017.1	gb|KEH31889.1|	*-*-	aminoacyl-tRNA synthetase [Medicago truncatula]		
Niben101Scf07639g06002.1	sp|Q0VQN0|ACP_ALCBS	*-*-	Acyl carrier protein	IPR003231 (Acyl carrier protein (ACP)), IPR009081 (Acyl carrier protein-like)	GO:0006633 (fatty acid biosynthetic process)
Niben101Scf02414g03010.1	sp|P53800|FDFT_NICBE	***-	Squalene synthase	IPR002060 (Squalene/phytoene synthase)	GO:0009058 (biosynthetic process), GO:0016740 (transferase activity)
Niben101Scf00391g00009.1	ref|XP_002869579.1|	*-**	rab GTPase activator [Arabidopsis lyrata subsp. lyrata] gb|EFH45838.1| rab GTPase activator [Arabidopsis lyrata subsp. lyrata]	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf00307g04015.1	sp|Q39265|ZFP6_ARATH	***-	Zinc finger protein 6	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf04219g00014.1	AT2G24400.1	***-	SAUR-like auxin-responsive protein family LENGTH=178	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03290g00002.1			Unknown protein		
Niben101Scf08179g01017.1	sp|B3WE80|DER_LACCB	--*-	GTPase Der	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf12135g00013.1	sp|O48781|SPX2_ARATH	***-	SPX domain-containing protein 2	IPR004331 (SPX, N-terminal)	
Niben101Scf00167g00004.1	AT4G14920.1	****	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein LENGTH=1138	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008080 (N-acetyltransferase activity), GO:0008270 (zinc ion binding)
Niben101Scf18667g02002.1	sp|Q42430|ZFP1_WHEAT	--*-	Zinc finger protein 1	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Ctg15342g00002.1	sp|Q8RY67|WAKLO_ARATH	*-*-	Wall-associated receptor kinase-like 14	IPR023413 (Green fluorescent protein-like)	
Niben101Scf05057g01012.1	sp|Q54BM2|PAP1A_DICDI	*-**	Polyadenylate-binding protein 1-A	IPR002343 (Paraneoplastic encephalomyelitis antigen), IPR006515 (Polyadenylate binding protein, human types 1, 2, 3, 4), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf09696g00031.1	sp|P51409|RM05_SOLTU	*-*-	60S ribosomal protein L5, mitochondrial	IPR022803 (Ribosomal protein L5 domain)	
Niben101Scf02939g02005.1	sp|Q6NM73|CRR3_ARATH	***-	Cysteine-rich repeat secretory protein 3	IPR002902 (Gnk2-homologous domain)	
Niben101Scf03549g00004.1	AT5G67385.1	***-	Phototropic-responsive NPH3 family protein LENGTH=604	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf01022g03042.1	sp|O93988|ACL1_SORMK	****	ATP-citrate synthase subunit 1	IPR002020 (Citrate synthase-like), IPR016102 (Succinyl-CoA synthetase-like)	GO:0003824 (catalytic activity), GO:0003878 (ATP citrate synthase activity), GO:0004775 (succinate-CoA ligase (ADP-forming) activity), GO:0008152 (metabolic process), GO:0044262 (cellular carbohydrate metabolic process), GO:0046912 (transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer)
Niben101Scf31270g00002.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf00327g00004.1	sp|Q9Y5Q8|TF3C5_HUMAN	***-	General transcription factor 3C polypeptide 5	IPR019136 (Transcription factor IIIC, subunit 5)	
Niben101Scf08869g01020.1			Unknown protein		
Niben101Scf01701g12017.1	sp|Q1PFD1|BLH11_ARATH	***-	BEL1-like homeodomain protein 11	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04315g00004.1	sp|Q9SSF8|CDPKU_ARATH	--*-	Calcium-dependent protein kinase 30		
Niben101Scf14233g00008.1	sp|Q9LW48|ERF5_NICSY	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04610g01031.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01326g08017.1	sp|Q9GKX6|GALM_PIG	*-*-	Aldose 1-epimerase	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf00582g01034.1	emb|CDY07572.1|	*-*-	BnaC06g14920D [Brassica napus]		
Niben101Scf03856g04010.1	sp|P36408|GBB_DICDI	*-**	Guanine nucleotide-binding protein subunit beta	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02001g02004.1			Unknown protein		
Niben101Scf00461g03003.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08495g00011.1			Unknown protein		
Niben101Scf01072g02008.1	ref|XP_002524585.1|	--**	nucleic acid binding protein, putative [Ricinus communis] gb|EEF37793.1| nucleic acid binding protein, putative [Ricinus communis]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf01025g07021.1	sp|Q62848|ARFG1_RAT	*-**	ADP-ribosylation factor GTPase-activating protein 1	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf03455g03001.1	emb|CDY10202.1|	*-*-	BnaC05g04450D [Brassica napus]		
Niben101Scf00175g02021.1	sp|Q9LSY5|U71B7_ARATH	*-*-	UDP-glycosyltransferase 71B7		
Niben101Scf02535g04013.1	gb|ABK78687.1|	****	GTP binding protein [Brassica rapa]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf03502g01003.1	ref|XP_002519145.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF43356.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf05824g00001.1	gb|KAK46980.1|	****	GCN5 family acetyltransferase [Burkholderia sp. MP-1]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf01258g02009.1	sp|Q9SID1|BBX25_ARATH	****	B-box zinc finger protein 25	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf03438g02007.1	AT5G65550.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=466	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00223g03019.1	sp|P81391|MYB05_ANTMA	*-*-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05109g03001.1	gb|AFU75208.1|	*-*-	nematode resistance-like protein, partial [Solanum tuberosum]	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00653g02012.1	AT3G03340.1	***-	LUC7 related protein LENGTH=402	IPR004882 (Luc7-related)	GO:0003729 (mRNA binding), GO:0005685 (U1 snRNP), GO:0006376 (mRNA splice site selection)
Niben101Scf08921g02018.1	sp|Q7XR52|CYSP1_ORYSJ	*-**	Cysteine protease 1	IPR013128 (Peptidase C1A)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf03009g02004.1	sp|Q92466|DDB2_HUMAN	--**	DNA damage-binding protein 2	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01521g00004.1	AT1G26360.1	***-	methyl esterase 13 LENGTH=444	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01085g04007.1	AT2G30490.1	***-	cinnamate-4-hydroxylase LENGTH=505	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01692g01003.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07370g00001.1	emb|CDY35740.1|	--*-	BnaC03g58610D [Brassica napus]		
Niben101Scf11497g02007.1	sp|Q5JIR1|VATD_THEKO	****	V-type ATP synthase subunit D	IPR002699 (ATPase, V1 complex, subunit D)	GO:0042626 (ATPase activity, coupled to transmembrane movement of substances)
Niben101Scf00885g18011.1			Unknown protein		
Niben101Scf03256g02004.1	AT2G45260.1	***-	Plant protein of unknown function (DUF641) LENGTH=425		
Niben101Scf00107g02001.1	AT4G34150.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=247	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf06205g02006.1	sp|P0C6F4|R1A_BRV1	--*-	Replicase polyprotein 1a		
Niben101Scf13448g00016.1	sp|Q9C9G6|U195A_ARATH	***-	MIP18 family protein	IPR002744 (Domain of unknown function DUF59)	
Niben101Scf08157g02042.1	AT1G11360.1	***-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=242	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf08446g03018.1	ref|NP_001043856.1|	***-	product [Oryza sativa Japonica Group]	IPR021319 (Protein of unknown function DUF2921)	
Niben101Scf00492g01003.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01385g11005.1			Unknown protein		
Niben101Scf04206g02010.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05643g05002.1	ref|XP_002510159.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF52346.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00059g00007.1	AT3G09520.1	****	exocyst subunit exo70 family protein H4 LENGTH=628	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf09325g04008.1			Unknown protein		
Niben101Scf03732g01001.1	sp|B8CW78|PNP_HALOH	*-*-	Polyribonucleotide nucleotidyltransferase	IPR008847 (Suppressor of forked), IPR011990 (Tetratricopeptide-like helical domain), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006396 (RNA processing), GO:0006397 (mRNA processing)
Niben101Scf09234g03023.1	AT5G10270.1	*-**	cyclin-dependent kinase C;1 LENGTH=505	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05122g00005.1	gb|ACZ55216.1|	****	S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase [Nicotiana suaveolens]	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02826g00023.1	sp|Q84K47|AB2A_ARATH	****	ABC transporter A family member 2	IPR026082 (ABC transporter A, ABCA)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf05776g00008.1	sp|Q8N6R0|MET13_HUMAN	****	Methyltransferase-like protein 13	IPR001045 (Spermidine/spermine synthases family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf04827g00003.1			Unknown protein		
Niben101Scf04608g05033.1	ref|XP_007010468.1|	--*-	Nudix hydrolase [Theobroma cacao] gb|EOY19278.1| Nudix hydrolase [Theobroma cacao]		
Niben101Scf01269g15002.1	sp|Q3UQU0|BRD9_MOUSE	*-*-	Bromodomain-containing protein 9	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf00406g00002.1	sp|Q9ZPY6|ARFK_ARATH	*-*-	Auxin response factor 11		
Niben101Scf03788g00002.1	sp|Q9LMP1|WAK2_ARATH	*-*-	Wall-associated receptor kinase 2	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf05173g00017.1	gb|AAF14244.1|AF110228_1	*-*-	nuclear RNA binding protein A [Spinacia oleracea]	IPR006861 (Hyaluronan/mRNA-binding protein), IPR019084 (Stm1, N-terminal)	
Niben101Scf33567g00020.1	AT3G30390.1	***-	Transmembrane amino acid transporter family protein LENGTH=460	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf01521g16003.1			Unknown protein		
Niben101Scf08584g00001.1	sp|O80822|PER25_ARATH	*-**	Peroxidase 25	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg14855g00004.1	ref|XP_002532338.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF30040.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06288g00003.1	sp|Q9EXP1|SUFE_DICD3	*-*-	Cysteine desulfuration protein SufE	IPR002634 (BolA protein), IPR003808 (Fe-S metabolism associated domain, SufE-like)	
Niben101Scf01433g02008.1	AT3G51070.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=895	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf05750g01011.1	AT1G67640.1	***-	Transmembrane amino acid transporter family protein LENGTH=441	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf04995g00014.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05057g04004.1	sp|Q54K69|RAB7B_DICDI	***-	Ras-related protein Rab-7B	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf02798g00041.1	sp|Q5PAR3|NUOD_ANAMM	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00271g05016.1	sp|Q9LMK2|LSH6_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	IPR006936 (ALOG domain)	
Niben101Scf11917g00007.1	sp|Q9LR47|IP5P3_ARATH	*-*-	Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf09101g04022.1	AT2G30300.1	***-	Major facilitator superfamily protein LENGTH=500	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf02668g01010.1	sp|Q55087|CHLP_SYNY3	****	Geranylgeranyl diphosphate reductase	IPR003042 (Aromatic-ring hydroxylase-like), IPR011777 (Geranylgeranyl reductase family), IPR016040 (NAD(P)-binding domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0015979 (photosynthesis), GO:0015995 (chlorophyll biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0016628 (oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor), GO:0045550 (geranylgeranyl reductase activity), GO:0051188 (cofactor biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf01574g03001.1	sp|Q43383|ACCH5_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 5	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf10855g01002.1	sp|Q94EJ2|HDA8_ARATH	***-	Histone deacetylase 8	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	
Niben101Scf00268g04009.1	AT5G47650.1	****	nudix hydrolase homolog 2 LENGTH=278	IPR003293 (Nudix hydrolase 6-like)	GO:0016787 (hydrolase activity)
Niben101Scf04254g01001.1	sp|Q8GYX0|MOB1_ARATH	***-	MOB kinase activator-like 1	IPR005301 (Mob1/phocein)	
Niben101Scf00539g02006.1	sp|Q43872|PER64_ARATH	*-**	Peroxidase 64	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01789g04011.1	ref|WP_026733513.1|	***-	metallophosphoesterase [Fischerella sp. PCC 9605]	IPR029052 (Metallo-dependent phosphatase-like)	
Niben101Scf10086g01005.1	ref|WP_017310080.1|	--*-	fibrillin [Fischerella sp. PCC 9339]	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf02705g01019.1	AT4G16970.1	*-**	Protein kinase superfamily protein LENGTH=889	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg14729g00001.1	AT5G07330.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=165		
Niben101Scf07664g01014.1			Unknown protein		
Niben101Scf08338g01015.1	AT1G11700.1	***-	Protein of unknown function, DUF584 LENGTH=201	IPR007608 (Senescence regulator S40)	
Niben101Scf00343g07001.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00453g01014.1	sp|Q93MV5|ATKB_MYXXA	*-*-	Potassium-transporting ATPase B chain	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0016021 (integral component of membrane)
Niben101Scf05467g04006.1	sp|Q6DR10|TBL43_ARATH	***-	Protein trichome birefringence-like 43	IPR026057 (PC-Esterase)	
Niben101Scf05439g02047.1	ref|YP_002608396.1|	*-*-	orf86 [Vitis vinifera] emb|CAQ77655.1| orf86 [Vitis vinifera] gb|ACS15212.1| ORF86 [Vitis vinifera]		
Niben101Scf05385g04008.1	AT1G47670.1	***-	Transmembrane amino acid transporter family protein LENGTH=519	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf06224g00005.1			Unknown protein		
Niben101Scf11355g01020.1	sp|Q9LFS2|GEX3_ARATH	***-	Protein GAMETE EXPRESSED 3	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily)	
Niben101Scf00741g01011.1	AT3G06630.1	*-**	protein kinase family protein LENGTH=671	IPR000014 (PAS domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004871 (signal transducer activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06616g03009.1	sp|P81391|MYB05_ANTMA	*-*-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06437g03004.1	ref|XP_002529597.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF32789.1| conserved hypothetical protein [Ricinus communis]	IPR019320 (Uncharacterised protein family UPF0402)	
Niben101Scf02325g03008.1	gb|ABD65085.1|	--*-	Ulp1 protease family protein [Brassica oleracea]		
Niben101Scf02869g17006.1	AT3G55440.1	****	triosephosphate isomerase LENGTH=254	IPR000652 (Triosephosphate isomerase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004807 (triose-phosphate isomerase activity), GO:0006096 (glycolytic process), GO:0008152 (metabolic process)
Niben101Scf01102g01004.1	ref|WP_029912107.1|	****	NADPH-dependent FMN reductase [Pelobacter seleniigenes]	IPR029039 (Flavoprotein-like)	GO:0016491 (oxidoreductase activity)
Niben101Scf00893g01023.1	AT2G21610.1	****	pectinesterase 11 LENGTH=352	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02397g00007.1	sp|Q9FE67|ERF80_ARATH	--**	Ethylene-responsive transcription factor 9	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01163g04025.1	gb|ABF98470.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf06207g02001.1			Unknown protein		
Niben101Scf04339g06013.1	AT1G50740.1	***-	Transmembrane proteins 14C LENGTH=119	IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane)
Niben101Scf03363g01008.1			Unknown protein	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06155g00004.1	sp|Q9SF32|IQD1_ARATH	***-	Protein IQ-DOMAIN 1	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf05977g01005.1	sp|P23279|1A11_CUCPE	***-	1-aminocyclopropane-1-carboxylate synthase 1	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf04015g02021.1	AT3G26210.1	*-*-	cytochrome P450, family 71, subfamily B, polypeptide 23 LENGTH=501	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04727g00002.1	sp|Q94B74|NUDT2_ARATH	****	Nudix hydrolase 2	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf09951g00010.1	AT2G46690.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=121	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf14837g01005.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02370g00010.1	ref|NP_973643.1|	*-**	Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana] gb|AEC09764.1| Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]	IPR018848 (WIYLD domain)	GO:0018024 (histone-lysine N-methyltransferase activity)
Niben101Scf13779g00001.1	sp|Q9P289|STK26_HUMAN	*-**	Serine/threonine-protein kinase 26	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00466g04031.1	AT2G17820.1	*-**	histidine kinase 1 LENGTH=1207	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00647g01014.1	sp|D4GYV5|SUFS_HALVD	*-*-	Cysteine desulfurase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Ctg10282g00001.1	sp|Q8LB33|FB330_ARATH	***-	F-box protein	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf01814g01010.1	AT3G56760.1	****	Protein kinase superfamily protein LENGTH=577	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07223g00003.1	AT4G34980.1	****	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02937g05004.1	sp|Q94C27|FB84_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02321g00020.1	sp|O58721|SYM_PYRHO	*-**	Methionine--tRNA ligase	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR015413 (Methionyl/Leucyl tRNA synthetase)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004825 (methionine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006431 (methionyl-tRNA aminoacylation)
Niben101Scf09112g03001.1			Unknown protein		
Niben101Scf00878g02004.1			Unknown protein		
Niben101Scf06113g00017.1	AT5G54680.1	***-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=234	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00249g00006.1	gb|KEH35013.1|	*-*-	rRNA processing/ribosome biogenesis protein [Medicago truncatula]		
Niben101Scf07239g00005.1	sp|B8HSQ9|SURE_CYAP4	****	5'-nucleotidase SurE	IPR002828 (Survival protein SurE-like phosphatase/nucleotidase), IPR030048 (Survival protein SurE)	GO:0008252 (nucleotidase activity), GO:0016787 (hydrolase activity)
Niben101Scf05310g04018.1			Unknown protein		
Niben101Scf02468g05013.1	sp|Q84UU9|TPS06_ARATH	*-**	Terpenoid synthase 6	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf07019g00004.1	sp|Q1QSX1|DNAJ_CHRSD	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf06825g03007.1	AT5G44370.1	*-*-	phosphate transporter 4;6 LENGTH=432	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf10877g00005.1	sp|Q32P84|TM258_BOVIN	***-	Transmembrane protein 258	IPR007915 (Uncharacterised protein family UPF0197)	
Niben101Scf04995g13001.1	sp|Q8ZSB0|MNTH_NOSS1	****	Divalent metal cation transporter MntH	IPR001046 (NRAMP family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf09178g01016.1	sp|B1I6T1|RS6_DESAP	-**-	30S ribosomal protein S6	IPR000529 (Ribosomal protein S6), IPR014717 (Translation elongation factor EF1B/ribosomal protein S6)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf01006g07009.1	sp|Q55EJ3|NAT10_DICDI	*-**	N-acetyltransferase 10 homolog	IPR000182 (GNAT domain), IPR007807 (Helicase domain), IPR027992 (Possible tRNA binding domain)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf21586g00001.1	sp|Q8W206|CSN6A_ARATH	***-	COP9 signalosome complex subunit 6a	IPR024969 (Rpn11/EIF3F C-terminal domain)	
Niben101Scf08032g00003.1	sp|Q56WF8|SCP48_ARATH	*-**	Serine carboxypeptidase-like 48	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05855g01029.1	sp|P10973|NLTPA_RICCO	****	Non-specific lipid-transfer protein A	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf00370g02018.1	AT1G03220.1	***-	Eukaryotic aspartyl protease family protein LENGTH=433	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf11688g01011.1			Unknown protein		
Niben101Scf06822g03001.1	sp|B8CH76|SYGB_SHEPW	--*-	Glycine--tRNA ligase beta subunit		
Niben101Scf00690g07017.1			Unknown protein		
Niben101Scf07278g01008.1			Unknown protein		
Niben101Scf01727g07006.1	sp|Q9Z4H7|HTRA_LACHE	****	Serine protease Do-like HtrA	IPR001940 (Peptidase S1C), IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity), GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf03479g04003.1	sp|O14270|FHL1_SCHPO	*-*-	Fork head transcription factor 1	IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf05528g00004.1	AT1G55690.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=625	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf04703g09002.1	sp|Q9LQL2|PTR14_ARATH	***-	Protein NRT1/ PTR FAMILY 7.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02437g06007.1	sp|O81211|RBOHE_ARATH	*-**	Respiratory burst oxidase homolog protein E	IPR000778 (Cytochrome b245, heavy chain), IPR011992 (EF-hand domain pair), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0004601 (peroxidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0050664 (oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf02309g03029.1	gb|AES73362.2|	*-*-	carboxyl-terminal peptidase [Medicago truncatula]	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf16119g00002.1	sp|A8MQA3|PP330_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04981g00003.1	sp|Q5WW20|PUR7_LEGPL	*-*-	Phosphoribosylaminoimidazole-succinocarboxamide synthase	IPR028923 (SAICAR synthetase/ADE2, N-terminal)	
Niben101Scf13227g00027.1	sp|B1IXA5|FADJ_ECOLC	****	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain), IPR018376 (Enoyl-CoA hydratase/isomerase, conserved site), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0003857 (3-hydroxyacyl-CoA dehydrogenase activity), GO:0006631 (fatty acid metabolic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06700g01006.1	AT1G55790.1	*-*-	Domain of unknown function (DUF2431) LENGTH=515	IPR019446 (Domain of unknown function DUF2431)	
Niben101Scf03370g05005.1	ref|XP_003624917.1|	***-	Two-component response regulator ARR1 [Medicago truncatula] gb|ABN09175.1| Homeodomain-related [Medicago truncatula] gb|AES81135.1| MYB-like transcription factor family protein [Medicago truncatula]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07023g03001.1	sp|Q9M612|NACA_PINTA	***-	Nascent polypeptide-associated complex subunit alpha-like protein	IPR016641 (Nascent polypeptide-associated complex subunit alpha)	GO:0005515 (protein binding)
Niben101Scf04679g00001.1	AT2G20990.3	***-	synaptotagmin A LENGTH=579	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01807g01013.1	sp|A6H611|MIPEP_MOUSE	--**	Mitochondrial intermediate peptidase	IPR001567 (Peptidase M3A/M3B), IPR024077 (Neurolysin/Thimet oligopeptidase, domain 2)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02606g03020.1	AT1G79790.1	****	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=245	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf03930g04006.1	sp|Q9ZUA9|Y2181_ARATH	*-*-	PHD finger protein	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02085g26022.1	sp|Q6Z9F4|CIPK6_ORYSJ	****	CBL-interacting protein kinase 6	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02093g04006.1	sp|Q56XR7|STR4A_ARATH	***-	Rhodanese-like domain-containing protein 4A, chloroplastic	IPR001763 (Rhodanese-like domain)	
Niben101Scf02714g03005.1	ref|XP_002512598.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF50050.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01993g03013.1	sp|Q93YU2|RUS6_ARATH	***-	Protein root UVB sensitive 6	IPR006968 (Root UVB sensitive family)	
Niben101Scf05414g01003.1	ref|NP_001276289.1|	--*-	coiled-coil domain-containing protein 94 homolog [Glycine max] gb|ACU21483.1| unknown [Glycine max]		
Niben101Scf03214g01013.1	sp|P46301|RS25_SOLLC	***-	40S ribosomal protein S25	IPR004977 (Ribosomal protein S25)	
Niben101Scf28836g00001.1	sp|P34422|DPF6_CAEEL	*-**	Dipeptidyl peptidase family member 6	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf02707g00006.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05480g01012.1			Unknown protein		
Niben101Scf00161g02007.1			Unknown protein		
Niben101Scf12994g00006.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf07381g02006.1	sp|Q9SUF9|PP305_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05734g00013.1	AT2G07749.1	*-*-	Mitovirus RNA-dependent RNA polymerase LENGTH=246	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf01510g00010.1	sp|A6WXW9|ATPA_OCHA4	*-**	ATP synthase subunit alpha	IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf02979g04003.1	AT5G64500.1	***-	Major facilitator superfamily protein LENGTH=484	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf11996g00011.1	AT2G33360.1	***-	Protein of unknown function (DUF3527) LENGTH=603	IPR021916 (Protein of unknown function DUF3527)	
Niben101Scf00725g01011.1	sp|Q8BW49|TTC12_MOUSE	--*-	Tetratricopeptide repeat protein 12	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf13167g00007.1	sp|A5D2S3|TRUB_PELTS	*-**	tRNA pseudouridine synthase B	IPR002501 (Pseudouridine synthase II), IPR015947 (PUA-like domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf17542g00013.1	AT4G35260.1	****	isocitrate dehydrogenase 1 LENGTH=367	IPR001804 (Isocitrate and isopropylmalate dehydrogenases family), IPR024084 (Isopropylmalate dehydrogenase-like domain)	GO:0000287 (magnesium ion binding), GO:0004449 (isocitrate dehydrogenase (NAD+) activity), GO:0006099 (tricarboxylic acid cycle), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf30582g00001.1	sp|Q8X6K6|AQPZ_ECO57	***-	Aquaporin Z	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01269g01001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01082g02010.1	gb|ADE61966.1|	*-*-	ubiquitin-protein ligase [Setaria italica]		
Niben101Scf02461g00004.1	AT1G56190.1	****	Phosphoglycerate kinase family protein LENGTH=478	IPR001576 (Phosphoglycerate kinase)	GO:0004618 (phosphoglycerate kinase activity), GO:0006096 (glycolytic process)
Niben101Scf01681g07003.1	AT3G47550.3	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=288	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022143 (Protein of unknown function DUF3675)	GO:0008270 (zinc ion binding)
Niben101Scf04392g04008.1	sp|Q38857|XTH22_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR008264 (Beta-glucanase), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf13802g00005.1			Unknown protein		
Niben101Scf01728g00003.1	sp|Q40163|PSBR_SOLLC	****	Photosystem II 10 kDa polypeptide, chloroplastic	IPR006814 (Photosystem II PsbR)	GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0042651 (thylakoid membrane)
Niben101Scf00988g02015.1	gb|KEH20772.1|	***-	lysine ketoglutarate reductase trans-splicing protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf07365g01038.1	AT2G22730.1	***-	Major facilitator superfamily protein LENGTH=510	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00808g05012.1	AT3G61850.4	****	Dof-type zinc finger DNA-binding family protein LENGTH=324	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf12330g02013.1	sp|O23482|OPT3_ARATH	***-	Oligopeptide transporter 3	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf03437g02006.1	sp|Q9S9M8|TLP8_ARATH	***-	Tubby-like protein 8	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf04339g05001.1	emb|CDY17282.1|	***-	BnaA10g09160D [Brassica napus]		
Niben101Scf02621g03012.1	sp|Q9SCU9|BGA13_ARATH	***-	Beta-galactosidase 13	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf12102g02011.1	sp|Q9ZQX4|VATF_ARATH	****	V-type proton ATPase subunit F	IPR008218 (ATPase, V1 complex, subunit F)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033180 (proton-transporting V-type ATPase, V1 domain), GO:0034220 (ion transmembrane transport), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf00083g04034.1	AT2G17760.1	*-*-	Eukaryotic aspartyl protease family protein LENGTH=513	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06955g04003.1			Unknown protein		
Niben101Scf02294g01002.1	sp|Q8GXL7|GAT24_ARATH	****	GATA transcription factor 24	IPR010399 (Tify), IPR010402 (CCT domain), IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf13683g02001.1	ref|NP_001060881.1|	*-*-	product [Oryza sativa Japonica Group]	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf00389g02010.1	AT2G37730.1	*-*-	Protein of unknown function (DUF604) LENGTH=532	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf03768g00007.1	ref|NP_001190042.1|	--*-	protein RESPONSE TO LOW SULFUR 1 [Arabidopsis thaliana] gb|AEE78560.1| response to low sulfur 1 protein [Arabidopsis thaliana]		
Niben101Scf01685g08002.1			Unknown protein		
Niben101Scf02227g05010.1	AT3G12620.1	****	Protein phosphatase 2C family protein LENGTH=385	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf01734g00007.1	ref|WP_032118911.1|	****	RNA methyltransferase [Clostridium sp. CL-2]	IPR004538 (Haemolysin A), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf20124g00014.1	sp|Q9CAL3|CRK2_ARATH	*-**	Cysteine-rich receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02222g00005.1	AT1G65690.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=252	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf01787g00071.1	sp|A8EXM0|GATB_RICCK	--*-	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B		
Niben101Scf02740g00002.1	ref|XP_002532637.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29740.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf10524g05008.1	sp|Q0E1D7|FLP3_ORYSJ	***-	Flowering-promoting factor 1-like protein 3		
Niben101Scf01463g01013.1	AT1G78915.3	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=405	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00291g02044.1	sp|Q9SSM2|MDLL_ARATH	*-*-	(R)-mandelonitrile lyase-like		
Niben101Scf08159g00006.1	ref|NP_001068324.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf09025g02031.1	sp|Q5RC69|DCTD_PONAB	***-	Deoxycytidylate deaminase	IPR015517 (Deoxycytidylate deaminase-related)	GO:0003824 (catalytic activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity)
Niben101Scf00744g02023.1	sp|Q82JT9|RNC_STRAW	--**	Ribonuclease 3	IPR011907 (Ribonuclease III)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0016075 (rRNA catabolic process)
Niben101Scf04918g05001.1	sp|P21616|AVP_VIGRR	****	Pyrophosphate-energized vacuolar membrane proton pump	IPR004131 (Pyrophosphate-energised proton pump)	GO:0004427 (inorganic diphosphatase activity), GO:0009678 (hydrogen-translocating pyrophosphatase activity), GO:0015992 (proton transport), GO:0016020 (membrane)
Niben101Scf03267g00040.1			Unknown protein		
Niben101Scf11952g01001.1	sp|Q9P1Y6|PHRF1_HUMAN	--*-	PHD and RING finger domain-containing protein 1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02249g00006.1	AT3G49590.3	***-	Autophagy-related protein 13 LENGTH=618	IPR018731 (Autophagy-related protein 13)	
Niben101Scf05373g01003.1	gb|AES64035.2|	--**	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf09459g02001.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01153g00009.1	AT4G29230.1	***-	NAC domain containing protein 75 LENGTH=498	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04869g06004.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00744g08015.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07578g00012.1			Unknown protein		
Niben101Scf07850g08002.1	dbj|BAP55002.1|	***-	O-linked N-acetylglucosamine transferase, SPINDLY family [Thioploca ingrica]	IPR029489 (O-GlcNAc transferase, C-terminal)	
Niben101Scf02569g01004.1	AT4G12280.1	*-**	copper amine oxidase family protein LENGTH=300	IPR000269 (Copper amine oxidase)	GO:0005507 (copper ion binding), GO:0008131 (primary amine oxidase activity), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02030g02011.1	sp|Q6PDH4|RNB3L_MOUSE	*-**	Ran-binding protein 3-like	IPR011993 (Pleckstrin homology-like domain), IPR015007 (Nuclear pore complex, NUP2/50/61)	GO:0005643 (nuclear pore), GO:0046907 (intracellular transport)
Niben101Scf00825g00016.1	sp|O74970|PRP39_SCHPO	*-**	Pre-mRNA-processing factor 39	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Scf09910g01004.1	sp|Q75HJ4|GL38_ORYSJ	*-*-	Germin-like protein 3-8	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf06984g02002.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00293g11014.1	emb|CDY15632.1|	*-*-	BnaA07g08030D [Brassica napus]		
Niben101Scf06685g00010.1	sp|Q43695|TBB3_MAIZE	***-	Tubulin beta-3 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf02530g08016.1	sp|A9WB97|GAL1_CHLAA	*-**	Galactokinase	IPR006206 (Mevalonate/galactokinase)	GO:0004335 (galactokinase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006012 (galactose metabolic process), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0016773 (phosphotransferase activity, alcohol group as acceptor), GO:0046835 (carbohydrate phosphorylation)
Niben101Scf12919g00005.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf08162g00028.1	AT5G66550.1	***-	Maf-like protein LENGTH=207	IPR029001 (Inosine triphosphate pyrophosphatase-like)	GO:0005737 (cytoplasm)
Niben101Scf07678g07012.1	tpg|DAA58214.1|	***-	TPA: hypothetical protein ZEAMMB73_738830 [Zea mays]		
Niben101Scf07325g00005.1	sp|Q9LZ99|EXPA9_ARATH	***-	Expansin-A9	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf09976g00018.1	sp|Q9SUT9|RTNLB_ARATH	***-	Reticulon-like protein B2	IPR003388 (Reticulon)	
Niben101Scf05077g01012.1	dbj|BAI47777.1|	*-**	CCHC-type zinc finger, nucleic acid binding protein [Sus scrofa]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf01825g03009.1	ref|NP_001052968.1|	***-	product [Oryza sativa Japonica Group]	IPR008976 (Lipase/lipooxygenase, PLAT/LH2)	GO:0005515 (protein binding)
Niben101Scf00379g01003.1			Unknown protein		
Niben101Scf00980g07010.1	AT3G47930.1	****	L-galactono-1,4-lactone dehydrogenase LENGTH=610	IPR007173 (D-arabinono-1,4-lactone oxidase), IPR010029 (Galactonolactone dehydrogenase), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0003885 (D-arabinono-1,4-lactone oxidase activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0016633 (galactonolactone dehydrogenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf19975g01013.1	emb|CDX71022.1|	***-	BnaC03g11060D [Brassica napus]	IPR012862 (Protein of unknown function DUF1635)	
Niben101Scf00830g05006.1	gb|KEH35417.1|	*-*-	organic solute transporter ostalpha protein [Medicago truncatula]	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184), IPR019510 (Protein kinase A anchor protein, nuclear localisation signal domain)	
Niben101Scf01061g08014.1	sp|Q8L7G3|CRK7_ARATH	*-**	Cysteine-rich receptor-like protein kinase 7	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01718g03006.1	AT3G51370.1	****	Protein phosphatase 2C family protein LENGTH=379	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf02786g00016.1	AT1G61415.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=167		
Niben101Scf06345g03005.1	gb|ACZ52183.1|	***-	ribosomal protein L10 (mitochondrion) [Digitalis purpurea]		
Niben101Scf01740g12012.1	sp|A6UNU0|AROE_METVS	****	Shikimate dehydrogenase	IPR013708 (Shikimate dehydrogenase substrate binding, N-terminal), IPR013785 (Aldolase-type TIM barrel), IPR016040 (NAD(P)-binding domain), IPR022893 (Shikimate, quinate/shikimate dehydrogenase)	GO:0003824 (catalytic activity), GO:0003855 (3-dehydroquinate dehydratase activity), GO:0004764 (shikimate 3-dehydrogenase (NADP+) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03437g02007.1	sp|Q8K0E7|SERC2_MOUSE	***-	Serine incorporator 2	IPR005016 (Serine incorporator/TMS membrane protein)	GO:0016020 (membrane)
Niben101Scf12983g01009.1	gb|ABA97040.1|	*-*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf03991g01007.1	sp|Q6AUG0|U2AFB_ORYSJ	*-*-	Splicing factor U2af small subunit B		
Niben101Scf02030g00021.1	AT1G79910.1	*-*-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=381	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf17372g01005.1	ref|WP_024682689.1|	***-	FAD-dependent oxidoreductase [Pseudomonas syringae]		
Niben101Scf04827g04023.1	AT5G51140.2	*-**	Pseudouridine synthase family protein LENGTH=410	IPR000994 (Peptidase M24, structural domain), IPR020103 (Pseudouridine synthase, catalytic domain), IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0004177 (aminopeptidase activity), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity), GO:0030145 (manganese ion binding)
Niben101Scf05972g02004.1	sp|Q8W108|MTND3_ARATH	*-**	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3	IPR004313 (Acireductone dioxygenase ARD family)	GO:0010309 (acireductone dioxygenase [iron(II)-requiring] activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09834g00007.1	sp|Q9ZUN5|TET2_ARATH	***-	Tetraspanin-2	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf00317g08004.1	AT4G16563.1	***-	Eukaryotic aspartyl protease family protein LENGTH=499	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03526g01005.1	sp|Q14498|RBM39_HUMAN	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01051g10023.1	sp|Q84W04|CNIH4_ARATH	***-	Protein cornichon homolog 4	IPR003377 (Cornichon)	GO:0016020 (membrane), GO:0035556 (intracellular signal transduction)
Niben101Scf09512g04021.1	sp|Q9XJ66|MAD22_ORYSJ	*-*-	MADS-box transcription factor 22	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf16660g01015.1	sp|Q5VYY2|LIPM_HUMAN	***-	Lipase member M	IPR006693 (Partial AB-hydrolase lipase domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf04878g00009.1	sp|Q7KT91|C3390_DROME	--*-	Non-lysosomal glucosylceramidase		
Niben101Scf02537g02002.1	sp|B0KAI8|SYS_THEP3	****	Serine--tRNA ligase	IPR002317 (Serine-tRNA ligase, type1)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004828 (serine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006434 (seryl-tRNA aminoacylation)
Niben101Scf00339g10009.1	sp|A8C754|THADA_CHICK	*-*-	Thyroid adenoma-associated protein homolog	IPR016024 (Armadillo-type fold), IPR019442 (Domain of unknown function DUF2428, death-receptor-like)	GO:0005488 (binding)
Niben101Scf04995g18023.1	sp|Q9STX1|ACBP3_ARATH	*-**	Acyl-CoA-binding domain-containing protein 3	IPR014352 (FERM/acyl-CoA-binding protein, 3-helical bundle)	GO:0000062 (fatty-acyl-CoA binding)
Niben101Scf06736g07004.1	AT4G25660.1	*-*-	PPPDE putative thiol peptidase family protein LENGTH=255	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf06590g05001.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf03005g00005.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf22376g00012.1	AT5G52160.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=96	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf11785g01002.1	pir||S14115	*-*-	NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion		
Niben101Scf04220g01008.1	emb|CDY24256.1|	*-*-	BnaC03g42290D [Brassica napus]		
Niben101Scf01591g00016.1	sp|P24806|XTH24_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 24	IPR010713 (Xyloglucan endo-transglycosylase, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf09217g00006.1	gb|ADL36919.1|	*-*-	At1g62390-like protein [Arabidopsis lyrata subsp. lyrata]	IPR000270 (Phox/Bem1p), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05631g00010.1	sp|P86809|NLTP2_APIGA	***-	Non-specific lipid-transfer protein 2	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf30418g00008.1	AT2G39430.1	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=322	IPR004265 (Plant disease resistance response protein)	
Niben101Scf07833g00004.1	sp|Q21988|AMX1_CAEEL	--*-	Amine oxidase family member 1	IPR002937 (Amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07027g05009.1			Unknown protein		
Niben101Scf00107g03010.1	sp|Q1GTB8|KYNB_SPHAL	****	Kynurenine formamidase	IPR007325 (Kynurenine formamidase)	GO:0004061 (arylformamidase activity), GO:0019441 (tryptophan catabolic process to kynurenine)
Niben101Scf08984g03004.1	sp|P0C8Q7|PP369_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06909g00004.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf16613g04012.1	sp|Q9FJX6|FH6_ARATH	*-*-	Formin-like protein 6	IPR015425 (Formin, FH2 domain)	
Niben101Scf00239g03009.1	sp|P0C870|JMJD7_HUMAN	***-	JmjC domain-containing protein 7	IPR003347 (JmjC domain)	
Niben101Scf04015g02022.1			Unknown protein		
Niben101Scf00503g03007.1	sp|O22190|GH33_ARATH	***-	Indole-3-acetic acid-amido synthetase GH3.3	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf02354g02001.1	AT5G19650.1	*-*-	ovate family protein 8 LENGTH=221	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf28199g00001.1	sp|Q39247|2ABB_ARATH	****	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	IPR000009 (Protein phosphatase 2A, regulatory subunit PR55), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0000159 (protein phosphatase type 2A complex), GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf06942g02012.1	AT1G07030.1	***-	Mitochondrial substrate carrier family protein LENGTH=326	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf08855g02005.1	sp|Q5PNY6|PUB21_ARATH	***-	U-box domain-containing protein 21	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf06332g03007.1	AT1G65800.1	****	receptor kinase 2 LENGTH=847	IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021820 (S-locus receptor kinase, C-terminal)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03011g01021.1	gb|KEH32729.1|	****	homeobox/lipid-binding domain protein [Medicago truncatula]	IPR002913 (START domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf05805g02005.1	ref|XP_007011041.1|	--*-	Zinc finger, CCHC-type-like protein [Theobroma cacao] gb|EOY19851.1| Zinc finger, CCHC-type-like protein [Theobroma cacao]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf07257g00008.1	AT1G29500.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03226g04024.1	dbj|BAD35335.1|	*-*-	loricrin-like [Oryza sativa Japonica Group]		
Niben101Scf01814g01012.1	sp|O80713|SDR3A_ARATH	-***	Short-chain dehydrogenase reductase 3a	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf00157g04002.1	sp|Q8BIZ6|SNIP1_MOUSE	*-*-	Smad nuclear-interacting protein 1		
Niben101Scf12935g00042.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04745g07012.1	sp|Q96MF7|NSE2_HUMAN	--**	E3 SUMO-protein ligase NSE2	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR026846 (E3 SUMO-protein ligase Nse2 (Mms21))	GO:0000724 (double-strand break repair via homologous recombination), GO:0019789 (SUMO transferase activity), GO:0030915 (Smc5-Smc6 complex)
Niben101Scf00435g05026.1	sp|Q6IP65|RCD1_XENLA	***-	Cell differentiation protein RCD1 homolog	IPR007216 (Rcd1), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf06778g05001.1	sp|A6QL92|S35F5_BOVIN	***-	Solute carrier family 35 member F5	IPR000620 (EamA domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf05960g00004.1	sp|Q9FKH1|SAP_ARATH	***-	Transcriptional regulator STERILE APETALA	IPR001810 (F-box domain), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf16015g00003.1	gb|ACZ73649.1|	*-*-	glycine-rich protein precursor [Nicotiana tabacum]	IPR010800 (Glycine rich protein)	
Niben101Scf08721g01029.1	sp|Q39017|DGK1_ARATH	****	Diacylglycerol kinase 1	IPR000756 (Diacylglycerol kinase, accessory domain), IPR001206 (Diacylglycerol kinase, catalytic domain), IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol-binding domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process), GO:0035556 (intracellular signal transduction)
Niben101Scf01397g00017.1	ref|NP_001049221.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf03035g04004.1	sp|Q8RXS6|INO80_ARATH	*-*-	DNA helicase INO80	IPR020838 (DBINO domain)	GO:0016817 (hydrolase activity, acting on acid anhydrides)
Niben101Scf09819g03002.1			Unknown protein		
Niben101Scf04560g03001.1	sp|P37891|CBP3_ORYSJ	****	Serine carboxypeptidase 3	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04120g02015.1	sp|Q9R0X4|ACOT9_MOUSE	***-	Acyl-coenzyme A thioesterase 9, mitochondrial	IPR029069 (HotDog domain)	
Niben101Scf04060g01005.1	AT1G66510.1	***-	AAR2 protein family LENGTH=399	IPR007946 (A1 cistron-splicing factor, AAR2)	
Niben101Scf11303g01015.1	AT5G23100.1	***-	Protein of unknown function, DUF617 LENGTH=277	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf02944g00002.1	sp|Q2MIK1|ATPF_SOLBU	*-*-	ATP synthase subunit b, chloroplastic		
Niben101Scf04549g10022.1	sp|Q9SCV4|BGAL8_ARATH	***-	Beta-galactosidase 8	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf07152g01003.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf06482g00020.1	AT2G37650.1	***-	GRAS family transcription factor LENGTH=718	IPR005202 (Transcription factor GRAS)	
Niben101Scf00317g04011.1	AT5G47470.1	****	Nodulin MtN21 /EamA-like transporter family protein LENGTH=364	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf02639g04021.1	AT2G39340.1	***-	SAC3/GANP/Nin1/mts3/eIF-3 p25 family LENGTH=1006	IPR005062 (SAC3/GANP/Nin1/mts3/eIF-3 p25)	
Niben101Scf00207g02002.1	sp|P50162|TRN1_DATST	****	Tropinone reductase 1	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02237g09014.1	sp|Q9FXT6|PEX14_ARATH	*-*-	Peroxisomal membrane protein PEX14		
Niben101Scf03851g02016.1	sp|P15688.2|NU2M_BETVU	*-*-	RecName: Full=NADH-ubiquinone oxidoreductase chain 2; AltName: Full=NADH dehydrogenase subunit 2 (mitochondrion) [Beta vulgaris] emb|CAA34728.1| NADH:ubiquinone reductase subunit 2 [Beta vulgaris subsp. vulgaris]		
Niben101Scf06687g03005.1	sp|Q8Z3X3|YQFB_SALTI	--*-	UPF0267 protein YqfB		
Niben101Scf00270g03008.1			Unknown protein		
Niben101Scf05057g04003.1	sp|P61026|RAB10_HUMAN	*-*-	Ras-related protein Rab-10	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf08698g02016.1	sp|Q8W1E0|R1A_SOLDE	*-*-	Late blight resistance protein R1-A		
Niben101Scf10152g03001.1	sp|Q6TDP3|KLH17_MOUSE	*-*-	Kelch-like protein 17	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf30596g00003.1	AT3G25160.1	****	ER lumen protein retaining receptor family protein LENGTH=272	IPR000133 (ER lumen protein retaining receptor)	GO:0006621 (protein retention in ER lumen), GO:0016021 (integral component of membrane), GO:0046923 (ER retention sequence binding)
Niben101Scf02869g05001.1	sp|Q8W1W9|5MAT1_SALSN	*-*-	Malonyl-coenzyme:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf09234g03022.1	sp|Q0WP44|HASTY_ARATH	***-	Protein HASTY 1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf28100g00004.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY), IPR018872 (Zn-cluster domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg11603g00003.1	emb|CDY12549.1|	***-	BnaC06g00750D [Brassica napus]		
Niben101Scf01124g27027.1	sp|Q84MA5|CAAT1_ARATH	****	Cationic amino acid transporter 1	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf02151g00002.1	AT1G69080.1	***-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=223	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf07664g01012.1	AT1G20925.1	*-*-	Auxin efflux carrier family protein LENGTH=472	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01506g03003.1	AT5G60900.1	*-**	receptor-like protein kinase 1 LENGTH=748	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf02767g06012.1	ref|XP_003636005.1|	--*-	Helicase-like protein [Medicago truncatula]		
Niben101Scf05222g04018.1			Unknown protein		
Niben101Scf05690g00002.1			Unknown protein	IPR000167 (Dehydrin)	GO:0006950 (response to stress), GO:0009415 (response to water)
Niben101Scf02929g05029.1	sp|A9MAI2|NUOD_BRUC2	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06646g00014.1	sp|Q9M815|PCR8_ARATH	***-	Protein PLANT CADMIUM RESISTANCE 8	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf09101g04020.1	AT1G16870.1	***-	mitochondrial 28S ribosomal protein S29-related LENGTH=480	IPR019368 (Ribosomal protein S23/S29, mitochondrial)	
Niben101Scf05928g03007.1	sp|P93194|RPK1_IPONI	****	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00272g11021.1	sp|O59306|RS4_PYRHO	****	30S ribosomal protein S4	IPR001912 (Ribosomal protein S4/S9, N-terminal), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0006412 (translation), GO:0015935 (small ribosomal subunit), GO:0019843 (rRNA binding)
Niben101Scf03987g00007.1	AT3G10200.1	*-*-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=591	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf05439g02049.1	sp|B6ISW8|NUON_RHOCS	*-*-	NADH-quinone oxidoreductase subunit N		
Niben101Scf00355g01008.1	AT3G17000.1	***-	ubiquitin-conjugating enzyme 32 LENGTH=309	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf10900g01012.1			Unknown protein		
Niben101Scf11589g01002.1	sp|O42260|GEMI2_XENLA	***-	Gem-associated protein 2	IPR007022 (Gem-associated protein 2)	GO:0000387 (spliceosomal snRNP assembly), GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf04253g01001.1	emb|CDO45724.1|	***-	Protein glycosylationmyb-like TTH transcriptional regulator, partial [Leucadendron salicifolium]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03133g00003.1	sp|Q5HF86|G3P2_STAAC	***-	Glyceraldehyde-3-phosphate dehydrogenase 2	IPR003823 (Domain of unknown function CP12), IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf01450g04004.1	sp|Q07839|EG13_ECHGR	--*-	Antigen EG13		
Niben101Scf38001g00003.1	sp|C0LU16|MED21_ARATH	***-	Mediator of RNA polymerase II transcription subunit 21	IPR021384 (Mediator complex, subunit Med21)	
Niben101Scf02798g00043.1	sp|Q07QX3|NUOCD_RHOP5	--**	NADH-quinone oxidoreductase subunit C/D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09133g01007.1	sp|Q9C7C3|C3H36_ARATH	*-*-	Zinc finger CCCH domain-containing protein 36	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf01607g06011.1	AT3G58610.1	*-**	ketol-acid reductoisomerase LENGTH=591	IPR013023 (Acetohydroxy acid isomeroreductase)	GO:0004455 (ketol-acid reductoisomerase activity), GO:0009082 (branched-chain amino acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10015g08008.1			Unknown protein	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf02289g04005.1	sp|Q9LDL7|PAT1_ARATH	--**	Scarecrow-like transcription factor PAT1	IPR005202 (Transcription factor GRAS), IPR030008 (Scarecrow-like protein 3)	GO:0000989 (transcription factor binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf01634g04001.1	sp|Q03773|E13A_SOYBN	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06933g02030.1	sp|A0LII3|RL7_SYNFM	*-*-	50S ribosomal protein L7/L12	IPR000206 (Ribosomal protein L7/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05873g00003.1	AT1G50450.1	***-	Saccharopine dehydrogenase LENGTH=428	IPR005097 (Saccharopine dehydrogenase / Homospermidine synthase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01641g01011.1	sp|Q72GU1|ODBA_THET2	***-	2-oxoisovalerate dehydrogenase subunit alpha	IPR001017 (Dehydrogenase, E1 component), IPR029061 (Thiamin diphosphate-binding fold)	GO:0008152 (metabolic process), GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor)
Niben101Scf02010g04027.1	sp|Q0BSL2|NUOK_GRABC	****	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf10997g03004.1	sp|O97397|CATLL_PHACE	--*-	Cathepsin L-like proteinase	IPR013128 (Peptidase C1A)	
Niben101Scf00215g00014.1	sp|O64668|PSNA_ARATH	***-	Presenilin-like protein	IPR006639 (Presenilin/signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf07339g02009.1	gb|KEH28278.1|	--*-	peroxisomal membrane carrier protein [Medicago truncatula]		
Niben101Scf00321g03006.1	sp|Q9SI78|PPR93_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01380g01021.1	AT2G33170.1	*-**	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05203g05001.1	gb|KEH17170.1|	****	plant invertase/pectin methylesterase inhibitor [Medicago truncatula]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf08898g00002.1	sp|Q7TTX1|CH601_SYNPX	***-	60 kDa chaperonin 1	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding), GO:0042026 (protein refolding), GO:0044267 (cellular protein metabolic process)
Niben101Scf01956g08006.1	sp|Q86A67|ALF_DICDI	****	Fructose-bisphosphate aldolase	IPR000741 (Fructose-bisphosphate aldolase, class-I), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004332 (fructose-bisphosphate aldolase activity), GO:0006096 (glycolytic process)
Niben101Scf28780g01002.1	AT5G06860.1	***-	polygalacturonase inhibiting protein 1 LENGTH=330	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf08415g01032.1	dbj|BAB10527.1|	*-*-	low-temperature-induced 65 kD protein [Arabidopsis thaliana]	IPR012418 (CAP160)	
Niben101Scf05118g01012.1			Unknown protein		
Niben101Scf00535g00010.1	sp|O42993|FKBP_SCHPO	***-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf01538g05006.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00223g03017.1	sp|Q9FVI1|ADF2_PETHY	****	Actin-depolymerizing factor 2	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf13854g00010.1	sp|Q9LQ55|DRP2B_ARATH	***-	Dynamin-2B	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR011993 (Pleckstrin homology-like domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf05142g00005.1			Unknown protein		
Niben101Ctg16209g00001.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf02160g00026.1	emb|CED79820.1|	*-*-	Ycf1 protein (chloroplast) [Hesperelaea palmeri]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf02733g00018.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02451g10018.1	AT2G39500.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=55		
Niben101Scf30958g00002.1	AT5G19590.1	***-	Protein of unknown function, DUF538 LENGTH=151	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf03810g09006.1	gb|ABA91837.2|	--*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf00240g01004.1	sp|Q8HQQ4|MATK_PINRO	*-*-	Maturase K	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf03166g00020.1			Unknown protein		
Niben101Scf10712g00036.1	gb|AET79022.1|	*-*-	At3g55060-like protein [Arabidopsis halleri]		
Niben101Scf02050g01025.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05089g00007.1	sp|Q6FFL8|MAO1_ACIAD	****	NAD-dependent malic enzyme	IPR001891 (Malic oxidoreductase)	GO:0004470 (malic enzyme activity), GO:0004471 (malate dehydrogenase (decarboxylating) (NAD+) activity), GO:0006108 (malate metabolic process), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02752g10009.1	AT5G18650.1	****	CHY-type/CTCHY-type/RING-type Zinc finger protein LENGTH=267	IPR004039 (Rubredoxin-type fold), IPR008913 (Zinc finger, CHY-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017921 (Zinc finger, CTCHY-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf05993g00014.1	sp|Q0WPZ6|PP158_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02499g03002.1	AT4G18975.1	***-	Pentatricopeptide repeat (PPR) superfamily protein LENGTH=287		
Niben101Scf13098g00007.1	sp|Q9FGW5|CDKG1_ARATH	*-**	Cyclin-dependent kinase G1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03915g00002.1	sp|P62729|RR7_ATRBE	*-*-	30S ribosomal protein S7, chloroplastic		
Niben101Scf09775g00006.1	sp|Q9SD82|RFA1B_ARATH	--*-	Replication protein A 70 kDa DNA-binding subunit B	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf00425g01001.1	sp|Q8BT14|CNOT4_MOUSE	*-*-	CCR4-NOT transcription complex subunit 4	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08699g00006.1	gb|AAB18261.1|	*-*-	glycine-rich protein, partial [Nicotiana tabacum]		
Niben101Scf11649g01004.1	sp|F4JRE0|TMN12_ARATH	***-	Transmembrane 9 superfamily member 12	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf10440g00023.1	sp|Q3T0N5|MK13_BOVIN	--**	Mitogen-activated protein kinase 13	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03857g04001.1	AT4G15840.1	***-	BTB/POZ domain-containing protein LENGTH=836	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf00416g01008.1	ref|NP_001058478.1|	***-	product [Oryza sativa Japonica Group]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf00519g00014.1	sp|Q8DMM5|RL16_THEEB	*-*-	50S ribosomal protein L16	IPR000114 (Ribosomal protein L16), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf12199g00005.1	emb|CDY44827.1|	*-*-	BnaCnng11830D [Brassica napus]		
Niben101Scf11886g03036.1	emb|CDY68259.1|	*-*-	BnaCnng58260D [Brassica napus]		
Niben101Scf00739g04025.1	AT2G25570.1	****	binding LENGTH=288	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03840g02005.1			Unknown protein		
Niben101Scf02968g06009.1	AT1G05060.1	***-	unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=253		
Niben101Scf03419g15004.1	ref|XP_002533569.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF28804.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06976g03014.1	sp|Q08BM8|CNOT7_DANRE	***-	CCR4-NOT transcription complex subunit 7	IPR006941 (Ribonuclease CAF1), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Scf11588g00008.1	ref|XP_002509953.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF51340.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03428g00001.1	sp|Q6DW74|DGDG1_LOTJA	***-	Digalactosyldiacylglycerol synthase 1, chloroplastic		
Niben101Scf03964g01003.1	sp|Q9S7L9|CX6B1_ARATH	*-**	Cytochrome c oxidase subunit 6b-1	IPR003213 (Cytochrome c oxidase, subunit VIb)	GO:0004129 (cytochrome-c oxidase activity), GO:0005739 (mitochondrion)
Niben101Scf05956g01010.1	sp|Q8W4H1|GAT26_ARATH	****	GATA transcription factor 26	IPR013088 (Zinc finger, NHR/GATA-type), IPR028020 (ASX homology domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf33912g00003.1	sp|Q6GPJ5|LRC40_XENLA	*-*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02062g01003.1	AT1G64185.1	***-	Lactoylglutathione lyase / glyoxalase I family protein LENGTH=118	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf04739g00023.1	sp|Q2NFZ6|RPOD_METST	****	DNA-directed RNA polymerase subunit D	IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf07849g01019.1	AT5G61210.1	***-	soluble N-ethylmaleimide-sensitive factor adaptor protein 33 LENGTH=300	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Ctg12738g00002.1			Unknown protein		
Niben101Scf15077g00007.1	AT1G11090.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=324	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00419g05006.1	AT3G12120.1	*-*-	fatty acid desaturase 2 LENGTH=383		
Niben101Scf03035g02001.1	gb|ABS79080.1|	***-	At4g28395-like protein [Arabidopsis lyrata subsp. petraea]	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00366g00011.1	sp|Q9XHL7|TCTP_TOBAC	***-	Translationally-controlled tumor protein homolog	IPR018105 (Translationally controlled tumour protein)	
Niben101Scf02264g01003.1	sp|H3K2Y6|MED12_ARATH	****	Mediator of RNA polymerase II transcription subunit 12	IPR019035 (Mediator complex, subunit Med12)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf13411g05026.1	AT3G08590.1	****	Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent LENGTH=560	IPR005995 (Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent)	GO:0003824 (catalytic activity), GO:0004619 (phosphoglycerate mutase activity), GO:0005737 (cytoplasm), GO:0006007 (glucose catabolic process), GO:0008152 (metabolic process), GO:0030145 (manganese ion binding), GO:0046872 (metal ion binding)
Niben101Scf01266g01002.1	sp|Q54C85|IP13A_DICDI	*-*-	Importin-13 homolog A	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00675g01012.1	emb|CDX94322.1|	*-*-	BnaC01g18620D [Brassica napus]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf05674g04004.1	AT5G66960.1	***-	Prolyl oligopeptidase family protein LENGTH=792	IPR002470 (Peptidase S9A, prolyl oligopeptidase), IPR023302 (Peptidase S9A, N-terminal domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0070008 (serine-type exopeptidase activity)
Niben101Scf08446g03019.1	AT2G16920.1	*-*-	ubiquitin-conjugating enzyme 23 LENGTH=1102	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf07895g00007.1	sp|Q47R55|TRPD_THEFY	****	Anthranilate phosphoribosyltransferase	IPR005940 (Anthranilate phosphoribosyl transferase)	GO:0000162 (tryptophan biosynthetic process), GO:0004048 (anthranilate phosphoribosyltransferase activity), GO:0008152 (metabolic process), GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf01661g00012.1	emb|CDY19735.1|	***-	BnaA09g03880D [Brassica napus]	IPR018143 (Folate receptor-like)	
Niben101Scf14273g00010.1	emb|CDX87551.1|	*-*-	BnaA07g33220D [Brassica napus]		
Niben101Scf01761g00001.1			Unknown protein	IPR013177 (Domain of unknown function DUF1713, mitochondria)	
Niben101Scf02685g00004.1	AT1G60140.1	****	trehalose phosphate synthase LENGTH=861	IPR001830 (Glycosyl transferase, family 20)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process)
Niben101Scf05159g00002.1	sp|Q9SI96|H2B3_ARATH	***-	Histone H2B.3	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf00542g05006.1	sp|O21241|NDUS1_RECAM	****	NADH-ubiquinone oxidoreductase 75 kDa subunit	IPR010228 (NADH:ubiquinone oxidoreductase, subunit G), IPR012675 (Beta-grasp domain)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0051536 (iron-sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf17538g00008.1	sp|Q0WUQ1|BAG1_ARATH	****	BAG family molecular chaperone regulator 1	IPR003103 (BAG domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf09846g01002.1	gb|KEH26132.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf03479g05049.1	gb|ACZ64221.1|	***-	RPM1 interacting protein 4 transcript 2 [Lactuca saligna]	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Ctg15953g00002.1	sp|A6ZP47|DED1_YEAS7	*-*-	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf08179g01016.1	sp|Q7XJE6|MCA1_ARATH	***-	Metacaspase-1	IPR005735 (Zinc finger, LSD1-type), IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf13231g02014.1	gb|AGN30751.1|	*-*-	chaperonin-like protein, partial [Nostoc sp. 'Gunnera magellanica cyanobiont']	IPR003435 (Chaperonin-like RbcX)	
Niben101Scf12866g00026.1	AT4G18710.1	****	Protein kinase superfamily protein LENGTH=380	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02414g03011.1	AT2G42260.1	***-	uv-b-insensitive 4 LENGTH=259		
Niben101Scf00984g04002.1	AT1G14720.1	****	xyloglucan endotransglucosylase/hydrolase 28 LENGTH=332	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf02042g01011.1	AT5G56530.1	***-	Protein of Unknown Function (DUF239) LENGTH=420	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf00046g09025.1	gb|AES78631.2|	*-*-	acting on ester bonds hydrolase [Medicago truncatula]		
Niben101Scf00406g00001.1	sp|Q9ZPY6|ARFK_ARATH	*-**	Auxin response factor 11	IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone)
Niben101Scf05057g01013.1			Unknown protein		
Niben101Scf17542g00012.1	gb|AAD40381.1|	****	vesicle transport-related protein [Homo sapiens]	IPR001619 (Sec1-like protein), IPR027482 (Sec1-like, domain 2)	GO:0006904 (vesicle docking involved in exocytosis), GO:0016192 (vesicle-mediated transport)
Niben101Scf00219g07013.1	ref|NP_001275187.1|	--*-	SRE1A protein [Solanum tuberosum] gb|AAB93771.1| SRE1a [Solanum tuberosum]		
Niben101Scf11158g00004.1	sp|Q7XJ98|KATAM_ARATH	***-	Xyloglucan galactosyltransferase KATAMARI1	IPR004263 (Exostosin-like)	
Niben101Scf00519g00015.1	sp|Q17QV2|MON1A_BOVIN	***-	Vacuolar fusion protein MON1 homolog A	IPR004353 (Vacuolar fusion protein MON1)	
Niben101Scf05750g01010.1	sp|Q5A4W8|BDF1_CANAL	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf00161g02006.1	sp|B7UP69|YCEA_ECO27	***-	UPF0176 protein YceA	IPR001763 (Rhodanese-like domain)	
Niben101Scf04276g04026.1	gb|ACG39131.1|	****	transferase, transferring glycosyl groups [Zea mays]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf08495g00010.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01304g13001.1	sp|Q9FJ57|TRN1_ARATH	*-*-	Protein TORNADO 1	IPR003590 (Leucine-rich repeat, ribonuclease inhibitor subtype), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01999g06009.1	sp|Q38861|XPB1_ARATH	****	DNA repair helicase XPB1	IPR001161 (Helicase Ercc3), IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0004003 (ATP-dependent DNA helicase activity), GO:0005524 (ATP binding), GO:0006289 (nucleotide-excision repair), GO:0016787 (hydrolase activity)
Niben101Scf01817g02023.1	sp|P35134|UBC11_ARATH	*-*-	Ubiquitin-conjugating enzyme E2 11	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf15903g01003.1	AT1G15030.1	***-	Protein of unknown function (DUF789) LENGTH=360	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf04993g03001.1	ref|WP_007900280.1|	--*-	dTDP-4-dehydrorhamnose reductase [Prevotella stercorea] gb|EHJ39418.1| dTDP-4-dehydrorhamnose reductase [Prevotella stercorea DSM 18206]		
Niben101Scf03934g00016.1	ref|XP_007024682.1|	***-	Tetratricopeptide repeat-like superfamily protein isoform 1 [Theobroma cacao] gb|EOY27304.1| Tetratricopeptide repeat-like superfamily protein isoform 1 [Theobroma cacao]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01319g06012.1	ref|NP_001041883.1|	*-*-	product [Oryza sativa Japonica Group]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Ctg15523g00002.1	sp|Q02978|M2OM_HUMAN	-**-	Mitochondrial 2-oxoglutarate/malate carrier protein	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf08729g02018.1	sp|Q6DFH9|NIP7_XENLA	***-	60S ribosome subunit biogenesis protein NIP7 homolog	IPR015947 (PUA-like domain)	GO:0003723 (RNA binding)
Niben101Scf02535g04014.1	emb|CDY57106.1|	***-	BnaC04g56930D [Brassica napus]	IPR009902 (Protein of unknown function DUF1442)	
Niben101Scf03446g04003.1	gb|KAK46980.1|	****	GCN5 family acetyltransferase [Burkholderia sp. MP-1]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf05089g00006.1	AT5G47390.1	***-	myb-like transcription factor family protein LENGTH=365	IPR001878 (Zinc finger, CCHC-type), IPR009057 (Homeodomain-like)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0008270 (zinc ion binding)
Niben101Scf13886g01019.1	sp|Q6Z2G9|TLP5_ORYSJ	***-	Tubby-like F-box protein 5	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf15166g03015.1	sp|Q1CZI7|HTPG_MYXXD	*-*-	Chaperone protein HtpG	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf00988g02014.1			Unknown protein		
Niben101Scf08673g00001.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01685g08003.1	gb|ADX62210.1|	--*-	Ycf1, partial (chloroplast) [Lepechinia caulescens]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf00149g11003.1			Unknown protein		
Niben101Scf00819g10005.1	sp|Q9NZM5|GSCR2_HUMAN	--*-	Glioma tumor suppressor candidate region gene 2 protein	IPR011687 (P60-like)	
Niben101Scf08921g02019.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf02854g01005.1	AT5G17190.1	****	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf18273g00005.1	gb|KEH37885.1|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf09234g01005.1	sp|Q69TG5|MAD55_ORYSJ	--*-	MADS-box transcription factor 55	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00764g03012.1	emb|CDX87732.1|	***-	BnaC02g32170D [Brassica napus]	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf37465g00001.1	sp|Q5KUK3|NUOK_GEOKA	--**	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf11895g03018.1	sp|B2HNG6|TIG_MYCMM	*-*-	Trigger factor	IPR005215 (Trigger factor), IPR027304 (Trigger factor/SurA domain)	GO:0006457 (protein folding), GO:0015031 (protein transport)
Niben101Scf02663g00004.1			Unknown protein		
Niben101Scf13527g00012.1	gb|AAY86774.1|	--*-	C2 domain-containing protein [Noccaea caerulescens]		
Niben101Scf02869g17005.1	sp|P41113|ACT3_PODCA	***-	Actin-3	IPR004000 (Actin family)	
Niben101Scf05319g04005.1	AT3G06145.1	***-	unknown protein; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=166		
Niben101Scf02858g00002.1	sp|Q76NT9|ACCO1_DICDI	***-	1-aminocyclopropane-1-carboxylate oxidase	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Ctg12652g00003.1	sp|P25865|UBC1_ARATH	*-*-	Ubiquitin-conjugating enzyme E2 1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf01687g05002.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf01852g00002.1	AT1G75760.1	****	ER lumen protein retaining receptor family protein LENGTH=272	IPR000133 (ER lumen protein retaining receptor)	GO:0006621 (protein retention in ER lumen), GO:0016021 (integral component of membrane), GO:0046923 (ER retention sequence binding)
Niben101Scf00885g18010.1	sp|Q9SH26|PP102_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf13505g02008.1	sp|Q2QQA3|MAD20_ORYSJ	--*-	MADS-box transcription factor 20	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf13199g00006.1	sp|P54654|CAP_DICDI	***-	Adenylyl cyclase-associated protein	IPR001837 (Adenylate cyclase-associated CAP), IPR017901 (C-CAP/cofactor C-like domain), IPR018106 (CAP, conserved site, N-terminal)	GO:0000902 (cell morphogenesis), GO:0003779 (actin binding), GO:0007010 (cytoskeleton organization)
Niben101Scf02804g00014.1	sp|P74306|ZDS_SYNY3	***-	Zeta-carotene desaturase	IPR002937 (Amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07980g01017.1	sp|Q15VI3|RLMF_PSEA6	*-**	Ribosomal RNA large subunit methyltransferase F	IPR010286 (Ribosomal RNA large subunit methyltransferase F-like)	GO:0008168 (methyltransferase activity)
Niben101Scf08975g02041.1	ref|NP_001045453.1|	--*-	OsJ_04827 [Oryza sativa Japonica Group]		
Niben101Scf04619g00001.1	gb|KEH37797.1|	***-	F-box/RNI/FBD-like domain protein [Medicago truncatula]		
Niben101Scf01108g06009.1	AT1G23480.1	***-	cellulose synthase-like A3 LENGTH=556	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf09582g01008.1	AT5G56180.1	***-	actin-related protein 8 LENGTH=471	IPR001810 (F-box domain), IPR004000 (Actin family)	GO:0005515 (protein binding)
Niben101Scf01226g01018.1	sp|Q5F470|RAB8A_CHICK	--*-	Ras-related protein Rab-8A	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf01018g04002.1	AT3G24880.1	*-*-	Helicase/SANT-associated, DNA binding protein LENGTH=1957		
Niben101Scf00854g08056.1	ref|XP_002518258.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF44144.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04383g01014.1	gb|AHI85713.1|	***-	stress-induced protein 8 [Capsicum annuum]		
Niben101Scf05643g05003.1	ref|NP_001052354.1|	***-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf01319g02012.1	AT1G19980.1	*-*-	cytomatrix protein-related LENGTH=342		
Niben101Scf09696g00032.1	sp|Q34876|CYB_LEMCA	--*-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity)
Niben101Scf00074g02028.1	sp|Q83FV7|FTSH_TROWT	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00472g03008.1	AT4G33940.1	***-	RING/U-box superfamily protein LENGTH=262		
Niben101Scf03788g00001.1	sp|Q39191|WAK1_ARATH	*-*-	Wall-associated receptor kinase 1	IPR000742 (Epidermal growth factor-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005515 (protein binding)
Niben101Scf22781g00011.1	AT5G38600.1	*-*-	Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein LENGTH=532	IPR006568 (PSP, proline-rich)	
Niben101Scf11266g05003.1	gb|AEM24937.1|	***-	thionin-like protein [Nicotiana tabacum]		
Niben101Scf09442g02009.1	AT4G35680.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=503	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf08041g02014.1	sp|Q94DG6|ZIP1_ORYSJ	****	Zinc transporter 1	IPR003689 (Zinc/iron permease)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04083g01026.1	AT5G53040.1	*-*-	RWP-RK domain-containing protein LENGTH=256	IPR003035 (RWP-RK domain)	
Niben101Scf01604g01018.1	tpg|DAA55898.1|	***-	TPA: hypothetical protein ZEAMMB73_963597 [Zea mays]	IPR029164 (Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y)	
Niben101Scf05348g01024.1	sp|Q41001|BCP_PEA	*-*-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf00163g18004.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03224g08001.1			Unknown protein		
Niben101Scf07129g01005.1	AT2G43840.2	*-*-	UDP-glycosyltransferase 74 F1 LENGTH=449	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03756g02015.1	AT3G03290.1	***-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=274	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf00582g01033.1	sp|Q5L1V4|ARGJ_GEOKA	****	Arginine biosynthesis bifunctional protein ArgJ	IPR002813 (Arginine biosynthesis protein ArgJ)	GO:0004358 (glutamate N-acetyltransferase activity), GO:0006526 (arginine biosynthetic process)
Niben101Scf01789g04010.1	sp|Q15782|CH3L2_HUMAN	****	Chitinase-3-like protein 2	IPR017853 (Glycoside hydrolase superfamily), IPR029070 (Chitinase insertion domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004568 (chitinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process)
Niben101Scf03152g00018.1	sp|P18290|PSBA_BRANA	****	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf02982g01025.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf09101g04021.1	sp|Q8GYP3|RDM4_ARATH	***-	RNA-directed DNA methylation 4		
Niben101Scf00158g00001.1	emb|CDY56587.1|	***-	BnaC07g48120D [Brassica napus]		
Niben101Scf06045g00015.1			Unknown protein		
Niben101Scf00398g06028.1	sp|Q9SFX2|PUB43_ARATH	*-*-	U-box domain-containing protein 43	IPR011989 (Armadillo-like helical)	
Niben101Scf04994g00002.1	ref|YP_005090400.1|	*-*-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf02767g06013.1	emb|CDY46869.1|	*-*-	BnaC01g27730D [Brassica napus]	IPR025476 (Helitron helicase-like domain)	
Niben101Scf02831g04004.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf21969g00004.1	sp|Q9LQZ5|SRS5_ARATH	***-	Protein SHI RELATED SEQUENCE 5	IPR007818 (Protein of unknown function DUF702)	
Niben101Scf07650g02001.1	sp|Q9FVI1|ADF2_PETHY	****	Actin-depolymerizing factor 2	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf14009g02016.1	sp|Q6DDF0|WDR37_XENLA	*-*-	WD repeat-containing protein 37	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf22213g00001.1	sp|Q54PT2|VPS4_DICDI	*-*-	Vacuolar protein sorting-associated protein 4	IPR007330 (MIT)	
Niben101Scf06437g03005.1	sp|Q9SL93|ASK3_ARATH	***-	SKP1-like protein 3	IPR001232 (S-phase kinase-associated protein 1-like), IPR011333 (BTB/POZ fold), IPR016072 (SKP1 component, dimerisation)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf01455g01012.1	sp|Q9SYZ9|TAF8_ARATH	*-*-	Transcription initiation factor TFIID subunit 8	IPR006565 (Bromodomain transcription factor), IPR009072 (Histone-fold)	GO:0046982 (protein heterodimerization activity)
Niben101Scf02316g03010.1	sp|Q84WM9|EF1B1_ARATH	****	Elongation factor 1-beta 1	IPR014717 (Translation elongation factor EF1B/ribosomal protein S6)	GO:0003746 (translation elongation factor activity), GO:0005853 (eukaryotic translation elongation factor 1 complex), GO:0006414 (translational elongation)
Niben101Scf00107g02002.1	sp|Q9FGQ7|CCD32_ARATH	***-	Cyclin-D3-2	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf00741g01012.1	AT5G11850.1	*-**	Protein kinase superfamily protein LENGTH=880	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11806g00020.1	sp|Q2QS13|UGDH5_ORYSJ	****	UDP-glucose 6-dehydrogenase 5	IPR017476 (UDP-glucose/GDP-mannose dehydrogenase)	GO:0003979 (UDP-glucose 6-dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02929g00050.1	sp|Q95738|CYB_ARTJA	*-*-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal), IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf02869g05002.1	AT5G39090.1	*-**	HXXXD-type acyl-transferase family protein LENGTH=448	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00756g01011.1	AT4G28220.1	***-	NAD(P)H dehydrogenase B1 LENGTH=571	IPR011992 (EF-hand domain pair), IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0005509 (calcium ion binding), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04610g06002.1	ref|WP_026256507.1|	****	methyltransferase [Mycobacterium sp. 155]	IPR007213 (Leucine carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf07567g01001.1	AT4G03420.1	*-*-	Protein of unknown function (DUF789) LENGTH=310	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf12112g04021.1	AT4G14000.1	***-	Putative methyltransferase family protein LENGTH=290	IPR019410 (Nicotinamide N-methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf06916g01011.1	sp|Q39013|NAC2_ARATH	*-*-	NAC domain-containing protein 2	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07763g02015.1	AT3G14205.1	***-	Phosphoinositide phosphatase family protein LENGTH=808	IPR002013 (SAC domain), IPR030213 (Phosphoinositide phosphatase SAC)	GO:0007033 (vacuole organization), GO:0036092 (phosphatidylinositol-3-phosphate biosynthetic process), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Ctg15714g00002.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf07893g00008.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01580g05004.1	sp|P50134|DCOR_DATST	***-	Ornithine decarboxylase	IPR000183 (Ornithine/DAP/Arg decarboxylase), IPR029066 (PLP-binding barrel)	GO:0003824 (catalytic activity), GO:0006596 (polyamine biosynthetic process)
Niben101Scf01941g01023.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01863g00004.1	ref|XP_002525292.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF37120.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04981g00002.1	sp|Q4UZH5|PUR7_XANC8	*-**	Phosphoribosylaminoimidazole-succinocarboxamide synthase	IPR013816 (ATP-grasp fold, subdomain 2), IPR028923 (SAICAR synthetase/ADE2, N-terminal)	GO:0004639 (phosphoribosylaminoimidazolesuccinocarboxamide synthase activity), GO:0005524 (ATP binding), GO:0006164 (purine nucleotide biosynthetic process)
Niben101Scf01807g01012.1	sp|A8QB25|PMIP_MALGO	****	Mitochondrial intermediate peptidase	IPR001567 (Peptidase M3A/M3B), IPR024077 (Neurolysin/Thimet oligopeptidase, domain 2), IPR024079 (Metallopeptidase, catalytic domain), IPR024080 (Neurolysin/Thimet oligopeptidase, N-terminal)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity)
Niben101Scf07327g01004.1	AT4G00350.1	*-*-	MATE efflux family protein LENGTH=542	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03298g02010.1	sp|Q8RXR2|CLCF_ARATH	*-**	Chloride channel protein CLC-f	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf17683g00003.1	sp|Q9LRZ0|TPR2_ARATH	*-*-	Topless-related protein 2	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif)	GO:0005515 (protein binding)
Niben101Scf14837g01004.1	gb|ABC69392.1|	--*-	CYP72A55v1 [Nicotiana tabacum]		
Niben101Scf03966g00001.1	sp|Q9FJD5|LAC17_ARATH	***-	Laccase-17	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01185g00004.1	sp|Q9LNW3|P2C03_ARATH	****	Protein phosphatase 2C 3	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf05414g01004.1	sp|Q54WR5|CCD94_DICDI	***-	Coiled-coil domain-containing protein 94 homolog	IPR007590 (CWC16 protein)	
Niben101Scf01993g03014.1	sp|Q93VV5|PTR16_ARATH	*-*-	Protein NRT1/ PTR FAMILY 4.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01385g11006.1	AT1G27760.3	***-	interferon-related developmental regulator family protein / IFRD protein family LENGTH=441	IPR007701 (Interferon-related developmental regulator, N-terminal)	
Niben101Scf09082g00009.1	sp|Q9LFC5|PP360_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05782g00002.1	sp|Q6ZMY6|WDR88_HUMAN	*-*-	WD repeat-containing protein 88	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02255g00004.1	AT5G05840.1	***-	Protein of unknown function (DUF620) LENGTH=439	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf12935g00043.1	sp|C5D6U5|MENE_GEOSW	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf16148g00003.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf01814g01011.1	sp|Q338N2|C3H62_ORYSJ	*-*-	Zinc finger CCCH domain-containing protein 62	IPR003034 (SAP domain)	
Niben101Scf06806g03005.1	sp|B1I2D4|RISB_DESAP	****	6,7-dimethyl-8-ribityllumazine synthase	IPR002180 (6,7-dimethyl-8-ribityllumazine synthase)	GO:0009231 (riboflavin biosynthetic process), GO:0009349 (riboflavin synthase complex)
Niben101Scf04827g00002.1	sp|Q84LH3|WEX_ARATH	****	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf00055g04003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05932g02001.1			Unknown protein		
Niben101Scf02461g00003.1	AT1G79550.1	****	phosphoglycerate kinase LENGTH=401	IPR001576 (Phosphoglycerate kinase)	GO:0004618 (phosphoglycerate kinase activity), GO:0006096 (glycolytic process)
Niben101Scf04432g08005.1	sp|B1L712|RS10_KORCO	****	30S ribosomal protein S10	IPR001848 (Ribosomal protein S10), IPR027486 (Ribosomal protein S10 domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf06186g02001.1	AT5G52430.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=438		
Niben101Scf10877g00006.1	sp|Q7UGJ6|CARA_RHOBA	****	Carbamoyl-phosphate synthase small chain	IPR006274 (Carbamoyl-phosphate synthase, small subunit), IPR029062 (Class I glutamine amidotransferase-like)	GO:0006543 (glutamine catabolic process), GO:0070409 (carbamoyl phosphate biosynthetic process)
Niben101Scf00528g01001.1	AT3G07450.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=106	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf06825g03008.1	sp|Q42656|AGAL_COFAR	***-	Alpha-galactosidase	IPR000111 (Glycoside hydrolase, clan GH-D), IPR013780 (Glycosyl hydrolase, family 13, all-beta)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08338g01016.1	sp|Q9LYT3|TT12_ARATH	--*-	Protein TRANSPARENT TESTA 12		
Niben101Scf06976g06002.1	sp|Q9C5T4|WRK18_ARATH	--*-	WRKY transcription factor 18		
Niben101Scf07650g01021.1	sp|P62822|RAB1A_CANFA	***-	Ras-related protein Rab-1A	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf08680g01007.1	gb|ABR25403.1|	****	transferase (transferring glycosyl group) [Oryza sativa Indica Group]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf00177g01009.1			Unknown protein		
Niben101Scf00083g04033.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09178g01017.1	sp|Q9EXP2|SUFS_DICD3	****	Cysteine desulfurase	IPR010970 (Cysteine desulfurase, SufS), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006534 (cysteine metabolic process), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding), GO:0031071 (cysteine desulfurase activity)
Niben101Ctg07039g00001.1	AT5G04160.1	*-*-	Nucleotide-sugar transporter family protein LENGTH=309	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf10438g00010.1	sp|Q40477|ERF4_TOBAC	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03213g01007.1	emb|CDX98312.1|	--*-	BnaC06g16730D [Brassica napus]		
Niben101Scf12383g01019.1	sp|Q9SGH2|MBD9_ARATH	*-**	Methyl-CpG-binding domain-containing protein 9	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR028942 (WHIM1 domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01682g00001.1	sp|Q5E930|SLAH1_ARATH	****	S-type anion channel SLAH1	IPR004695 (Voltage-dependent anion channel)	GO:0006873 (cellular ion homeostasis), GO:0008308 (voltage-gated anion channel activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf04339g02008.1	sp|Q94C53|DDRGK_ARATH	*-*-	DDRGK domain-containing protein 1	IPR019153 (DDRGK domain containing protein)	
Niben101Scf06458g00005.1	AT2G41950.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to 53 proteins in 24 species: Archae - 0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=266		
Niben101Scf00414g10013.1	sp|Q0DXZ1|CSLE2_ORYSJ	*-*-	Cellulose synthase-like protein E2		
Niben101Scf03507g03003.1	AT1G11700.1	***-	Protein of unknown function, DUF584 LENGTH=201	IPR007608 (Senescence regulator S40)	
Niben101Scf02437g06008.1	AT2G04540.1	***-	Beta-ketoacyl synthase LENGTH=461	IPR017568 (3-oxoacyl-[acyl-carrier-protein] synthase 2), IPR020841 (Polyketide synthase, beta-ketoacyl synthase domain)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf10442g00009.1	sp|B0JSE3|RS12_MICAN	*-**	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf01221g05019.1	AT4G13450.1	*-*-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=219	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf02971g02001.1	ref|XP_007022137.1|	-**-	Heat stress transcription factor B-4b, putative [Theobroma cacao] gb|EOY13662.1| Heat stress transcription factor B-4b, putative [Theobroma cacao]		
Niben101Scf00272g10005.1	sp|Q9SS60|PP210_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06128g00004.1	sp|O75533|SF3B1_HUMAN	***-	Splicing factor 3B subunit 1	IPR015016 (Splicing factor 3B subunit 1), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf11443g00004.1	emb|CDY72343.1|	--*-	BnaAnng40760D [Brassica napus]		
Niben101Scf02078g08046.1			Unknown protein		
Niben101Scf27837g00005.1	AT5G51150.1	***-	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein LENGTH=531		
Niben101Scf05329g05016.1	gb|AES99701.2|	***-	transcription factor bHLH93-like protein [Medicago truncatula]	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf10157g01010.1			Unknown protein		
Niben101Scf02595g02011.1	gb|AES73140.2|	*-*-	BEACH domain LvsC-like protein, putative [Medicago truncatula]		
Niben101Scf03390g09001.1	sp|Q5HNW7|DNAJ_STAEQ	***-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf04339g06012.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02807g10009.1	gb|AES65140.2|	--*-	VQ motif protein [Medicago truncatula]	IPR008889 (VQ)	
Niben101Scf02360g03003.1	sp|A4YVM3|CLPX_BRASO	****	ATP-dependent Clp protease ATP-binding subunit ClpX	IPR003959 (ATPase, AAA-type, core), IPR004487 (Clp protease, ATP-binding subunit ClpX), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf03338g00004.1	AT1G09960.1	****	sucrose transporter 4 LENGTH=510	IPR005989 (Sucrose/H+ symporter, plant), IPR020846 (Major facilitator superfamily domain)	GO:0005887 (integral component of plasma membrane), GO:0008515 (sucrose transmembrane transporter activity), GO:0015770 (sucrose transport)
Niben101Scf01505g02020.1	sp|P93042|RHD3_ARATH	*-*-	Protein ROOT HAIR DEFECTIVE 3	IPR008803 (RHD3/Sey1)	
Niben101Scf13227g00026.1	sp|Q56254|RPOM_THECE	****	DNA-directed RNA polymerase subunit M	IPR001222 (Zinc finger, TFIIS-type), IPR001529 (DNA-directed RNA polymerase, M/15kDa subunit), IPR012164 (DNA-directed RNA polymerase, subunit C11/M/9)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf16119g00003.1	sp|Q9LNU6|PPR53_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf05977g01006.1	AT1G12480.1	****	C4-dicarboxylate transporter/malic acid transport protein LENGTH=556	IPR004695 (Voltage-dependent anion channel)	GO:0006873 (cellular ion homeostasis), GO:0008308 (voltage-gated anion channel activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01051g10024.1	AT4G12050.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=339	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf09112g03002.1	AT5G65340.1	***-	Protein of unknown function, DUF617 LENGTH=253	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf02176g00001.1	sp|Q9SUH6|PP341_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04727g00001.1			Unknown protein		
Niben101Scf00159g01002.1	sp|Q9SHZ3|NAT1_ARATH	****	Nucleobase-ascorbate transporter 1	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02093g04005.1	sp|Q8IYF3|TEX11_HUMAN	*-*-	Testis-expressed sequence 11 protein	IPR013940 (Meiosis specific protein SPO22)	GO:0005515 (protein binding)
Niben101Scf08193g00009.1	AT5G45360.1	***-	F-box family protein LENGTH=316	IPR004289 (Herpesvirus UL92)	
Niben101Scf03417g03001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07381g02007.1	sp|Q06967|14336_ORYSJ	***-	14-3-3-like protein GF14-F	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf00572g00011.1	gb|EGD03762.1|	--*-	peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase [Burkholderia sp. TJI49]	IPR005079 (Peptidase C45)	
Niben101Scf04407g02005.1	sp|Q9FM19|HIR1_ARATH	***-	Hypersensitive-induced response protein 1	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf00311g00003.1	sp|A8G3V0|GLGB_PROM2	*-*-	1,4-alpha-glucan branching enzyme GlgB	IPR013780 (Glycosyl hydrolase, family 13, all-beta), IPR015902 (Glycoside hydrolase, family 13), IPR017853 (Glycoside hydrolase superfamily)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0043169 (cation binding)
Niben101Scf16898g00001.1	sp|Q9TL08|CHLI_NEPOL	****	Magnesium-chelatase subunit ChlI	IPR011775 (Magnesium chelatase, ATPase subunit I), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006779 (porphyrin-containing compound biosynthetic process), GO:0015979 (photosynthesis), GO:0015995 (chlorophyll biosynthetic process), GO:0016851 (magnesium chelatase activity)
Niben101Scf01269g02001.1	emb|CDX89285.1|	*-*-	BnaA01g16080D [Brassica napus]		
Niben101Scf02406g04007.1	AT3G50440.1	***-	methyl esterase 10 LENGTH=288	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04077g03003.1			Unknown protein		
Niben101Scf02312g01005.1	sp|F4JWS8|QCR72_ARATH	****	Cytochrome b-c1 complex subunit 7-2	IPR003197 (Cytochrome b-c1 complex subunit 7)	GO:0005750 (mitochondrial respiratory chain complex III), GO:0006122 (mitochondrial electron transport, ubiquinol to cytochrome c)
Niben101Scf08034g00002.1	sp|Q96KR6|F210B_HUMAN	--*-	Protein FAM210B	IPR009688 (Domain of unknown function DUF1279)	
Niben101Scf07123g01020.1	sp|Q9C9H7|RLP12_ARATH	*-*-	Receptor-like protein 12	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02522g01013.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf06113g00018.1	AT1G11480.1	***-	eukaryotic translation initiation factor-related LENGTH=578		
Niben101Scf05349g02012.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05416g00009.1	sp|Q9ZQ89|UPS2_ARATH	***-	Ureide permease 2	IPR009834 (Ureide permease)	GO:0016021 (integral component of membrane), GO:0071705 (nitrogen compound transport)
Niben101Scf14012g00004.1	emb|CDY65979.1|	--*-	BnaCnng49210D [Brassica napus]		
Niben101Scf01728g00004.1	sp|A7FD67|HEM3_YERP3	***-	Porphobilinogen deaminase	IPR000860 (Tetrapyrrole biosynthesis, hydroxymethylbilane synthase)	GO:0004418 (hydroxymethylbilane synthase activity), GO:0018160 (peptidyl-pyrromethane cofactor linkage), GO:0033014 (tetrapyrrole biosynthetic process)
Niben101Scf05697g02014.1	gb|AIU50885.1|	***-	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein, partial [Zea mays]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf02513g00006.1	sp|O82013|HSP21_SOLPE	***-	17.3 kDa class II heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf02001g02003.1	gb|AES59710.2|	***-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf02275g03001.1	sp|O14463|TRX1_SCHPO	*-*-	Thioredoxin-1	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf07365g01037.1	AT1G58290.1	****	Glutamyl-tRNA reductase family protein LENGTH=543	IPR000343 (Tetrapyrrole biosynthesis, glutamyl-tRNA reductase), IPR016040 (NAD(P)-binding domain)	GO:0008883 (glutamyl-tRNA reductase activity), GO:0033014 (tetrapyrrole biosynthetic process), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02294g01003.1	AT1G51580.1	****	RNA-binding KH domain-containing protein LENGTH=621	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf25598g01004.1	sp|P46690|GASA4_ARATH	***-	Gibberellin-regulated protein 4	IPR003854 (Gibberellin regulated protein)	
Niben101Scf02264g06020.1	emb|CDX95671.1|	*-*-	BnaC03g25520D [Brassica napus]		
Niben101Scf11383g00019.1	sp|Q43317|CYSK_CITLA	****	Cysteine synthase	IPR005856 (Cysteine synthase K/M)	GO:0004124 (cysteine synthase activity), GO:0006535 (cysteine biosynthetic process from serine)
Niben101Scf00397g01009.1	sp|O49743|GATA4_ARATH	****	GATA transcription factor 4	IPR016679 (Transcription factor, GATA, plant)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding), GO:0045893 (positive regulation of transcription, DNA-templated)
Niben101Scf04779g01029.1	AT4G12520.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=129	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf06919g00014.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf13146g00005.1	AT3G17840.1	*-**	receptor-like kinase 902 LENGTH=647	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01188g03006.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06091g04007.1	sp|P05100|3MG1_ECOLI	****	DNA-3-methyladenine glycosylase 1	IPR005019 (Methyladenine glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0008725 (DNA-3-methyladenine glycosylase activity)
Niben101Scf03282g07004.1	sp|Q9Z615|FENR_BUCAP	--**	Ferredoxin--NADP reductase	IPR001433 (Oxidoreductase FAD/NAD(P)-binding), IPR015701 (Ferredoxin--NADP reductase), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00781g05002.1			Unknown protein		
Niben101Scf00861g02013.1	sp|Q11180|WHT1_CAEEL	****	ABC transporter ATP-binding protein/permease wht-1	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00862g02030.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03768g00006.1	sp|Q9Z0V7|TI17B_MOUSE	--*-	Mitochondrial import inner membrane translocase subunit Tim17-B	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24), IPR013761 (Sterile alpha motif/pointed domain)	
Niben101Scf03694g03005.1	AT1G61740.1	*-*-	Sulfite exporter TauE/SafE family protein LENGTH=458	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf08134g02008.1	sp|Q94C77|RPKL_ARATH	****	Receptor protein kinase-like protein	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07030g01003.1	ref|XP_002533735.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF28647.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf14282g00009.1	sp|Q8EBH1|G6PI_SHEON	****	Glucose-6-phosphate isomerase	IPR001672 (Phosphoglucose isomerase (PGI))	GO:0004347 (glucose-6-phosphate isomerase activity), GO:0006094 (gluconeogenesis), GO:0006096 (glycolytic process)
Niben101Scf11689g03006.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05880g03001.1	AT5G10240.1	****	asparagine synthetase 3 LENGTH=578	IPR006426 (Asparagine synthase, glutamine-hydrolyzing), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004066 (asparagine synthase (glutamine-hydrolyzing) activity), GO:0006529 (asparagine biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf00073g06020.1	sp|Q9PTJ6|CTDSL_CHICK	*-**	CTD small phosphatase-like protein	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding), GO:0016791 (phosphatase activity)
Niben101Scf02502g06012.1	AT2G39210.1	*-*-	Major facilitator superfamily protein LENGTH=601	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01237g02001.1	sp|P49961|ENTP1_HUMAN	***-	Ectonucleoside triphosphate diphosphohydrolase 1	IPR000407 (Nucleoside phosphatase GDA1/CD39)	GO:0016787 (hydrolase activity)
Niben101Scf06603g01009.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00254g08001.1	AT4G23470.1	*-*-	PLAC8 family protein LENGTH=255		
Niben101Scf05049g00003.1	sp|P0CR79|HSE1_CRYNB	*-*-	Class E vacuolar protein-sorting machinery protein HSE1	IPR008942 (ENTH/VHS)	GO:0006886 (intracellular protein transport)
Niben101Scf00108g06002.1	AT5G53750.1	***-	CBS domain-containing protein LENGTH=408		
Niben101Scf03049g02001.1	sp|Q6NPP4|CMTA2_ARATH	*-**	Calmodulin-binding transcription activator 2	IPR005559 (CG-1 DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf13741g00007.1	AT5G45030.1	***-	Trypsin family protein LENGTH=607	IPR012985 (Peptidase S64, Ssy5)	GO:0003824 (catalytic activity)
Niben101Scf01295g05008.1	sp|Q6NPN3|C3H58_ARATH	***-	Zinc finger CCCH domain-containing protein 58	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf07223g03016.1	sp|Q8GXF8|SHGR9_ARATH	***-	E3 ubiquitin-protein ligase SGR9, amyloplastic		
Niben101Scf07267g03001.1	dbj|BAB09401.1|	****	transmembrane transport protein-like [Arabidopsis thaliana]	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0005345 (purine nucleobase transmembrane transporter activity), GO:0006810 (transport), GO:0006863 (purine nucleobase transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00854g01015.1	sp|Q0G9Q1|YCF2_DAUCA	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf05468g01003.1	sp|P59199|DPO1_STRPN	--**	DNA polymerase I	IPR020045 (5'-3' exonuclease, C-terminal domain)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity)
Niben101Scf04713g01005.1			Unknown protein		
Niben101Scf00854g05002.1			Unknown protein		
Niben101Scf28763g00006.1	sp|Q42430|ZFP1_WHEAT	***-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf06423g01011.1	AT5G50740.3	****	Heavy metal transport/detoxification superfamily protein LENGTH=290	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf05997g00028.1	sp|O14647|CHD2_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 2	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf05932g03003.1	sp|Q6I544|GL52_ORYSJ	*-*-	Germin-like protein 5-1	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf00393g02003.1	gb|KEH25572.1|	***-	HSP20-like chaperone superfamily protein [Medicago truncatula]	IPR008978 (HSP20-like chaperone)	
Niben101Scf00663g02007.1	sp|B8LVD6|UTP25_TALSN	***-	U3 small nucleolar RNA-associated protein 25	IPR010678 (Digestive organ expansion factor, predicted)	GO:0005634 (nucleus)
Niben101Scf08670g00034.1	sp|Q9FJ41|GDL85_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf01987g00002.1	gb|AES64486.2|	*-*-	F-box protein interaction domain protein [Medicago truncatula]		
Niben101Scf01571g04005.1	sp|O04379|AGO1_ARATH	*-*-	Protein argonaute 1		
Niben101Scf07663g03007.1	sp|P93003|TFL1_ARATH	***-	Protein TERMINAL FLOWER 1	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf03069g01016.1	gb|ACE79435.1|	*-*-	NBS-coding resistance gene analog [Nicotiana tabacum]	IPR002182 (NB-ARC), IPR021929 (Late blight resistance protein R1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00853g02014.1	AT4G37650.1	****	GRAS family transcription factor LENGTH=531	IPR005202 (Transcription factor GRAS), IPR030019 (Protein short-root)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0008356 (asymmetric cell division), GO:0009956 (radial pattern formation), GO:0043565 (sequence-specific DNA binding), GO:0048366 (leaf development)
Niben101Scf02910g01031.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf17635g01022.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00936g00004.1	AT3G24515.1	*-*-	ubiquitin-conjugating enzyme 37 LENGTH=409	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf17834g01014.1	AT4G10360.1	*-*-	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein LENGTH=266	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf08137g05022.1	ref|WP_026436001.1|	*-*-	phosphoesterase [Acidovorax sp. JHL-9]		
Niben101Scf07044g01002.1			Unknown protein		
Niben101Scf09363g00016.1	sp|O64740|SC13B_ARATH	***-	Protein transport protein SEC13 homolog B	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02077g07002.1	gb|KEH44337.1|	*-*-	inactive poly [ADP-ribose] polymerase RCD1 [Medicago truncatula]	IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR022003 (RST domain of plant C-terminal)	GO:0003950 (NAD+ ADP-ribosyltransferase activity)
Niben101Scf06849g00014.1	sp|B1XWB1|NUOK_LEPCP	--**	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf00863g07001.1	emb|CDX98454.1|	***-	BnaC05g39210D [Brassica napus]		
Niben101Scf05884g00004.1	sp|Q5BK48|TTC5_RAT	*-*-	Tetratricopeptide repeat protein 5		
Niben101Scf05227g00010.1	AT2G30400.1	*-*-	ovate family protein 2 LENGTH=320	IPR006458 (Ovate  protein family, C-terminal), IPR025830 (DNA-binding domain, ovate family-like)	GO:0003677 (DNA binding)
Niben101Scf04109g07004.1	gb|AAT66777.2|	*-*-	Late blight resistance protein, putative [Solanum demissum]		
Niben101Scf03306g01010.1	sp|Q6L1M5|SYM_PICTO	****	Methionine--tRNA ligase	IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding), IPR012340 (Nucleic acid-binding, OB-fold), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR015413 (Methionyl/Leucyl tRNA synthetase), IPR029038 (Methionyl-tRNA synthetase, Zn-domain)	GO:0000049 (tRNA binding), GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004825 (methionine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006431 (methionyl-tRNA aminoacylation)
Niben101Scf12076g00013.1	AT5G12170.2	***-	CRT (chloroquine-resistance transporter)-like transporter 3 LENGTH=452	IPR013936 (Chloroquine resistance transporter-related)	
Niben101Scf07894g00004.1	ref|XP_002302027.2|	--*-	isoflavone reductase family protein [Populus trichocarpa] gb|EEE81300.2| isoflavone reductase family protein [Populus trichocarpa]		
Niben101Scf00683g02006.1	AT3G17840.1	*-*-	receptor-like kinase 902 LENGTH=647	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08206g02024.1	AT3G56760.1	****	Protein kinase superfamily protein LENGTH=577	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00683g00003.1	AT4G26640.2	****	WRKY family transcription factor family protein LENGTH=557	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04294g03012.1			Unknown protein		
Niben101Scf10749g02003.1	sp|P56330|SUI1_MAIZE	****	Protein translation factor SUI1 homolog	IPR005874 (Eukaryotic translation initiation factor SUI1)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf08857g00002.1			Unknown protein		
Niben101Scf02581g02001.1	sp|P56820|EIF3D_ARATH	****	Eukaryotic translation initiation factor 3 subunit D	IPR007783 (Eukaryotic translation initiation factor 3 subunit D)	GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf01463g07007.1	AT5G57580.1	*-*-	Calmodulin-binding protein LENGTH=647	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf03628g08011.1	emb|CDY10775.1|	***-	BnaA05g11610D [Brassica napus]		
Niben101Scf12967g00001.1	AT2G41870.1	***-	Remorin family protein LENGTH=274	IPR005516 (Remorin, C-terminal)	
Niben101Scf01534g00018.1	AT2G01290.1	****	ribose-5-phosphate isomerase 2 LENGTH=265	IPR004788 (Ribose 5-phosphate isomerase, type A)	GO:0004751 (ribose-5-phosphate isomerase activity), GO:0009052 (pentose-phosphate shunt, non-oxidative branch)
Niben101Scf00987g04007.1	sp|Q8NA42|ZN383_HUMAN	--*-	Zinc finger protein 383		
Niben101Scf04951g02010.1	sp|Q6TNT2|ANR46_DANRE	--*-	Ankyrin repeat domain-containing protein 46	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf13942g00022.1	sp|Q8LHP0|ELOF1_ORYSJ	***-	Transcription elongation factor 1 homolog	IPR007808 (Transcription elongation factor 1)	
Niben101Scf01573g00004.1	AT3G14180.1	*-*-	sequence-specific DNA binding transcription factors LENGTH=443		
Niben101Scf03945g00015.1	sp|Q5VRJ8|PX115_ORYSJ	****	Peroxisomal membrane protein 11-5	IPR008733 (Peroxisomal biogenesis factor 11)	GO:0005779 (integral component of peroxisomal membrane), GO:0016559 (peroxisome fission)
Niben101Scf21770g00005.1	AT4G03090.1	****	sequence-specific DNA binding;sequence-specific DNA binding transcription factors LENGTH=913	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf09517g02005.1	emb|CDY04229.1|	***-	BnaC06g25860D [Brassica napus]		
Niben101Scf06736g04003.1	sp|Q55G16|RN113_DICDI	*-*-	RING finger protein 113 homolog	IPR000571 (Zinc finger, CCCH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf33689g00006.1	AT4G34350.1	****	4-hydroxy-3-methylbut-2-enyl diphosphate reductase LENGTH=466	IPR003451 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase)	GO:0019288 (isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway), GO:0046872 (metal ion binding), GO:0050992 (dimethylallyl diphosphate biosynthetic process), GO:0051745 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity)
Niben101Scf00089g02006.1	AT2G28510.1	****	Dof-type zinc finger DNA-binding family protein LENGTH=288	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11288g00015.1	AT1G17580.1	****	myosin 1 LENGTH=1520	IPR000048 (IQ motif, EF-hand binding site), IPR002710 (Dilute), IPR004009 (Myosin, N-terminal, SH3-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf02508g06002.1			Unknown protein		
Niben101Scf15490g00005.1	gb|KEH30357.1|	*-*-	clast3, related protein [Medicago truncatula]		
Niben101Scf05226g05016.1	sp|P43157|CYSP_SCHJA	*-**	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf09087g01016.1	sp|Q9SJ24|EC12_ARATH	***-	Egg cell-secreted protein 1.2	IPR008502 (Prolamin-like domain)	
Niben101Scf01634g03016.1	AT5G04000.2	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl. LENGTH=118		
Niben101Scf16678g00013.1	sp|Q9SFX2|PUB43_ARATH	***-	U-box domain-containing protein 43	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf10169g04006.1	AT2G40280.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=589	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR006041 (Pollen Ole e 1 allergen/extensin), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf05060g08014.1	sp|P0DI44|CASP1_SOLTU	***-	Casparian strip membrane protein 1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf03963g02019.1	sp|Q96JG6|CC132_HUMAN	***-	Coiled-coil domain-containing protein 132	IPR019514 (Protein of unknown function DUF2451, C-terminal), IPR019515 (Vacuolar protein sorting-associated protein 54)	
Niben101Scf16197g01001.1	sp|Q9FZ95|PUP3_ARATH	***-	Purine permease 3	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf03941g03007.1			Unknown protein		
Niben101Scf00372g03026.1	sp|Q9FHB0|Y5014_ARATH	*-*-	B3 domain-containing protein	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf00780g02005.1	sp|Q9A1Q2|VATB_STRP1	****	V-type ATP synthase beta chain	IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR022879 (V-type ATP synthase regulatory subunit B/beta), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0015992 (proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0033180 (proton-transporting V-type ATPase, V1 domain), GO:0046034 (ATP metabolic process)
Niben101Scf02789g01006.1			Unknown protein		
Niben101Scf05678g02016.1	sp|Q9SBV6|CYCLD_ANTML	*-*-	Transcription factor CYCLOIDEA	IPR005333 (Transcription factor, TCP)	
Niben101Scf03388g00007.1			Unknown protein		
Niben101Scf13162g00005.1	emb|CDY03857.1|	***-	BnaC07g10820D [Brassica napus]		
Niben101Scf06016g02003.1	sp|O04722|SUT21_ARATH	****	Sulfate transporter 2.1	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf28901g00001.1	ref|XP_001733974.1|	--*-	replication protein A 70 kDa DNA-binding subunit [Entamoeba dispar SAW760] gb|EDR29890.1| replication protein A 70 kDa DNA-binding subunit, putative [Entamoeba dispar SAW760]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf01612g02013.1	tpg|DAA55902.1|	--*-	TPA: hypothetical protein ZEAMMB73_061725 [Zea mays]		
Niben101Scf01765g02012.1	sp|P12424|GLNA_NICPL	****	Glutamine synthetase	IPR008147 (Glutamine synthetase, beta-Grasp), IPR014746 (Glutamine synthetase/guanido kinase, catalytic domain), IPR027302 (Glutamine synthetase, N-terminal conserved site), IPR027303 (Glutamine synthetase, glycine-rich site)	GO:0003824 (catalytic activity), GO:0004356 (glutamate-ammonia ligase activity), GO:0006542 (glutamine biosynthetic process), GO:0006807 (nitrogen compound metabolic process)
Niben101Scf00725g02001.1	sp|Q9LS42|CASP_ARATH	*-*-	Protein CASP		
Niben101Scf01517g08010.1	sp|B5FUN9|ZNTB_SALDC	--**	Zinc transport protein ZntB	IPR002523 (Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf16258g00001.1	ref|XP_003636803.1|	*-**	Myb family transcription factor APL [Medicago truncatula] gb|KEH36603.1| myb-like DNA-binding domain, shaqkyf class protein [Medicago truncatula]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01052g09001.1	sp|Q8R8I6|ATKB_CALS4	*-**	Potassium-transporting ATPase B chain	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0006812 (cation transport), GO:0016021 (integral component of membrane), GO:0019829 (cation-transporting ATPase activity), GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf02752g02003.1	sp|Q9MA55|ACBP4_ARATH	*-**	Acyl-CoA-binding domain-containing protein 4	IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf03460g05015.1	sp|Q969H6|POP5_HUMAN	-***	Ribonuclease P/MRP protein subunit POP5	IPR002759 (Ribonuclease P/MRP protein subunit)	GO:0004540 (ribonuclease activity), GO:0008033 (tRNA processing)
Niben101Scf03712g01020.1	AT5G23310.1	****	Fe superoxide dismutase 3 LENGTH=263	IPR001189 (Manganese/iron superoxide dismutase)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01146g09031.1	sp|O49323|CSLD1_ARATH	****	Cellulose synthase-like protein D1	IPR005150 (Cellulose synthase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf10557g00002.1	sp|Q03W55|RNZ_LEUMM	***-	Ribonuclease Z	IPR001279 (Beta-lactamase-like)	
Niben101Scf00819g08010.1	sp|Q9LYM3|LOR14_ARATH	***-	Protein LURP-one-related 14	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf06916g00002.1	AT2G17700.1	*-**	ACT-like protein tyrosine kinase family protein LENGTH=546	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06423g03027.1	AT3G59660.1	***-	C2 domain-containing protein / GRAM domain-containing protein LENGTH=594	IPR000008 (C2 domain), IPR004182 (GRAM domain)	GO:0005515 (protein binding)
Niben101Scf04500g01017.1	sp|Q6NKW9|E138_ARATH	***-	Glucan endo-1,3-beta-glucosidase 8	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06218g07013.1	sp|O50016|AP2S1_MAIZE	*-*-	AP-2 complex subunit sigma	IPR016635 (Adaptor protein complex, sigma subunit)	GO:0006810 (transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport)
Niben101Scf03169g08015.1	AT4G35160.1	****	O-methyltransferase family protein LENGTH=382	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf05472g00001.1	AT5G54830.1	***-	DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein LENGTH=907	IPR002541 (Cytochrome c assembly protein), IPR005018 (DOMON domain), IPR006593 (Cytochrome b561/ferric reductase transmembrane), IPR019545 (DM13 domain)	GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf01188g08017.1	gb|KEH44550.1|	***-	DEAD-box helicase family protein [Medicago truncatula]		
Niben101Scf18484g00004.1	sp|Q8BUM9|UBP43_MOUSE	*-**	Ubiquitin carboxyl-terminal hydrolase 43	IPR006615 (Peptidase C19, ubiquitin-specific peptidase, DUSP domain), IPR028889 (Ubiquitin specific protease domain)	GO:0004843 (ubiquitin-specific protease activity), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf02042g03021.1	emb|CAJ53850.1|	*-*-	luminidependens [Arabidopsis thaliana]	IPR009057 (Homeodomain-like), IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf00963g01022.1	sp|Q9ASR4|BCAL2_ARATH	***-	Branched-chain-amino-acid aminotransferase-like protein 2	IPR001544 (Aminotransferase, class IV), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf10142g00008.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02294g02003.1			Unknown protein		
Niben101Scf04861g01012.1	sp|O65685|BLH6_ARATH	***-	BEL1-like homeodomain protein 6	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01060g01007.1	sp|P29375|KDM5A_HUMAN	*-*-	Lysine-specific demethylase 5A	IPR003347 (JmjC domain), IPR003349 (JmjN domain), IPR003888 (FY-rich, N-terminal), IPR003889 (FY-rich, C-terminal), IPR004198 (Zinc finger, C5HC2-type)	GO:0005634 (nucleus)
Niben101Scf30947g00001.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf08419g00008.1	sp|Q9ZR39|U2A2A_NICPL	*-*-	Splicing factor U2af large subunit A	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07748g02005.1			Unknown protein		
Niben101Scf05188g03030.1	sp|Q9HFX1|G3P_AJECA	***-	Glyceraldehyde-3-phosphate dehydrogenase	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf01623g06025.1	sp|Q9SRW9|CSLD5_ARATH	****	Cellulose synthase-like protein D5	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf01831g01004.1	sp|Q9FSG7|TP1A_MALDO	***-	Thaumatin-like protein 1a	IPR001938 (Thaumatin)	
Niben101Scf00174g00034.1			Unknown protein		
Niben101Scf08721g01025.1	sp|A1VZT4|SECA_CAMJJ	--*-	Protein translocase subunit SecA	IPR004027 (SEC-C motif)	
Niben101Scf01045g00022.1	AT1G26360.1	*-*-	methyl esterase 13 LENGTH=444	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07488g01009.1	AT4G03420.1	***-	Protein of unknown function (DUF789) LENGTH=310	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf00448g21002.1			Unknown protein		
Niben101Scf03325g01001.1	emb|CDY44680.1|	***-	BnaA05g29260D [Brassica napus]		
Niben101Scf04096g12002.1	AT4G00750.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=633	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf03018g20005.1			Unknown protein		
Niben101Scf25359g00004.1	sp|P77966|GYRB_SYNY3	*-**	DNA gyrase subunit B	IPR000565 (DNA topoisomerase, type IIA, subunit B)	GO:0003677 (DNA binding), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0006265 (DNA topological change)
Niben101Scf03852g00024.1	sp|Q8W4H1|GAT26_ARATH	****	GATA transcription factor 26	IPR013088 (Zinc finger, NHR/GATA-type), IPR028020 (ASX homology domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02623g00005.1	AT4G18060.1	*-*-	SH3 domain-containing protein LENGTH=351		
Niben101Scf23821g00013.1	sp|P16924|P4HA1_CHICK	*-*-	Prolyl 4-hydroxylase subunit alpha-1	IPR003582 (ShKT domain), IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10974g00001.1	AT5G62260.1	*-*-	AT hook motif DNA-binding family protein LENGTH=404	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf01247g02002.1	emb|CDX73444.1|	***-	BnaC08g25590D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant), IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf31796g00003.1	tpg|DAA62158.1|	***-	TPA: hypothetical protein ZEAMMB73_942245 [Zea mays]		
Niben101Scf03907g02008.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf04339g00010.1	sp|Q5ZI57|TPPC3_CHICK	***-	Trafficking protein particle complex subunit 3	IPR007194 (Transport protein particle (TRAPP) component), IPR024096 (NO signalling/Golgi transport  ligand-binding domain)	
Niben101Scf07573g00003.1	ref|XP_003615152.1|	****	2-dehydro-3-deoxyphosphoheptonate aldolase (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase) [Medicago truncatula] gb|AES98110.1| phospho-2-dehydro-3-deoxyheptonate aldolase [Medicago truncatula]	IPR002480 (DAHP synthetase, class II)	GO:0003849 (3-deoxy-7-phosphoheptulonate synthase activity), GO:0009073 (aromatic amino acid family biosynthetic process)
Niben101Scf00603g02001.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02514g00002.1			Unknown protein		
Niben101Scf07147g02006.1	sp|A8IMG3|RL28_AZOC5	--*-	50S ribosomal protein L28	IPR001383 (Ribosomal protein L28), IPR026569 (Ribosomal protein L28/L24)	
Niben101Scf08333g05001.1	sp|Q9M1K1|ORG2_ARATH	***-	Transcription factor ORG2	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf25430g00005.1	sp|Q54FE8|RPA49_DICDI	****	DNA-directed RNA polymerase I subunit rpa49	IPR009668 (RNA polymerase I associated factor, A49-like)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf05972g02009.1	sp|D7T737|MTND1_VITVI	****	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1	IPR004313 (Acireductone dioxygenase ARD family)	GO:0010309 (acireductone dioxygenase [iron(II)-requiring] activity), GO:0016491 (oxidoreductase activity), GO:0019509 (L-methionine biosynthetic process from methylthioadenosine), GO:0055114 (oxidation-reduction process)
Niben101Scf03031g04008.1	sp|Q55721|FBT_SYNY3	***-	Folate-biopterin transporter	IPR004324 (Folate-biopterin transporter), IPR020846 (Major facilitator superfamily domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf05319g05007.1	AT3G06130.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=473	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf04505g04005.1	sp|O27125|RPOA1_METTH	--**	DNA-directed RNA polymerase subunit A'	IPR015699 (DNA-directed RNA pol I, largest subunit)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf03171g03011.1	sp|Q2MIH6|YCF4_SOLBU	*-**	Photosystem I assembly protein Ycf4	IPR003359 (Photosystem I Ycf4, assembly)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf05391g01001.1	emb|CDX94630.1|	*-*-	BnaC07g10280D [Brassica napus]		
Niben101Scf05057g06006.1	sp|Q9JI38|PUS3_MOUSE	*-**	tRNA pseudouridine(38/39) synthase	IPR001406 (Pseudouridine synthase I, TruA), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf00458g00001.1	sp|Q5ZML3|SRSF1_CHICK	*-*-	Serine/arginine-rich splicing factor 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02006g03002.1	sp|Q08DS0|KLH21_BOVIN	*-*-	Kelch-like protein 21	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf33352g00001.1	sp|A3LQ01|DED1_PICST	****	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01983g16028.1	AT3G14860.2	***-	NHL domain-containing protein LENGTH=493	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0005515 (protein binding)
Niben101Scf05730g00002.1	AT4G03230.1	*-*-	S-locus lectin protein kinase family protein LENGTH=1010	IPR003609 (Apple-like)	
Niben101Scf15836g01010.1	sp|Q680Q4|SIZ1_ARATH	***-	E3 SUMO-protein ligase SIZ1	IPR003034 (SAP domain), IPR004181 (Zinc finger, MIZ-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf03886g02010.1	sp|P0A0A1|ODPB_STAAM	****	Pyruvate dehydrogenase E1 component subunit beta	IPR005475 (Transketolase-like, pyrimidine-binding domain), IPR005476 (Transketolase, C-terminal), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR027110 (Pyruvate dehydrogenase E1 component subunit beta), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0004739 (pyruvate dehydrogenase (acetyl-transferring) activity), GO:0006086 (acetyl-CoA biosynthetic process from pyruvate), GO:0008152 (metabolic process)
Niben101Scf01375g04003.1	emb|CDY38196.1|	***-	BnaA09g11930D [Brassica napus]		
Niben101Scf09951g00013.1	emb|CAH67653.1|	*-*-	[Oryza sativa Indica Group]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf02631g01017.1	AT2G15560.1	***-	Putative endonuclease or glycosyl hydrolase LENGTH=489	IPR024768 (Meiosis arrest female protein 1), IPR025605 (OST-HTH/LOTUS domain), IPR029060 (PIN domain-like)	GO:0005777 (peroxisome), GO:0010468 (regulation of gene expression)
Niben101Scf04083g01022.1	sp|B8ZPW5|GLGA_STRPJ	****	Glycogen synthase	IPR011835 (Glycogen/starch synthase, ADP-glucose type)	GO:0009011 (starch synthase activity), GO:0009058 (biosynthetic process), GO:0009250 (glucan biosynthetic process)
Niben101Scf06275g03004.1	sp|P32026|DEF_TOBAC	***-	Defensin-like protein	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf00854g06053.1			Unknown protein		
Niben101Scf00577g11004.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01276g03007.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03064g00005.1	ref|XP_003590810.1|	***-	Tetratricopeptide repeat protein 7B [Medicago truncatula] gb|AES61061.1| TPR 7B-like protein [Medicago truncatula]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06467g07007.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00854g11093.1	ref|XP_002536345.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF26037.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11215g00010.1	sp|Q9Y6U7|RN215_HUMAN	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf22688g00018.1	sp|P83526|FER_TOBAC	*-*-	Ferredoxin	IPR004240 (Nonaspanin (TM9SF)), IPR010241 (Ferredoxin [2Fe-2S], plant), IPR012675 (Beta-grasp domain), IPR020846 (Major facilitator superfamily domain)	GO:0009055 (electron carrier activity), GO:0016021 (integral component of membrane), GO:0022900 (electron transport chain), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf03106g01010.1	sp|P21873|ODPA_GEOSE	****	Pyruvate dehydrogenase E1 component subunit alpha	IPR017597 (Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y), IPR029061 (Thiamin diphosphate-binding fold)	GO:0004739 (pyruvate dehydrogenase (acetyl-transferring) activity), GO:0006096 (glycolytic process), GO:0008152 (metabolic process), GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor), GO:0043231 (intracellular membrane-bounded organelle), GO:0055114 (oxidation-reduction process)
Niben101Scf01538g05001.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09665g01004.1	sp|Q6NKQ9|CRR15_ARATH	***-	Cysteine-rich repeat secretory protein 15	IPR002902 (Gnk2-homologous domain)	
Niben101Ctg14686g00002.1	emb|CDY37195.1|	***-	BnaC02g35030D [Brassica napus]		
Niben101Scf01518g03005.1			Unknown protein		
Niben101Scf06976g01001.1	AT1G80700.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=214		
Niben101Scf03284g03006.1	sp|Q9ZPX1|ARF5_ARATH	*-*-	ADP-ribosylation factor-like protein 2	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf03287g00004.1	sp|Q0WPZ6|PP158_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03502g00006.1	sp|Q67YT8|RUS4_ARATH	***-	Protein root UVB sensitive 4	IPR006968 (Root UVB sensitive family)	
Niben101Scf00466g04005.1	sp|Q8CCF0|PRP31_MOUSE	***-	U4/U6 small nuclear ribonucleoprotein Prp31	IPR002687 (Nop domain), IPR012976 (NOSIC), IPR019175 (Prp31 C-terminal), IPR027105 (U4/U6 small nuclear ribonucleoprotein Prp31)	GO:0000244 (spliceosomal tri-snRNP complex assembly), GO:0000398 (mRNA splicing, via spliceosome), GO:0046540 (U4/U6 x U5 tri-snRNP complex)
Niben101Scf09825g00016.1	sp|Q9ZUH1|Y2424_ARATH	*-*-	BTB/POZ domain-containing protein		
Niben101Scf05146g05002.1	sp|Q8LC03|ATB13_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-13	IPR002913 (START domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008289 (lipid binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04424g04012.1	sp|Q9H6Z4|RANB3_HUMAN	*-**	Ran-binding protein 3	IPR011993 (Pleckstrin homology-like domain), IPR015007 (Nuclear pore complex, NUP2/50/61)	GO:0005643 (nuclear pore), GO:0046907 (intracellular transport)
Niben101Scf02828g01009.1	AT3G06630.1	*-**	protein kinase family protein LENGTH=671	IPR011009 (Protein kinase-like domain), IPR020683 (Ankyrin repeat-containing domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07015g00010.1	AT1G32580.1	***-	plastid developmental protein DAG, putative LENGTH=229		
Niben101Scf03676g04015.1	ref|NP_004308.2|	****	ATPase ASNA1 [Homo sapiens] ref|NP_001092334.1| ATPase ASNA1 [B product [Homo sapiens] tpg|DAA28025.1| TPA: arsA arsenite transporter, ATP-binding, homolog 1 [Bos taurus] gb|ADZ15365.1| arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) [synthetic construct] gb|EHH29684.1| ATPase ASNA1 [Macaca mulatta] gb|EHH59253.1| ATPase ASNA1 [Macaca fascicularis] gb|ELK06712.1| ATPase ASNA1 [Pteropus alecto] gb|ELR52911.1| ATPase ASNA1 [Bos mutus] gb|AHJ25817.1| arsa arsenite transporter ATP-binding [Panthera tigris altaica] gb|AIC48309.1| ASNA1, partial [synthetic construct]	IPR016300 (Arsenical pump ATPase, ArsA/GET3), IPR025723 (Anion-transporting ATPase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf00109g09010.1	AT3G27090.1	***-	DCD (Development and Cell Death) domain protein LENGTH=296	IPR013989 (Development/cell death domain)	
Niben101Scf01082g02013.1	sp|Q9D9H8|CB069_MOUSE	***-	UPF0565 protein C2orf69 homolog	IPR018881 (Uncharacterised protein family UPF0565)	
Niben101Scf07663g00004.1	ref|WP_019857672.1|	***-	iron-sulfur cluster assembly protein HesB [Mesorhizobium loti]	IPR001347 (Sugar isomerase (SIS))	GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf04499g02006.1	gb|AEZ02539.1|	*-*-	shattering 4, partial [Oryza rufipogon]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf02937g06005.1	AT4G14940.1	****	amine oxidase 1 LENGTH=650	IPR000269 (Copper amine oxidase)	GO:0005507 (copper ion binding), GO:0008131 (primary amine oxidase activity), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding), GO:0055114 (oxidation-reduction process)
Niben101Scf33671g00001.1	sp|P97393|RHG05_MOUSE	*-*-	Rho GTPase-activating protein 5	IPR008936 (Rho GTPase activation protein)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf07981g01016.1	AT5G22850.1	*-*-	Eukaryotic aspartyl protease family protein LENGTH=493	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00066g01002.1	ref|NP_001051735.1|	-**-	product [Oryza sativa Japonica Group]		
Niben101Scf04220g05016.1	sp|B2GBQ6|DNAJ_LACF3	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf16608g00003.1	sp|Q8DLP3|ATPA_THEEB	****	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR004100 (ATPase, F1 complex alpha/beta subunit, N-terminal domain), IPR023366 (ATP synthase subunit alpha-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015992 (proton transport), GO:0046034 (ATP metabolic process)
Niben101Scf06397g02009.1	sp|Q8S8T8|PCR10_ARATH	***-	Protein PLANT CADMIUM RESISTANCE 10	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf03842g05004.1	emb|CAE04909.2|	--*-	OSJNBa0082E08.6 [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf02784g00011.1	sp|Q2RJU3|NUOH_MOOTA	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf12959g00003.1	sp|Q9SDW0|TGT3A_ARATH	*-**	Trihelix transcription factor GT-3a	IPR017877 (Myb-like domain), IPR027775 (C2H2- zinc finger protein family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09116g03002.1	AT2G33460.1	*-*-	ROP-interactive CRIB motif-containing protein 1 LENGTH=224	IPR000095 (CRIB domain)	
Niben101Scf01832g00003.1	sp|Q0V7S0|FB39_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00875g12003.1	sp|A0LIH6|EFTU_SYNFM	*-*-	Elongation factor Tu	IPR000795 (Elongation factor, GTP-binding domain), IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0003924 (GTPase activity), GO:0005524 (ATP binding), GO:0005525 (GTP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf02819g04002.1	AT5G32440.3	***-	Ubiquitin system component Cue protein LENGTH=265	IPR009060 (UBA-like), IPR029131 (HAUS augmin-like complex subunit 5)	GO:0005515 (protein binding), GO:0051225 (spindle assembly)
Niben101Scf00350g04011.1	sp|Q9FRL5|ZHD5_ARATH	***-	Zinc-finger homeodomain protein 5	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf00592g00019.1	sp|Q9ZPV8|COAD_ARATH	***-	Phosphopantetheine adenylyltransferase	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process)
Niben101Scf09603g04016.1	sp|Q68X97|HSPC1_RICTY	--*-	Small heat shock protein C1	IPR008978 (HSP20-like chaperone)	
Niben101Scf04040g00015.1	sp|P42423|YXDL_BACSU	--**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf10900g02009.1	sp|Q56XI1|PPR25_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02838g04007.1	ref|XP_007013476.1|	*-*-	Dedicator of cytokinesis protein 6, putative isoform 1 [Theobroma cacao] gb|EOY31095.1| Dedicator of cytokinesis protein 6, putative isoform 1 [Theobroma cacao]		
Niben101Scf05776g01048.1	ref|YP_004927601.1|	--*-	orf310 (mitochondrion) [Brassica carinata] gb|AEH43616.1| orf310 [Brassica carinata]		
Niben101Scf06252g01022.1			Unknown protein		
Niben101Scf04920g01013.1	sp|Q6NQB7|B3GT7_ARATH	*-**	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf04813g02012.1			Unknown protein		
Niben101Scf03934g01018.1	AT2G20330.1	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=648	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf02322g04003.1	sp|Q88894|CAPSD_TRSV	--*-	Capsid protein		
Niben101Scf04037g01004.1	ref|XP_007039412.1|	*-*-	Zinc finger matrin-type protein 1, putative isoform 2 [Theobroma cacao] gb|EOY23913.1| Zinc finger matrin-type protein 1, putative isoform 2 [Theobroma cacao]		
Niben101Scf04422g03014.1	sp|Q8WXF0|SRS12_HUMAN	*-*-	Serine/arginine-rich splicing factor 12	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07509g00009.1	sp|Q7WKG2|AQPZ_BORBR	***-	Aquaporin Z	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02353g06006.1	sp|Q2MIC5|YCF2_SOLBU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf28369g01005.1			Unknown protein		
Niben101Scf15993g00010.1	AT5G62540.1	***-	ubiquitin-conjugating enzyme 3 LENGTH=150	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf02322g04002.1	AT3G28740.1	*-*-	Cytochrome P450 superfamily protein LENGTH=509	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04570g06014.1	ref|NP_001049221.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf32453g00001.1	sp|P41129|RL132_BRANA	***-	60S ribosomal protein L13-2	IPR001380 (Ribosomal protein L13e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02537g14003.1	AT5G09430.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=311	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02107g06001.1	sp|Q54YS0|Y8111_DICDI	*-**	DNA-binding protein DDB_G0278111	IPR002836 (PDCD5-related protein)	GO:0003677 (DNA binding)
Niben101Scf02289g05007.1	ref|XP_003613390.1|	--*-	PttB [Medicago truncatula]		
Niben101Scf02316g00022.1	emb|CAA30522.1|	--*-	ORF 143 [Glycine max]		
Niben101Scf08326g00022.1	gb|KEH35223.1|	*-*-	BZIP transcription factor [Medicago truncatula]		
Niben101Scf11142g00012.1	AT1G18160.1	****	Protein kinase superfamily protein LENGTH=992	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07162g00007.1	AT1G09980.1	***-	Putative serine esterase family protein LENGTH=802	IPR007751 (Domain of unknown function DUF676, lipase-like), IPR022122 (Protein of unknown function DUF3657), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03129g03011.1	AT3G06930.2	****	protein arginine methyltransferase 4B LENGTH=535	IPR025799 (Protein arginine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity)
Niben101Scf15120g01008.1	sp|P29766|RL8_SOLLC	--*-	60S ribosomal protein L8		
Niben101Scf02433g00011.1	sp|Q9FFI5|NAC86_ARATH	***-	NAC domain-containing protein 86	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05433g00004.1	sp|A1TZR8|FADA_MARHV	***-	3-ketoacyl-CoA thiolase	IPR002155 (Thiolase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf06176g04009.1	AT1G35780.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=286	IPR025131 (Domain of unknown function DUF4057)	
Niben101Scf00214g02006.1	AT4G28220.1	***-	NAD(P)H dehydrogenase B1 LENGTH=571	IPR001327 (Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain), IPR011992 (EF-hand domain pair), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0005509 (calcium ion binding), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03417g00008.1	sp|Q5RE95|WDR5B_PONAB	*-*-	WD repeat-containing protein 5B	IPR011990 (Tetratricopeptide-like helical domain), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00051g05021.1	sp|Q922R8|PDIA6_MOUSE	--*-	Protein disulfide-isomerase A6	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf04992g01011.1	sp|Q96299|14339_ARATH	--*-	14-3-3-like protein GF14 mu		
Niben101Scf01052g05009.1	gb|ACM90466.1|	--*-	dissimilatory sulfite reductase [uncultured sulfate-reducing bacterium]		
Niben101Scf11178g01008.1	sp|Q0G9V4|RBL_DAUCA	****	Ribulose bisphosphate carboxylase large chain	IPR000685 (Ribulose bisphosphate carboxylase, large subunit, C-terminal), IPR017443 (Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf00885g02014.1	sp|Q9Z4H7|HTRA_LACHE	*-**	Serine protease Do-like HtrA	IPR001940 (Peptidase S1C), IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity), GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05767g02003.1	sp|O49884|RL30_LUPLU	***-	60S ribosomal protein L30	IPR000231 (Ribosomal protein L30e), IPR022991 (Ribosomal protein L30e, conserved site), IPR029064 (50S ribosomal protein L30e-like)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03403g01034.1	sp|Q9KA05|RNC_BACHD	--**	Ribonuclease 3	IPR011907 (Ribonuclease III)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0016075 (rRNA catabolic process)
Niben101Scf03930g05021.1	gb|KEH42602.1|	-***	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf10743g01006.1			Unknown protein		
Niben101Scf01125g02014.1	AT5G24840.1	****	tRNA (guanine-N-7) methyltransferase LENGTH=251	IPR003358 (tRNA (guanine-N-7) methyltransferase, Trmb type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006400 (tRNA modification), GO:0008176 (tRNA (guanine-N7-)-methyltransferase activity)
Niben101Scf10061g00001.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR015757 (Calcineurin B protein)	GO:0005509 (calcium ion binding)
Niben101Scf01454g00001.1	sp|P27754|RT03_OENBE	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf17691g00005.1	AT2G39690.1	*-*-	Protein of unknown function, DUF547 LENGTH=498	IPR006869 (Domain of unknown function DUF547)	
Niben101Scf11305g01014.1	gb|AES79242.2|	***-	DUF247 domain protein [Medicago truncatula]	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf39265g00002.1	gb|KEH32260.1|	***-	knotted 1-binding protein [Medicago truncatula]		
Niben101Scf01061g08023.1	sp|O48916|FAH1_ARATH	****	Fatty acid 2-hydroxylase 1	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01182g04002.1	ref|XP_003630561.1|	*-*-	Alpha-2,8-sialyltransferase 8B [Medicago truncatula]		
Niben101Scf19148g00006.1	sp|Q9M2H9|MCC26_ARATH	*-*-	MATH domain and coiled-coil domain-containing protein	IPR008974 (TRAF-like)	GO:0005515 (protein binding)
Niben101Scf17719g04005.1	sp|Q9BDY9|RBM4_RABIT	--**	RNA-binding protein 4	IPR007201 (RNA recognition motif 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf11495g00002.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf09513g00019.1	AT2G25760.2	****	Protein kinase family protein LENGTH=676	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf15104g00005.1	sp|Q6D0B8|DNAJ_PECAS	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf05430g00004.1	sp|Q8W191|HYH_ARATH	--**	Transcription factor HY5-like	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf16215g01001.1	AT4G37040.1	****	methionine aminopeptidase 1D LENGTH=350	IPR000994 (Peptidase M24, structural domain), IPR001714 (Peptidase M24, methionine aminopeptidase)	GO:0004177 (aminopeptidase activity), GO:0006508 (proteolysis), GO:0008235 (metalloexopeptidase activity)
Niben101Scf01538g05002.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09710g00031.1	sp|Q135X7|NUOD_RHOPS	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05838g00001.1	AT2G40780.1	***-	Nucleic acid-binding, OB-fold-like protein LENGTH=171	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf02069g01018.1	AT5G41800.1	***-	Transmembrane amino acid transporter family protein LENGTH=452	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf04071g03004.1	ref|XP_007045551.1|	*-*-	S-aden , putative [Theobroma cacao]	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf01983g07005.1			Unknown protein		
Niben101Scf17164g00016.1	sp|P19173|COX5C_IPOBA	***-	Cytochrome c oxidase subunit 5C		
Niben101Scf04989g02002.1	AT4G27480.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=421	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf00712g00002.1	AT4G10465.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=183	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf04539g00001.1	AT4G29480.1	****	Mitochondrial ATP synthase subunit G protein LENGTH=122	IPR006808 (ATPase, F0 complex, subunit G, mitochondrial)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf10384g00013.1	AT1G18640.2	*-*-	3-phosphoserine phosphatase LENGTH=295	IPR023214 (HAD-like domain)	
Niben101Scf05717g00005.1	sp|Q9LSL1|BH093_ARATH	--*-	Transcription factor bHLH93	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf25430g00004.1	sp|P08628|THIO_RABIT	*-*-	Thioredoxin	IPR011990 (Tetratricopeptide-like helical domain), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding), GO:0045454 (cell redox homeostasis)
Niben101Scf09424g06009.1			Unknown protein		
Niben101Scf00593g02002.1	sp|Q944G5|PTR44_ARATH	*-*-	Protein NRT1/ PTR FAMILY 2.10	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02940g00002.1	AT1G70000.1	*-*-	myb-like transcription factor family protein LENGTH=261	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02216g02022.1	sp|P50699|TLPH_ARATH	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf00494g07005.1	gb|KEH43581.1|	*-*-	tRNA nucleotidyltransferase [Medicago truncatula]		
Niben101Scf06734g02025.1			Unknown protein		
Niben101Scf01512g03004.1	sp|Q68VV7|NUOL_RICTY	*-**	NADH-quinone oxidoreductase subunit L	IPR018393 (NADH-plastoquinone oxidoreductase, chain 5 subgroup)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf08011g02005.1	sp|Q949Q0|GPDA2_ARATH	*-*-	Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic		
Niben101Scf08002g03013.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf01066g03001.1	sp|Q9MA41|CTL1_ARATH	****	Chitinase-like protein 1	IPR000726 (Glycoside hydrolase, family 19, catalytic), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0006032 (chitin catabolic process), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf08030g04005.1	sp|A7H574|PANB_CAMJD	****	3-methyl-2-oxobutanoate hydroxymethyltransferase	IPR003700 (Ketopantoate hydroxymethyltransferase)	GO:0003824 (catalytic activity), GO:0003864 (3-methyl-2-oxobutanoate hydroxymethyltransferase activity), GO:0015940 (pantothenate biosynthetic process)
Niben101Scf09157g00014.1			Unknown protein		
Niben101Scf02514g00001.1	sp|Q6AZV7|DDX55_XENLA	--*-	ATP-dependent RNA helicase DDX55		
Niben101Scf02638g03020.1	sp|Q9FFR9|CHX18_ARATH	--**	Cation/H(+) antiporter 18	IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf01436g04013.1	gb|AAC49973.1|	--*-	ORF; able to induce HR-like lesions [Nicotiana tabacum]		
Niben101Scf09387g00005.1	AT1G62780.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 94 Blast hits to 94 proteins in 35 species: Archae - 6; Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). LENGTH=237		
Niben101Scf01526g04013.1			Unknown protein		
Niben101Scf03487g00013.1	AT2G31040.1	***-	ATP synthase protein I -related LENGTH=350		
Niben101Scf14344g01018.1	sp|Q9C7D7|CNIH1_ARATH	***-	Protein cornichon homolog 1	IPR003377 (Cornichon)	GO:0016020 (membrane), GO:0035556 (intracellular signal transduction)
Niben101Scf39444g00001.1	tpg|DAA53070.1|	***-	TPA: transposon protein CACTA, En/Spm sub-class [Zea mays]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf02757g04015.1	sp|Q9LL84|DNLI4_ARATH	*-**	DNA ligase 4	IPR012308 (DNA ligase, ATP-dependent, N-terminal), IPR029710 (DNA ligase 4)	GO:0003677 (DNA binding), GO:0003910 (DNA ligase (ATP) activity), GO:0005524 (ATP binding), GO:0006281 (DNA repair), GO:0006310 (DNA recombination), GO:0051103 (DNA ligation involved in DNA repair)
Niben101Scf02582g05007.1	sp|P48709|RBL_NICDE	*-*-	Ribulose bisphosphate carboxylase large chain	IPR000685 (Ribulose bisphosphate carboxylase, large subunit, C-terminal)	GO:0000287 (magnesium ion binding)
Niben101Scf01949g00002.1	sp|Q6EW36|PSBE_NYMAL	***-	Cytochrome b559 subunit alpha	IPR006217 (Photosystem II cytochrome b559, alpha subunit)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf01831g01005.1	sp|Q8WVK2|SNR27_HUMAN	*-*-	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein	IPR013957 (Domain of unknown function DUF1777)	
Niben101Scf12976g00007.1	AT4G35160.1	****	O-methyltransferase family protein LENGTH=382	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf04205g00002.1	sp|A9JRC7|PP4CB_DANRE	***-	Serine/threonine-protein phosphatase 4 catalytic subunit B	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf10332g01008.1	sp|Q8S0F0|FH1_ORYSJ	*-*-	Formin-like protein 1	IPR015425 (Formin, FH2 domain)	
Niben101Scf02285g01028.1	AT5G52570.1	***-	beta-carotene hydroxylase 2 LENGTH=303	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06032g01010.1	sp|P22242|DRPE_CRAPL	***-	Desiccation-related protein PCC13-62		
Niben101Scf02724g05015.1	ref|XP_005708044.1|	*-**	transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Galdieria sulphuraria] gb|EME31524.1| transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Galdieria sulphuraria]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf05713g01008.1	AT1G12480.1	*-**	C4-dicarboxylate transporter/malic acid transport protein LENGTH=556	IPR004695 (Voltage-dependent anion channel)	GO:0006873 (cellular ion homeostasis), GO:0008308 (voltage-gated anion channel activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf07850g06015.1	sp|P0DI32|CASP1_TARKO	***-	Casparian strip membrane protein 1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf03241g00014.1	gb|AET03373.2|	***-	isochorismatase hydrolase family protein [Medicago truncatula]	IPR000868 (Isochorismatase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf05534g01014.1	sp|Q5R668|ACSL3_PONAB	***-	Long-chain-fatty-acid--CoA ligase 3	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf08199g02017.1	sp|P55088|AQP4_MOUSE	***-	Aquaporin-4	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf09928g00019.1	AT5G15350.1	*-*-	early nodulin-like protein 17 LENGTH=172	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf07259g00002.1	ref|XP_007037512.1|	***-	ATP-binding cassette sub-family D member 4, putative [Theobroma cacao] gb|EOY22013.1| ATP-binding cassette sub-family D member 4, putative [Theobroma cacao]		
Niben101Scf05029g01002.1	sp|P20238|MT1_ERYGU	***-	Metallothionein-like protein 1	IPR000347 (Metallothionein, family 15, plant)	GO:0046872 (metal ion binding)
Niben101Scf01768g02025.1	sp|A2BKX5|VATB_HYPBU	****	V-type ATP synthase beta chain	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf06687g03001.1	AT1G73460.1	****	Protein kinase superfamily protein LENGTH=1169	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04217g02010.1			Unknown protein		
Niben101Scf07325g00027.1	AT1G03220.1	***-	Eukaryotic aspartyl protease family protein LENGTH=433	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03231g01007.1	AT1G20460.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=106		
Niben101Scf01764g01013.1	sp|Q9CQK7|RWDD1_MOUSE	***-	RWD domain-containing protein 1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	GO:0005515 (protein binding)
Niben101Scf01634g02018.1	sp|P29691|EF2_CAEEL	*-*-	Elongation factor 2	IPR000795 (Elongation factor, GTP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf00663g00008.1	AT2G19080.1	*-*-	metaxin-related LENGTH=315	IPR010987 (Glutathione S-transferase, C-terminal-like)	
Niben101Scf01146g09030.1	sp|O34392|YTRE_BACSU	*-**	ABC transporter ATP-binding protein YtrE	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Ctg16278g00003.1	sp|Q8N9B4|ANR42_HUMAN	*-*-	Ankyrin repeat domain-containing protein 42	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf00349g06007.1	sp|Q27450|CYP1_BRUMA	*-**	Peptidyl-prolyl cis-trans isomerase 1	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf08701g00006.1	sp|Q9LEX0|P2A13_ARATH	***-	F-box protein PP2-A13	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf01986g00018.1	AT5G46330.1	***-	Leucine-rich receptor-like protein kinase family protein LENGTH=1173	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Ctg14776g00004.1	gb|AEW48209.1|	*-*-	disease resistance protein RGH5 [Solanum huancabambense]		
Niben101Scf01940g00010.1	AT1G48480.1	****	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10092g00007.1	sp|Q9AKH1|FER2_RICRI	***-	2Fe-2S ferredoxin	IPR001055 (Adrenodoxin), IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf04915g05007.1	gb|KEH18174.1|	--*-	vacuolar iron transporter-like protein [Medicago truncatula]		
Niben101Scf00150g02011.1	sp|Q3SZR8|SRSF3_BOVIN	*-*-	Serine/arginine-rich splicing factor 3	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07767g02001.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf15532g01009.1	sp|A5V5Q2|GRPE_SPHWW	*-*-	Protein GrpE	IPR000740 (GrpE nucleotide exchange factor)	GO:0000774 (adenyl-nucleotide exchange factor activity), GO:0006457 (protein folding), GO:0042803 (protein homodimerization activity), GO:0051087 (chaperone binding)
Niben101Scf02789g01005.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf03189g04012.1	sp|P54688|BCAT_CAEEL	--*-	Branched-chain-amino-acid aminotransferase, cytosolic		
Niben101Scf03302g00011.1	sp|Q9SJJ3|BLH8_ARATH	*-*-	BEL1-like homeodomain protein 8	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf17701g00006.1	sp|Q8NFV4|ABHDB_HUMAN	--*-	Alpha/beta hydrolase domain-containing protein 11	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf08191g02001.1	sp|P16097|CAPP2_MESCR	*-**	Phosphoenolpyruvate carboxylase 2	IPR021135 (Phosphoenolpyruvate carboxylase)	GO:0003824 (catalytic activity), GO:0006099 (tricarboxylic acid cycle), GO:0008964 (phosphoenolpyruvate carboxylase activity), GO:0015977 (carbon fixation)
Niben101Scf01616g03005.1	sp|Q8K9H6|DEAD_BUCAP	****	ATP-dependent RNA helicase DeaD	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf05371g06005.1	sp|Q8BHN5|RBM45_MOUSE	*-**	RNA-binding protein 45	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04739g02010.1	sp|Q1CZI7|HTPG_MYXXD	*-*-	Chaperone protein HtpG	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf05158g01009.1	AT1G15550.1	*-*-	gibberellin 3-oxidase 1 LENGTH=358	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02381g08019.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11484g00004.1	AT1G76010.1	*-**	Alba DNA/RNA-binding protein LENGTH=350	IPR002775 (DNA/RNA-binding protein Alba-like), IPR012336 (Thioredoxin-like fold)	GO:0003676 (nucleic acid binding)
Niben101Scf01453g05007.1	sp|Q6K5F8|CDKG1_ORYSJ	*-**	Cyclin-dependent kinase G-1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04883g00008.1			Unknown protein		
Niben101Scf02293g03024.1	sp|Q9S7N7|PSAG_ARATH	****	Photosystem I reaction center subunit V, chloroplastic	IPR000549 (Photosystem I PsaG/PsaK protein), IPR023618 (Photosystem I PsaG/PsaK domain)	GO:0009522 (photosystem I), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0016168 (chlorophyll binding)
Niben101Scf10306g00024.1	sp|O82013|HSP21_SOLPE	***-	17.3 kDa class II heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf12954g04006.1	sp|Q9ZW24|GSTU7_ARATH	***-	Glutathione S-transferase U7	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf12983g01048.1	sp|P40694|SMBP2_MOUSE	***-	DNA-binding protein SMUBP-2	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02348g10009.1	sp|P92934|AAP6_ARATH	***-	Amino acid permease 6	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf00023g05007.1	sp|Q2UF60|SEC31_ASPOR	--*-	Protein transport protein sec31		
Niben101Scf00974g03007.1	AT2G32910.1	*-*-	DCD (Development and Cell Death) domain protein LENGTH=691	IPR013989 (Development/cell death domain)	
Niben101Scf02217g02022.1	AT1G76480.2	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=231		
Niben101Scf02423g02022.1			Unknown protein		
Niben101Scf00416g06010.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02807g03013.1	AT3G21790.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=495	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Ctg12045g00002.1	sp|Q94JM3|ARFB_ARATH	*-*-	Auxin response factor 2	IPR015300 (DNA-binding pseudobarrel domain)	
Niben101Scf01432g01005.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01371g03010.1	sp|O49929|OEP24_PEA	***-	Outer envelope pore protein 24, chloroplastic		
Niben101Scf00961g01023.1	sp|Q62925|M3K1_RAT	*-*-	Mitogen-activated protein kinase kinase kinase 1	IPR007527 (Zinc finger, SWIM-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00560g05004.1	ref|XP_002512808.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF49311.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00854g09004.1	sp|Q9ZCG2|NUOK_RICPR	****	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf09119g00007.1	sp|Q8T277|PRKAG_DICDI	*-*-	5'-AMP-activated protein kinase subunit gamma	IPR000644 (CBS domain), IPR014756 (Immunoglobulin E-set)	
Niben101Scf08020g02002.1	sp|Q9SUY0|FB244_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf00415g05004.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04375g06001.1			Unknown protein		
Niben101Scf11601g00015.1	sp|Q5JS54|PSMG4_HUMAN	***-	Proteasome assembly chaperone 4		
Niben101Scf02471g05006.1	sp|P40228|CSK2B_ARATH	*-**	Casein kinase II subunit beta	IPR000704 (Casein kinase II, regulatory subunit)	GO:0005956 (protein kinase CK2 complex), GO:0019887 (protein kinase regulator activity)
Niben101Scf04473g14020.1	emb|CDX72133.1|	***-	BnaC08g27410D [Brassica napus]		
Niben101Scf04167g00004.1	sp|Q9SCU0|SDR2A_ARATH	****	Short-chain dehydrogenase reductase 2a	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf06727g00015.1	ref|XP_002308022.1|	*-**	GTP-binding family protein [Populus trichocarpa] gb|EEE91545.1| GTP-binding family protein [Populus trichocarpa]	IPR006073 (GTP binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00063g01018.1	AT1G63340.1	****	Flavin-containing monooxygenase family protein LENGTH=424	IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01521g05004.1	AT1G26480.1	***-	general regulatory factor 12 LENGTH=268	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf08462g01014.1	sp|Q9SYF5|GLIP3_ARATH	***-	GDSL esterase/lipase 3	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01383g07003.1	sp|Q9LTH8|ACH11_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 11	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf08926g03007.1	sp|Q7ZWF4|RN145_DANRE	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04950g07027.1	sp|Q561X3|MED4_DANRE	--**	Mediator of RNA polymerase II transcription subunit 4	IPR019258 (Mediator complex, subunit Med4)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf02307g02001.1	sp|O95696|BRD1_HUMAN	*-*-	Bromodomain-containing protein 1	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf00457g04004.1	sp|Q6AXT8|SF3A2_RAT	*-*-	Splicing factor 3A subunit 2	IPR003604 (Zinc finger, U1-type), IPR019134 (Cactin, C-terminal)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf07121g05002.1	sp|Q55DB6|AHSA_DICDI	****	Activator of 90 kDa heat shock protein ATPase homolog	IPR013538 (Activator of Hsp90 ATPase homologue 1-like), IPR015310 (Activator of Hsp90 ATPase, N-terminal), IPR023393 (START-like domain)	GO:0001671 (ATPase activator activity), GO:0006950 (response to stress), GO:0051087 (chaperone binding)
Niben101Scf02854g10006.1	AT4G36180.1	***-	Leucine-rich receptor-like protein kinase family protein LENGTH=1136	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf02044g13008.1	sp|Q4IBK5|PPIL2_GIBZE	*-**	Peptidyl-prolyl cis-trans isomerase-like 2	IPR001878 (Zinc finger, CCHC-type), IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR029000 (Cyclophilin-like domain)	GO:0000166 (nucleotide binding), GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003676 (nucleic acid binding), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding), GO:0008270 (zinc ion binding)
Niben101Scf00853g02015.1	sp|Q4WCR3|PPIL1_ASPFU	*-**	Peptidyl-prolyl cis-trans isomerase-like 1	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0004842 (ubiquitin-protein transferase activity), GO:0006457 (protein folding), GO:0016567 (protein ubiquitination)
Niben101Scf04703g06006.1	sp|Q9SLN5|MAP1A_ARATH	****	Methionine aminopeptidase 1A	IPR000994 (Peptidase M24, structural domain), IPR001714 (Peptidase M24, methionine aminopeptidase)	GO:0004177 (aminopeptidase activity), GO:0006508 (proteolysis), GO:0008235 (metalloexopeptidase activity)
Niben101Scf09792g02010.1	AT1G03920.1	****	Protein kinase family protein LENGTH=569	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05035g01002.1	sp|Q5RJY4|DRS7B_RAT	*-**	Dehydrogenase/reductase SDR family member 7B	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01718g08028.1	AT3G18490.1	***-	Eukaryotic aspartyl protease family protein LENGTH=500	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02266g01011.1	sp|A8AAC1|FEN_IGNH4	***-	Flap endonuclease 1	IPR006085 (XPG N-terminal), IPR006086 (XPG-I domain), IPR020045 (5'-3' exonuclease, C-terminal domain), IPR029060 (PIN domain-like)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0004518 (nuclease activity), GO:0006281 (DNA repair)
Niben101Scf06685g00014.1	ref|NP_001234800.1|	***-	ethylene-responsive nuclear protein [Solanum lycopersicum] gb|ABB13294.1| ethylene-responsive nuclear protein [Solanum lycopersicum]		
Niben101Scf01422g01001.1	gb|AEK83437.1|	*-*-	At5g60700-like protein [Capsella grandiflora]	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf04614g07007.1	sp|O42954|MBX1_SCHPO	--*-	MADS-box transcription factor 1	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03253g02010.1	sp|Q9Z2Z9|GFPT2_MOUSE	****	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2	IPR005855 (Glucosamine-fructose-6-phosphate aminotransferase, isomerising), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004360 (glutamine-fructose-6-phosphate transaminase (isomerizing) activity), GO:0005975 (carbohydrate metabolic process), GO:0008152 (metabolic process), GO:0016051 (carbohydrate biosynthetic process), GO:0030246 (carbohydrate binding)
Niben101Scf02437g02021.1	AT2G24360.1	****	Protein kinase superfamily protein LENGTH=411	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08863g01010.1	AT2G24610.1	***-	cyclic nucleotide-gated channel 14 LENGTH=726	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf10556g00025.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03044g00006.1	ref|NP_175508.2|	****	cell redox home [Arabidopsis thaliana]	IPR012336 (Thioredoxin-like fold), IPR012936 (Endoplasmic reticulum vesicle transporter, C-terminal)	GO:0045454 (cell redox homeostasis)
Niben101Scf02572g01007.1	dbj|BAB08270.1|	--*-	non-LTR retroelement reverse transcriptase-like protein [Arabidopsis thaliana]		
Niben101Scf03565g02017.1			Unknown protein		
Niben101Scf14577g01006.1	sp|F1MBP6|KLHL3_BOVIN	--*-	Kelch-like protein 3	IPR001810 (F-box domain), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf01789g02023.1	sp|Q08435|PMA1_NICPL	****	Plasma membrane ATPase 1	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane)
Niben101Scf01295g05007.1	sp|Q6A332|ALY3_ARATH	***-	Protein ALWAYS EARLY 3	IPR009057 (Homeodomain-like), IPR010561 (Protein LIN-9/Protein ALWAYS EARLY)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0006351 (transcription, DNA-templated), GO:0007049 (cell cycle), GO:0017053 (transcriptional repressor complex)
Niben101Scf04109g00001.1	sp|Q9M565|TAF11_ARATH	*-**	Transcription initiation factor TFIID subunit 11	IPR006809 (TAFII28-like protein)	GO:0005634 (nucleus), GO:0006367 (transcription initiation from RNA polymerase II promoter), GO:0046982 (protein heterodimerization activity)
Niben101Scf02077g12029.1	sp|P59015|VPS18_DANRE	*-*-	Vacuolar protein sorting-associated protein 18 homolog	IPR000547 (Clathrin, heavy chain/VPS, 7-fold repeat), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport)
Niben101Scf04950g03010.1	gb|AAT38781.2|	--*-	Receptor-like protein kinase, putative [Solanum demissum]		
Niben101Scf02627g01021.1	AT4G26965.1	****	NADH:ubiquinone oxidoreductase, 17.2kDa subunit LENGTH=184	IPR007763 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0009055 (electron carrier activity), GO:0016020 (membrane)
Niben101Scf13857g00017.1			Unknown protein		
Niben101Scf02244g00007.1	sp|A3Q339|MHPA_MYCSJ	***-	3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	IPR003042 (Aromatic-ring hydroxylase-like)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Ctg03867g00002.1	sp|Q819L4|SPEA_BACCR	*-*-	Arginine decarboxylase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf04738g03003.1	AT5G16010.1	***-	3-oxo-5-alpha-steroid 4-dehydrogenase family protein LENGTH=268	IPR001104 (3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal)	GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
Niben101Scf13289g00010.1	sp|B7N929|AES_ECOLU	*-*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01999g05006.1	sp|Q93X49|LEC_LENCO	***-	Lectin	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0030246 (carbohydrate binding)
Niben101Scf07386g00021.1	AT4G11440.1	***-	Mitochondrial substrate carrier family protein LENGTH=628	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf02632g03012.1	sp|P18417|STSY_CATRO	--*-	Strictosidine synthase		
Niben101Scf12718g00006.1	sp|O80929|RL361_ARATH	***-	60S ribosomal protein L36-1	IPR000509 (Ribosomal protein L36e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06507g00008.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf01371g04005.1	AT1G75140.1	***-	unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=617	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05920g00005.1	ref|YP_009091709.1|	*-*-	orf109 (mitochondrion) [Panax ginseng] gb|AHJ81034.1| orf109 (mitochondrion) [Panax ginseng]		
Niben101Scf04878g00022.1	sp|F1NBT0|STK10_CHICK	*-**	Serine/threonine-protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09209g02010.1	sp|P47735|RLK5_ARATH	--**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04893g01007.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf11756g01019.1	sp|Q8GWK2|AP2L4_ARATH	--**	AP2-like ethylene-responsive transcription factor	IPR001471 (AP2/ERF domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03599g01010.1	ref|NP_001068267.2|	--*-	[Oryza sativa Japonica Group] dbj|BAF28630.2| [Oryza sativa Japonica Group]		
Niben101Scf06207g01011.1	AT4G25500.1	***-	arginine/serine-rich splicing factor 35 LENGTH=350	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR029537 (Arginine/serine-rich-splicing factor RSP40/RSP41)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04375g04007.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf21557g00013.1	sp|Q29RM3|REEP5_BOVIN	***-	Receptor expression-enhancing protein 5	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf03789g01009.1	ref|XP_003599924.1|	*-**	ATP-dependent DNA helicase PIF1 [Medicago truncatula]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf07374g00005.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf14374g00004.1	emb|CDY46897.1|	***-	BnaA01g27970D [Brassica napus]		
Niben101Scf01350g05002.1			Unknown protein		
Niben101Scf11078g01008.1	tpg|DAA36988.1|	***-	TPA: hypothetical protein ZEAMMB73_408601 [Zea mays]	IPR006968 (Root UVB sensitive family)	
Niben101Scf03819g03013.1	AT5G39210.1	*-*-	chlororespiratory reduction 7 LENGTH=156	IPR021954 (Protein of unknown function DUF3571)	
Niben101Scf02168g01001.1	gb|AAT66777.2|	*-*-	Late blight resistance protein, putative [Solanum demissum]		
Niben101Scf08018g00009.1	ref|XP_002511182.1|	***-	nucleic acid binding protein, putative [Ricinus communis] gb|EEF51784.1| nucleic acid binding protein, putative [Ricinus communis]		
Niben101Scf14282g00008.1	AT5G48310.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=1156		
Niben101Scf07155g02010.1	sp|Q5R9U6|PP4R2_PONAB	*-*-	Serine/threonine-protein phosphatase 4 regulatory subunit 2	IPR015267 (Protein phosphatase 4 core regulatory subunit R2)	
Niben101Scf02919g03001.1	sp|P0CC49|NU2C2_COFAR	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf04535g00003.1	sp|Q9C8Y6|FBD5_ARATH	--*-	FBD-associated F-box protein		
Niben101Scf02044g05002.1	AT4G38070.1	*-*-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=1513		
Niben101Scf02476g03010.1	AT2G36770.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03885g08003.1			Unknown protein		
Niben101Scf10343g01002.1	sp|P46279|RPB7_SOYBN	****	DNA-directed RNA polymerase II subunit RPB7	IPR005576 (RNA polymerase Rpb7, N-terminal), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf07386g00023.1	gb|KEH27432.1|	***-	DUF3527 domain protein [Medicago truncatula]	IPR021916 (Protein of unknown function DUF3527)	
Niben101Scf02502g06013.1	sp|P0CP85|PPIL1_CRYNB	****	Peptidyl-prolyl cis-trans isomerase-like 1	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf08182g01002.1	sp|F4JC97|PSME4_ARATH	***-	Proteasome activator subunit 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf13201g00001.1	emb|CDX85682.1|	***-	BnaA02g01310D [Brassica napus]		
Niben101Scf06412g04011.1	AT2G16920.1	*-*-	ubiquitin-conjugating enzyme 23 LENGTH=1102	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf08755g02004.1	sp|Q9LSD8|MUB4_ARATH	***-	Membrane-anchored ubiquitin-fold protein 4	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf05880g03002.1	AT5G10240.1	*-*-	asparagine synthetase 3 LENGTH=578		
Niben101Scf00113g01006.1	ref|WP_031105858.1|	--*-	peptidase [Streptomyces sp. NRRL S-146]	IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity)
Niben101Scf09649g02003.1	sp|Q12S35|RHLB_SHEDO	****	ATP-dependent RNA helicase RhlB	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf05468g01004.1	gb|AES90256.2|	*-*-	DNA polymerase I-like protein [Medicago truncatula]		
Niben101Scf03422g04001.1	sp|B0SW60|RUTB_CAUSK	***-	Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB	IPR000868 (Isochorismatase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00854g05001.1			Unknown protein		
Niben101Scf02543g00008.1	sp|Q8IZU2|WDR17_HUMAN	*-*-	WD repeat-containing protein 17	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00457g04003.1	sp|Q8L850|PI5K9_ARATH	****	Phosphatidylinositol 4-phosphate 5-kinase 9	IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf00034g01013.1			Unknown protein		
Niben101Scf05414g02023.1	sp|P49098|CYB5_TOBAC	***-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf05437g00006.1	ref|XP_002872761.1|	--*-	F21B7.33 [Arabidopsis lyrata subsp. lyrata] gb|EFH49020.1| F21B7.33 [Arabidopsis lyrata subsp. lyrata]		
Niben101Scf04099g07001.1			Unknown protein		
Niben101Scf09087g01017.1	sp|Q9GZN6|S6A16_HUMAN	--*-	Orphan sodium- and chloride-dependent neurotransmitter transporter NTT5		
Niben101Scf03457g00003.1	AT3G59660.1	***-	C2 domain-containing protein / GRAM domain-containing protein LENGTH=594	IPR000008 (C2 domain), IPR004182 (GRAM domain)	GO:0005515 (protein binding)
Niben101Scf03371g00013.1	ref|XP_003630569.1|	***-	Mitochondrial phosphate carrier protein [Medicago truncatula]	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf05226g05015.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01987g00003.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf07663g03008.1	sp|Q6AWW5|Y5262_ARATH	*-*-	Ankyrin repeat-containing protein	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01795g09008.1	sp|Q8DMU4|NDHO_THEEB	--**	NAD(P)H-quinone oxidoreductase subunit O	IPR020905 (NAD(P)H-quinone oxidoreductase subunit O)	GO:0005886 (plasma membrane), GO:0016655 (oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf04692g04001.1	sp|Q2TBQ8|6PGL_BOVIN	*-*-	6-phosphogluconolactonase	IPR006148 (Glucosamine/galactosamine-6-phosphate isomerase)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf00393g02002.1	sp|Q3T0Z8|RUXF_BOVIN	***-	Small nuclear ribonucleoprotein F	IPR010920 (Like-Sm (LSM) domain), IPR016487 (Small nuclear ribonucleoprotein SmF)	GO:0005634 (nucleus), GO:0006396 (RNA processing)
Niben101Scf03842g04002.1	emb|CDY53359.1|	*-*-	BnaC04g54390D [Brassica napus]		
Niben101Scf03772g02005.1	tpg|DAA62228.1|	-**-	TPA: hypothetical protein ZEAMMB73_029653 [Zea mays] tpg|DAA62229.1| TPA: hypothetical protein ZEAMMB73_029653 [Zea mays]		
Niben101Scf02731g00004.1	sp|O49686|PYR1_ARATH	***-	Abscisic acid receptor PYR1	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf02910g01032.1	gb|KEH21046.1|	***-	myosin heavy chain-like protein [Medicago truncatula]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf03320g05007.1			Unknown protein		
Niben101Scf13162g00006.1	emb|CDY03857.1|	***-	BnaC07g10820D [Brassica napus]	IPR012438 (Protein of unknown function DUF1639)	
Niben101Scf00726g02024.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01612g02014.1	sp|B7UVA7|GPDA_PSEA8	*-**	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	IPR006168 (Glycerol-3-phosphate dehydrogenase, NAD-dependent), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004367 (glycerol-3-phosphate dehydrogenase [NAD+] activity), GO:0005737 (cytoplasm), GO:0005975 (carbohydrate metabolic process), GO:0006072 (glycerol-3-phosphate metabolic process), GO:0009331 (glycerol-3-phosphate dehydrogenase complex), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0046168 (glycerol-3-phosphate catabolic process), GO:0050662 (coenzyme binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05301g03002.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf02244g00006.1	AT1G10530.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=166	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf03184g01010.1	AT1G16860.1	***-	Ubiquitin-specific protease family C19-related protein LENGTH=474		
Niben101Scf05884g00003.1	sp|Q99LG4|TTC5_MOUSE	*-*-	Tetratricopeptide repeat protein 5	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06819g00010.1	sp|Q9ZQI8|NLTL2_ARATH	*-**	Non-specific lipid-transfer protein-like protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf00683g00002.1			Unknown protein		
Niben101Scf02511g04008.1	AT4G11070.1	*-**	WRKY family transcription factor LENGTH=313	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00927g08010.1	sp|Q5PNY6|PUB21_ARATH	***-	U-box domain-containing protein 21	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf10556g00026.1	sp|Q9ZVJ3|MA655_ARATH	****	65-kDa microtubule-associated protein 5	IPR007145 (Microtubule-associated protein, MAP65/Ase1/PRC1)	GO:0000226 (microtubule cytoskeleton organization), GO:0000910 (cytokinesis), GO:0008017 (microtubule binding)
Niben101Scf05678g00008.1	sp|Q9SZL8|FRS5_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 5		
Niben101Scf08508g00008.1	sp|P51102|DFRA_ARATH	***-	Dihydroflavonol-4-reductase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf11303g00005.1	AT1G23710.1	***-	Protein of unknown function (DUF1645) LENGTH=295	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf00509g01017.1	sp|Q1J982|ECFA1_STRPB	****	Energy-coupling factor transporter ATP-binding protein EcfA1	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf06087g07001.1	gb|KEH17430.1|	*-*-	DnaJ heat shock amino-terminal domain protein [Medicago truncatula]	IPR001623 (DnaJ domain)	
Niben101Scf01799g00001.1	sp|Q6NMQ7|GASA6_ARATH	***-	Gibberellin-regulated protein 6	IPR003854 (Gibberellin regulated protein)	
Niben101Scf01818g02012.1	ref|XP_003597140.1|	*-**	CCR4-NOT transcription complex subunit [Medicago truncatula] gb|AES67391.1| RNA-binding (RRM/RBD/RNP motif) family protein [Medicago truncatula]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01959g03006.1	sp|A3MN47|KDSB_BURM7	****	3-deoxy-manno-octulosonate cytidylyltransferase	IPR003329 (Acylneuraminate cytidylyltransferase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005737 (cytoplasm), GO:0008690 (3-deoxy-manno-octulosonate cytidylyltransferase activity), GO:0009103 (lipopolysaccharide biosynthetic process)
Niben101Scf11126g06002.1			Unknown protein		
Niben101Scf02001g00006.1	sp|Q69ZU8|ANKR6_MOUSE	*-*-	Ankyrin repeat domain-containing protein 6	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf01463g05007.1	sp|Q2H080|RM04_CHAGB	*-**	54S ribosomal protein L4, mitochondrial	IPR001854 (Ribosomal protein L29), IPR010729 (Ribosomal protein L47, mitochondrial)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005761 (mitochondrial ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01584g00003.1	emb|CDY42075.1|	*-*-	BnaA05g11110D [Brassica napus]	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Scf06969g01015.1	sp|Q80Y81|RNZ2_MOUSE	--*-	Zinc phosphodiesterase ELAC protein 2	IPR001279 (Beta-lactamase-like)	
Niben101Scf02439g00023.1	AT1G27045.1	*-*-	Homeobox-leucine zipper protein family LENGTH=227	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08581g01011.1	sp|Q1LZA0|PIGB_BOVIN	***-	GPI mannosyltransferase 3	IPR005599 (GPI mannosyltransferase)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf24082g00010.1	sp|B4GIJ0|WDR48_DROPE	*-*-	WD repeat-containing protein 48 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf05552g10001.1	sp|Q9Y2E6|DTX4_HUMAN	--*-	E3 ubiquitin-protein ligase DTX4		
Niben101Scf00094g03003.1	sp|A2RVP7|TI221_ARATH	***-	Mitochondrial import inner membrane translocase subunit TIM22-1	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Scf03945g00016.1	AT4G25500.1	*-*-	arginine/serine-rich splicing factor 35 LENGTH=350	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR029537 (Arginine/serine-rich-splicing factor RSP40/RSP41)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02478g01002.1	sp|Q07262|1A1C_TOBAC	*-*-	1-aminocyclopropane-1-carboxylate synthase		
Niben101Scf01091g00033.1	sp|Q9D0W5|PPIL1_MOUSE	*-**	Peptidyl-prolyl cis-trans isomerase-like 1	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR023222 (PsbQ-like domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf03469g03002.1	AT3G22750.1	****	Protein kinase superfamily protein LENGTH=378	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04296g00023.1			Unknown protein		
Niben101Scf00837g10012.1	AT4G24190.1	*-*-	Chaperone protein htpG family protein LENGTH=823	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf03488g04009.1	gb|AAU95633.1|	***-	R1 [Solanum tuberosum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf23821g00012.1	sp|B2VDG5|RLMI_ERWT9	--**	Ribosomal RNA large subunit methyltransferase I	IPR004398 (RNA methyltransferase, RsmD), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0031167 (rRNA methylation)
Niben101Scf07228g00004.1	AT1G09380.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=374	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf00087g06009.1	sp|Q3EDF8|PPR28_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR000644 (CBS domain), IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06172g04005.1	sp|Q2LVL0|MSBA_SYNAS	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf00005g01010.1	sp|Q3MHH6|PYRD2_BOVIN	*-*-	Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2		
Niben101Scf00687g03009.1	AT4G01870.1	***-	tolB protein-related LENGTH=652	IPR011042 (Six-bladed beta-propeller, TolB-like), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00894g01012.1	gb|ADK97918.1|	***-	LuxR family transcriptional regulator [Schiedea globosa]		
Niben101Scf01395g03019.1	AT4G20820.1	*-**	FAD-binding Berberine family protein LENGTH=532	IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf12540g01008.1	emb|CDX74218.1|	--*-	BnaA03g28290D [Brassica napus]		
Niben101Scf10217g00013.1	sp|Q93Z16|RPN2_ARATH	***-	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	IPR008814 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1)	GO:0006487 (protein N-linked glycosylation), GO:0008250 (oligosaccharyltransferase complex), GO:0016021 (integral component of membrane)
Niben101Scf04109g07003.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]		
Niben101Scf01556g04026.1			Unknown protein		
Niben101Scf00819g08011.1	sp|Q9LYM3|LOR14_ARATH	***-	Protein LURP-one-related 14	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf04772g00009.1	sp|Q9SVA5|PP357_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Ctg14813g00001.1	AT4G13930.1	*-**	serine hydroxymethyltransferase 4 LENGTH=471	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00327g01011.1	AT3G20920.1	***-	translocation protein-related LENGTH=365	IPR004728 (Translocation protein Sec62)	GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf09317g02007.1	ref|XP_007039727.1|	***-	ATP-dependent caseinolytic protease/crotonase family protein [Theobroma cacao] gb|EOY24228.1| ATP-dependent caseinolytic protease/crotonase family protein [Theobroma cacao]		
Niben101Scf00607g02006.1	AT2G34410.1	***-	O-acetyltransferase family protein LENGTH=540	IPR012419 (Cas1p 10 TM acyl transferase domain)	
Niben101Scf09063g02007.1			Unknown protein		
Niben101Scf10849g00001.1	sp|Q9LUG5|RPF2_ARATH	*-*-	Ribosome production factor 2 homolog		
Niben101Scf08195g05003.1	emb|CDY17236.1|	***-	BnaA05g09520D [Brassica napus]	IPR007608 (Senescence regulator S40)	
Niben101Scf10329g03026.1	AT5G08580.1	****	Calcium-binding EF hand family protein LENGTH=391	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf08206g02023.1	sp|Q93VH6|GIF3_ARATH	*-*-	GRF1-interacting factor 3	IPR007726 (SS18 family)	
Niben101Scf02764g02003.1	sp|O48660|SPDE_NICSY	*-*-	Spermidine synthase	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf03278g04007.1	sp|P34840|COX2_ANOGA	*-*-	Cytochrome c oxidase subunit 2	IPR000114 (Ribosomal protein L16), IPR008972 (Cupredoxin), IPR011759 (Cytochrome C oxidase subunit II, transmembrane domain), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0016021 (integral component of membrane), GO:0019843 (rRNA binding), GO:0022900 (electron transport chain)
Niben101Scf02752g01011.1	sp|Q8VY89|APC7_ARATH	***-	Anaphase-promoting complex subunit 7	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf09201g00004.1	ref|XP_002519967.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF42415.1| conserved hypothetical protein [Ricinus communis]		
Niben101Ctg11356g00001.1	sp|Q9XEE9|ALG11_ARATH	*-*-	GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf12339g01013.1	sp|A4J678|MTNA_DESRM	*-*-	Methylthioribose-1-phosphate isomerase	IPR000649 (Initiation factor 2B-related)	GO:0044237 (cellular metabolic process)
Niben101Scf00854g06052.1	sp|Q1ACK9|MATK_CHAVU	--*-	Maturase K	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf01512g03003.1	sp|O49686|PYR1_ARATH	***-	Abscisic acid receptor PYR1	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf03169g08014.1	AT5G46060.1	***-	Protein of unknown function, DUF599 LENGTH=248	IPR006747 (Protein of unknown function DUF599)	
Niben101Scf22688g00017.1	sp|Q38882|PLDA1_ARATH	****	Phospholipase D alpha 1	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0004630 (phospholipase D activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0046470 (phosphatidylcholine metabolic process)
Niben101Scf03203g06008.1	AT2G37730.1	***-	Protein of unknown function (DUF604) LENGTH=532	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf26089g02003.1	AT1G35830.1	*-*-	VQ motif-containing protein LENGTH=302	IPR008889 (VQ)	
Niben101Scf02190g00001.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06467g07006.1	sp|Q27GI3|NAT6_ARATH	*-**	Nucleobase-ascorbate transporter 6	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf07398g02004.1	AT1G26480.1	***-	general regulatory factor 12 LENGTH=268	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf01188g08016.1	sp|Q9VCA2|ORCT_DROME	****	Organic cation transporter protein	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03021g02010.1	sp|Q92383|MAG1_SCHPO	--**	DNA-3-methyladenine glycosylase 1	IPR011257 (DNA glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair)
Niben101Scf03723g04003.1	sp|Q5L0J5|RASP_GEOKA	*-*-	Zinc metalloprotease RasP	IPR008915 (Peptidase M50)	GO:0004222 (metalloendopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf05146g05003.1	gb|KEH44010.1|	***-	MADS-box transcription factor family protein [Medicago truncatula]	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf07748g02004.1			Unknown protein		
Niben101Scf06739g03002.1	gb|ELR54602.1|	--*-	LINE-1 reverse transcriptase-like protein [Bos mutus]		
Niben101Scf07424g02025.1	sp|Q8LJT8|TKI1_ARATH	*-*-	TSL-kinase interacting protein 1		
Niben101Scf09234g02008.1	sp|Q86TI4|WDR86_HUMAN	*-*-	WD repeat-containing protein 86	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR021772 (Protein of unknown function DUF3337)	GO:0005515 (protein binding)
Niben101Scf08211g01009.1			Unknown protein		
Niben101Scf00883g01009.1			Unknown protein		
Niben101Scf01326g04009.1	sp|Q5EAR6|CC115_DANRE	-**-	Coiled-coil domain-containing protein 115		
Niben101Scf01060g01008.1	sp|Q9SYG9|CCX4_ARATH	***-	Cation/calcium exchanger 4	IPR004837 (Sodium/calcium exchanger membrane region)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00059g04020.1	gb|ABF95303.1|	*-*-	expressed protein [Oryza sativa Japonica Group]	IPR022212 (Protein of unknown function DUF3741), IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf04218g00008.1	emb|CDY66526.1|	***-	BnaC05g49910D [Brassica napus]	IPR013328 (Dehydrogenase, multihelical)	GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08134g00003.1			Unknown protein		
Niben101Scf00317g04009.1	AT1G70170.1	****	matrix metalloproteinase LENGTH=378	IPR021190 (Peptidase M10A), IPR024079 (Metallopeptidase, catalytic domain)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity), GO:0008270 (zinc ion binding), GO:0031012 (extracellular matrix)
Niben101Scf02468g11005.1	sp|B5FG80|NORW_VIBFM	*-**	Nitric oxide reductase FlRd-NAD(+) reductase	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04424g02002.1	sp|Q9SXZ2|FT_ARATH	***-	Protein FLOWERING LOCUS T	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf07673g01007.1	AT3G32047.1	*-*-	Cytochrome P450 superfamily protein LENGTH=502	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf18660g00012.1	sp|Q6NKX5|POT1B_ARATH	***-	Protection of telomeres protein 1b	IPR012340 (Nucleic acid-binding, OB-fold), IPR028389 (Protection of telomeres protein 1)	GO:0000723 (telomere maintenance), GO:0000784 (nuclear chromosome, telomeric region), GO:0003677 (DNA binding), GO:0043047 (single-stranded telomeric DNA binding)
Niben101Scf09387g00007.1	AT1G62770.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=204	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00174g00033.1	sp|Q9LHD1|AB15B_ARATH	*-*-	ABC transporter B family member 15	IPR011527 (ABC transporter type 1, transmembrane domain)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Ctg06563g00001.1	AT1G64830.1	***-	Eukaryotic aspartyl protease family protein LENGTH=431	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01797g01005.1	gb|KEH34672.1|	*-*-	F-box/LRR protein [Medicago truncatula]	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05188g03031.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03396g01002.1	sp|Q9LVC3|PUM12_ARATH	***-	Pumilio homolog 12	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf04096g12003.1	gb|ABV68563.1|	*-*-	A9 protein [Brassica napus]	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02785g00011.1	gb|KEH29863.1|	*-*-	methyltransferase type 11 [Medicago truncatula]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf02031g08011.1	AT3G26560.1	****	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR012340 (Nucleic acid-binding, OB-fold), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf00780g02006.1			Unknown protein		
Niben101Scf07147g02007.1	sp|A8IMG3|RL28_AZOC5	--*-	50S ribosomal protein L28	IPR001383 (Ribosomal protein L28), IPR026569 (Ribosomal protein L28/L24)	
Niben101Ctg02267g00001.1	gb|KEH33178.1|	*-*-	leguminosin group485 secreted peptide [Medicago truncatula]		
Niben101Scf21560g01016.1	AT1G72820.1	***-	Mitochondrial substrate carrier family protein LENGTH=349	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf02864g06008.1	sp|Q942D4|BURP3_ORYSJ	*-*-	BURP domain-containing protein 3	IPR004873 (BURP domain)	
Niben101Scf03734g02008.1			Unknown protein		
Niben101Scf24435g00001.1	sp|Q9FRS6|PXL1_ARATH	--*-	Leucine-rich repeat receptor-like protein kinase PXL1		
Niben101Scf39536g00003.1	sp|Q2ST48|RPOB_MYCCT	*-**	DNA-directed RNA polymerase subunit beta	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf04998g01010.1	AT5G38470.1	****	Rad23 UV excision repair protein family LENGTH=378	IPR004806 (UV excision repair protein Rad23), IPR009060 (UBA-like), IPR029071 (Ubiquitin-related domain)	GO:0003684 (damaged DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006289 (nucleotide-excision repair), GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
Niben101Scf01192g05012.1	sp|Q0WPZ6|PP158_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05038g00009.1	gb|ABA99135.2|	***-	seed maturation protein PM23, putative, expressed [Oryza sativa Japonica Group]	IPR008479 (Protein of unknown function DUF760)	
Niben101Scf21409g00008.1	AT1G70000.1	*-*-	myb-like transcription factor family protein LENGTH=261	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04813g02013.1	sp|O76021|RL1D1_HUMAN	*-*-	Ribosomal L1 domain-containing protein 1	IPR016094 (Ribosomal protein L1, 2-layer alpha/beta-sandwich), IPR016095 (Ribosomal protein L1, 3-layer alpha/beta-sandwich), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding)
Niben101Scf08263g03008.1	sp|Q9LT79|PUB25_ARATH	*-*-	U-box domain-containing protein 25	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf01773g03001.1	sp|Q9NUP7|TRM13_HUMAN	****	tRNA:m(4)X modification enzyme TRM13 homolog	IPR007871 (Methyltransferase TRM13), IPR021721 (Zinc finger, CCCH-type, TRM13), IPR022776 (TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain)	GO:0008033 (tRNA processing), GO:0008168 (methyltransferase activity)
Niben101Scf08753g00012.1	sp|Q3ED78|C3H7_ARATH	***-	Zinc finger CCCH domain-containing protein 7	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Ctg16063g00004.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00574g03004.1	sp|P24922|IF5A2_NICPL	****	Eukaryotic translation initiation factor 5A-2	IPR001884 (Translation elongation factor IF5A)	GO:0003723 (RNA binding), GO:0003746 (translation elongation factor activity), GO:0006452 (translational frameshifting), GO:0043022 (ribosome binding), GO:0045901 (positive regulation of translational elongation), GO:0045905 (positive regulation of translational termination)
Niben101Scf02444g00018.1	sp|A4RN08|MPH1_MAGO7	*-**	ATP-dependent DNA helicase MPH1	IPR006935 (Helicase/UvrB domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0016787 (hydrolase activity)
Niben101Scf02631g01016.1	AT2G15570.2	***-	Thioredoxin superfamily protein LENGTH=174	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf05918g03002.1	AT4G14000.1	***-	Putative methyltransferase family protein LENGTH=290	IPR019410 (Nicotinamide N-methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00426g01003.1	sp|Q5GSS3|SYI_WOLTR	****	Isoleucine--tRNA ligase	IPR002301 (Isoleucine-tRNA ligase), IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)	GO:0000166 (nucleotide binding), GO:0002161 (aminoacyl-tRNA editing activity), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004822 (isoleucine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006428 (isoleucyl-tRNA aminoacylation)
Niben101Scf02190g03008.1	sp|Q83DD0|SYV_COXBU	****	Valine--tRNA ligase	IPR002303 (Valine-tRNA ligase), IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding), IPR010978 (tRNA-binding arm)	GO:0000166 (nucleotide binding), GO:0002161 (aminoacyl-tRNA editing activity), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004832 (valine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006438 (valyl-tRNA aminoacylation)
Niben101Scf00465g04001.1			Unknown protein		
Niben101Scf18121g00019.1	AT3G47570.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=1010	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf01164g00005.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR003959 (ATPase, AAA-type, core), IPR008543 (Uncharacterised protein family Ycf2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf06916g00001.1	sp|Q8EGH8|GLND_SHEON	--*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf00854g11094.1	gb|ACM46775.1|	--*-	matR [Abies sibirica]		
Niben101Scf11891g01020.1			Unknown protein		
Niben101Scf18156g00013.1	AT1G33500.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=276		
Niben101Scf09825g00017.1	sp|O65555|Y4094_ARATH	*-*-	BTB/POZ domain-containing protein		
Niben101Scf01958g06002.1			Unknown protein		
Niben101Scf09442g02010.1	AT2G17080.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=263	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf09130g03018.1	AT1G72820.1	***-	Mitochondrial substrate carrier family protein LENGTH=349	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf02687g00005.1	sp|Q6NPT8|PP2B1_ARATH	***-	F-box protein PP2-B1	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf00189g00004.1	sp|Q06967|14336_ORYSJ	***-	14-3-3-like protein GF14-F	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf06252g01021.1			Unknown protein		
Niben101Scf03502g00005.1	emb|CDY44055.1|	***-	BnaA08g15510D [Brassica napus]		
Niben101Ctg14686g00003.1	AT1G13920.1	*-*-	Remorin family protein LENGTH=345	IPR005516 (Remorin, C-terminal)	
Niben101Scf00985g04006.1	sp|Q66GR3|BH130_ARATH	***-	Transcription factor bHLH130	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf09665g01003.1	sp|O49006|PME3_ARATH	****	Pectinesterase/pectinesterase inhibitor 3	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf03679g00007.1	gb|KFB84484.1|	****	ABC transporter ATP-binding protein [Calothrix sp. 336/3]	IPR010230 (FeS cluster assembly SUF system, ATPase SufC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016887 (ATPase activity)
Niben101Scf07015g00011.1	AT3G04470.1	***-	Ankyrin repeat family protein LENGTH=640	IPR020683 (Ankyrin repeat-containing domain), IPR021832 (Ankyrin repeat domain-containing protein 13)	GO:0005515 (protein binding)
Niben101Scf00883g15001.1	dbj|BAO49722.1|	*-**	nuclear pore complex protein Nup188a [Nicotiana benthamiana]	IPR021827 (Nucleoporin Nup186/Nup192/Nup205)	GO:0005643 (nuclear pore)
Niben101Scf29273g00001.1	AT2G38970.1	****	Zinc finger (C3HC4-type RING finger) family protein LENGTH=692	IPR002035 (von Willebrand factor, type A), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01066g05013.1	sp|B8I7Z5|RL18_CLOCE	***-	50S ribosomal protein L18	IPR005484 (Ribosomal protein L18/L5)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf11891g00004.1	AT2G21860.1	*-*-	violaxanthin de-epoxidase-related LENGTH=522		
Niben101Scf04220g05015.1	AT3G21810.1	***-	Zinc finger C-x8-C-x5-C-x3-H type family protein LENGTH=437	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf03584g06021.1	sp|O22820|U74F1_ARATH	--*-	UDP-glycosyltransferase 74F1		
Niben101Scf08690g02001.1	AT3G61770.1	***-	Acid phosphatase/vanadium-dependent haloperoxidase-related protein LENGTH=284	IPR003832 (Acid phosphatase/vanadium-dependent haloperoxidase-related)	
Niben101Scf07981g01015.1	AT2G27930.1	***-	PLATZ transcription factor family protein LENGTH=189	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf08721g01024.1			Unknown protein		
Niben101Scf12919g00012.1	AT4G34135.1	*-*-	UDP-glucosyltransferase 73B2 LENGTH=483	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00435g01006.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03852g00023.1	sp|O31156|PHNX_BACCE	--*-	Phosphonoacetaldehyde hydrolase		
Niben101Scf03374g07014.1	AT4G22770.1	***-	AT hook motif DNA-binding family protein LENGTH=334	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf01478g07013.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf02819g04001.1	emb|CDY39633.1|	***-	BnaC05g11620D [Brassica napus]	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf31796g00002.1	sp|A7A179|ATG26_YEAS7	*-*-	Sterol 3-beta-glucosyltransferase	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Ctg11154g00003.1	sp|P77966|GYRB_SYNY3	*-**	DNA gyrase subunit B	IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0003677 (DNA binding), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0006265 (DNA topological change)
Niben101Scf09116g03003.1	ref|XP_002869579.1|	****	rab GTPase activator [Arabidopsis lyrata subsp. lyrata] gb|EFH45838.1| rab GTPase activator [Arabidopsis lyrata subsp. lyrata]	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf03842g05003.1	emb|CDY09925.1|	***-	BnaC08g45260D [Brassica napus]		
Niben101Scf03481g01034.1	AT2G36670.1	***-	Eukaryotic aspartyl protease family protein LENGTH=512	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Ctg14063g00003.1	sp|Q05AL1|ARMC8_DANRE	--*-	Armadillo repeat-containing protein 8	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf10900g02008.1	AT3G44610.1	****	Protein kinase superfamily protein LENGTH=451	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain), IPR011009 (Protein kinase-like domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004871 (signal transducer activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02832g01021.1	sp|Q9FGQ7|CCD32_ARATH	***-	Cyclin-D3-2	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf05341g02004.1	ref|XP_002513199.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF49190.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01579g01046.1	sp|Q9LQQ4|H2B1_ARATH	***-	Histone H2B.1	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf02122g00006.1	sp|Q8RY89|PI5K8_ARATH	****	Phosphatidylinositol 4-phosphate 5-kinase 8	IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf08653g06019.1	gb|AFW04224.1|	****	phosphoethanolamine N-methyl transferase [Suaeda maritima]	IPR025771 (Phosphoethanolamine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0000234 (phosphoethanolamine N-methyltransferase activity), GO:0006656 (phosphatidylcholine biosynthetic process), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf13455g01002.1	sp|Q8LDC8|ERF92_ARATH	*-**	Ethylene-responsive transcription factor 1B	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01435g01001.1	AT5G50400.1	****	purple acid phosphatase 27 LENGTH=611	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf23942g00005.1			Unknown protein		
Niben101Scf05972g02008.1	sp|Q8W108|MTND3_ARATH	****	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3	IPR004313 (Acireductone dioxygenase ARD family)	GO:0010309 (acireductone dioxygenase [iron(II)-requiring] activity), GO:0016491 (oxidoreductase activity), GO:0019509 (L-methionine biosynthetic process from methylthioadenosine), GO:0055114 (oxidation-reduction process)
Niben101Scf02171g00001.1	sp|A2BN38|RS12_HYPBU	****	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf03191g01007.1	gb|ABV21218.1|	***-	[Arabidopsis thaliana]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf01107g00011.1	sp|Q86VZ2|WDR5B_HUMAN	***-	WD repeat-containing protein 5B	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03245g07014.1	AT4G16110.1	*-*-	response regulator 2 LENGTH=664	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05776g01049.1	ref|XP_002530829.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF31542.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01640g03006.1	ref|XP_002526600.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35759.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07477g01007.1	AT5G05987.1	***-	prenylated RAB acceptor 1.A2 LENGTH=209	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf06090g02010.1	AT1G70940.1	***-	Auxin efflux carrier family protein LENGTH=640	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf07005g00013.1	gb|KEH26436.1|	****	APO RNA-binding protein [Medicago truncatula]	IPR023342 (APO domain)	GO:0003723 (RNA binding)
Niben101Scf01339g04007.1	sp|P93227|FNTA_SOLLC	*-**	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	IPR002088 (Protein prenyltransferase, alpha subunit), IPR016129 (Peptidase C14, ICE, catalytic subunit p20, active site)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0008318 (protein prenyltransferase activity), GO:0018342 (protein prenylation)
Niben101Scf15993g00012.1	sp|Q9CA64|PRE3_ARATH	***-	Transcription factor PRE3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	
Niben101Scf05379g00001.1	AT4G13850.1	*-**	glycine-rich RNA-binding protein 2 LENGTH=158	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf08470g06007.1	sp|O22527|CLH1_ARATH	****	Chlorophyllase-1	IPR010821 (Chlorophyllase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0015996 (chlorophyll catabolic process), GO:0047746 (chlorophyllase activity)
Niben101Scf03934g01017.1			Unknown protein		
Niben101Scf05404g07001.1	sp|Q9M331|PTR45_ARATH	*-*-	Protein NRT1/ PTR FAMILY 5.7	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf11978g03001.1	sp|D5CZH1|RUTB_ECOKI	***-	Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB	IPR000868 (Isochorismatase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf12289g01012.1	AT4G01590.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) . LENGTH=200	IPR024661 (DNA-directed RNA polymerase III, subunit Rpc31)	
Niben101Scf04236g00015.1	ref|NP_001056841.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf20325g00012.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf05689g02018.1	AT2G07671.1	****	ATP synthase subunit C family protein LENGTH=85	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf28369g01004.1	sp|Q54DA7|RAB4_DICDI	*-*-	Ras-related protein Rab-4	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf04754g03009.1	AT2G42900.1	***-	Plant basic secretory protein (BSP) family protein LENGTH=276	IPR007541 (Uncharacterised protein family, basic secretory protein)	
Niben101Scf10241g03009.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06190g05003.1	AT3G02645.1	***-	Plant protein of unknown function (DUF247) LENGTH=529	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf02074g00059.1	sp|Q04716|RT03_PETHY	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf15993g00011.1	AT5G62550.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43; Bacteria - 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses - 55; Other Eukaryotes - 5075 (source: NCBI BLink). LENGTH=487		
Niben101Scf09742g00018.1	sp|Q8NFH3|NUP43_HUMAN	*-*-	Nucleoporin Nup43	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01706g00022.1	sp|Q3UIK4|MET14_MOUSE	*-**	N6-adenosine-methyltransferase subunit METTL14	IPR007757 (MT-A70-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006139 (nucleobase-containing compound metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf18308g00011.1	gb|AEW48200.1|	*-*-	disease resistance protein RGH7 [Solanum x edinense]		
Niben101Scf00262g00002.1	sp|Q9FLJ4|PP440_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02107g06002.1	sp|Q9SIT5|CHX15_ARATH	****	Cation/H(+) antiporter 15	IPR006153 (Cation/H+ exchanger), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03009g05016.1			Unknown protein	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf05283g00010.1			Unknown protein		
Niben101Scf03245g06003.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03129g03012.1	gb|EMS51705.1|	***-	Universal stress protein A-like protein [Triticum urartu]	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	
Niben101Scf06976g01002.1	AT1G15870.1	****	Mitochondrial glycoprotein family protein LENGTH=242	IPR003428 (Mitochondrial glycoprotein)	GO:0005759 (mitochondrial matrix)
Niben101Scf00571g09002.1	sp|O74476|IMB3_SCHPO	*-*-	Importin subunit beta-3	IPR007598 (Protein of unknown function DUF577), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf05710g02007.1	sp|P81393|MYB08_ANTMA	***-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02261g01002.1	sp|Q948U0|RBOHA_SOLTU	*-**	Respiratory burst oxidase homolog protein A	IPR000778 (Cytochrome b245, heavy chain), IPR011992 (EF-hand domain pair), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0004601 (peroxidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0050664 (oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf01105g01020.1	sp|O62255|DCP2_CAEEL	*-*-	mRNA-decapping enzyme 2	IPR007722 (mRNA decapping protein 2, Box A), IPR015797 (NUDIX hydrolase domain-like)	GO:0003723 (RNA binding), GO:0016787 (hydrolase activity), GO:0030145 (manganese ion binding)
Niben101Scf01472g03007.1	sp|Q8C5N5|PDD2L_MOUSE	--*-	Programmed cell death protein 2-like		
Niben101Scf06050g02002.1	sp|Q7UUZ7|FTSH1_RHOBA	*-**	ATP-dependent zinc metalloprotease FtsH 1	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf06249g03014.1	sp|Q3T134|SPCS1_BOVIN	--**	Signal peptidase complex subunit 1	IPR009542 (Microsomal signal peptidase 12kDa subunit)	GO:0005787 (signal peptidase complex), GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf02044g13009.1	AT1G56050.1	****	GTP-binding protein-related LENGTH=421	IPR004396 (Ribosome-binding ATPase YchF/Obg-like ATPase 1), IPR012675 (Beta-grasp domain), IPR023192 (TGS-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf03417g00007.1	ref|NP_001052935.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf08030g04004.1	sp|B3DU32|GATA_BIFLD	***-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf13917g00003.1			Unknown protein		
Niben101Scf20283g00004.1	sp|Q65KJ5|FOSB_BACLD	-**-	Metallothiol transferase FosB	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf11355g00009.1	sp|Q9LFT1|TBL21_ARATH	*-*-	Protein trichome birefringence-like 21	IPR026057 (PC-Esterase)	
Niben101Scf17511g00001.1	gb|ABI34321.1|	*-*-	RNase H family protein [Solanum demissum]		
Niben101Scf03245g08016.1	sp|P22506|BGL1_SACFI	***-	Beta-glucosidase 1	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01752g10004.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf02285g01027.1	sp|B2I9B2|MURC_XYLF2	****	UDP-N-acetylmuramate--L-alanine ligase	IPR005758 (UDP-N-acetylmuramate-alanine ligase), IPR016040 (NAD(P)-binding domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008360 (regulation of cell shape), GO:0008763 (UDP-N-acetylmuramate-L-alanine ligase activity), GO:0009058 (biosynthetic process), GO:0016874 (ligase activity), GO:0051301 (cell division)
Niben101Scf00010g03005.1	sp|O42993|FKBP_SCHPO	-**-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf09710g00032.1			Unknown protein		
Niben101Scf01538g05003.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13198g00002.1	tpg|DAA45226.1|	--**	TPA: putative DNA-directed RNA polymerase family protein [Zea mays]	IPR015699 (DNA-directed RNA pol I, largest subunit)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf00964g05018.1	emb|CAE04764.3|	*-*-	OSJNBa0079C19.5 [Oryza sativa Japonica Group]		
Niben101Scf03241g00013.1	sp|Q6SZ87|NAT11_ARATH	****	Nucleobase-ascorbate transporter 11	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf08199g02018.1	sp|Q28EX7|MARH2_XENTR	--*-	E3 ubiquitin-protein ligase MARCH2	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf02610g01008.1			Unknown protein		
Niben101Scf01508g01023.1	sp|Q5SLR3|ODBB_THET8	--*-	2-oxoisovalerate dehydrogenase subunit beta	IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01172g06007.1	sp|Q4P331|IF4A_USTMA	*-*-	ATP-dependent RNA helicase eIF4A	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf38186g00005.1	AT5G13020.1	***-	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein LENGTH=397	IPR005491 (EMSY N-terminal)	
Niben101Scf12718g00005.1	ref|XP_007038720.1|	***-	Chloroplast thylakoid membrane, putative isoform 1 [Theobroma cacao] gb|EOY23221.1| Chloroplast thylakoid membrane, putative isoform 1 [Theobroma cacao]		
Niben101Scf00319g00006.1	gb|ABZ05121.1|	*-*-	CPR5, partial [Arabidopsis thaliana]		
Niben101Scf02784g00010.1	sp|A5G9B6|NUOD_GEOUR	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00652g01004.1	AT5G27930.1	*-*-	Protein phosphatase 2C family protein LENGTH=373	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf05838g00002.1	ref|XP_002516844.1|	-**-	copper ion binding protein, putative [Ricinus communis] gb|EEF45458.1| copper ion binding protein, putative [Ricinus communis]		
Niben101Scf04989g02003.1	sp|Q7Q9C0|ENOPH_ANOGA	*-*-	Enolase-phosphatase E1	IPR001303 (Class II aldolase/adducin N-terminal), IPR017714 (Methylthioribulose-1-phosphate dehydratase), IPR023214 (HAD-like domain), IPR023943 (Enolase-phosphatase E1), IPR027505 (Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1)	GO:0000287 (magnesium ion binding), GO:0005737 (cytoplasm), GO:0019509 (L-methionine biosynthetic process from methylthioadenosine), GO:0043874 (acireductone synthase activity), GO:0046872 (metal ion binding)
Niben101Scf02537g14004.1	AT1G34750.1	***-	Protein phosphatase 2C family protein LENGTH=282	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf02605g03002.1	sp|Q8L6Y1|UBP14_ARATH	*-**	Ubiquitin carboxyl-terminal hydrolase 14	IPR009060 (UBA-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016652 (Ubiquitinyl hydrolase), IPR028889 (Ubiquitin specific protease domain)	GO:0005515 (protein binding), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0008242 (omega peptidase activity), GO:0008270 (zinc ion binding), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf03506g03009.1	AT4G12700.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=561		
Niben101Scf10067g00009.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03832g02004.1	sp|Q9SG02|RDR6_ARATH	****	RNA-dependent RNA polymerase 6	IPR007855 (RNA-dependent RNA polymerase, eukaryotic-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003968 (RNA-directed RNA polymerase activity)
Niben101Scf02631g01015.1	ref|WP_027830635.1|	***-	methylcrotonoyl-CoA carboxylase [Marinobacter sp. HL-58]	IPR029045 (ClpP/crotonase-like domain)	GO:0016874 (ligase activity)
Niben101Scf02353g06007.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf06890g00001.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02793g11005.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf00315g00003.1	sp|P93011|PP182_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01764g03017.1	sp|P46824|KLC_DROME	*-*-	Kinesin light chain	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02132g02009.1	sp|Q9C519|WRKY6_ARATH	*-**	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg14776g00003.1			Unknown protein		
Niben101Scf05732g01010.1	sp|Q8BJ56|PLPL2_MOUSE	*-*-	Patatin-like phospholipase domain-containing protein 2	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf02026g03009.1	gb|ABY88506.1|	--*-	NHL1, partial [Arabidopsis thaliana]		
Niben101Scf06077g03002.1	sp|P34102|PK3_DICDI	*-**	Protein kinase 3	IPR006567 (PUG domain), IPR010513 (KEN domain), IPR011009 (Protein kinase-like domain)	GO:0004540 (ribonuclease activity), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006397 (mRNA processing), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09907g00006.1	sp|B1KQN1|RSMF_SHEWM	--**	Ribosomal RNA small subunit methyltransferase F	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf00313g01001.1	sp|Q08507|ACCO3_PETHY	***-	1-aminocyclopropane-1-carboxylate oxidase 3	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf07147g02008.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf00851g05004.1	AT1G04580.1	***-	aldehyde oxidase 4 LENGTH=1337	IPR012675 (Beta-grasp domain), IPR016166 (FAD-binding, type 2), IPR016208 (Aldehyde oxidase/xanthine dehydrogenase)	GO:0003824 (catalytic activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0046872 (metal ion binding), GO:0050660 (flavin adenine dinucleotide binding), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08326g00023.1	gb|KEH39727.1|	***-	ABIL1-like protein [Medicago truncatula]	IPR028457 (ABI family)	
Niben101Scf06423g03028.1	sp|Q8R3G1|PP1R8_MOUSE	*-*-	Nuclear inhibitor of protein phosphatase 1	IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf00822g03008.1	AT2G37980.1	***-	O-fucosyltransferase family protein LENGTH=638	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf22566g00023.1	sp|Q9LJQ9|CX171_ARATH	****	Cytochrome c oxidase copper chaperone 1	IPR007745 (Cytochrome c oxidase copper chaperone), IPR009069 (Cysteine alpha-hairpin motif superfamily)	GO:0005507 (copper ion binding), GO:0005758 (mitochondrial intermembrane space), GO:0006825 (copper ion transport), GO:0016531 (copper chaperone activity)
Niben101Scf02623g00007.1	sp|Q8L6J5|RPO1B_TOBAC	****	DNA-directed RNA polymerase 1B, mitochondrial	IPR002092 (DNA-directed RNA polymerase, phage-type), IPR024075 (DNA-directed RNA polymerase, helix hairpin domain), IPR029262 (DNA-directed RNA polymerase N-terminal domain)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf00484g01005.1	sp|P46302|RS28_MAIZE	***-	40S ribosomal protein S28	IPR000289 (Ribosomal protein S28e), IPR028626 (Ribosomal protein S28e conserved site)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02864g11003.1	sp|Q9XHE4|RL37A_GOSHI	***-	60S ribosomal protein L37a	IPR002674 (Ribosomal protein L37ae), IPR011332 (Zinc-binding ribosomal protein)	
Niben101Scf06625g02002.1	sp|O42931|PRS7_SCHPO	*-*-	26S protease regulatory subunit 7 homolog	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf08724g02009.1	sp|Q9MB58|F26_ARATH	****	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase	IPR001345 (Phosphoglycerate/bisphosphoglycerate mutase, active site), IPR013783 (Immunoglobulin-like fold), IPR013784 (Carbohydrate-binding-like fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0003873 (6-phosphofructo-2-kinase activity), GO:0004331 (fructose-2,6-bisphosphate 2-phosphatase activity), GO:0005524 (ATP binding), GO:0006000 (fructose metabolic process), GO:0006003 (fructose 2,6-bisphosphate metabolic process), GO:0008152 (metabolic process), GO:0030246 (carbohydrate binding), GO:2001070 (starch binding)
Niben101Scf01045g00020.1	AT1G13700.1	*-*-	6-phosphogluconolactonase 1 LENGTH=268	IPR006148 (Glucosamine/galactosamine-6-phosphate isomerase)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf01933g07001.1	AT5G65910.1	***-	BSD domain-containing protein LENGTH=432	IPR005607 (BSD)	
Niben101Scf05118g08013.1	sp|Q9XEA8|CYSK2_ORYSJ	****	Cysteine synthase	IPR005856 (Cysteine synthase K/M)	GO:0004124 (cysteine synthase activity), GO:0006535 (cysteine biosynthetic process from serine)
Niben101Scf02582g05006.1	gb|KEH22373.1|	--*-	DUF4283 domain protein [Medicago truncatula]		
Niben101Scf03487g00012.1			Unknown protein		
Niben101Scf02517g09005.1	gb|ABB47928.2|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf10707g00015.1	AT3G17090.1	****	Protein phosphatase 2C family protein LENGTH=384	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf01481g02015.1	sp|O49118|H2B_CAPAN	***-	Histone H2B	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf01949g00003.1	gb|AFI44305.1|	*-*-	DNA polymerase (mitochondrion) [Silene vulgaris]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf03410g01011.1	sp|Q32PE9|LSM3_BOVIN	***-	U6 snRNA-associated Sm-like protein LSm3	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf00206g00017.1	AT3G21295.1	***-	Tudor/PWWP/MBT superfamily protein LENGTH=645	IPR000313 (PWWP domain)	
Niben101Scf06125g00001.1	sp|P33927|CCMF_ECOLI	--**	Cytochrome c-type biogenesis protein CcmF	IPR003567 (Cytochrome c-type biogenesis protein)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf10509g02005.1	AT1G11360.1	***-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=242	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf08000g00005.1	sp|Q9SAK8|CHX2_ARATH	****	Cation/H(+) antiporter 2	IPR006153 (Cation/H+ exchanger), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf19148g00005.1	sp|Q4VSI4|UBP7_RAT	*-**	Ubiquitin carboxyl-terminal hydrolase 7	IPR008974 (TRAF-like), IPR028889 (Ubiquitin specific protease domain)	GO:0005515 (protein binding), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf02793g25012.1	sp|Q7F8R0|C3H14_ORYSJ	*-*-	Zinc finger CCCH domain-containing protein 14	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf39265g00001.1	sp|B2A5W1|PUR9_NATTJ	--*-	Bifunctional purine biosynthesis protein PurH		
Niben101Scf00321g03014.1	sp|Q9XIA7|TOM6_ARATH	*-*-	Mitochondrial import receptor subunit TOM6 homolog		
Niben101Scf06183g00004.1	sp|Q9S7R3|LSH10_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	IPR006936 (ALOG domain)	
Niben101Scf06100g02029.1	AT2G35585.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=156		
Niben101Scf03878g02007.1	sp|Q7ZUQ3|STK3_DANRE	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01290g01011.1	sp|Q8L5T5|LBD15_ARATH	***-	LOB domain-containing protein 15	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf04110g00011.1	ref|WP_011058979.1|	-**-	MULTISPECIES: hypothetical protein [Pseudomonas fluorescens group] ref|YP_257753.1| hypothetical protein PFL_0611 [Pseudomonas protegens Pf-5] ref|YP_007997921.1| hypothetical protein PFLCHA0_c06180 [Pseudomonas protegens CHA0] gb|AAY96018.1| conserved hypothetical protein [Pseudomonas protegens Pf-5] gb|AGL82417.1| hypothetical protein PFLCHA0_c06180 [Pseudomonas protegens CHA0]		
Niben101Scf07325g00028.1	AT1G03220.1	***-	Eukaryotic aspartyl protease family protein LENGTH=433	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05226g08017.1	AT5G52430.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=438		
Niben101Scf05188g03032.1	sp|Q94C77|RPKL_ARATH	--*-	Receptor protein kinase-like protein	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Scf05029g01001.1	sp|Q40410|MT2_NICPL	***-	Metallothionein-like protein type 2	IPR000347 (Metallothionein, family 15, plant)	GO:0046872 (metal ion binding)
Niben101Scf01948g01003.1	AT2G31880.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=641	IPR001611 (Leucine-rich repeat), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf04788g00023.1	sp|P30819|NADC_PSEAE	*-**	Nicotinate-nucleotide pyrophosphorylase [carboxylating]	IPR004393 (Nicotinate-nucleotide pyrophosphorylase)	GO:0003824 (catalytic activity), GO:0004514 (nicotinate-nucleotide diphosphorylase (carboxylating) activity), GO:0009435 (NAD biosynthetic process), GO:0016763 (transferase activity, transferring pentosyl groups), GO:0019363 (pyridine nucleotide biosynthetic process)
Niben101Scf17594g00006.1	AT4G31500.1	***-	cytochrome P450, family 83, subfamily B, polypeptide 1 LENGTH=499	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01154g16006.1	sp|Q7M443|CHIT2_TULBA	***-	Chitinase 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf02632g05001.1	AT5G15740.1	***-	O-fucosyltransferase family protein LENGTH=508	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf30168g00001.1	sp|A0A326|RPOC1_COFAR	*-**	DNA-directed RNA polymerase subunit beta'	IPR007080 (RNA polymerase Rpb1, domain 1)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf00063g01019.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01546g00012.1	AT2G44500.1	***-	O-fucosyltransferase family protein LENGTH=573	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf01940g00011.1	AT3G17860.1	***-	jasmonate-zim-domain protein 3 LENGTH=352	IPR010399 (Tify), IPR018467 (CO/COL/TOC1, conserved site)	
Niben101Scf01125g03027.1	sp|O23169|PP353_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf10329g03025.1	AT4G24370.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=164		
Niben101Scf01383g00009.1	sp|Q9ZQG9|E1314_ARATH	***-	Glucan endo-1,3-beta-glucosidase 14	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01374g03007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00349g06006.1	sp|Q946Y7|SYP61_ARATH	***-	Syntaxin-61	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport), GO:0048193 (Golgi vesicle transport)
Niben101Scf08462g01015.1	sp|Q22703|TFDP1_CAEEL	--*-	Transcription factor dpl-1		
Niben101Scf10547g00002.1	sp|Q9FK28|MEM12_ARATH	*-*-	Membrin-12		
Niben101Scf18268g00003.1	sp|Q3TX08|TRM1_MOUSE	****	tRNA (guanine(26)-N(2))-dimethyltransferase	IPR002905 (tRNA methyltransferase, Trm1), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0004809 (tRNA (guanine-N2-)-methyltransferase activity), GO:0008033 (tRNA processing)
Niben101Scf04797g00020.1	sp|Q9FL17|PUB40_ARATH	***-	U-box domain-containing protein 40	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf03455g02006.1			Unknown protein		
Niben101Scf03560g02001.1	AT1G19640.1	****	jasmonic acid carboxyl methyltransferase LENGTH=389	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf03757g05001.1	gb|KEH41854.1|	***-	START-2 domain protein [Medicago truncatula]	IPR023393 (START-like domain)	
Niben101Scf10058g00024.1	sp|Q84KG5|CCD_CROSA	***-	Carotenoid 9,10(9',10')-cleavage dioxygenase	IPR004294 (Carotenoid oxygenase)	
Niben101Scf02789g01004.1	sp|Q9C5S9|CRK6_ARATH	*-**	Cysteine-rich receptor-like protein kinase 6	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07129g00003.1	AT2G24420.1	*-*-	DNA repair ATPase-related LENGTH=440		
Niben101Scf15532g01008.1	ref|XP_002885363.1|	****	calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata] gb|EFH61622.1| calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata]	IPR000261 (EPS15 homology (EH)), IPR011992 (EF-hand domain pair), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005525 (GTP binding)
Niben101Scf00773g07001.1	AT2G40490.1	****	Uroporphyrinogen decarboxylase LENGTH=394	IPR006361 (Uroporphyrinogen decarboxylase HemE)	GO:0004853 (uroporphyrinogen decarboxylase activity), GO:0006779 (porphyrin-containing compound biosynthetic process)
Niben101Scf10369g01020.1	ref|XP_007052619.1|	-**-	UPF0182 protein jk1603, putative [Theobroma cacao] gb|EOX96776.1| UPF0182 protein jk1603, putative [Theobroma cacao]		
Niben101Scf15672g00006.1	sp|Q7M443|CHIT2_TULBA	***-	Chitinase 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02227g01008.1	sp|Q8GYL7|PP361_ARATH	*-*-	Pentatricopeptide repeat-containing protein At5g02830, chloroplastic		
Niben101Scf05300g02015.1	AT4G14090.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=456	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02627g01020.1	sp|Q67MJ2|LEUC_SYMTH	*-*-	3-isopropylmalate dehydratase large subunit	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf02077g12028.1	emb|CDX87277.1|	***-	BnaC09g05920D [Brassica napus]		
Niben101Scf02217g02021.1	sp|B6K2N0|NAR1_SCHJY	***-	Cytosolic Fe-S cluster assembly factor NAR1 homolog	IPR009016 (Iron hydrogenase)	
Niben101Scf02569g01001.1	sp|Q6PC62|SPG21_DANRE	***-	Maspardin	IPR026151 (Maspardin), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04673g01003.1	sp|Q9SWE7|VATE_CITLI	****	V-type proton ATPase subunit E	IPR002842 (ATPase, V1/A1 complex, subunit E)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf08156g07002.1	AT4G31390.1	*-*-	Protein kinase superfamily protein LENGTH=682	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03152g00014.1	emb|CDY28989.1|	*-*-	BnaC07g31950D [Brassica napus]		
Niben101Scf02423g02023.1	AT5G18750.1	*-*-	DNAJ heat shock N-terminal domain-containing protein LENGTH=884	IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf05030g04002.1	sp|Q9FWX2|NAC7_ARATH	***-	NAC domain-containing protein 7	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03015g06008.1	sp|Q05462|RL27_PEA	***-	60S ribosomal protein L27	IPR001141 (Ribosomal protein L27e), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01020g02011.1	sp|Q3T134|SPCS1_BOVIN	****	Signal peptidase complex subunit 1	IPR009542 (Microsomal signal peptidase 12kDa subunit)	GO:0005787 (signal peptidase complex), GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf08803g00005.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf10799g00002.1			Unknown protein		
Niben101Scf01849g03013.1	AT2G04410.1	***-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=73	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf00597g08017.1	sp|Q9FNC7|SUVR2_ARATH	*-**	Histone-lysine N-methyltransferase SUVR2	IPR018848 (WIYLD domain)	GO:0018024 (histone-lysine N-methyltransferase activity)
Niben101Scf00687g02014.1	sp|Q5R7R9|SNW1_PONAB	***-	SNW domain-containing protein 1	IPR017862 (SKI-interacting protein, SKIP)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf06687g03002.1	sp|Q9H7Z3|NRDE2_HUMAN	*-*-	Protein NRDE2 homolog	IPR011990 (Tetratricopeptide-like helical domain), IPR013633 (siRNA-mediated silencing protein NRDE-2)	GO:0005515 (protein binding)
Niben101Scf01236g05020.1	gb|AEW48196.1|	*-*-	disease resistance protein RGH7 [Solanum chacoense]		
Niben101Scf00339g03027.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf13289g02018.1	sp|Q5BCC6|BGLC_EMENI	*-*-	Beta-glucosidase C	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf12783g00003.1			Unknown protein		
Niben101Scf04375g06002.1	sp|A6LTR7|SYFA_CLOB8	*-**	Phenylalanine--tRNA ligase alpha subunit	IPR002319 (Phenylalanyl-tRNA synthetase), IPR005121 (Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding)	GO:0000049 (tRNA binding), GO:0000287 (magnesium ion binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004826 (phenylalanine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006432 (phenylalanyl-tRNA aminoacylation), GO:0008033 (tRNA processing), GO:0043039 (tRNA aminoacylation)
Niben101Scf06461g04015.1	AT3G13060.2	***-	evolutionarily conserved C-terminal region 5 LENGTH=634	IPR007275 (YTH domain)	
Niben101Scf00157g00006.1	gb|KGI59835.1|	*-*-	endoribonuclease L-PSP [Prevotella sp. S7 MS 2]	IPR013813 (Endoribonuclease L-PSP/chorismate mutase-like)	
Niben101Scf01478g02016.1			Unknown protein		
Niben101Scf00150g00008.1	sp|P29162|ASOL_TOBAC	***-	L-ascorbate oxidase homolog	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07850g06014.1	AT1G74350.1	*-*-	Intron maturase, type II family protein LENGTH=753		
Niben101Scf01633g00002.1	sp|O65896|CDA1_ARATH	****	Cytidine deaminase 1	IPR006263 (Cytidine deaminase, homodimeric)	GO:0003824 (catalytic activity), GO:0004126 (cytidine deaminase activity), GO:0008270 (zinc ion binding), GO:0009972 (cytidine deamination), GO:0016787 (hydrolase activity)
Niben101Scf01849g04001.1			Unknown protein		
Niben101Scf01941g00010.1	sp|Q2QZL4|U2A2B_ORYSJ	*-*-	Splicing factor U2af large subunit B	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf01764g01012.1	AT1G18530.1	****	EF hand calcium-binding protein family LENGTH=157	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00063g06034.1	sp|Q86VX9|MON1A_HUMAN	***-	Vacuolar fusion protein MON1 homolog A	IPR004353 (Vacuolar fusion protein MON1)	
Niben101Scf10092g00008.1			Unknown protein		
Niben101Scf01521g05005.1	sp|Q6EUP4|14335_ORYSJ	*-*-	14-3-3-like protein GF14-E	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf07687g02014.1	AT2G33380.1	***-	Caleosin-related family protein LENGTH=236	IPR007736 (Caleosin)	
Niben101Scf05146g04021.1	sp|Q2GI75|DNAJ_EHRCR	--*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf00927g08011.1	sp|Q91577|CY561_XENLA	*-*-	Cytochrome b561	IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf03870g00001.1	AT1G70280.2	***-	NHL domain-containing protein LENGTH=509	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf04915g05008.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf01237g04019.1	ref|XP_007008868.1|	***-	Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 4 [Theobroma cacao] gb|EOY17678.1| Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 4 [Theobroma cacao]		
Niben101Scf01009g02014.1	sp|Q54TV2|ABCG5_DICDI	*-*-	ABC transporter G family member 5	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00574g04009.1	emb|CDY16121.1|	*-*-	BnaC08g40020D [Brassica napus]	IPR008581 (Protein of unknown function DUF863, plant)	
Niben101Scf21873g00005.1	sp|Q7XT39|EXPB5_ORYSJ	***-	Expansin-B5	IPR007117 (Expansin, cellulose-binding-like domain), IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf06087g02007.1	AT1G68170.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=356	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf03990g02009.1			Unknown protein		
Niben101Scf03930g03001.1	sp|Q9CAM8|PP100_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04614g07006.1	AT4G27510.1	***-	unknown protein; Has 25 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=728		
Niben101Scf04979g02002.1	AT5G50760.1	***-	SAUR-like auxin-responsive protein family LENGTH=183	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00063g02016.1	sp|B0R8D0|RS7_HALS3	*-*-	30S ribosomal protein S7	IPR000235 (Ribosomal protein S5/S7), IPR023798 (Ribosomal protein S7 domain)	GO:0006412 (translation)
Niben101Scf01718g08029.1	sp|P69103|GBLP_TRYBB	*-**	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02266g01010.1	emb|CDX74341.1|	***-	BnaA03g27060D [Brassica napus]		
Niben101Ctg04390g00002.1	AT4G38840.1	***-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf20773g00006.1	sp|B6SGC5|CNR6_MAIZE	*-*-	Cell number regulator 6	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf01171g06004.1	sp|A1RSE1|RL13_PYRIL	****	50S ribosomal protein L13	IPR005822 (Ribosomal protein L13), IPR023563 (Ribosomal protein L13, conserved site), IPR023564 (Ribosomal protein L13 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf01795g09009.1	AT1G19025.1	***-	DNA repair metallo-beta-lactamase family protein LENGTH=549	IPR001279 (Beta-lactamase-like), IPR011084 (DNA repair metallo-beta-lactamase)	
Niben101Scf04738g03002.1			Unknown protein		
Niben101Scf02290g08001.1	AT5G53390.1	****	O-acyltransferase (WSD1-like) family protein LENGTH=486	IPR004255 (O-acyltransferase, WSD1, N-terminal), IPR009721 (O-acyltransferase, WSD1, C-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity), GO:0045017 (glycerolipid biosynthetic process)
Niben101Scf13857g00016.1	sp|Q9ZTW3|VA721_ARATH	****	Vesicle-associated membrane protein 721	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf01125g02013.1	AT2G35100.1	***-	Exostosin family protein LENGTH=447	IPR004263 (Exostosin-like)	
Niben101Scf03306g01011.1	emb|CDY20313.1|	***-	BnaC04g36430D [Brassica napus]		
Niben101Scf01111g02001.1	sp|Q94ID6|ERF81_ARATH	--**	Ethylene-responsive transcription factor 12	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02228g02012.1	AT5G60800.2	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=302	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf02995g01001.1	sp|Q39263|ZFP4_ARATH	***-	Zinc finger protein 4	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf03867g00010.1	sp|O82176|EXOL7_ARATH	***-	Protein EXORDIUM-like 7	IPR006766 (Phosphate-induced protein 1)	
Niben101Ctg12593g00001.1	sp|Q6L1M5|SYM_PICTO	*-**	Methionine--tRNA ligase	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0000049 (tRNA binding)
Niben101Scf30733g00001.1	gb|AGY62799.1|	--*-	orf148 (mitochondrion) [Eruca vesicaria subsp. sativa] gb|AHY20342.1| hypothetical protein (mitochondrion) (mitochondrion) [Brassica juncea var. tumida] gb|AIC83308.1| orf148 (mitochondrion) [Brassica oleracea var. botrytis]		
Niben101Scf06976g08003.1	gb|AAG31017.1|	*-*-	tospovirus resistance protein E [Solanum lycopersicum]		
Niben101Scf01371g04004.1	AT1G45160.2	****	Protein kinase superfamily protein LENGTH=1067	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09363g00017.1			Unknown protein		
Niben101Scf13289g00011.1	AT1G76640.1	****	Calcium-binding EF-hand family protein LENGTH=159	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf14374g00005.1	ref|WP_022380235.1|	--*-	glycosyl transferase [Ruminococcus sp. CAG:9] emb|CDD80135.1| glycosyl transferase [Ruminococcus sp. CAG:9]		
Niben101Scf03917g00017.1	sp|A8GZJ0|RHLB_SHEPA	*-**	ATP-dependent RNA helicase RhlB	IPR004589 (DNA helicase, ATP-dependent, RecQ type), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0006310 (DNA recombination), GO:0008026 (ATP-dependent helicase activity), GO:0043140 (ATP-dependent 3'-5' DNA helicase activity), GO:0044237 (cellular metabolic process)
Niben101Scf03528g03009.1	ref|WP_024531762.1|	--*-	DNA-binding protein [Streptococcus suis]	IPR010298 (Protein of unknown function DUF901)	
Niben101Scf05920g00006.1	sp|Q94DE2|BD31A_ORYSJ	***-	Protein BUD31 homolog 1	IPR001748 (G10 protein)	GO:0005634 (nucleus)
Niben101Scf04893g01008.1	ref|XP_002869709.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH45968.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf05430g00005.1	ref|XP_003597695.1|	-**-	Early nodulin-like protein [Medicago truncatula]	IPR008972 (Cupredoxin)	
Niben101Scf03154g03001.1	sp|B1L938|RL1_THESQ	****	50S ribosomal protein L1	IPR016095 (Ribosomal protein L1, 3-layer alpha/beta-sandwich), IPR023673 (Ribosomal protein L1, conserved site), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf07386g00024.1	sp|Q9SA38|OCT3_ARATH	****	Organic cation/carnitine transporter 3	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02513g01020.1	sp|C1EYK0|ATKB_BACC3	***-	Potassium-transporting ATPase B chain	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf06621g02006.1	sp|Q94JM3|ARFB_ARATH	****	Auxin response factor 2	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf15390g00003.1	AT3G45610.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=245	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04987g00015.1	sp|Q10LJ2|MTP2_ORYSJ	--*-	Metal tolerance protein 2		
Niben101Scf01379g00004.1	sp|Q14591|ZN271_HUMAN	--*-	Zinc finger protein 271	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf14282g00007.1	sp|A0Q1R3|DNAJ_CLONN	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf15532g01007.1	emb|CDX82254.1|	***-	BnaA03g35670D [Brassica napus]	IPR021924 (Protein of unknown function DUF3537)	
Niben101Scf18551g00010.1	sp|P57735|RAB25_HUMAN	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf12364g00010.1			Unknown protein		
Niben101Scf08134g02006.1	sp|Q9H875|PKRI1_HUMAN	--*-	PRKR-interacting protein 1	IPR009548 (Protein of unknown function DUF1168)	
Niben101Scf09559g03002.1	dbj|BAB88877.1|	--*-	late embryogenesis-abundant protein [Brassica napus]		
Niben101Scf03871g04014.1	sp|Q313W4|GLMU_DESAG	--*-	Bifunctional protein GlmU		
Niben101Scf06369g01002.1	AT5G37350.1	****	Serine/threonine-protein kinase Rio1 LENGTH=531	IPR017407 (Serine/threonine-protein kinase Rio1)	GO:0003824 (catalytic activity), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07515g02006.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR021720 (Malectin)	GO:0005515 (protein binding)
Niben101Scf03653g00003.1	emb|CDX69444.1|	--*-	BnaA10g17930D [Brassica napus]		
Niben101Scf03690g00017.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04861g01010.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12872g00011.1	sp|P39702|VPS8_YEAST	--*-	Vacuolar protein sorting-associated protein 8		
Niben101Scf08863g01013.1	sp|Q87VK2|RLMB_PSESM	*-**	23S rRNA (guanosine-2'-O-)-methyltransferase RlmB	IPR029028 (Alpha/beta knot methyltransferases)	GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0008173 (RNA methyltransferase activity)
Niben101Scf04296g00024.1	sp|Q56YU0|AL2C4_ARATH	****	Aldehyde dehydrogenase family 2 member C4	IPR015657 (Aminobutyraldehyde dehydrogenase), IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf05918g01002.1	sp|Q91YR7|PRP6_MOUSE	*-**	Pre-mRNA-processing factor 6	IPR011990 (Tetratricopeptide-like helical domain), IPR027108 (Pre-mRNA-processing factor 6/Prp1/STA1)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Scf05706g01006.1			Unknown protein		
Niben101Scf06668g04004.1	gb|KEH21192.1|	***-	myosin heavy chain-like protein [Medicago truncatula]	IPR011684 (KIP1-like)	
Niben101Scf05440g04003.1	sp|Q8LPS6|PPR3_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05468g01001.1	ref|NP_001078271.1|	*-*-	5'-3' exonuclease family protein [Arabidopsis thaliana] gb|AEE78882.1| 5'-3' exonuclease family protein [Arabidopsis thaliana]	IPR029060 (PIN domain-like)	
Niben101Scf09236g00013.1	emb|CDY29817.1|	***-	BnaC05g31730D [Brassica napus]	IPR021924 (Protein of unknown function DUF3537)	
Niben101Scf03341g05001.1	sp|P11898|GRP1_OXYRB	--*-	Glycine-rich protein HC1	IPR010800 (Glycine rich protein)	
Niben101Scf00854g01013.1	sp|A4QLA6|PSAA_LEPVR	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf03817g03032.1	ref|YP_009045741.1|	-**-	orf105a (mitochondrion) [Batis maritima] gb|AIC83344.1| orf105a (mitochondrion) [Batis maritima]		
Niben101Scf05395g01001.1	sp|Q5U241|PD5BB_XENLA	*-*-	Sister chromatid cohesion protein PDS5 homolog B-B	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf11962g00014.1	sp|A1S4P6|DXR_SHEAM	--*-	1-deoxy-D-xylulose 5-phosphate reductoisomerase		
Niben101Scf07309g00004.1	sp|Q40778|C74A2_PARAR	***-	Allene oxide synthase	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02439g00024.1			Unknown protein		
Niben101Scf02160g03001.1	ref|XP_003595756.1|	***-	Cleavage stimulation factor subunit 1-like protein [Medicago truncatula]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00034g01012.1	ref|XP_002519145.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF43356.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf01006g01004.1	sp|A5CZ07|MOAC_PELTS	***-	Cyclic pyranopterin monophosphate synthase accessory protein	IPR002820 (Molybdopterin cofactor biosynthesis C (MoaC) domain), IPR023045 (Molybdenum cofactor biosynthesis C)	GO:0006777 (Mo-molybdopterin cofactor biosynthetic process)
Niben101Scf00725g07008.1	AT3G18570.1	***-	Oleosin family protein LENGTH=166	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf01959g00004.1	AT5G17230.3	***-	PHYTOENE SYNTHASE LENGTH=437	IPR002060 (Squalene/phytoene synthase)	GO:0009058 (biosynthetic process), GO:0016740 (transferase activity), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf37758g00003.1	sp|Q9FJR0|RENT1_ARATH	*-*-	Regulator of nonsense transcripts 1 homolog	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf05712g01011.1	sp|Q9D1D4|TMEDA_MOUSE	***-	Transmembrane emp24 domain-containing protein 10	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf07743g01002.1	AT1G45207.2	*-*-	Remorin family protein LENGTH=555		
Niben101Scf09787g00001.1	sp|Q8S8U1|YCF2B_ATRBE	*-*-	Protein Ycf2 B	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf07449g00003.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07767g02004.1	AT1G17420.1	***-	lipoxygenase 3 LENGTH=919	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01759g00001.1	AT3G45210.1	***-	Protein of unknown function, DUF584 LENGTH=148	IPR007608 (Senescence regulator S40)	
Niben101Scf04083g01024.1	emb|CDX92841.1|	*-*-	BnaC07g40990D [Brassica napus]		
Niben101Scf02910g01033.1	sp|Q5ZJW4|SC22B_CHICK	***-	Vesicle-trafficking protein SEC22b	IPR011012 (Longin-like domain)	GO:0006810 (transport)
Niben101Scf06223g00029.1	sp|Q42134|PSA5B_ARATH	****	Proteasome subunit alpha type-5-B	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf02293g03021.1	sp|Q8GXA4|WIP1_ARATH	***-	WPP domain-interacting protein 1		
Niben101Scf08091g00020.1	ref|WP_008994622.1|	*-**	histidinol-phosphate phosphatase [Novosphingobium sp. Rr 2-17] gb|EIZ79701.1| inositol monophosphatase [Novosphingobium sp. Rr 2-17]	IPR000760 (Inositol monophosphatase)	GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf03484g00004.1	AT3G15660.1	***-	glutaredoxin 4 LENGTH=169	IPR004480 (Monothiol glutaredoxin-related), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01182g05003.1	sp|Q5W041|ARMC3_HUMAN	--*-	Armadillo repeat-containing protein 3	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00689g00012.1	AT4G38520.1	****	Protein phosphatase 2C family protein LENGTH=400	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf01177g01001.1	sp|Q8VZ91|EF103_ARATH	*-**	Ethylene-responsive transcription factor 6	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg09330g00002.1	sp|A0L5U1|RL28_MAGSM	*-*-	50S ribosomal protein L28	IPR001383 (Ribosomal protein L28), IPR026569 (Ribosomal protein L28/L24)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02015g01022.1	sp|Q9FK53|NLAL2_ARATH	*-**	H/ACA ribonucleoprotein complex subunit 1-like protein 2	IPR007504 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1), IPR009000 (Translation protein, beta-barrel domain)	GO:0001522 (pseudouridine synthesis), GO:0031429 (box H/ACA snoRNP complex), GO:0042254 (ribosome biogenesis)
Niben101Scf07894g00006.1	emb|CDX94651.1|	***-	BnaC07g10070D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf00025g00005.1	ref|XP_007026487.1|	*-**	RNA-binding protein, putative isoform 1 [Theobroma cacao] gb|EOY06989.1| RNA-binding protein, putative isoform 1 [Theobroma cacao]	IPR002344 (Lupus La protein), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0006396 (RNA processing), GO:0030529 (ribonucleoprotein complex)
Niben101Scf10217g00012.1			Unknown protein		
Niben101Scf01556g04027.1	sp|Q6NKW9|E138_ARATH	***-	Glucan endo-1,3-beta-glucosidase 8	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09928g01001.1	AT5G48930.1	****	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase LENGTH=433	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf07321g00040.1	AT1G72890.2	*-*-	Disease resistance protein (TIR-NBS class) LENGTH=487	IPR000157 (Toll/interleukin-1 receptor homology (TIR) domain)	GO:0005515 (protein binding), GO:0007165 (signal transduction)
Niben101Scf04109g07002.1	sp|Q9LUA9|COL10_ARATH	*-**	Zinc finger protein CONSTANS-LIKE 10	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf01375g04005.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf25617g00007.1	AT3G22142.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=1480	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00526g02022.1	sp|Q40546|KPYG_TOBAC	--*-	Pyruvate kinase isozyme G, chloroplastic		
Niben101Scf12746g00003.1	gb|ABD28627.2|	--**	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf08018g00008.1	sp|Q8L5Y9|PANK2_ARATH	****	Pantothenate kinase 2	IPR004567 (Type II pantothenate kinase)	GO:0004594 (pantothenate kinase activity), GO:0005524 (ATP binding), GO:0015937 (coenzyme A biosynthetic process)
Niben101Scf04123g01006.1	sp|Q9SUP7|HMGB6_ARATH	--*-	High mobility group B protein 6		
Niben101Scf00341g05015.1	AT3G13170.1	*-**	Spo11/DNA topoisomerase VI, subunit A protein LENGTH=362	IPR002815 (Spo11/DNA topoisomerase VI subunit A)	GO:0000737 (DNA catabolic process, endonucleolytic), GO:0003677 (DNA binding), GO:0005694 (chromosome)
Niben101Scf02348g02008.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf03115g03018.1	sp|Q9LQM3|C3H12_ARATH	***-	Zinc finger CCCH domain-containing protein 12	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf01075g00018.1	AT5G15640.1	***-	Mitochondrial substrate carrier family protein LENGTH=323	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf10749g02005.1	AT1G50700.1	****	calcium-dependent protein kinase 33 LENGTH=521	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf20209g00010.1	sp|Q9LHL6|TBL1_ARATH	*-*-	Protein trichome birefringence-like 1	IPR026057 (PC-Esterase)	
Niben101Scf04827g04017.1	AT1G09310.1	***-	Protein of unknown function, DUF538 LENGTH=179	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf00626g02021.1	sp|Q86JD4|SEC11_DICDI	****	Signal peptidase complex catalytic subunit sec11	IPR001733 (Peptidase S26B, eukaryotic signal peptidase), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016020 (membrane)
Niben101Scf03254g03004.1	gb|KGN52566.1|	--*-	DNA double-strand break repair rad50 ATPase [Cucumis sativus]		
Niben101Scf07388g00011.1	sp|Q9FKM5|XRCC3_ARATH	****	DNA repair protein XRCC3 homolog	IPR013632 (DNA recombination and repair protein Rad51, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0008094 (DNA-dependent ATPase activity)
Niben101Scf03679g00004.1	AT3G10870.1	***-	methyl esterase 17 LENGTH=276	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07424g02022.1	AT2G22140.1	*-*-	essential meiotic endonuclease 1B LENGTH=551	IPR006166 (ERCC4 domain)	GO:0003677 (DNA binding), GO:0004518 (nuclease activity)
Niben101Scf04906g00010.1	sp|P42327|ADH2_GEOSE	*-*-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01013g00002.1	AT3G54700.1	****	phosphate transporter 1;7 LENGTH=535	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04487g01005.1	sp|Q9FQ04|XRN4_ARATH	****	5'-3' exoribonuclease 4	IPR027073 (5'-3' exoribonuclease)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity), GO:0004534 (5'-3' exoribonuclease activity), GO:0005634 (nucleus), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008270 (zinc ion binding)
Niben101Scf09649g02002.1	sp|P13853|HS17C_ARATH	***-	17.6 kDa class I heat shock protein 3	IPR008978 (HSP20-like chaperone)	
Niben101Scf00980g07017.1	AT3G50130.1	***-	Plant protein of unknown function (DUF247) LENGTH=564	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf04190g00008.1	gb|KEH31585.1|	***-	electron carrier/iron ion-binding protein, putative [Medicago truncatula]	IPR007818 (Protein of unknown function DUF702)	
Niben101Scf08706g01013.1	sp|P27061|PPA1_SOLLC	****	Acid phosphatase 1	IPR005519 (Acid phosphatase (Class B)), IPR023214 (HAD-like domain)	GO:0003993 (acid phosphatase activity)
Niben101Scf02767g00003.1	sp|Q42485|ZFP1_ARATH	--*-	Zinc finger protein 1	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf10169g04008.1	sp|Q0WLB5|CLAH2_ARATH	*-**	Clathrin heavy chain 2	IPR016341 (Clathrin, heavy chain)	GO:0005198 (structural molecule activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030130 (clathrin coat of trans-Golgi network vesicle), GO:0030132 (clathrin coat of coated pit)
Niben101Scf00087g02002.1	AT2G24370.1	*-*-	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain LENGTH=788	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf09764g02010.1	AT5G11090.1	*-*-	serine-rich protein-related LENGTH=217		
Niben101Scf02627g00020.1	AT4G16580.1	***-	Protein phosphatase 2C family protein LENGTH=467	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf00087g06008.1	sp|Q8KCJ0|HEM2_CHLTE	***-	Delta-aminolevulinic acid dehydratase	IPR001731 (Porphobilinogen synthase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004655 (porphobilinogen synthase activity), GO:0033014 (tetrapyrrole biosynthetic process), GO:0046872 (metal ion binding)
Niben101Scf01015g00012.1	sp|Q9SR02|MED14_ARATH	*-*-	Mediator of RNA polymerase II transcription subunit 14		
Niben101Scf17180g00007.1	sp|Q9C7A2|Y3236_ARATH	--*-	Ankyrin repeat-containing protein	IPR026961 (PGG domain)	
Niben101Scf02334g01011.1	sp|Q5NHZ4|SYV_FRATT	--*-	Valine--tRNA ligase		
Niben101Scf01382g03002.1	AT4G30690.1	****	Translation initiation factor 3 protein LENGTH=281	IPR001288 (Translation initiation factor 3)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf14374g00002.1	sp|Q9NZC9|SMAL1_HUMAN	****	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR010003 (HARP domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0016568 (chromatin modification)
Niben101Scf00592g00017.1	sp|Q9ZPW2|APC10_ARATH	***-	Anaphase-promoting complex subunit 10	IPR004939 (Anaphase-promoting complex, subunit 10/DOC domain), IPR008979 (Galactose-binding domain-like)	
Niben101Scf08280g03021.1	sp|Q5DU02|UBP22_MOUSE	*-**	Ubiquitin carboxyl-terminal hydrolase 22	IPR001607 (Zinc finger, UBP-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0008270 (zinc ion binding), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf00690g01001.1	sp|Q9C7D7|CNIH1_ARATH	***-	Protein cornichon homolog 1	IPR003377 (Cornichon)	GO:0016020 (membrane), GO:0035556 (intracellular signal transduction)
Niben101Scf09089g01036.1	sp|B6YSQ2|RS11_THEON	***-	30S ribosomal protein S11	IPR001971 (Ribosomal protein S11)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf15490g00003.1	ref|XP_007042434.1|	***-	Cold regulated gene 27, putative isoform 1 [Theobroma cacao] gb|EOX98265.1| Cold regulated gene 27, putative isoform 1 [Theobroma cacao]		
Niben101Scf01180g01001.1	sp|Q8ZPP2|MDTK_SALTY	--*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf08653g06018.1	sp|Q6X7K0|WOX1_ARATH	***-	WUSCHEL-related homeobox 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf00338g10001.1	ref|WP_026787958.1|	*-*-	MULTISPECIES: hypothetical protein [Planktothrix]		
Niben101Scf04777g01002.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Ctg14282g00004.1	ref|XP_007016885.1|	*-*-	Domain of Uncharacterized protein function isoform 5 [Theobroma cacao] gb|EOY34504.1| Domain of Uncharacterized protein function isoform 5 [Theobroma cacao]	IPR010369 (Protein of unknown function DUF966)	
Niben101Scf02509g00003.1	sp|Q9SYD6|MATE1_ARATH	***-	MATE efflux family protein 1	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02908g06025.1	gb|KEH37570.1|	***-	F-box protein [Medicago truncatula]	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01623g01030.1	sp|Q5RBU2|RM46_PONAB	*-*-	39S ribosomal protein L46, mitochondrial	IPR021757 (Ribosomal protein L46)	
Niben101Scf16083g00001.1			Unknown protein		
Niben101Scf01307g01012.1	sp|Q9ZPV5|NOC2L_ARATH	***-	Nucleolar complex protein 2 homolog	IPR005343 (Nucleolar complex protein 2)	
Niben101Scf03173g01002.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06666g01024.1	AT3G43930.1	***-	BRCT domain-containing DNA repair protein LENGTH=502	IPR001357 (BRCT domain)	
Niben101Scf09512g03008.1	sp|Q06429|1A11_ARATH	***-	1-aminocyclopropane-1-carboxylate synthase-like protein 1	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00509g01014.1	sp|Q28HF8|NTCP7_XENTR	*-*-	Sodium/bile acid cotransporter 7	IPR016833 (Putative sodium bile acid cotransporter)	
Niben101Scf05799g02020.1	emb|CDY41828.1|	***-	BnaA08g03230D [Brassica napus]		
Niben101Scf04500g01015.1	dbj|BAD99418.1|	--**	acyl-transferase [Capsicum annuum]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf28181g00008.1	ref|XP_003078104.1|	*-**	G-patch nucleic acid binding protein (ISS) [Ostreococcus tauri]	IPR000467 (G-patch domain), IPR005824 (KOW)	GO:0003676 (nucleic acid binding)
Niben101Scf03584g06022.1	sp|P42735|CDI8_ARATH	***-	Cadmium-induced protein AS8		
Niben101Scf08332g00005.1	sp|Q29IG6|PNO1_DROPS	*-*-	RNA-binding protein pno1		
Niben101Scf01305g04010.1	sp|Q94KU5|PAP3_BRACM	--*-	Plastid lipid-associated protein 3, chloroplastic		
Niben101Scf11389g01015.1	sp|Q5R9A1|S35B2_PONAB	*-*-	Adenosine 3'-phospho 5'-phosphosulfate transporter 1	IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf00964g05016.1	AT2G02880.1	*-*-	mucin-related LENGTH=314	IPR021036 (Ribosomal protein S35, mitochondrial)	
Niben101Scf02044g08007.1	sp|Q84TE6|NAC22_ARATH	*-*-	NAC domain-containing protein 21/22	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02543g00007.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC)	GO:0043531 (ADP binding)
Niben101Scf04079g00007.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf00247g00009.1			Unknown protein		
Niben101Scf04060g03013.1	AT4G35880.1	*-*-	Eukaryotic aspartyl protease family protein LENGTH=524	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00584g03030.1			Unknown protein		
Niben101Scf28250g00011.1	sp|Q8S8Y1|RPOC2_ATRBE	*-*-	DNA-directed RNA polymerase subunit beta''	IPR025397 (Protein of unknown function DUF4370)	
Niben101Ctg13069g00002.1	ref|XP_002517843.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF44361.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04950g06001.1	gb|ACG26510.1|	***-	FIP1 [Zea mays]		
Niben101Scf32453g00003.1	AT3G45900.1	***-	Ribonuclease P protein subunit P38-related LENGTH=389		
Niben101Scf00339g05004.1	sp|Q9FM19|HIR1_ARATH	***-	Hypersensitive-induced response protein 1	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf00451g00008.1	sp|Q84WS8|U1125_ARATH	***-	U11/U12 small nuclear ribonucleoprotein 25 kDa protein		
Niben101Scf00393g02001.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR001630 (cAMP response element binding (CREB) protein), IPR004827 (Basic-leucine zipper domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf10524g02015.1	emb|CDY45368.1|	***-	BnaA09g12530D [Brassica napus]		
Niben101Scf07409g00018.1	sp|Q7NZU6|MSBA_CHRVO	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf14323g02002.1	AT4G23860.1	***-	PHD finger protein-related LENGTH=452	IPR003126 (Zinc finger, N-recognin), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf01852g03003.1	sp|Q9SHK2|PPR17_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf08227g00009.1	sp|B8HVS0|RS12_CYAP4	*-**	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf14625g02005.1	sp|P93043|VPS41_ARATH	***-	Vacuolar protein sorting-associated protein 41 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR016902 (Vacuolar protein sorting-associated protein 41)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport)
Niben101Scf02806g00026.1	ref|WP_006854831.1|	*-**	ATPase AAA [Synechococcus sp. WH 8016] gb|EHA59328.1| single-stranded nucleic acid binding R3H domain-containing protein [Synechococcus sp. WH 8016]	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Ctg09725g00001.1			Unknown protein		
Niben101Scf02348g00005.1	emb|CDX81288.1|	***-	BnaC09g06990D [Brassica napus]		
Niben101Scf03325g01003.1			Unknown protein		
Niben101Scf05306g04009.1	sp|Q683I9|PP295_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Ctg14198g00001.1	AT3G22425.2	*-**	imidazoleglycerol-phosphate dehydratase LENGTH=270	IPR000807 (Imidazoleglycerol-phosphate dehydratase)	GO:0000105 (histidine biosynthetic process), GO:0004424 (imidazoleglycerol-phosphate dehydratase activity)
Niben101Scf00180g11017.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00691g00007.1			Unknown protein		
Niben101Ctg12301g00003.1	sp|Q84K00|NAC78_ARATH	--*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06183g07016.1	sp|A9H3T0|RL1_GLUDA	*-*-	50S ribosomal protein L1	IPR011335 (Restriction endonuclease  type II-like), IPR016094 (Ribosomal protein L1, 2-layer alpha/beta-sandwich), IPR016095 (Ribosomal protein L1, 3-layer alpha/beta-sandwich), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003677 (DNA binding), GO:0003723 (RNA binding), GO:0004518 (nuclease activity)
Niben101Scf05057g06008.1	sp|B3H672|PP317_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf00262g04002.1	sp|Q2TA10|UB2D1_BOVIN	***-	Ubiquitin-conjugating enzyme E2 D1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf09317g00001.1	AT2G35660.1	*-**	FAD/NAD(P)-binding oxidoreductase family protein LENGTH=439	IPR008671 (Lycopene cyclase-type, FAD-binding)	GO:0016117 (carotenoid biosynthetic process), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen)
Niben101Scf05034g01014.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00035g01005.1	ref|XP_002529720.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF32686.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08195g06016.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf09996g00006.1	AT2G42850.1	***-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00725g06002.1	sp|Q9P3W1|T2EA_SCHPO	****	Transcription initiation factor IIE subunit alpha	IPR002853 (Transcription factor TFIIE, alpha subunit), IPR024550 (TFIIEalpha/SarR/Rpc3 HTH domain)	GO:0006367 (transcription initiation from RNA polymerase II promoter), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01369g00003.1	AT1G76440.1	***-	HSP20-like chaperones superfamily protein LENGTH=143	IPR008978 (HSP20-like chaperone)	
Niben101Scf09092g01009.1			Unknown protein		
Niben101Scf02929g06009.1	ref|YP_005090400.1|	*-*-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf09025g02008.1	sp|Q7SXM7|PRP31_DANRE	*-*-	U4/U6 small nuclear ribonucleoprotein Prp31	IPR002687 (Nop domain), IPR012976 (NOSIC), IPR027105 (U4/U6 small nuclear ribonucleoprotein Prp31)	GO:0000244 (spliceosomal tri-snRNP complex assembly), GO:0000398 (mRNA splicing, via spliceosome), GO:0046540 (U4/U6 x U5 tri-snRNP complex)
Niben101Scf06430g00027.1			Unknown protein		
Niben101Scf00854g11095.1			Unknown protein		
Niben101Scf11215g00012.1			Unknown protein		
Niben101Scf22688g00016.1	sp|Q9C952|CPSF3_ARATH	*-*-	Cleavage and polyadenylation specificity factor subunit 3-I	IPR001279 (Beta-lactamase-like), IPR011108 (RNA-metabolising metallo-beta-lactamase), IPR022712 (Beta-Casp domain)	
Niben101Scf01911g05004.1	sp|Q7NTZ8|NUDC_CHRVO	*-*-	NADH pyrophosphatase	IPR015375 (NADH pyrophosphatase-like, N-terminal), IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf06734g02027.1	AT1G60060.1	***-	Serine/threonine-protein kinase WNK (With No Lysine)-related LENGTH=386	IPR025610 (Transcription factor MYC/MYB N-terminal)	
Niben101Scf04205g00005.1	AT1G04970.1	****	lipid-binding serum glycoprotein family protein LENGTH=488	IPR017943 (Bactericidal permeability-increasing protein, alpha/beta domain)	GO:0008289 (lipid binding)
Niben101Scf02658g02001.1	sp|Q9S836|LAX2_ARATH	***-	Auxin transporter-like protein 2	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf00859g04008.1	sp|Q1PE17|CDPKI_ARATH	*-**	Calcium-dependent protein kinase 18	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02937g06003.1	AT5G61620.1	*-*-	myb-like transcription factor family protein LENGTH=317	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf10384g00015.1	sp|O82012|HSP12_SOLPE	***-	17.6 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf05881g02024.1	sp|A3LVD5|ESF2_PICST	***-	Pre-rRNA-processing protein ESF2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07476g00007.1	sp|A0A331|PSBC_COFAR	*-*-	Photosystem II CP43 reaction center protein		
Niben101Scf21770g00007.1	AT1G03445.1	****	Serine/threonine protein phosphatase family protein LENGTH=793	IPR012391 (Serine/threonine protein phosphatase, BSU1), IPR029052 (Metallo-dependent phosphatase-like)	GO:0004721 (phosphoprotein phosphatase activity), GO:0005506 (iron ion binding), GO:0005515 (protein binding), GO:0016787 (hydrolase activity), GO:0030145 (manganese ion binding)
Niben101Scf03565g06002.1	sp|Q9FQ04|XRN4_ARATH	****	5'-3' exoribonuclease 4	IPR027073 (5'-3' exoribonuclease)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity), GO:0004534 (5'-3' exoribonuclease activity), GO:0005634 (nucleus), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008270 (zinc ion binding)
Niben101Scf03267g00012.1			Unknown protein		
Niben101Ctg12832g00001.1	ref|XP_002522765.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF39616.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02864g06007.1	sp|Q9FWX2|NAC7_ARATH	***-	NAC domain-containing protein 7	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03734g02009.1	sp|Q43043|PME_PETIN	--**	Pectinesterase	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf05306g03004.1	AT2G37420.1	*-**	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf06976g06017.1	AT4G37580.1	***-	Acyl-CoA N-acyltransferases (NAT) superfamily protein LENGTH=403	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf04939g02014.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf07941g00004.1	ref|XP_007034809.1|	***-	P-loop containing nucle [Theobroma cacao]	IPR026127 (Probable RNA helicase SDE3), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02819g04004.1	sp|C1DFM2|DNAJ_AZOVD	*-*-	Chaperone protein DnaJ	IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf06016g02001.1	sp|Q5F4K8|PAT_PINPS	***-	Aspartate aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf15391g05003.1	emb|CDY04877.1|	--*-	BnaAnng00590D [Brassica napus]		
Niben101Scf16608g00001.1	sp|Q3C1H3|ATPF_NICSY	*-**	ATP synthase subunit b, chloroplastic	IPR002146 (ATPase, F0 complex, subunit B/B', bacterial/chloroplast)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf05233g00008.1	sp|F6HQ26|RU1C_VITVI	*-*-	U1 small nuclear ribonucleoprotein C	IPR003604 (Zinc finger, U1-type), IPR017340 (U1 small nuclear ribonucleoprotein C)	GO:0000387 (spliceosomal snRNP assembly), GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0005634 (nucleus), GO:0005685 (U1 snRNP), GO:0008270 (zinc ion binding)
Niben101Scf00465g04002.1	AT3G42565.1	***-	ECA1 gametogenesis related family protein LENGTH=119	IPR008502 (Prolamin-like domain)	
Niben101Scf04287g08001.1	sp|Q949Z1|PGLR4_ARATH	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf11307g00006.1	sp|Q9S793|FRS8_ARATH	--*-	Protein FAR1-RELATED SEQUENCE 8		
Niben101Scf04090g01002.1	sp|Q9LZG0|ADK2_ARATH	****	Adenosine kinase 2	IPR001805 (Adenosine kinase), IPR029056 (Ribokinase-like)	GO:0004001 (adenosine kinase activity), GO:0006166 (purine ribonucleoside salvage), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf01993g03012.1	AT5G07990.1	*-*-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03605g01006.1	AT1G30755.1	***-	Protein of unknown function (DUF668) LENGTH=615	IPR007700 (Protein of unknown function DUF668), IPR021864 (Protein of unknown function DUF3475)	
Niben101Scf10202g00008.1	AT3G61610.1	***-	Galactose mutarotase-like superfamily protein LENGTH=317	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf20914g00007.1	AT4G02900.1	***-	ERD (early-responsive to dehydration stress) family protein LENGTH=785	IPR003864 (Domain of unknown function DUF221), IPR027815 (Domain of unknown function DUF4463)	GO:0016020 (membrane)
Niben101Scf10476g06001.1	gb|KEH31824.1|	****	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf04220g06003.1	ref|XP_007023441.1|	***-	Low PSII Accumulation 3 isoform 1 [Theobroma cacao] gb|EOY26063.1| Low PSII Accumulation 3 isoform 1 [Theobroma cacao]	IPR018962 (Domain of unknown function DUF1995)	
Niben101Scf01593g05001.1	AT3G15260.1	***-	Protein phosphatase 2C family protein LENGTH=289	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf08643g04007.1	sp|Q9SWB4|PARP3_SOYBN	***-	Poly [ADP-ribose] polymerase 3	IPR001357 (BRCT domain), IPR004102 (Poly(ADP-ribose) polymerase, regulatory domain), IPR008893 (WGR domain), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR012982 (PADR1)	GO:0003950 (NAD+ ADP-ribosyltransferase activity), GO:0005634 (nucleus), GO:0006471 (protein ADP-ribosylation)
Niben101Scf02809g00009.1	sp|Q4QSC8|SGO1_MAIZE	--*-	Shugoshin-1	IPR011515 (Shugoshin, C-terminal)	GO:0000775 (chromosome, centromeric region), GO:0005634 (nucleus), GO:0045132 (meiotic chromosome segregation)
Niben101Scf19277g00017.1	AT2G31600.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=301	IPR025927 (Potential DNA-binding domain)	
Niben101Scf06890g00002.1	sp|A6QXC1|DBP3_AJECN	--*-	ATP-dependent RNA helicase DBP3		
Niben101Scf02353g06008.1	sp|Q8S8V2|YCF2A_ATRBE	*-*-	Protein Ycf2 A	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf28369g01003.1	sp|P0C5B2|MAD56_ORYSJ	--*-	MADS-box transcription factor 56	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00797g09011.1	gb|KEH33178.1|	--*-	leguminosin group485 secreted peptide [Medicago truncatula]		
Niben101Scf08721g01027.1	sp|Q9LFW3|COBL4_ARATH	***-	COBRA-like protein 4	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf00069g15032.1	AT3G03430.1	****	Calcium-binding EF-hand family protein LENGTH=83	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Ctg13561g00003.1	sp|P74367|PSB27_SYNY3	-***	Photosystem II lipoprotein Psb27	IPR025585 (Photosystem II Pbs27)	GO:0010207 (photosystem II assembly)
Niben101Scf01852g04030.1	sp|Q945M1|NDUB9_ARATH	***-	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	IPR008011 (Complex 1 LYR protein)	
Niben101Scf06218g07011.1	emb|CDY13541.1|	*-*-	BnaC02g23520D [Brassica napus]		
Niben101Scf01243g03014.1			Unknown protein		
Niben101Scf02664g01004.1	sp|Q9FWX2|NAC7_ARATH	*-*-	NAC domain-containing protein 7	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01897g08005.1	sp|Q8RX71|BAG4_ARATH	*-*-	BAG family molecular chaperone regulator 4		
Niben101Scf12715g01001.1	sp|Q92BF1|FPG_LISIN	--*-	Formamidopyrimidine-DNA glycosylase		
Niben101Scf03129g03013.1	AT3G16060.1	****	ATP binding microtubule motor family protein LENGTH=684	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf04939g02015.1	sp|Q5SU73|COIL_MOUSE	*-*-	Coilin		
Niben101Scf03267g00013.1	ref|XP_002529236.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF33149.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02042g03023.1	AT3G62900.1	*-**	CW-type Zinc Finger LENGTH=1465	IPR011124 (Zinc finger, CW-type)	GO:0008270 (zinc ion binding)
Niben101Scf01594g05009.1	gb|ABK81207.1|	*-*-	DOG1 alpha splice variant [Arabidopsis thaliana]		
Niben101Scf12954g04008.1	sp|P22242|DRPE_CRAPL	***-	Desiccation-related protein PCC13-62		
Niben101Scf01061g08025.1	ref|NP_001234800.1|	--*-	ethylene-responsive nuclear protein [Solanum lycopersicum] gb|ABB13294.1| ethylene-responsive nuclear protein [Solanum lycopersicum]		
Niben101Scf05435g00001.1	gb|ADR30793.1|	*-*-	hypoia-responsive family protein 4 [Hevea brasiliensis]	IPR007667 (Hypoxia induced protein, domain)	
Niben101Scf06662g01011.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf00885g09010.1	ref|NP_193381.1|	****	in [Arabidopsis thaliana] gb|AAO42160.1| putative membrane transporter [Arabidopsis thaliana] gb|AAO64127.1| putative membrane transporter [Arabidopsis thaliana] emb|CAJ00306.1| inositol transporter 4 [Arabidopsis thaliana] gb|AEE83759.1| inositol transporter 4 [Arabidopsis thaliana]	IPR005828 (General substrate transporter), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf06091g05001.1	AT4G37580.1	***-	Acyl-CoA N-acyltransferases (NAT) superfamily protein LENGTH=403	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf11491g00011.1	sp|Q9SD61|C3H42_ARATH	--*-	Zinc finger CCCH domain-containing protein 42		
Niben101Scf12919g00016.1	sp|F4HT49|PABP1_ARATH	****	Polyadenylate-binding protein 1	IPR006515 (Polyadenylate binding protein, human types 1, 2, 3, 4), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf11480g00007.1	emb|CDY19753.1|	*-*-	BnaA09g04060D [Brassica napus]		
Niben101Scf03152g00011.1	ref|XP_007014610.1|	*-*-	Transducin/WD40 repeat-like superfamily protein isoform 6 [Theobroma cacao] gb|EOY32229.1| Transducin/WD40 repeat-like superfamily protein isoform 6 [Theobroma cacao]		
Niben101Scf02217g02020.1	sp|Q62415|ASPP1_MOUSE	--*-	Apoptosis-stimulating of p53 protein 1		
Niben101Scf00457g10012.1	sp|P0CP81|PPID_CRYNB	*-**	Peptidyl-prolyl cis-trans isomerase D	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf03722g02001.1	emb|CDY11222.1|	***-	BnaA03g00580D [Brassica napus]		
Niben101Scf00023g05009.1	gb|ABA94593.2|	*-*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf11355g00008.1	sp|P13934|LEA76_BRANA	--*-	Late embryogenesis abundant protein 76		
Niben101Scf02248g00001.1	AT5G35450.1	***-	Disease resistance protein (CC-NBS-LRR class) family LENGTH=901	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf08193g00003.1			Unknown protein	IPR006031 (XYPPX repeat)	
Niben101Scf00854g09006.1	gb|AFB77177.1|	--*-	ATPase subunit 9 (mitochondrion) [Daucus carota subsp. carota] gb|AFB77181.1| ATPase subunit 9 (mitochondrion) [Daucus carota subsp. carota]		
Niben101Scf00674g04006.1	sp|Q5E5C7|RSMF_VIBF1	--**	Ribosomal RNA small subunit methyltransferase F	IPR023267 (RNA (C5-cytosine) methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf05463g01006.1	sp|P51659|DHB4_HUMAN	*-*-	Peroxisomal multifunctional enzyme type 2	IPR029069 (HotDog domain)	
Niben101Scf01538g05004.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04294g06038.1	AT2G17265.1	*-*-	homoserine kinase LENGTH=370	IPR013750 (GHMP kinase, C-terminal domain)	
Niben101Scf00560g05006.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03021g03047.1	AT3G17670.2	*-*-	tetratricopeptide repeat (TPR)-containing protein LENGTH=244	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf21202g00005.1	AT4G00730.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=802	IPR002913 (START domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf06671g02013.1	gb|KEH21158.1|	***-	membrane-associated kinase regulator, putative [Medicago truncatula]		
Niben101Scf06753g01004.1	ref|WP_004274703.1|	--*-	ADP-L-glycero-D-manno-heptose-6-epimerase [Campylobacter upsaliensis] gb|EAL53882.1| ADP-L-glycero-D-mannoheptose-6-epimerase (rfaD) [Campylobacter upsaliensis RM3195]		
Niben101Scf04920g01010.1	AT3G14980.1	*-**	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein LENGTH=1189	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008080 (N-acetyltransferase activity), GO:0008270 (zinc ion binding)
Niben101Scf05004g04028.1	sp|Q84MA5|CAAT1_ARATH	****	Cationic amino acid transporter 1	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf08446g00018.1	sp|A2X635|MOC2A_ORYSI	****	Molybdopterin synthase sulfur carrier subunit	IPR003749 (ThiamineS/Molybdopterin converting factor subunit 1), IPR012675 (Beta-grasp domain)	GO:0005829 (cytosol), GO:0006777 (Mo-molybdopterin cofactor biosynthetic process)
Niben101Scf02139g06004.1			Unknown protein		
Niben101Scf02605g03001.1	ref|XP_002523770.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF38619.1| conserved hypothetical protein [Ricinus communis]		
Niben101Ctg06104g00002.1			Unknown protein		
Niben101Scf04071g03006.1	AT2G32850.2	*-**	Protein kinase superfamily protein LENGTH=670	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10381g02010.1	emb|CDY26857.1|	***-	BnaA02g18820D [Brassica napus]	IPR001202 (WW domain)	GO:0005515 (protein binding)
Niben101Scf02531g01032.1	AT4G18710.1	****	Protein kinase superfamily protein LENGTH=380	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00978g14002.1	gb|KEH22373.1|	--*-	DUF4283 domain protein [Medicago truncatula]		
Niben101Scf00257g00007.1	ref|NP_001184924.1|	***-	P-loop containing nucle [Arabidopsis thaliana]	IPR010488 (Zeta toxin domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016301 (kinase activity)
Niben101Scf06869g02020.1	sp|Q96KP1|EXOC2_HUMAN	****	Exocyst complex component 2	IPR016024 (Armadillo-type fold), IPR029175 (Exocyst complex component Sec5)	GO:0000145 (exocyst), GO:0005488 (binding), GO:0006893 (Golgi to plasma membrane transport)
Niben101Scf03834g00005.1	sp|Q9Z311|MECR_RAT	****	Trans-2-enoyl-CoA reductase, mitochondrial	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02074g00058.1			Unknown protein		
Niben101Scf01764g03018.1	AT1G62400.1	****	Protein kinase superfamily protein LENGTH=345	IPR011009 (Protein kinase-like domain), IPR015783 (Serine/threonine-protein kinase HT1, plant)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11552g03010.1	sp|Q9SUD8|PP340_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07288g08019.1	sp|Q8L7A9|AP4E_ARATH	***-	AP-4 complex subunit epsilon	IPR016024 (Armadillo-type fold), IPR017109 (Adaptor protein complex AP-4, epsilon subunit)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf02223g02009.1	AT5G23100.1	***-	Protein of unknown function, DUF617 LENGTH=277	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf09157g00016.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf04209g00005.1	sp|Q84MC7|PYL9_ARATH	***-	Abscisic acid receptor PYL9	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf03757g05004.1	AT4G24970.1	*-*-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=707	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf06023g00003.1	gb|ACF19789.1|	****	NAC transcription factor [Nicotiana tabacum]	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01181g02022.1	sp|Q9LN01|PPR21_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01334g06003.1	sp|B0LXM0|METK_WHEAT	****	S-adenosylmethionine synthase	IPR002133 (S-adenosylmethionine synthetase)	GO:0004478 (methionine adenosyltransferase activity), GO:0005524 (ATP binding), GO:0006556 (S-adenosylmethionine biosynthetic process)
Niben101Scf13833g01014.1	AT1G13790.1	***-	XH/XS domain-containing protein LENGTH=736	IPR005379 (Uncharacterised domain XH), IPR005380 (XS domain), IPR005381 (Zinc finger-XS domain)	GO:0031047 (gene silencing by RNA)
Niben101Scf01105g01021.1	sp|Q9SV30|GATA8_ARATH	*-**	GATA transcription factor 8	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09442g02011.1	ref|XP_002521683.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF40670.1| conserved hypothetical protein [Ricinus communis]	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf04614g07005.1	AT1G35490.1	****	bZIP family transcription factor LENGTH=300	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08546g03002.1	sp|Q40478|ERF5_TOBAC	****	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02510g04002.1	sp|P27320|FER_SYNY3	***-	Ferredoxin-1	IPR010241 (Ferredoxin [2Fe-2S], plant), IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0022900 (electron transport chain), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf17947g01022.1	sp|Q8C7Q4|RBM4_MOUSE	--**	RNA-binding protein 4	IPR007201 (RNA recognition motif 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07879g00005.1	sp|Q33C48|RPOC2_NICTO	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf25430g00002.1	sp|P19963|ALL1_OLEEU	***-	Major pollen allergen Ole e 1	IPR006041 (Pollen Ole e 1 allergen/extensin)	GO:0005615 (extracellular space)
Niben101Scf01529g00012.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00851g05005.1	emb|CAC83580.1|	*-*-	major latex-like protein [Arabidopsis thaliana]	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf05077g00012.1	sp|Q54UC9|KIF3_DICDI	*-**	Kinesin-related protein 3	IPR001752 (Kinesin motor domain), IPR024658 (Kinesin-like, KLP2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf01982g00002.1	AT2G39470.1	***-	PsbP-like protein 2 LENGTH=238	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf01640g03003.1	sp|B4LMA2|EAF_DROVI	*-**	Ell-associated factor Eaf	IPR019194 (Transcription elognation factor  Eaf, N-terminal), IPR027093 (EAF family)	GO:0006355 (regulation of transcription, DNA-templated), GO:0032783 (ELL-EAF complex)
Niben101Scf10157g04004.1	sp|P49039|SUS2_SOLTU	****	Sucrose synthase	IPR012820 (Sucrose synthase, plant/cyanobacteria)	GO:0005985 (sucrose metabolic process), GO:0009058 (biosynthetic process), GO:0016157 (sucrose synthase activity)
Niben101Scf00213g02018.1	AT1G74120.1	*-*-	Mitochondrial transcription termination factor family protein LENGTH=445		
Niben101Scf02899g00002.1	ref|XP_007027957.1|	***-	Embryo sac development arrest 12, putative [Theobroma cacao] gb|EOY08459.1| Embryo sac development arrest 12, putative [Theobroma cacao]		
Niben101Scf02873g02011.1	sp|Q9S7R3|LSH10_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	IPR006936 (ALOG domain)	
Niben101Scf03735g07002.1			Unknown protein		
Niben101Scf12321g01018.1	sp|A5F3R4|RHLB_VIBC3	*-**	ATP-dependent RNA helicase RhlB	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR017945 (DHBP synthase RibB-like alpha/beta domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003725 (double-stranded RNA binding), GO:0005524 (ATP binding)
Niben101Scf01849g03016.1	sp|Q8VZK9|CSLE1_ARATH	****	Cellulose synthase-like protein E1	IPR005150 (Cellulose synthase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf07325g00029.1	AT3G02100.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=464	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf10222g06003.1	sp|Q9Y6U7|RN215_HUMAN	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04731g02007.1	sp|Q2GI75|DNAJ_EHRCR	--*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf08157g02028.1	sp|Q96D53|ADCK4_HUMAN	*-*-	AarF domain-containing protein kinase 4	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00863g06008.1	sp|Q54CM0|PPT3_DICDI	****	Palmitoyl-protein thioesterase 3	IPR002472 (Palmitoyl protein thioesterase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0002084 (protein depalmitoylation), GO:0008474 (palmitoyl-(protein) hydrolase activity), GO:0098599 (palmitoyl hydrolase activity)
Niben101Scf02990g02011.1	sp|A8GNU0|ISCS_RICAH	***-	Cysteine desulfurase IscS	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf05799g02021.1	sp|Q8RY67|WAKLO_ARATH	****	Wall-associated receptor kinase-like 14	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03538g04003.1			Unknown protein		
Niben101Scf09209g02012.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00319g00005.1	emb|CDY21623.1|	***-	BnaC09g46690D [Brassica napus]		
Niben101Scf00182g05013.1	sp|Q8CWM6|TRUA_THEEB	*-**	tRNA pseudouridine synthase A	IPR001406 (Pseudouridine synthase I, TruA), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf05368g06020.1	sp|O82647|PDC1_ARATH	*-*-	Pyruvate decarboxylase 1	IPR011766 (Thiamine pyrophosphate enzyme, C-terminal TPP-binding), IPR012001 (Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain), IPR029035 (DHS-like NAD/FAD-binding domain), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0030976 (thiamine pyrophosphate binding)
Niben101Scf05102g04001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04761g00019.1	sp|Q9FJN9|PABN2_ARATH	****	Polyadenylate-binding protein 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00449g05005.1	sp|P10536|RAB1B_RAT	***-	Ras-related protein Rab-1B	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf08199g02019.1	sp|Q9SNC3|FLA4_ARATH	***-	Fasciclin-like arabinogalactan protein 4	IPR000782 (FAS1 domain)	
Niben101Scf01518g03002.1	emb|CDY38584.1|	***-	BnaC06g30070D [Brassica napus]		
Niben101Scf04217g09010.1	sp|Q68EV0|PGAP3_XENLA	***-	Post-GPI attachment to proteins factor 3	IPR007217 (Per1-like)	
Niben101Scf13198g00003.1	sp|O27125|RPOA1_METTH	*-**	DNA-directed RNA polymerase subunit A'	IPR015699 (DNA-directed RNA pol I, largest subunit)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf00458g04008.1	sp|Q29IG6|PNO1_DROPS	*-*-	RNA-binding protein pno1		
Niben101Scf04447g01004.1	gb|AAU90304.1|	***-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf03710g04014.1	sp|Q9ZW85|LEUD3_ARATH	***-	3-isopropylmalate dehydratase small subunit 3	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf03924g03008.1	ref|WP_003869553.1|	*-*-	RNA-directed DNA polymerase [Thermoanaerobacter ethanolicus] gb|EGD52597.1| RNA-directed DNA polymerase (Reverse transcriptase) [Thermoanaerobacter ethanolicus JW 200]	IPR000477 (Reverse transcriptase domain)	
Niben101Scf08690g01009.1	sp|Q39828|SDL5A_SOYBN	***-	Dynamin-related protein 5A	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf02168g04007.1	ref|XP_002300142.1|	--*-	F-box family protein [Populus trichocarpa] gb|EEE84947.1| F-box family protein [Populus trichocarpa]		
Niben101Scf02857g01011.1	AT1G30280.1	***-	Chaperone DnaJ-domain superfamily protein LENGTH=455		
Niben101Scf02348g09001.1	sp|Q9LPM9|BCAT6_ARATH	****	Branched-chain-amino-acid aminotransferase 6	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0004084 (branched-chain-amino-acid transaminase activity), GO:0008152 (metabolic process), GO:0009081 (branched-chain amino acid metabolic process)
Niben101Scf00226g00006.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02726g00004.1	AT3G54700.1	****	phosphate transporter 1;7 LENGTH=535	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00063g06035.1	sp|Q9XI80|FUT6_ARATH	****	Fucosyltransferase 6	IPR004938 (Xyloglucan fucosyltransferase)	GO:0008107 (galactoside 2-alpha-L-fucosyltransferase activity), GO:0016020 (membrane), GO:0042546 (cell wall biogenesis)
Niben101Scf06172g04009.1	AT3G28850.1	***-	Glutaredoxin family protein LENGTH=428	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02494g09006.1	emb|CDY69766.1|	***-	BnaCnng65240D [Brassica napus]	IPR009902 (Protein of unknown function DUF1442), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf09666g00001.1	sp|P78968|PPZ_SCHPO	***-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf00264g00001.1	ref|XP_002510763.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52950.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04537g01010.1	sp|Q9M310|FBK77_ARATH	***-	F-box/kelch-repeat protein	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf05158g01007.1	gb|AAX82553.1|	*-*-	120 kDa pistil extensin-like protein [Nicotiana langsdorffii]		
Niben101Scf03848g10008.1			Unknown protein		
Niben101Scf05381g03010.1	AT3G22970.1	***-	Protein of unknown function (DUF506) LENGTH=370	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf00745g02009.1	sp|P97377|CDK2_MOUSE	****	Cyclin-dependent kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01413g02016.1	sp|Q9SXA6|ENDO1_ARATH	****	Endonuclease 1	IPR003154 (S1/P1 nuclease), IPR008947 (Phospholipase C/P1 nuclease domain)	GO:0003676 (nucleic acid binding), GO:0004519 (endonuclease activity), GO:0006308 (DNA catabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01008g01011.1	sp|Q3U9F6|RN166_MOUSE	--*-	RING finger protein 166	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf13537g00005.1	sp|Q9LHF0|ZHD9_ARATH	*-*-	Zinc-finger homeodomain protein 9	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf31861g00004.1	sp|Q55E35|SPCS2_DICDI	--**	Signal peptidase complex subunit 2	IPR009582 (Signal peptidase complex subunit 2)	GO:0005787 (signal peptidase complex), GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf03732g00001.1	sp|Q1JQE0|SNW1_BOVIN	***-	SNW domain-containing protein 1	IPR017862 (SKI-interacting protein, SKIP)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf00270g01004.1			Unknown protein		
Niben101Scf00864g01003.1	sp|Q9FYR7|SCL8_ARATH	***-	Scarecrow-like protein 8	IPR005202 (Transcription factor GRAS), IPR030013 (Scarecrow-like protein 8)	
Niben101Scf00890g01009.1	sp|O82200|MIOX2_ARATH	****	Inositol oxygenase 2	IPR007828 (Inositol oxygenase)	GO:0005506 (iron ion binding), GO:0005737 (cytoplasm), GO:0019310 (inositol catabolic process), GO:0050113 (inositol oxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02316g00024.1	sp|O65420|VAL3_ARATH	*-*-	B3 domain-containing transcription factor VAL3	IPR011124 (Zinc finger, CW-type)	GO:0008270 (zinc ion binding)
Niben101Scf03768g03025.1	AT5G01560.1	****	lectin receptor kinase a4.3 LENGTH=691	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf00307g01046.1	AT1G68390.1	*-**	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=408	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf00574g04008.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf06748g01012.1	gb|AIE73237.1|	***-	NAD-dependent epimerase/dehydratase [Synechocystis sp. PCC 6714]	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf02318g00005.1	sp|Q55FS2|STK4L_DICDI	*-**	Serine/threonine-protein kinase 4 homolog B	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06473g00012.1	sp|A2XG55|LEA1_ORYSI	--*-	Late embryogenesis abundant protein 1		
Niben101Scf01433g03002.1	AT3G54350.1	*-*-	Forkhead-associated (FHA) domain-containing protein LENGTH=702	IPR008984 (SMAD/FHA domain), IPR025999 (Microspherule protein, N-terminal domain)	GO:0005515 (protein binding)
Niben101Scf01125g02012.1	AT1G31160.1	*-*-	HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 LENGTH=187	IPR001310 (Histidine triad (HIT) protein), IPR011146 (HIT-like domain)	GO:0003824 (catalytic activity)
Niben101Scf01481g02018.1	sp|Q2PFW9|NOVA1_MACFA	*-**	RNA-binding protein Nova-1	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf02360g03027.1			Unknown protein		
Niben101Scf03445g04013.1			Unknown protein		
Niben101Scf08984g01013.1	AT3G18620.1	****	DHHC-type zinc finger family protein LENGTH=345	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf00885g02016.1	sp|Q93ZQ5|SPXM3_ARATH	*-*-	SPX domain-containing membrane protein	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf12690g01003.1	sp|Q03194|PMA4_NICPL	*-*-	Plasma membrane ATPase 4	IPR023298 (P-type ATPase,  transmembrane domain)	
Niben101Scf10200g01004.1	sp|Q5SMI4|RL393_ORYSJ	*-*-	60S ribosomal protein L39-3	IPR000077 (Ribosomal protein L39e), IPR023626 (Ribosomal protein L39e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01453g05005.1	sp|Q99LB2|DHRS4_MOUSE	*-*-	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	
Niben101Scf02034g04019.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf06514g03001.1	emb|CDY48277.1|	***-	BnaA05g10770D [Brassica napus]	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf08665g02009.1	sp|B8HXS0|FOLD_CYAP4	***-	Bifunctional protein FolD	IPR000672 (Tetrahydrofolate dehydrogenase/cyclohydrolase)	GO:0003824 (catalytic activity), GO:0004488 (methylenetetrahydrofolate dehydrogenase (NADP+) activity), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf09535g01002.1	ref|XP_002528179.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF34186.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06958g00007.1	AT1G27150.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=468	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00332g06018.1	sp|Q9SXL4|AHK1_ARATH	*-**	Histidine kinase 1	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain)	GO:0000155 (phosphorelay sensor kinase activity), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00526g00006.1	sp|O23051|KAO1_ARATH	*-*-	Ent-kaurenoic acid oxidase 1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04714g00004.1	AT4G00165.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=128	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf11688g01019.1	emb|CEG01164.1|	*-**	Nucleotide-binding, alpha-beta plait [Ostreococcus tauri]	IPR003169 (GYF), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR025640 (Domain of unknown function DUF4339)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf03834g02006.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf24082g00014.1	AT5G25280.1	*-*-	serine-rich protein-related LENGTH=220		
Niben101Scf00652g01001.1	sp|Q9M9W8|PLDP2_ARATH	***-	Phospholipase D p2	IPR015679 (Phospholipase D family), IPR025202 (Phospholipase D-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf11689g03003.1	sp|Q9FN67|Y5133_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0051260 (protein homooligomerization)
Niben101Scf06203g02004.1	AT5G22870.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=207	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf03029g03002.1	sp|P0C8Z7|GDL91_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf11139g00014.1	sp|Q8L748|NU107_ARATH	*-*-	Nuclear pore complex protein NUP107		
Niben101Scf21714g00001.1	gb|ACZ52183.1|	*-*-	ribosomal protein L10 (mitochondrion) [Digitalis purpurea]		
Niben101Scf03870g00002.1	sp|Q9M7J9|POT8_ARATH	****	Potassium transporter 8	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf04797g00021.1	ref|NP_850973.1|	*-*-	Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana] gb|AEE35028.1| Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]	IPR013761 (Sterile alpha motif/pointed domain)	
Niben101Scf00963g04011.1	ref|XP_002512326.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF49778.1| conserved hypothetical protein [Ricinus communis]	IPR021410 (The fantastic four family)	
Niben101Scf06042g05008.1	sp|Q5XEM9|ALFL5_ARATH	*-*-	PHD finger protein ALFIN-LIKE 5	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03858g00029.1	sp|B5ZY09|CLPX_RHILW	****	ATP-dependent Clp protease ATP-binding subunit ClpX	IPR003959 (ATPase, AAA-type, core), IPR004487 (Clp protease, ATP-binding subunit ClpX), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf11991g01001.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf00705g02011.1	gb|ABA94311.1|	*-*-	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]		
Niben101Scf07030g08004.1	sp|Q336X9|MPK6_ORYSJ	*-**	Mitogen-activated protein kinase 6	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02357g08006.1	sp|P71019|FABD_BACSU	****	Malonyl CoA-acyl carrier protein transacylase	IPR004410 (Malonyl CoA-acyl carrier protein transacylase, FabD-type), IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0003824 (catalytic activity), GO:0004314 ([acyl-carrier-protein] S-malonyltransferase activity), GO:0008152 (metabolic process), GO:0016740 (transferase activity)
Niben101Scf01689g04008.1			Unknown protein		
Niben101Scf00293g11012.1	sp|Q9SIN2|TBL39_ARATH	*-*-	Protein trichome birefringence-like 39	IPR026057 (PC-Esterase)	
Niben101Scf02243g00009.1	sp|Q9SIM4|RL141_ARATH	***-	60S ribosomal protein L14-1	IPR002784 (Ribosomal protein L14), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02286g01014.1	sp|Q54GB2|CTSL2_DICDI	*-**	CTD small phosphatase-like protein 2	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding), GO:0016791 (phosphatase activity)
Niben101Scf02778g05003.1	sp|Q9LSQ6|PBP1_ARATH	****	Calcium-binding protein PBP1	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf16773g02010.1	sp|Q8L8A5|GIF1_ARATH	***-	GRF1-interacting factor 1	IPR007726 (SS18 family)	
Niben101Ctg12381g00001.1			Unknown protein		
Niben101Scf08002g03015.1	AT1G13030.1	*-*-	sphere organelles protein-related LENGTH=608		
Niben101Scf01994g01007.1	AT5G02810.1	***-	pseudo-response regulator 7 LENGTH=727	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf00315g02001.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00494g07007.1	sp|Q9STE1|PP333_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01349g02003.1	AT4G08250.1	***-	GRAS family transcription factor LENGTH=483	IPR005202 (Transcription factor GRAS), IPR030028 (Scarecrow-like protein 26/nodulation signalling pathway 2)	
Niben101Scf02071g00005.1	AT2G46690.1	***-	SAUR-like auxin-responsive protein family LENGTH=121	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03129g01013.1	sp|Q02336|ADA2_YEAST	***-	Transcriptional adapter 2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf11138g01013.1	sp|P24325|GALE_HAEIN	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005886 (UDP-glucose 4-epimerase GalE), IPR025308 (UDP-glucose 4-epimerase C-terminal domain)	GO:0003824 (catalytic activity), GO:0003978 (UDP-glucose 4-epimerase activity), GO:0006012 (galactose metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf04081g00020.1	sp|Q9FYH7|VSR6_ARATH	***-	Vacuolar-sorting receptor 6	IPR001881 (EGF-like calcium-binding domain), IPR003137 (Protease-associated domain, PA)	GO:0005509 (calcium ion binding)
Niben101Scf02569g01002.1	sp|Q94C77|RPKL_ARATH	****	Receptor protein kinase-like protein	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01719g08010.1	sp|O34392|YTRE_BACSU	*-**	ABC transporter ATP-binding protein YtrE	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf22811g01002.1	gb|KEH41854.1|	*-*-	START-2 domain protein [Medicago truncatula]	IPR023393 (START-like domain)	
Niben101Scf01154g12001.1	sp|Q60GF7|PIGX_RAT	*-*-	Phosphatidylinositol-glycan biosynthesis class X protein	IPR013233 (Glycosylphosphatidylinositol-mannosyltransferase I, PIG-X/PBN1)	GO:0005789 (endoplasmic reticulum membrane), GO:0006506 (GPI anchor biosynthetic process)
Niben101Scf01200g04003.1	sp|Q01664|TFAP4_HUMAN	--*-	Transcription factor AP-4	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf06807g01001.1	sp|Q8LFL4|CLE25_ARATH	*-*-	CLAVATA3/ESR (CLE)-related protein 25		
Niben101Scf08863g01012.1	sp|A5PKG6|UBE4A_BOVIN	*-**	Ubiquitin conjugation factor E4 A	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR019474 (Ubiquitin conjugation factor E4, core)	GO:0000151 (ubiquitin ligase complex), GO:0004842 (ubiquitin-protein transferase activity), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0016567 (protein ubiquitination), GO:0034450 (ubiquitin-ubiquitin ligase activity)
Niben101Scf02413g03027.1	sp|P24806|XTH24_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 24	IPR010713 (Xyloglucan endo-transglycosylase, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf10241g01004.1	emb|CDY03744.1|	***-	BnaA02g14930D [Brassica napus]		
Niben101Scf02357g06004.1	sp|Q7ZV90|PIF1_DANRE	*-**	ATP-dependent DNA helicase PIF1	IPR010285 (DNA helicase Pif1 like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf02731g00007.1			Unknown protein		
Niben101Scf03690g00018.1	AT3G51150.2	*-**	ATP binding microtubule motor family protein LENGTH=1054	IPR021881 (Protein of unknown function DUF3490), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement)
Niben101Scf00150g00007.1	sp|P28268|TBA_EUPVA	***-	Tubulin alpha chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf01520g01005.1	gb|AED02502.1|	--*-	xyloglucan-specific endoglucanase inhibitor [Solanum tuberosum]	IPR021109 (Aspartic peptidase domain)	
Niben101Scf12783g00002.1	sp|Q9STT5|AB7A_ARATH	*-*-	ABC transporter A family member 7		
Niben101Scf03388g00009.1	sp|O48850|VA725_ARATH	--*-	Vesicle-associated membrane protein 725		
Niben101Scf10608g02009.1	sp|A1KNQ0|SAHH_MYCBP	****	Adenosylhomocysteinase	IPR000043 (Adenosylhomocysteinase), IPR016040 (NAD(P)-binding domain)	GO:0004013 (adenosylhomocysteinase activity), GO:0006730 (one-carbon metabolic process)
Niben101Scf08175g00009.1	AT1G09960.1	***-	sucrose transporter 4 LENGTH=510	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf01685g03004.1	sp|O64477|Y2913_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain)	GO:0048544 (recognition of pollen)
Niben101Scf07382g00001.1	ref|XP_002517585.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF44749.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04878g00020.1	sp|Q5M868|GBA2_RAT	*-**	Non-lysosomal glucosylceramidase	IPR006775 (Glucosylceramidase)	GO:0004348 (glucosylceramidase activity), GO:0006665 (sphingolipid metabolic process), GO:0016021 (integral component of membrane)
Niben101Scf28901g00003.1	sp|Q8LBH4|SPX1_ARATH	***-	SPX domain-containing protein 1	IPR004331 (SPX, N-terminal)	
Niben101Scf03651g01010.1	gb|AES64035.2|	--**	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf01005g00008.1	ref|XP_002522650.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF39737.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00616g01004.1			Unknown protein		
Niben101Scf06412g04013.1	sp|Q9JI44|DMAP1_MOUSE	*-**	DNA methyltransferase 1-associated protein 1	IPR008468 (DNA methyltransferase 1-associated 1), IPR009057 (Homeodomain-like), IPR027109 (SWR1-complex protein 4/DNA methyltransferase 1-associated protein 1)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0006338 (chromatin remodeling), GO:0035267 (NuA4 histone acetyltransferase complex), GO:0043967 (histone H4 acetylation), GO:0043968 (histone H2A acetylation), GO:0045892 (negative regulation of transcription, DNA-templated)
Niben101Scf02133g09001.1			Unknown protein		
Niben101Scf01090g05027.1	ref|WP_026430986.1|	--**	transcription termination factor Rho [Actinomyces georgiae]	IPR011112 (Rho termination factor, N-terminal), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0006353 (DNA-templated transcription, termination)
Niben101Scf01409g05002.1	AT2G24765.1	***-	ADP-ribosylation factor 3 LENGTH=182	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf02513g01021.1	sp|Q9ZM69|COPA_HELPJ	*-*-	Copper-transporting ATPase	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0016021 (integral component of membrane)
Niben101Scf00526g02021.1	sp|Q9LQL2|PTR14_ARATH	*-*-	Protein NRT1/ PTR FAMILY 7.3	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Ctg09175g00001.1	gb|ABE87612.1|	*-*-	Arf GTPase activating protein [Medicago truncatula]		
Niben101Scf01851g03012.1	sp|Q9LEX0|P2A13_ARATH	***-	F-box protein PP2-A13	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf00165g05008.1	sp|Q38897|BEL1_ARATH	*-*-	Homeobox protein BEL1 homolog	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09141g02017.1	AT5G36250.1	***-	Protein phosphatase 2C family protein LENGTH=448	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf06125g01005.1	sp|Q9Y169|EXT2_DROME	*-*-	Exostosin-2	IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0006024 (glycosaminoglycan biosynthetic process), GO:0015012 (heparan sulfate proteoglycan biosynthetic process), GO:0016021 (integral component of membrane)
Niben101Scf14282g00006.1	emb|CDX92646.1|	***-	BnaC07g39040D [Brassica napus]		
Niben101Scf01911g05005.1	sp|Q50940|CAH_NEIGO	***-	Carbonic anhydrase	IPR001148 (Alpha carbonic anhydrase), IPR023561 (Carbonic anhydrase, alpha-class)	GO:0004089 (carbonate dehydratase activity), GO:0006730 (one-carbon metabolic process), GO:0008270 (zinc ion binding)
Niben101Scf01075g00017.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03871g04013.1	sp|A1AWT1|SYFA_RUTMC	--*-	Phenylalanine--tRNA ligase alpha subunit		
Niben101Scf39326g00002.1	gb|ABA07806.2|	*-*-	cytochrome P450 monooxygenase CYP82E2 [Nicotiana tabacum]	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03439g03001.1	gb|KEH40675.1|	*-*-	pollen protein Ole E I-like protein [Medicago truncatula]	IPR006041 (Pollen Ole e 1 allergen/extensin), IPR006706 (Extensin domain)	GO:0005199 (structural constituent of cell wall), GO:0009664 (plant-type cell wall organization)
Niben101Scf13344g00009.1	sp|Q8X9L0|FTSH_ECO57	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf04444g05001.1	AT5G55660.1	*-*-	DEK domain-containing chromatin associated protein LENGTH=778	IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding)
Niben101Scf09180g00001.1			Unknown protein		
Niben101Scf03600g04029.1	AT1G67640.1	***-	Transmembrane amino acid transporter family protein LENGTH=441	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf11380g00006.1	sp|Q07G10|ALKB8_XENTR	*-*-	Alkylated DNA repair protein alkB homolog 8	IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	
Niben101Scf00448g19012.1			Unknown protein		
Niben101Scf00885g03002.1			Unknown protein		
Niben101Scf05918g01001.1	sp|A1A5S1|PRP6_RAT	****	Pre-mRNA-processing factor 6	IPR010491 (PRP1 splicing factor, N-terminal), IPR011990 (Tetratricopeptide-like helical domain), IPR027108 (Pre-mRNA-processing factor 6/Prp1/STA1)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf00725g07007.1	emb|CDY17693.1|	--*-	BnaA06g35120D [Brassica napus]		
Niben101Scf00034g01011.1	ref|XP_002522368.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF40052.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf07309g00003.1	sp|Q7V643|CH601_PROMM	***-	60 kDa chaperonin 1	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding), GO:0042026 (protein refolding), GO:0044267 (cellular protein metabolic process)
Niben101Scf01623g06026.1	sp|Q84J70|DI193_ARATH	***-	Protein DEHYDRATION-INDUCED 19 homolog 3	IPR008598 (Drought induced 19 protein-like, zinc-binding domain), IPR027935 (Protein dehydration-induced 19, C-terminal)	
Niben101Scf03804g01027.1	AT1G21780.1	***-	BTB/POZ domain-containing protein LENGTH=326	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf05468g01002.1	sp|P43741|DPO1_HAEIN	*-**	DNA polymerase I	IPR029060 (PIN domain-like)	GO:0003677 (DNA binding)
Niben101Scf09236g00012.1	sp|Q5E9R3|EHD1_BOVIN	***-	EH domain-containing protein 1	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00438g00007.1			Unknown protein		
Niben101Scf07257g00002.1			Unknown protein		
Niben101Scf28901g00002.1	sp|Q9SD82|RFA1B_ARATH	--*-	Replication protein A 70 kDa DNA-binding subunit B	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf07321g00041.1	sp|Q9FIC8|GL116_ARATH	***-	Germin-like protein subfamily 1 member 16	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf04554g06004.1	AT1G49040.1	*-*-	stomatal cytokinesis defective / SCD1 protein (SCD1) LENGTH=1187		
Niben101Scf04235g00010.1	sp|F4JSZ5|BIG1_ARATH	****	Brefeldin A-inhibited guanine nucleotide-exchange protein 1	IPR000904 (Sec7 domain), IPR016024 (Armadillo-type fold), IPR023394 (Sec7 domain, alpha orthogonal bundle)	GO:0005086 (ARF guanyl-nucleotide exchange factor activity), GO:0005488 (binding), GO:0032012 (regulation of ARF protein signal transduction)
Niben101Scf01155g05009.1	sp|Q6G1C0|RLMN_BARQU	****	Dual-specificity RNA methyltransferase RlmN	IPR004383 (Ribosomal RNA large subunit methyltransferase RlmN/Cfr), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0006364 (rRNA processing), GO:0008173 (RNA methyltransferase activity), GO:0030488 (tRNA methylation), GO:0051536 (iron-sulfur cluster binding), GO:0070475 (rRNA base methylation)
Niben101Scf10927g00006.1	ref|XP_007010390.1|	*-*-	Retrotransp [Theobroma cacao]		
Niben101Scf16678g00012.1	AT4G14615.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages;	IPR018625 (Protein of unknown function DUF2346)	
Niben101Scf01685g07011.1			Unknown protein		
Niben101Scf02425g02007.1	AT5G12040.1	*-*-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein LENGTH=369	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf05226g05017.1	sp|P43507|CPR3_CAEEL	--**	Cathepsin B-like cysteine proteinase 3	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf07919g00002.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf11484g00001.1			Unknown protein		
Niben101Scf03517g00006.1	sp|A6ZQ59|URA8_YEAS7	*-**	CTP synthase 2	IPR004468 (CTP synthase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003883 (CTP synthase activity), GO:0006221 (pyrimidine nucleotide biosynthetic process)
Niben101Scf31339g01003.1	AT1G55760.1	***-	BTB/POZ domain-containing protein LENGTH=329	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf00362g00019.1	AT2G41660.1	***-	Protein of unknown function, DUF617 LENGTH=297	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf06357g01003.1	AT1G20550.1	***-	O-fucosyltransferase family protein LENGTH=564	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf03484g00005.1	sp|Q9SRM9|ALMT8_ARATH	****	Aluminum-activated malate transporter 8	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf02223g03003.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf06819g00012.1	emb|CDY21908.1|	***-	BnaC09g00140D [Brassica napus]		
Niben101Scf07882g00020.1	sp|Q9SIV5|C3H19_ARATH	*-*-	Zinc finger CCCH domain-containing protein 19	IPR003121 (SWIB/MDM2 domain), IPR003169 (GYF), IPR004343 (Plus-3)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006352 (DNA-templated transcription, initiation), GO:0016570 (histone modification)
Niben101Scf20727g00001.1	AT4G37580.1	*-*-	Acyl-CoA N-acyltransferases (NAT) superfamily protein LENGTH=403	IPR016181 (Acyl-CoA N-acyltransferase)	
Niben101Scf02006g03001.1	AT5G19860.1	***-	Protein of unknown function, DUF538 LENGTH=181	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf14872g00008.1	sp|Q0WX57|U17LO_HUMAN	*-**	Ubiquitin carboxyl-terminal hydrolase 17-like protein 24	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf05227g00013.1	sp|A7NY33|PER4_VITVI	****	Peroxidase 4	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00565g00013.1	AT1G01300.1	***-	Eukaryotic aspartyl protease family protein LENGTH=485	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00025g00006.1	sp|Q5WTI4|MRAY_LEGPL	****	Phospho-N-acetylmuramoyl-pentapeptide-transferase	IPR000715 (Glycosyl transferase, family 4)	GO:0008963 (phospho-N-acetylmuramoyl-pentapeptide-transferase activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf00980g06020.1	sp|Q6CFJ0|FIS1_YARLI	*-**	Mitochondria fission 1 protein	IPR016543 (Mitochondria fission 1 protein), IPR028058 (Fis1, N-terminal tetratricopeptide repeat), IPR028061 (Fis1, C-terminal tetratricopeptide repeat)	GO:0000266 (mitochondrial fission), GO:0005515 (protein binding)
Niben101Scf03834g02008.1	ref|NP_001054884.1|	-**-	[Oryza sativa Japonica Group] dbj|BAF16798.1| [Oryza sativa Japonica Group]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf03268g03008.1	AT4G08310.1	*-*-	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages;		
Niben101Scf03362g01014.1	sp|P46609|KNOS6_ORYSJ	*-*-	Homeobox protein knotted-1-like 6	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00180g01011.1	sp|P0C5A3|DPNP_ORYSA	****	3'(2'),5'-bisphosphate nucleotidase	IPR000760 (Inositol monophosphatase)	GO:0006790 (sulfur compound metabolic process), GO:0008441 (3'(2'),5'-bisphosphate nucleotidase activity), GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf07231g07006.1	ref|WP_017309244.1|	*-*-	carotene isomerase [Fischerella sp. PCC 9339]		
Niben101Scf00854g04096.1	ref|XP_002796087.1|	--*-	LipA and NB-ARC domain-containing protein [Paracoccidioides sp. 'lutzii' Pb01]		
Niben101Scf01797g02014.1			Unknown protein		
Niben101Scf11303g00007.1	sp|P0CQ85|HAS1_CRYNB	*-**	ATP-dependent RNA helicase HAS1	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf05678g00006.1	sp|Q9LFT0|TBL19_ARATH	***-	Protein trichome birefringence-like 19	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf00015g01003.1	sp|Q9FDZ9|RL212_ARATH	***-	60S ribosomal protein L21-2	IPR001147 (Ribosomal protein L21e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04988g02006.1			Unknown protein		
Niben101Scf20037g00005.1	sp|O04016|P5CR_ACTCH	****	Pyrroline-5-carboxylate reductase	IPR000304 (Pyrroline-5-carboxylate reductase), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like)	GO:0004735 (pyrroline-5-carboxylate reductase activity), GO:0006561 (proline biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf02572g01009.1	sp|Q75JQ3|PEX2_DICDI	--*-	Peroxisome biogenesis factor 2	IPR006845 (Pex, N-terminal)	
Niben101Scf00691g04008.1			Unknown protein		
Niben101Scf06344g06005.1	sp|Q42945|CAMT6_TOBAC	****	Caffeoyl-CoA O-methyltransferase 6	IPR002935 (O-methyltransferase, family 3), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008171 (O-methyltransferase activity)
Niben101Scf03817g03033.1	sp|Q6DFN1|NDUF3_XENTR	--*-	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3	IPR007523 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3)	
Niben101Scf00349g01013.1	sp|Q9LW15|CX5B1_ARATH	*-**	Cytochrome c oxidase subunit 5b-1, mitochondrial	IPR002124 (Cytochrome c oxidase, subunit Vb)	GO:0004129 (cytochrome-c oxidase activity), GO:0005740 (mitochondrial envelope)
Niben101Scf08137g05021.1	ref|WP_025719858.1|	--*-	exopolyphosphatase [Paenibacillus sp. 1-18]	IPR003156 (DHHA1 domain)	GO:0003676 (nucleic acid binding)
Niben101Scf00994g07010.1	sp|Q6NRI8|CENPS_XENLA	--*-	Centromere protein S	IPR009072 (Histone-fold), IPR029003 (Kinetochore component CENP-S)	GO:0046982 (protein heterodimerization activity)
Niben101Scf17947g00002.1	sp|Q7V382|RL1_PROMP	***-	50S ribosomal protein L1	IPR016094 (Ribosomal protein L1, 2-layer alpha/beta-sandwich), IPR016095 (Ribosomal protein L1, 3-layer alpha/beta-sandwich), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding)
Niben101Scf00854g01014.1	sp|Q8S8V2|YCF2A_ATRBE	*-*-	Protein Ycf2 A		
Niben101Scf02249g06009.1	emb|CDY16984.1|	***-	BnaC09g41110D [Brassica napus]	IPR008545 (WEB family)	
Niben101Scf00449g03001.1	sp|Q2LVL0|MSBA_SYNAS	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf03460g01003.1	sp|A5UZH7|NUOD2_ROSS1	*-**	NADH-quinone oxidoreductase subunit D 2	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00428g05024.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00883g13016.1	AT4G34860.1	***-	Plant neutral invertase family protein LENGTH=571	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf00270g01002.1	AT2G43235.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=437		
Niben101Scf10169g04009.1	AT1G07160.1	****	Protein phosphatase 2C family protein LENGTH=380	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf03481g01032.1	sp|F4HT49|PABP1_ARATH	****	Polyadenylate-binding protein 1	IPR002004 (Polyadenylate-binding protein/Hyperplastic disc protein), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf10415g02006.1	AT1G61120.1	*-**	terpene synthase 04 LENGTH=877	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf02806g00025.1	AT5G39950.1	***-	thioredoxin 2 LENGTH=133	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Ctg02900g00001.1			Unknown protein		
Niben101Scf10541g00001.1			Unknown protein		
Niben101Scf01382g03003.1	AT5G17420.1	****	Cellulose synthase family protein LENGTH=1026	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf08894g00001.1	ref|XP_003597309.1|	***-	CCR4-NOT transcription complex subunit [Medicago truncatula]		
Niben101Scf00680g01008.1	sp|Q84N34|HHP2_ARATH	***-	Heptahelical transmembrane protein 2	IPR004254 (AdipoR/Haemolysin-III-related)	GO:0016021 (integral component of membrane)
Niben101Scf00837g05010.1	emb|CDX73190.1|	***-	BnaC06g36380D [Brassica napus]		
Niben101Scf07631g02024.1	sp|Q9SQI2|GIGAN_ARATH	***-	Protein GIGANTEA	IPR026211 (GIGANTEA)	GO:2000028 (regulation of photoperiodism, flowering)
Niben101Scf01852g03002.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03226g00003.1	AT4G12050.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=339	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf01102g03004.1	sp|B1NWE1|RPOC1_MANES	*-**	DNA-directed RNA polymerase subunit beta'	IPR006592 (RNA polymerase, N-terminal), IPR007066 (RNA polymerase Rpb1, domain 3), IPR007080 (RNA polymerase Rpb1, domain 1), IPR007081 (RNA polymerase Rpb1, domain 5), IPR015801 (Copper amine oxidase, N2/N3-terminal), IPR021602 (Protein of unknown function DUF3223)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005507 (copper ion binding), GO:0006351 (transcription, DNA-templated), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding)
Niben101Scf06698g03019.1	sp|Q9M817|PTR6_ARATH	***-	Protein NRT1/ PTR FAMILY 1.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01770g01010.1	ref|YP_006666138.1|	-**-	RnaseH (mitochondrion) [Malus domestica] emb|CBX33402.1| rnaseH (mitochondrion) [Malus domestica]		
Niben101Scf06310g02004.1	sp|A5WVX1|MET13_DANRE	*-*-	Methyltransferase-like protein 13	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf04294g03011.1	gb|AAD40381.1|	****	vesicle transport-related protein [Homo sapiens]	IPR001619 (Sec1-like protein), IPR027482 (Sec1-like, domain 2)	GO:0006904 (vesicle docking involved in exocytosis), GO:0016192 (vesicle-mediated transport)
Niben101Scf02085g21007.1	sp|O49686|PYR1_ARATH	***-	Abscisic acid receptor PYR1	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf00756g02002.1			Unknown protein		
Niben101Scf00543g03005.1	sp|B9S2H4|Y232_RICCO	***-	UPF0392 protein RCOM_0530710	IPR008166 (Domain of unknown function DUF23)	
Niben101Scf12671g00003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf15048g00003.1	AT5G55530.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=405	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00199g05002.1	sp|B7MAC8|HLDE_ECO45	*-*-	Bifunctional protein HldE	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process)
Niben101Scf08206g02025.1	ref|NP_001052284.1|	--*-	[Oryza sativa Japonica Group] dbj|BAF14198.1| [Oryza sativa Japonica Group]		
Niben101Scf08653g06017.1	sp|P29502|TBB3_PEA	***-	Tubulin beta-3 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf03044g00005.1	sp|Q9T076|ENL2_ARATH	*-*-	Early nodulin-like protein 2	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf01180g01002.1	AT4G22790.1	*-*-	MATE efflux family protein LENGTH=491		
Niben101Scf06942g00003.1	sp|O22922|RU2B1_ARATH	***-	U2 small nuclear ribonucleoprotein B''	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR024888 (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'')	GO:0000166 (nucleotide binding), GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0017069 (snRNA binding)
Niben101Scf00539g01021.1	ref|NP_001175326.1|	***-	[Oryza sativa Japonica Group] dbj|BAH94054.1| [Oryza sativa Japonica Group]		
Niben101Scf09928g01002.1	sp|Q07326|PIGF_HUMAN	*-*-	Phosphatidylinositol-glycan biosynthesis class F protein	IPR009580 (GPI biosynthesis protein Pig-F)	GO:0005789 (endoplasmic reticulum membrane), GO:0006506 (GPI anchor biosynthetic process), GO:0016021 (integral component of membrane)
Niben101Scf02131g00009.1	AT5G03230.1	***-	Protein of unknown function, DUF584 LENGTH=166	IPR007608 (Senescence regulator S40)	
Niben101Ctg15666g00004.1	gb|ACG41065.1|	--*-	elongation factor P [Zea mays]		
Niben101Scf07005g00015.1	sp|Q07878|VPS13_YEAST	*-*-	Vacuolar protein sorting-associated protein 13	IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf08470g06005.1	sp|Q2V3I3|EPFL4_ARATH	*-*-	EPIDERMAL PATTERNING FACTOR-like protein 4		
Niben101Scf00233g00015.1	sp|A4GSN8|NUA_ARATH	*-*-	Nuclear-pore anchor		
Niben101Scf04271g05004.1	sp|F4IN58|PIEZO_ARATH	*-**	Piezo-type mechanosensitive ion channel homolog	IPR027272 (Piezo family)	GO:0008381 (mechanically-gated ion channel activity), GO:0016021 (integral component of membrane)
Niben101Scf02069g00019.1	ref|WP_011984095.1|	--*-	serine protease [Bacillus cytotoxicus] ref|YP_001374337.1| hypothetical protein Bcer98_1016 [Bacillus cytotoxicus NVH 391-98] gb|ABS21342.1| SCP-like extracellular [Bacillus cytotoxicus NVH 391-98]		
Niben101Scf13103g00010.1	sp|Q942D4|BURP3_ORYSJ	*-*-	BURP domain-containing protein 3	IPR004873 (BURP domain)	
Niben101Scf12024g00004.1	emb|CDY41148.1|	--*-	BnaA09g38670D [Brassica napus]		
Niben101Scf00777g04007.1	sp|A4FVJ7|RBM48_DANRE	*-**	RNA-binding protein 48	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03100g01005.1			Unknown protein		
Niben101Scf04535g02009.1			Unknown protein		
Niben101Scf06467g07008.1	sp|Q0WPE9|NAT7_ARATH	*-**	Nucleobase-ascorbate transporter 7	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03463g02006.1	sp|Q54NW0|ZNHI1_DICDI	***-	Zinc finger HIT domain-containing protein 1 homolog	IPR007529 (Zinc finger, HIT-type)	
Niben101Scf02502g06011.1	AT2G36835.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=124		
Niben101Scf06603g01008.1	ref|XP_002528691.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF33680.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06914g00014.1	sp|Q9FI61|UBC27_ARATH	***-	Ubiquitin-conjugating enzyme E2 27	IPR009060 (UBA-like), IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	GO:0005515 (protein binding)
Niben101Scf09387g00009.1	AT2G45180.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=134	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf06919g00024.1	sp|Q67ZB3|FRL3_ARATH	***-	FRIGIDA-like protein 3	IPR012474 (Frigida-like)	
Niben101Scf23825g00003.1	ref|NP_001063293.1|	*-*-	OsJ_29536 [Oryza sativa Japonica Group]		
Niben101Scf00317g04007.1	emb|CDY59295.1|	*-*-	BnaA06g40010D [Brassica napus]		
Niben101Scf07673g01009.1	AT1G66480.1	***-	plastid movement impaired 2 LENGTH=225	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf00883g01007.1	sp|Q9NP66|HM20A_HUMAN	--*-	High mobility group protein 20A		
Niben101Scf02807g11007.1	AT3G22200.2	****	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein LENGTH=513	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf30765g00002.1	sp|Q9LZX8|BIG2_ARATH	*-*-	Brefeldin A-inhibited guanine nucleotide-exchange protein 2		
Niben101Scf02294g02004.1			Unknown protein		
Niben101Scf13180g00001.1	ref|XP_002528523.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF33835.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02838g04006.1	sp|Q10FZ7|YAB2_ORYSJ	***-	Protein YABBY 2	IPR006780 (YABBY protein)	
Niben101Scf05800g01006.1	sp|Q9LMP7|GOS11_ARATH	****	Golgi SNAP receptor complex member 1-1	IPR023601 (Golgi SNAP receptor complex, subunit 1)	GO:0000139 (Golgi membrane), GO:0005801 (cis-Golgi network), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0016021 (integral component of membrane)
Niben101Scf07678g02001.1	sp|Q40704|MADS3_ORYSJ	****	MADS-box transcription factor 3	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07393g00023.1	sp|Q9LEX0|P2A13_ARATH	***-	F-box protein PP2-A13	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf05405g07006.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf04639g06012.1	AT2G47470.1	*-*-	thioredoxin family protein LENGTH=361	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf17180g00006.1	AT3G12620.1	****	Protein phosphatase 2C family protein LENGTH=385	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf02268g00002.1	AT5G10240.1	****	asparagine synthetase 3 LENGTH=578	IPR006426 (Asparagine synthase, glutamine-hydrolyzing), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004066 (asparagine synthase (glutamine-hydrolyzing) activity), GO:0006529 (asparagine biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf09501g00007.1	emb|CDY15270.1|	***-	BnaC05g01490D [Brassica napus]	IPR019002 (Ribosome biogenesis protein Nop16)	
Niben101Ctg15262g00002.1	emb|CDY26569.1|	--*-	BnaA09g47080D [Brassica napus]		
Niben101Scf01606g02011.1	sp|Q9FLU1|BIN4_ARATH	*-*-	DNA-binding protein BIN4		
Niben101Scf32247g00005.1	AT4G38290.1	*-**	Haemolysin-III related integral membrane protein LENGTH=108	IPR004254 (AdipoR/Haemolysin-III-related)	GO:0016021 (integral component of membrane)
Niben101Scf09767g00010.1	AT4G08810.1	***-	calcium ion binding LENGTH=552		
Niben101Scf00035g01004.1	sp|Q9LFC5|PP360_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Ctg10925g00004.1	sp|Q9FGI1|LTN1_ARATH	*-*-	E3 ubiquitin-protein ligase listerin		
Niben101Scf00262g04001.1	sp|O23081|CRK41_ARATH	*-**	Cysteine-rich receptor-like protein kinase 41	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04084g01002.1	emb|CDY49982.1|	--*-	BnaC03g34390D [Brassica napus]		
Niben101Scf00821g01005.1	sp|Q8L925|CRC_ARATH	***-	Protein CRABS CLAW	IPR006780 (YABBY protein)	
Niben101Scf05057g06007.1	sp|B3H672|PP317_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf00213g02019.1	AT1G74120.1	****	Mitochondrial transcription termination factor family protein LENGTH=445	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07169g02002.1	sp|Q0VFE7|DRS7B_XENTR	*-**	Dehydrogenase/reductase SDR family member 7B	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02929g06008.1	ref|YP_005090400.1|	***-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf11084g00005.1	sp|A2RNQ2|RL2_LACLM	*-*-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01374g01003.1	sp|B1JH01|GHRB_YERPY	****	Glyoxylate/hydroxypyruvate reductase B	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00963g01021.1	sp|Q3ECP6|GDL22_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf08326g00025.1	sp|Q9SGW3|PSD8A_ARATH	****	26S proteasome non-ATPase regulatory subunit 8 homolog A	IPR005062 (SAC3/GANP/Nin1/mts3/eIF-3 p25)	GO:0005838 (proteasome regulatory particle), GO:0006508 (proteolysis)
Niben101Scf01291g02005.1	sp|Q9T0A7|UGE2_ARATH	*-*-	UDP-glucose 4-epimerase 2	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf31667g00001.1			Unknown protein		
Niben101Scf06369g01003.1	sp|Q8L727|GSTT2_ARATH	*-*-	Glutathione S-transferase T2	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf09025g02007.1	ref|NP_001119407.1|	*-*-	protein kinase [Arabidopsis thaliana] gb|AED95927.1| protein kinase [Arabidopsis thaliana]		
Niben101Scf11497g02001.1	AT2G44310.1	****	Calcium-binding EF-hand family protein LENGTH=142	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf04327g00002.1	AT1G75760.1	****	ER lumen protein retaining receptor family protein LENGTH=272	IPR000133 (ER lumen protein retaining receptor)	GO:0006621 (protein retention in ER lumen), GO:0016021 (integral component of membrane), GO:0046923 (ER retention sequence binding)
Niben101Scf13577g00012.1			Unknown protein		
Niben101Scf03340g08011.1	AT3G14270.1	*-*-	phosphatidylinositol-4-phosphate 5-kinase family protein LENGTH=1791	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process)
Niben101Scf01697g18001.1	emb|CDY31678.1|	***-	BnaA05g08690D [Brassica napus]		
Niben101Scf28181g00009.1	sp|O42713|PPO2_AGABI	--**	Polyphenol oxidase 2	IPR008922 (Uncharacterised domain, di-copper centre), IPR016213 (Polyphenol oxidase)	GO:0004097 (catechol oxidase activity), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0046148 (pigment biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf08704g03007.1	sp|Q9FJY7|PP449_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf06423g03026.1	sp|Q9FG72|OPT1_ARATH	***-	Oligopeptide transporter 1	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf00964g05015.1	emb|CDY01186.1|	--*-	BnaA04g06330D [Brassica napus]		
Niben101Scf00683g03043.1	sp|Q6NKU9|TI223_ARATH	***-	Mitochondrial import inner membrane translocase subunit TIM22-3	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Scf12910g00005.1			Unknown protein		
Niben101Scf03403g01030.1			Unknown protein		
Niben101Scf03710g01012.1	AT4G16790.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=473	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf01692g05001.1	sp|Q32P99|UBE2B_BOVIN	--*-	Ubiquitin-conjugating enzyme E2 B	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR027230 (SUMO-conjugating enzyme Ubc9)	GO:0019789 (SUMO transferase activity)
Niben101Scf07428g02016.1	AT3G07270.1	****	GTP cyclohydrolase I LENGTH=466	IPR001474 (GTP cyclohydrolase I)	GO:0003934 (GTP cyclohydrolase I activity), GO:0005737 (cytoplasm), GO:0046654 (tetrahydrofolate biosynthetic process)
Niben101Scf04671g02002.1	sp|Q8BUM9|UBP43_MOUSE	*-**	Ubiquitin carboxyl-terminal hydrolase 43	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf04739g00009.1	sp|Q9H330|TM245_HUMAN	*-*-	Transmembrane protein 245	IPR002549 (Uncharacterised protein family UPF0118)	
Niben101Scf04861g01011.1	sp|Q9SCV9|BGAL3_ARATH	***-	Beta-galactosidase 3	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf16496g00003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01526g04015.1	AT1G32520.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 143 Blast hits to 142 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). LENGTH=239	IPR006571 (TLDc domain)	
Niben101Scf00712g05029.1	AT2G44750.2	****	thiamin pyrophosphokinase 2 LENGTH=267	IPR006282 (Thiamin pyrophosphokinase)	GO:0004788 (thiamine diphosphokinase activity), GO:0005524 (ATP binding), GO:0006772 (thiamine metabolic process), GO:0009229 (thiamine diphosphate biosynthetic process), GO:0030975 (thiamine binding)
Niben101Scf09092g01008.1			Unknown protein		
Niben101Scf03401g00002.1	emb|CDY62005.1|	***-	BnaCnng38950D [Brassica napus]		
Niben101Scf06266g00002.1	sp|Q55276|LCYB_SYNE7	***-	Lycopene beta cyclase	IPR008671 (Lycopene cyclase-type, FAD-binding)	GO:0016117 (carotenoid biosynthetic process), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen)
Niben101Scf05881g02023.1	gb|AAM60957.1|	*-*-	RING-H2 zinc finger protein-like [Arabidopsis thaliana]		
Niben101Scf10384g00014.1	sp|O82012|HSP12_SOLPE	***-	17.6 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf02767g01005.1	sp|A1DLN3|SEC16_NEOFI	*-**	COPII coat assembly protein sec16	IPR024880 (COPII coat assembly protein, Sec16)	GO:0048208 (COPII vesicle coating)
Niben101Scf00350g04010.1	ref|XP_002302027.2|	*-*-	isoflavone reductase family protein [Populus trichocarpa] gb|EEE81300.2| isoflavone reductase family protein [Populus trichocarpa]		
Niben101Scf14625g02006.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf17044g01018.1	sp|P0A0A1|ODPB_STAAM	****	Pyruvate dehydrogenase E1 component subunit beta	IPR005475 (Transketolase-like, pyrimidine-binding domain), IPR005476 (Transketolase, C-terminal), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR027110 (Pyruvate dehydrogenase E1 component subunit beta), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0004739 (pyruvate dehydrogenase (acetyl-transferring) activity), GO:0006086 (acetyl-CoA biosynthetic process from pyruvate), GO:0008152 (metabolic process)
Niben101Scf03020g00009.1	AT1G47670.1	***-	Transmembrane amino acid transporter family protein LENGTH=519	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf11779g01002.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02042g01010.1	AT2G24950.1	*-*-	Protein of Unknown Function (DUF239) LENGTH=411	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf15391g05004.1	sp|Q9ZUN5|TET2_ARATH	***-	Tetraspanin-2	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf03468g02008.1	sp|P40069|IMB4_YEAST	***-	Importin subunit beta-4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf00211g00046.1	gb|AAF27285.1|	*-*-	eukaryotic initiation factor 4B [Arabidopsis thaliana]	IPR010433 (Plant specific eukaryotic initiation factor 4B)	
Niben101Scf02853g00011.1	ref|XP_002522368.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF40052.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf02819g04003.1	sp|Q7UA76|DNAJ_SYNPX	*-*-	Chaperone protein DnaJ	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain), IPR001623 (DnaJ domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf03325g01002.1			Unknown protein		
Niben101Scf03852g00025.1	sp|Q03164|KMT2A_HUMAN	*-**	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR003105 (SRA-YDG), IPR003616 (Post-SET domain), IPR007728 (Pre-SET domain), IPR015947 (PUA-like domain), IPR025794 (Histone H3-K9 methyltransferase, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016571 (histone methylation), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0042393 (histone binding)
Niben101Scf10202g00009.1	sp|B5YFY8|RNPH_THEYD	***-	Ribonuclease PH	IPR015847 (Exoribonuclease, phosphorolytic domain 2), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027408 (PNPase/RNase PH domain)	
Niben101Scf01767g02012.1	sp|P46217|RPOL_SULAC	--**	DNA-directed RNA polymerase subunit L	IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf04505g04006.1	sp|P15349|RPOA1_HALMO	*-**	DNA-directed RNA polymerase subunit A'	IPR015699 (DNA-directed RNA pol I, largest subunit)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf09742g00015.1	ref|NP_200590.1|	--**	zinc ion binding protein [Arabidopsis thaliana] dbj|BAB08852.1| unnamed protein product [Arabidopsis thaliana] gb|AED96956.1| zinc ion binding protein [Arabidopsis thaliana]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07953g01010.1	AT1G03760.1	*-*-	Prefoldin chaperone subunit family protein LENGTH=391	IPR009053 (Prefoldin)	
Niben101Scf00894g01014.1	AT1G16190.1	****	Rad23 UV excision repair protein family LENGTH=368	IPR004806 (UV excision repair protein Rad23), IPR009060 (UBA-like), IPR029071 (Ubiquitin-related domain)	GO:0003684 (damaged DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006289 (nucleotide-excision repair), GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
Niben101Scf03278g04009.1	AT3G15030.1	*-*-	TCP family transcription factor 4 LENGTH=420	IPR005333 (Transcription factor, TCP)	
Niben101Scf03031g04009.1	sp|Q9ZQI8|NLTL2_ARATH	*-*-	Non-specific lipid-transfer protein-like protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00262g00005.1	sp|Q9ZVE0|ORN_ARATH	***-	Oligoribonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf01841g03001.1	sp|Q86WB7|UN93A_HUMAN	***-	Protein unc-93 homolog A	IPR010291 (Ion channel regulatory protein, UNC-93), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf01729g01002.1	AT4G11960.1	***-	PGR5-like B LENGTH=313		
Niben101Scf08179g01015.1	sp|B8HP54|ATPE_CYAP4	*-**	ATP synthase epsilon chain	IPR001469 (ATPase, F1 complex, delta/epsilon subunit)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf00254g06003.1	sp|Q9CAJ9|Y1385_ARATH	***-	BTB/POZ domain-containing protein	IPR000210 (BTB/POZ-like)	GO:0005515 (protein binding)
Niben101Scf02752g01013.1	emb|CDY44792.1|	*-*-	BnaC02g00950D [Brassica napus]		
Niben101Scf04234g00006.1	sp|Q8GWK7|BEE3_ARATH	--*-	Transcription factor BEE 3		
Niben101Scf04539g00003.1	AT5G26030.1	****	ferrochelatase 1 LENGTH=466	IPR001015 (Ferrochelatase)	GO:0004325 (ferrochelatase activity), GO:0006783 (heme biosynthetic process)
Niben101Scf01797g03038.1	sp|Q9M2Z5|FBL53_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf02400g00007.1	AT2G44830.1	****	Protein kinase superfamily protein LENGTH=765	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf20914g00005.1			Unknown protein		
Niben101Scf00663g00009.1	sp|Q9LVC9|RLA32_ARATH	*-*-	60S acidic ribosomal protein P3-2	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf07829g04009.1	AT5G19420.2	***-	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain LENGTH=1139	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR011993 (Pleckstrin homology-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0046872 (metal ion binding)
Niben101Scf02971g04001.1	sp|Q10Y41|GLO2_TRIEI	***-	Hydroxyacylglutathione hydrolase	IPR001279 (Beta-lactamase-like)	
Niben101Scf00130g08007.1	sp|P29829|GBB2_DROME	*-**	Guanine nucleotide-binding protein subunit beta-2	IPR006594 (LisH dimerisation motif), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01852g04031.1	AT4G38900.1	****	Basic-leucine zipper (bZIP) transcription factor family protein LENGTH=553	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00126g05007.1	AT1G77720.1	****	putative protein kinase 1 LENGTH=777	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00859g04007.1	sp|Q9LNI5|ETC1_ARATH	--*-	MYB-like transcription factor ETC1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf16406g00009.1	sp|Q568T4|HIKES_DANRE	***-	Protein Hikeshi	IPR008493 (Protein of unknown function DUF775)	
Niben101Scf02074g00057.1	sp|P41186|RS4_BUCAP	--*-	30S ribosomal protein S4	IPR002942 (RNA-binding S4 domain), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding)
Niben101Scf07229g00006.1	sp|A1A4K5|ENPP2_BOVIN	*-*-	Ectonucleotide pyrophosphatase/phosphodiesterase family member 2	IPR002591 (Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04797g00022.1	sp|Q55389|FTRC_SYNY3	****	Ferredoxin-thioredoxin reductase, catalytic chain	IPR004209 (Ferredoxin thioredoxin reductase beta subunit, domain), IPR024707 (Ferredoxin-thioredoxin reductase, beta subunit)	GO:0016730 (oxidoreductase activity, acting on iron-sulfur proteins as donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03734g03002.1	gb|AES60662.2|	****	threonine dehydratase biosynthetic protein [Medicago truncatula]	IPR001721 (ACT-like domain), IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme), IPR005787 (Threonine dehydratase, biosynthetic)	GO:0004794 (L-threonine ammonia-lyase activity), GO:0006520 (cellular amino acid metabolic process), GO:0009097 (isoleucine biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf09157g00015.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein		
Niben101Scf26120g00001.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf03852g00026.1	sp|P57057|GLPT_HUMAN	****	Glycerol-3-phosphate transporter	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf06394g00009.1	sp|P40149|OXC_OXAFO	***-	Oxalyl-CoA decarboxylase	IPR011766 (Thiamine pyrophosphate enzyme, C-terminal TPP-binding), IPR012001 (Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain), IPR029035 (DHS-like NAD/FAD-binding domain), IPR029061 (Thiamin diphosphate-binding fold)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0030976 (thiamine pyrophosphate binding)
Niben101Scf00635g01009.1	sp|P49044|VPE_VICSA	*-*-	Vacuolar-processing enzyme	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02479g03009.1	AT3G54040.1	***-	PAR1 protein LENGTH=183	IPR009489 (PAR1)	
Niben101Scf06218g07010.1	emb|CDX73190.1|	***-	BnaC06g36380D [Brassica napus]		
Niben101Scf01108g02006.1	sp|Q7ZU90|CHD1L_DANRE	*-*-	Chromodomain-helicase-DNA-binding protein 1-like	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01001g07032.1	sp|Q9SR43|PFBS_ARATH	*-*-	Phytochromobilin:ferredoxin oxidoreductase, chloroplastic		
Niben101Scf01085g02014.1	sp|Q8SQK0|PRS8_ENCCU	***-	26S protease regulatory subunit 8 homolog	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf03079g01011.1	sp|O80961|MLO12_ARATH	*-*-	MLO-like protein 12	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf02767g01004.1	ref|XP_003611309.1|	*-**	COPII coat assembly protein sec16 [Medicago truncatula]	IPR024340 (Sec16, central conserved domain), IPR024880 (COPII coat assembly protein, Sec16)	GO:0048208 (COPII vesicle coating)
Niben101Ctg15296g00003.1	sp|Q9XFW4|LPAT2_BRANA	***-	1-acyl-sn-glycerol-3-phosphate acyltransferase 2		
Niben101Scf05351g00032.1	AT1G07420.1	***-	sterol 4-alpha-methyl-oxidase 2-1 LENGTH=266	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05566g03009.1	emb|CDY53602.1|	*-*-	BnaC09g51900D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf02569g01003.1	AT1G62810.1	*-**	Copper amine oxidase family protein LENGTH=712	IPR000269 (Copper amine oxidase)	GO:0005507 (copper ion binding), GO:0008131 (primary amine oxidase activity), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08698g02022.1	sp|P46300|RS4_SOLTU	***-	40S ribosomal protein S4	IPR000876 (Ribosomal protein S4e)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf17691g00004.1	sp|Q9FG35|TBR_ARATH	*-*-	Protein trichome birefringence	IPR026057 (PC-Esterase)	
Niben101Scf01082g02017.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02381g08018.1	sp|Q6IRP4|ABHDD_XENLA	***-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03687g00010.1	sp|Q12220|UTP12_YEAST	--*-	U3 small nucleolar RNA-associated protein 12	IPR012952 (BING4, C-terminal domain), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf10332g01007.1	sp|Q9SYL0|BT3_ARATH	***-	BTB/POZ and TAZ domain-containing protein 3	IPR000197 (Zinc finger, TAZ-type), IPR011333 (BTB/POZ fold)	GO:0003712 (transcription cofactor activity), GO:0004402 (histone acetyltransferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf01293g05001.1	sp|Q6C044|ATG18_YARLI	***-	Autophagy-related protein 18	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00854g10025.1	sp|Q04716|RT03_PETHY	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf03504g04002.1			Unknown protein		
Niben101Scf03245g08018.1	AT3G19770.1	***-	Vacuolar sorting protein 9 (VPS9) domain LENGTH=520	IPR003123 (Vacuolar sorting protein 9)	
Niben101Scf11491g00012.1	AT3G18360.1	*-*-	VQ motif-containing protein LENGTH=285	IPR008889 (VQ)	
Niben101Scf06091g05002.1	AT1G19780.1	****	cyclic nucleotide gated channel 8 LENGTH=753	IPR000048 (IQ motif, EF-hand binding site), IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0005515 (protein binding), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03164g02004.1	sp|Q8S3D1|BH068_ARATH	*-*-	Transcription factor bHLH68		
Niben101Scf03152g00012.1	ref|XP_007014605.1|	***-	Transducin/WD40 repeat-like superfamily protein isoform 1 [Theobroma cacao] gb|EOY32224.1| Transducin/WD40 repeat-like superfamily protein isoform 1 [Theobroma cacao]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01538g05005.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00854g11097.1			Unknown protein		
Niben101Scf03766g09001.1	sp|P46510|CAHX_FLABI	***-	Carbonic anhydrase	IPR001765 (Carbonic anhydrase)	GO:0004089 (carbonate dehydratase activity), GO:0008270 (zinc ion binding), GO:0015976 (carbon utilization)
Niben101Scf00597g08019.1	sp|A8ACD2|RL14_IGNH4	***-	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	
Niben101Scf01849g03015.1	sp|Q9S7M9|P24B2_ARATH	*-*-	Transmembrane emp24 domain-containing protein p24beta2		
Niben101Scf00749g04013.1	sp|P46302|RS28_MAIZE	***-	40S ribosomal protein S28	IPR000289 (Ribosomal protein S28e), IPR028626 (Ribosomal protein S28e conserved site)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02562g03017.1	emb|CDY36160.1|	*-*-	BnaC04g37340D [Brassica napus]	IPR008502 (Prolamin-like domain)	
Niben101Ctg12546g00002.1	ref|XP_007010351.1|	--*-	Polynucleotidyl transferase, putative [Theobroma cacao] gb|EOY19161.1| Polynucleotidyl transferase, putative [Theobroma cacao]		
Niben101Scf00157g00004.1	ref|NP_001266269.1|	--*-	chordin [Solanum lycopersicum] gb|ABA18635.1| inducible plastid-lipid associated protein [Solanum lycopersicum]		
Niben101Scf39524g00001.1	sp|Q5W041|ARMC3_HUMAN	--*-	Armadillo repeat-containing protein 3	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf06671g02014.1	sp|Q11180|WHT1_CAEEL	****	ABC transporter ATP-binding protein/permease wht-1	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf01374g01004.1	emb|CDY30134.1|	***-	BnaC05g37280D [Brassica napus]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf01124g13004.1	sp|Q5BH58|LONP2_EMENI	--*-	Lon protease homolog 2, peroxisomal		
Niben101Scf00047g02014.1	sp|Q6ZY51|PWD_ARATH	***-	Phosphoglucan, water dikinase, chloroplastic		
Niben101Scf11663g00009.1			Unknown protein		
Niben101Scf00226g00007.1	sp|Q9LN49|KCS4_ARATH	***-	3-ketoacyl-CoA synthase 4	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf05004g04029.1	gb|KEH25033.1|	*-**	plant calmodulin-binding-like protein [Medicago truncatula]	IPR012417 (Calmodulin-binding domain, plant)	GO:0005516 (calmodulin binding)
Niben101Ctg02350g00002.1	sp|Q2HJG2|PUF60_BOVIN	--**	Poly(U)-binding-splicing factor PUF60	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR029123 (Splicing factor RBM39, linker)	GO:0000166 (nucleotide binding)
Niben101Scf06120g00008.1	sp|Q91YR7|PRP6_MOUSE	****	Pre-mRNA-processing factor 6	IPR010491 (PRP1 splicing factor, N-terminal), IPR011990 (Tetratricopeptide-like helical domain), IPR027108 (Pre-mRNA-processing factor 6/Prp1/STA1)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006396 (RNA processing)
Niben101Scf13260g00002.1			Unknown protein		
Niben101Scf04457g02002.1	sp|Q9LS40|ASPG1_ARATH	--*-	Protein ASPARTIC PROTEASE IN GUARD CELL 1		
Niben101Scf07611g00010.1	sp|Q95BZ7|MATK_ACTDE	***-	Maturase K	IPR002866 (Maturase MatK), IPR024937 (Domain X), IPR024942 (Maturase MatK, N-terminal domain)	GO:0006397 (mRNA processing), GO:0009507 (chloroplast)
Niben101Scf13141g00014.1	sp|P40934|CYB5_BRAOB	***-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf00182g05012.1	ref|XP_007014571.1|	***-	3-ph kinase-1, putative isoform 1 [Theobroma cacao]		
Niben101Scf12214g00007.1	sp|P81391|MYB05_ANTMA	*-*-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00326g01011.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf23239g00002.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf22566g00021.1	sp|Q9M0Y8|NSF_ARATH	*-*-	Vesicle-fusing ATPase		
Niben101Scf02832g02007.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf07346g00001.1	gb|AGS78073.1|	*-*-	legume-specific protein [Aeschynomene indica]		
Niben101Scf05554g07010.1	AT3G16510.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=360	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf04209g00004.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf03018g05011.1	sp|Q9FYE1|MCA9_ARATH	***-	Metacaspase-9	IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00270g14002.1	sp|Q3L181|PERR_RAUSE	***-	Perakine reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf01052g05008.1	sp|Q9FG71|EMC89_ARATH	***-	ER membrane protein complex subunit 8/9 homolog	IPR005366 (Uncharacterised protein family UPF0172)	
Niben101Scf02539g01001.1	sp|D1I234|DRE2_VITVI	***-	Anamorsin homolog	IPR007785 (Anamorsin), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005737 (cytoplasm), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf00851g05006.1	gb|ADE43115.1|	*-*-	restricted tev movement 2 [Arabidopsis thaliana]	IPR008978 (HSP20-like chaperone)	
Niben101Scf04871g05007.1	AT2G45260.1	***-	Plant protein of unknown function (DUF641) LENGTH=425	IPR006943 (Domain of unknown function DUF641, plant)	
Niben101Scf09284g01011.1	AT5G46920.1	*-*-	Intron maturase, type II family protein LENGTH=735	IPR000477 (Reverse transcriptase domain)	
Niben101Scf02809g00008.1	emb|CDY50332.1|	***-	BnaA10g13650D [Brassica napus]	IPR012862 (Protein of unknown function DUF1635)	
Niben101Scf00313g01003.1	sp|Q9FKI0|FIMB5_ARATH	***-	Fimbrin-5	IPR001715 (Calponin homology domain), IPR011992 (EF-hand domain pair)	GO:0005515 (protein binding)
Niben101Scf04350g05010.1			Unknown protein		
Niben101Scf02763g05019.1	AT2G06005.1	***-	FRIGIDA interacting protein 1 LENGTH=355		
Niben101Scf09442g02012.1	AT4G35690.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=284	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf06955g04018.1	ref|XP_002531893.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF30492.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01991g03010.1	AT5G16120.2	***-	alpha/beta-Hydrolases superfamily protein LENGTH=369	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00448g21006.1	sp|Q8T197|DHRS7_DICDI	****	Dehydrogenase/reductase SDR family protein 7-like	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf06473g00011.1	sp|A3AHG5|LEA1_ORYSJ	*-*-	Late embryogenesis abundant protein 1	IPR004238 (Late embryogenesis abundant protein, LEA-3)	
Niben101Scf01949g00005.1	gb|AFO69204.1|	****	ATPase subunit 8 (mitochondrion) [Gossypium hirsutum]	IPR009455 (ATP synthase YMF19, uncharacterised, C-terminal)	GO:0005739 (mitochondrion), GO:0016021 (integral component of membrane), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances)
Niben101Scf11232g00002.1	sp|P41111|EI2BD_RABIT	***-	Translation initiation factor eIF-2B subunit delta	IPR000649 (Initiation factor 2B-related)	GO:0044237 (cellular metabolic process)
Niben101Scf04384g05008.1	sp|Q9SJ73|PP148_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf03934g01019.1	AT3G04300.1	***-	RmlC-like cupins superfamily protein LENGTH=96	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf00922g00009.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11084g02025.1	AT2G41500.1	***-	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related LENGTH=554	IPR014906 (Pre-mRNA processing factor 4 (PRP4)-like), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR027106 (U4/U6 small nuclear ribonucleoprotein Prp4)	GO:0005515 (protein binding), GO:0008380 (RNA splicing)
Niben101Scf02385g00001.1	sp|Q9S9N9|CCR1_ARATH	--*-	Cinnamoyl-CoA reductase 1	IPR016040 (NAD(P)-binding domain)	
Niben101Scf08617g00004.1	sp|F4JIF5|TCX2_ARATH	*-*-	Protein tesmin/TSO1-like CXC 2	IPR005172 (CRC domain), IPR028307 (Lin-54 family)	
Niben101Scf06467g07009.1	sp|P93039|NAT4_ARATH	*-**	Nucleobase-ascorbate transporter 4	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02990g02012.1			Unknown protein		
Niben101Scf04788g00025.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf03167g01009.1	sp|O64896|TPPA_ARATH	****	Trehalose-phosphate phosphatase A	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf01221g19012.1	sp|Q8K9H6|DEAD_BUCAP	*-**	ATP-dependent RNA helicase DeaD	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01164g00008.1	sp|Q3ED65|MENG_ARATH	*-*-	2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic		
Niben101Scf04193g06012.1	sp|O82268|LSH3_ARATH	*-*-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3	IPR006936 (ALOG domain)	
Niben101Scf05463g01007.1	AT1G20430.1	***-	unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=116		
Niben101Scf06172g00013.1	AT5G15100.1	***-	Auxin efflux carrier family protein LENGTH=367	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf05341g02002.1			Unknown protein		
Niben101Scf11688g01018.1	sp|Q93YU5|SEC8_ARATH	****	Exocyst complex component SEC8	IPR007191 (Sec8 exocyst complex component specific domain)	GO:0000145 (exocyst), GO:0006904 (vesicle docking involved in exocytosis), GO:0015031 (protein transport)
Niben101Scf11078g01009.1	sp|O82530|PSA4_PETHY	*-**	Proteasome subunit alpha type-4	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf02069g01019.1	sp|Q9SUP7|HMGB6_ARATH	***-	High mobility group B protein 6	IPR009071 (High mobility group box domain)	
Niben101Scf02074g01075.1			Unknown protein		
Niben101Scf11495g00003.1	sp|Q3KPR1|C1D_XENLA	*-*-	Nuclear nucleic acid-binding protein C1D	IPR007146 (Sas10/Utp3/C1D), IPR011082 (Exosome-associated factor Rrp47/DNA strand repair C1D)	
Niben101Scf02168g04008.1	AT5G19760.1	***-	Mitochondrial substrate carrier family protein LENGTH=298	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf02854g10007.1	AT1G74180.1	*-*-	receptor like protein 14 LENGTH=976	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf01013g00001.1	sp|Q9SZL8|FRS5_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 5	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf02232g04001.1	gb|KFB84164.1|	***-	alpha/beta hydrolase [Calothrix sp. 336/3]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf08898g00003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02709g04001.1	AT3G06350.1	****	dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative LENGTH=603	IPR013708 (Shikimate dehydrogenase substrate binding, N-terminal), IPR013785 (Aldolase-type TIM barrel), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0003855 (3-dehydroquinate dehydratase activity), GO:0004764 (shikimate 3-dehydrogenase (NADP+) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08478g06019.1	sp|Q9ZU91|E133_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 3	IPR012946 (X8 domain)	
Niben101Scf00586g00010.1			Unknown protein		
Niben101Scf10278g03008.1	sp|E9QAU8|RN165_MOUSE	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00150g02012.1	AT4G08810.1	***-	calcium ion binding LENGTH=552		
Niben101Scf03710g04013.1	AT4G17420.1	*-*-	Tryptophan RNA-binding attenuator protein-like LENGTH=285	IPR002838 (Mitochondrial biogenesis protein AIM24), IPR016031 (Tryptophan RNA-binding attenuator protein-like domain)	
Niben101Scf06684g00007.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04754g03007.1	sp|B7ZR30|STK10_XENLA	*-**	Serine/threonine-protein kinase 10-A	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00984g10002.1	emb|CDY13349.1|	***-	BnaC06g14080D [Brassica napus]		
Niben101Scf02379g02006.1	sp|Q9NRZ5|PLCD_HUMAN	*-**	1-acyl-sn-glycerol-3-phosphate acyltransferase delta	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf07391g01006.1	sp|F4JP36|HAP2_ARATH	***-	Protein HAPLESS 2	IPR018928 (Generative cell specific-1, HAP2-GCS1)	
Niben101Scf00135g04008.1	AT4G34730.1	***-	ribosome-binding factor A family protein LENGTH=215	IPR000238 (Ribosome-binding factor A), IPR015946 (K homology domain-like, alpha/beta)	GO:0006364 (rRNA processing)
Niben101Scf28259g00017.1	sp|Q8LG03|FB345_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02798g00031.1	ref|XP_002536610.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF25773.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01735g02011.1	sp|O23470|GDL64_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02656g02002.1	ref|XP_003597012.1|	*-*-	TdcA1-ORF2 protein [Medicago truncatula]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf02726g00003.1	AT3G54700.1	****	phosphate transporter 1;7 LENGTH=535	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03872g02025.1	AT5G60800.2	****	Heavy metal transport/detoxification superfamily protein LENGTH=302	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf04339g08009.1	ref|WP_016786451.1|	--*-	Nex18 symbiotically induced protein [Vibrio cyclitrophicus]	IPR000782 (FAS1 domain)	
Niben101Scf03848g10007.1	AT1G04940.1	***-	translocon at the inner envelope membrane of chloroplasts 20 LENGTH=274		
Niben101Scf01529g00013.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2	IPR000760 (Inositol monophosphatase)	GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf02077g10001.1	sp|Q96499|RL44_GOSHI	***-	60S ribosomal protein L44	IPR000552 (Ribosomal protein L44e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05158g01008.1	AT1G15550.1	*-*-	gibberellin 3-oxidase 1 LENGTH=358	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf09703g02014.1	sp|Q9XSR3|RBM47_CANFA	*-**	RNA-binding protein 47	IPR001202 (WW domain), IPR002343 (Paraneoplastic encephalomyelitis antigen), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005515 (protein binding)
Niben101Scf02929g00038.1			Unknown protein		
Niben101Scf10415g02007.1	sp|G3CCC1|CABS_TOBAC	--*-	Cis-abienol synthase, chloroplastic		
Niben101Scf01334g06002.1	AT5G22580.1	***-	Stress responsive A/B Barrel Domain LENGTH=111	IPR011008 (Dimeric alpha-beta barrel)	
Niben101Scf01065g08009.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11303g01009.1			Unknown protein		
Niben101Scf11909g00006.1	sp|Q3ZC01|CNOT7_BOVIN	***-	CCR4-NOT transcription complex subunit 7	IPR006941 (Ribonuclease CAF1), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Scf03757g05003.1	AT5G50780.1	*-*-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=819		
Niben101Scf00288g07002.1	sp|Q9FGH6|CHX25_ARATH	*-**	Cation/H(+) antiporter 25	IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf03015g07002.1	sp|Q9M884|MPI1_ARATH	****	Mannose-6-phosphate isomerase 1	IPR001250 (Mannose-6-phosphate isomerase, type I)	GO:0004476 (mannose-6-phosphate isomerase activity), GO:0005975 (carbohydrate metabolic process), GO:0008270 (zinc ion binding), GO:0009298 (GDP-mannose biosynthetic process)
Niben101Scf02243g00008.1	sp|C0LU16|MED21_ARATH	***-	Mediator of RNA polymerase II transcription subunit 21	IPR021384 (Mediator complex, subunit Med21)	
Niben101Scf01548g00017.1	AT2G05250.1	*-*-	DNAJ heat shock N-terminal domain-containing protein LENGTH=706	IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf02465g00011.1	sp|Q9FPQ8|KNAT7_ARATH	***-	Homeobox protein knotted-1-like 7	IPR005540 (KNOX1), IPR005541 (KNOX2), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07895g04011.1	sp|P81394|MYB15_ANTMA	*-*-	Myb-related protein 315	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Ctg12085g00001.1	AT5G19900.1	*-*-	PRLI-interacting factor, putative LENGTH=494		
Niben101Scf09696g00047.1	sp|P07506|COX1_SOYBN	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04950g03011.1	sp|Q9S7Y1|BH030_ARATH	*-*-	Transcription factor bHLH30	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01295g05006.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04193g05002.1	sp|P27898|MYBP_MAIZE	*-*-	Myb-related protein P	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00471g00002.1	AT5G17660.1	****	tRNA (guanine-N-7) methyltransferase LENGTH=312	IPR003358 (tRNA (guanine-N-7) methyltransferase, Trmb type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006400 (tRNA modification), GO:0008176 (tRNA (guanine-N7-)-methyltransferase activity)
Niben101Scf04099g01006.1	AT3G48240.1	***-	Octicosapeptide/Phox/Bem1p family protein LENGTH=180	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf05300g02013.1	sp|O64982|PRS7_PRUPE	***-	26S protease regulatory subunit 7	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00885g02017.1	AT4G18372.1	***-	Small nuclear ribonucleoprotein family protein LENGTH=112	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf10737g00008.1	sp|P42791|RL182_ARATH	***-	60S ribosomal protein L18-2	IPR000039 (Ribosomal protein L18e), IPR021131 (Ribosomal protein L18e/L15P)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02360g03028.1	sp|Q86MW9|SINA_SCHMA	****	E3 ubiquitin-protein ligase sina	IPR004162 (E3 ubiquitin-protein ligase SINA like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf01124g22007.1	sp|P42784|CTPA_SYNP2	***-	Carboxyl-terminal-processing protease	IPR001478 (PDZ domain), IPR029045 (ClpP/crotonase-like domain)	GO:0005515 (protein binding), GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf03867g02006.1	sp|Q39266|ZFP7_ARATH	--*-	Zinc finger protein 7	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf07533g01002.1	sp|Q91790|DUS1A_XENLA	*-**	Dual specificity protein phosphatase 1-A	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf02034g04018.1	sp|A2Y0Q2|ALFL1_ORYSI	*-*-	PHD finger protein ALFIN-LIKE 1	IPR021998 (Alfin)	GO:0006355 (regulation of transcription, DNA-templated), GO:0042393 (histone binding)
Niben101Scf01371g03011.1	sp|Q10Q08|RFA1B_ORYSJ	*-*-	Replication protein A 70 kDa DNA-binding subunit B	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf11116g00008.1	sp|Q7XHI9|BH084_ARATH	*-*-	Transcription factor bHLH84	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02133g10015.1	sp|Q9LVQ4|Y5586_ARATH	***-	WEB family protein	IPR008545 (WEB family)	
Niben101Scf06687g03004.1	ref|NP_001185047.1|	--*-	F-box and associated interaction domain-containing protein [Arabidopsis thaliana] gb|AEE30016.1| F-box and associated interaction domain-containing protein [Arabidopsis thaliana]	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01633g00004.1	sp|P22413|ENPP1_HUMAN	*-*-	Ectonucleotide pyrophosphatase/phosphodiesterase family member 1	IPR002591 (Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00797g09010.1	sp|Q54G07|SLMO_DICDI	***-	Protein slowmo homolog	IPR006797 (PRELI/MSF1)	
Niben101Scf12280g01008.1	sp|A8GLB1|FIEF_SERP5	--**	Cation-efflux pump FieF	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain), IPR027470 (Cation efflux protein cytoplasmic domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03029g03001.1	sp|Q42608|PME_BRACM	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf08921g02024.1	sp|Q7XR52|CYSP1_ORYSJ	****	Cysteine protease 1	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf07402g03004.1	AT5G17190.1	****	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf02971g05014.1			Unknown protein		
Niben101Scf01001g03001.1			Unknown protein		
Niben101Scf07030g08003.1	AT3G26320.1	***-	cytochrome P450, family 71, subfamily B, polypeptide 36 LENGTH=500	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00127g01001.1			Unknown protein		
Niben101Scf06815g00008.1	sp|Q96520|PER12_ARATH	****	Peroxidase 12	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01240g06003.1	sp|Q02921|NO93_SOYBN	***-	Early nodulin-93	IPR005050 (Early nodulin 93 ENOD93 protein)	
Niben101Scf11611g00011.1			Unknown protein		
Niben101Scf01177g01003.1	sp|Q9MAT6|HMG15_ARATH	***-	High mobility group B protein 15	IPR001606 (ARID DNA-binding domain), IPR009071 (High mobility group box domain)	GO:0003677 (DNA binding)
Niben101Scf01091g00031.1	sp|Q08237|REXO4_YEAST	****	RNA exonuclease 4	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Ctg08400g00001.1	AT1G49740.1	***-	PLC-like phosphodiesterases superfamily protein LENGTH=359	IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain)	GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Scf01764g01014.1	sp|Q9SSM3|JAL19_ARATH	***-	Jacalin-related lectin 19	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf09433g00001.1	gb|AAG24616.1|AF298594_1	*-*-	arabinogalactan protein [Nicotiana alata]		
Niben101Scf01463g07004.1	sp|Q9SVP7|PP307_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06148g00004.1	sp|Q8LPL2|PTR32_ARATH	***-	Protein NRT1/ PTR FAMILY 1.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Ctg15364g00004.1	emb|CDY31062.1|	***-	BnaA08g26120D [Brassica napus]		
Niben101Scf07515g02007.1	sp|Q3EBY8|FB111_ARATH	--*-	F-box protein		
Niben101Scf08167g02002.1	ref|XP_002513964.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF48547.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01353g02014.1	sp|P42124|EZ_DROME	*-*-	Histone-lysine N-methyltransferase E(z)	IPR001214 (SET domain)	GO:0005515 (protein binding)
Niben101Scf04198g04004.1	sp|P77966|GYRB_SYNY3	*-**	DNA gyrase subunit B	IPR001241 (DNA topoisomerase, type IIA)	GO:0003677 (DNA binding), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0006265 (DNA topological change)
Niben101Scf13537g00004.1			Unknown protein		
Niben101Scf03538g05011.1	AT5G08250.1	*-*-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01897g08006.1	AT3G08890.1	***-	Protein of unknown function, DUF538 LENGTH=170	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf01994g01008.1	AT5G02810.1	*-*-	pseudo-response regulator 7 LENGTH=727		
Niben101Scf01495g01013.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01959g03004.1			Unknown protein		
Niben101Scf07382g00002.1	sp|B5X8M4|BRCC3_SALSA	*-*-	Lys-63-specific deubiquitinase BRCC36	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR008896 (Uncharacterised protein family Ycf1)	GO:0005515 (protein binding)
Niben101Scf06942g02028.1	AT1G07030.1	*-*-	Mitochondrial substrate carrier family protein LENGTH=326	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf08844g00015.1	emb|CDX78062.1|	***-	BnaA09g32570D [Brassica napus]		
Niben101Scf08273g04002.1	AT4G19420.1	***-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf03052g00023.1	sp|Q9M302|PP270_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04109g07001.1	sp|Q32L78|TPC6B_BOVIN	***-	Trafficking protein particle complex subunit 6B	IPR007194 (Transport protein particle (TRAPP) component), IPR024096 (NO signalling/Golgi transport  ligand-binding domain)	
Niben101Scf05694g00009.1	sp|Q9ZSD4|SY121_ARATH	***-	Syntaxin-121	IPR010989 (t-SNARE)	GO:0005515 (protein binding), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Ctg14007g00002.1	AT1G72790.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=561		
Niben101Scf02071g00004.1	sp|Q9LPI5|CID11_ARATH	****	Polyadenylate-binding protein-interacting protein 11	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01179g00010.1	sp|Q5ZL91|INT7_CHICK	*-*-	Integrator complex subunit 7		
Niben101Scf05340g00003.1	sp|O82491|SPT16_ARATH	*-*-	FACT complex subunit SPT16	IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	
Niben101Scf03206g01008.1	sp|Q653H7|ARFR_ORYSJ	****	Auxin response factor 18	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf05268g00006.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf00509g00030.1	sp|P02957|PSBA_SOYBN	****	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf10200g01003.1			Unknown protein		
Niben101Scf01453g05006.1	ref|WP_017325952.1|	--*-	high light inducible protein [Synechococcus sp. PCC 7336]	IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf00885g00004.1	sp|Q49SP5|TPGAS_POGCB	*-**	Germacrene A synthase	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf05066g00001.1	AT5G13250.1	*-*-	RING finger protein LENGTH=387		
Niben101Scf12690g01004.1	gb|AFN71045.1|	*-*-	cycloidea-like protein group 1A, partial [Lupinus microcarpus]	IPR005333 (Transcription factor, TCP)	
Niben101Scf05732g04012.1	sp|Q9Y535|RPC8_HUMAN	****	DNA-directed RNA polymerase III subunit RPC8	IPR005576 (RNA polymerase Rpb7, N-terminal), IPR013238 (RNA polymerase III, subunit Rpc25)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf04893g01006.1			Unknown protein		
Niben101Scf12516g02006.1	sp|Q2Z2E9|SCR_IPONI	*-*-	Protein SCARECROW	IPR005202 (Transcription factor GRAS)	
Niben101Scf09535g01001.1	sp|A2SHH9|FTSH_METPP	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR011992 (EF-hand domain pair), IPR015415 (Vps4 oligomerisation, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028596 (Katanin p60 subunit A1)	GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0008017 (microtubule binding), GO:0008568 (microtubule-severing ATPase activity), GO:0051013 (microtubule severing)
Niben101Scf00883g06001.1	sp|O34153|GLPK_ENTCA	***-	Glycerol kinase	IPR018484 (Carbohydrate kinase, FGGY, N-terminal), IPR018485 (Carbohydrate kinase, FGGY, C-terminal)	GO:0005975 (carbohydrate metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00332g06019.1	sp|A0KNY6|ERPA_AERHH	****	Iron-sulfur cluster insertion protein ErpA	IPR000361 (FeS cluster biogenesis), IPR016092 (FeS cluster insertion protein)	GO:0005198 (structural molecule activity), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf08175g00008.1	sp|B4EWN4|MDTK_PROMH	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf08355g04008.1	sp|Q9C778|ELP4_ARATH	*-*-	Elongator complex protein 4		
Niben101Scf03795g00001.1	sp|Q9SHJ5|GPAT1_ARATH	***-	Glycerol-3-phosphate acyltransferase 1		
Niben101Scf04514g02020.1	sp|Q8RWU6|NHX6_ARATH	*-**	Sodium/hydrogen exchanger 6	IPR006153 (Cation/H+ exchanger), IPR018422 (Cation/H+ exchanger, CPA1 family)	GO:0006812 (cation transport), GO:0006814 (sodium ion transport), GO:0006885 (regulation of pH), GO:0015299 (solute:proton antiporter activity), GO:0015385 (sodium:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03326g01016.1	sp|Q0U4Z8|VPS27_PHANO	*-*-	Vacuolar protein sorting-associated protein 27	IPR008942 (ENTH/VHS)	GO:0006886 (intracellular protein transport)
Niben101Scf01948g01005.1	sp|B4MFM2|WDR48_DROVI	*-*-	WD repeat-containing protein 48 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf11235g00003.1	ref|WP_017998225.1|	*-**	GTP-binding protein YsxC [Paracoccus sp. N5]	IPR006073 (GTP binding domain), IPR019987 (GTP-binding protein, ribosome biogenesis, YsxC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000917 (barrier septum assembly), GO:0005525 (GTP binding)
Niben101Scf05584g04009.1	sp|O95864|FADS2_HUMAN	****	Fatty acid desaturase 2	IPR012171 (Fatty acid/sphingolipid desaturase)	GO:0005506 (iron ion binding), GO:0006629 (lipid metabolic process), GO:0006633 (fatty acid biosynthetic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00465g03003.1	sp|P0C8Z7|GDL91_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf04552g02002.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf15995g00009.1	sp|Q9SZH2|PER43_ARATH	****	Peroxidase 43	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06778g04004.1	gb|AGT40487.1|	--*-	herbivore elicitor-regulated 1 [Nicotiana attenuata]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf21110g00005.1	sp|A4WCW6|FADJ_ENT38	****	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0003857 (3-hydroxyacyl-CoA dehydrogenase activity), GO:0006631 (fatty acid metabolic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00709g07009.1	AT5G67370.1	***-	Protein of unknown function (DUF1230) LENGTH=327	IPR009631 (Uncharacterised protein family Ycf36)	
Niben101Scf08160g02011.1			Unknown protein		
Niben101Scf10277g00003.1	emb|CDX77148.1|	-**-	BnaC04g39430D [Brassica napus]		
Niben101Scf06497g00009.1	sp|Q8H0T9|KTNB1_ARATH	*-*-	Katanin p80 WD40 repeat-containing subunit B1 homolog	IPR028021 (Katanin p80 subunit, C-terminal)	
Niben101Scf12718g00001.1			Unknown protein		
Niben101Scf11785g00009.1	ref|WP_006613843.1|	****	sodium:proton antiporter [Bradyrhizobium sp. ORS 285] emb|CCD88502.1| conserved membrane hypothetical protein [Bradyrhizobium sp. ORS 285]	IPR004680 (Citrate transporter-like domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf16448g00006.1	sp|A1JPA1|MDTK_YERE8	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03222g04003.1	AT1G03920.1	****	Protein kinase family protein LENGTH=569	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00964g05014.1	emb|CBR23797.1|	*-*-	Ycf1 protein [Olea europaea subsp. cuspidata]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf00911g03001.1	sp|Q5IH13|SPP2_TOBAC	****	Sucrose-phosphatase 2	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR013679 (Sucrose-6-phosphate phosphohydrolase C-terminal), IPR023214 (HAD-like domain)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0005986 (sucrose biosynthetic process), GO:0008152 (metabolic process), GO:0016791 (phosphatase activity), GO:0050307 (sucrose-phosphate phosphatase activity)
Niben101Scf09360g00018.1			Unknown protein		
Niben101Scf06524g02015.1	sp|O82302|P2C29_ARATH	*-*-	Protein phosphatase 2C 29	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf04609g00031.1	sp|Q9LUD6|PP230_ARATH	--*-	Pentatricopeptide repeat-containing protein At3g14580, mitochondrial		
Niben101Scf01763g02016.1	sp|P34164|SIP2_YEAST	*-*-	SNF1 protein kinase subunit beta-2	IPR014756 (Immunoglobulin E-set), IPR030070 (SNF1-related protein kinase regulatory subunit beta-2)	
Niben101Scf01374g10019.1	sp|A4SKE9|MAO1_AERS4	****	NAD-dependent malic enzyme	IPR001891 (Malic oxidoreductase)	GO:0004470 (malic enzyme activity), GO:0004471 (malate dehydrogenase (decarboxylating) (NAD+) activity), GO:0006108 (malate metabolic process), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02069g00018.1	gb|ACY74744.2|	***-	methanol inducible protein [Nicotiana benthamiana]		
Niben101Scf03039g00004.1	AT3G20260.1	***-	Protein of unknown function (DUF1666) LENGTH=437	IPR008195 (Ribosomal protein L34Ae), IPR012870 (Protein of unknown function DUF1666)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06436g03010.1	AT1G01730.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=224		
Niben101Scf05710g02002.1	sp|A5IA67|KATG2_LEGPC	*-**	Catalase-peroxidase 2	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00401g01017.1	ref|XP_002514414.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF48010.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01922g03014.1	AT3G24040.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=417	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf01797g03037.1	sp|Q8UC47|TSAD_AGRT5	--*-	tRNA N6-adenosine threonylcarbamoyltransferase		
Niben101Scf06078g02029.1	sp|P51153|RAB13_HUMAN	***-	Ras-related protein Rab-13	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf04549g02002.1			Unknown protein		
Niben101Scf06280g01006.1	sp|Q9LFQ3|SNL2_ARATH	***-	Paired amphipathic helix protein Sin3-like 2	IPR003822 (Paired amphipathic helix), IPR013194 (Histone deacetylase interacting)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03671g02001.1	sp|O17917|RN113_CAEEL	--*-	RING finger protein 113 homolog	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04444g09030.1	sp|Q5ZJF4|PRDX6_CHICK	*-*-	Peroxiredoxin-6	IPR012336 (Thioredoxin-like fold)	GO:0016209 (antioxidant activity), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08698g02021.1	sp|Q9CZV8|FXL20_MOUSE	*-*-	F-box/LRR-repeat protein 20	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf06467g01002.1	sp|B5EXM5|APT_SALA4	****	Adenine phosphoribosyltransferase	IPR005764 (Adenine phosphoribosyl transferase), IPR029057 (Phosphoribosyltransferase-like)	GO:0003999 (adenine phosphoribosyltransferase activity), GO:0005737 (cytoplasm), GO:0006168 (adenine salvage), GO:0009116 (nucleoside metabolic process)
Niben101Scf04526g01008.1	AT5G06750.1	****	Protein phosphatase 2C family protein LENGTH=393	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf03918g00013.1	sp|Q9FIX3|PP407_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03307g08016.1			Unknown protein		
Niben101Scf12076g00017.1	emb|CDY14003.1|	*-*-	BnaC09g38230D [Brassica napus]	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf00905g16001.1	gb|KEH17312.1|	****	O-acyltransferase (WSD1-like) family protein [Medicago truncatula]	IPR004255 (O-acyltransferase, WSD1, N-terminal), IPR009721 (O-acyltransferase, WSD1, C-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity), GO:0045017 (glycerolipid biosynthetic process)
Niben101Ctg13555g00001.1	sp|Q6NMR8|FAF3_ARATH	*-*-	Protein FANTASTIC FOUR 3	IPR021410 (The fantastic four family)	
Niben101Scf20283g01009.1	AT2G26900.1	*-*-	Sodium Bile acid symporter family LENGTH=409	IPR002657 (Bile acid:sodium symporter/arsenical resistance protein  Acr3), IPR010399 (Tify), IPR018467 (CO/COL/TOC1, conserved site)	GO:0016020 (membrane)
Niben101Scf13601g00022.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00312g02004.1			Unknown protein	IPR003656 (Zinc finger, BED-type)	GO:0003677 (DNA binding)
Niben101Scf01210g00010.1	sp|B4SBU2|RS12_PELPB	*-**	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf03927g03006.1	sp|A7NY33|PER4_VITVI	****	Peroxidase 4	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04103g03013.1	ref|XP_007013337.1|	***-	SH3 and FCH domain-containing protein DDB_G0271676, partial [Theobroma cacao] gb|EOY30956.1| SH3 and FCH domain-containing protein DDB_G0271676, partial [Theobroma cacao]		
Niben101Scf03455g00006.1	sp|P44933|KEFX_HAEIN	--*-	Glutathione-regulated potassium-efflux system protein	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01374g07001.1	sp|Q8LC03|ATB13_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-13	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR013978 (MEKHLA), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf04569g02002.1	sp|Q13DP4|ATPA_RHOPS	*-*-	ATP synthase subunit alpha	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00663g02003.1	emb|CDY48585.1|	--*-	BnaCnng16440D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf09119g01011.1	sp|Q9S9T7|VP282_ARATH	***-	Vacuolar protein sorting-associated protein 28 homolog 2	IPR007143 (Vacuolar protein sorting-associated, VPS28)	
Niben101Scf14144g00015.1			Unknown protein		
Niben101Scf02474g01025.1			Unknown protein		
Niben101Scf02664g01007.1	sp|Q8VXV4|DNJ16_ARATH	*-*-	Chaperone protein dnaJ 16	IPR001623 (DnaJ domain), IPR022226 (Protein of unknown function DUF3752)	
Niben101Scf36674g00005.1	sp|Q9JHW9|AL1A3_MOUSE	****	Aldehyde dehydrogenase family 1 member A3	IPR015657 (Aminobutyraldehyde dehydrogenase), IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00854g09088.1	gb|AFI44261.1|	***-	cytochrome c biogenesis FC (mitochondrion) [Silene vulgaris]		
Niben101Scf16806g00011.1	sp|O23044|PER3_ARATH	****	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00652g01007.1	sp|P32518|DUT_SOLLC	***-	Deoxyuridine 5'-triphosphate nucleotidohydrolase	IPR008180 (Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase), IPR029054 (dUTPase-like)	GO:0016787 (hydrolase activity), GO:0046080 (dUTP metabolic process)
Niben101Scf12063g01003.1	emb|CDY10434.1|	***-	BnaCnng03350D [Brassica napus]		
Niben101Scf05028g00020.1	sp|P0C8Q3|PP326_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02112g02010.1	AT4G24400.1	****	CBL-interacting protein kinase 8 LENGTH=445	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08711g00019.1	gb|AFX66992.1|	--*-	anaerobic basic leucine zipper protein [Solanum tuberosum]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf10384g00017.1	sp|O82012|HSP12_SOLPE	***-	17.6 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf01526g04018.1			Unknown protein		
Niben101Scf09217g00024.1	sp|P31237|ACCO_ACTDE	***-	1-aminocyclopropane-1-carboxylate oxidase	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf23825g00004.1	sp|Q9LS46|ALMT9_ARATH	****	Aluminum-activated malate transporter 9	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf05203g05009.1	sp|Q9M3G7|ATM_ARATH	*-*-	Serine/threonine-protein kinase ATM		
Niben101Scf06441g01026.1	sp|O82632|GATA9_ARATH	****	GATA transcription factor 9	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04126g00003.1	ref|XP_007043896.1|	***-	Catalytics,hydrolases isoform 1 [Theobroma cacao] gb|EOX99727.1| Catalytics,hydrolases isoform 1 [Theobroma cacao]		
Niben101Scf01692g05002.1			Unknown protein		
Niben101Scf34002g00002.1	sp|A2C6X1|ATPL_PROM3	****	ATP synthase subunit c	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf03439g02024.1			Unknown protein		
Niben101Scf00408g04003.1			Unknown protein		
Niben101Scf08500g01001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07383g01005.1			Unknown protein		
Niben101Scf02940g00006.1	ref|XP_002511479.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52081.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07788g04001.1			Unknown protein	IPR012336 (Thioredoxin-like fold)	
Niben101Scf18696g00008.1	emb|CDY00123.1|	***-	BnaC09g01780D [Brassica napus]	IPR007679 (Protein of unknown function DUF569), IPR008999 (Actin cross-linking)	
Niben101Scf03100g01004.1			Unknown protein		
Niben101Scf00725g06004.1	sp|Q9SXS8|ERF3_TOBAC	*-**	Ethylene-responsive transcription factor 3	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03647g01003.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01626g04012.1	sp|B0CE31|DAPB_ACAM1	****	4-hydroxy-tetrahydrodipicolinate reductase	IPR011770 (Dihydrodipicolinate reductase, bacterial/plant)	GO:0008839 (4-hydroxy-tetrahydrodipicolinate reductase), GO:0009089 (lysine biosynthetic process via diaminopimelate), GO:0009507 (chloroplast), GO:0055114 (oxidation-reduction process), GO:0070402 (NADPH binding)
Niben101Scf00819g06008.1	sp|Q9M5P8|SNAA_SOLTU	***-	Alpha-soluble NSF attachment protein	IPR000744 (NSF attachment protein)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport)
Niben101Scf02929g06007.1			Unknown protein		
Niben101Scf06091g08011.1	sp|Q9LVZ8|LOR12_ARATH	***-	Protein LURP-one-related 12	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf01589g00002.1	sp|Q8BYW9|EOGT_MOUSE	*-**	EGF domain-specific O-linked N-acetylglucosamine transferase	IPR007657 (Glycosyltransferase AER61, uncharacterised)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf01343g00021.1	sp|B9DHT4|ARIA_ARATH	--*-	ARM REPEAT PROTEIN INTERACTING WITH ABF2		
Niben101Scf08618g01012.1	sp|P29520|EF1A_BOMMO	****	Elongation factor 1-alpha	IPR004539 (Translation elongation factor EF1A, eukaryotic/archaeal), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005737 (cytoplasm), GO:0006414 (translational elongation)
Niben101Scf05115g01002.1	sp|Q6YYC0|C3H55_ORYSJ	--*-	Zinc finger CCCH domain-containing protein 55	IPR000571 (Zinc finger, CCCH-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf01061g04017.1	ref|WP_032541751.1|	*-**	DNA primase [Bacteroides fragilis]	IPR006171 (Toprim domain), IPR027032 (Twinkle-like protein)	GO:0003697 (single-stranded DNA binding), GO:0043139 (5'-3' DNA helicase activity)
Niben101Scf00704g04009.1	sp|O15488|GLYG2_HUMAN	*-*-	Glycogenin-2	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf05487g01017.1	sp|O23487|BH003_ARATH	***-	Transcription factor bHLH3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf09455g01001.1			Unknown protein	IPR029071 (Ubiquitin-related domain)	
Niben101Scf05484g02011.1	sp|Q09357|MET16_CAEEL	--**	Methyltransferase-like protein 16 homolog	IPR004556 (Modification methylase HemK), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003676 (nucleic acid binding), GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity), GO:0008276 (protein methyltransferase activity), GO:0032259 (methylation)
Niben101Scf00581g02002.1	ref|NP_001057838.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf03949g07013.1	sp|P21335|TADA_BACSU	*-*-	tRNA-specific adenosine deaminase	IPR016193 (Cytidine deaminase-like)	GO:0003824 (catalytic activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity)
Niben101Scf00712g06004.1	sp|O42993|FKBP_SCHPO	--*-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf06005g00020.1	gb|AES64334.2|	***-	F-box protein interaction domain protein [Medicago truncatula]	IPR017451 (F-box associated interaction domain)	
Niben101Scf00811g05002.1	sp|Q9C7U5|E132_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 2	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05047g03008.1	sp|Q6ME07|DNAJ_PARUW	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR026894 (DNAJ-containing protein, X-domain)	
Niben101Scf04197g00004.1	sp|Q6DFF2|BRD4B_XENLA	*-*-	Bromodomain-containing protein 4B	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf00372g03022.1	ref|WP_032853289.1|	*-**	glycosyl hydrolase family 43 [Bacteroides sp. D2]	IPR006710 (Glycoside hydrolase, family 43), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03736g02005.1	sp|Q8L751|ORP1C_ARATH	***-	Oxysterol-binding protein-related protein 1C	IPR000648 (Oxysterol-binding protein), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf04489g00008.1	AT1G15440.1	***-	periodic tryptophan protein 2 LENGTH=900	IPR007148 (Small-subunit processome, Utp12), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR027145 (Periodic tryptophan protein 2)	GO:0005515 (protein binding)
Niben101Scf03939g06024.1	sp|Q8RXN3|PPT1_ARATH	***-	Phosphoenolpyruvate/phosphate translocator 1, chloroplastic	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf00211g00045.1	sp|Q3SWX0|NIPA2_BOVIN	--**	Magnesium transporter NIPA2	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf26120g00005.1	sp|Q9T048|DRL27_ARATH	***-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf06565g03013.1	sp|Q25378|KPC1_LYTPI	*-**	Protein kinase C	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05713g01004.1			Unknown protein		
Niben101Scf00620g02008.1	sp|Q9LNT9|ASK4_ARATH	***-	SKP1-like protein 4	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf04209g00002.1			Unknown protein		
Niben101Scf02073g01009.1	sp|Q9SXS8|ERF3_TOBAC	****	Ethylene-responsive transcription factor 3	IPR001471 (AP2/ERF domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05773g00002.1	sp|O80340|ERF78_ARATH	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06211g01009.1	AT1G20610.1	****	Cyclin B2;3 LENGTH=429	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf00278g05001.1	sp|Q40478|ERF5_TOBAC	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04939g02012.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Ctg04206g00001.1	ref|XP_007049116.1|	--*-	Condensin complex subunit 2, putative isoform 6 [Theobroma cacao] gb|EOX93273.1| Condensin complex subunit 2, putative isoform 6 [Theobroma cacao]		
Niben101Scf00430g01016.1	sp|O19911|SECA_CYACA	***-	Protein translocase subunit SecA	IPR000185 (Protein translocase subunit SecA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006605 (protein targeting), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0017038 (protein import)
Niben101Scf06042g05001.1			Unknown protein	IPR010666 (Zinc finger, GRF-type)	
Niben101Scf11472g00009.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf01292g03003.1	sp|B2J058|ATPA_NOSP7	*-*-	ATP synthase subunit alpha	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03985g02006.1	AT3G55570.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=109		
Niben101Scf02439g00026.1	gb|KEH27793.1|	***-	homeobox transcription factor [Medicago truncatula]	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07231g07005.1	ref|WP_016948830.1|	***-	carotene isomerase [Anabaena sp. PCC 7108]		
Niben101Scf05363g03007.1	sp|Q0WP01|PTR9_ARATH	*-*-	Protein NRT1/ PTR FAMILY 5.10	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02074g04012.1	sp|B3EP58|RL2_CHLPB	*-*-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02551g00003.1	sp|Q9LNU6|PPR53_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf12422g00005.1	sp|P39098|MA1A2_MOUSE	****	Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB	IPR001382 (Glycoside hydrolase, family 47)	GO:0004571 (mannosyl-oligosaccharide 1,2-alpha-mannosidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane)
Niben101Scf04632g04004.1	ref|WP_025590094.1|	***-	histidine kinase [Vibrio parahaemolyticus]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02243g07001.1	sp|Q561R7|TF2H3_RAT	--**	General transcription factor IIH subunit 3	IPR004600 (TFIIH subunit Tfb4/p34)	GO:0000439 (core TFIIH complex), GO:0006289 (nucleotide-excision repair), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00016g01009.1	gb|KEH31187.1|	--*-	F-box/RNI superfamily protein [Medicago truncatula]		
Niben101Scf02919g04006.1	gb|AFW04224.1|	****	phosphoethanolamine N-methyl transferase [Suaeda maritima]	IPR025771 (Phosphoethanolamine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0000234 (phosphoethanolamine N-methyltransferase activity), GO:0006656 (phosphatidylcholine biosynthetic process), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf03462g03009.1	sp|Q7Z7K6|CENPV_HUMAN	*-*-	Centromere protein V	IPR011057 (Mss4-like)	GO:0008152 (metabolic process), GO:0016846 (carbon-sulfur lyase activity)
Niben101Scf01734g01022.1	AT2G43280.1	*-*-	Far-red impaired responsive (FAR1) family protein LENGTH=206	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf13699g00002.1			Unknown protein		
Niben101Scf04714g00001.1	ref|XP_002511663.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF50332.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00180g01012.1	AT4G21620.1	*-*-	glycine-rich protein LENGTH=131		
Niben101Scf04496g00016.1	sp|Q9ZNU2|NAC18_ARATH	*-*-	NAC domain-containing protein 18	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07591g01029.1	sp|Q10119|EF1A2_SCHPO	***-	Elongation factor 1-alpha-B/C	IPR000795 (Elongation factor, GTP-binding domain), IPR001876 (Zinc finger, RanBP2-type), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0008270 (zinc ion binding)
Niben101Scf04418g08005.1	sp|Q9LT79|PUB25_ARATH	***-	U-box domain-containing protein 25	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf03481g01031.1	sp|Q5ZL00|EMC1_CHICK	****	ER membrane protein complex subunit 1	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR011678 (Domain of unknown function DUF1620), IPR026895 (ER membrane protein complex subunit 1)	GO:0072546 (ER membrane protein complex)
Niben101Scf05808g00003.1	AT4G03410.2	****	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein LENGTH=361	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf01380g03003.1	sp|Q87TC2|BIOH_VIBPA	*-*-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04639g03005.1	sp|B4U7U4|FTSH_HYDS0	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR009010 (Aspartate decarboxylase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029067 (CDC48 domain 2-like)	GO:0005524 (ATP binding)
Niben101Scf04403g00004.1	AT3G26560.1	****	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001650 (Helicase, C-terminal), IPR002464 (DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf01429g00009.1	gb|AAU89199.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf07645g04006.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01017g02001.1	emb|CDY43683.1|	--*-	BnaA04g20080D [Brassica napus]		
Niben101Scf18061g00012.1	ref|XP_002510332.1|	****	zinc ion binding protein, putative [Ricinus communis] gb|EEF52519.1| zinc ion binding protein, putative [Ricinus communis]	IPR001781 (Zinc finger, LIM-type), IPR003903 (Ubiquitin interacting motif), IPR022087 (Protein DA1 like)	GO:0008270 (zinc ion binding)
Niben101Scf09189g01004.1	gb|AAK13103.1|AC078839_19	*-*-	Helicase-like protein [Oryza sativa Japonica Group]		
Niben101Scf12690g01009.1	sp|O59952|LIP_THELA	*-*-	Lipase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf01353g02010.1	gb|KGZ10670.1|	***-	gluconolaconase [Serratia marcescens]	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf00883g06006.1	sp|Q9FMU5|UTP18_ARATH	***-	U3 small nucleolar RNA-associated protein 18 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05405g07003.1	AT5G39390.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=502	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Scf02917g00005.1	sp|Q54ZP5|WDR48_DICDI	--*-	WD repeat-containing protein 48 homolog	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf09577g00013.1	AT3G48140.1	***-	B12D protein LENGTH=88	IPR010530 (NADH-ubiquinone reductase complex 1 MLRQ subunit)	
Niben101Scf01338g04003.1	AT5G38630.1	***-	cytochrome B561-1 LENGTH=230	IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf00925g02012.1	gb|KEH39792.1|	***-	DUF1997 family protein [Medicago truncatula]	IPR018971 (Protein of unknown function DUF1997)	
Niben101Scf03412g05010.1	sp|Q9LN01|PPR21_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR029033 (Histidine phosphatase superfamily)	GO:0003993 (acid phosphatase activity)
Niben101Scf13332g00015.1	sp|Q4VNZ8|DEF59_ARATH	--*-	Defensin-like protein 59		
Niben101Scf12498g00006.1	sp|Q9ZUA9|Y2181_ARATH	***-	PHD finger protein	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03679g00002.1	AT3G10870.1	***-	methyl esterase 17 LENGTH=276	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03376g00009.1	sp|Q9FKP5|UBP17_ARATH	*-**	Ubiquitin carboxyl-terminal hydrolase 17	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf01028g02002.1	sp|P45482|FTSZ_NOSS1	***-	Cell division protein FtsZ	IPR003008 (Tubulin/FtsZ, GTPase domain)	
Niben101Scf00482g03012.1	sp|O48538|RBOHF_ARATH	****	Respiratory burst oxidase homolog protein F	IPR000778 (Cytochrome b245, heavy chain), IPR011992 (EF-hand domain pair), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0004601 (peroxidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0050664 (oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf03431g00016.1	sp|Q9VI82|NOC3L_DROME	--*-	Nucleolar complex protein 3 homolog		
Niben101Scf03643g02010.1			Unknown protein		
Niben101Scf08242g00001.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03676g04011.1	sp|B0JYZ2|PEX16_XENTR	***-	Peroxisomal membrane protein PEX16	IPR013919 (Peroxisome membrane protein, Pex16)	
Niben101Scf05881g02022.1	gb|AAB87670.1|	***-	adenyl cyclase [Nicotiana tabacum]		
Niben101Scf07424g02020.1	sp|E1BB50|CDK12_BOVIN	*-**	Cyclin-dependent kinase 12	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06770g00025.1	sp|P10582|DPOM_MAIZE	*-**	DNA polymerase	IPR004868 (DNA-directed DNA polymerase, family B, mitochondria/virus), IPR012337 (Ribonuclease H-like domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf01832g01015.1			Unknown protein	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf04207g01027.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05827g02002.1	sp|Q82EL5|ACSA_STRAW	***-	Acetyl-coenzyme A synthetase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf06829g03011.1	sp|B7J5Q1|PYRD_ACIF2	****	Dihydroorotate dehydrogenase (quinone)	IPR012135 (Dihydroorotate dehydrogenase, class 1/ 2), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004152 (dihydroorotate dehydrogenase activity), GO:0006207 ('de novo' pyrimidine nucleobase biosynthetic process), GO:0006222 (UMP biosynthetic process), GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf10846g00005.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR011009 (Protein kinase-like domain), IPR013227 (PAN-2 domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf19930g01004.1	sp|Q9SXD8|PPR90_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01520g01002.1	AT1G03220.1	***-	Eukaryotic aspartyl protease family protein LENGTH=433	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01623g10003.1	emb|CDY15257.1|	***-	BnaC05g01360D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf01478g02010.1	sp|Q9CAJ9|Y1385_ARATH	*-*-	BTB/POZ domain-containing protein		
Niben101Scf08817g01014.1	sp|A1L243|MESD_DANRE	-**-	LDLR chaperone MESD	IPR019330 (Mesoderm development candidate 2)	
Niben101Scf01063g03007.1	sp|Q14498|RBM39_HUMAN	--**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03839g12004.1	sp|Q9LRW1|LBD22_ARATH	*-*-	LOB domain-containing protein 22	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf00679g04001.1	sp|O23044|PER3_ARATH	****	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02842g01012.1			Unknown protein		
Niben101Scf00854g06057.1	ref|XP_002521496.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF40885.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00394g00011.1	AT1G17620.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=264	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf05904g00005.1	sp|P93654|SYP22_ARATH	***-	Syntaxin-22	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf04216g07014.1	sp|Q5ZIL6|TM41B_CHICK	***-	Transmembrane protein 41B		
Niben101Scf01462g02023.1	emb|CDY05777.1|	*-*-	BnaC07g00260D [Brassica napus]		
Niben101Scf04236g00012.1	sp|P81898|PNAA_PRUDU	*-*-	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A		
Niben101Scf05776g01044.1	sp|Q6ANM8|NUOH_DESPS	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf06310g02005.1	sp|Q9SSC7|LOR5_ARATH	***-	Protein LURP-one-related 5	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf07441g03012.1	sp|Q8LB81|GDL79_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02400g00006.1	AT3G60320.1	*-*-	Protein of unknown function (DUF630 and DUF632) LENGTH=796	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf01451g02003.1	sp|Q9SJ56|BLH1_ARATH	***-	BEL1-like homeodomain protein 1	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06653g02022.1	sp|Q8TF32|ZN431_HUMAN	--*-	Zinc finger protein 431	IPR002893 (Zinc finger, MYND-type)	
Niben101Scf04329g05020.1	sp|O43347|MSI1H_HUMAN	*-**	RNA-binding protein Musashi homolog 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02627g01025.1	ref|XP_007020797.1|	***-	Actin cyt end3, putative isoform 1 [Theobroma cacao]	IPR007608 (Senescence regulator S40)	
Niben101Scf19995g01001.1	sp|Q9FGY1|BXL1_ARATH	***-	Beta-D-xylosidase 1	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026891 (Fibronectin type III-like domain), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Ctg07719g00001.1	gb|ABF00984.1|	*-*-	disease resistance protein RPP13 variant [Arabidopsis thaliana]		
Niben101Scf05381g03013.1			Unknown protein		
Niben101Scf07491g00014.1	AT1G20550.1	***-	O-fucosyltransferase family protein LENGTH=564	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf02111g16020.1	AT3G06630.1	***-	protein kinase family protein LENGTH=671	IPR000014 (PAS domain)	GO:0004871 (signal transducer activity), GO:0007165 (signal transduction)
Niben101Scf01171g06008.1	sp|Q9LJR7|XTH3_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 3	IPR010713 (Xyloglucan endo-transglycosylase, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf13137g00011.1	sp|Q9LVP1|TOP3A_ARATH	*-*-	DNA topoisomerase 3-alpha	IPR001878 (Zinc finger, CCHC-type), IPR010666 (Zinc finger, GRF-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf03548g01008.1	gb|KEH40638.1|	*-*-	Sec14p-like phosphatidylinositol transfer family protein [Medicago truncatula]	IPR001251 (CRAL-TRIO domain)	
Niben101Scf10763g00010.1	sp|Q39110|GAOX1_ARATH	***-	Gibberellin 20 oxidase 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf11779g01001.1	sp|Q54S79|WDR3_DICDI	*-*-	WD repeat-containing protein 3 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Ctg12954g00001.1	sp|Q4UK16|ATPA_RICFE	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00646g07011.1	emb|CDW84369.1|	--*-	neurohypophysial n-terminal domain containing protein [Stylonychia lemnae]		
Niben101Scf00270g14008.1	sp|P40690|ALKE_BABBO	--*-	Aldo-keto reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf02359g00024.1	ref|NP_001041892.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf00980g07019.1	sp|Q55276|LCYB_SYNE7	*-*-	Lycopene beta cyclase	IPR008671 (Lycopene cyclase-type, FAD-binding)	GO:0016117 (carotenoid biosynthetic process), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen)
Niben101Scf05014g00019.1	sp|Q94758|DYL1_SCHMA	*-*-	Dynein light chain	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Scf03772g02002.1	AT5G47435.2	****	formyltetrahydrofolate deformylase, putative LENGTH=323	IPR004810 (Formyltetrahydrofolate deformylase)	GO:0006189 ('de novo' IMP biosynthetic process), GO:0008152 (metabolic process), GO:0008864 (formyltetrahydrofolate deformylase activity), GO:0009058 (biosynthetic process), GO:0016597 (amino acid binding), GO:0016742 (hydroxymethyl-, formyl- and related transferase activity)
Niben101Scf00887g04008.1	AT2G25720.1	***-	unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=117	IPR013865 (Protein of unknown function DUF1754, eukaryotic)	
Niben101Scf01750g07003.1	sp|Q9BTT6|LRRC1_HUMAN	*-*-	Leucine-rich repeat-containing protein 1	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	
Niben101Scf00422g01009.1	sp|Q6GP81|TM258_XENLA	-**-	Transmembrane protein 258	IPR007915 (Uncharacterised protein family UPF0197)	
Niben101Scf03941g03002.1	AT3G11590.1	***-	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=622		
Niben101Scf02119g00015.1	ref|XP_007023562.1|	*-*-	Mitochondrial import inner membrane translocase subunit tim-10 isoform 1 [Theobroma cacao] gb|EOY26184.1| Mitochondrial import inner membrane translocase subunit tim-10 isoform 1 [Theobroma cacao]		
Niben101Scf02864g11006.1	gb|KEH40242.1|	*-*-	ACT-like tyrosine kinase family protein [Medicago truncatula]		
Niben101Scf00571g05011.1	sp|Q9LHI0|NDUA6_ARATH	***-	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6		
Niben101Scf35900g00003.1	sp|P81947|TBA1B_BOVIN	*-*-	Tubulin alpha-1B chain	IPR000217 (Tubulin)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf02111g16021.1	AT3G06630.1	*-**	protein kinase family protein LENGTH=671	IPR000014 (PAS domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004871 (signal transducer activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02910g01036.1	AT5G52290.1	***-	shortage in chiasmata 1 LENGTH=1594		
Niben101Scf00095g08002.1	sp|Q9FZ70|FDL1_ARATH	*-*-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05776g01043.1	sp|P0AFE2|NUOJ_ECO57	--**	NADH-quinone oxidoreductase subunit J	IPR001457 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 6)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04177g04004.1	sp|Q9VTG7|B3G2P_DROME	*-**	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P	IPR005027 (Glycosyl transferase, family 43), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0015018 (galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity), GO:0016020 (membrane)
Niben101Scf06423g01015.1	dbj|BAO76696.1|	***-	alkylated DNA repair protein [Winogradskyella sp. PG-2]	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf09924g01002.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08625g00008.1	AT4G16580.1	***-	Protein phosphatase 2C family protein LENGTH=467	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf07541g00015.1	sp|A1EA25|PSBE_AGRST	***-	Cytochrome b559 subunit alpha	IPR006217 (Photosystem II cytochrome b559, alpha subunit), IPR006241 (Photosystem II cytochrome b559, beta subunit)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf08470g06001.1	sp|P19532|TFE3_HUMAN	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01061g01028.1	sp|Q84MA5|CAAT1_ARATH	****	Cationic amino acid transporter 1	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf00984g10001.1	AT1G03050.1	*-*-	ENTH/ANTH/VHS superfamily protein LENGTH=599	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf00121g00028.1	sp|Q32PH8|EF1A2_BOVIN	*-*-	Elongation factor 1-alpha 2	IPR000795 (Elongation factor, GTP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf00854g01019.1	gb|AGY62799.1|	*-*-	orf148 (mitochondrion) [Eruca vesicaria subsp. sativa] gb|AHY20342.1| hypothetical protein (mitochondrion) (mitochondrion) [Brassica juncea var. tumida] gb|AIC83308.1| orf148 (mitochondrion) [Brassica oleracea var. botrytis]		
Niben101Scf03817g03030.1	sp|Q39256|UBQ8_ARATH	--*-	Polyubiquitin 8	IPR029071 (Ubiquitin-related domain)	
Niben101Scf02662g00022.1	AT5G19760.1	***-	Mitochondrial substrate carrier family protein LENGTH=298	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf03371g01009.1	sp|Q6P4L9|NFRKB_XENTR	*-*-	Nuclear factor related to kappa-B-binding protein	IPR024867 (Nuclear factor related to kappa-B-binding protein)	GO:0031011 (Ino80 complex)
Niben101Scf03952g06014.1	sp|Q9LSF7|Y3518_ARATH	--*-	B3 domain-containing protein	IPR015300 (DNA-binding pseudobarrel domain)	
Niben101Scf05270g02007.1	sp|Q9FZ95|PUP3_ARATH	***-	Purine permease 3	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf01258g03006.1			Unknown protein		
Niben101Scf00082g00008.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08836g00020.1	sp|A8MBU4|NPD_CALMQ	*-**	NAD-dependent protein deacetylase	IPR003000 (Sirtuin family), IPR029035 (DHS-like NAD/FAD-binding domain)	GO:0070403 (NAD+ binding)
Niben101Scf06671g02015.1	emb|CDY38196.1|	***-	BnaA09g11930D [Brassica napus]		
Niben101Scf00367g01001.1	sp|Q8AXV6|HEY1_DANRE	--*-	Hairy/enhancer-of-split related with YRPW motif protein 1		
Niben101Scf05407g01005.1	sp|Q8W4C3|PARNL_ARATH	***-	Poly(A)-specific ribonuclease PARN-like	IPR006941 (Ribonuclease CAF1), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Scf01063g03008.1	AT5G16810.1	*-*-	Protein kinase superfamily protein LENGTH=418		
Niben101Scf15286g00012.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00108g06007.1	AT1G49040.1	*-*-	stomatal cytokinesis defective / SCD1 protein (SCD1) LENGTH=1187	IPR001194 (DENN domain), IPR005113 (uDENN domain)	
Niben101Scf00526g00004.1	AT2G35360.1	***-	ubiquitin family protein LENGTH=225	IPR019387 (Uncharacterised domain SAYSvFN), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf02168g05002.1			Unknown protein		
Niben101Scf11663g00006.1	sp|Q9LJB7|BBX32_ARATH	*-**	B-box zinc finger protein 32	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf01652g00005.1	sp|Q9FKB5|KRP3_ARATH	****	Cyclin-dependent kinase inhibitor 3	IPR003175 (Cyclin-dependent kinase inhibitor)	GO:0004861 (cyclin-dependent protein serine/threonine kinase inhibitor activity), GO:0005634 (nucleus), GO:0007050 (cell cycle arrest)
Niben101Scf14636g02001.1	AT2G01080.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=231	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf17802g02009.1	emb|CDX80581.1|	***-	BnaC07g28630D [Brassica napus]		
Niben101Scf02807g10001.1	sp|Q9LVQ0|PME31_ARATH	****	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf00887g03010.1	dbj|BAO49729.1|	***-	nuclear pore complex protein NDC1b [Nicotiana benthamiana]	IPR019049 (Nucleoporin protein Ndc1-Nup)	
Niben101Scf04626g00011.1	AT3G28050.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=367	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf03676g04010.1	sp|B3H7G2|URM12_ARATH	***-	Ubiquitin-related modifier 1 homolog 2	IPR012675 (Beta-grasp domain), IPR015221 (Ubiquitin-related modifier 1)	GO:0005737 (cytoplasm), GO:0034227 (tRNA thio-modification)
Niben101Scf03445g04015.1	AT5G50150.1	***-	Protein of Unknown Function (DUF239) LENGTH=420	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf02145g07001.1	sp|Q5M1L6|SYL_STRT1	****	Leucine--tRNA ligase	IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding), IPR015413 (Methionyl/Leucyl tRNA synthetase)	GO:0000166 (nucleotide binding), GO:0002161 (aminoacyl-tRNA editing activity), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004823 (leucine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006429 (leucyl-tRNA aminoacylation)
Niben101Scf00625g01006.1	AT2G37740.1	*-*-	zinc-finger protein 10 LENGTH=304	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf03755g04003.1	sp|P27061|PPA1_SOLLC	****	Acid phosphatase 1	IPR005519 (Acid phosphatase (Class B)), IPR023214 (HAD-like domain)	GO:0003993 (acid phosphatase activity)
Niben101Scf07882g00021.1	AT5G13490.1	***-	ADP/ATP carrier 2 LENGTH=385	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf00565g00012.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf00953g00004.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03526g01023.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06473g00014.1	gb|KEH22373.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00460g00002.1	ref|XP_002532545.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29839.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09649g00002.1			Unknown protein		
Niben101Scf02043g05004.1			Unknown protein		
Niben101Scf01548g00016.1			Unknown protein		
Niben101Scf06954g03024.1	AT1G04910.1	***-	O-fucosyltransferase family protein LENGTH=519	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf08030g04001.1	sp|Q9BTZ2|DHRS4_HUMAN	****	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02601g04011.1	sp|Q9UMS4|PRP19_HUMAN	***-	Pre-mRNA-processing factor 19	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013915 (Pre-mRNA-splicing factor 19), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf08876g00030.1	sp|Q18CT8|GUAA_PEPD6	--*-	GMP synthase [glutamine-hydrolyzing]	IPR029062 (Class I glutamine amidotransferase-like)	
Niben101Scf04198g04005.1	sp|P77966|GYRB_SYNY3	*-**	DNA gyrase subunit B	IPR001241 (DNA topoisomerase, type IIA)	GO:0003677 (DNA binding), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0006265 (DNA topological change)
Niben101Scf00490g01044.1	sp|Q9XJ60|MAD50_ORYSJ	****	MADS-box transcription factor 50	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf04455g00014.1	sp|Q75QI0|CFDP1_CHICK	*-*-	Craniofacial development protein 1	IPR011421 (BCNT-C domain), IPR027124 (SWR1-complex protein 5/Craniofacial development protein)	
Niben101Scf01735g02010.1	AT2G44020.1	****	Mitochondrial transcription termination factor family protein LENGTH=507	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02316g03047.1	AT3G08620.1	****	RNA-binding KH domain-containing protein LENGTH=283	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf02426g01008.1	sp|Q5W7F2|AGD3_ARATH	*-*-	ADP-ribosylation factor GTPase-activating protein AGD3	IPR027267 (Arfaptin homology (AH) domain/BAR domain)	GO:0005515 (protein binding), GO:0005737 (cytoplasm)
Niben101Scf13423g00001.1	AT3G03210.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 59 Blast hits to 59 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). LENGTH=368	IPR026057 (PC-Esterase)	
Niben101Scf01316g01005.1	gb|AGQ45638.1|	*-*-	lycopene isomerase [Solanum pennellii]		
Niben101Scf06872g00006.1	sp|Q42525|HXK1_ARATH	***-	Hexokinase-1	IPR001312 (Hexokinase)	GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf08368g03005.1	AT1G24620.1	****	EF hand calcium-binding protein family LENGTH=186	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01006g07002.1	sp|Q9DD03|RAB13_MOUSE	***-	Ras-related protein Rab-13	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf05348g01019.1	AT4G22860.1	*-**	Cell cycle regulated microtubule associated protein LENGTH=509	IPR009675 (TPX2), IPR027330 (TPX2 central domain)	GO:0005819 (spindle), GO:0005874 (microtubule), GO:0007067 (mitotic nuclear division)
Niben101Scf08478g06018.1			Unknown protein		
Niben101Scf02379g02007.1	sp|Q5UPJ7|SYY_MIMIV	****	Tyrosine--tRNA ligase	IPR002305 (Aminoacyl-tRNA synthetase, class Ic)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004831 (tyrosine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation)
Niben101Scf05552g10004.1	AT4G25440.1	***-	zinc finger WD40 repeat protein 1 LENGTH=430	IPR000571 (Zinc finger, CCCH-type), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf00055g03017.1	ref|NP_001275187.1|	--*-	SRE1A protein [Solanum tuberosum] gb|AAB93771.1| SRE1a [Solanum tuberosum]		
Niben101Scf07325g00023.1	ref|XP_003620005.1|	-***	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf12757g00009.1	AT1G19100.1	***-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=663	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf03275g00016.1	sp|P28268|TBA_EUPVA	***-	Tubulin alpha chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf03326g01019.1			Unknown protein		
Niben101Scf04633g02005.1	sp|B4U736|RL7_HYDS0	***-	50S ribosomal protein L7/L12	IPR000206 (Ribosomal protein L7/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01578g04001.1	AT5G04170.1	*-**	Calcium-binding EF-hand family protein LENGTH=354	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00010g03002.1	gb|KEH27032.1|	***-	DUF1666 family protein [Medicago truncatula]	IPR008195 (Ribosomal protein L34Ae), IPR012870 (Protein of unknown function DUF1666)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01150g03001.1	sp|P51950|MAT1_MARGL	*-*-	CDK-activating kinase assembly factor MAT1	IPR004575 (Cdk-activating kinase assembly factor MAT1/Tfb3)	GO:0005634 (nucleus), GO:0007049 (cell cycle)
Niben101Scf06602g00001.1	sp|O23044|PER3_ARATH	****	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05824g09016.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07004g02018.1			Unknown protein		
Niben101Scf01102g03003.1	ref|XP_002513040.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF49543.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07681g02006.1	AT2G27090.1	***-	Protein of unknown function (DUF630 and DUF632) LENGTH=743	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf10747g00017.1	sp|P40972|PLY_TOBAC	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf01434g03006.1	sp|Q41238|LOX16_SOLTU	***-	Linoleate 9S-lipoxygenase 6	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02093g04010.1	sp|Q56XR7|STR4A_ARATH	***-	Rhodanese-like domain-containing protein 4A, chloroplastic	IPR001763 (Rhodanese-like domain)	
Niben101Scf05166g05002.1	sp|Q141D3|ASTD_BURXL	*-*-	N-succinylglutamate 5-semialdehyde dehydrogenase	IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00206g00014.1	ref|XP_003627163.1|	--*-	F-box/FBD/LRR-repeat protein [Medicago truncatula]		
Niben101Scf09640g00009.1	sp|P49972|SR542_SOLLC	****	Signal recognition particle 54 kDa protein 2	IPR000897 (Signal recognition particle, SRP54 subunit, GTPase domain), IPR004125 (Signal recognition particle, SRP54 subunit, M-domain), IPR013822 (Signal recognition particle, SRP54 subunit, helical bundle), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0048500 (signal recognition particle)
Niben101Scf08390g05008.1	sp|Q7V390|PGK_PROMP	****	Phosphoglycerate kinase	IPR001576 (Phosphoglycerate kinase)	GO:0004618 (phosphoglycerate kinase activity), GO:0006096 (glycolytic process)
Niben101Scf18745g01007.1	sp|Q8W1X2|PDXK_ARATH	****	Pyridoxal kinase	IPR004625 (Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase), IPR029056 (Ribokinase-like)	GO:0008478 (pyridoxal kinase activity), GO:0009443 (pyridoxal 5'-phosphate salvage)
Niben101Scf10749g01005.1	ref|XP_007040872.1|	*-*-	Embryo defective 3006, putative isoform 2 [Theobroma cacao] gb|EOY25373.1| Embryo defective 3006, putative isoform 2 [Theobroma cacao]		
Niben101Scf01949g00006.1	sp|Q332X8|PSAA_LACSA	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf09071g01002.1	sp|Q9SK66|NDUA9_ARATH	***-	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf01687g10006.1	gb|ACH59852.1|	--*-	late embryo abundance protein [Pseudotsuga menziesii]		
Niben101Scf04926g06014.1	sp|Q9LQ16|PPR94_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03254g00013.1	sp|Q9LF97|Y3295_ARATH	*-*-	CBS domain-containing protein CBSCBSPB3	IPR000644 (CBS domain)	
Niben101Scf06529g06006.1	AT4G23895.1	***-	Pleckstrin homology (PH) domain-containing protein LENGTH=247	IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf13608g00014.1	ref|NP_198587.1|	***-	alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana] gb|AED94221.1| lipase class 3 family protein / putative calmodulin-binding heat-shock protein [Arabidopsis thaliana]	IPR005592 (Mono-/di-acylglycerol lipase, N-terminal), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0016042 (lipid catabolic process)
Niben101Scf00197g01017.1			Unknown protein		
Niben101Scf05649g01008.1	sp|Q9SZB9|PER47_ARATH	****	Peroxidase 47	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02042g03025.1	sp|Q94AH6|CUL1_ARATH	****	Cullin-1	IPR001373 (Cullin, N-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf05158g01005.1			Unknown protein		
Niben101Scf21552g00001.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf23001g00005.1	sp|Q8GXF0|RA51C_ARATH	*-**	DNA repair protein RAD51 homolog 3	IPR020588 (DNA recombination and repair protein RecA-like, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0008094 (DNA-dependent ATPase activity)
Niben101Scf08531g00007.1	AT5G12040.1	***-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein LENGTH=369	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf06338g00002.1	sp|Q3JMZ7|HIS82_BURP1	*-**	Histidinol-phosphate aminotransferase 2	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01684g02007.1			Unknown protein		
Niben101Scf07129g00006.1	AT2G28660.1	***-	Chloroplast-targeted copper chaperone protein LENGTH=265		
Niben101Scf09626g00001.1			Unknown protein		
Niben101Scf03224g02001.1	emb|CDY35069.1|	***-	BnaA06g10790D [Brassica napus]		
Niben101Scf01954g01019.1	sp|Q88J85|MSUE_PSEPK	--**	FMN reductase (NADPH)	IPR029039 (Flavoprotein-like)	GO:0016491 (oxidoreductase activity)
Niben101Scf03445g02009.1	sp|Q9Y5Z4|HEBP2_HUMAN	***-	Heme-binding protein 2	IPR006917 (SOUL haem-binding protein), IPR011256 (Regulatory factor, effector binding domain)	
Niben101Scf07668g00029.1	ref|XP_007049727.1|	*-*-	Sterile alpha motif domain-containing protein isoform 2 [Theobroma cacao] gb|EOX93884.1| Sterile alpha motif domain-containing protein isoform 2 [Theobroma cacao]		
Niben101Scf00155g03002.1	sp|Q9SF29|SYP71_ARATH	***-	Syntaxin-71	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf00616g01009.1	sp|Q38897|BEL1_ARATH	***-	Homeobox protein BEL1 homolog	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01740g07004.1	AT1G67310.1	****	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains LENGTH=1016	IPR000048 (IQ motif, EF-hand binding site), IPR005559 (CG-1 DNA-binding domain), IPR013783 (Immunoglobulin-like fold), IPR014756 (Immunoglobulin E-set), IPR020683 (Ankyrin repeat-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf01721g05007.1	sp|Q9LD18|POT4_ARATH	*-**	Potassium transporter 4	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf02597g01005.1	sp|Q8GUG9|PUB11_ARATH	*-*-	U-box domain-containing protein 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf07580g07001.1			Unknown protein		
Niben101Scf20924g01010.1	sp|P31244|RAD16_YEAST	*-*-	DNA repair protein RAD16		
Niben101Scf02798g01072.1	sp|Q9LK50|AB26G_ARATH	*-*-	ABC transporter G family member 26		
Niben101Scf00712g06003.1	sp|Q0DJC5|OST1A_ORYSJ	****	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A	IPR007676 (Ribophorin I)	GO:0004579 (dolichyl-diphosphooligosaccharide-protein glycotransferase activity), GO:0005783 (endoplasmic reticulum), GO:0006486 (protein glycosylation), GO:0016021 (integral component of membrane)
Niben101Scf02325g03013.1	sp|Q9M9R6|PPR43_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05732g02006.1	ref|NP_001063350.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf37365g00006.1	gb|AAU89199.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf03412g04002.1	gb|ABD66595.1|	*-**	iron-binding protein [Pyrus pyrifolia]	IPR001519 (Ferritin), IPR008331 (Ferritin/DPS protein domain), IPR009078 (Ferritin-like superfamily)	GO:0006826 (iron ion transport), GO:0006879 (cellular iron ion homeostasis), GO:0008199 (ferric iron binding)
Niben101Scf01300g06017.1	ref|WP_009243252.1|	--*-	MULTISPECIES: beta-N-acetylgluc [Ruminococcus torques CAG:61]		
Niben101Scf06684g00006.1	ref|WP_033003997.1|	***-	glutamine cyclotransferase [Xanthomonas oryzae]	IPR007788 (Glutamine cyclotransferase), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01504g02007.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02239g02007.1	sp|Q9C8P8|BH080_ARATH	***-	Transcription factor bHLH80	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04995g11004.1	sp|Q9FG65|C81D1_ARATH	--*-	Cytochrome P450 81D1		
Niben101Scf03284g05005.1	ref|NP_001289833.1|	****	sodium transporter HKT1 [Solanum lycopersicum] emb|CDI45387.1| membrane Na+ transporter [Solanum lycopersicum]	IPR003445 (Cation transporter)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01022g01001.1	gb|ACO35698.1|	****	invertase inhibitor [Solanum tuberosum]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf03236g03026.1	AT3G54200.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=235	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf00332g06016.1	ref|XP_007031135.1|	*-*-	Histidine kinase cytokinin receptor, putative [Theobroma cacao] gb|EOY11637.1| Histidine kinase cytokinin receptor, putative [Theobroma cacao]		
Niben101Scf07649g01003.1	AT1G55040.1	*-**	zinc finger (Ran-binding) family protein LENGTH=849	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf12245g02006.1	sp|Q6NXH8|MET25_MOUSE	*-*-	Methyltransferase-like protein 25	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf12307g01015.1	sp|F4HPR5|DRP5A_ARATH	*-*-	Dynamin-related protein 5A		
Niben101Scf03906g05007.1	sp|P79149|PININ_CANFA	*-*-	Pinin	IPR006786 (Pinin/SDK/MemA protein)	
Niben101Scf08573g00008.1	sp|B2GUV7|IF2P_RAT	*-*-	Eukaryotic translation initiation factor 5B	IPR009000 (Translation protein, beta-barrel domain)	
Niben101Scf01054g09008.1	ref|XP_007023862.1|	*-*-	O-fuc isoform 1 [Theobroma cacao]		
Niben101Scf00442g04002.1	sp|Q9FZ96|PUP1_ARATH	***-	Purine permease 1	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf02381g08015.1	sp|A4FWA8|RL5_METM5	***-	50S ribosomal protein L5	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08936g05015.1	AT4G24970.1	*-*-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=707	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf05463g01008.1	AT1G66500.1	*-*-	Pre-mRNA cleavage complex II LENGTH=416	IPR006569 (CID domain), IPR007087 (Zinc finger, C2H2), IPR008942 (ENTH/VHS)	GO:0046872 (metal ion binding)
Niben101Scf05582g04009.1	sp|Q9LJR7|XTH3_ARATH	*-**	Xyloglucan endotransglucosylase/hydrolase protein 3	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01557g03005.1	sp|B1JJ30|ARNA_YERPY	***-	Bifunctional polymyxin resistance protein ArnA	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf01623g14008.1	sp|Q6GPW4|TM205_XENLA	***-	Transmembrane protein 205	IPR025423 (Domain of unknown function DUF4149)	
Niben101Scf01999g06013.1	sp|A1VNB7|MSRB_POLNA	****	Peptide methionine sulfoxide reductase MsrB	IPR011057 (Mss4-like), IPR028427 (Peptide methionine sulfoxide reductase)	GO:0006979 (response to oxidative stress), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0030091 (protein repair), GO:0033743 (peptide-methionine (R)-S-oxide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09119g00003.1	sp|Q6A332|ALY3_ARATH	***-	Protein ALWAYS EARLY 3	IPR009057 (Homeodomain-like), IPR010561 (Protein LIN-9/Protein ALWAYS EARLY)	GO:0003677 (DNA binding), GO:0006351 (transcription, DNA-templated), GO:0007049 (cell cycle), GO:0017053 (transcriptional repressor complex)
Niben101Scf03779g06005.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf14470g00003.1	ref|YP_001152179.1|	***-	ORF40p [Pinus koraiensis] gb|ABP35423.1| ORF40p [Pinus koraiensis]		
Niben101Scf00313g08005.1	sp|Q7N8N4|LPXB_PHOLL	*-**	Lipid-A-disaccharide synthase	IPR003835 (Glycosyl transferase, family 19)	GO:0008915 (lipid-A-disaccharide synthase activity), GO:0009245 (lipid A biosynthetic process)
Niben101Scf21684g00013.1	AT1G48480.1	*-**	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg08678g00001.1	ref|XP_007048006.1|	*-*-	Domain of Uncharacterized protein function, putative isoform 1 [Theobroma cacao] gb|EOX92163.1| Domain of Uncharacterized protein function, putative isoform 1 [Theobroma cacao]	IPR010369 (Protein of unknown function DUF966)	
Niben101Scf09087g00009.1	sp|Q9LW49|ERF4_NICSY	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09455g00003.1	sp|Q54XV3|NEDD8_DICDI	-**-	NEDD8	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf02793g17022.1	sp|O35654|DPOD2_MOUSE	*-**	DNA polymerase delta subunit 2	IPR007185 (DNA polymerase alpha/epsilon, subunit B), IPR024826 (DNA polymerase delta/II small subunit family)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication)
Niben101Scf06091g05003.1	AT3G15920.1	***-	Phox (PX) domain-containing protein LENGTH=755	IPR001683 (Phox homologous domain)	GO:0035091 (phosphatidylinositol binding)
Niben101Scf01819g04003.1	sp|Q9FYJ6|BH111_ARATH	*-*-	Transcription factor bHLH111	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf14308g01004.1	sp|Q9FKB5|KRP3_ARATH	****	Cyclin-dependent kinase inhibitor 3	IPR003175 (Cyclin-dependent kinase inhibitor)	GO:0004861 (cyclin-dependent protein serine/threonine kinase inhibitor activity), GO:0005634 (nucleus), GO:0007050 (cell cycle arrest)
Niben101Scf04640g04002.1	sp|Q9ZNS1|RS7_AVIMR	***-	40S ribosomal protein S7	IPR000554 (Ribosomal protein S7e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf25488g00013.1	sp|Q7NZU6|MSBA_CHRVO	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf01464g02008.1			Unknown protein		
Niben101Scf03128g02002.1	sp|Q5R9A7|GP155_PONAB	--*-	Integral membrane protein GPR155		
Niben101Scf10509g02002.1	AT5G04670.1	***-	Enhancer of polycomb-like transcription factor protein LENGTH=766	IPR019542 (Enhancer of polycomb-like, N-terminal), IPR024943 (Enhancer of polycomb protein)	GO:0032777 (Piccolo NuA4 histone acetyltransferase complex), GO:0035267 (NuA4 histone acetyltransferase complex)
Niben101Scf03390g08002.1	sp|O22478|IMA_SOLLC	***-	Importin subunit alpha	IPR002652 (Importin-alpha, importin-beta-binding domain), IPR016024 (Armadillo-type fold), IPR024931 (Importin subunit alpha)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006606 (protein import into nucleus), GO:0008565 (protein transporter activity)
Niben101Scf06866g00004.1	ref|XP_007030920.1|	***-	S-aden , putative isoform 1 [Theobroma cacao]	IPR019410 (Nicotinamide N-methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf22698g00001.1	ref|WP_026719171.1|	*-*-	photosystem reaction center subunit H [Fischerella sp. PCC 9431]	IPR011033 (PRC-barrel-like)	
Niben101Scf00574g02005.1	sp|Q9ZUU0|WRK44_ARATH	*-**	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg15030g00002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004672 (protein kinase activity), GO:0004842 (ubiquitin-protein transferase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016567 (protein ubiquitination), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03693g04003.1	gb|AES60043.2|	-***	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf05720g01001.1			Unknown protein		
Niben101Scf04444g05008.1	sp|Q9W4D2|RNP4F_DROME	--**	RNA-binding protein 4F	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03245g06006.1			Unknown protein		
Niben101Scf00920g05010.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11724g01006.1	sp|P40998|THI4_SCHPO	****	Thiamine thiazole synthase	IPR002922 (Thiazole biosynthetic enzyme Thi4 family)	GO:0006950 (response to stress), GO:0009228 (thiamine biosynthetic process)
Niben101Scf01371g01008.1	gb|AGI15525.1|	*-*-	collinsiaIII-like protein, partial [Collinsia linearis]		
Niben101Scf06156g00001.1	gb|ABC58985.1|	***-	patatin protein [Solanum tuberosum]		
Niben101Scf01334g06005.1	AT3G62260.2	****	Protein phosphatase 2C family protein LENGTH=384	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf01696g05008.1	sp|Q9SR02|MED14_ARATH	*-**	Mediator of RNA polymerase II transcription subunit 14	IPR013947 (Mediator complex, subunit Med14)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf00482g02014.1	emb|CDY11222.1|	***-	BnaA03g00580D [Brassica napus]		
Niben101Scf01063g01006.1	emb|CDY52822.1|	--*-	BnaCnng23560D [Brassica napus]		
Niben101Scf04099g09001.1			Unknown protein		
Niben101Scf00508g06006.1	AT1G75580.1	***-	SAUR-like auxin-responsive protein family LENGTH=108	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf08921g02023.1	sp|P43510|CPR6_CAEEL	*-**	Cathepsin B-like cysteine proteinase 6	IPR013128 (Peptidase C1A)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01209g04002.1	sp|Q58321|Y911_METJA	*-**	Magnesium-chelatase subunit ChlI homolog	IPR000523 (Magnesium chelatase, ChlI subunit), IPR002035 (von Willebrand factor, type A), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0015979 (photosynthesis), GO:0015995 (chlorophyll biosynthetic process), GO:0016851 (magnesium chelatase activity)
Niben101Scf00902g03004.1	sp|Q8W0F1|WOX9_ORYSJ	--*-	WUSCHEL-related homeobox 9		
Niben101Scf08804g02014.1	sp|Q9LE73|NUDT4_ARATH	****	Nudix hydrolase 4	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf00687g00006.1	sp|O22893|GOLS1_ARATH	***-	Galactinol synthase 1	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf27562g00002.1	AT1G21550.1	****	Calcium-binding EF-hand family protein LENGTH=155	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00349g02005.1	sp|O95372|LYPA2_HUMAN	***-	Acyl-protein thioesterase 2	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf01576g00008.1			Unknown protein		
Niben101Scf00059g04025.1	sp|Q07761|RL23A_TOBAC	***-	60S ribosomal protein L23a	IPR005633 (Ribosomal protein L23/L25, N-terminal), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06120g00005.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03978g07014.1	sp|B9SXY8|CSPLE_RICCO	***-	CASP-like protein 4D1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf27876g00001.1	AT3G19960.2	*-**	myosin 1 LENGTH=1176	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf01797g03036.1	ref|XP_007015447.1|	--*-	N-terminal isoform 2 [Theobroma cacao] gb|EOY33066.1| N-terminal isoform 2 [Theobroma cacao]		
Niben101Scf01367g00005.1			Unknown protein		
Niben101Scf02307g02005.1	gb|AFW59200.1|	***-	ser/Thr-rich protein T10 in DGCR region [Zea mays]	IPR008551 (Protein of unknown function DUF833)	
Niben101Scf00328g02008.1	emb|CDY47288.1|	*-*-	BnaA10g03580D [Brassica napus]		
Niben101Scf00200g00021.1	sp|Q17R09|PRP16_BOVIN	****	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding)
Niben101Scf01180g01008.1	AT4G22790.1	*-*-	MATE efflux family protein LENGTH=491		
Niben101Scf01434g01015.1	sp|Q9JID6|ACSL1_CAVPO	***-	Long-chain-fatty-acid--CoA ligase 1	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01124g13005.1			Unknown protein		
Niben101Scf09703g00001.1	sp|Q9SEE5|GALK1_ARATH	****	Galactokinase	IPR006206 (Mevalonate/galactokinase)	GO:0004335 (galactokinase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006012 (galactose metabolic process), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0016773 (phosphotransferase activity, alcohol group as acceptor), GO:0046835 (carbohydrate phosphorylation)
Niben101Scf03189g02008.1	AT1G11090.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=324	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Ctg13892g00001.1	sp|P25853|BAM5_ARATH	****	Beta-amylase 5	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf00854g04090.1			Unknown protein		
Niben101Scf08692g00005.1	sp|Q0UY70|NM111_PHANO	****	Pro-apoptotic serine protease NMA111	IPR001940 (Peptidase S1C), IPR009003 (Trypsin-like cysteine/serine peptidase domain), IPR025926 (PDZ-like domain)	GO:0003824 (catalytic activity), GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf01061g03008.1	sp|Q84MA5|CAAT1_ARATH	*-*-	Cationic amino acid transporter 1	IPR029485 (Cationic amino acid transporter, C-terminal)	
Niben101Scf04283g07023.1			Unknown protein		
Niben101Scf00239g09014.1	sp|Q9M0X5|CRK25_ARATH	*-**	Cysteine-rich receptor-like protein kinase 25	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12718g00002.1	sp|Q93Z32|SIPL1_ARATH	****	Signal peptide peptidase-like 1	IPR006639 (Presenilin/signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf08729g02023.1	sp|Q6NCH9|RL28_RHOPA	*-*-	50S ribosomal protein L28	IPR001383 (Ribosomal protein L28), IPR026569 (Ribosomal protein L28/L24)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf37250g00004.1	sp|Q62896|BET1_RAT	***-	BET1 homolog	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf00854g11098.1	sp|A9NA67|PYRC_COXBR	--*-	Dihydroorotase		
Niben101Scf07366g01015.1	emb|CDY19648.1|	*-*-	BnaC09g29040D [Brassica napus]	IPR021013 (ATPase, vacuolar ER assembly factor, Vma12)	
Niben101Scf02393g02004.1	sp|Q2YDS5|SCNM1_DANRE	*-*-	Sodium channel modifier 1		
Niben101Scf00595g02001.1	AT1G63700.1	****	Protein kinase superfamily protein LENGTH=883	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00584g03033.1	AT3G23530.1	***-	Cyclopropane-fatty-acyl-phospholipid synthase LENGTH=867	IPR003333 (Mycolic acid cyclopropane synthase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008610 (lipid biosynthetic process)
Niben101Scf00705g05008.1	ref|XP_003638652.1|	*-**	Squamous cell carcinoma antigen recognized by T-cells [Medicago truncatula]	IPR011990 (Tetratricopeptide-like helical domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Scf05314g01013.1	sp|Q9LKJ1|HIBC1_ARATH	*-*-	3-hydroxyisobutyryl-CoA hydrolase 1	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04812g01006.1	ref|NP_849739.1|	****	inactive poly [ADP-rib [Arabidopsis thaliana] gb|AEE31453.1| inactive poly [ADP-ribose] polymerase RCD1 [Arabidopsis thaliana]	IPR004170 (WWE domain), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR022003 (RST domain of plant C-terminal)	GO:0003950 (NAD+ ADP-ribosyltransferase activity)
Niben101Scf05134g01011.1	sp|Q9M7X7|RL291_ARATH	***-	60S ribosomal protein L29-1	IPR002673 (Ribosomal protein L29e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02171g00006.1	ref|NP_001150616.1|	****	plasmacytoma 326 homolog [Zea mays] gb|ACG39765.1| nucleotide binding protein [Zea mays] gb|AFW88235.1| nucleotide binding protein [Zea mays]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05431g01005.1			Unknown protein		
Niben101Scf22806g00005.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01435g00008.1	sp|P05522|GUN1_PERAE	***-	Endoglucanase 1	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01266g01009.1	emb|CDX83636.1|	***-	BnaC07g23760D [Brassica napus]	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf01432g04001.1	gb|KEH16419.1|	****	HXXXD-type acyl-transferase family protein [Medicago truncatula]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03376g00008.1	sp|Q6NRL1|AGAP1_XENLA	*-**	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf01289g02018.1			Unknown protein		
Niben101Scf10277g00004.1	emb|CDX77148.1|	-**-	BnaC04g39430D [Brassica napus]		
Niben101Scf05107g02005.1	AT3G07160.1	****	glucan synthase-like 10 LENGTH=1890	IPR003440 (Glycosyl transferase, family 48), IPR026899 (1,3-beta-glucan synthase subunit FKS1-like, domain-1)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf06778g04003.1			Unknown protein		
Niben101Scf00408g04004.1			Unknown protein		
Niben101Scf08445g01003.1			Unknown protein		
Niben101Scf09028g00008.1	AT3G17860.1	***-	jasmonate-zim-domain protein 3 LENGTH=352	IPR010399 (Tify), IPR018467 (CO/COL/TOC1, conserved site)	
Niben101Scf02069g00017.1	AT4G11070.1	****	WRKY family transcription factor LENGTH=313	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01763g02017.1	sp|Q9M069|E137_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 7	IPR012946 (X8 domain)	
Niben101Scf03839g12003.1	sp|Q3EBF7|SLD2_ARATH	****	Delta(8)-fatty-acid desaturase 2	IPR012171 (Fatty acid/sphingolipid desaturase)	GO:0005506 (iron ion binding), GO:0006629 (lipid metabolic process), GO:0006633 (fatty acid biosynthetic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09360g00017.1			Unknown protein		
Niben101Scf05954g02001.1	sp|Q02158|PLC_DICDI	*-**	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase	IPR001192 (Phosphoinositide phospholipase C family), IPR011992 (EF-hand domain pair)	GO:0004435 (phosphatidylinositol phospholipase C activity), GO:0005515 (protein binding), GO:0006629 (lipid metabolic process), GO:0007165 (signal transduction), GO:0008081 (phosphoric diester hydrolase activity), GO:0035556 (intracellular signal transduction)
Niben101Scf05676g06017.1	sp|Q97EI6|RL29_CLOAB	-**-	50S ribosomal protein L29	IPR001854 (Ribosomal protein L29)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00842g00015.1	sp|Q2NQQ2|RSMB_SODGM	*-**	Ribosomal RNA small subunit methyltransferase B	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf05609g00010.1	AT5G58950.1	****	Protein kinase superfamily protein LENGTH=525	IPR011009 (Protein kinase-like domain), IPR015783 (Serine/threonine-protein kinase HT1, plant)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01582g09007.1			Unknown protein		
Niben101Ctg15201g00002.1	ref|NP_001052138.1|	***-	product [Oryza sativa Japonica Group]	IPR024145 (Histone deacetylase complex subunit SAP30/SAP30-like), IPR025718 (Histone deacetylase complex subunit SAP30, Sin3 binding domain)	GO:0005515 (protein binding)
Niben101Scf06876g00009.1	AT3G04890.2	***-	Uncharacterized conserved protein (DUF2358) LENGTH=221	IPR018790 (Protein of unknown function DUF2358)	
Niben101Scf00911g03002.1	sp|Q1IDV1|KAD_PSEE4	--*-	Adenylate kinase	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf03867g00015.1			Unknown protein		
Niben101Scf05197g01003.1	sp|Q5RCY8|K2C71_PONAB	--*-	Keratin, type II cytoskeletal 71		
Niben101Scf08698g02020.1	AT2G34640.1	***-	plastid transcriptionally active 12 LENGTH=527		
Niben101Scf01343g00020.1	sp|O04034|CCX5_ARATH	***-	Cation/calcium exchanger 5	IPR004837 (Sodium/calcium exchanger membrane region)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00338g10006.1	AT1G69960.1	***-	serine/threonine protein phosphatase 2A LENGTH=307	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf01453g11005.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00704g04008.1	sp|Q28CV2|T184C_XENTR	***-	Transmembrane protein 184C	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184)	
Niben101Scf00705g05009.1			Unknown protein		
Niben101Scf03307g08015.1	gb|KEH21323.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf12076g00016.1	AT5G12180.1	****	calcium-dependent protein kinase 17 LENGTH=528	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04722g03006.1	ref|XP_007026694.1|	***-	HEAT repeat-containing protein isoform 2 [Theobroma cacao] gb|EOY07196.1| HEAT repeat-containing protein isoform 2 [Theobroma cacao]	IPR016024 (Armadillo-type fold), IPR021850 (Symplekin/Pta1), IPR022075 (Symplekin  C-terminal)	GO:0005488 (binding)
Niben101Scf03298g03001.1	ref|NP_564394.1|	***-	protein SAMBA [Arabidopsis thaliana] unknown protein [Arabidopsis thaliana] gb|AAM63599.1| unknown [Arabidopsis thaliana] gb|AAO42198.1| unknown protein [Arabidopsis thaliana] gb|AAO64124.1| unknown protein [Arabidopsis thaliana] gb|AEE31462.1| uncharacterized protein [Arabidopsis thaliana]		
Niben101Scf00597g00008.1	AT3G07030.1	*-**	Alba DNA/RNA-binding protein LENGTH=405	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Scf03939g06025.1	sp|Q8BM47|PKHM3_MOUSE	*-*-	Pleckstrin homology domain-containing family M member 3	IPR001683 (Phox homologous domain), IPR025258 (Domain of unknown function DUF4206)	GO:0035091 (phosphatidylinositol binding)
Niben101Scf01061g03007.1	sp|Q84MA5|CAAT1_ARATH	****	Cationic amino acid transporter 1	IPR002293 (Amino acid/polyamine transporter I), IPR004841 (Amino acid permease/ SLC12A domain)	GO:0003333 (amino acid transmembrane transport), GO:0006810 (transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02437g04004.1	gb|ACG48513.1|	--*-	SAUR33 - auxin-responsive SAUR family member [Zea mays]	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf17834g01011.1	ref|WP_017554190.1|	*-*-	ATP-dependent DNA helicase RecQ [Bacillus coagulans]	IPR002121 (HRDC domain), IPR029491 (Helicase Helix-turn-helix domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003824 (catalytic activity), GO:0005622 (intracellular), GO:0044237 (cellular metabolic process)
Niben101Scf01508g01027.1	sp|Q9R062|GLYG_MOUSE	--*-	Glycogenin-1	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf06119g02002.1	sp|O80340|ERF78_ARATH	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04939g02013.1	sp|Q8S8V2|YCF2A_ATRBE	*-*-	Protein Ycf2 A	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf09907g00001.1	AT1G70630.1	*-*-	Nucleotide-diphospho-sugar transferase family protein LENGTH=537	IPR003388 (Reticulon), IPR005069 (Nucleotide-diphospho-sugar transferase)	
Niben101Scf10384g00016.1	sp|O82012|HSP12_SOLPE	***-	17.6 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf01526g04017.1	sp|A4VCM0|NAC45_ARATH	*-*-	NAC domain-containing protein 45	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07778g01022.1	sp|Q7TSE6|ST38L_MOUSE	*-**	Serine/threonine-protein kinase 38-like	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00397g03005.1	sp|Q9FGN3|FB290_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf01692g05003.1	sp|Q8EJR8|DUSB_SHEON	*-**	tRNA-dihydrouridine synthase B	IPR001269 (tRNA-dihydrouridine synthase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008033 (tRNA processing), GO:0017150 (tRNA dihydrouridine synthase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06441g01027.1	sp|P54675|PI3K3_DICDI	*-**	Phosphatidylinositol 3-kinase 3	IPR000008 (C2 domain), IPR011162 (MHC classes I/II-like antigen recognition protein), IPR015433 (Phosphatidylinositol Kinase), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0016303 (1-phosphatidylinositol-3-kinase activity), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor), GO:0046854 (phosphatidylinositol phosphorylation), GO:0048015 (phosphatidylinositol-mediated signaling)
Niben101Scf07428g02018.1	AT4G13020.3	****	Protein kinase superfamily protein LENGTH=444	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02044g08008.1	sp|Q84TE6|NAC22_ARATH	***-	NAC domain-containing protein 21/22	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08011g02002.1	sp|Q3E6Q1|PPR32_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03115g03011.1	sp|P52296|IMB1_RAT	*-*-	Importin subunit beta-1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf05226g08012.1	ref|WP_022800425.1|	***-	secondary thiamine-phosphate synthase enzyme [Deinococcus sp. 2009]	IPR001602 (Uncharacterised protein family UPF0047)	
Niben101Scf01463g05003.1	gb|ACU28609.1|	*-*-	At4g14180-like protein [Arabidopsis lyrata subsp. petraea]		
Niben101Scf00348g11005.1	sp|B0R7G3|RLME_HALS3	*-**	Ribosomal RNA large subunit methyltransferase E	IPR015507 (Ribosomal RNA large subunit methyltransferase E), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0001510 (RNA methylation), GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf02942g00016.1	AT4G22120.1	***-	ERD (early-responsive to dehydration stress) family protein LENGTH=771	IPR003864 (Domain of unknown function DUF221), IPR027815 (Domain of unknown function DUF4463)	GO:0016020 (membrane)
Niben101Scf01922g03013.1	ref|XP_003609494.1|	***-	F-box protein [Medicago truncatula]	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf07664g01009.1	AT5G63870.2	***-	serine/threonine phosphatase 7 LENGTH=413	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf07788g04002.1	sp|Q84JC0|RRP8_ARATH	***-	Ribosomal RNA-processing protein 8	IPR007823 (Methyltransferase-related)	GO:0008168 (methyltransferase activity)
Niben101Scf07109g04018.1	sp|Q7L590|MCM10_HUMAN	*-*-	Protein MCM10 homolog	IPR015408 (Zinc finger, Mcm10/DnaG-type)	GO:0005634 (nucleus), GO:0006260 (DNA replication)
Niben101Scf05678g00004.1			Unknown protein		
Niben101Scf07649g01005.1			Unknown protein		
Niben101Scf02320g00005.1	sp|O81322|LBD31_ARATH	*-*-	LOB domain-containing protein 31	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf00180g01013.1	sp|Q8H5X5|SCAM1_ORYSJ	****	Secretory carrier-associated membrane protein 1	IPR007273 (SCAMP)	GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf06524g02014.1	ref|WP_008236074.1|	*-**	Iron-sulfur cluster assembly protein SufD [Richelia intracellularis] emb|CCH68429.1| Iron-sulfur cluster assembly protein SufD [Richelia intracellularis HH01]	IPR000825 (SUF system FeS cluster assembly, SufBD)	GO:0016226 (iron-sulfur cluster assembly)
Niben101Scf06369g01005.1	sp|B7HWG1|ATKB_BACC7	****	Potassium-transporting ATPase B chain	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0006812 (cation transport), GO:0016021 (integral component of membrane), GO:0019829 (cation-transporting ATPase activity), GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf02345g00006.1	ref|XP_003591103.1|	*-*-	Nucleolar GTPase [Medicago truncatula] gb|AES61354.1| nucleolar GTPase, putative [Medicago truncatula]		
Niben101Scf01192g05016.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01462g00001.1	sp|Q9SGP6|GRXC9_ARATH	***-	Glutaredoxin-C9	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03634g13002.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf02929g06006.1	gb|ACX55016.1|	*-*-	pG1 protein [Bacillus amyloliquefaciens]		
Niben101Scf18347g00015.1	sp|Q84MC7|PYL9_ARATH	***-	Abscisic acid receptor PYL9	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Ctg13751g00001.1	AT3G17690.1	*-*-	cyclic nucleotide gated channel 19 LENGTH=729		
Niben101Scf02367g05018.1	sp|Q0B0Y5|SYS_SYNWW	*-**	Serine--tRNA ligase	IPR002317 (Serine-tRNA ligase, type1)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004828 (serine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006434 (seryl-tRNA aminoacylation)
Niben101Scf10468g00012.1	AT5G16710.1	***-	dehydroascorbate reductase 1 LENGTH=258	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf12858g01009.1	sp|P93332|NOD3_MEDTR	*-*-	Bidirectional sugar transporter N3		
Niben101Scf33211g00002.1	sp|Q9FEL6|LAX3_MEDTR	***-	Auxin transporter-like protein 3	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf05487g01018.1			Unknown protein		
Niben101Ctg03481g00001.1	sp|Q828J2|ARC_STRAW	*-*-	Proteasome-associated ATPase	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf06280g01007.1	AT3G48140.1	***-	B12D protein LENGTH=88	IPR010530 (NADH-ubiquinone reductase complex 1 MLRQ subunit)	
Niben101Scf03115g03025.1	sp|Q03065|RPSB_NOSS1	****	RNA polymerase sigma-B factor	IPR014284 (RNA polymerase sigma-70 like domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Scf01061g04016.1	AT1G30460.1	***-	cleavage and polyadenylation specificity factor 30 LENGTH=631	IPR000571 (Zinc finger, CCCH-type), IPR007275 (YTH domain)	GO:0046872 (metal ion binding)
Niben101Scf03018g13014.1	sp|Q9HT25|GLMS_PSEAE	--*-	Glutamine--fructose-6-phosphate aminotransferase [isomerizing]		
Niben101Scf01552g02007.1	sp|Q69Q47|CIPKO_ORYSJ	*-**	CBL-interacting protein kinase 24	IPR000449 (Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal), IPR011009 (Protein kinase-like domain), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04197g00003.1	emb|CDY24837.1|	***-	BnaA08g14730D [Brassica napus]	IPR007770 (Protein of unknown function DUF679)	
Niben101Scf02298g02001.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02502g14011.1	sp|B2J053|ATP6_NOSP7	*-**	ATP synthase subunit a	IPR000568 (ATPase, F0 complex, subunit A)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf03481g00014.1	AT3G10060.1	***-	FKBP-like peptidyl-prolyl cis-trans isomerase family protein LENGTH=230	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0006457 (protein folding), GO:0030247 (polysaccharide binding)
Niben101Scf05519g01009.1	ref|XP_002519590.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF42801.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf12469g00011.1			Unknown protein		
Niben101Ctg14246g00004.1	sp|Q8RWU5|FBL3_ARATH	***-	F-box/LRR-repeat protein 3	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf07353g00003.1	sp|Q9FJD0|VP26A_ARATH	***-	Vacuolar protein sorting-associated protein 26A	IPR028934 (Vacuolar protein sorting protein 26 related)	
Niben101Scf08273g00008.1	AT4G36195.1	****	Serine carboxypeptidase S28 family protein LENGTH=488	IPR008758 (Peptidase S28), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf00139g00004.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03927g03005.1	sp|Q9HDW7|ATC2_SCHPO	***-	Calcium-transporting ATPase 2	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf17594g00002.1	sp|Q9SY66|FRS11_ARATH	***-	Protein FAR1-RELATED SEQUENCE 11	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type), IPR018289 (MULE transposase domain)	GO:0008270 (zinc ion binding)
Niben101Scf10222g06004.1	sp|Q6ZSG1|RN165_HUMAN	--*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00663g02004.1	gb|AAM47025.1|	*-*-	nam-like protein 1 [Petunia x hybrida]		
Niben101Scf21813g00014.1	sp|Q8H0X6|CYT6_ARATH	*-**	Cysteine proteinase inhibitor 6	IPR000010 (Proteinase inhibitor I25, cystatin), IPR027214 (Cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf10866g00013.1	AT5G15240.1	***-	Transmembrane amino acid transporter family protein LENGTH=423	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf28250g00012.1	sp|P40170|DNAJ1_STRCO	--*-	Chaperone protein DnaJ 1	IPR001623 (DnaJ domain), IPR007872 (Zinc finger, DPH-type)	
Niben101Scf00211g00044.1	ref|XP_007041919.1|	***-	Non-imprinted in Prader-Willi/Angelman syndrome region protein [Theobroma cacao] gb|EOX97750.1| Non-imprinted in Prader-Willi/Angelman syndrome region protein [Theobroma cacao]	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf02658g01007.1	gb|ACM43526.1|	*-*-	phosphatidylinositol-specific phospholipase c [Listeria monocytogenes]	IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain)	GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Scf04103g03014.1	ref|WP_026733466.1|	*-*-	cyclase [Fischerella sp. PCC 9605]	IPR005031 (Streptomyces cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf02720g06003.1	sp|A4IHK8|DCNL3_XENTR	--*-	DCN1-like protein 3		
Niben101Scf04375g02022.1			Unknown protein		
Niben101Scf05028g00021.1			Unknown protein		
Niben101Scf05241g01001.1	sp|P21434|RK2_NICDE	--*-	50S ribosomal protein L2, chloroplastic		
Niben101Scf00883g06007.1	ref|NP_001279484.1|	****	CCHC-type zinc finger, nucleic acid binding protein [Callorhinchus milii] gb|AFM89464.1| cellular nucleic acid-binding protein-like protein [Callorhinchus milii]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02072g03010.1	AT5G19830.1	****	Peptidyl-tRNA hydrolase family protein LENGTH=219	IPR001328 (Peptidyl-tRNA hydrolase)	GO:0004045 (aminoacyl-tRNA hydrolase activity)
Niben101Scf12289g01032.1	ref|XP_003600616.1|	--*-	Zinc finger CCCH domain-containing protein [Medicago truncatula]		
Niben101Scf22099g01001.1	sp|Q69KJ0|RTL3_ORYSJ	*-**	Ribonuclease 3-like protein 3	IPR000999 (Ribonuclease III domain)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0006396 (RNA processing)
Niben101Scf08242g00002.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01006g01007.1	sp|Q86MW9|SINA_SCHMA	****	E3 ubiquitin-protein ligase sina	IPR004162 (E3 ubiquitin-protein ligase SINA like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf01409g04014.1	AT4G25770.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=418	IPR007751 (Domain of unknown function DUF676, lipase-like), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf32862g01011.1	sp|Q5T2S8|ARMC4_HUMAN	*-*-	Armadillo repeat-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf01596g09006.1	sp|Q17QU7|DHR13_BOVIN	*-**	Dehydrogenase/reductase SDR family member 13	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01013g00003.1	AT2G32830.1	*-*-	phosphate transporter 1;5 LENGTH=542	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf03036g07008.1	sp|P52299|NCBP2_XENLA	--**	Nuclear cap-binding protein subunit 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf16234g01013.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf08984g01011.1			Unknown protein		
Niben101Scf07087g00008.1	sp|Q54FE8|RPA49_DICDI	--**	DNA-directed RNA polymerase I subunit rpa49	IPR009668 (RNA polymerase I associated factor, A49-like)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf06770g00026.1	AT1G68390.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=408	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf04871g17009.1	sp|Q9SEK2|HXK1_TOBAC	*-*-	Hexokinase-1	IPR001312 (Hexokinase)	GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf07424g02021.1	sp|Q553S1|ZN593_DICDI	***-	Zinc finger protein 593 homolog	IPR022755 (Zinc finger, double-stranded RNA binding)	
Niben101Scf01832g01014.1	ref|XP_002526350.1|	****	GTP binding protein, putative [Ricinus communis] gb|EEF36021.1| GTP binding protein, putative [Ricinus communis]	IPR006073 (GTP binding domain), IPR023179 (GTP-binding protein, orthogonal bundle domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Ctg16034g00002.1	sp|Q9LL84|DNLI4_ARATH	*-**	DNA ligase 4	IPR012308 (DNA ligase, ATP-dependent, N-terminal), IPR029710 (DNA ligase 4)	GO:0003677 (DNA binding), GO:0003910 (DNA ligase (ATP) activity), GO:0005524 (ATP binding), GO:0006281 (DNA repair), GO:0006310 (DNA recombination), GO:0051103 (DNA ligation involved in DNA repair)
Niben101Scf06183g03002.1	gb|ACJ23466.1|	--*-	FI08268p [Drosophila melanogaster]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01184g11003.1	sp|Q03237|MYBB_CHICK	*-*-	Myb-related protein B	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Ctg07590g00002.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00595g08009.1	sp|Q8N567|ZCHC9_HUMAN	*-**	Zinc finger CCHC domain-containing protein 9	IPR001878 (Zinc finger, CCHC-type), IPR025836 (Zinc knuckle CX2CX4HX4C)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf06829g03010.1	AT1G31480.1	***-	shoot gravitropism 2 (SGR2) LENGTH=933	IPR004177 (DDHD), IPR029058 (Alpha/Beta hydrolase fold)	GO:0046872 (metal ion binding)
Niben101Scf07788g01009.1	sp|Q61550|RAD21_MOUSE	*-*-	Double-strand-break repair protein rad21 homolog	IPR006910 (Rad21/Rec8-like protein, N-terminal)	GO:0005515 (protein binding)
Niben101Scf02553g02026.1	gb|ACG30430.1|	--*-	Pi starvation-induced protein [Zea mays]		
Niben101Scf03523g01001.1	emb|CDY35740.1|	--*-	BnaC03g58610D [Brassica napus]		
Niben101Scf03653g00002.1	ref|NP_001147322.1|	****	milkweed pod1 [Zea mays] gb|ACG26785.1| myb-like DNA-binding domain, SHAQKYF class family protein [Zea mays] gb|ACH56977.1| milkweed pod1 [Zea mays] tpg|DAA61335.1| TPA: LOW QUALITY PROTEIN: milkweed pod1 [Zea mays]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf15109g01004.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf12258g01010.1	sp|Q84N34|HHP2_ARATH	*-*-	Heptahelical transmembrane protein 2	IPR004254 (AdipoR/Haemolysin-III-related)	GO:0016021 (integral component of membrane)
Niben101Scf02842g01013.1	AT3G17080.1	***-	Plant self-incompatibility protein S1 family LENGTH=134	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf18696g00007.1	sp|Q6EP49|MAD27_ORYSJ	*-**	MADS-box transcription factor 27	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03015g07008.1	dbj|GAK65337.1|	***-	conserved hypothetical protein [Pseudozyma antarctica]		
Niben101Scf03952g00011.1	ref|XP_003602207.1|	*-**	Poly(A) RNA polymerase cid14 [Medicago truncatula] gb|AES72458.1| nucleotidyltransferase [Medicago truncatula]	IPR002934 (Nucleotidyl transferase domain)	GO:0016779 (nucleotidyltransferase activity)
Niben101Scf01479g02001.1	AT1G65810.1	*-*-	P-loop containing nucleoside triphosphate hydrolases superfamily protein LENGTH=1050	IPR011990 (Tetratricopeptide-like helical domain), IPR014016 (UvrD-like Helicase, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf00626g02022.1	sp|Q86JD4|SEC11_DICDI	****	Signal peptidase complex catalytic subunit sec11	IPR001733 (Peptidase S26B, eukaryotic signal peptidase), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016020 (membrane)
Niben101Scf01851g03014.1	sp|O65743|RL24_CICAR	*-*-	60S ribosomal protein L24	IPR000988 (Ribosomal protein L24e-related), IPR023441 (Ribosomal protein L24e domain), IPR023442 (Ribosomal protein L24e, conserved site)	
Niben101Scf06064g00002.1	sp|Q940S0|TMN2_ARATH	***-	Transmembrane 9 superfamily member 2	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf00712g11002.1	gb|AFW59200.1|	***-	ser/Thr-rich protein T10 in DGCR region [Zea mays]	IPR008551 (Protein of unknown function DUF833)	
Niben101Scf07935g02019.1	sp|P0ABI1|CLPA_ECO57	*-**	ATP-dependent Clp protease ATP-binding subunit ClpA	IPR001270 (ClpA/B family), IPR001943 (UVR domain), IPR004176 (Clp, N-terminal), IPR019489 (Clp ATPase, C-terminal), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028299 (ClpA/B, conserved site 2)	GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0019538 (protein metabolic process)
Niben101Scf25617g00008.1	AT5G60870.1	*-*-	Regulator of chromosome condensation (RCC1) family protein LENGTH=445	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf05047g03009.1	AT5G42420.1	***-	Nucleotide-sugar transporter family protein LENGTH=350	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf09189g01003.1	gb|AAK13103.1|AC078839_19	*-*-	Helicase-like protein [Oryza sativa Japonica Group]		
Niben101Scf03714g05009.1	gb|ACG40354.1|	***-	COX VIIa-like protein [Zea mays]	IPR003177 (Cytochrome c oxidase, subunit VIIa)	GO:0004129 (cytochrome-c oxidase activity), GO:0005746 (mitochondrial respiratory chain), GO:0009055 (electron carrier activity)
Niben101Scf07169g02008.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03947g00011.1	ref|WP_011827370.1|	-***	universal stress protein [Prochlorococcus marinus] ref|YP_001018793.1| universal stress protein [Prochlorococcus marinus str. MIT 9303] gb|ABM79528.1| Universal stress protein (Usp) [Prochlorococcus marinus str. MIT 9303]	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf10067g00004.1	AT5G64950.1	****	Mitochondrial transcription termination factor family protein LENGTH=391	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11785g01009.1	sp|Q2KNL5|CADH1_OCIBA	***-	Cinnamyl alcohol dehydrogenase 1	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01171g06009.1	sp|F6Z5C0|UBP15_XENTR	*-**	Ubiquitin carboxyl-terminal hydrolase 15	IPR001607 (Zinc finger, UBP-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0008270 (zinc ion binding), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf08280g03020.1	sp|Q8VYE5|E1312_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 12	IPR012946 (X8 domain)	
Niben101Scf04639g06010.1	sp|P46903|NATA_BACSU	*-**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00646g07010.1	emb|CDY51989.1|	--*-	BnaC03g75650D [Brassica napus]		
Niben101Scf07147g02003.1	sp|A4QND5|NIP7_XENTR	****	60S ribosome subunit biogenesis protein NIP7 homolog	IPR005155 (Ribosome biogenesis factor NIP7-like)	GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0042255 (ribosome assembly)
Niben101Scf00372g03023.1			Unknown protein		
Niben101Scf05869g00008.1	sp|Q5D7J1|TRIM5_PANTR	--*-	Tripartite motif-containing protein 5	IPR004331 (SPX, N-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09929g01001.1	sp|Q41009|TOC34_PEA	*-*-	Translocase of chloroplast 34	IPR005690 (Chloroplast protein import component Toc86/159), IPR024283 (Domain of unknown function DUF3406, chloroplast translocase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides)
Niben101Scf00620g02007.1	gb|AID21636.1|	***-	At4g21420p-like protein [Arabidopsis lyrata]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf03202g08006.1	sp|Q9LYN8|EXS_ARATH	***-	Leucine-rich repeat receptor protein kinase EXS	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf05678g02013.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02074g04011.1	ref|YP_009045810.1|	***-	orf189 (mitochondrion) [Batis maritima] gb|AIC83413.1| orf189 (mitochondrion) [Batis maritima]		
Niben101Scf02073g01008.1	AT5G54160.1	****	O-methyltransferase 1 LENGTH=363	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf04477g03012.1	AT5G42570.1	****	B-cell receptor-associated 31-like LENGTH=218	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf01053g01016.1	sp|Q9ZUI6|AP1G2_ARATH	***-	AP-1 complex subunit gamma-2	IPR016024 (Armadillo-type fold), IPR017107 (Adaptor protein complex AP-1, gamma subunit)	GO:0005488 (binding), GO:0005794 (Golgi apparatus), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf00687g02010.1	AT5G62960.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=347		
Niben101Scf09092g02011.1	sp|Q8GWK5|GASA9_ARATH	*-*-	Gibberellin-regulated protein 9	IPR003854 (Gibberellin regulated protein)	
Niben101Scf07402g03006.1	sp|Q9LE73|NUDT4_ARATH	****	Nudix hydrolase 4	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf17947g00004.1	AT2G42700.2	*-**	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages;	IPR001619 (Sec1-like protein), IPR027482 (Sec1-like, domain 2)	GO:0006904 (vesicle docking involved in exocytosis), GO:0016192 (vesicle-mediated transport)
Niben101Scf09052g02002.1	AT3G47550.3	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=288	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022143 (Protein of unknown function DUF3675)	GO:0008270 (zinc ion binding)
Niben101Scf01383g07006.1	ref|XP_003629707.1|	***-	Translation initiation factor eIF-2B subunit gamma [Medicago truncatula]	IPR001451 (Bacterial transferase hexapeptide repeat), IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf02262g01001.1	AT5G54530.1	***-	Protein of unknown function, DUF538 LENGTH=161	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf08817g01015.1	emb|CDY37079.1|	***-	BnaA04g26570D [Brassica napus]		
Niben101Scf01520g01003.1	AT1G03220.1	***-	Eukaryotic aspartyl protease family protein LENGTH=433	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01591g00022.1	sp|P46279|RPB7_SOYBN	****	DNA-directed RNA polymerase II subunit RPB7	IPR005576 (RNA polymerase Rpb7, N-terminal), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf00861g04008.1	ref|XP_006375099.1|	--**	invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa] gb|ERP52896.1| invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf13525g02003.1	sp|Q9LZ76|PHYK1_ARATH	*-*-	Phytol kinase 1, chloroplastic		
Niben101Scf05440g00008.1	sp|Q9FN94|RLK7_ARATH	*-*-	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf05827g02001.1	sp|Q9SLG0|NFYB1_ARATH	***-	Nuclear transcription factor Y subunit B-1	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf03362g01016.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]	IPR002182 (NB-ARC)	GO:0043531 (ADP binding)
Niben101Scf02892g01018.1	sp|Q9FEX0|OPRL_SOLLC	****	12-oxophytodienoate reductase-like protein	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00964g05013.1	gb|ACY07934.1|	*-*-	Ycf1 [Cynomorium songaricum]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf00458g04002.1	sp|P43349|TCTP_SOLTU	***-	Translationally-controlled tumor protein homolog	IPR018105 (Translationally controlled tumour protein)	
Niben101Scf03951g02008.1	AT4G22770.1	***-	AT hook motif DNA-binding family protein LENGTH=334	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf04403g00003.1	AT3G26560.1	*-*-	ATP-dependent RNA helicase, putative LENGTH=1168	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Ctg12623g00001.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07158g00017.1	AT2G37420.1	****	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf01462g02022.1	sp|Q6XJG8|PSD2B_ARATH	****	26S proteasome non-ATPase regulatory subunit 2 homolog B	IPR016643 (26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit)	GO:0000502 (proteasome complex), GO:0005488 (binding), GO:0030234 (enzyme regulator activity), GO:0042176 (regulation of protein catabolic process)
Niben101Scf01109g04005.1	gb|ABY88583.1|	***-	NHL1, partial [Arabidopsis thaliana]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf07793g00001.1	sp|O27125|RPOA1_METTH	--**	DNA-directed RNA polymerase subunit A'	IPR015699 (DNA-directed RNA pol I, largest subunit)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf12414g04010.1	sp|Q9FHM4|MA653_ARATH	****	65-kDa microtubule-associated protein 3	IPR007145 (Microtubule-associated protein, MAP65/Ase1/PRC1)	GO:0000226 (microtubule cytoskeleton organization), GO:0000910 (cytokinesis), GO:0008017 (microtubule binding)
Niben101Scf03273g02002.1	ref|XP_002526802.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35537.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05115g03006.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02085g26017.1	sp|Q9BTT6|LRRC1_HUMAN	***-	Leucine-rich repeat-containing protein 1		
Niben101Scf06252g01025.1	AT5G22860.1	****	Serine carboxypeptidase S28 family protein LENGTH=502	IPR008758 (Peptidase S28), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf09603g04011.1	AT1G09160.2	***-	Protein phosphatase 2C family protein LENGTH=428	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf00690g01004.1	sp|Q7WFS0|MURD_BORBR	****	UDP-N-acetylmuramoylalanine--D-glutamate ligase	IPR004101 (Mur ligase, C-terminal), IPR013221 (Mur ligase, central), IPR016040 (NAD(P)-binding domain)	GO:0005524 (ATP binding), GO:0009058 (biosynthetic process), GO:0016874 (ligase activity)
Niben101Scf05278g05007.1	sp|Q6ERS4|CIPKG_ORYSJ	*-**	CBL-interacting protein kinase 16	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06886g01011.1	sp|Q9FLE9|PRE1_ARATH	***-	Transcription factor PRE1	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00028g00002.1	emb|CDY65610.1|	***-	BnaC05g51730D [Brassica napus]	IPR007650 (Zf-FLZ domain)	
Niben101Scf03930g04011.1	AT5G20100.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=113		
Niben101Scf02565g02023.1	gb|EEQ87690.1|	-**-	conserved hypothetical protein [Ajellomyces dermatitidis ER-3]		
Niben101Scf00369g17008.1	sp|Q0V389|RRP36_PHANO	*-*-	rRNA biogenesis protein RRP36	IPR009292 (Protein of unknown function DUF947)	
Niben101Scf00854g09089.1	gb|AIE42546.1|	*-*-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf06207g01016.1	sp|A4W9T2|MDTK_ENT38	*-*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01353g02011.1	sp|B7JJ46|MUTL_BACC0	*-**	DNA mismatch repair protein MutL	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR028831 (DNA mismatch repair protein Pms1/Pms2)	GO:0006298 (mismatch repair), GO:0032300 (mismatch repair complex)
Niben101Scf14374g00001.1	sp|B9E9K7|RL18_MACCJ	***-	50S ribosomal protein L18	IPR005484 (Ribosomal protein L18/L5)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01642g03011.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02322g06002.1	AT5G42630.1	***-	Homeodomain-like superfamily protein LENGTH=276	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02819g04005.1	AT3G15900.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=141		
Niben101Scf06501g00006.1	ref|NP_001051638.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf04099g03013.1	AT2G07739.1	*-*-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf00980g07018.1	sp|Q55276|LCYB_SYNE7	***-	Lycopene beta cyclase	IPR008671 (Lycopene cyclase-type, FAD-binding)	GO:0016117 (carotenoid biosynthetic process), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen)
Niben101Scf01750g01001.1	AT4G24480.1	*-**	Protein kinase superfamily protein LENGTH=956	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01210g00011.1	ref|YP_009045810.1|	*-*-	orf189 (mitochondrion) [Batis maritima] gb|AIC83413.1| orf189 (mitochondrion) [Batis maritima]		
Niben101Scf23113g00009.1	emb|CDX98828.1|	***-	BnaC09g50070D [Brassica napus]		
Niben101Scf01383g00019.1	sp|Q8FM78|DNAK_COREF	--*-	Chaperone protein DnaK		
Niben101Scf01063g01007.1			Unknown protein		
Niben101Scf04779g01020.1	sp|Q95LY5|TTC12_MACFA	*-*-	Tetratricopeptide repeat protein 12	IPR006636 (Heat shock chaperonin-binding), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03798g00008.1	ref|NP_001051816.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf01025g01013.1	AT4G38970.1	****	fructose-bisphosphate aldolase 2 LENGTH=398	IPR000741 (Fructose-bisphosphate aldolase, class-I), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004332 (fructose-bisphosphate aldolase activity), GO:0006096 (glycolytic process)
Niben101Scf09044g00005.1	AT2G07772.1	*-*-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=179		
Niben101Scf02286g01013.1	sp|Q9SXD8|PPR90_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain), IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0005515 (protein binding), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity)
Niben101Scf02111g16022.1	sp|Q9CR41|HYPK_MOUSE	***-	Huntingtin-interacting protein K		
Niben101Scf03872g02027.1	sp|Q58CR4|DOLK_BOVIN	*-**	Dolichol kinase	IPR026566 (Dolichol kinase)	GO:0004168 (dolichol kinase activity), GO:0030176 (integral component of endoplasmic reticulum membrane), GO:0043048 (dolichyl monophosphate biosynthetic process)
Niben101Scf01085g02012.1	AT2G30520.1	***-	Phototropic-responsive NPH3 family protein LENGTH=593	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain), IPR029958 (Root phototropism protein 2)	GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0009638 (phototropism)
Niben101Scf00022g00003.1	gb|AFI44321.1|	***-	maturase (mitochondrion) [Silene vulgaris]	IPR000477 (Reverse transcriptase domain), IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf12369g01002.1	AT4G36830.1	****	GNS1/SUR4 membrane protein family LENGTH=289	IPR002076 (ELO family)	GO:0016021 (integral component of membrane)
Niben101Scf05680g00014.1	emb|CDY38444.1|	*-*-	BnaA10g17140D [Brassica napus]		
Niben101Scf04754g03005.1	sp|Q6ZI17|OML2_ORYSJ	***-	Protein MEI2-like 2	IPR007201 (RNA recognition motif 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf00200g00020.1			Unknown protein		
Niben101Scf08207g00001.1	sp|A7FDT6|AAEB_YERP3	--*-	p-hydroxybenzoic acid efflux pump subunit AaeB	IPR006726 (Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein)	GO:0005886 (plasma membrane), GO:0006810 (transport)
Niben101Scf06423g01014.1	AT5G47710.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=166	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf17490g00019.1	AT3G07170.1	***-	Sterile alpha motif (SAM) domain-containing protein LENGTH=203	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf01556g04021.1	sp|Q9WVK4|EHD1_MOUSE	***-	EH domain-containing protein 1	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00559g02004.1	gb|ACG48000.1|	***-	holocarboxylase synthetase [Zea mays]	IPR016549 (Uncharacterised conserved protein UCP009193)	
Niben101Scf28259g00019.1	sp|Q5T2S8|ARMC4_HUMAN	*-*-	Armadillo repeat-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02543g04012.1	sp|P51156|RAB26_RAT	***-	Ras-related protein Rab-26	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf00367g03019.1			Unknown protein		
Niben101Scf03438g00001.1	sp|Q9SS44|TF2B2_ARATH	****	Transcription initiation factor IIB-2	IPR000812 (Transcription factor TFIIB)	GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0017025 (TBP-class protein binding)
Niben101Scf08193g00002.1			Unknown protein		
Niben101Scf01005g00007.1	emb|CDY21585.1|	--*-	BnaC09g47070D [Brassica napus]		
Niben101Scf05270g02006.1	sp|A4QNC6|F136A_XENTR	***-	Protein FAM136A	IPR008560 (Protein of unknown function DUF842, eukaryotic)	
Niben101Scf01124g13006.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf03241g00017.1	emb|CDY08789.1|	***-	BnaA06g24350D [Brassica napus]		
Niben101Scf00526g00005.1	AT5G05690.1	*-*-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09648g03017.1	sp|Q84J70|DI193_ARATH	***-	Protein DEHYDRATION-INDUCED 19 homolog 3	IPR008598 (Drought induced 19 protein-like, zinc-binding domain), IPR027935 (Protein dehydration-induced 19, C-terminal)	
Niben101Scf01520g01004.1	gb|AEG74550.1|	*-*-	xyloglucan specific endoglucanase inhibitor [Solanum tuberosum]	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02312g00005.1	sp|A7MCT6|EKI2_MOUSE	***-	Ethanolamine kinase 2	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01752g10008.1	sp|Q8S397|NHX4_ARATH	****	Sodium/hydrogen exchanger 4	IPR006153 (Cation/H+ exchanger), IPR018422 (Cation/H+ exchanger, CPA1 family)	GO:0005774 (vacuolar membrane), GO:0005886 (plasma membrane), GO:0006812 (cation transport), GO:0006814 (sodium ion transport), GO:0009651 (response to salt stress), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055075 (potassium ion homeostasis), GO:0055085 (transmembrane transport)
Niben101Scf10747g00018.1	emb|CDY09808.1|	***-	BnaC09g43530D [Brassica napus]		
Niben101Scf00362g00017.1			Unknown protein		
Niben101Scf05932g03007.1	sp|P28178|PK2_DICDI	*-**	Protein kinase 2	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07494g00009.1			Unknown protein		
Niben101Scf06162g00016.1	AT5G48060.1	*-*-	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1036	IPR013583 (Phosphoribosyltransferase C-terminal)	
Niben101Scf01082g02019.1	sp|O88531|PPT1_MOUSE	****	Palmitoyl-protein thioesterase 1	IPR002472 (Palmitoyl protein thioesterase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0002084 (protein depalmitoylation), GO:0008474 (palmitoyl-(protein) hydrolase activity), GO:0098599 (palmitoyl hydrolase activity)
Niben101Scf00239g04001.1	dbj|BAH57073.1|	***-	[Arabidopsis thaliana]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00839g04009.1	ref|NP_199396.1|	--*-	leucine-rich repeat protein kinase family protein [Arabidopsis thaliana] gb|AED95305.1| leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]		
Niben101Scf00953g00003.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR012340 (Nucleic acid-binding, OB-fold), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03755g04002.1	sp|Q9ST99|PROF2_TOBAC	***-	Profilin-2	IPR005455 (Profilin)	
Niben101Scf05437g00001.1	sp|A8AH48|MDTK_CITK8	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf14338g01005.1	AT3G50660.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10919g01026.1	gb|ADV59380.1|	***-	GAGA-binding transcriptional activator [Helianthus annuus]	IPR010409 (GAGA-binding transcriptional activator)	
Niben101Scf02223g06001.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf02601g04010.1	sp|P43177|BEV1D_BETPN	***-	Major pollen allergen Bet v 1-D/H	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf02074g04010.1	sp|Q8SJL2|CYB_EMYOR	*-*-	Cytochrome b	IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0016020 (membrane), GO:0022904 (respiratory electron transport chain)
Niben101Scf06954g03023.1	sp|Q32PE9|LSM3_BOVIN	***-	U6 snRNA-associated Sm-like protein LSm3	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf01750g07004.1	sp|Q9LT79|PUB25_ARATH	*-*-	U-box domain-containing protein 25	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01931g03001.1	emb|CDY70488.1|	--*-	BnaUnng03880D, partial [Brassica napus]		
Niben101Scf09082g00001.1	sp|Q9FLC0|PER52_ARATH	****	Peroxidase 52	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00527g01009.1	AT4G00110.1	****	UDP-D-glucuronate 4-epimerase 3 LENGTH=430	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf06436g05010.1	AT2G21340.1	*-*-	MATE efflux family protein LENGTH=559	IPR029303 (Polysaccharide biosynthesis protein, C-terminal domain)	
Niben101Scf00780g02001.1	sp|B9FDR3|TNPO1_ORYSJ	***-	Transportin-1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf03757g04007.1	emb|CDY71828.1|	***-	BnaAnng38910D [Brassica napus]		
Niben101Scf03018g05013.1	AT1G31160.1	*-*-	HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 LENGTH=187	IPR001310 (Histidine triad (HIT) protein), IPR011146 (HIT-like domain)	GO:0003824 (catalytic activity)
Niben101Scf00254g08006.1	sp|Q940T9|COL4_ARATH	*-*-	Zinc finger protein CONSTANS-LIKE 4	IPR010402 (CCT domain)	GO:0005515 (protein binding)
Niben101Scf11325g00022.1	sp|Q8VWK4|TRB1_ARATH	****	Telomere repeat-binding factor 1	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf02318g01005.1	emb|CDX96261.1|	*-*-	BnaC02g13900D [Brassica napus]		
Niben101Scf02864g11007.1	sp|Q9XHE4|RL37A_GOSHI	***-	60S ribosomal protein L37a	IPR002674 (Ribosomal protein L37ae), IPR011332 (Zinc-binding ribosomal protein)	
Niben101Scf05251g01002.1	sp|Q9LE73|NUDT4_ARATH	****	Nudix hydrolase 4	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf00851g05008.1	sp|Q6D437|MSBA_PECAS	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf00264g00002.1	sp|P33607|NUOL_ECOLI	*-**	NADH-quinone oxidoreductase subunit L	IPR003945 (NADH-plastoquinone oxidoreductase, chain 5)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf03107g01007.1	sp|Q9FKI0|FIMB5_ARATH	*-*-	Fimbrin-5	IPR001715 (Calponin homology domain)	GO:0005515 (protein binding)
Niben101Scf07030g08005.1			Unknown protein		
Niben101Scf02426g01009.1	sp|Q96P64|AGAP4_HUMAN	****	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 4	IPR001164 (Arf GTPase activating protein), IPR011993 (Pleckstrin homology-like domain), IPR020683 (Ankyrin repeat-containing domain), IPR027267 (Arfaptin homology (AH) domain/BAR domain)	GO:0005515 (protein binding), GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf04989g02007.1	sp|B3H4K7|PPI2_ARATH	****	Proton pump-interactor 2	IPR029669 (Proton pump-interactor)	GO:0005783 (endoplasmic reticulum), GO:0005886 (plasma membrane), GO:0010155 (regulation of proton transport)
Niben101Scf05552g10005.1	ref|WP_025626957.1|	****	ABC transporter ATP-binding protein [Vibrio parahaemolyticus]	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf09475g01001.1			Unknown protein		
Niben101Ctg00129g00001.1	sp|Q5RCW9|OTOGL_PONAB	--*-	Otogelin-like protein		
Niben101Scf13260g00004.1	AT4G18372.1	***-	Small nuclear ribonucleoprotein family protein LENGTH=112	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf01397g00010.1	sp|Q8WSF1|H33_TRIPS	***-	Histone H3.3	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf07533g03003.1	sp|Q67ZI9|GDL48_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf05363g03006.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00138g01020.1	sp|F4IXW2|BIG5_ARATH	****	Brefeldin A-inhibited guanine nucleotide-exchange protein 5	IPR000904 (Sec7 domain), IPR016024 (Armadillo-type fold), IPR023394 (Sec7 domain, alpha orthogonal bundle)	GO:0005086 (ARF guanyl-nucleotide exchange factor activity), GO:0005488 (binding), GO:0032012 (regulation of ARF protein signal transduction)
Niben101Scf18730g00029.1	emb|CCQ73689.1|	***-	Conserved hypothetical protein; putative Acyl-CoA N-acyltransferase domain [Magnetospira sp. QH-2]	IPR007434 (Protein of unknown function DUF482)	
Niben101Scf04772g00004.1	gb|EMS45642.1|	*-*-	1-aminocyclopropane-1-carboxylate oxidase 2 [Triticum urartu]	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf02074g07009.1			Unknown protein		
Niben101Scf07323g02022.1	sp|Q5XVJ4|FAN1_ARATH	*-*-	Fanconi-associated nuclease 1 homolog		
Niben101Scf00837g12015.1	ref|XP_002519967.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF42415.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf12757g00008.1	sp|Q39247|2ABB_ARATH	****	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	IPR000009 (Protein phosphatase 2A, regulatory subunit PR55), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0000159 (protein phosphatase type 2A complex), GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf04921g00006.1	sp|Q9FWA6|PP207_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf14470g00002.1	sp|Q38857|XTH22_ARATH	*-**	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR010713 (Xyloglucan endo-transglycosylase, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf00055g03018.1	sp|Q9FJR0|RENT1_ARATH	*-*-	Regulator of nonsense transcripts 1 homolog		
Niben101Scf00332g06017.1	sp|Q86AT9|DHKI_DICDI	*-**	Hybrid signal transduction histidine kinase I	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf00108g06008.1	ref|XP_007025667.1|	*-*-	Tetratricopeptide repeat-like superfamily protein, putative isoform 2 [Theobroma cacao] gb|EOY28289.1| Tetratricopeptide repeat-like superfamily protein, putative isoform 2 [Theobroma cacao]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02133g03018.1	sp|P06738|PHSG_YEAST	*-**	Glycogen phosphorylase	IPR000811 (Glycosyl transferase, family 35)	GO:0005975 (carbohydrate metabolic process), GO:0008184 (glycogen phosphorylase activity)
Niben101Scf03236g03025.1	ref|XP_007031332.1|	***-	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao] gb|EOY02258.1| Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf06958g00006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07736g02001.1	sp|Q7XJ98|KATAM_ARATH	***-	Xyloglucan galactosyltransferase KATAMARI1	IPR004263 (Exostosin-like)	
Niben101Scf09535g01003.1			Unknown protein		
Niben101Scf08691g00013.1	sp|Q9NW13|RBM28_HUMAN	*-**	RNA-binding protein 28	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05283g00014.1	sp|P42698|DR111_ARATH	***-	DNA-damage-repair/toleration protein DRT111, chloroplastic	IPR016967 (Splicing factor, SPF45)	GO:0003676 (nucleic acid binding)
Niben101Scf07449g00006.1	sp|Q8SRB0|GBLP_ENCCU	****	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf11991g00002.1	sp|Q9LVN1|FH13_ARATH	*-*-	Formin-like protein 13	IPR000008 (C2 domain), IPR015425 (Formin, FH2 domain), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0005515 (protein binding)
Niben101Scf08579g01014.1	sp|Q9Y2V7|COG6_HUMAN	****	Conserved oligomeric Golgi complex subunit 6	IPR010490 (Conserved oligomeric Golgi complex subunit 6)	GO:0006891 (intra-Golgi vesicle-mediated transport), GO:0017119 (Golgi transport complex)
Niben101Scf10488g00002.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04053g02002.1	sp|Q9ZQR5|TBL13_ARATH	***-	Protein trichome birefringence-like 13	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf18061g00011.1	ref|XP_002510336.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF52523.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf00797g04001.1			Unknown protein		
Niben101Scf11408g01030.1	sp|B5XWP0|SYY_KLEP3	****	Tyrosine--tRNA ligase	IPR002305 (Aminoacyl-tRNA synthetase, class Ic)	GO:0000166 (nucleotide binding), GO:0003723 (RNA binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004831 (tyrosine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006437 (tyrosyl-tRNA aminoacylation)
Niben101Scf10707g00011.1	gb|ADL36919.1|	*-*-	At1g62390-like protein [Arabidopsis lyrata subsp. lyrata]	IPR000270 (Phox/Bem1p), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf22099g01002.1			Unknown protein		
Niben101Scf04686g02011.1	sp|Q5SPR8|ESCO2_DANRE	*-*-	N-acetyltransferase ESCO2	IPR028005 (N-acetyltransferase ESCO, zinc-finger), IPR028009 (N-acetyltransferase ESCO, acetyl-transferase domain)	
Niben101Scf02825g00021.1	sp|Q9T096|YIPL6_ARATH	***-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf02665g11001.1	AT2G37180.1	*-*-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf10749g01006.1	AT5G28910.2	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=535		
Niben101Scf09317g02003.1	sp|P0C928|RTEL1_DANRE	--*-	Regulator of telomere elongation helicase 1	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf21552g00002.1	sp|Q8S8U1|YCF2B_ATRBE	*-*-	Protein Ycf2 B	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf00229g01002.1	AT5G02230.1	****	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=280	IPR006439 (HAD hydrolase, subfamily IA), IPR010237 (Pyrimidine 5-nucleotidase), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf06338g00001.1	sp|P17736|HIS8_HALVD	*-**	Histidinol-phosphate aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01026g03023.1	sp|E0X9N4|C3H69_ARATH	****	Zinc finger CCCH domain-containing protein 69	IPR000571 (Zinc finger, CCCH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf01008g01010.1	AT1G28340.1	*-*-	receptor like protein 4 LENGTH=626		
Niben101Scf03686g01025.1	gb|AES63190.2|	***-	PHD-finger protein [Medicago truncatula]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01334g06004.1	sp|P0A9P2|DLDH_ECO57	****	Dihydrolipoyl dehydrogenase	IPR006258 (Dihydrolipoamide dehydrogenase), IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR016156 (FAD/NAD-linked reductase, dimerisation domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0004148 (dihydrolipoyl dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016668 (oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01756g02019.1	sp|Q8VYU6|GOGC4_ARATH	***-	Golgin candidate 4		
Niben101Scf07879g00004.1			Unknown protein		
Niben101Scf23825g00005.1	ref|NP_001065441.1|	--*-	[Oryza sativa Japonica Group] dbj|BAF27278.1| [Oryza sativa Japonica Group]	IPR008546 (Domain of unknown function DUF828)	
Niben101Scf04797g00024.1	sp|Q564K3|CND2_ARATH	****	Condensin complex subunit 2	IPR022816 (Condensin complex subunit 2/barren)	GO:0000796 (condensin complex), GO:0007076 (mitotic chromosome condensation)
Niben101Scf20512g00013.1	AT3G06790.1	*-*-	plastid developmental protein DAG, putative LENGTH=244		
Niben101Scf07229g00008.1	sp|Q10G81|MSI1_ORYSJ	****	Histone-binding protein MSI1 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR022052 (Histone-binding protein RBBP4, N-terminal)	GO:0005515 (protein binding)
Niben101Scf02857g01010.1	AT1G30270.1	****	CBL-interacting protein kinase 23 LENGTH=482	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05295g03004.1	ref|NP_001117621.1|	--*-	carbohydrate-binding X8 domain-containing protein [Arabidopsis thaliana] gb|AEE36249.1| carbohydrate-binding X8 domain-containing protein [Arabidopsis thaliana]		
Niben101Scf08690g01008.1	sp|Q93ZR6|WSD1_ARATH	****	O-acyltransferase WSD1	IPR004255 (O-acyltransferase, WSD1, N-terminal), IPR009721 (O-acyltransferase, WSD1, C-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity), GO:0045017 (glycerolipid biosynthetic process)
Niben101Scf20924g01011.1	sp|O23044|PER3_ARATH	****	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08804g02013.1	gb|KEH32260.1|	***-	knotted 1-binding protein [Medicago truncatula]		
Niben101Scf01797g01001.1	sp|P11480|TBAE_PHYPO	***-	Tubulin alpha-2B chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf10712g00017.1	sp|A4FUD4|PEX12_BOVIN	****	Peroxisome assembly protein 12	IPR017375 (Peroxisome assembly protein 12)	GO:0005779 (integral component of peroxisomal membrane), GO:0006625 (protein targeting to peroxisome), GO:0008022 (protein C-terminus binding), GO:0008270 (zinc ion binding)
Niben101Scf00059g04024.1			Unknown protein		
Niben101Ctg15314g00004.1	sp|P46417|GSTX3_SOYBN	***-	Glutathione S-transferase 3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf05250g00005.1			Unknown protein		
Niben101Scf30034g00003.1	sp|P52855|RLA1_MAIZE	*-*-	60S acidic ribosomal protein P1	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf02381g08016.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05827g06020.1	AT3G14270.1	****	phosphatidylinositol-4-phosphate 5-kinase family protein LENGTH=1791	IPR002423 (Chaperonin Cpn60/TCP-1), IPR002498 (Phosphatidylinositol-4-phosphate 5-kinase, core), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027409 (GroEL-like apical domain), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0044267 (cellular protein metabolic process), GO:0046488 (phosphatidylinositol metabolic process), GO:0046872 (metal ion binding)
Niben101Scf08330g01013.1	ref|XP_002532338.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF30040.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03284g05006.1	sp|Q0V7S0|FB39_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf12245g02007.1	ref|XP_007022294.1|	*-*-	S-aden , putative isoform 1 [Theobroma cacao]		
Niben101Scf00268g04013.1			Unknown protein		
Niben101Scf01100g03005.1	sp|B2KI88|SETD3_RHIFE	*-**	Histone-lysine N-methyltransferase setd3	IPR011192 (Rubisco  LSMT methyltransferase, plant)	GO:0005515 (protein binding), GO:0009507 (chloroplast), GO:0030785 ([ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity)
Niben101Scf03064g03003.1	gb|KAK48983.1|	*-*-	aldo/keto reductase [Burkholderia sp. MP-1]	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf01371g03013.1	AT3G56870.1	***-	unknown protein; Has 204 Blast hits to 201 proteins in 58 species: Archae - 0; Bacteria - 10; Metazoa - 72; Fungi - 8; Plants - 41; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). LENGTH=700		
Niben101Scf05582g04008.1			Unknown protein		
Niben101Scf00854g11099.1			Unknown protein		
Niben101Scf06789g03005.1	AT1G67720.1	***-	Leucine-rich repeat protein kinase family protein LENGTH=929	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0005515 (protein binding)
Niben101Scf05474g00018.1	dbj|BAM36190.1|	*-*-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf01464g02007.1	sp|B2TRH8|RSMG_CLOBB	--*-	Ribosomal RNA small subunit methyltransferase G		
Niben101Scf02469g00009.1	sp|Q10D38|MRS2I_ORYSJ	****	Magnesium transporter MRS2-I	IPR026573 (Magnesium transporter MRS2/LPE10)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport)
Niben101Scf38545g00002.1	sp|Q72MG4|IPYR_LEPIC	****	Inorganic pyrophosphatase	IPR008162 (Inorganic pyrophosphatase)	GO:0000287 (magnesium ion binding), GO:0004427 (inorganic diphosphatase activity), GO:0005737 (cytoplasm), GO:0006796 (phosphate-containing compound metabolic process)
Niben101Scf02407g01016.1	sp|Q6IQ97|RBM41_DANRE	*-**	RNA-binding protein 4.1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01571g01008.1	sp|Q9SF33|TI142_ARATH	***-	Mitochondrial import inner membrane translocase subunit TIM14-2	IPR001623 (DnaJ domain)	
Niben101Scf09696g01051.1	ref|XP_003610227.1|	*-*-	Ycf68 [Medicago truncatula]		
Niben101Scf01959g07012.1	sp|Q13823|NOG2_HUMAN	****	Nucleolar GTP-binding protein 2	IPR006073 (GTP binding domain), IPR012971 (Nucleolar GTP-binding protein 2, N-terminal domain), IPR023179 (GTP-binding protein, orthogonal bundle domain), IPR024929 (Nucleolar GTP-binding protein 2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005730 (nucleolus)
Niben101Scf02869g04008.1	sp|Q9C5E5|DGK5_ARATH	****	Diacylglycerol kinase 5	IPR016064 (ATP-NAD kinase-like domain), IPR016961 (Diacylglycerol kinase, plant)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf17500g00001.1	ref|XP_007016926.1|	***-	F2P16.20 protein, putative isoform 1 [Theobroma cacao] gb|EOY34545.1| F2P16.20 protein, putative isoform 1 [Theobroma cacao]	IPR007308 (Protein of unknown function DUF408)	
Niben101Scf06091g05004.1	sp|Q9LN01|PPR21_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR003656 (Zinc finger, BED-type), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding)
Niben101Scf03164g02006.1	ref|WP_024995127.1|	--*-	4-alpha-glucanotransferase [Bacteroides paurosaccharolyticus]		
Niben101Scf17511g01005.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf17661g00002.1	sp|Q9NRR5|UBQL4_HUMAN	*-*-	Ubiquilin-4	IPR015496 (Ubiquilin)	
Niben101Scf01428g01008.1	sp|P0CQ66|RAD5_CRYNJ	****	DNA repair protein RAD5	IPR000330 (SNF2-related), IPR009060 (UBA-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014905 (HIRAN domain), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf12404g00001.1	sp|Q9ZR40|U2A2B_NICPL	*-*-	Splicing factor U2af large subunit B	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf11484g00007.1	sp|Q9F131|3HBH1_PSEAC	***-	3-hydroxybenzoate 6-hydroxylase 1	IPR003042 (Aromatic-ring hydroxylase-like)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01999g02008.1	AT3G56680.1	****	Single-stranded nucleic acid binding R3H protein LENGTH=353	IPR001374 (Single-stranded nucleic acid binding R3H), IPR024771 (SUZ domain)	GO:0003676 (nucleic acid binding)
Niben101Scf03687g00012.1			Unknown protein		
Niben101Scf01991g01018.1			Unknown protein		
Niben101Scf01683g11003.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05433g00001.1	AT2G04410.1	***-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=73	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf02603g01012.1	AT5G60710.1	****	Zinc finger (C3HC4-type RING finger) family protein LENGTH=704	IPR002035 (von Willebrand factor, type A), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07423g04007.1	AT2G47470.1	*-*-	thioredoxin family protein LENGTH=361	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf10268g00007.1	ref|WP_017312960.1|	***-	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 [Fischerella sp. PCC 9339]	IPR008979 (Galactose-binding domain-like), IPR013857 (NADH:ubiquinone oxidoreductase intermediate-associated protein 30), IPR016040 (NAD(P)-binding domain)	
Niben101Scf01243g03015.1	sp|Q8C0R7|ZMY15_MOUSE	***-	Zinc finger MYND domain-containing protein 15	IPR002893 (Zinc finger, MYND-type)	
Niben101Scf00996g02001.1			Unknown protein		
Niben101Scf03049g04017.1	sp|Q54UC9|KIF3_DICDI	*-**	Kinesin-related protein 3	IPR001752 (Kinesin motor domain), IPR024658 (Kinesin-like, KLP2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf08921g01007.1	gb|AHZ20666.1|	--*-	HRc [Brassica napus]	IPR008808 (Powdery mildew resistance protein, RPW8 domain)	
Niben101Scf00163g06010.1	sp|Q9SZL7|FRS9_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 9	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf03538g05013.1	sp|P85191|CP450_HELAN	***-	Cytochrome P450	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02085g03003.1	sp|Q9M331|PTR45_ARATH	***-	Protein NRT1/ PTR FAMILY 5.7	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf03434g02003.1	gb|KEH44096.1|	-**-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf01147g06007.1	emb|CDX97730.1|	***-	BnaA05g23490D [Brassica napus]		
Niben101Scf08921g02022.1	sp|P25802|CYSP1_OSTOS	****	Cathepsin B-like cysteine proteinase 1	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf03455g01026.1	ref|XP_002521341.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF41009.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01460g03007.1			Unknown protein		
Niben101Scf01232g03010.1	AT5G52570.1	***-	beta-carotene hydroxylase 2 LENGTH=303	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03376g02003.1	sp|Q9C7Z9|SCP18_ARATH	****	Serine carboxypeptidase-like 18	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06376g03004.1	sp|Q7WKG2|AQPZ_BORBR	***-	Aquaporin Z	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01209g04001.1	ref|XP_007048513.1|	***-	BTB/POZ domain-containing protein TNFAIP1 isoform 1 [Theobroma cacao] gb|EOX92670.1| BTB/POZ domain-containing protein TNFAIP1 isoform 1 [Theobroma cacao]	IPR022203 (Protein of unknown function DUF3727)	
Niben101Scf03766g15010.1	ref|XP_007031469.1|	***-	Beta-galactosidase 9 isoform 1 [Theobroma cacao] gb|EOY02395.1| Beta-galactosidase 9 isoform 1 [Theobroma cacao]		
Niben101Scf01124g11001.1	AT3G57630.1	***-	exostosin family protein LENGTH=793	IPR000742 (Epidermal growth factor-like domain), IPR004263 (Exostosin-like)	GO:0005515 (protein binding)
Niben101Scf03538g04006.1	sp|Q5ZID2|PDD2L_CHICK	*-*-	Programmed cell death protein 2-like	IPR007320 (Programmed cell death protein 2, C-terminal)	GO:0005737 (cytoplasm)
Niben101Scf10751g00001.1	AT3G01750.1	***-	Ankyrin repeat family protein LENGTH=664	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf03867g00014.1	sp|Q9SSR4|PPR77_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00201g00001.1	sp|Q8L840|RQL4A_ARATH	--*-	ATP-dependent DNA helicase Q-like 4A		
Niben101Scf03170g04002.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13572g00007.1	sp|Q9LFW3|COBL4_ARATH	***-	COBRA-like protein 4	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf00361g04022.1	sp|Q9LN71|RING1_ARATH	--*-	E3 ubiquitin-protein ligase	IPR006845 (Pex, N-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR025654 (Peroxisome biogenesis factor 10)	GO:0005515 (protein binding), GO:0005779 (integral component of peroxisomal membrane), GO:0007031 (peroxisome organization), GO:0008270 (zinc ion binding), GO:0016558 (protein import into peroxisome matrix)
Niben101Scf00952g00004.1	sp|Q29RI6|CAB39_BOVIN	****	Calcium-binding protein 39	IPR013878 (Mo25-like)	GO:0005488 (binding)
Niben101Scf09116g03007.1	sp|Q9SIM4|RL141_ARATH	***-	60S ribosomal protein L14-1	IPR002784 (Ribosomal protein L14), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf37250g00003.1	gb|ACN57982.1|	*-*-	At5g51670-like protein [Capsella grandiflora]	IPR007700 (Protein of unknown function DUF668)	
Niben101Scf03885g08008.1	AT1G35190.1	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=329	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01999g06012.1	sp|B9JZ87|DNAK_AGRVS	*-*-	Chaperone protein DnaK	IPR002523 (Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB), IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00761g06001.1	sp|Q9FZ03|MAN2_SOLLC	***-	Mannan endo-1,4-beta-mannosidase 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00717g02007.1	AT1G10190.1	***-	Protein of Unknown Function (DUF239) LENGTH=396	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf00247g00005.1	AT1G63900.2	****	E3 Ubiquitin ligase family protein LENGTH=347	IPR022170 (Mitochondrial ubiquitin ligase activator of NFKB 1)	GO:0004842 (ubiquitin-protein transferase activity), GO:0007005 (mitochondrion organization)
Niben101Scf05340g00009.1	ref|NP_001048714.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf22060g00010.1	sp|Q43208|H2A4_WHEAT	*-*-	Histone H2A.4	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf04739g00006.1	AT5G55950.1	***-	Nucleotide/sugar transporter family protein LENGTH=398	IPR004853 (Triose-phosphate transporter domain), IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf06467g01001.1			Unknown protein		
Niben101Ctg08577g00001.1	AT3G45640.1	*-**	mitogen-activated protein kinase 3 LENGTH=370	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00887g03011.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11305g01017.1	sp|Q6ZW49|PAXI1_HUMAN	*-*-	PAX-interacting protein 1	IPR001357 (BRCT domain), IPR016181 (Acyl-CoA N-acyltransferase)	
Niben101Scf01640g03002.1	sp|A4JF05|CLPP_BURVG	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01459g00006.1	AT3G45400.1	***-	exostosin family protein LENGTH=475	IPR004263 (Exostosin-like)	
Niben101Scf01205g03008.1	AT1G75620.1	***-	glyoxal oxidase-related protein LENGTH=547	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR014756 (Immunoglobulin E-set), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf00270g17007.1	gb|ABI34346.1|	*-*-	Late blight resistance protein, putative [Solanum demissum]		
Niben101Scf01006g01008.1	sp|Q9QBZ6|GAG_HV1MP	*-*-	Gag polyprotein	IPR001878 (Zinc finger, CCHC-type), IPR009044 (ssDNA-binding transcriptional regulator), IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003713 (transcription coactivator activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf11306g00008.1	sp|A6QPN6|GILT_BOVIN	***-	Gamma-interferon-inducible lysosomal thiol reductase	IPR004911 (Gamma interferon inducible lysosomal thiol reductase GILT)	
Niben101Scf00962g01012.1	AT1G77800.1	*-*-	PHD finger family protein LENGTH=1375		
Niben101Scf16622g01021.1	ref|XP_002521818.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF40628.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf38644g00002.1	sp|Q9M384|SCR_ARATH	*-*-	Protein SCARECROW	IPR005202 (Transcription factor GRAS)	
Niben101Scf08777g03003.1	AT1G15120.2	*-**	Ubiquinol-cytochrome C reductase hinge protein LENGTH=166	IPR003422 (Cytochrome b-c1 complex, subunit 6), IPR023184 (Ubiquinol-cytochrome C reductase hinge domain)	GO:0006122 (mitochondrial electron transport, ubiquinol to cytochrome c), GO:0008121 (ubiquinol-cytochrome-c reductase activity)
Niben101Scf09710g00034.1			Unknown protein		
Niben101Scf01188g08019.1	AT5G12890.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=488	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf08127g03002.1	sp|Q9UBC3|DNM3B_HUMAN	--**	DNA (cytosine-5)-methyltransferase 3B	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006306 (DNA methylation)
Niben101Scf00341g09008.1	AT5G55600.1	***-	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein LENGTH=663	IPR001025 (Bromo adjacent homology (BAH) domain), IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	GO:0003682 (chromatin binding)
Niben101Scf09284g01014.1	AT4G18210.1	***-	purine permease 10 LENGTH=390	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf01062g02005.1	AT4G28088.1	***-	Low temperature and salt responsive protein family LENGTH=77	IPR000612 (Proteolipid membrane potential modulator)	GO:0016021 (integral component of membrane)
Niben101Scf01192g05015.1	sp|Q7F613|SCAM2_ORYSJ	****	Secretory carrier-associated membrane protein 2	IPR007273 (SCAMP)	GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf33454g00007.1	AT3G55440.1	****	triosephosphate isomerase LENGTH=254	IPR000652 (Triosephosphate isomerase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004807 (triose-phosphate isomerase activity), GO:0006096 (glycolytic process), GO:0008152 (metabolic process)
Niben101Scf02301g02002.1			Unknown protein		
Niben101Scf02941g00001.1	sp|Q0A5H0|GCSH_ALKEH	-**-	Glycine cleavage system H protein	IPR002930 (Glycine cleavage system H-protein)	
Niben101Scf19091g00022.1			Unknown protein		
Niben101Scf01922g03012.1	ref|WP_007353692.1|	****	MULTISPECIES: hypothetical protein [Kamptonema] emb|CBN54467.1| conserved membrane hypothetical protein [ [[Oscillatoria] sp. PCC 6506]	IPR001727 (Uncharacterised protein family UPF0016)	GO:0016020 (membrane)
Niben101Scf04283g07026.1	tpg|DAA54610.1|	***-	TPA: hypothetical protein ZEAMMB73_096616 [Zea mays]		
Niben101Scf01380g03001.1	sp|O23237|PER49_ARATH	****	Peroxidase 49	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04827g02009.1	AT5G26800.1	***-	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion;	IPR019083 (IGR protein motif)	
Niben101Scf12469g00012.1	AT4G19670.1	***-	RING/U-box superfamily protein LENGTH=532	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf02658g04009.1	AT2G21210.1	***-	SAUR-like auxin-responsive protein family LENGTH=98	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03108g14001.1	AT5G65550.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=466	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf15993g00013.1	sp|Q9CA64|PRE3_ARATH	***-	Transcription factor PRE3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	
Niben101Scf12443g01008.1	sp|O23708|PSA2A_ARATH	****	Proteasome subunit alpha type-2-A	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf06280g01008.1	gb|ABA99135.2|	***-	seed maturation protein PM23, putative, expressed [Oryza sativa Japonica Group]	IPR008479 (Protein of unknown function DUF760)	
Niben101Scf01435g01002.1	AT1G01110.2	***-	IQ-domain 18 LENGTH=527	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf07645g04008.1			Unknown protein		
Niben101Scf05173g02013.1	AT1G02120.1	*-*-	GRAM domain family protein LENGTH=598	IPR004182 (GRAM domain)	
Niben101Ctg16009g00002.1	AT5G13260.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=537		
Niben101Scf06154g02012.1	sp|P37965|GLPQ_BACSU	****	Glycerophosphoryl diester phosphodiesterase	IPR004129 (Glycerophosphoryl diester phosphodiesterase)	GO:0006071 (glycerol metabolic process), GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity), GO:0008889 (glycerophosphodiester phosphodiesterase activity)
Niben101Scf06976g04005.1	sp|Q9HFF5|PDS5_SCHPO	*-*-	Sister chromatid cohesion protein pds5	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04539g04018.1	sp|P49043|VPE_CITSI	***-	Vacuolar-processing enzyme	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00854g09086.1	sp|Q21YB7|NUOK_RHOFT	--**	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Ctg15504g00002.1	emb|CDY12045.1|	*-*-	BnaAnng02300D [Brassica napus]		
Niben101Scf04220g04011.1	sp|O23044|PER3_ARATH	****	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08478g05002.1	sp|Q9ZTN2|ERD2_PETHY	****	ER lumen protein-retaining receptor	IPR000133 (ER lumen protein retaining receptor)	GO:0006621 (protein retention in ER lumen), GO:0016021 (integral component of membrane), GO:0046923 (ER retention sequence binding)
Niben101Scf00479g00002.1	AT5G53750.1	***-	CBS domain-containing protein LENGTH=408	IPR000644 (CBS domain)	
Niben101Scf05028g00022.1	sp|Q9D0T2|DUS12_MOUSE	*-**	Dual specificity protein phosphatase 12	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf08020g03004.1	sp|Q9ZMH1|CLPB_HELPJ	*-*-	Chaperone protein ClpB	IPR004176 (Clp, N-terminal), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0019538 (protein metabolic process)
Niben101Scf00784g01003.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07044g01004.1	emb|CDY29536.1|	--*-	BnaA03g53810D [Brassica napus]		
Niben101Scf00663g02005.1	sp|Q8BUH8|SENP7_MOUSE	--*-	Sentrin-specific protease 7	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01398g00013.1	AT1G74120.1	*-*-	Mitochondrial transcription termination factor family protein LENGTH=445		
Niben101Scf09672g02005.1	AT1G50490.1	***-	ubiquitin-conjugating enzyme 20 LENGTH=180	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf03019g04002.1	gb|ABF94077.1|	--*-	expressed protein [Oryza sativa Japonica Group]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf02917g00007.1	sp|Q31IS8|ERPA_THICR	*-**	Iron-sulfur cluster insertion protein ErpA	IPR000361 (FeS cluster biogenesis), IPR016092 (FeS cluster insertion protein)	GO:0005198 (structural molecule activity), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf10305g01009.1	sp|Q42134|PSA5B_ARATH	****	Proteasome subunit alpha type-5-B	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf07981g01018.1	sp|P0CQ86|DBP5_CRYNJ	****	ATP-dependent RNA helicase DBP5	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf16278g00003.1	sp|P71016|BETB_BACSU	****	Betaine aldehyde dehydrogenase	IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00482g03010.1	sp|Q9SIB4|WOX3_ARATH	*-*-	WUSCHEL-related homeobox 3	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf14009g00007.1	sp|Q9SI78|PPR93_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Ctg15976g00002.1	sp|Q8CBE3|WDR37_MOUSE	--*-	WD repeat-containing protein 37	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03313g00018.1	emb|CDY50361.1|	***-	BnaA09g13100D [Brassica napus]	IPR022228 (Protein of unknown function DUF3755)	
Niben101Scf04665g02018.1	AT3G57880.1	****	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein LENGTH=773	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf09505g01004.1	sp|Q0H904|XYNC_ASPFU	***-	Endo-1,4-beta-xylanase C	IPR001000 (Glycoside hydrolase, family 10), IPR008979 (Galactose-binding domain-like), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06376g03005.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf13505g01001.1			Unknown protein		
Niben101Scf02361g06005.1	sp|P0C6F3|R1A_BEV	--*-	Replicase polyprotein 1a		
Niben101Ctg12626g00002.1	sp|Q3V096|ANR42_MOUSE	--*-	Ankyrin repeat domain-containing protein 42	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf10708g00001.1	AT3G28740.1	*-*-	Cytochrome P450 superfamily protein LENGTH=509	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg09534g00001.1	sp|Q6AYK2|JMJD6_RAT	*-*-	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6	IPR003347 (JmjC domain)	
Niben101Scf03267g00070.1	ref|YP_009002034.1|	*-*-	orf82 (chloroplast) [Puelia olyriformis] ref|YP_009002056.1| orf82 (chloroplast) [Puelia olyriformis] gb|AGH33814.1| orf82 (chloroplast) [Puelia olyriformis] gb|AGH33836.1| orf82 (chloroplast) [Puelia olyriformis]		
Niben101Scf00257g02025.1	sp|Q84WU2|UBP13_ARATH	*-*-	Ubiquitin carboxyl-terminal hydrolase 13	IPR008974 (TRAF-like)	GO:0005515 (protein binding)
Niben101Scf00715g04003.1	sp|Q9S9N9|CCR1_ARATH	***-	Cinnamoyl-CoA reductase 1	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf09424g06007.1	sp|O33925|SYM_THEMA	*-**	Methionine--tRNA ligase	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0000049 (tRNA binding)
Niben101Scf00546g06004.1	sp|Q7XAD0|HSY1_SOLLC	-**-	Hydroxyproline-rich systemin		
Niben101Ctg14014g00001.1	sp|O23373|FH3_ARATH	*-*-	Formin-like protein 3	IPR015425 (Formin, FH2 domain)	
Niben101Scf07030g00014.1	sp|P93654|SYP22_ARATH	***-	Syntaxin-22	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf36191g00003.1	AT3G45640.1	****	mitogen-activated protein kinase 3 LENGTH=370	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00072g06001.1	sp|O48957|C99A1_SORBI	***-	Cytochrome P450 CYP99A1	IPR001128 (Cytochrome P450)	
Niben101Scf07577g00007.1	sp|Q9SK02|RA51B_ARATH	*-*-	DNA repair protein RAD51 homolog 2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02420g06002.1	sp|Q5GUR8|RHLB_XANOR	*-**	ATP-dependent RNA helicase RhlB	IPR001650 (Helicase, C-terminal), IPR012562 (GUCT), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus)
Niben101Scf00348g11002.1	sp|Q9S7R7|Y3903_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0051260 (protein homooligomerization)
Niben101Scf01271g00003.1	sp|Q06450|ATP5E_IPOBA	****	ATP synthase subunit epsilon, mitochondrial	IPR006721 (ATPase, F1 complex, epsilon  subunit, mitochondrial)	GO:0000275 (mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)), GO:0015986 (ATP synthesis coupled proton transport), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf07788g04003.1	AT5G50180.1	****	Protein kinase superfamily protein LENGTH=346	IPR011009 (Protein kinase-like domain), IPR015784 (Putative serine/threonine-protein kinase, plants)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03481g00013.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02007g08001.1	gb|AES63646.2|	*-*-	transmembrane protein, putative [Medicago truncatula]	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf05246g03010.1	ref|XP_007027038.1|	*-*-	Transducin/WD40 repeat-like superfamily protein, putative [Theobroma cacao] gb|EOY07540.1| Transducin/WD40 repeat-like superfamily protein, putative [Theobroma cacao]		
Niben101Scf00426g01004.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf01109g04006.1	emb|CDX87124.1|	***-	BnaC09g04390D [Brassica napus]	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf03705g01004.1	ref|XP_006368211.1|	*-**	chromodomain-helicase-DNA-binding family protein [Populus trichocarpa] gb|ERP64780.1| chromodomain-helicase-DNA-binding family protein [Populus trichocarpa]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf06171g02014.1	sp|P34064|PSA5_RAT	****	Proteasome subunit alpha type-5	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf00960g15009.1	sp|A0ZZ40|NU3C_GOSBA	*-**	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic	IPR000440 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3), IPR006137 (NADH:ubiquinone oxidoreductase-like, 20kDa subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0051536 (iron-sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07977g03013.1	sp|Q8BYH3|TRM13_MOUSE	****	tRNA:m(4)X modification enzyme TRM13 homolog	IPR007871 (Methyltransferase TRM13), IPR021721 (Zinc finger, CCCH-type, TRM13), IPR022776 (TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain)	GO:0008033 (tRNA processing), GO:0008168 (methyltransferase activity)
Niben101Scf07231g05007.1	dbj|BAH58100.1|	--*-	Dof zinc finger protein [Ipomoea batatas]		
Niben101Scf06005g00022.1	sp|P53756|PDR18_YEAST	*-**	ABC transporter ATP-binding protein/permease PDR18	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf13857g00011.1	sp|A6V0C2|SYL_PSEA7	*-**	Leucine--tRNA ligase	IPR004493 (Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic), IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)	GO:0000166 (nucleotide binding), GO:0002161 (aminoacyl-tRNA editing activity), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004823 (leucine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006429 (leucyl-tRNA aminoacylation)
Niben101Scf06491g00004.1	sp|Q6IP59|CTL2_XENLA	*-*-	Choline transporter-like protein 2	IPR007603 (Choline transporter-like)	
Niben101Scf00712g06006.1	sp|Q9SM57|OEP21_PEA	***-	Outer envelope pore protein 21, chloroplastic		
Niben101Scf03142g01011.1	gb|KEH22373.1|	--*-	DUF4283 domain protein [Medicago truncatula]		
Niben101Scf02946g01002.1			Unknown protein		
Niben101Scf09666g00006.1	gb|AAC49973.1|	--*-	ORF; able to induce HR-like lesions [Nicotiana tabacum]		
Niben101Scf00351g02003.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf09929g01004.1	sp|Q6S5G3|TOC90_ARATH	*-*-	Translocase of chloroplast 90, chloroplastic	IPR024283 (Domain of unknown function DUF3406, chloroplast translocase)	
Niben101Scf00430g01018.1	ref|XP_007019178.1|	***-	Keratinocyte-associated protein 2 isoform 1 [Theobroma cacao] gb|EOY16403.1| Keratinocyte-associated protein 2 isoform 1 [Theobroma cacao]	IPR018614 (Uncharacterised protein family KRTCAP2)	
Niben101Scf02031g08012.1	sp|Q89I84|RECA_BRADU	***-	Protein RecA	IPR013765 (DNA recombination and repair protein RecA), IPR023400 (DNA recombination and repair protein RecA, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003697 (single-stranded DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0006281 (DNA repair), GO:0008094 (DNA-dependent ATPase activity), GO:0009432 (SOS response)
Niben101Scf00687g03008.1	sp|P62980|RS27A_SOLLC	*-*-	Ubiquitin-40S ribosomal protein S27a	IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf26120g00007.1	sp|Q0VCY1|VAPA_BOVIN	*-**	Vesicle-associated membrane protein-associated protein A	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf02366g03011.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021820 (S-locus receptor kinase, C-terminal), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf01053g01013.1	sp|Q84K16|AP1G1_ARATH	*-**	AP-1 complex subunit gamma-1	IPR013041 (Coatomer/clathrin adaptor appendage, Ig-like subdomain)	GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf00428g05021.1	sp|Q97AI2|HELS_THEVO	*-*-	ATP-dependent DNA helicase Hel308	IPR001650 (Helicase, C-terminal), IPR004179 (Sec63 domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf22290g00001.1	gb|AEQ49588.1|	--*-	coat protein [Blueberry red ringspot virus]		
Niben101Scf28250g00015.1	AT1G47480.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=314	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf11723g00007.1			Unknown protein		
Niben101Scf00016g01007.1	sp|Q8VX13|PDI13_ARATH	*-*-	Protein disulfide isomerase-like 1-3	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf01717g00016.1	sp|Q6AXU8|METL6_RAT	***-	Methyltransferase-like protein 6	IPR013217 (Methyltransferase type 12), IPR019410 (Nicotinamide N-methyltransferase-like), IPR026113 (Methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf12427g00007.1	sp|Q42993|CHI1_ORYSJ	*-**	Chitinase 1	IPR000726 (Glycoside hydrolase, family 19, catalytic), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0006032 (chitin catabolic process), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf06898g00001.1	sp|Q43695|TBB3_MAIZE	***-	Tubulin beta-3 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf01266g01008.1	sp|Q6PJP8|DCR1A_HUMAN	*-*-	DNA cross-link repair 1A protein	IPR001279 (Beta-lactamase-like), IPR011084 (DNA repair metallo-beta-lactamase)	
Niben101Scf10466g00002.1	sp|P35286|RAB13_RAT	***-	Ras-related protein Rab-13	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02243g07003.1	sp|Q86IB5|TF2H3_DICDI	*-**	General transcription factor IIH subunit 3	IPR004600 (TFIIH subunit Tfb4/p34)	GO:0000439 (core TFIIH complex), GO:0006289 (nucleotide-excision repair), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg11925g00001.1	sp|B1LME7|FADJ_ECOSM	--*-	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00606g02002.1	sp|Q5XIX0|DJC14_RAT	--*-	DnaJ homolog subfamily C member 14	IPR001623 (DnaJ domain)	
Niben101Scf07087g00007.1	emb|CDY26000.1|	***-	BnaC06g06240D [Brassica napus]	IPR003611 (Nuclease associated modular domain 3)	GO:0003677 (DNA binding)
Niben101Scf00854g11135.1			Unknown protein		
Niben101Scf16234g01014.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf24249g00015.1	sp|Q43867|PME1_ARATH	--**	Pectinesterase 1	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf07498g02004.1	sp|Q5ZJI9|UBAC1_CHICK	--*-	Ubiquitin-associated domain-containing protein 1	IPR006567 (PUG domain), IPR007087 (Zinc finger, C2H2), IPR009060 (UBA-like), IPR018997 (PUB domain)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf09409g01016.1			Unknown protein		
Niben101Scf00625g01003.1			Unknown protein		
Niben101Scf08298g01002.1	AT3G59500.1	***-	Integral membrane HRF1 family protein LENGTH=269	IPR005578 (Hrf1)	
Niben101Scf04223g01043.1	AT4G34940.1	***-	armadillo repeat only 1 LENGTH=664	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf03281g01003.1	AT1G30820.1	****	CTP synthase family protein LENGTH=600	IPR004468 (CTP synthase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003883 (CTP synthase activity), GO:0006221 (pyrimidine nucleotide biosynthetic process)
Niben101Scf21183g00001.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf01657g00002.1	sp|Q9LT79|PUB25_ARATH	***-	U-box domain-containing protein 25	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf18156g00010.1	sp|P0CL18|EIF2D_RABIT	****	Eukaryotic translation initiation factor 2D	IPR001950 (Translation initiation factor SUI1), IPR003121 (SWIB/MDM2 domain), IPR015947 (PUA-like domain)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0006413 (translational initiation)
Niben101Scf00460g04028.1	AT5G06350.1	*-*-	ARM repeat superfamily protein LENGTH=877	IPR024679 (Pre-rRNA-processing protein IPI1/Testis-expressed sequence 10 protein)	
Niben101Scf02857g03005.1	sp|P46300|RS4_SOLTU	***-	40S ribosomal protein S4	IPR000876 (Ribosomal protein S4e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01025g01010.1	sp|Q945M1|NDUB9_ARATH	***-	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	IPR008011 (Complex 1 LYR protein)	
Niben101Scf03694g03003.1	sp|Q8GWJ7|CRK19_ARATH	*-**	Cysteine-rich receptor-like protein kinase 19	IPR002902 (Gnk2-homologous domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04784g03005.1	sp|P46301|RS25_SOLLC	***-	40S ribosomal protein S25	IPR004977 (Ribosomal protein S25), IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf11689g03008.1	AT5G52430.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=438		
Niben101Scf03174g00003.1	sp|P81393|MYB08_ANTMA	***-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03526g00006.1	sp|P43186|BEV1M_BETPN	***-	Major pollen allergen Bet v 1-M/N	IPR000916 (Bet v I domain), IPR023393 (START-like domain), IPR024949 (Bet v I type allergen)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf19309g00001.1	ref|XP_007031469.1|	***-	Beta-galactosidase 9 isoform 1 [Theobroma cacao] gb|EOY02395.1| Beta-galactosidase 9 isoform 1 [Theobroma cacao]		
Niben101Scf08206g02022.1	sp|P93194|RPK1_IPONI	****	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03934g02009.1	AT1G04160.1	****	myosin XI B LENGTH=1500	IPR000048 (IQ motif, EF-hand binding site), IPR002710 (Dilute), IPR004009 (Myosin, N-terminal, SH3-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf02360g03023.1	AT4G00990.1	*-*-	Transcription factor jumonji (jmjC) domain-containing protein LENGTH=840		
Niben101Scf09075g00006.1	sp|Q5RBU7|PCP_PONAB	****	Lysosomal Pro-X carboxypeptidase	IPR008758 (Peptidase S28), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf02081g02004.1			Unknown protein		
Niben101Scf02878g01001.1	gb|ACN57022.1|	*-*-	At1g04650-like protein [Capsella grandiflora]	IPR016024 (Armadillo-type fold), IPR027902 (Protein of unknown function DUF4487)	GO:0005488 (binding)
Niben101Scf00683g02004.1	AT5G55530.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=405	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf07158g00018.1	AT5G67080.1	****	mitogen-activated protein kinase kinase kinase 19 LENGTH=344	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11909g00001.1	ref|XP_007019942.1|	***-	Galact isoform 1 [Theobroma cacao]	IPR008979 (Galactose-binding domain-like), IPR012919 (SUN domain)	
Niben101Scf04772g00008.1	sp|Q70Z18|NAP1B_TOBAC	*-**	Nucleosome assembly protein 1;2	IPR002164 (Nucleosome assembly protein (NAP))	GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf13950g01011.1	AT1G21150.1	****	Mitochondrial transcription termination factor family protein LENGTH=390	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01501g00003.1			Unknown protein		
Niben101Scf03927g03008.1	sp|Q67QB5|SAT_SYMTH	****	Sulfate adenylyltransferase	IPR002650 (Sulphate adenylyltransferase), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR015947 (PUA-like domain)	GO:0000103 (sulfate assimilation), GO:0004781 (sulfate adenylyltransferase (ATP) activity)
Niben101Scf02416g00004.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02707g00001.1	AT3G10130.1	*-*-	SOUL heme-binding family protein LENGTH=309	IPR006917 (SOUL haem-binding protein), IPR011256 (Regulatory factor, effector binding domain)	
Niben101Scf01210g00012.1			Unknown protein		
Niben101Scf01418g00012.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04372g00012.1	AT4G00730.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=802	IPR002913 (START domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008289 (lipid binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02405g02003.1	sp|Q8L7S6|HEXO3_ARATH	****	Beta-hexosaminidase 3	IPR017853 (Glycoside hydrolase superfamily), IPR025705 (Beta-hexosaminidase), IPR029018 (Chitobiase/beta-hexosaminidase domain 2-like)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004563 (beta-N-acetylhexosaminidase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00451g00004.1	gb|AFI44275.1|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Silene vulgaris]		
Niben101Scf17834g01012.1			Unknown protein		
Niben101Scf00705g00002.1	sp|Q8S8M9|ALFL6_ARATH	***-	PHD finger protein ALFIN-LIKE 6	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR021998 (Alfin)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0042393 (histone binding)
Niben101Scf05645g03016.1	sp|P23901|ALDR_HORVU	****	Aldose reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05982g00007.1	sp|Q9M0G7|PXL2_ARATH	*-*-	Leucine-rich repeat receptor-like protein kinase PXL2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf08653g04006.1	sp|C1KWY8|MURG_LISMC	*-**	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	IPR007235 (Glycosyl transferase, family 28, C-terminal)	GO:0005975 (carbohydrate metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups), GO:0030246 (carbohydrate binding), GO:0030259 (lipid glycosylation)
Niben101Scf00853g02012.1	ref|WP_032853289.1|	****	glycosyl hydrolase family 43 [Bacteroides sp. D2]	IPR006710 (Glycoside hydrolase, family 43), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05405g07001.1	gb|KEH37057.1|	*-*-	WPP domain associated protein [Medicago truncatula]		
Niben101Scf00447g00019.1	sp|O82345|BAG6_ARATH	*-**	BAG family molecular chaperone regulator 6	IPR003103 (BAG domain)	GO:0051087 (chaperone binding)
Niben101Scf01383g07005.1	AT3G03740.1	***-	BTB-POZ and MATH domain 4 LENGTH=465	IPR008974 (TRAF-like), IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf06200g01006.1	sp|Q40477|ERF4_TOBAC	****	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05056g01001.1	sp|A2RUW1|TOLIP_RAT	-**-	Toll-interacting protein	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00240g03015.1	sp|Q43867|PME1_ARATH	****	Pectinesterase 1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf06529g06009.1			Unknown protein		
Niben101Scf10429g00009.1	AT1G51560.1	*-*-	Pyridoxamine 5'-phosphate oxidase family protein LENGTH=392		
Niben101Scf09092g02012.1	AT4G09620.1	****	Mitochondrial transcription termination factor family protein LENGTH=212	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07267g02012.1	sp|A4QJM5|PSBB_AETGR	*-**	Photosystem II CP47 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf05304g07001.1	sp|Q9LHJ8|SAP5_ARATH	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	IPR000058 (Zinc finger, AN1-type)	GO:0008270 (zinc ion binding)
Niben101Scf12919g00011.1	AT2G36770.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01635g01006.1	sp|O68185|CLPB_LACLM	*-*-	Chaperone protein ClpB	IPR003959 (ATPase, AAA-type, core), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf12797g00010.1	sp|Q94K00|TBL28_ARATH	***-	Protein trichome birefringence-like 28	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	GO:0050826 (response to freezing)
Niben101Scf11891g01021.1	sp|Q6NKW9|E138_ARATH	***-	Glucan endo-1,3-beta-glucosidase 8	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03439g03004.1	AT3G14940.1	****	phosphoenolpyruvate carboxylase 3 LENGTH=968	IPR021135 (Phosphoenolpyruvate carboxylase)	GO:0003824 (catalytic activity), GO:0006099 (tricarboxylic acid cycle), GO:0008964 (phosphoenolpyruvate carboxylase activity), GO:0015977 (carbon fixation)
Niben101Scf12424g00008.1	sp|A1WX30|DNAJ_HALHL	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf06436g02021.1	sp|Q66HG1|DMTF1_RAT	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03952g00012.1			Unknown protein		
Niben101Scf00597g08013.1	sp|P26791|HSP70_DAUCA	*-*-	Heat shock 70 kDa protein		
Niben101Scf05954g00002.1	emb|CDY20509.1|	*-*-	BnaC04g05350D [Brassica napus]		
Niben101Scf00792g01001.1	sp|Q0IQU1|LAC22_ORYSJ	***-	Laccase-22	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04505g02007.1	sp|Q40477|ERF4_TOBAC	--**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01788g00010.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf10343g01001.1	sp|P78968|PPZ_SCHPO	***-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf08019g00003.1	sp|Q84T94|P2C35_ORYSJ	***-	Protein phosphatase 2C 35	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf01623g10001.1	ref|XP_002515319.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF47303.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01953g01012.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01001g03005.1	sp|Q8AY47|PA2B2_BUNCA	--*-	Basic phospholipase A2 beta-bungarotoxin A2 chain	IPR016090 (Phospholipase A2 domain)	
Niben101Scf01002g11011.1	AT3G14980.1	*-**	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein LENGTH=1189	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008080 (N-acetyltransferase activity), GO:0008270 (zinc ion binding)
Niben101Scf09063g02006.1	sp|Q9LK50|AB26G_ARATH	*-*-	ABC transporter G family member 26		
Niben101Scf05025g07016.1			Unknown protein		
Niben101Scf03070g03006.1	sp|Q9LUQ6|RL192_ARATH	***-	60S ribosomal protein L19-2	IPR000196 (Ribosomal protein L19/L19e domain), IPR023638 (Ribosomal protein L19/L19e conserved site)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf26131g00008.1	gb|KEH24401.1|	*-**	pectinesterase/pectinesterase inhibitor, putative [Medicago truncatula]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf13505g00003.1	AT5G08250.1	*-*-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07793g00002.1	sp|Q10430|SPC25_SCHPO	*-*-	Kinetochore protein spc25	IPR013255 (Chromosome segregation protein Spc25)	
Niben101Scf06068g00006.1	AT5G25590.1	***-	Protein of unknown function (DUF630 and DUF632) LENGTH=775	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf12063g00001.1	sp|P59259|H4_ARATH	***-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly), GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity)
Niben101Scf00119g09004.1	sp|Q9C9A6|PUB10_ARATH	***-	U-box domain-containing protein 10	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf15568g00040.1	AT5G23850.1	***-	Arabidopsis thaliana protein of unknown function (DUF821) LENGTH=542	IPR006598 (Lipopolysaccharide-modifying protein)	
Niben101Scf00780g02003.1	sp|Q8H0U4|TNPO1_ARATH	*-*-	Transportin-1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf19371g00001.1	sp|Q5Z818|SPL12_ORYSJ	****	Squamosa promoter-binding-like protein 12	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf01534g02024.1	sp|Q9ZVJ6|ANXD4_ARATH	***-	Annexin D4	IPR018502 (Annexin repeat)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf06016g02005.1	gb|AGZ19454.1|	*-*-	APOLLO [Boechera sp. IPK 1]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf01478g07014.1	sp|Q68S26|PSBA_PANGI	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf01373g01005.1	sp|Q7XSK0|BGL18_ORYSJ	***-	Beta-glucosidase 18	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02359g00022.1	emb|CDY28215.1|	***-	BnaA01g06340D [Brassica napus]	IPR019460 (Autophagy-related protein 11), IPR029071 (Ubiquitin-related domain)	
Niben101Scf10708g02011.1	AT4G24210.1	***-	F-box family protein LENGTH=151	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02849g01009.1	sp|Q6ID18|LAC10_ARATH	***-	Laccase-10	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05060g08016.1	sp|A8MQA3|PP330_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02864g11009.1	sp|O04887|PME2_CITSI	****	Pectinesterase 2	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf07463g01009.1	sp|Q58881|PURT_METJA	***-	Phosphoribosylglycinamide formyltransferase 2	IPR016185 (Pre-ATP-grasp domain), IPR016301 (Phosphoribosylaminoimidazole carboxylase)	GO:0003824 (catalytic activity), GO:0004638 (phosphoribosylaminoimidazole carboxylase activity), GO:0005524 (ATP binding), GO:0006189 ('de novo' IMP biosynthetic process), GO:0046872 (metal ion binding)
Niben101Scf00751g06010.1			Unknown protein		
Niben101Scf09087g01018.1	sp|Q00030|DUT_EHV4	--*-	Deoxyuridine 5'-triphosphate nucleotidohydrolase		
Niben101Scf09685g00002.1	AT3G50660.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04939g02010.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf09749g02002.1	ref|WP_019264042.1|	--*-	DEAD/DEAH box helicase [Methanobrevibacter smithii]	IPR018973 (DEAD/DEAH-box helicase, putative)	
Niben101Scf16178g00002.1	sp|P0CQ97|SUB2_CRYNB	*-*-	ATP-dependent RNA helicase SUB2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00713g02001.1	emb|CDX79738.1|	*-*-	BnaC03g20740D [Brassica napus]		
Niben101Scf20773g00007.1	tpg|DAA37549.1|	***-	TPA: hypothetical protein ZEAMMB73_065337 [Zea mays]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf04899g00007.1	AT4G04950.1	***-	thioredoxin family protein LENGTH=488	IPR004480 (Monothiol glutaredoxin-related), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf08326g00020.1	AT1G64530.1	*-*-	Plant regulator RWP-RK family protein LENGTH=841	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain), IPR029016 (GAF domain-like)	GO:0005515 (protein binding)
Niben101Scf02653g07002.1	sp|Q9LMF1|U85A3_ARATH	--*-	UDP-glycosyltransferase 85A3		
Niben101Scf02864g11008.1	sp|P53349|M3K1_MOUSE	--**	Mitogen-activated protein kinase kinase kinase 1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf23040g00003.1	ref|XP_002532545.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29839.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11325g00023.1	sp|Q8VWK4|TRB1_ARATH	*-**	Telomere repeat-binding factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00422g01007.1	sp|P46290|RL31_NICGU	***-	60S ribosomal protein L31	IPR000054 (Ribosomal protein L31e), IPR023621 (Ribosomal protein L31e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03189g04010.1			Unknown protein	IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Ctg14760g00004.1	sp|Q89J69|RL11_BRADU	***-	50S ribosomal protein L11	IPR000911 (Ribosomal protein L11/L12)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00270g14005.1	AT1G05510.1	***-	Protein of unknown function (DUF1264) LENGTH=241	IPR010686 (Protein of unknown function DUF1264)	
Niben101Scf08755g02003.1	sp|Q9SW27|MUB3_ARATH	***-	Membrane-anchored ubiquitin-fold protein 3	IPR029071 (Ubiquitin-related domain)	
Niben101Scf00854g01017.1			Unknown protein		
Niben101Scf06902g00012.1	sp|P46070|TF3B_KLULA	--*-	Transcription factor IIIB 70 kDa subunit	IPR011665 (Brf1, TBP-binding domain)	
Niben101Scf07533g03002.1	sp|Q00248|PDI_ASPOR	*-**	Protein disulfide-isomerase	IPR012336 (Thioredoxin-like fold)	GO:0016853 (isomerase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf14650g00004.1	AT5G06900.1	*-*-	cytochrome P450, family 93, subfamily D, polypeptide 1 LENGTH=507	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf17640g00003.1	sp|O49686|PYR1_ARATH	***-	Abscisic acid receptor PYR1	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf02439g00028.1	ref|WP_033141877.1|	*-*-	small multi-drug export protein [Blautia producta]	IPR009577 (Putative small multi-drug export)	
Niben101Scf00428g09009.1	sp|O80337|EF100_ARATH	****	Ethylene-responsive transcription factor 1A	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02537g14001.1	sp|Q96299|14339_ARATH	***-	14-3-3-like protein GF14 mu	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf01940g00012.1	AT3G17850.1	*-**	Protein kinase superfamily protein LENGTH=1296	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf17671g00011.1	ref|XP_007013849.1|	***-	Multipolar spindle 1, putative isoform 1 [Theobroma cacao] gb|EOY31468.1| Multipolar spindle 1, putative isoform 1 [Theobroma cacao]		
Niben101Scf05776g01041.1	sp|Q8HVJ5|NDHI_BAHTO	***-	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic		
Niben101Scf02361g08017.1	AT1G76850.1	****	exocyst complex component sec5 LENGTH=1090	IPR029175 (Exocyst complex component Sec5)	GO:0000145 (exocyst), GO:0006893 (Golgi to plasma membrane transport)
Niben101Scf03964g04025.1	sp|Q91Z38|TTC1_MOUSE	--*-	Tetratricopeptide repeat protein 1	IPR023114 (Elongated TPR repeat-containing domain)	
Niben101Scf31053g00003.1	sp|Q980R2|RPOA1_SULSO	*-**	DNA-directed RNA polymerase subunit A'	IPR015699 (DNA-directed RNA pol I, largest subunit)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf08579g01015.1	AT5G45370.2	*-**	nodulin MtN21 /EamA-like transporter family protein LENGTH=381	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf04375g06003.1	sp|P11435|CPPM_STRHY	*-*-	Carboxyvinyl-carboxyphosphonate phosphorylmutase	IPR015813 (Pyruvate/Phosphoenolpyruvate kinase-like domain)	GO:0003824 (catalytic activity)
Niben101Scf11991g00001.1	sp|Q9LVN0|GPDL7_ARATH	****	Glycerophosphodiester phosphodiesterase GDPDL7	IPR004129 (Glycerophosphoryl diester phosphodiesterase)	GO:0006071 (glycerol metabolic process), GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity), GO:0008889 (glycerophosphodiester phosphodiesterase activity)
Niben101Scf01953g01013.1	sp|O80944|AKRC8_ARATH	-**-	Aldo-keto reductase family 4 member C8	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf21202g00009.1	sp|B9K895|RS17_THENN	*-*-	30S ribosomal protein S17	IPR000266 (Ribosomal protein S17), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05841g00005.1			Unknown protein		
Niben101Scf07042g01020.1	sp|Q70Z19|NAP1A_TOBAC	****	Nucleosome assembly protein 1;1	IPR002164 (Nucleosome assembly protein (NAP))	GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf03064g03002.1			Unknown protein		
Niben101Scf03268g03002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09363g00018.1	sp|Q3AUZ9|CH602_SYNS9	***-	60 kDa chaperonin 2	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding), GO:0042026 (protein refolding), GO:0044267 (cellular protein metabolic process)
Niben101Scf14470g00001.1	sp|Q38857|XTH22_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR008264 (Beta-glucanase), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf02132g00019.1	sp|Q9FM20|PTR54_ARATH	*-*-	Protein NRT1/ PTR FAMILY 4.7	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05959g01004.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01338g04001.1			Unknown protein		
Niben101Scf04477g03011.1	sp|Q1RHI5|ODO2_RICBR	*-**	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex	IPR006255 (Dihydrolipoamide succinyltransferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0004149 (dihydrolipoyllysine-residue succinyltransferase activity), GO:0006099 (tricarboxylic acid cycle), GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups), GO:0045252 (oxoglutarate dehydrogenase complex)
Niben101Scf07942g00005.1	AT5G11040.1	*-*-	TRS120 LENGTH=1186	IPR013935 (TRAPP II complex, Trs120)	
Niben101Scf09589g00009.1	sp|Q8BFQ9|KLH42_MOUSE	*-*-	Kelch-like protein 42	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf02807g03011.1			Unknown protein		
Niben101Scf06933g01002.1	sp|P10691|SUS1_SOLTU	****	Sucrose synthase	IPR012820 (Sucrose synthase, plant/cyanobacteria)	GO:0005985 (sucrose metabolic process), GO:0009058 (biosynthetic process), GO:0016157 (sucrose synthase activity)
Niben101Scf03755g04005.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR001878 (Zinc finger, CCHC-type), IPR004332 (Transposase, MuDR, plant), IPR006564 (Zinc finger, PMZ-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf05929g06012.1	sp|Q9CAN3|SCL28_ARATH	***-	Scarecrow-like protein 28	IPR005202 (Transcription factor GRAS)	
Niben101Scf10743g01008.1	AT1G70170.1	****	matrix metalloproteinase LENGTH=378	IPR021190 (Peptidase M10A), IPR024079 (Metallopeptidase, catalytic domain)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity), GO:0008270 (zinc ion binding), GO:0031012 (extracellular matrix)
Niben101Scf11408g01031.1	AT4G30440.1	****	UDP-D-glucuronate 4-epimerase 1 LENGTH=429	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf09189g01002.1	sp|Q10Q08|RFA1B_ORYSJ	--*-	Replication protein A 70 kDa DNA-binding subunit B	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf14636g02003.1	gb|AAX92873.1|	--*-	transposon protein, putative, mutator sub-class [Oryza sativa Japonica Group]		
Niben101Scf02478g01006.1	sp|Q9SHB5|WRK55_ARATH	****	WRKY transcription factor 55	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02318g01004.1	AT5G53920.1	****	ribosomal protein L11 methyltransferase-related LENGTH=371	IPR010456 (Ribosomal L11 methyltransferase, PrmA), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005737 (cytoplasm), GO:0006479 (protein methylation), GO:0008276 (protein methyltransferase activity)
Niben101Scf03937g02029.1	AT1G71240.1	***-	Plant protein of unknown function (DUF639) LENGTH=824	IPR006927 (Protein of unknown function DUF639)	
Niben101Scf01135g00002.1	gb|AES72482.2|	--*-	histone-lysine N-methyltransferase ATX3 [Medicago truncatula]		
Niben101Scf02612g00003.1	sp|Q7Y1B6|GAI_SOLLC	***-	DELLA protein GAI	IPR005202 (Transcription factor GRAS), IPR021914 (Transcriptional factor DELLA, N-terminal), IPR030006 (Transcriptional factor DELLA)	GO:0000989 (transcription factor binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf09817g01007.1	tpg|DAA54532.1|	***-	TPA: hypothetical protein ZEAMMB73_687144 [Zea mays]		
Niben101Scf03252g03001.1	sp|Q5VRH9|PUB12_ORYSJ	***-	U-box domain-containing protein 12	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf06125g01008.1	AT1G23480.1	***-	cellulose synthase-like A3 LENGTH=556	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf01418g00013.1	ref|NP_568647.1|	****	rib L35 [Arabidopsis thaliana]	IPR021137 (Ribosomal protein L35)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf37563g00006.1	sp|P83332|TLP1_PRUPE	***-	Thaumatin-like protein 1	IPR001938 (Thaumatin)	
Niben101Scf08817g01012.1	sp|Q0WMJ8|SIPL4_ARATH	*-**	Signal peptide peptidase-like 4	IPR003137 (Protease-associated domain, PA), IPR007369 (Peptidase A22B, signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf06954g03022.1	AT5G09830.1	***-	BolA-like family protein LENGTH=93	IPR002634 (BolA protein)	
Niben101Scf03923g06001.1	ref|XP_003590574.1|	*-*-	Zinc finger protein-like protein [Medicago truncatula]		
Niben101Scf01501g00004.1	sp|Q1I7D4|FADB_PSEE4	*-**	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0003857 (3-hydroxyacyl-CoA dehydrogenase activity), GO:0006631 (fatty acid metabolic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01745g07007.1	sp|Q94C77|RPKL_ARATH	*-*-	Receptor protein kinase-like protein	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02543g04011.1	AT3G21690.1	***-	MATE efflux family protein LENGTH=506	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02622g12022.1	ref|XP_002510562.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF52749.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05552g10002.1	sp|Q9M101|CDPKN_ARATH	*-**	Calcium-dependent protein kinase 23	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06280g03011.1	sp|O75629|CREG1_HUMAN	***-	Protein CREG1	IPR012349 (FMN-binding split barrel)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05601g00010.1	AT4G02050.1	****	sugar transporter protein 7 LENGTH=513	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf18639g00027.1	ref|XP_002535202.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF27181.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07247g01002.1	AT5G10270.1	*-**	cyclin-dependent kinase C;1 LENGTH=505	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00163g04005.1	AT1G20930.1	****	cyclin-dependent kinase B2;2 LENGTH=315	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00094g03004.1	AT1G62940.1	***-	acyl-CoA synthetase 5 LENGTH=542	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01451g02006.1	sp|Q9SJ56|BLH1_ARATH	*-*-	BEL1-like homeodomain protein 1		
Niben101Scf08575g01003.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00059g02006.1	AT2G39380.1	*-**	exocyst subunit exo70 family protein H2 LENGTH=637	IPR004140 (Exocyst complex protein Exo70)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf06310g02008.1	sp|O80474|MES4_ARATH	*-*-	Methylesterase 4	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00144g03009.1	sp|Q8L6J4|RPO1A_TOBAC	*-**	DNA-directed RNA polymerase 1A	IPR002092 (DNA-directed RNA polymerase, phage-type)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf10329g03024.1	AT1G67600.1	***-	Acid phosphatase/vanadium-dependent haloperoxidase-related protein LENGTH=163	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase), IPR003832 (Acid phosphatase/vanadium-dependent haloperoxidase-related)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Scf04375g04005.1	sp|Q9VLP7|MET14_DROME	*-**	Methyltransferase-like protein 14 homolog	IPR007757 (MT-A70-like)	GO:0006139 (nucleobase-containing compound metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf21557g00011.1			Unknown protein		
Niben101Scf14831g00001.1	sp|Q81VQ1|ECFA2_BACAN	****	Energy-coupling factor transporter ATP-binding protein EcfA2	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf01888g09008.1	sp|Q8ZSB0|MNTH_NOSS1	****	Divalent metal cation transporter MntH	IPR001046 (NRAMP family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05321g02001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01102g03001.1	sp|Q9SFB8|PI5K6_ARATH	****	Phosphatidylinositol 4-phosphate 5-kinase 6	IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf07004g02016.1	ref|XP_002518781.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF43706.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf03241g00016.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0004842 (ubiquitin-protein transferase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016567 (protein ubiquitination), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf18418g03002.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05824g09014.1	gb|AES86496.2|	*-*-	30S ribosomal protein S15 [Medicago truncatula]		
Niben101Ctg15693g00002.1	sp|Q55DM5|S35B2_DICDI	*-*-	Adenosine 3'-phospho 5'-phosphosulfate transporter 1	IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf05474g00015.1	ref|XP_003626920.1|	--**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf06096g01006.1	AT5G62570.2	***-	Calmodulin binding protein-like LENGTH=494	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf06395g03014.1	gb|ACG44394.1|	*-*-	kinesin-like protein [Zea mays]		
Niben101Scf01849g03012.1	AT1G70320.1	*-**	ubiquitin-protein ligase 2 LENGTH=3658	IPR000569 (HECT), IPR003903 (Ubiquitin interacting motif), IPR009060 (UBA-like), IPR010309 (E3 ubiquitin ligase, domain of unknown function DUF908), IPR016024 (Armadillo-type fold), IPR025527 (Domain of unknown function DUF4414)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00761g06004.1	sp|Q9BXM0|PRAX_HUMAN	--*-	Periaxin		
Niben101Scf06829g03014.1	sp|Q5RAY0|PFD5_PONAB	****	Prefoldin subunit 5	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex), GO:0051082 (unfolded protein binding)
Niben101Scf06553g01004.1			Unknown protein		
Niben101Scf11078g01006.1	sp|Q9M4T8|PSA5_SOYBN	--*-	Proteasome subunit alpha type-5	IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf06939g03003.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf15215g00002.1	sp|Q9VA12|PSA4L_DROME	--*-	Proteasome subunit alpha type-4-like		
Niben101Scf00033g01001.1	sp|Q07UZ4|ATPG_RHOP5	****	ATP synthase gamma chain	IPR000131 (ATPase, F1 complex, gamma subunit), IPR023632 (ATPase, F1 complex, gamma subunit conserved site), IPR023633 (ATPase, F1 complex, gamma subunit domain)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf00543g03008.1	gb|ABF94884.1|	--*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]		
Niben101Scf00560g09009.1			Unknown protein		
Niben101Scf03711g01001.1	sp|P01122|RHO_APLCA	****	Ras-like GTP-binding protein RHO	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf05304g00009.1	sp|P48448|AL3B2_HUMAN	****	Aldehyde dehydrogenase family 3 member B2	IPR012394 (Aldehyde dehydrogenase NAD(P)-dependent), IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0004030 (aldehyde dehydrogenase [NAD(P)+] activity), GO:0006081 (cellular aldehyde metabolic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00280g02010.1	sp|O80641|GASA8_ARATH	***-	Gibberellin-regulated protein 8	IPR003854 (Gibberellin regulated protein)	
Niben101Scf07069g00002.1	sp|O65420|VAL3_ARATH	*-*-	B3 domain-containing transcription factor VAL3		
Niben101Scf01236g00021.1	ref|NP_001044366.2|	*-*-	[Oryza sativa Japonica Group] dbj|BAF06280.2| [Oryza sativa Japonica Group]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf05017g06019.1	sp|Q4V0I4|F16PA_XANC8	****	Fructose-1,6-bisphosphatase class 1	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf00381g09018.1	AT2G17530.1	****	Protein kinase superfamily protein LENGTH=440	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf29144g01002.1	sp|A7M907|ACCD_CUSGR	*-*-	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	IPR001302 (Photosystem I PsaI, reaction centre subunit VIII), IPR029045 (ClpP/crotonase-like domain)	GO:0009522 (photosystem I), GO:0015979 (photosynthesis)
Niben101Scf06050g02001.1	sp|D0LWB8|FTSH_HALO1	--**	ATP-dependent zinc metalloprotease FtsH	IPR000642 (Peptidase M41), IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding)
Niben101Scf04992g01013.1	sp|Q5R5W8|GBB1_PONAB	--**	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	IPR007287 (Sof1-like protein), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01305g04014.1			Unknown protein		
Niben101Scf05713g00004.1	sp|Q9SCV3|BGAL9_ARATH	***-	Beta-galactosidase 9	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf00627g02007.1	sp|Q68EV0|PGAP3_XENLA	***-	Post-GPI attachment to proteins factor 3	IPR007217 (Per1-like)	
Niben101Scf06423g03029.1	sp|O48890|NRPB4_ARATH	*-*-	DNA-directed RNA polymerase II subunit 4	IPR010997 (HRDC-like)	GO:0000166 (nucleotide binding), GO:0003824 (catalytic activity), GO:0044237 (cellular metabolic process)
Niben101Scf01750g07001.1	sp|Q9LT79|PUB25_ARATH	***-	U-box domain-containing protein 25	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf05118g05008.1	sp|P13678|KPC3_DROME	*-**	Protein kinase C	IPR011009 (Protein kinase-like domain), IPR020683 (Ankyrin repeat-containing domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01374g08001.1	gb|AET01485.2|	***-	Avr9/Cf-9 rapidly elicited protein [Medicago truncatula]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf03169g06008.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf13776g02002.1	AT5G40940.1	***-	putative fasciclin-like arabinogalactan protein 20 LENGTH=424	IPR000782 (FAS1 domain)	
Niben101Scf02816g01009.1	AT2G19710.1	*-*-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=937	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf03280g00016.1	AT4G34980.1	****	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf10712g00016.1	sp|O88177|PEX12_RAT	*-**	Peroxisome assembly protein 12	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017375 (Peroxisome assembly protein 12)	GO:0005779 (integral component of peroxisomal membrane), GO:0006625 (protein targeting to peroxisome), GO:0008022 (protein C-terminus binding), GO:0008270 (zinc ion binding)
Niben101Scf01272g01018.1	AT3G19190.1	*-**	autophagy 2 LENGTH=1839	IPR026849 (Autophagy-related protein 2), IPR026854 (Vacuolar protein sorting-associated protein 13A N-terminal domain)	GO:0006914 (autophagy)
Niben101Scf01300g06019.1	AT5G40310.1	*-*-	Exonuclease family protein LENGTH=348		
Niben101Scf00349g06005.1	AT5G10770.1	***-	Eukaryotic aspartyl protease family protein LENGTH=474	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02631g03004.1	AT1G49740.1	***-	PLC-like phosphodiesterases superfamily protein LENGTH=359	IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain)	GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Scf00174g00032.1	sp|Q21NS8|MSBA_SACD2	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf12746g00008.1	sp|Q5ZJF4|PRDX6_CHICK	*-*-	Peroxiredoxin-6	IPR012336 (Thioredoxin-like fold)	GO:0016209 (antioxidant activity), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03510g00004.1	AT4G08685.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=159	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf00367g03018.1	sp|B5WWZ8|FAO1_LOTJA	****	Long-chain-alcohol oxidase FAO1	IPR012400 (Alcohol dehydrogenase, long-chain fatty)	GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0046577 (long-chain-alcohol oxidase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02203g02004.1	AT2G17530.1	****	Protein kinase superfamily protein LENGTH=440	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05226g08016.1	sp|O61068|PFP1_TRIVA	*-**	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase 1	IPR000023 (Phosphofructokinase domain), IPR011183 (Pyrophosphate-dependent phosphofructokinase PfpB)	GO:0003872 (6-phosphofructokinase activity), GO:0005524 (ATP binding), GO:0006096 (glycolytic process), GO:0047334 (diphosphate-fructose-6-phosphate 1-phosphotransferase activity)
Niben101Scf06789g03008.1	emb|CDY27722.1|	***-	BnaA05g31310D [Brassica napus]		
Niben101Scf12801g00001.1	sp|Q54ER7|TCPH_DICDI	*-**	T-complex protein 1 subunit eta	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf13572g00008.1	sp|Q94KT8|COBRA_ARATH	***-	Protein COBRA	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf00072g06002.1	sp|Q9LUE2|TPS18_ARATH	--**	Terpenoid synthase 18	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf00090g04014.1	ref|XP_007017230.1|	***-	Cold regulated gene 27, putative isoform 3 [Theobroma cacao] gb|EOY14455.1| Cold regulated gene 27, putative isoform 3 [Theobroma cacao]		
Niben101Scf07649g01001.1			Unknown protein		
Niben101Scf04610g01029.1	AT1G20960.1	*-*-	U5 small nuclear ribonucleoprotein helicase, putative LENGTH=2171		
Niben101Scf06483g02003.1	gb|KEH37080.1|	*-*-	maternal effect embryo arrest protein [Medicago truncatula]		
Niben101Scf05535g03017.1	AT3G10250.1	***-	Plant protein 1589 of unknown function LENGTH=324	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf01163g04005.1	sp|Q9SRQ7|NPC4_ARATH	***-	Non-specific phospholipase C4	IPR007312 (Phosphoesterase), IPR017850 (Alkaline-phosphatase-like, core domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf03445g04017.1	sp|Q08BY5|JMJD4_DANRE	***-	JmjC domain-containing protein 4	IPR003347 (JmjC domain)	
Niben101Scf02026g02002.1	sp|Q8LCA1|CUT1B_ARATH	***-	Protein CURVATURE THYLAKOID 1B, chloroplastic	IPR025564 (Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain)	
Niben101Scf03390g08004.1			Unknown protein		
Niben101Scf03365g05019.1	gb|ABB47203.2|	*-*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	IPR029472 (Gag-polypeptide of LTR copia-type)	
Niben101Scf02543g00002.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00712g16024.1	sp|Q3AYE2|GLGB_SYNS9	****	1,4-alpha-glucan branching enzyme GlgB	IPR013780 (Glycosyl hydrolase, family 13, all-beta), IPR015902 (Glycoside hydrolase, family 13)	GO:0003824 (catalytic activity), GO:0003844 (1,4-alpha-glucan branching enzyme activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0005978 (glycogen biosynthetic process), GO:0043169 (cation binding)
Niben101Scf06919g00020.1	AT3G25440.1	****	RNA-binding CRS1 / YhbY (CRM) domain protein LENGTH=444	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf05554g07013.1	AT5G40770.1	***-	prohibitin 3 LENGTH=277	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf05399g01004.1	emb|CAE05023.2|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf03444g01010.1	sp|Q9C9A9|COL7_ARATH	*-*-	Zinc finger protein CONSTANS-LIKE 7	IPR010402 (CCT domain)	GO:0005515 (protein binding)
Niben101Scf01521g02015.1	sp|Q8RU27|UPTG2_SOLTU	***-	Alpha-1,4-glucan-protein synthase [UDP-forming] 2	IPR004901 (Reversibly glycosylated polypeptide family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016866 (intramolecular transferase activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf00996g02002.1	gb|AFW71223.1|	*-*-	meiosis 5 [Zea mays]		
Niben101Scf01994g02033.1	sp|Q9LSS5|ICR3_ARATH	***-	Interactor of constitutive active ROPs 3		
Niben101Scf01063g01004.1	emb|CDY16984.1|	*-*-	BnaC09g41110D [Brassica napus]	IPR008545 (WEB family)	
Niben101Scf05306g03009.1	sp|Q8WXF0|SRS12_HUMAN	*-*-	Serine/arginine-rich splicing factor 12	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00777g00004.1	AT2G25625.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=152		
Niben101Scf04134g03012.1			Unknown protein		
Niben101Scf11724g01004.1	sp|P48416|CP10_LYMST	--*-	Cytochrome P450 10		
Niben101Scf03263g04010.1	AT5G43900.3	****	myosin 2 LENGTH=1565	IPR000048 (IQ motif, EF-hand binding site), IPR002710 (Dilute), IPR004009 (Myosin, N-terminal, SH3-like), IPR027401 (Myosin-like IQ motif-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf05915g01010.1	sp|Q9LTV8|PP224_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00286g04019.1	sp|Q55BF2|NMD3_DICDI	***-	60S ribosomal export protein NMD3	IPR007064 (NMD3)	
Niben101Scf01797g03034.1	sp|Q9SUI5|PSAK_ARATH	****	Photosystem I reaction center subunit psaK, chloroplastic	IPR000549 (Photosystem I PsaG/PsaK protein), IPR023618 (Photosystem I PsaG/PsaK domain)	GO:0009522 (photosystem I), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0016168 (chlorophyll binding)
Niben101Scf05717g00007.1	sp|O22607|MSI4_ARATH	*-*-	WD-40 repeat-containing protein MSI4		
Niben101Scf09878g01003.1	sp|Q96512|PER9_ARATH	****	Peroxidase 9	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03419g01010.1	AT4G31590.1	***-	Cellulose-synthase-like C5 LENGTH=692	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf03939g00003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03376g05022.1	ref|XP_003624917.1|	***-	Two-component response regulator ARR1 [Medicago truncatula] gb|ABN09175.1| Homeodomain-related [Medicago truncatula] gb|AES81135.1| MYB-like transcription factor family protein [Medicago truncatula]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06369g02011.1	sp|Q9SWE5|HAL3A_ARATH	***-	Phosphopantothenoylcysteine decarboxylase	IPR003382 (Flavoprotein)	GO:0003824 (catalytic activity)
Niben101Scf01625g01009.1	sp|Q2HJI8|RAB8B_BOVIN	***-	Ras-related protein Rab-8B	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00271g01020.1	sp|Q4UB16|RAB1_THEAN	***-	Ras-related protein Rab-1	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf01239g01010.1	sp|Q5U5C5|PRP31_XENLA	--*-	U4/U6 small nuclear ribonucleoprotein Prp31	IPR002687 (Nop domain), IPR027105 (U4/U6 small nuclear ribonucleoprotein Prp31)	
Niben101Scf05107g02002.1			Unknown protein		
Niben101Scf01763g01009.1	gb|EMT31502.1|	*-*-	Serine/threonine-protein kinase haspin [Aegilops tauschii]	IPR024604 (Domain of unknown function DUF3635)	
Niben101Scf04797g00025.1	sp|Q9FYT6|CRS1_MAIZE	*-*-	Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf01634g03010.1			Unknown protein		
Niben101Scf31931g00001.1	sp|P0CD08|NU2C1_OENBI	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf10152g01008.1	AT5G34930.1	*-*-	arogenate dehydrogenase LENGTH=640	IPR016040 (NAD(P)-binding domain)	
Niben101Scf02093g02008.1	sp|Q9SE97|FH1_ARATH	*-*-	Formin-like protein 1	IPR015425 (Formin, FH2 domain)	
Niben101Scf03842g05002.1	sp|B3PCK0|THIC_CELJU	***-	Phosphomethylpyrimidine synthase	IPR002817 (Thiamine biosynthesis protein ThiC), IPR025747 (ThiC-associated domain)	GO:0009228 (thiamine biosynthetic process), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf04921g00005.1	sp|Q9M9X4|NFYA2_ARATH	****	Nuclear transcription factor Y subunit A-2	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00788g03029.1	sp|Q9LTW9|FLA14_ARATH	*-*-	Fasciclin-like arabinogalactan protein 14	IPR000782 (FAS1 domain)	
Niben101Scf01763g02013.1	ref|XP_007031253.1|	***-	Encodes alpha-helical IF-like protein isoform 1 [Theobroma cacao] gb|EOY11755.1| Encodes alpha-helical IF-like protein isoform 1 [Theobroma cacao]		
Niben101Scf12718g00004.1	sp|Q9LKF9|CPSF2_ARATH	****	Cleavage and polyadenylation specificity factor subunit 2	IPR001279 (Beta-lactamase-like), IPR022712 (Beta-Casp domain), IPR027075 (Cleavage and polyadenylation specificity factor subunit 2)	GO:0005847 (mRNA cleavage and polyadenylation specificity factor complex), GO:0006378 (mRNA polyadenylation), GO:0006379 (mRNA cleavage)
Niben101Scf03867g00011.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01948g01002.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04444g08008.1	sp|Q9T076|ENL2_ARATH	*-*-	Early nodulin-like protein 2	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf00607g03026.1	AT1G68010.2	*-*-	hydroxypyruvate reductase LENGTH=387		
Niben101Scf06826g08001.1	sp|Q9H7D7|WDR26_HUMAN	*-*-	WD repeat-containing protein 26	IPR006594 (LisH dimerisation motif)	GO:0005515 (protein binding)
Niben101Scf13121g00004.1			Unknown protein		
Niben101Scf02074g00022.1	sp|Q7W1I6|GLYA1_BORPA	--*-	Serine hydroxymethyltransferase 1		
Niben101Ctg08818g00002.1	sp|Q9ZSK5|ZOG_PHALU	*-*-	Zeatin O-glucosyltransferase		
Niben101Ctg01885g00002.1	sp|Q7T3I7|RBM38_XENLA	*-**	RNA-binding protein 38	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06009g00033.1	AT5G61280.1	*-*-	Remorin family protein LENGTH=263	IPR005516 (Remorin, C-terminal)	
Niben101Scf22060g00011.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04845g00017.1	ref|WP_024541676.1|	--*-	MULTISPECIES: 16S rRNA pseudouridylate synthase [Ralstonia]		
Niben101Scf10747g00015.1	emb|CDY09808.1|	***-	BnaC09g43530D [Brassica napus]		
Niben101Scf06888g00003.1	AT3G22490.1	***-	Seed maturation protein LENGTH=262	IPR007011 (Seed maturation protein)	
Niben101Scf06123g06003.1	AT2G37195.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=133		
Niben101Scf00602g02003.1	sp|Q9HC62|SENP2_HUMAN	*-*-	Sentrin-specific protease 2	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00894g01019.1	AT5G38690.1	*-*-	Zinc-finger domain of monoamine-oxidase A repressor R1 protein LENGTH=572	IPR018866 (Zinc-finger domain of monoamine-oxidase A repressor R1), IPR028942 (WHIM1 domain)	
Niben101Scf09130g03015.1	AT5G45560.1	****	Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein LENGTH=719	IPR002913 (START domain), IPR009769 (Domain of unknown function DUF1336), IPR011993 (Pleckstrin homology-like domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf03184g02002.1	AT5G50400.1	****	purple acid phosphatase 27 LENGTH=611	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf13640g00004.1			Unknown protein		
Niben101Scf17511g01004.1			Unknown protein		
Niben101Scf04505g05001.1	sp|F1NBT0|STK10_CHICK	*-**	Serine/threonine-protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06424g01007.1	AT1G73260.1	****	kunitz trypsin inhibitor 1 LENGTH=215	IPR002160 (Proteinase inhibitor I3, Kunitz legume)	GO:0004866 (endopeptidase inhibitor activity)
Niben101Scf00584g03035.1	ref|XP_007009131.1|	*-*-	UDP-gluc [Theobroma cacao]		
Niben101Scf08160g02014.1			Unknown protein		
Niben101Scf00449g04001.1	gb|AES78035.2|	***-	DNA-binding protein, putative [Medicago truncatula]		
Niben101Scf02751g00006.1	AT1G22400.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06778g04005.1	sp|Q17CQ8|ZGPAT_AEDAE	*-*-	Zinc finger CCCH-type with G patch domain-containing protein	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf17500g00004.1	gb|KEH27184.1|	***-	Avr9/Cf-9 rapidly elicited protein [Medicago truncatula]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf02816g15003.1	sp|Q9LW84|PP236_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05107g02003.1	AT5G19900.1	*-*-	PRLI-interacting factor, putative LENGTH=494		
Niben101Scf03313g00019.1	ref|XP_002518817.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF43742.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04797g00026.1	ref|NP_001069410.1|	***-	protein CREG1 precursor [Bos taurus] gb|AAI18427.1| Cellular repressor of E1A-stimulated genes 1 [Bos taurus]	IPR012349 (FMN-binding split barrel)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09030g00004.1	AT5G03795.1	***-	Exostosin family protein LENGTH=518	IPR004263 (Exostosin-like)	
Niben101Scf19932g00005.1	sp|Q9LEX0|P2A13_ARATH	***-	F-box protein PP2-A13	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf09217g00023.1	sp|Q8PEX2|TATA_XANAC	--*-	Sec-independent protein translocase protein TatA		
Niben101Scf00089g02001.1	ref|XP_007022165.1|	*-*-	Interactor of constitutive active rops 1 isoform 2 [Theobroma cacao] gb|EOY13690.1| Interactor of constitutive active rops 1 isoform 2 [Theobroma cacao]		
Niben101Scf00324g02036.1	AT4G23930.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=187	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf02549g01001.1	AT2G02050.1	****	NADH-ubiquinone oxidoreductase B18 subunit, putative LENGTH=103	IPR008698 (NADH:ubiquinone oxidoreductase, B18 subunit)	GO:0003954 (NADH dehydrogenase activity), GO:0005739 (mitochondrion), GO:0008137 (NADH dehydrogenase (ubiquinone) activity)
Niben101Scf00059g04022.1			Unknown protein		
Niben101Scf00465g03004.1	sp|Q9LZB2|GDL74_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf04906g00013.1	sp|P42327|ADH2_GEOSE	***-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03853g00002.1	sp|Q9FWX2|NAC7_ARATH	*-*-	NAC domain-containing protein 7	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01188g08018.1	gb|KEH38211.1|	***-	E3 ubiquitin-protein ligase RGLG2-like protein [Medicago truncatula]	IPR002035 (von Willebrand factor, type A), IPR010734 (Copine), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00011g00012.1	emb|CDX97291.1|	*-*-	BnaA02g20820D [Brassica napus]		
Niben101Scf06091g08010.1	sp|Q9SSC9|AHP6_ARATH	***-	Histidine-containing phosphotransfer protein 6	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity)
Niben101Scf00916g01010.1			Unknown protein		
Niben101Scf00501g04001.1	AT1G04430.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=623	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02510g04005.1	sp|Q8VZB9|R10A1_ARATH	****	60S ribosomal protein L10a-1	IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf03600g04025.1	sp|Q9LK24|FB327_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017900 (4Fe-4S ferredoxin, iron-sulphur binding, conserved site)	GO:0005515 (protein binding)
Niben101Scf08127g03001.1	gb|AES94878.2|	--*-	DNA (cytosine-5)-methyltransferase DRM1/2 [Medicago truncatula]		
Niben101Scf03647g01004.1	sp|P14233|TGA1B_TOBAC	*-**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02253g10009.1	emb|CDY45142.1|	***-	BnaA09g14500D [Brassica napus]	IPR007679 (Protein of unknown function DUF569), IPR008999 (Actin cross-linking)	
Niben101Scf19091g00023.1	sp|Q94AI6|SEC6_ARATH	****	Exocyst complex component SEC6	IPR010326 (Exocyst complex component Sec6)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf09360g00019.1	AT1G17580.1	****	myosin 1 LENGTH=1520	IPR000048 (IQ motif, EF-hand binding site), IPR002710 (Dilute), IPR004009 (Myosin, N-terminal, SH3-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf14022g02001.1	sp|Q5VZ89|DEN4C_HUMAN	*-*-	DENN domain-containing protein 4C	IPR001194 (DENN domain), IPR005112 (dDENN domain), IPR005113 (uDENN domain)	
Niben101Scf18696g00009.1	sp|P40972|PLY_TOBAC	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf01763g02015.1	sp|Q58DW6|RAB25_BOVIN	*-*-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf08500g01002.1	AT5G59700.1	*-*-	Protein kinase superfamily protein LENGTH=829		
Niben101Scf00998g02007.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf19230g01022.1	AT5G63390.1	***-	O-fucosyltransferase family protein LENGTH=559	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf01469g06001.1	sp|P34783|G3P_ATRNU	*-*-	Glyceraldehyde-3-phosphate dehydrogenase	IPR001972 (Stomatin family), IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016020 (membrane), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf06005g00021.1	sp|Q9M9E1|AB40G_ARATH	*-*-	ABC transporter G family member 40	IPR013525 (ABC-2 type transporter)	GO:0016020 (membrane)
Niben101Scf00966g02001.1	AT5G39820.1	***-	NAC domain containing protein 94 LENGTH=337	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf12076g00018.1	sp|Q9M1J1|FIS1A_ARATH	****	Mitochondrial fission 1 protein A	IPR016543 (Mitochondria fission 1 protein), IPR028058 (Fis1, N-terminal tetratricopeptide repeat), IPR028061 (Fis1, C-terminal tetratricopeptide repeat)	GO:0000266 (mitochondrial fission), GO:0005515 (protein binding)
Niben101Scf07977g03014.1	sp|Q9LRP7|ATG8I_ARATH	***-	Autophagy-related protein 8i	IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain)	
Niben101Scf10092g00001.1	sp|Q9CAM8|PP100_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01977g01002.1	sp|Q9M158|STR4_ARATH	***-	Rhodanese-like domain-containing protein 4, chloroplastic	IPR001763 (Rhodanese-like domain)	
Niben101Scf03947g00013.1	sp|Q43872|PER64_ARATH	****	Peroxidase 64	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00602g02002.1	sp|Q9P0U3|SENP1_HUMAN	*-*-	Sentrin-specific protease 1	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf07645g04009.1	AT3G10130.1	***-	SOUL heme-binding family protein LENGTH=309	IPR006917 (SOUL haem-binding protein), IPR011256 (Regulatory factor, effector binding domain)	
Niben101Scf00338g10004.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf12443g01007.1	sp|Q9ZUF7|LOR6_ARATH	***-	Protein LURP-one-related 6	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf00682g05009.1	sp|O42993|FKBP_SCHPO	--*-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf07883g03002.1	AT3G58110.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=784		
Niben101Scf04313g01002.1	emb|CDY51950.1|	***-	BnaA08g11680D [Brassica napus]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf06222g00006.1	AT5G02700.1	***-	F-box/RNI-like superfamily protein LENGTH=456		
Niben101Scf13773g00014.1	sp|Q29EY2|S35B3_DROPS	***-	Adenosine 3'-phospho 5'-phosphosulfate transporter 2	IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf04301g00001.1	ref|XP_002524009.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF38377.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06644g00002.1	ref|XP_003609239.1|	****	E3 ubiquitin-protein ligase MARCH3 [Medicago truncatula] gb|AES91436.1| zinc finger protein [Medicago truncatula]	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf01731g05006.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf06042g05002.1			Unknown protein	IPR010666 (Zinc finger, GRF-type)	
Niben101Scf06119g02004.1			Unknown protein		
Niben101Scf04939g02011.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf02381g08014.1	AT4G13070.1	*-**	RNA-binding CRS1 / YhbY (CRM) domain protein LENGTH=343	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf01521g02013.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf00276g02009.1	sp|Q9XJ66|MAD22_ORYSJ	****	MADS-box transcription factor 22	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf02401g02009.1	sp|Q9LV33|BGL44_ARATH	*-*-	Beta-glucosidase 44	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00207g02009.1			Unknown protein		
Niben101Scf00372g03021.1	ref|WP_032853289.1|	****	glycosyl hydrolase family 43 [Bacteroides sp. D2]	IPR006710 (Glycoside hydrolase, family 43), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01041g05001.1	sp|P78968|PPZ_SCHPO	***-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf01434g01018.1	sp|Q9NQW7|XPP1_HUMAN	***-	Xaa-Pro aminopeptidase 1	IPR000994 (Peptidase M24, structural domain), IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	GO:0016787 (hydrolase activity)
Niben101Scf06091g02001.1	sp|Q9NTI5|PDS5B_HUMAN	*-*-	Sister chromatid cohesion protein PDS5 homolog B	IPR007942 (Phospholipase-like)	
Niben101Scf00709g07008.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06583g03009.1	sp|Q7PC88|AB31G_ARATH	***-	ABC transporter G family member 31	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf07981g01017.1	sp|Q9SCP9|VP371_ARATH	***-	Vacuolar protein-sorting-associated protein 37 homolog 1	IPR009851 (Modifier of rudimentary, Modr)	
Niben101Scf39489g00004.1	AT1G53290.1	*-**	Galactosyltransferase family protein LENGTH=345	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf09517g02006.1	sp|O67561|RL15_AQUAE	****	50S ribosomal protein L15	IPR005749 (Ribosomal protein L15, bacterial-type), IPR021131 (Ribosomal protein L18e/L15P)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf10708g00002.1	AT3G28740.1	***-	Cytochrome P450 superfamily protein LENGTH=509	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06771g00004.1	ref|XP_007024096.1|	***-	Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 2 [Theobroma cacao] gb|EOY26718.1| Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 2 [Theobroma cacao]	IPR007650 (Zf-FLZ domain)	
Niben101Scf00530g00003.1	sp|Q96LR5|UB2E2_HUMAN	***-	Ubiquitin-conjugating enzyme E2 E2	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf00109g09011.1	sp|Q9S850|SUOX_ARATH	***-	Sulfite oxidase	IPR008335 (Eukaryotic molybdopterin oxidoreductase), IPR014756 (Immunoglobulin E-set)	GO:0009055 (electron carrier activity), GO:0016491 (oxidoreductase activity), GO:0030151 (molybdenum ion binding), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf16622g01020.1	ref|XP_002521520.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF40791.1| conserved hypothetical protein [Ricinus communis]	IPR019193 (Ubiquitin-conjugating enzyme E2-binding protein)	
Niben101Scf04296g00029.1	sp|A9IIJ2|RNC_BORPD	--**	Ribonuclease 3	IPR000999 (Ribonuclease III domain)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0006396 (RNA processing)
Niben101Scf03141g08007.1	sp|A9VM74|MENE_BACWK	*-*-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01048g00008.1	AT4G37900.1	***-	Protein of unknown function (duplicated DUF1399) LENGTH=787	IPR009836 (Protein of unknown function DUF1399)	
Niben101Scf03174g00002.1	sp|Q9UTM2|CO111_SCHPO	--*-	Rsm22-cox11 tandem protein 1, mitochondrial	IPR015324 (Ribosomal protein Rsm22, bacterial-type)	GO:0006412 (translation), GO:0008168 (methyltransferase activity)
Niben101Scf10222g03003.1	AT5G41390.1	***-	PLAC8 family protein LENGTH=264		
Niben101Scf07030g00013.1	sp|Q2KIN1|DPM2_BOVIN	***-	Dolichol phosphate-mannose biosynthesis regulatory protein	IPR009914 (Dolichol phosphate-mannose biosynthesis regulatory)	GO:0009059 (macromolecule biosynthetic process), GO:0030176 (integral component of endoplasmic reticulum membrane)
Niben101Scf01146g12006.1	AT1G19640.1	****	jasmonic acid carboxyl methyltransferase LENGTH=389	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf09424g06008.1	AT3G56380.1	***-	response regulator 17 LENGTH=153	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf00854g01060.1	sp|Q85IN6|CYB_ICTST	*-*-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal), IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf07061g01024.1	sp|Q54KS4|GNL3_DICDI	*-*-	Guanine nucleotide-binding protein-like 3 homolog	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf06524g02016.1	sp|O82302|P2C29_ARATH	*-*-	Protein phosphatase 2C 29	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf00313g08009.1	AT1G05070.1	***-	Protein of unknown function (DUF1068) LENGTH=184	IPR010471 (Protein of unknown function DUF1068)	
Niben101Scf05678g00002.1	sp|Q9LFT0|TBL19_ARATH	***-	Protein trichome birefringence-like 19	IPR026057 (PC-Esterase)	
Niben101Scf01657g00001.1			Unknown protein		
Niben101Scf03536g02009.1	emb|CAE03561.2|	*-*-	OsJ_16109 [Oryza sativa Japonica Group]		
Niben101Scf18156g00011.1	sp|P31927|SPSA_MAIZE	****	Sucrose-phosphate synthase	IPR012819 (Sucrose phosphate synthase, plant), IPR023214 (HAD-like domain), IPR028098 (Glycosyltransferase subfamily 4, N-terminal domain)	GO:0005985 (sucrose metabolic process), GO:0009058 (biosynthetic process), GO:0046524 (sucrose-phosphate synthase activity)
Niben101Scf11125g00022.1	sp|Q62896|BET1_RAT	***-	BET1 homolog	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf10015g09010.1			Unknown protein		
Niben101Scf04236g00013.1	AT3G14930.1	****	Uroporphyrinogen decarboxylase LENGTH=418	IPR006361 (Uroporphyrinogen decarboxylase HemE)	GO:0004853 (uroporphyrinogen decarboxylase activity), GO:0006779 (porphyrin-containing compound biosynthetic process)
Niben101Scf00355g01029.1			Unknown protein		
Niben101Scf07231g05006.1	AT3G21270.1	*-*-	DOF zinc finger protein 2 LENGTH=204	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05108g04020.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf03481g00012.1	gb|AES67906.2|	--*-	CHUP1, putative [Medicago truncatula]		
Niben101Scf03918g00014.1	sp|Q9FRS4|PPR22_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Ctg16382g00001.1	sp|A1SA30|PSD_SHEAM	****	Phosphatidylserine decarboxylase proenzyme	IPR003817 (Phosphatidylserine decarboxylase-related)	GO:0004609 (phosphatidylserine decarboxylase activity), GO:0008654 (phospholipid biosynthetic process)
Niben101Scf01383g09009.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00451g03011.1	sp|A6TEV5|RS5_KLEP7	*-*-	30S ribosomal protein S5	IPR000851 (Ribosomal protein S5), IPR014720 (Double-stranded RNA-binding domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02763g05015.1	tpg|DAA48790.1|	*-*-	TPA: MTD1 [Zea mays]		
Niben101Scf04173g04002.1			Unknown protein		
Niben101Scf04910g01027.1	sp|Q96SE0|ABHD1_HUMAN	*-*-	Abhydrolase domain-containing protein 1	IPR003675 (CAAX amino terminal protease), IPR029058 (Alpha/Beta hydrolase fold)	GO:0016020 (membrane)
Niben101Scf01435g01003.1	sp|Q5ZI43|SPN1_CHICK	*-*-	Snurportin-1		
Niben101Scf07508g05001.1	sp|Q9C554|EXPA1_ARATH	***-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf00854g09087.1	sp|P09003|MI25_TOBAC	*-**	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf01002g07004.1	sp|Q6DIV4|RBM38_XENTR	*-**	RNA-binding protein 38	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf14144g00014.1	AT5G35170.1	*-**	adenylate kinase family protein LENGTH=588	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004017 (adenylate kinase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0016776 (phosphotransferase activity, phosphate group as acceptor), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf00571g09005.1	AT1G65430.1	***-	IBR domain-containing protein LENGTH=567	IPR001876 (Zinc finger, RanBP2-type), IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf11757g04006.1	AT3G58110.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=784		
Niben101Scf00551g05013.1	sp|P49689|RS30_ARATH	*-*-	40S ribosomal protein S30	IPR006846 (Ribosomal protein S30)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01374g07002.1	sp|Q9SRI1|SC13A_ARATH	*-*-	Protein transport protein SEC13 homolog A	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf20773g01013.1	sp|Q9C5Y4|SMC21_ARATH	***-	Structural maintenance of chromosomes protein 2-1	IPR003395 (RecF/RecN/SMC, N-terminal), IPR010935 (SMCs flexible hinge), IPR024704 (Structural maintenance of chromosomes protein), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000796 (condensin complex), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0007076 (mitotic chromosome condensation), GO:0051276 (chromosome organization)
Niben101Scf03736g02006.1	sp|O49213|FCL1_ARATH	****	GDP-L-fucose synthase 1	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain), IPR028614 (GDP-L-fucose synthase)	GO:0003824 (catalytic activity), GO:0042351 ('de novo' GDP-L-fucose biosynthetic process), GO:0050577 (GDP-L-fucose synthase activity), GO:0050662 (coenzyme binding)
Niben101Scf02142g00002.1	sp|Q99K82|SMOX_MOUSE	***-	Spermine oxidase	IPR002937 (Amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00428g05020.1	AT1G20960.1	*-*-	U5 small nuclear ribonucleoprotein helicase, putative LENGTH=2171	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf02917g00008.1	ref|NP_001189536.1|	--*-	Iron-sulphur cluster bi [Arabidopsis thaliana]		
Niben101Scf03374g07016.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf00132g00004.1	sp|D2NQQ7|FTSH_ROTMD	*-**	ATP-dependent zinc metalloprotease FtsH	IPR000642 (Peptidase M41), IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis)
Niben101Scf37250g00005.1	AT4G17800.1	*-*-	Predicted AT-hook DNA-binding family protein LENGTH=292	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Ctg15726g00001.1	AT1G46264.1	*-**	heat shock transcription factor B4 LENGTH=348	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07087g00006.1	sp|B8DW43|IF2_BIFA0	--*-	Translation initiation factor IF-2		
Niben101Scf01281g08031.1	sp|Q84MA5|CAAT1_ARATH	****	Cationic amino acid transporter 1	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf14115g01029.1	sp|Q9M9M4|CSLD3_ARATH	****	Cellulose synthase-like protein D3	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf01534g04002.1			Unknown protein		
Niben101Scf01721g10005.1			Unknown protein		
Niben101Scf03860g01004.1	sp|P59234|YIPL_SOLTU	***-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf01396g02012.1	sp|Q9M817|PTR6_ARATH	***-	Protein NRT1/ PTR FAMILY 1.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03108g06003.1	AT4G36010.1	*-*-	Pathogenesis-related thaumatin superfamily protein LENGTH=301	IPR001938 (Thaumatin)	
Niben101Scf00535g00008.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR010543 (Domain of unknown function DUF1117), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07287g00010.1	sp|Q8LC79|GAT18_ARATH	****	GATA transcription factor 18	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00121g00025.1	ref|XP_003631077.1|	***-	GPI-anchored protein, putative [Medicago truncatula] gb|ABE80139.1| hypothetical protein MtrDRAFT_AC139526g8v2 [Medicago truncatula] gb|AET05553.1| transmembrane protein, putative [Medicago truncatula]		
Niben101Scf03488g08014.1	AT4G13630.1	*-*-	Protein of unknown function, DUF593 LENGTH=569	IPR007656 (Zein-binding domain)	
Niben101Scf09107g02004.1	gb|AIE43901.1|	*-*-	WRKY transcription factor 67 [Gossypium hirsutum]		
Niben101Scf01353g01007.1	gb|ACN86244.1|	*-*-	[Arabidopsis lyrata subsp. petraea]		
Niben101Scf00792g01002.1	sp|P35286|RAB13_RAT	***-	Ras-related protein Rab-13	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf04339g08005.1	ref|WP_016786451.1|	-**-	Nex18 symbiotically induced protein [Vibrio cyclitrophicus]	IPR000782 (FAS1 domain)	
Niben101Scf00526g00002.1	sp|A7FF20|GCSH_YERP3	****	Glycine cleavage system H protein	IPR002930 (Glycine cleavage system H-protein)	GO:0005960 (glycine cleavage complex), GO:0019464 (glycine decarboxylation via glycine cleavage system)
Niben101Scf04784g03004.1	sp|Q84V03|FB348_ARATH	*-*-	F-box protein		
Niben101Scf03819g03015.1	sp|Q54KZ8|EIF3M_DICDI	****	Eukaryotic translation initiation factor 3 subunit M	IPR000717 (Proteasome component (PCI) domain), IPR027528 (Eukaryotic translation initiation factor 3 subunit M)	GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf03694g03002.1	sp|Q8GYA4|CRK10_ARATH	*-**	Cysteine-rich receptor-like protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03110g00001.1	sp|Q8LFA9|METL2_ARATH	****	Methyltransferase-like protein 2	IPR002052 (DNA methylase, N-6 adenine-specific, conserved site), IPR007757 (MT-A70-like)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf01025g01011.1	sp|Q7J1C4|PSBL_ACOCL	*-**	Photosystem II reaction center protein L	IPR003372 (Photosystem II PsbL)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0015979 (photosynthesis), GO:0016020 (membrane)
Niben101Scf06829g03012.1	sp|Q89VA7|PYRD_BRADU	*-**	Dihydroorotate dehydrogenase (quinone)	IPR012135 (Dihydroorotate dehydrogenase, class 1/ 2), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004152 (dihydroorotate dehydrogenase activity), GO:0006207 ('de novo' pyrimidine nucleobase biosynthetic process), GO:0006222 (UMP biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf02946g01001.1	sp|O82345|BAG6_ARATH	*-**	BAG family molecular chaperone regulator 6	IPR000048 (IQ motif, EF-hand binding site), IPR003103 (BAG domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf00095g08004.1	ref|XP_007049403.1|	***-	Cell wall protein AWA1 isoform 1 [Theobroma cacao] gb|EOX93560.1| Cell wall protein AWA1 isoform 1 [Theobroma cacao]	IPR009060 (UBA-like), IPR009719 (Protein of unknown function DUF1296, plant)	GO:0005515 (protein binding)
Niben101Scf03949g07016.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf10067g00002.1	AT4G34980.1	****	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00226g00002.1	emb|CDX72709.1|	***-	BnaC07g47310D [Brassica napus]		
Niben101Scf10436g03001.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08140g00003.1	sp|P42328|ADH3_GEOSE	*-*-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02360g03024.1	ref|XP_007039056.1|	*-*-	Transcription factor jumonji domain-containing protein, putative isoform 2 [Theobroma cacao] gb|EOY23557.1| Transcription factor jumonji domain-containing protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf09317g00006.1	sp|A4FV54|RAB8A_BOVIN	***-	Ras-related protein Rab-8A	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf05300g02017.1	AT4G39140.1	***-	RING/U-box superfamily protein LENGTH=429	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03138g01006.1	AT2G23930.1	***-	probable small nuclear ribonucleoprotein G LENGTH=80	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf00712g11004.1	sp|Q9C9S4|TPPB_ARATH	*-**	Trehalose-phosphate phosphatase B	IPR003337 (Trehalose-phosphatase), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process)
Niben101Scf06112g02006.1			Unknown protein		
Niben101Scf00451g00005.1			Unknown protein		
Niben101Scf06954g03020.1	sp|Q9SV60|XTH2_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 2	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04372g00013.1	ref|NP_567184.1|	****	type II membrane pectin methyltransferase [Arabidopsis thaliana] RecName: Full=Probable methyltransferase PMT13 [Arabidopsis thaliana] gb|AAL24317.1| Unknown protein [Arabidopsis thaliana] gb|AAL24395.1| Unknown protein [Arabidopsis thaliana] gb|AAN15470.1| Unknown protein [Arabidopsis thaliana] gb|AAP37736.1| [Arabidopsis thaliana] gb|AEE81928.1| type II membrane pectin methyltransferase [Arabidopsis thaliana]	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf03486g01001.1			Unknown protein		
Niben101Scf02034g04014.1	sp|Q9FFF5|ALFL1_ARATH	***-	PHD finger protein ALFIN-LIKE 1	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR021998 (Alfin)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0042393 (histone binding)
Niben101Scf05982g00006.1	AT4G22740.1	*-*-	glycine-rich protein LENGTH=356		
Niben101Scf12825g00004.1	sp|A2YEZ6|SAP8_ORYSI	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	IPR000058 (Zinc finger, AN1-type), IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf07008g00016.1	emb|CDY36540.1|	*-*-	BnaA06g09930D [Brassica napus]		
Niben101Scf04315g01006.1	AT1G12800.1	****	Nucleic acid-binding, OB-fold-like protein LENGTH=767	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding)
Niben101Scf05272g01008.1	sp|O96552|CHMP1_DICDI	***-	Charged multivesicular body protein 1	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf00962g01011.1			Unknown protein		
Niben101Scf06529g06008.1	AT5G24240.1	***-	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein LENGTH=574	IPR000403 (Phosphatidylinositol 3-/4-kinase, catalytic domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf01066g05019.1	sp|O04209|CLC2_ARATH	*-**	Clathrin light chain 2	IPR000996 (Clathrin light chain)	GO:0005198 (structural molecule activity), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030130 (clathrin coat of trans-Golgi network vesicle), GO:0030132 (clathrin coat of coated pit)
Niben101Scf01526g04019.1	ref|XP_002532100.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF30290.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02551g00002.1			Unknown protein		
Niben101Scf06161g00005.1	gb|AET01484.2|	***-	Avr9/Cf-9 rapidly elicited protein [Medicago truncatula]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf02312g03008.1	sp|Q92804|RBP56_HUMAN	*-**	TATA-binding protein-associated factor 2N	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf06809g00016.1	sp|Q5ZML6|F210A_CHICK	--*-	Protein FAM210A	IPR009688 (Domain of unknown function DUF1279)	
Niben101Scf00839g03002.1	emb|CDX99259.1|	***-	BnaC05g33740D [Brassica napus]		
Niben101Scf01722g04010.1	AT3G09670.1	*-*-	Tudor/PWWP/MBT superfamily protein LENGTH=726	IPR000313 (PWWP domain)	
Niben101Scf01788g00011.1	ref|XP_003588898.1|	-**-	F-box/FBD/LRR-repeat protein [Medicago truncatula]	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf21183g00002.1	sp|Q8S8U1|YCF2B_ATRBE	*-*-	Protein Ycf2 B	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03492g02006.1	sp|P69103|GBLP_TRYBB	--**	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf11891g01022.1	sp|Q96JI7|SPTCS_HUMAN	*-*-	Spatacsin	IPR028103 (Spatacsin), IPR028107 (Spatacsin, C-terminal domain)	
Niben101Scf00964g05011.1	sp|Q9SF29|SYP71_ARATH	***-	Syntaxin-71	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf07105g03001.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03281g01002.1			Unknown protein		
Niben101Scf00397g02007.1	sp|A0JP85|CNOT1_XENTR	*-*-	CCR4-NOT transcription complex subunit 1	IPR007196 (CCR4-Not complex component, Not1, C-terminal), IPR024557 (CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819)	
Niben101Scf00861g04006.1	ref|XP_002524097.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF38307.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05440g00006.1	sp|Q7F613|SCAM2_ORYSJ	****	Secretory carrier-associated membrane protein 2	IPR007273 (SCAMP)	GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf20773g00008.1	AT1G21930.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=98		
Niben101Scf01520g01001.1	AT1G03230.1	***-	Eukaryotic aspartyl protease family protein LENGTH=434	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf18125g00008.1	sp|O04375|2A5A_ARATH	*-**	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf00189g00002.1	AT5G40770.1	***-	prohibitin 3 LENGTH=277	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf01017g02002.1	gb|AGI15657.1|	*-*-	collinsiaIX-like protein, partial [Collinsia linearis]	IPR016095 (Ribosomal protein L1, 3-layer alpha/beta-sandwich), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	
Niben101Scf04505g04002.1	ref|XP_002513164.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF49155.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08195g05005.1	sp|B4J6M4|FEN1_DROGR	*-*-	Flap endonuclease 1	IPR006085 (XPG N-terminal), IPR006086 (XPG-I domain), IPR020045 (5'-3' exonuclease, C-terminal domain), IPR029060 (PIN domain-like)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0004518 (nuclease activity), GO:0006281 (DNA repair), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Ctg12623g00003.1	AT2G37710.1	*-**	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf00683g02005.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11235g03002.1	sp|Q84RF2|OPF17_ARATH	*-*-	Transcription repressor OFP17		
Niben101Scf13950g01012.1	AT3G14010.1	***-	CTC-interacting domain 4 LENGTH=595	IPR009604 (LsmAD domain), IPR025852 (Ataxin 2, SM domain)	
Niben101Scf07793g00003.1	sp|Q5SS80|DHR13_MOUSE	****	Dehydrogenase/reductase SDR family member 13	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf04772g00007.1	sp|Q9LVQ5|PP432_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf10468g00010.1	sp|P48368|CRTE_CYAPA	***-	Geranylgeranyl diphosphate synthase	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf03852g03005.1	sp|Q5QM99|RL37A_ORYSJ	***-	60S ribosomal protein L37a	IPR002674 (Ribosomal protein L37ae), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01478g07015.1	ref|XP_007043216.1|	*-**	DNA binding protein, putative isoform 1 [Theobroma cacao] ref|XP_007043217.1| DNA binding protein, putative isoform 1 [Theobroma cacao] ref|XP_007043218.1| DNA binding protein, putative isoform 1 [Theobroma cacao] ref|XP_007043219.1| DNA binding protein, putative isoform 1 [Theobroma cacao] ref|XP_007043220.1| DNA binding protein, putative isoform 1 [Theobroma cacao] ref|XP_007043221.1| DNA binding protein, putative isoform 1 [Theobroma cacao] ref|XP_007043222.1| DNA binding protein, putative isoform 1 [Theobroma cacao] gb|EOX99047.1| DNA binding protein, putative isoform 1 [Theobroma cacao] gb|EOX99048.1| DNA binding protein, putative isoform 1 [Theobroma cacao] gb|EOX99049.1| DNA binding protein, putative isoform 1 [Theobroma cacao] gb|EOX99050.1| DNA binding protein, putative isoform 1 [Theobroma cacao] gb|EOX99051.1| DNA binding protein, putative isoform 1 [Theobroma cacao] gb|EOX99052.1| DNA binding protein, putative isoform 1 [Theobroma cacao] gb|EOX99053.1| DNA binding protein, putative isoform 1 [Theobroma cacao]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01210g00013.1	sp|A3CQM4|RS12_STRSV	*-**	30S ribosomal protein S12	IPR000440 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3), IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0015935 (small ribosomal subunit), GO:0055114 (oxidation-reduction process)
Niben101Scf00663g02006.1	sp|Q9FGK4|B561J_ARATH	*-*-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain)	
Niben101Scf02563g06015.1	AT4G36600.1	***-	Late embryogenesis abundant (LEA) protein LENGTH=353	IPR004238 (Late embryogenesis abundant protein, LEA-3)	
Niben101Scf02658g01005.1	sp|Q41188|CSP2_ARATH	*-*-	Cold shock protein 2	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00705g00003.1	sp|Q9FJY7|PP449_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01338g04002.1	emb|CDY59871.1|	***-	BnaC09g52590D [Brassica napus]	IPR001119 (S-layer homology domain)	
Niben101Scf08579g01016.1	AT4G19185.1	*-**	nodulin MtN21 /EamA-like transporter family protein LENGTH=398	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf09063g02005.1			Unknown protein		
Niben101Scf00278g05002.1	sp|Q9SZR1|ACA10_ARATH	--*-	Calcium-transporting ATPase 10, plasma membrane-type		
Niben101Ctg16335g00001.1	AT4G12490.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=182	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf05060g08015.1	sp|Q9FLJ2|NC100_ARATH	***-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01980g12022.1	gb|KEH18630.1|	--*-	importin-alpha re-exporter, putative [Medicago truncatula]	IPR005043 (CAS/CSE, C-terminal)	GO:0005515 (protein binding)
Niben101Scf10763g00011.1	ref|XP_002527602.1|	*-*-	nucleic acid binding protein, putative [Ricinus communis] gb|EEF34783.1| nucleic acid binding protein, putative [Ricinus communis]		
Niben101Ctg14049g00002.1	sp|P27491|CB27_TOBAC	***-	Chlorophyll a-b binding protein 7, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf07738g00002.1	sp|Q9FZ70|FDL1_ARATH	*-*-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf03278g07001.1	ref|XP_007025422.1|	--*-	3R-hydroxymyristoyl- dehydratase-hydroxymyristoyl ACP dehydrase isoform 4, partial [Theobroma cacao] gb|EOY28044.1| 3R-hydroxymyristoyl- dehydratase-hydroxymyristoyl ACP dehydrase isoform 4, partial [Theobroma cacao]	IPR018316 (Tubulin/FtsZ, 2-layer sandwich domain)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0006184 (GTP catabolic process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf11178g00001.1	sp|Q7MPY0|BIOH_VIBVY	***-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Ctg15315g00004.1	gb|ABA95644.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf19930g01001.1			Unknown protein		
Niben101Scf08030g04002.1			Unknown protein		
Niben101Scf03252g03002.1	sp|A4W8B7|BIOB_ENT38	*-*-	Biotin synthase	IPR010722 (Biotin and thiamin synthesis-associated domain), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf12112g04005.1	gb|AAU95633.1|	***-	R1 [Solanum tuberosum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf05880g03004.1	sp|P48619|FAD3C_RICCO	***-	Omega-3 fatty acid desaturase, chloroplastic	IPR005804 (Fatty acid desaturase, type 1), IPR021863 (Protein of unknown function DUF3474)	GO:0006629 (lipid metabolic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0055114 (oxidation-reduction process)
Niben101Scf02996g03008.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf15394g00006.1	sp|Q3EC97|FBL14_ARATH	***-	F-box/LRR-repeat protein 14	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf00422g01008.1			Unknown protein		
Niben101Scf06842g00001.1	sp|Q9FZ95|PUP3_ARATH	***-	Purine permease 3	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf08755g02002.1	sp|Q3TUH1|TAM41_MOUSE	***-	Phosphatidate cytidylyltransferase, mitochondrial	IPR015222 (Mitochondrial matrix Mmp37)	
Niben101Scf15054g01008.1	sp|Q9LGU6|METK3_ORYSJ	****	S-adenosylmethionine synthase 3	IPR002133 (S-adenosylmethionine synthetase)	GO:0004478 (methionine adenosyltransferase activity), GO:0005524 (ATP binding), GO:0006556 (S-adenosylmethionine biosynthetic process)
Niben101Scf03419g01011.1			Unknown protein		
Niben101Scf00034g01015.1			Unknown protein		
Niben101Scf02543g04010.1	sp|A6L1V8|LEUC_BACV8	*-*-	3-isopropylmalate dehydratase large subunit	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf14650g00005.1	sp|Q8CN53|LRGB_STAES	*-*-	Antiholin-like protein LrgB	IPR007300 (CidB/LrgB family)	
Niben101Scf07541g00018.1	sp|P12786|COX1_PEA	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01556g04023.1	AT1G62400.1	****	Protein kinase superfamily protein LENGTH=345	IPR011009 (Protein kinase-like domain), IPR015783 (Serine/threonine-protein kinase HT1, plant)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06902g00011.1	sp|Q1H3B9|DNAJ_METFK	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf10329g03023.1	sp|Q12873|CHD3_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 3	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding)
Niben101Scf03231g01008.1	AT1G47670.1	***-	Transmembrane amino acid transporter family protein LENGTH=519	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf09878g01002.1	AT5G57960.1	****	GTP-binding protein, HflX LENGTH=540	IPR005225 (Small GTP-binding protein domain), IPR010255 (Haem peroxidase), IPR016496 (GTPase HflX), IPR025121 (GTPase HflX N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004601 (peroxidase activity), GO:0005525 (GTP binding), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11235g03001.1			Unknown protein		
Niben101Scf20493g00017.1	sp|Q9FJD5|LAC17_ARATH	***-	Laccase-17	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00240g03014.1	AT1G53860.1	***-	Remorin family protein LENGTH=442	IPR005516 (Remorin, C-terminal)	
Niben101Scf01745g07008.1	sp|Q5AYW6|DXO_EMENI	***-	Decapping nuclease rai1	IPR013961 (RAI1-like)	
Niben101Scf08006g01023.1	sp|Q9M643|CCI1_ARATH	***-	Cycloeucalenol cycloisomerase		
Niben101Scf20914g00001.1	sp|Q93ZT5|EDL3_ARATH	***-	EID1-like F-box protein 3		
Niben101Scf02239g02006.1	sp|Q10Q08|RFA1B_ORYSJ	--*-	Replication protein A 70 kDa DNA-binding subunit B	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf13392g01003.1	sp|Q9LH31|TPS30_ARATH	*-**	Terpenoid synthase 30	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf07004g02017.1	gb|AAW28576.2|	--*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf04103g04014.1	sp|Q7PP77|EIF3I_ANOGA	***-	Eukaryotic translation initiation factor 3 subunit I	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04375g04006.1	sp|O04153|CALR3_ARATH	*-*-	Calreticulin-3	IPR001580 (Calreticulin/calnexin), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005783 (endoplasmic reticulum), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf21557g00012.1	sp|P15339|DKGB_CORSS	--*-	2,5-diketo-D-gluconic acid reductase B		
Niben101Scf00010g03003.1	gb|EMS68158.1|	*-*-	Glycogenin-1 [Triticum urartu]	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf11663g00005.1	sp|Q1RIC4|CYAY_RICBR	***-	Protein CyaY	IPR002908 (Frataxin/CyaY)	GO:0004322 (ferroxidase activity), GO:0005739 (mitochondrion), GO:0008199 (ferric iron binding), GO:0016226 (iron-sulfur cluster assembly), GO:0055114 (oxidation-reduction process)
Niben101Scf00397g05008.1	ref|XP_007052179.1|	***-	Basic helix-loop-helix DNA-binding superfamily protein isoform 1 [Theobroma cacao] gb|EOX96336.1| Basic helix-loop-helix DNA-binding superfamily protein isoform 1 [Theobroma cacao]		
Niben101Scf03801g06015.1	sp|Q91WK7|ANR54_MOUSE	--*-	Ankyrin repeat domain-containing protein 54	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf01987g00005.1	gb|AES64642.2|	*-*-	F-box protein interaction domain protein [Medicago truncatula]		
Niben101Scf04826g01005.1	sp|O80341|EF102_ARATH	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04477g03010.1	sp|A2Q8F7|PLPL_ASPNC	--*-	Patatin-like phospholipase domain-containing protein		
Niben101Scf00083g04018.1	sp|A7ZK06|YCAR_ECO24	-**-	UPF0434 protein YcaR	IPR005651 (Uncharacterised protein family UPF0434/Trm112)	
Niben101Scf01953g01014.1	AT3G49360.1	*-*-	6-phosphogluconolactonase 2 LENGTH=259	IPR006148 (Glucosamine/galactosamine-6-phosphate isomerase)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf02563g03008.1			Unknown protein		
Niben101Scf01081g00003.1	sp|P42753|CCD31_ARATH	*-*-	Cyclin-D3-1	IPR013763 (Cyclin-like)	
Niben101Scf00597g08015.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf18152g00003.1	sp|O80690|BGL46_ARATH	***-	Beta-glucosidase 46	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Ctg07639g00001.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf03457g01001.1	ref|NP_001053197.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf04926g06015.1	sp|Q91Z38|TTC1_MOUSE	--*-	Tetratricopeptide repeat protein 1	IPR011990 (Tetratricopeptide-like helical domain), IPR023114 (Elongated TPR repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf03755g04004.1	sp|P27061|PPA1_SOLLC	****	Acid phosphatase 1	IPR005519 (Acid phosphatase (Class B))	GO:0003993 (acid phosphatase activity)
Niben101Scf09071g01001.1	sp|Q7XJ98|KATAM_ARATH	***-	Xyloglucan galactosyltransferase KATAMARI1	IPR004263 (Exostosin-like)	
Niben101Scf04331g06010.1	sp|Q9BTT6|LRRC1_HUMAN	*-*-	Leucine-rich repeat-containing protein 1	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02217g02023.1	AT4G32820.2	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=1872		
Niben101Scf01126g00002.1	emb|CDY66906.1|	***-	BnaC05g52250D [Brassica napus]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf01002g11012.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf10556g00024.1	AT5G07020.1	***-	proline-rich family protein LENGTH=235		
Niben101Scf08390g05007.1	sp|Q94758|DYL1_SCHMA	***-	Dynein light chain	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Scf06081g02019.1	sp|Q6C253|ATP23_YARLI	***-	Mitochondrial inner membrane protease ATP23	IPR019165 (Peptidase M76, ATP23)	GO:0004222 (metalloendopeptidase activity)
Niben101Scf02437g02020.1	sp|Q0ID14|RS17_SYNS3	***-	30S ribosomal protein S17	IPR000266 (Ribosomal protein S17), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00327g00011.1	sp|O05927|CYSH_PSEAE	*-*-	Phosphoadenosine phosphosulfate reductase	IPR012336 (Thioredoxin-like fold), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00063g06032.1	sp|Q9LVP9|VTI13_ARATH	****	Vesicle transport v-SNARE 13	IPR007705 (Vesicle transport v-SNARE, N-terminal), IPR010989 (t-SNARE)	GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf05982g00005.1	AT4G22740.1	***-	glycine-rich protein LENGTH=356		
Niben101Scf06748g00004.1	sp|Q5RER9|ZN813_PONAB	--*-	Zinc finger protein 813	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR022755 (Zinc finger, double-stranded RNA binding)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf05251g01004.1	sp|Q9M7X7|RL291_ARATH	*-*-	60S ribosomal protein L29-1	IPR002673 (Ribosomal protein L29e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04899g00008.1	AT1G80270.1	***-	PENTATRICOPEPTIDE REPEAT 596 LENGTH=596	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01137g00002.1	AT1G03050.1	*-*-	ENTH/ANTH/VHS superfamily protein LENGTH=599	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf02314g00008.1	ref|XP_002522942.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF39372.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00448g03004.1	emb|CDY14824.1|	--*-	BnaC04g48210D [Brassica napus]		
Niben101Scf01293g03017.1	sp|Q9M3V8|RS6_ASPOF	***-	40S ribosomal protein S6	IPR001377 (Ribosomal protein S6e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00571g05010.1			Unknown protein		
Niben101Scf07162g00002.1	sp|Q9LSL9|PP445_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07608g01004.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06685g00017.1	sp|O48916|FAH1_ARATH	****	Fatty acid 2-hydroxylase 1	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Ctg16072g00003.1	sp|Q9C7N5|GDL14_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf06578g00005.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR021820 (S-locus receptor kinase, C-terminal), IPR022126 (S-locus, receptor kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf08817g01013.1	emb|CDX95671.1|	*-*-	BnaC03g25520D [Brassica napus]		
Niben101Scf06954g03021.1	emb|CDY56435.1|	***-	BnaC07g49280D [Brassica napus]		
Niben101Scf03018g05015.1	sp|Q94BZ1|ZIFL1_ARATH	***-	Protein ZINC INDUCED FACILITATOR-LIKE 1	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf08921g01005.1	sp|B6J893|SERC_COXB1	--*-	Phosphoserine aminotransferase		
Niben101Scf01418g00014.1	sp|Q9FVQ6|PILR1_ARATH	***-	Pinoresinol reductase 1	IPR016040 (NAD(P)-binding domain)	
Niben101Scf37563g00007.1	sp|P0C1I2|PPIE_RHIO9	*-**	Peptidyl-prolyl cis-trans isomerase E	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf00057g00027.1	sp|P00297|PLAS_SOLCR	***-	Plastocyanin	IPR001235 (Blue (type 1) copper protein, plastocyanin-type), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0005507 (copper ion binding), GO:0009055 (electron carrier activity)
Niben101Scf01210g00056.1	sp|B8IN03|ATPA_METNO	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf02405g02005.1	sp|Q7XUK4|GUN12_ORYSJ	***-	Endoglucanase 12	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00163g04004.1	AT1G20925.1	***-	Auxin efflux carrier family protein LENGTH=472	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf07823g00019.1			Unknown protein		
Niben101Scf00059g02005.1	AT3G09520.1	****	exocyst subunit exo70 family protein H4 LENGTH=628	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf00672g03001.1	AT1G57590.1	***-	Pectinacetylesterase family protein LENGTH=444	IPR004963 (Protein notum homologue)	
Niben101Scf06280g03012.1	sp|Q9FYT6|CRS1_MAIZE	*-*-	Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf11443g01009.1	sp|P46903|NATA_BACSU	*-**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00691g00001.1	sp|P0DI19|PHF5A_ARATH	***-	PHD finger-like domain-containing protein 5A	IPR005345 (PHF5-like)	
Niben101Scf07498g02003.1	sp|F4JUL9|ARPC4_ARATH	****	Actin-related protein 2/3 complex subunit 4	IPR008384 (Actin-related protein 2/3 complex subunit 4)	GO:0005885 (Arp2/3 protein complex), GO:0015629 (actin cytoskeleton), GO:0030041 (actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf03138g01007.1	AT2G18560.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=380	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05552g10003.1	AT5G62140.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 24 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=241		
Niben101Scf00428g09008.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01397g00012.1	sp|A7TKR8|DED1_VANPO	*-**	ATP-dependent RNA helicase DED1	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf04915g05006.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf00539g07022.1	sp|P36126|SPO14_YEAST	*-**	Phospholipase D1	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0004630 (phospholipase D activity), GO:0005509 (calcium ion binding), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0046470 (phosphatidylcholine metabolic process)
Niben101Scf02426g01007.1	AT1G48480.1	****	receptor-like kinase 1 LENGTH=655	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01374g05006.1	AT1G52155.1	***-	unknown protein; Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). LENGTH=319		
Niben101Scf00132g04010.1	AT1G04960.2	***-	Protein of unknown function (DUF1664) LENGTH=334	IPR012458 (Protein of unknown function DUF1664)	
Niben101Scf03107g01009.1	sp|Q9MAU3|TAF6_ARATH	****	Transcription initiation factor TFIID subunit 6	IPR011442 (Domain of unknown function DUF1546)	GO:0005634 (nucleus), GO:0051090 (regulation of sequence-specific DNA binding transcription factor activity)
Niben101Scf02011g08001.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR015757 (Calcineurin B protein)	GO:0005509 (calcium ion binding)
Niben101Scf02011g09001.1	sp|P21873|ODPA_GEOSE	*-*-	Pyruvate dehydrogenase E1 component subunit alpha	IPR001017 (Dehydrogenase, E1 component), IPR029061 (Thiamin diphosphate-binding fold)	GO:0008152 (metabolic process), GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor)
Niben101Scf05776g01042.1	sp|P06265|NU5C_TOBAC	*-**	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic	IPR002128 (NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminal)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf03660g02016.1	emb|CBM56257.1|	*-**	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04639g03001.1	emb|CDX73441.1|	***-	BnaC08g25620D [Brassica napus]		
Niben101Scf03951g02005.1	sp|Q6L545|GID1_ORYSJ	***-	Gibberellin receptor GID1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf04447g01001.1	sp|Q6YSJ5|AGO16_ORYSJ	*-*-	Protein argonaute 16	IPR003100 (PAZ domain), IPR014811 (Domain of unknown function DUF1785)	GO:0005515 (protein binding)
Niben101Scf05824g09015.1	sp|Q5FA41|RS15_NEIG1	--*-	30S ribosomal protein S15	IPR000589 (Ribosomal protein S15)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf15286g00011.1	sp|P54211|PMA1_DUNBI	*-**	Plasma membrane ATPase	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0016021 (integral component of membrane)
Niben101Scf08573g00005.1	AT4G25410.1	****	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=230	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf04788g00021.1	gb|ACU82878.1|	*-**	nucleotide binding site-leucine rich repeat protein, partial [Solanum lycopersicum]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf06976g08005.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf09363g00019.1	sp|Q9T076|ENL2_ARATH	*-*-	Early nodulin-like protein 2	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf03842g07006.1	emb|CDX80332.1|	-**-	BnaC09g34100D [Brassica napus]	IPR021584 (Thylakoid soluble phosphoprotein TSP9)	
Niben101Scf02108g03006.1	ref|WP_026795310.1|	***-	MULTISPECIES: hypothetical protein [Planktothrix]		
Niben101Scf01258g03005.1	sp|Q9M439|BCAT2_ARATH	--*-	Branched-chain-amino-acid aminotransferase 2, chloroplastic		
Niben101Scf02949g01004.1	AT3G26100.2	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=532	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf05959g01005.1	sp|Q96300|14337_ARATH	***-	14-3-3-like protein GF14 nu	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf00961g01024.1	sp|Q93VJ4|BEE2_ARATH	--*-	Transcription factor BEE 2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf06829g03013.1	sp|Q2KJ44|PTPA_BOVIN	****	Serine/threonine-protein phosphatase 2A activator	IPR004327 (Phosphotyrosyl phosphatase activator, PTPA)	GO:0019211 (phosphatase activator activity)
Niben101Scf02837g03005.1	sp|Q54TH4|GET4_DICDI	*-*-	Golgi to ER traffic protein 4 homolog	IPR007317 (Uncharacterised protein family UPF0363)	
Niben101Scf00551g01027.1	sp|P29677|MPPA_SOLTU	****	Mitochondrial-processing peptidase subunit alpha	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0046872 (metal ion binding)
Niben101Scf03952g06015.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02272g01004.1	AT4G09530.1	***-	SAUR-like auxin-responsive protein family LENGTH=103	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01765g02015.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf00160g06018.1	sp|Q9LUD6|PP230_ARATH	*-*-	Pentatricopeptide repeat-containing protein At3g14580, mitochondrial		
Niben101Scf08665g01019.1	sp|P55871|IF2B_MALDO	****	Eukaryotic translation initiation factor 2 subunit beta	IPR002735 (Translation initiation factor IF2/IF5)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf00543g03009.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00138g05004.1	AT5G47750.1	****	D6 protein kinase like 2 LENGTH=586	IPR011009 (Protein kinase-like domain), IPR011993 (Pleckstrin homology-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09017g00004.1	sp|Q80VQ1|LRRC1_MOUSE	*-*-	Leucine-rich repeat-containing protein 1	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf01520g02001.1			Unknown protein		
Niben101Scf07288g06002.1	ref|XP_007040875.1|	*-*-	Decapping 5-like, putative isoform 2 [Theobroma cacao] gb|EOY25376.1| Decapping 5-like, putative isoform 2 [Theobroma cacao]	IPR010920 (Like-Sm (LSM) domain), IPR019050 (FDF domain), IPR025761 (FFD box), IPR025762 (DFDF domain)	
Niben101Scf01409g04017.1	AT3G26040.1	*-**	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf06127g00008.1	gb|ABB83644.1|	--*-	PIF-like transposase [Daucus carota]		
Niben101Scf00446g06008.1			Unknown protein		
Niben101Scf05324g00006.1	gb|AAM96946.1|	*-*-	small heat shock protein [Solanum lycopersicum]		
Niben101Scf02290g09003.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02175g06008.1	AT5G22510.1	***-	alkaline/neutral invertase LENGTH=617	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf03340g06008.1	emb|CDY19083.1|	*-*-	BnaA04g18230D [Brassica napus]		
Niben101Scf02167g00016.1	sp|Q9QXX8|NUFP1_MOUSE	--*-	Nuclear fragile X mental retardation-interacting protein 1	IPR019496 (Nuclear fragile X mental retardation-interacting protein 1, conserved domain)	
Niben101Scf01738g02011.1	AT2G38060.1	***-	phosphate transporter 4;2 LENGTH=512	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf31876g00001.1	prf||2009372A	*-*-	NADH dehydrogenase:SUBUNIT=9		
Niben101Scf06088g00005.1	ref|XP_002525522.1|	*-**	nucleic acid binding protein, putative [Ricinus communis] gb|EEF36880.1| nucleic acid binding protein, putative [Ricinus communis]	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf12932g00011.1	AT1G64230.4	***-	ubiquitin-conjugating enzyme 28 LENGTH=190	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf02069g00015.1	gb|AES92256.2|	--*-	subtilisin-like serine protease [Medicago truncatula]	IPR010259 (Peptidase S8 propeptide/proteinase inhibitor I9)	
Niben101Scf01334g06006.1	sp|Q8L7F9|B3GTF_ARATH	****	Beta-1,3-galactosyltransferase 15	IPR002659 (Glycosyl transferase, family 31), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane), GO:0030246 (carbohydrate binding)
Niben101Scf20773g01014.1	sp|Q8SSK6|ALDR_ENCCU	****	Aldose reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02710g00013.1	gb|KEH43190.1|	***-	insulin-induced protein [Medicago truncatula]	IPR025929 (Insulin-induced protein family)	
Niben101Scf00428g02001.1	sp|Q9FML2|HDA6_ARATH	****	Histone deacetylase 6	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	GO:0004407 (histone deacetylase activity), GO:0016575 (histone deacetylation)
Niben101Scf05158g01004.1	gb|KFV42756.1|	--*-	S-phase kinase-associated protein 2, partial [Gavia stellata]	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05717g00006.1	AT2G37420.1	*-**	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00200g00022.1			Unknown protein		
Niben101Scf00037g02020.1	sp|Q6R2K2|SRF4_ARATH	*-*-	Protein STRUBBELIG-RECEPTOR FAMILY 4	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Scf01061g04013.1	sp|Q6C9R9|SFH5_YARLI	*-*-	Phosphatidylinositol transfer protein SFH5	IPR001251 (CRAL-TRIO domain), IPR009038 (GOLD), IPR011074 (CRAL/TRIO, N-terminal domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf16278g00004.1	sp|Q7JZB4|GMPPB_DROME	***-	Mannose-1-phosphate guanyltransferase beta	IPR011004 (Trimeric LpxA-like), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf00035g01009.1	sp|P53305|RT27_YEAST	-**-	Mitochondrial 37S ribosomal protein S27	IPR013219 (Ribosomal protein S27/S33, mitochondrial)	
Niben101Scf02479g01019.1	sp|O81149|PSA5A_ARATH	****	Proteasome subunit alpha type-5-A	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf03307g08018.1	sp|Q9FJT8|HATB_ARATH	****	Histone acetyltransferase type B catalytic subunit	IPR017380 (Histone acetyltransferase type B, catalytic subunit)	GO:0004402 (histone acetyltransferase activity), GO:0005634 (nucleus), GO:0006348 (chromatin silencing at telomere), GO:0016568 (chromatin modification), GO:0016573 (histone acetylation)
Niben101Scf02414g02002.1	sp|E2RQ15|RAB25_CANFA	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf12718g00003.1	sp|Q9LKF9|CPSF2_ARATH	*-**	Cleavage and polyadenylation specificity factor subunit 2	IPR015300 (DNA-binding pseudobarrel domain), IPR025069 (Cleavage and polyadenylation specificity factor 2, C-terminal), IPR027075 (Cleavage and polyadenylation specificity factor subunit 2)	GO:0005847 (mRNA cleavage and polyadenylation specificity factor complex), GO:0006378 (mRNA polyadenylation), GO:0006379 (mRNA cleavage)
Niben101Scf25674g00008.1	gb|KFB84052.1|	***-	alpha/beta hydrolase [Calothrix sp. 336/3]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01061g03009.1	AT2G34680.1	***-	Outer arm dynein light chain 1 protein LENGTH=1708	IPR001611 (Leucine-rich repeat), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf10524g02010.1	AT3G16560.1	***-	Protein phosphatase 2C family protein LENGTH=493	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf00313g08008.1	ref|NP_567615.1|	--*-	dentin sialoph [Arabidopsis thaliana]		
Niben101Scf03064g00009.1	sp|A4QNC6|F136A_XENTR	***-	Protein FAM136A	IPR008560 (Protein of unknown function DUF842, eukaryotic)	
Niben101Scf01394g00001.1			Unknown protein		
Niben101Scf00367g03017.1	AT4G14310.2	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=920	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf07488g00010.1	sp|Q3UHJ8|RNF44_MOUSE	--*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf21560g01010.1	sp|Q01545|HSP22_IPONI	***-	18.8 kDa class II heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf03241g00015.1	sp|Q9LSM5|SGT1_ARATH	***-	Protein SGT1 homolog	IPR010770 (SGT1)	
Niben101Scf13121g00003.1			Unknown protein		
Niben101Scf00294g03009.1	AT5G02810.1	***-	pseudo-response regulator 7 LENGTH=727	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf04329g00006.1	emb|CDY60165.1|	***-	BnaAnng16590D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf01959g07014.1			Unknown protein		
Niben101Scf03365g05018.1	emb|CDY13133.1|	*-*-	BnaA09g16840D [Brassica napus]		
Niben101Scf01607g06003.1	sp|Q41060|SBP65_PEA	*-*-	Seed biotin-containing protein SBP65		
Niben101Scf04610g01028.1	AT1G20960.1	*-*-	U5 small nuclear ribonucleoprotein helicase, putative LENGTH=2171	IPR011545 (DEAD/DEAH box helicase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf03445g04016.1	sp|Q8SQK0|PRS8_ENCCU	*-*-	26S protease regulatory subunit 8 homolog	IPR003959 (ATPase, AAA-type, core), IPR005938 (AAA ATPase, CDC48 family), IPR009010 (Aspartate decarboxylase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029067 (CDC48 domain 2-like)	GO:0005524 (ATP binding), GO:0016787 (hydrolase activity)
Niben101Scf02562g01010.1	AT5G48930.1	****	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase LENGTH=433	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf11813g01018.1	AT5G01840.1	*-*-	ovate family protein 1 LENGTH=270	IPR006458 (Ovate  protein family, C-terminal), IPR025830 (DNA-binding domain, ovate family-like)	GO:0003677 (DNA binding)
Niben101Scf02211g02012.1	sp|Q38944|DET2_ARATH	--**	Steroid 5-alpha-reductase DET2	IPR010721 (Protein of unknown function DUF1295)	GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
Niben101Scf13640g00003.1	ref|WP_000465760.1|	*-*-	ATP-binding protein [Bacillus cereus]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03403g01035.1	sp|Q9FIE3|VIN3_ARATH	***-	Protein VERNALIZATION INSENSITIVE 3	IPR013783 (Immunoglobulin-like fold)	GO:0005515 (protein binding)
Niben101Scf05399g01003.1	emb|CDY27599.1|	***-	BnaA09g28080D [Brassica napus]		
Niben101Scf00482g07005.1	ref|XP_002530241.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF32147.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06556g09001.1	AT3G06840.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=187		
Niben101Ctg09684g00002.1	sp|P24792|ASO_CUCMA	*-*-	L-ascorbate oxidase	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding)
Niben101Scf07423g04005.1	sp|Q9ZUU9|AB3G_ARATH	*-*-	ABC transporter G family member 3	IPR013525 (ABC-2 type transporter)	GO:0016020 (membrane)
Niben101Scf04703g06005.1	sp|Q1JPL7|PME18_ARATH	****	Pectinesterase/pectinesterase inhibitor 18	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf04787g02015.1			Unknown protein		
Niben101Scf00254g08008.1	sp|Q38861|XPB1_ARATH	****	DNA repair helicase XPB1	IPR001161 (Helicase Ercc3), IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0004003 (ATP-dependent DNA helicase activity), GO:0005524 (ATP binding), GO:0006289 (nucleotide-excision repair), GO:0016787 (hydrolase activity)
Niben101Scf03438g02001.1	sp|O22230|HSFB3_ARATH	****	Heat stress transcription factor B-3	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01684g02006.1	sp|B5R8D1|CMOB_SALG2	--**	tRNA (mo5U34)-methyltransferase	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf00854g04122.1	sp|Q4KJA1|THIC_PSEF5	--*-	Phosphomethylpyrimidine synthase		
Niben101Scf08531g00006.1			Unknown protein		
Niben101Scf01142g02005.1	sp|F4J5S1|CLU_ARATH	*-*-	Clustered mitochondria protein	IPR011990 (Tetratricopeptide-like helical domain), IPR028275 (Clustered mitochondria protein, N-terminal)	GO:0005515 (protein binding)
Niben101Scf06042g05003.1	gb|KEH37527.1|	***-	EEIG1/EHBP1 protein amino-terminal domain protein [Medicago truncatula]	IPR018392 (LysM domain), IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf02929g06004.1	emb|CDY45483.1|	--*-	BnaCnng12420D [Brassica napus]		
Niben101Scf03376g05023.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR000985 (Legume lectin, alpha chain, conserved site), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf15326g00005.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015916 (Galactose oxidase, beta-propeller), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf02537g14002.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf09977g00011.1	gb|AIU51078.1|	***-	AT4G29520-like protein, partial [Solanum tuberosum]	IPR021852 (Domain of unknown function DUF3456)	
Niben101Scf03766g15012.1			Unknown protein		
Niben101Scf01797g03033.1	gb|KEH36694.1|	***-	F-box/LRR protein [Medicago truncatula]		
Niben101Ctg01500g00001.1	sp|Q4V7Z0|GPN3_XENLA	*-*-	GPN-loop GTPase 3	IPR004130 (GPN-loop GTPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03978g07013.1	AT5G17020.1	***-	exportin 1A LENGTH=1075	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf00425g03023.1	sp|Q67JH0|FTSH3_SYMTH	*-**	ATP-dependent zinc metalloprotease FtsH 3	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf08921g02020.1	sp|P25802|CYSP1_OSTOS	*-**	Cathepsin B-like cysteine proteinase 1	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf02353g06005.1	ref|XP_007014334.1|	*-*-	S-aden isoform 1 [Theobroma cacao]		
Niben101Scf02658g04007.1	gb|AES97132.2|	--*-	DUF223 domain protein [Medicago truncatula]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf12581g00002.1	AT4G02050.1	****	sugar transporter protein 7 LENGTH=513	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04436g03001.1	sp|P49199|RS8_ORYSJ	***-	40S ribosomal protein S8	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00273g08007.1			Unknown protein		
Niben101Scf06950g00004.1	AT2G46090.1	****	Diacylglycerol kinase family protein LENGTH=364	IPR005218 (Diacylglycerol/lipid kinase), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf02357g02002.1	sp|Q9LN01|PPR21_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01948g01001.1	gb|ADN32810.1|	***-	sieve element occlusion a [Solanum phureja]	IPR027942 (Sieve element occlusion, N-terminal), IPR027944 (Sieve element occlusion, C-terminal)	
Niben101Scf10363g01002.1	sp|Q7Q732|DHRS7_ANOGA	*-**	Dehydrogenase/reductase SDR family protein 7-like	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf00779g08011.1	sp|P69103|GBLP_TRYBB	*-**	Guanine nucleotide-binding protein subunit beta-like protein	IPR006594 (LisH dimerisation motif), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02093g02009.1	sp|Q9R0X4|ACOT9_MOUSE	***-	Acyl-coenzyme A thioesterase 9, mitochondrial	IPR029069 (HotDog domain)	
Niben101Scf04921g00004.1	sp|Q9FXA2|PABP8_ARATH	*-**	Polyadenylate-binding protein 8	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01999g06014.1	sp|Q9ZQR4|Y2452_ARATH	***-	DUF21 domain-containing protein	IPR000644 (CBS domain), IPR002550 (Domain of unknown function DUF21)	
Niben101Scf02043g07006.1	sp|Q9ZPR0|COQ4_ARATH	****	Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial	IPR007715 (Ubiquinone biosynthesis protein Coq4)	GO:0005743 (mitochondrial inner membrane), GO:0006744 (ubiquinone biosynthetic process)
Niben101Scf01033g04010.1	emb|CDY28836.1|	***-	BnaC06g26240D [Brassica napus]		
Niben101Scf07323g02024.1	sp|P29387|GBB4_MOUSE	--**	Guanine nucleotide-binding protein subunit beta-4	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf08684g03007.1	sp|Q6NRL1|AGAP1_XENLA	*-**	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf01054g09009.1	sp|Q943Q3|HS166_ORYSJ	--*-	16.6 kDa heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf01001g04001.1	sp|O81020|NPC2_ARATH	***-	Non-specific phospholipase C2	IPR007312 (Phosphoesterase), IPR017850 (Alkaline-phosphatase-like, core domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02291g02001.1	emb|CDX77557.1|	***-	BnaA07g06950D [Brassica napus]		
Niben101Ctg03042g00002.1	AT1G68940.3	*-*-	Armadillo/beta-catenin-like repeat family protein LENGTH=1061	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf10509g02003.1	sp|Q6TXF5|LRC66_RAT	*-*-	Leucine-rich repeat-containing protein 66	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf06277g04008.1	sp|C7R101|MSHA_JONDD	***-	D-inositol 3-phosphate glycosyltransferase	IPR001296 (Glycosyl transferase, family 1), IPR028098 (Glycosyltransferase subfamily 4, N-terminal domain)	GO:0009058 (biosynthetic process)
Niben101Scf04205g00001.1	sp|Q5BJ92|PP4C_RAT	*-*-	Serine/threonine-protein phosphatase 4 catalytic subunit	IPR029052 (Metallo-dependent phosphatase-like)	
Niben101Scf05314g01012.1	emb|CAA79676.1|	***-	beta-fructofuranosidase [Solanum tuberosum]	IPR001362 (Glycoside hydrolase, family 32), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02357g06007.1	sp|Q1HG60|PIF1_RAT	*-*-	ATP-dependent DNA helicase PIF1		
Niben101Scf11305g01015.1	sp|Q1WT18|RUVB_LACS1	--*-	Holliday junction ATP-dependent DNA helicase RuvB		
Niben101Scf03778g01011.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07778g01025.1	ref|XP_007035917.1|	*-*-	Calcium-dependent lipid-binding family protein isoform 4 [Theobroma cacao] gb|EOY06843.1| Calcium-dependent lipid-binding family protein isoform 4 [Theobroma cacao]	IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf02393g02001.1	ref|WP_028877176.1|	*-*-	peptidase S9 [Teredinibacter turnerae]		
Niben101Scf05519g01007.1	sp|Q9ZVD5|AGO4_ARATH	***-	Protein argonaute 4	IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf02460g02013.1			Unknown protein		
Niben101Scf01002g01001.1	AT3G58120.1	***-	Basic-leucine zipper (bZIP) transcription factor family protein LENGTH=329		
Niben101Scf02751g00005.1	ref|NP_001055714.1|	--*-	[Oryza sativa Japonica Group] dbj|BAF17628.1| [Oryza sativa Japonica Group]		
Niben101Scf03487g00014.1	AT1G53310.1	****	phosphoenolpyruvate carboxylase 1 LENGTH=967	IPR021135 (Phosphoenolpyruvate carboxylase)	GO:0003824 (catalytic activity), GO:0006099 (tricarboxylic acid cycle), GO:0008964 (phosphoenolpyruvate carboxylase activity), GO:0015977 (carbon fixation)
Niben101Scf03716g01001.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02358g02003.1	sp|P54675|PI3K3_DICDI	*-**	Phosphatidylinositol 3-kinase 3	IPR000008 (C2 domain), IPR011162 (MHC classes I/II-like antigen recognition protein), IPR015433 (Phosphatidylinositol Kinase), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0016303 (1-phosphatidylinositol-3-kinase activity), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor), GO:0046854 (phosphatidylinositol phosphorylation), GO:0048015 (phosphatidylinositol-mediated signaling)
Niben101Scf14945g01004.1	sp|P34722|KPC1_CAEEL	*-**	Protein kinase C-like 1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05206g00009.1	sp|P52409|E13B_WHEAT	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04709g00016.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02544g00001.1	sp|Q9JJX7|TYDP2_MOUSE	***-	Tyrosyl-DNA phosphodiesterase 2	IPR001876 (Zinc finger, RanBP2-type), IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0008270 (zinc ion binding)
Niben101Scf05419g00006.1	sp|A2ZIW7|SGS3_ORYSI	*-**	Protein SUPPRESSOR OF GENE SILENCING 3 homolog	IPR005380 (XS domain)	GO:0031047 (gene silencing by RNA)
Niben101Scf02946g00003.1	emb|CDX98744.1|	***-	BnaA03g45290D [Brassica napus]		
Niben101Scf23998g01006.1	sp|Q9LZJ3|XXT1_ARATH	***-	Xyloglucan 6-xylosyltransferase 1	IPR008630 (Galactosyl transferase)	GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00288g01004.1	ref|WP_017998225.1|	*-**	GTP-binding protein YsxC [Paracoccus sp. N5]	IPR006073 (GTP binding domain), IPR019987 (GTP-binding protein, ribosome biogenesis, YsxC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000917 (barrier septum assembly), GO:0005525 (GTP binding)
Niben101Scf04053g02007.1	sp|A6MFK9|CRVP_DEMVE	***-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf05132g00003.1			Unknown protein		
Niben101Scf05115g03001.1	sp|A2YEZ6|SAP8_ORYSI	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	IPR000058 (Zinc finger, AN1-type), IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf00028g04008.1	gb|KEH43864.1|	***-	heat shock 22 kDa protein [Medicago truncatula]		
Niben101Scf05438g05013.1	gb|AAA78253.1|	--*-	glycine-rich protein [Solanum lycopersicum]		
Niben101Scf03885g05013.1	sp|P49689|RS30_ARATH	***-	40S ribosomal protein S30	IPR006846 (Ribosomal protein S30)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00911g01003.1	sp|Q8LFU0|NFYAA_ARATH	****	Nuclear transcription factor Y subunit A-10	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03541g00037.1	gb|ABD65110.1|	--*-	GRAS family transcription factor [Brassica oleracea]		
Niben101Scf00571g04015.1	AT5G19860.1	***-	Protein of unknown function, DUF538 LENGTH=181	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf13886g01020.1	sp|Q43161|CAMT_STELP	****	Caffeoyl-CoA O-methyltransferase	IPR002935 (O-methyltransferase, family 3), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008171 (O-methyltransferase activity)
Niben101Scf02031g07001.1	sp|Q70Z18|NAP1B_TOBAC	****	Nucleosome assembly protein 1;2	IPR002164 (Nucleosome assembly protein (NAP))	GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf03045g05006.1	sp|Q02096|PGLR_PERAE	*-**	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03070g01003.1	sp|Q9LSN7|BH147_ARATH	*-*-	Transcription factor bHLH147		
Niben101Scf07194g00012.1	AT5G54800.1	***-	glucose 6-phosphate/phosphate translocator 1 LENGTH=388	IPR004696 (Triose phosphate/phosphoenolpyruvate translocator), IPR004853 (Triose-phosphate transporter domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf00854g09084.1			Unknown protein		
Niben101Scf01240g03008.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf03951g02002.1	sp|Q9FHM4|MA653_ARATH	****	65-kDa microtubule-associated protein 3	IPR007145 (Microtubule-associated protein, MAP65/Ase1/PRC1)	GO:0000226 (microtubule cytoskeleton organization), GO:0000910 (cytokinesis), GO:0008017 (microtubule binding)
Niben101Scf00276g02002.1	sp|Q39065|COPT1_ARATH	****	Copper transporter 1	IPR007274 (Ctr copper transporter)	GO:0005375 (copper ion transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0035434 (copper ion transmembrane transport)
Niben101Scf05488g00004.1			Unknown protein		
Niben101Scf02072g01011.1	sp|Q8LPU5|CMT3_MAIZE	****	DNA (cytosine-5)-methyltransferase 3	IPR001025 (Bromo adjacent homology (BAH) domain), IPR001525 (C-5 cytosine methyltransferase), IPR016197 (Chromo domain-like), IPR023779 (Chromo domain, conserved site), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0006306 (DNA methylation), GO:0008168 (methyltransferase activity)
Niben101Ctg14642g00003.1			Unknown protein		
Niben101Scf01517g08007.1			Unknown protein	IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	
Niben101Scf02007g05005.1	ref|XP_007043914.1|	***-	Gap junction beta-4 protein isoform 2 [Theobroma cacao] gb|EOX99745.1| Gap junction beta-4 protein isoform 2 [Theobroma cacao]	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf11785g00004.1	AT3G19490.1	*-*-	sodium:hydrogen antiporter 1 LENGTH=576		
Niben101Scf08373g00009.1	sp|Q5JH35|RL1_THEKO	****	50S ribosomal protein L1	IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf13843g00016.1			Unknown protein		
Niben101Scf03952g06010.1	AT3G61730.1	***-	reduced male fertility LENGTH=354	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00779g08010.1	sp|Q9XG54|OPR1_SOLLC	****	12-oxophytodienoate reductase 1	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02892g01012.1	sp|Q04789|ILVX_BACSU	*-*-	Acetolactate synthase	IPR011766 (Thiamine pyrophosphate enzyme, C-terminal TPP-binding), IPR012001 (Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain), IPR029035 (DHS-like NAD/FAD-binding domain), IPR029061 (Thiamin diphosphate-binding fold)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0030976 (thiamine pyrophosphate binding)
Niben101Scf04436g03002.1	AT3G07350.1	***-	Protein of unknown function (DUF506) LENGTH=298	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf04079g00001.1	sp|Q9M2S4|LRKS4_ARATH	*-*-	L-type lectin-domain containing receptor kinase S.4	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0030246 (carbohydrate binding)
Niben101Scf01782g10008.1			Unknown protein	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Ctg15717g00005.1	AT5G18190.1	*-*-	Protein kinase family protein LENGTH=691		
Niben101Scf04107g00016.1	sp|Q9Y4X5|ARI1_HUMAN	*-*-	E3 ubiquitin-protein ligase ARIH1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf04431g03016.1	AT3G52060.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=346	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf18540g00013.1	sp|Q651X6|CSLE6_ORYSJ	--**	Cellulose synthase-like protein E6	IPR005150 (Cellulose synthase)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf09409g01010.1	gb|AES59090.2|	*-*-	F-box/RNI/FBD-like domain protein [Medicago truncatula]		
Niben101Scf33457g00002.1	sp|P10978|POLX_TOBAC	*-*-	Retrovirus-related Pol polyprotein from transposon TNT 1-94		
Niben101Scf04386g04006.1	sp|Q46909|YGCS_ECOLI	--**	Inner membrane metabolite transport protein YgcS	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00991g03010.1	sp|Q4I1Y1|PPIL1_GIBZE	*-**	Peptidyl-prolyl cis-trans isomerase-like 1	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0004842 (ubiquitin-protein transferase activity), GO:0006457 (protein folding), GO:0016567 (protein ubiquitination)
Niben101Scf02569g00027.1	AT4G12290.1	****	Copper amine oxidase family protein LENGTH=741	IPR000269 (Copper amine oxidase)	GO:0005507 (copper ion binding), GO:0008131 (primary amine oxidase activity), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03860g04002.1	emb|CDY22178.1|	--*-	BnaC01g39230D [Brassica napus]		
Niben101Scf07072g01010.1	sp|Q754B9|ERG3_ASHGO	*-*-	C-5 sterol desaturase	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04287g03001.1	emb|CDY57850.1|	***-	BnaA07g38810D [Brassica napus]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf01557g00002.1	AT5G12400.1	*-**	DNA binding;zinc ion binding;DNA binding LENGTH=1602	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR018501 (DDT domain superfamily), IPR028942 (WHIM1 domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01745g01011.1	sp|Q84WU2|UBP13_ARATH	*-*-	Ubiquitin carboxyl-terminal hydrolase 13		
Niben101Ctg15478g00006.1	AT3G26560.1	*-**	ATP-dependent RNA helicase, putative LENGTH=1168	IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004386 (helicase activity)
Niben101Scf06782g02024.1	sp|Q8GUH1|PUB33_ARATH	--*-	U-box domain-containing protein 33		
Niben101Scf00109g07013.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain), IPR018392 (LysM domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00087g02009.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf14937g00010.1	gb|ABF95616.1|	--*-	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]		
Niben101Scf04686g02014.1			Unknown protein		
Niben101Scf09808g01001.1	sp|Q1T7B8|CENPO_CHICK	*-**	Centromere protein O	IPR018464 (Centromere protein O)	GO:0000776 (kinetochore), GO:0034508 (centromere complex assembly)
Niben101Scf11037g02006.1	gb|AAS91797.1|	--*-	MuDRA-like transposase [Cucumis melo] gb|AAU04773.1| MuDRA transposase-like [Cucumis melo]		
Niben101Scf04664g04017.1	sp|Q9LUA9|COL10_ARATH	--**	Zinc finger protein CONSTANS-LIKE 10	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf06127g00009.1			Unknown protein		
Niben101Scf09133g03012.1	sp|Q9STF0|LRKS3_ARATH	*-**	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03674g01012.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf00175g02006.1	sp|Q31NH0|RECR_SYNE7	--*-	Recombination protein RecR		
Niben101Ctg01135g00002.1	sp|Q9LNC0|PPR16_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR001633 (EAL domain), IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00327g01018.1	sp|Q9STF0|LRKS3_ARATH	--*-	Receptor like protein kinase S.3		
Niben101Scf04339g03007.1	tpg|DAA35905.1|	***-	TPA: hypothetical protein ZEAMMB73_888269 [Zea mays]	IPR028222 (AP-5 complex subunit zeta-1)	GO:0044599 (AP-5 adaptor complex)
Niben101Scf06221g04002.1			Unknown protein		
Niben101Scf00449g04003.1	AT3G55410.1	****	2-oxoglutarate dehydrogenase, E1 component LENGTH=1017	IPR011603 (2-oxoglutarate dehydrogenase E1 component), IPR029061 (Thiamin diphosphate-binding fold)	GO:0004591 (oxoglutarate dehydrogenase (succinyl-transferring) activity), GO:0006099 (tricarboxylic acid cycle), GO:0008152 (metabolic process), GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor), GO:0030976 (thiamine pyrophosphate binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07109g05004.1	AT4G35060.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=153	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf13802g01001.1			Unknown protein		
Niben101Scf08330g00010.1	sp|Q8L6Y4|EMF2_ARATH	***-	Polycomb group protein EMBRYONIC FLOWER 2	IPR019135 (Polycomb protein, VEFS-Box)	
Niben101Scf01171g00001.1	sp|Q9SXZ2|FT_ARATH	***-	Protein FLOWERING LOCUS T	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf00375g01002.1	AT3G52790.1	***-	peptidoglycan-binding LysM domain-containing protein LENGTH=109	IPR018392 (LysM domain)	
Niben101Scf02562g00020.1	AT4G30920.1	****	Cytosol aminopeptidase family protein LENGTH=583	IPR011356 (Leucine aminopeptidase/peptidase B)	GO:0004177 (aminopeptidase activity), GO:0005622 (intracellular), GO:0005737 (cytoplasm), GO:0006508 (proteolysis), GO:0008235 (metalloexopeptidase activity), GO:0019538 (protein metabolic process), GO:0030145 (manganese ion binding)
Niben101Scf04285g03022.1	sp|P37287|PIGA_HUMAN	*-*-	Phosphatidylinositol N-acetylglucosaminyltransferase subunit A	IPR013234 (PIGA, GPI anchor biosynthesis)	GO:0006506 (GPI anchor biosynthetic process)
Niben101Scf02688g01026.1			Unknown protein		
Niben101Scf03766g06008.1	sp|Q07060|ATP9_PETSP	*-**	ATP synthase subunit 9, mitochondrial	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf00214g00007.1	gb|ABE01833.1|	***-	CK25 [Nicotiana tabacum]		
Niben101Scf01032g02016.1	AT5G09890.2	*-**	Protein kinase family protein LENGTH=516	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01519g03013.1	sp|Q9SS47|PUM4_ARATH	*-*-	Pumilio homolog 4	IPR012940 (Nucleic acid binding NABP), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf06739g02003.1	sp|Q8CMQ2|AHPC_STAES	*-**	Alkyl hydroperoxide reductase subunit C	IPR012336 (Thioredoxin-like fold)	GO:0016209 (antioxidant activity), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05118g11009.1	AT1G63830.2	***-	PLAC8 family protein LENGTH=232	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf01917g05004.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf01611g03014.1	sp|Q9XF63|ATL3_ARATH	--*-	RING-H2 finger protein ATL3	IPR007527 (Zinc finger, SWIM-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06437g05003.1	sp|Q9M2I9|MCC21_ARATH	--*-	MATH domain and coiled-coil domain-containing protein	IPR008974 (TRAF-like)	GO:0005515 (protein binding)
Niben101Scf02655g01002.1			Unknown protein		
Niben101Scf00539g07027.1	sp|P35476|PLAS1_TOBAC	***-	Plastocyanin A'/A''	IPR001235 (Blue (type 1) copper protein, plastocyanin-type), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0005507 (copper ion binding), GO:0009055 (electron carrier activity)
Niben101Scf12089g00012.1	sp|Q5R831|S35B3_PONAB	***-	Adenosine 3'-phospho 5'-phosphosulfate transporter 2	IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf03607g00010.1	sp|Q1RIM1|TOP1_RICBR	****	DNA topoisomerase 1	IPR000380 (DNA topoisomerase, type IA), IPR023405 (DNA topoisomerase, type IA, core domain), IPR023406 (DNA topoisomerase, type IA, active site), IPR025589 (Topoisomerase C-terminal repeat)	GO:0003677 (DNA binding), GO:0003916 (DNA topoisomerase activity), GO:0003917 (DNA topoisomerase type I activity), GO:0005694 (chromosome), GO:0006265 (DNA topological change)
Niben101Scf03094g05009.1	sp|Q6AYK6|CYBP_RAT	***-	Calcyclin-binding protein	IPR007699 (SGS), IPR008978 (HSP20-like chaperone), IPR015120 (Siah interacting protein, N-terminal)	
Niben101Scf00034g04002.1	ref|XP_002519145.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF43356.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf07474g01013.1	sp|P53331|REXO1_YEAST	****	RNA exonuclease 1	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf04643g04002.1	gb|KEH42167.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00680g01002.1	AT2G12646.1	*-*-	PLATZ transcription factor family protein LENGTH=256	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf07639g05009.1	gb|ABI34321.1|	--*-	RNase H family protein [Solanum demissum]		
Niben101Scf20949g00002.1			Unknown protein		
Niben101Scf03797g00013.1	AT1G14360.1	***-	UDP-galactose transporter 3 LENGTH=331	IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf02710g00012.1	sp|O80722|PME4_ARATH	*-**	Pectinesterase 4	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02309g03020.1	sp|Q09X17|PSAA_MORIN	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf02253g07014.1	sp|P81393|MYB08_ANTMA	***-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01065g08004.1	ref|XP_003626920.1|	-***	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf10333g00030.1	sp|Q8GZA8|ULT1_ARATH	***-	Protein ULTRAPETALA 1		
Niben101Scf06081g02018.1	gb|KEH42596.1|	*-*-	poly(rC)-binding-like protein [Medicago truncatula]		
Niben101Scf04675g00018.1	sp|Q6BSH2|SNF7_DEBHA	****	Vacuolar-sorting protein SNF7	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf02562g01011.1	sp|G5CEW6|IF4G_WHEAT	*-*-	Eukaryotic translation initiation factor 4G	IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf11124g01032.1	sp|Q6IV56|RN141_DANRE	--*-	RING finger protein 141	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01009g01015.1	AT5G42870.1	*-*-	phosphatidic acid phosphohydrolase 2 LENGTH=930	IPR007651 (Lipin, N-terminal), IPR013209 (LNS2, Lipin/Ned1/Smp2), IPR018247 (EF-Hand 1, calcium-binding site), IPR023214 (HAD-like domain)	
Niben101Scf01970g06013.1	sp|O64722|ZHD3_ARATH	*-*-	Zinc-finger homeodomain protein 3	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain)	
Niben101Scf05554g07015.1	AT1G38065.1	***-	O-fucosyltransferase family protein LENGTH=470	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf02542g01001.1	gb|ABF97674.1|	--*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf01409g05008.1	sp|Q9FKK7|XYLA_ARATH	****	Xylose isomerase	IPR001998 (Xylose isomerase)	GO:0005975 (carbohydrate metabolic process), GO:0009045 (xylose isomerase activity)
Niben101Scf04934g00003.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02657g01003.1	sp|O64823|MCU2_ARATH	***-	Calcium uniporter protein 2, mitochondrial	IPR006769 (Coiled-coil domain containing protein 109, C-terminal)	
Niben101Scf15051g00020.1			Unknown protein		
Niben101Scf10375g01020.1	sp|P08373|MURB_ECOLI	*-**	UDP-N-acetylenolpyruvoylglucosamine reductase	IPR003170 (UDP-N-acetylenolpyruvoylglucosamine reductase), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06193g02011.1	gb|AFI44305.1|	*-**	DNA polymerase (mitochondrion) [Silene vulgaris]	IPR004868 (DNA-directed DNA polymerase, family B, mitochondria/virus), IPR012337 (Ribonuclease H-like domain), IPR017964 (DNA-directed DNA polymerase, family B, conserved site)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication), GO:0008408 (3'-5' exonuclease activity)
Niben101Ctg12894g00002.1	sp|P21885|SPEA_BACSU	*-*-	Arginine decarboxylase	IPR008286 (Orn/Lys/Arg decarboxylase, C-terminal), IPR015422 (Pyridoxal phosphate-dependent transferase, major region, subdomain 2)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf08519g03017.1	emb|CDY35740.1|	--*-	BnaC03g58610D [Brassica napus]		
Niben101Scf10492g00014.1	ref|XP_003603358.1|	***-	CGS1 mRNA stability [Medicago truncatula]		
Niben101Scf05391g01009.1	ref|XP_007043719.1|	***-	Vascular plant one zinc finger protein isoform 1 [Theobroma cacao] gb|EOX99550.1| Vascular plant one zinc finger protein isoform 1 [Theobroma cacao]		
Niben101Scf05855g03003.1	AT3G60390.1	***-	homeobox-leucine zipper protein 3 LENGTH=315	IPR003106 (Leucine zipper, homeobox-associated), IPR006712 (HD-ZIP protein, N-terminal), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03867g02043.1	sp|Q2M2U4|RNH2C_BOVIN	***-	Ribonuclease H2 subunit C	IPR013924 (Ribonuclease H2, subunit C)	
Niben101Scf05047g04010.1	AT2G33620.1	*-**	AT hook motif DNA-binding family protein LENGTH=351	IPR005175 (Domain of unknown function DUF296), IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Scf07436g00003.1	sp|O34688|YBCC_BACSU	--*-	UPF0753 protein YbcC		
Niben101Scf06081g03033.1	sp|Q6D2F1|ARNA_PECAS	*-*-	Bifunctional polymyxin resistance protein ArnA	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf08137g01032.1	sp|Q8LDW9|XTH9_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 9	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf04362g01003.1			Unknown protein		
Niben101Scf15437g02001.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00442g10002.1			Unknown protein		
Niben101Scf03048g03002.1	AT1G59620.1	*-*-	Disease resistance protein (CC-NBS-LRR class) family LENGTH=842	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf04847g03001.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01927g09016.1	sp|Q8GYD2|MND1_ARATH	***-	Meiotic nuclear division protein 1 homolog	IPR005647 (Meiotic nuclear division protein 1)	
Niben101Scf05038g00001.1	sp|Q20636|GBB2_CAEEL	--**	Guanine nucleotide-binding protein subunit beta-2	IPR003854 (Gibberellin regulated protein), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01035g06018.1	sp|Q9HAU5|RENT2_HUMAN	*-*-	Regulator of nonsense transcripts 2	IPR007193 (Up-frameshift suppressor 2), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf22370g00003.1	AT1G23000.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=358	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Ctg09570g00001.1	AT5G05830.1	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=204	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf01073g00003.1	sp|Q06327|LOX1_ARATH	***-	Linoleate 9S-lipoxygenase 1	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09659g01005.1	sp|P56820|EIF3D_ARATH	****	Eukaryotic translation initiation factor 3 subunit D	IPR007783 (Eukaryotic translation initiation factor 3 subunit D)	GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf10732g01006.1			Unknown protein		
Niben101Scf10330g05020.1	AT2G39750.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=694	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf00662g00007.1	AT5G23200.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=399		
Niben101Scf01108g06010.1	ref|XP_010103716.1|	--*-	Sentrin-specific protease 1 [Morus notabilis] gb|EXB96858.1| Sentrin-specific protease 1 [Morus notabilis]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf00730g02011.1	AT5G44785.2	****	organellar single-stranded DNA binding protein 3 LENGTH=442	IPR000424 (Primosome PriB/single-strand DNA-binding)	GO:0003697 (single-stranded DNA binding)
Niben101Scf07882g01007.1	gb|KEH32027.1|	--*-	replication protein A 70 kDa protein [Medicago truncatula]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf03911g00006.1	sp|Q3T073|SERP2_BOVIN	****	Stress-associated endoplasmic reticulum protein 2	IPR010580 (Stress-associated endoplasmic reticulum protein)	GO:0005783 (endoplasmic reticulum)
Niben101Scf05009g02008.1			Unknown protein		
Niben101Scf01374g08003.1	AT3G18380.2	*-*-	sequence-specific DNA binding transcription factors;sequence-specific DNA binding LENGTH=349		
Niben101Scf05919g01007.1	sp|O23208|ATB40_ARATH	--*-	Homeobox-leucine zipper protein ATHB-40	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR013978 (MEKHLA), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf00428g02002.1	sp|Q9FML2|HDA6_ARATH	****	Histone deacetylase 6	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	GO:0004407 (histone deacetylase activity), GO:0016575 (histone deacetylation)
Niben101Scf05108g02017.1	sp|Q9LUA9|COL10_ARATH	****	Zinc finger protein CONSTANS-LIKE 10	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf03295g05004.1	sp|Q9FUL4|RL24_PRUAV	*-*-	60S ribosomal protein L24	IPR000988 (Ribosomal protein L24e-related)	
Niben101Scf04941g03001.1	sp|Q8R146|APEH_MOUSE	***-	Acylamino-acid-releasing enzyme	IPR011042 (Six-bladed beta-propeller, TolB-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf02626g06001.1	sp|Q9SUY0|FB244_ARATH	*-*-	F-box protein	IPR017451 (F-box associated interaction domain)	
Niben101Scf12498g00001.1	AT5G18030.1	***-	SAUR-like auxin-responsive protein family LENGTH=88	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf05486g01017.1	sp|Q9W7F2|WDR1A_XENLA	--*-	WD repeat-containing protein 1-A	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02104g01009.1	AT4G13930.1	****	serine hydroxymethyltransferase 4 LENGTH=471	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf07115g00007.1			Unknown protein		
Niben101Scf00132g03016.1	gb|KEH21267.1|	*-*-	DUF2439 family protein [Medicago truncatula]	IPR018838 (Domain of unknown function DUF2439)	
Niben101Scf06836g01013.1	AT4G04630.1	***-	Protein of unknown function, DUF584 LENGTH=168	IPR007608 (Senescence regulator S40)	
Niben101Scf00051g01009.1	ref|WP_008236070.1|	****	Iron-sulfur cluster assembly protein SufB [Richelia intracellularis] emb|CCH68427.1| Iron-sulfur cluster assembly protein SufB [Richelia intracellularis HH01]	IPR000825 (SUF system FeS cluster assembly, SufBD)	GO:0016226 (iron-sulfur cluster assembly)
Niben101Scf08762g00001.1	ref|XP_002313513.1|	--*-	hydroxyproline-rich glycoprotein [Populus trichocarpa] gb|EEE87468.1| hydroxyproline-rich glycoprotein [Populus trichocarpa]		
Niben101Scf01450g03003.1	sp|Q9FM96|PSL4_ARATH	*-*-	Glucosidase 2 subunit beta	IPR002172 (Low-density lipoprotein (LDL) receptor class A repeat), IPR028146 (Glucosidase II beta subunit, N-terminal)	GO:0005515 (protein binding)
Niben101Scf06804g00009.1			Unknown protein		
Niben101Scf04845g00011.1	AT1G70950.1	*-*-	TPX2 (targeting protein for Xklp2) protein family LENGTH=478	IPR027329 (TPX2, C-terminal domain)	
Niben101Scf02886g01003.1			Unknown protein		
Niben101Scf00372g05021.1	sp|P49082|GPA1_LOTJA	*-**	Guanine nucleotide-binding protein alpha-1 subunit	IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR011011 (Zinc finger, FYVE/PHD-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0007186 (G-protein coupled receptor signaling pathway), GO:0019001 (guanyl nucleotide binding), GO:0031683 (G-protein beta/gamma-subunit complex binding)
Niben101Scf02367g04001.1	sp|Q6ZKC0|14333_ORYSJ	***-	14-3-3-like protein GF14-C	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf07437g02008.1	AT4G02130.1	*-*-	galacturonosyltransferase 6 LENGTH=346	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf00705g05004.1	ref|XP_002529925.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF32479.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00044g00021.1	AT3G50430.1	***-	unknown protein; Has 54 Blast hits to 54 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=642	IPR029415 (Protein Lines, C-terminal)	
Niben101Scf00861g06003.1	emb|CDY01049.1|	*-*-	BnaC05g41510D [Brassica napus]		
Niben101Scf11524g01004.1	AT4G12750.1	*-*-	Homeodomain-like transcriptional regulator LENGTH=1131	IPR018501 (DDT domain superfamily), IPR028942 (WHIM1 domain)	
Niben101Scf01813g00011.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01534g02026.1	sp|Q9SE45|ANXD3_ARATH	***-	Annexin D3	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf00487g01007.1			Unknown protein		
Niben101Scf06096g01004.1	AT4G31000.1	*-*-	Calmodulin-binding protein LENGTH=562	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf14344g00005.1	sp|P05117|PGLR_SOLLC	****	Polygalacturonase-2	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08870g02016.1			Unknown protein		
Niben101Scf06736g08010.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02919g04001.1	AT3G17980.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=177	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf04539g02010.1	gb|AES59286.2|	*-*-	PHAX RNA-binding domain protein [Medicago truncatula]	IPR019385 (Phosphorylated adapter RNA export protein, RNA-binding domain)	
Niben101Scf03045g01012.1	sp|Q9FJU9|E1313_ARATH	***-	Glucan endo-1,3-beta-glucosidase 13	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00096g04017.1	ref|XP_007031788.1|	*-*-	Thioredoxin superfamily protein isoform 3 [Theobroma cacao] gb|EOY02714.1| Thioredoxin superfamily protein isoform 3 [Theobroma cacao]		
Niben101Scf03189g02004.1	emb|CDY02766.1|	***-	BnaC02g11230D [Brassica napus]	IPR008546 (Domain of unknown function DUF828), IPR013666 (Pleckstrin-like, plant)	
Niben101Scf04457g04008.1	gb|ABN08796.1|	****	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf09452g01021.1	AT4G15755.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=289	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00419g11019.1	sp|Q9M2P4|SINA2_ARATH	*-**	E3 ubiquitin-protein ligase SINAT2	IPR002524 (Cation efflux protein), IPR008974 (TRAF-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027469 (Cation efflux protein transmembrane domain)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0006812 (cation transport), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0016567 (protein ubiquitination), GO:0055085 (transmembrane transport)
Niben101Scf08175g01008.1	sp|Q92797|SYMPK_HUMAN	*-*-	Symplekin	IPR016024 (Armadillo-type fold), IPR021850 (Symplekin/Pta1), IPR022075 (Symplekin  C-terminal)	GO:0005488 (binding)
Niben101Scf04133g00003.1	ref|XP_003597700.1|	*-*-	Activating signal cointegrator 1 complex subunit [Medicago truncatula]	IPR009097 (RNA ligase/cyclic nucleotide phosphodiesterase)	
Niben101Scf17490g00016.1	sp|O64705|PP184_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02400g00001.1	AT1G02100.3	*-**	Leucine carboxyl methyltransferase LENGTH=332	IPR007213 (Leucine carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf18639g00025.1	sp|A1JIK3|ACSA_YERE8	*-*-	Acetyl-coenzyme A synthetase	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf09644g00018.1	AT1G69830.1	****	alpha-amylase-like 3 LENGTH=887	IPR015902 (Glycoside hydrolase, family 13)	GO:0003824 (catalytic activity), GO:0004556 (alpha-amylase activity), GO:0005509 (calcium ion binding), GO:0005975 (carbohydrate metabolic process), GO:0043169 (cation binding)
Niben101Scf01189g04013.1	AT1G65710.1	*-*-	unknown protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=455		
Niben101Scf02869g15010.1	sp|E1B932|KLH12_BOVIN	--*-	Kelch-like protein 12	IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf07743g03005.1	ref|XP_002522308.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF39992.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06023g03018.1	sp|P46629|RAB25_RABIT	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02823g01002.1	AT4G37790.1	*-*-	Homeobox-leucine zipper protein family LENGTH=278	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01418g00015.1	ref|XP_007040778.1|	***-	5'-AMP-activated protein kinase subunit gamma-3, putative [Theobroma cacao] gb|EOY25279.1| 5'-AMP-activated protein kinase subunit gamma-3, putative [Theobroma cacao]	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf02622g09017.1	ref|NP_001046085.1|	*-*-	OsJ_05619 [Oryza sativa Japonica Group]	IPR024553 (Domain of unknown function DUF2828)	
Niben101Scf12045g06031.1			Unknown protein		
Niben101Scf04122g04012.1	sp|P0C5A3|DPNP_ORYSA	***-	3'(2'),5'-bisphosphate nucleotidase	IPR000760 (Inositol monophosphatase)	GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf12589g00033.1	sp|Q9LNF2|PMEI1_ARATH	--**	Pectinesterase inhibitor 1	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf05245g03003.1	AT3G45580.1	*-**	RING/U-box protein with C6HC-type zinc finger LENGTH=408	IPR002867 (Zinc finger, C6HC-type)	GO:0008270 (zinc ion binding)
Niben101Scf36844g00003.1	AT4G27450.1	***-	Aluminium induced protein with YGL and LRDR motifs LENGTH=250	IPR024286 (Domain of unknown function DUF3700), IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf06862g00001.1	AT2G02450.2	*-*-	NAC domain containing protein 35 LENGTH=414	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01024g04003.1	gb|KEH39046.1|	***-	wound-responsive family protein [Medicago truncatula]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf05720g01005.1	AT5G46330.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1173		
Niben101Scf03011g01008.1	sp|Q9S9N9|CCR1_ARATH	***-	Cinnamoyl-CoA reductase 1	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf00150g04007.1	sp|Q9LHI0|NDUA6_ARATH	***-	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6		
Niben101Scf02451g06029.1	sp|Q8T2T7|TOP3_DICDI	*-**	DNA topoisomerase 3	IPR000380 (DNA topoisomerase, type IA), IPR023405 (DNA topoisomerase, type IA, core domain)	GO:0003677 (DNA binding), GO:0003916 (DNA topoisomerase activity), GO:0003917 (DNA topoisomerase type I activity), GO:0006265 (DNA topological change)
Niben101Scf03446g10010.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf16437g00002.1	AT4G21270.1	****	kinesin 1 LENGTH=793	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf06081g04017.1	AT1G48480.1	****	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02842g01016.1	sp|O59942|AAP2_NEUCR	*-**	Amino-acid permease 2	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf11766g00010.1	sp|O03376|AOX3_SOYBN	****	Alternative oxidase 3, mitochondrial	IPR002680 (Alternative oxidase)	GO:0009916 (alternative oxidase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02074g06021.1			Unknown protein		
Niben101Scf01024g04004.1	gb|KEH39046.1|	***-	wound-responsive family protein [Medicago truncatula]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf02077g09003.1	gb|AES90588.2|	--*-	executer 1 [Medicago truncatula]	IPR001943 (UVR domain)	GO:0005515 (protein binding)
Niben101Scf01190g04010.1	sp|Q9FH57|GATA5_ARATH	****	GATA transcription factor 5	IPR016679 (Transcription factor, GATA, plant)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding), GO:0045893 (positive regulation of transcription, DNA-templated)
Niben101Scf10268g00001.1	ref|NP_001057838.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf19344g00001.1	AT5G02460.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=399	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05146g01005.1	sp|Q9NYT6|ZN226_HUMAN	--*-	Zinc finger protein 226	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR019786 (Zinc finger, PHD-type, conserved site)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf02735g00007.1	sp|O49421|FB238_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02282g01008.1	sp|Q9FJX5|BT4_ARATH	***-	BTB/POZ and TAZ domain-containing protein 4	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf10545g00006.1	gb|ABV21218.1|	--*-	[Arabidopsis thaliana]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf07607g03002.1	sp|P16924|P4HA1_CHICK	*-*-	Prolyl 4-hydroxylase subunit alpha-1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05245g03002.1			Unknown protein		
Niben101Scf02373g01003.1	sp|Q6DRN3|NOC3L_DANRE	***-	Nucleolar complex protein 3 homolog	IPR005612 (CCAAT-binding factor), IPR011501 (Nucleolar complex-associated), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02074g04130.1			Unknown protein		
Niben101Scf07247g04008.1	sp|F4HPR5|DRP5A_ARATH	***-	Dynamin-related protein 5A	IPR001401 (Dynamin, GTPase domain), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf08227g00003.1	sp|P61819|CBIX_METMP	****	Sirohydrochlorin cobaltochelatase	IPR002762 (Cobalamin (vitamin B12) biosynthesis CbiX)	GO:0009236 (cobalamin biosynthetic process), GO:0016852 (sirohydrochlorin cobaltochelatase activity)
Niben101Scf03975g01011.1	sp|Q9LVD4|ORP4C_ARATH	***-	Oxysterol-binding protein-related protein 4C	IPR000648 (Oxysterol-binding protein)	
Niben101Scf02408g04003.1	sp|A9MW81|AES_SALPB	*-*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf08137g03014.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf02763g05012.1	sp|P43508|CPR4_CAEEL	*-**	Cathepsin B-like cysteine proteinase 4	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00419g11018.1	sp|Q03164|KMT2A_HUMAN	*-**	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR003616 (Post-SET domain), IPR006560 (AWS domain), IPR025787 (Histone-lysine N-methyltransferase, SET2, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0018024 (histone-lysine N-methyltransferase activity)
Niben101Scf00715g00005.1	AT1G80690.1	***-	PPPDE putative thiol peptidase family protein LENGTH=227	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf02413g01012.1	sp|O24145|4CL1_TOBAC	***-	4-coumarate--CoA ligase 1	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01085g07010.1	gb|ABF94595.1|	*-*-	Nucleotidyltransferase domain containing protein, expressed [Oryza sativa Japonica Group]		
Niben101Scf01501g00001.1	sp|Q9SZD1|TCX5_ARATH	***-	Protein tesmin/TSO1-like CXC 5	IPR005172 (CRC domain), IPR028307 (Lin-54 family)	
Niben101Scf14604g00001.1	gb|AFI44260.1|	*-*-	cytochrome c biogenesis C (mitochondrion) [Silene vulgaris]		
Niben101Scf05535g02006.1	sp|A8XGH1|RPAB1_CAEBR	****	DNA-directed RNA polymerases I, II, and III subunit RPABC1	IPR014381 (DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf01738g04008.1	sp|P34120|PSA7_DICDI	****	Proteasome subunit alpha type-7	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf01318g01012.1	AT5G35220.1	****	Peptidase M50 family protein LENGTH=548	IPR008915 (Peptidase M50)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03326g02001.1	AT5G16810.1	****	Protein kinase superfamily protein LENGTH=418	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05321g02004.1	sp|Q0WQF4|VP53A_ARATH	--*-	Vacuolar protein sorting-associated protein 53 A		
Niben101Scf02160g06067.1	sp|B0Z4R7|RK2_OENAR	****	50S ribosomal protein L2, chloroplastic	IPR002171 (Ribosomal protein L2)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit), GO:0016740 (transferase activity)
Niben101Scf01795g00004.1	gb|AES89035.2|	*-*-	trigger factor-like protein, putative [Medicago truncatula]		
Niben101Scf01241g07001.1	ref|WP_024641342.1|	--*-	peptidase C13 [Pseudomonas syringae]		
Niben101Scf04174g03005.1	sp|Q9FPS9|UBP15_ARATH	*-**	Ubiquitin carboxyl-terminal hydrolase 15	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf04206g00005.1	AT3G24740.1	***-	Protein of unknown function (DUF1644) LENGTH=354	IPR012866 (Protein of unknown function DUF1644)	
Niben101Scf10650g00011.1	sp|Q9LU15|AHP4_ARATH	***-	Histidine-containing phosphotransfer protein 4	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity)
Niben101Scf03221g01011.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04223g01041.1			Unknown protein		
Niben101Scf02608g03011.1	sp|P0DI65|CSPLL_MAIZE	*-*-	CASP-like protein 16	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf00625g01001.1	sp|A2AUC9|KLH41_MOUSE	*-*-	Kelch-like protein 41	IPR001810 (F-box domain), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf00044g00020.1	sp|P70581|NUPL1_RAT	--*-	Nucleoporin p58/p45	IPR024882 (Nucleoporin p58/p45)	GO:0005643 (nuclear pore), GO:0006913 (nucleocytoplasmic transport)
Niben101Scf01964g12006.1	sp|Q5ZI67|NHLC2_CHICK	--*-	NHL repeat-containing protein 2	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf29780g00002.1	sp|Q8S8Q6|TET8_ARATH	***-	Tetraspanin-8	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Ctg13971g00002.1			Unknown protein		
Niben101Scf08290g00012.1			Unknown protein		
Niben101Scf06974g00002.1	AT5G14870.1	***-	cyclic nucleotide-gated channel 18 LENGTH=706	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf00063g12004.1	sp|Q9CA68|GDL31_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf07720g00021.1	gb|ABA93474.1|	*-*-	FHA domain containing protein, expressed [Oryza sativa Japonica Group]		
Niben101Scf01142g05006.1			Unknown protein		
Niben101Scf16197g00007.1	sp|Q9FZ95|PUP3_ARATH	*-*-	Purine permease 3	IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf04328g00054.1	AT1G14920.1	***-	GRAS family transcription factor family protein LENGTH=533	IPR005202 (Transcription factor GRAS), IPR030027 (Scarecrow-like protein 28)	
Niben101Scf03819g01015.1	ref|XP_007037498.1|	--*-	Endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain, putative [Theobroma cacao] gb|EOY21999.1| Endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain, putative [Theobroma cacao]		
Niben101Scf01628g01010.1	AT3G54040.1	***-	PAR1 protein LENGTH=183	IPR009489 (PAR1)	
Niben101Scf02111g11001.1	AT3G17000.1	***-	ubiquitin-conjugating enzyme 32 LENGTH=309	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf01162g02003.1	gb|KEH37114.1|	--*-	DUF4283 domain protein [Medicago truncatula]		
Niben101Scf02027g01008.1	AT5G51050.1	***-	Mitochondrial substrate carrier family protein LENGTH=487	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf00280g02016.1	sp|O80641|GASA8_ARATH	***-	Gibberellin-regulated protein 8	IPR003854 (Gibberellin regulated protein)	
Niben101Scf08876g00008.1	sp|Q94AN4|AP2L1_ARATH	****	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03278g06010.1	emb|CDY18467.1|	*-*-	BnaA04g21200D [Brassica napus]		
Niben101Scf01001g01014.1	sp|P48416|CP10_LYMST	*-*-	Cytochrome P450 10	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03106g02003.1	AT1G70070.1	*-*-	DEAD/DEAH box helicase, putative LENGTH=1171	IPR012961 (DSH, C-terminal)	GO:0005524 (ATP binding), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf13935g00003.1	sp|Q6C9R9|SFH5_YARLI	*-*-	Phosphatidylinositol transfer protein SFH5	IPR001071 (Cellular retinaldehyde binding/alpha-tocopherol transport), IPR009038 (GOLD), IPR011074 (CRAL/TRIO, N-terminal domain)	GO:0005215 (transporter activity), GO:0005622 (intracellular), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf02164g06013.1	gb|AES98288.2|	***-	localization and RNA pol II promoter Fmp27 domain protein [Medicago truncatula]	IPR019441 (FMP27, GFWDK domain), IPR019443 (FMP27,  C-terminal)	
Niben101Scf02289g06003.1			Unknown protein		
Niben101Scf02563g06018.1			Unknown protein		
Niben101Scf02044g12008.1	sp|Q9SSR4|PPR77_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf11540g00008.1	gb|AAX95644.1|	--*-	HEAT repeat, putative [Oryza sativa Japonica Group]		
Niben101Scf01430g02010.1	AT1G66340.1	****	Signal transduction histidine kinase, hybrid-type, ethylene sensor LENGTH=738	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR029016 (GAF domain-like)	GO:0000155 (phosphorelay sensor kinase activity), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05146g07014.1			Unknown protein		
Niben101Scf05541g02009.1	sp|Q5U5Q3|MEX3C_HUMAN	--**	RNA-binding E3 ubiquitin-protein ligase MEX3C	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01283g02014.1	AT3G14360.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=518		
Niben101Scf00446g06009.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf00428g09006.1	AT1G18390.2	*-*-	Protein kinase superfamily protein LENGTH=654	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf03138g01005.1	dbj|BAA81661.1|	--*-	F1F0-ATPase inhibitor protein [Oryza sativa Japonica Group]		
Niben101Scf05077g00018.1			Unknown protein		
Niben101Scf02686g00001.1	sp|Q9MDA1|RK23_OENEH	*-*-	50S ribosomal protein L23, chloroplastic	IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05188g02014.1	emb|CDP83276.1|	*-**	riboflavin kinase/FMN adenylyltransferase [Mycobacterium farcinogenes]	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0003919 (FMN adenylyltransferase activity), GO:0009231 (riboflavin biosynthetic process)
Niben101Scf04294g01001.1	AT5G60620.1	***-	glycerol-3-phosphate acyltransferase 9 LENGTH=376	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf03949g07017.1	sp|Q9C652|RBP1_ARATH	*-**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01191g03008.1	ref|WP_008309544.1|	***-	protein of unknown function (DUF1995) [Leptolyngbya sp. PCC 6406]	IPR018962 (Domain of unknown function DUF1995)	
Niben101Scf01993g08029.1	sp|Q940G0|TMN1_ARATH	*-*-	Transmembrane 9 superfamily member 1	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf07436g00004.1	emb|CDX74605.1|	***-	BnaA04g07840D [Brassica napus]		
Niben101Scf07631g00004.1	ref|XP_002524325.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38065.1| conserved hypothetical protein [Ricinus communis]	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf01269g13032.1	dbj|BAM36190.1|	***-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf00012g00012.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00508g00007.1	sp|P00297|PLAS_SOLCR	***-	Plastocyanin	IPR001235 (Blue (type 1) copper protein, plastocyanin-type), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0005507 (copper ion binding), GO:0009055 (electron carrier activity)
Niben101Scf08519g03018.1	AT5G11290.1	*-*-	Plant protein of unknown function (DUF247) LENGTH=353	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf00063g05010.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06869g00010.1	ref|XP_003592099.1|	*-*-	17.6 kDa class I heat shock protein [Medicago truncatula] gb|AES62350.1| hsp20/alpha crystallin family protein [Medicago truncatula]	IPR008978 (HSP20-like chaperone)	
Niben101Scf00574g09003.1			Unknown protein		
Niben101Scf04695g00003.1	AT2G01480.1	*-*-	O-fucosyltransferase family protein LENGTH=567	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf06650g03010.1	sp|Q9ZQI8|NLTL2_ARATH	****	Non-specific lipid-transfer protein-like protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf36099g00004.1	AT1G52150.2	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=837	IPR002913 (START domain), IPR013978 (MEKHLA), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf09296g01001.1	sp|Q7XR52|CYSP1_ORYSJ	*-**	Cysteine protease 1	IPR013128 (Peptidase C1A)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00270g11015.1	AT1G79120.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=413	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf01109g03004.1	emb|CDY54845.1|	-**-	BnaC05g51340D [Brassica napus]		
Niben101Ctg14899g00003.1	sp|P73456|FTSZ_SYNY3	*-*-	Cell division protein FtsZ	IPR008280 (Tubulin/FtsZ, C-terminal)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0006184 (GTP catabolic process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf06551g00012.1	gb|ABN08841.1|	--*-	RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula]		
Niben101Scf08818g00003.1	AT2G26135.1	*-**	RING/U-box protein with C6HC-type zinc finger LENGTH=384	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00107g00004.1	emb|CDY60883.1|	*-*-	BnaC01g40900D [Brassica napus]	IPR007770 (Protein of unknown function DUF679)	
Niben101Scf03628g00004.1	sp|Q5SX19|PIGL_MOUSE	--*-	N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase	IPR003737 (N-acetylglucosaminyl phosphatidylinositol deacetylase-related), IPR024078 (Putative deacetylase LmbE-like domain)	
Niben101Scf00535g00009.1	gb|AES92662.2|	***-	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]		
Niben101Scf07704g00003.1			Unknown protein		
Niben101Scf04432g06002.1	AT3G04970.1	*-*-	DHHC-type zinc finger family protein LENGTH=397		
Niben101Scf03702g04021.1	sp|O48540|MAN1_SOLLC	*-*-	Mannan endo-1,4-beta-mannosidase 1	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf13666g00001.1	AT5G04020.1	*-**	calmodulin binding LENGTH=1495	IPR012417 (Calmodulin-binding domain, plant)	GO:0005516 (calmodulin binding)
Niben101Scf08208g02022.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf12422g01011.1	gb|EQB54220.1|	*-**	base excision DNA repair protein [Colletotrichum gloeosporioides Cg-14]	IPR011257 (DNA glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair)
Niben101Scf01102g00002.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf03056g02018.1	AT3G02100.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=464	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06238g01014.1	sp|O50055|COL1_ARATH	*-*-	Zinc finger protein CONSTANS-LIKE 1	IPR010402 (CCT domain)	GO:0005515 (protein binding)
Niben101Scf31210g00002.1	AT3G02700.1	*-*-	NC domain-containing protein-related LENGTH=252	IPR007053 (LRAT-like domain)	
Niben101Scf02227g03001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00288g07008.1	sp|Q1HDT2|CHX24_ARATH	*-**	Cation/H(+) antiporter 24	IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf00100g00002.1	sp|O04514|OPT2_ARATH	*-*-	Oligopeptide transporter 2	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf09590g03012.1	gb|ADL36962.1|	*-*-	At1g62390-like protein [Arabidopsis lyrata subsp. lyrata]	IPR000270 (Phox/Bem1p), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03227g00001.1	sp|Q01780|EXOSX_HUMAN	*-*-	Exosome component 10	IPR002121 (HRDC domain), IPR012337 (Ribonuclease H-like domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003824 (catalytic activity), GO:0005622 (intracellular), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity), GO:0044237 (cellular metabolic process)
Niben101Scf03924g01002.1	gb|AAB87670.1|	***-	adenyl cyclase [Nicotiana tabacum]		
Niben101Scf03293g00005.1	sp|P31384|CCR4_YEAST	*-*-	Glucose-repressible alcohol dehydrogenase transcriptional effector	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf05118g10007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01710g01006.1	AT1G06330.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=159	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf07405g01003.1			Unknown protein		
Niben101Scf01566g00005.1	dbj|BAD66730.1|	***-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf05637g00007.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03441g01004.1	gb|KEH29588.1|	--*-	DUF4283 domain protein [Medicago truncatula]		
Niben101Scf04910g04009.1	sp|Q94HF1|EIF3K_ORYSJ	*-**	Eukaryotic translation initiation factor 3 subunit K	IPR009374 (Eukaryotic translation initiation factor 3 subunit K)	GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf04730g00004.1	ref|WP_025098503.1|	***-	2-hydroxy-acid oxidase [Burkholderia sp. A1]	IPR016164 (FAD-linked oxidase-like, C-terminal), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07109g01002.1			Unknown protein		
Niben101Scf14977g00026.1	sp|Q6AXL8|ZMAT5_DANRE	*-**	Zinc finger matrin-type protein 5	IPR000571 (Zinc finger, CCCH-type), IPR003604 (Zinc finger, U1-type), IPR013085 (Zinc finger, U1-C type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf00854g04004.1			Unknown protein		
Niben101Scf04018g12004.1	gb|KEH32482.1|	***-	plant/F27B13-30 protein [Medicago truncatula]	IPR019340 (Histone acetyltransferases subunit 3)	
Niben101Scf08478g06013.1	sp|Q9SFU3|PPA15_ARATH	****	Purple acid phosphatase 15	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf00665g00007.1	sp|Q5M7P5|NOL6_XENTR	--*-	Nucleolar protein 6		
Niben101Scf07663g01004.1	AT1G46264.1	*-**	heat shock transcription factor B4 LENGTH=348	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07451g01002.1	sp|Q6X7K0|WOX1_ARATH	***-	WUSCHEL-related homeobox 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf00797g17017.1	gb|KEH37582.1|	***-	acyl-CoA N-acyltransferase (NAT) superfamily protein [Medicago truncatula]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf03913g00008.1	sp|Q93ZY2|ROGF1_ARATH	****	Rop guanine nucleotide exchange factor 1	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf04436g02004.1	emb|CDY11183.1|	***-	BnaA03g00190D [Brassica napus]		
Niben101Scf00864g01009.1	AT4G00350.1	***-	MATE efflux family protein LENGTH=542	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02375g11001.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf02513g04002.1	sp|Q66KH2|ERGI3_XENLA	*-*-	Endoplasmic reticulum-Golgi intermediate compartment protein 3		
Niben101Scf01047g00002.1	gb|KEH27490.1|	***-	allyl alcohol dehydrogenase-like protein [Medicago truncatula]		
Niben101Scf09248g03013.1	sp|A7NY33|PER4_VITVI	****	Peroxidase 4	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04583g00007.1	AT5G03250.1	*-*-	Phototropic-responsive NPH3 family protein LENGTH=592	IPR027356 (NPH3 domain)	
Niben101Scf00854g01061.1			Unknown protein		
Niben101Scf05246g01012.1	sp|Q3JMZ7|HIS82_BURP1	*-**	Histidinol-phosphate aminotransferase 2	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03193g00006.1	sp|P37118|C71A2_SOLME	***-	Cytochrome P450 71A2	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01145g00020.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00332g06011.1	sp|Q40401|CALR_NICPL	***-	Calreticulin	IPR001580 (Calreticulin/calnexin), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005783 (endoplasmic reticulum), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf06560g01002.1	gb|AES77743.2|	****	DSBA oxidoreductase family protein [Medicago truncatula]	IPR001853 (DSBA-like thioredoxin domain), IPR012336 (Thioredoxin-like fold)	GO:0015035 (protein disulfide oxidoreductase activity)
Niben101Scf18347g00012.1			Unknown protein		
Niben101Scf12427g00005.1	AT4G35690.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=284	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf03264g05011.1	sp|P35336|PGLR_ACTDE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01434g03001.1	sp|Q41238|LOX16_SOLTU	***-	Linoleate 9S-lipoxygenase 6	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03088g03006.1	emb|CDX80212.1|	***-	BnaC09g35300D [Brassica napus]		
Niben101Scf12714g00003.1	gb|AAP54551.2|	***-	expressed protein [Oryza sativa Japonica Group] dbj|BAG95974.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEC67286.1| hypothetical protein OsJ_32111 [Oryza sativa Japonica Group]	IPR009787 (Protein jagunal)	GO:0005789 (endoplasmic reticulum membrane), GO:0007029 (endoplasmic reticulum organization)
Niben101Scf09099g00007.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf12160g00003.1	AT5G65550.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=466	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase), IPR018247 (EF-Hand 1, calcium-binding site)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01596g09001.1	AT4G14100.1	***-	transferases, transferring glycosyl groups LENGTH=206		
Niben101Scf04285g03021.1	ref|XP_007049489.1|	--*-	Homeodomain-like transcriptional regulator isoform 3 [Theobroma cacao] gb|EOX93646.1| Homeodomain-like transcriptional regulator isoform 3 [Theobroma cacao]		
Niben101Scf07849g00001.1	sp|Q10752|CDC28_SCHPO	*-**	Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28	IPR002483 (PWI domain)	GO:0006397 (mRNA processing)
Niben101Scf04764g09004.1	sp|Q6NCH9|RL28_RHOPA	*-*-	50S ribosomal protein L28	IPR001383 (Ribosomal protein L28), IPR026569 (Ribosomal protein L28/L24)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01571g01004.1	sp|B9SXY8|CSPLE_RICCO	***-	CASP-like protein 4D1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf04675g04001.1	AT5G11730.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=386	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf07826g04011.1	ref|XP_003614571.1|	--*-	Prefoldin subunit [Medicago truncatula] gb|AES97529.1| prefoldin [Medicago truncatula]		
Niben101Scf02608g01007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR023413 (Green fluorescent protein-like)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03930g03009.1	sp|Q9C8T7|PP101_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01274g04009.1	AT3G10250.1	***-	Plant protein 1589 of unknown function LENGTH=324	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf01817g00005.1	ref|WP_006101010.1|	--*-	helicase [Coleofasciculus chthonoplastes] gb|EDX75872.1| SNF2 family N-terminal domain protein [Coleofasciculus chthonoplastes PCC 7420]		
Niben101Scf01016g00001.1			Unknown protein		
Niben101Scf03599g01018.1	sp|P25070|CML24_ARATH	--**	Calcium-binding protein CML24	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf05799g01023.1	sp|A2VEA3|ARI1_BOVIN	--*-	E3 ubiquitin-protein ligase ARIH1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf02043g07005.1			Unknown protein		
Niben101Scf09044g01011.1	sp|Q9LTJ8|MBD13_ARATH	*-**	Methyl-CpG-binding domain-containing protein 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf03022g00004.1	sp|Q8H129|PPA3_ARATH	****	Purple acid phosphatase 3	IPR024927 (Acid phosphatase, type 5), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity)
Niben101Scf03400g01018.1	emb|CDY56635.1|	--*-	BnaC03g76250D [Brassica napus]		
Niben101Scf02074g02033.1			Unknown protein		
Niben101Scf06222g00007.1	ref|XP_007035689.1|	*-**	Eukaryotic translation initiation factor 3 subunit J [Theobroma cacao] gb|EOY06615.1| Eukaryotic translation initiation factor 3 subunit J [Theobroma cacao]	IPR013906 (Eukaryotic translation initiation factor 3 subunit J), IPR023194 (Eukaryotic translation initiation factor 3-like domain)	GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf05272g03004.1	sp|Q9LIC2|TMN7_ARATH	***-	Transmembrane 9 superfamily member 7	IPR004240 (Nonaspanin (TM9SF)), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane)
Niben101Scf02426g02032.1	emb|CDY01892.1|	***-	BnaC06g29320D [Brassica napus]	IPR022228 (Protein of unknown function DUF3755)	
Niben101Scf03565g04003.1	AT5G23950.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=219	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf04099g09005.1	sp|P74518|LRTA_SYNY3	***-	Light-repressed protein A homolog	IPR003489 (Ribosomal protein S30Ae/sigma 54 modulation protein)	GO:0044238 (primary metabolic process)
Niben101Scf10835g00004.1	emb|CDY28989.1|	***-	BnaC07g31950D [Brassica napus]		
Niben101Scf03050g06003.1	sp|Q67YU0|CKX5_ARATH	****	Cytokinin dehydrogenase 5	IPR016164 (FAD-linked oxidase-like, C-terminal), IPR016166 (FAD-binding, type 2), IPR016170 (Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0009690 (cytokinin metabolic process), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0019139 (cytokinin dehydrogenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03643g02059.1	sp|Q7SEK1|EIF3M_NEUCR	--*-	Eukaryotic translation initiation factor 3 subunit M		
Niben101Scf00595g02005.1	sp|Q9ZUH5|SDR2B_ARATH	*-**	Short-chain dehydrogenase/reductase 2b	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02077g12021.1	sp|Q9Y227|ENTP4_HUMAN	*-*-	Ectonucleoside triphosphate diphosphohydrolase 4	IPR000407 (Nucleoside phosphatase GDA1/CD39)	GO:0016787 (hydrolase activity)
Niben101Scf01498g12007.1	sp|Q9M2H9|MCC26_ARATH	*-*-	MATH domain and coiled-coil domain-containing protein	IPR008974 (TRAF-like)	GO:0005515 (protein binding)
Niben101Scf00991g02005.1	AT4G37650.1	****	GRAS family transcription factor LENGTH=531	IPR005202 (Transcription factor GRAS), IPR030019 (Protein short-root)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0008356 (asymmetric cell division), GO:0009956 (radial pattern formation), GO:0043565 (sequence-specific DNA binding), GO:0048366 (leaf development)
Niben101Scf06149g00022.1	sp|Q9M2J9|BET11_ARATH	***-	Bet1-like SNARE 1-1	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf06412g04018.1	AT3G26560.1	****	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004386 (helicase activity)
Niben101Scf00270g12012.1	sp|P46629|RAB25_RABIT	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf01422g01009.1	AT3G45190.1	***-	SIT4 phosphatase-associated family protein LENGTH=789	IPR007587 (SIT4 phosphatase-associated protein family), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02417g08001.1	sp|Q9T072|BH025_ARATH	*-*-	Transcription factor bHLH25	IPR002912 (ACT domain), IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0046983 (protein dimerization activity)
Niben101Scf04514g02026.1	gb|AIU50811.1|	***-	AT1G65230-like protein, partial [Solanum tuberosum]	IPR018790 (Protein of unknown function DUF2358)	
Niben101Scf07749g00006.1	sp|O64823|MCU2_ARATH	***-	Calcium uniporter protein 2, mitochondrial	IPR006769 (Coiled-coil domain containing protein 109, C-terminal)	
Niben101Scf02892g01013.1	sp|Q504M8|RAB26_MOUSE	*-*-	Ras-related protein Rab-26	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf15054g01001.1	emb|CDX72133.1|	***-	BnaC08g27410D [Brassica napus]		
Niben101Scf00058g03015.1	AT3G06270.1	****	Protein phosphatase 2C family protein LENGTH=348	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf36191g00005.1	sp|A2BN38|RS12_HYPBU	****	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf00152g03031.1	AT4G24170.1	*-**	ATP binding microtubule motor family protein LENGTH=1004	IPR001752 (Kinesin motor domain), IPR021881 (Protein of unknown function DUF3490), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf04432g00008.1	sp|B2UMY1|FTSH_AKKM8	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf19930g01008.1	ref|NP_001233978.1|	*-*-	extensin-like protein Dif54 precursor [Solanum lycopersicum] emb|CAA67814.1| extensin-like protein Dif54 [Solanum lycopersicum]		
Niben101Scf07388g00017.1	sp|Q43735|PER27_ARATH	****	Peroxidase 27	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04804g01002.1	sp|P93788|REMO_SOLTU	***-	Remorin	IPR005516 (Remorin, C-terminal), IPR005518 (Remorin, N-terminal)	
Niben101Scf00854g07054.1	sp|Q0G9U5|PSBE_DAUCA	***-	Cytochrome b559 subunit alpha	IPR006217 (Photosystem II cytochrome b559, alpha subunit)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf03734g01008.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf03226g01003.1	sp|P37821|1A1C_MALDO	***-	1-aminocyclopropane-1-carboxylate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00182g02012.1	AT5G20840.1	***-	Phosphoinositide phosphatase family protein LENGTH=831	IPR002013 (SAC domain), IPR030213 (Phosphoinositide phosphatase SAC)	GO:0007033 (vacuole organization), GO:0036092 (phosphatidylinositol-3-phosphate biosynthetic process), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf00520g13002.1	sp|Q9C6W6|TPS29_ARATH	--**	Terpenoid synthase 29	IPR001906 (Terpene synthase, N-terminal domain), IPR008949 (Isoprenoid synthase domain)	GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf02946g00004.1	emb|CDY30049.1|	***-	BnaC05g09710D [Brassica napus]		
Niben101Scf05929g02003.1	sp|Q75AA5|NTF2_ASHGO	--**	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf06710g00011.1	sp|Q8N1E6|FXL14_HUMAN	*-*-	F-box/LRR-repeat protein 14	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf39490g00020.1	ref|XP_003626920.1|	****	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf03091g00008.1	sp|Q9LVQ0|PME31_ARATH	****	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf08869g02007.1	sp|Q43007|PLDA1_ORYSJ	*-*-	Phospholipase D alpha 1	IPR015679 (Phospholipase D family)	
Niben101Scf04871g00003.1	ref|XP_007039603.1|	*-**	Plant invertase/pectin methylesterase inhibitor superfamily protein, putative [Theobroma cacao] gb|EOY24104.1| Plant invertase/pectin methylesterase inhibitor superfamily protein, putative [Theobroma cacao]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf06583g03008.1	sp|O34392|YTRE_BACSU	*-**	ABC transporter ATP-binding protein YtrE	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf07327g02001.1	AT2G46040.1	*-**	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=562	IPR000949 (ELM2 domain), IPR001606 (ARID DNA-binding domain)	GO:0003677 (DNA binding)
Niben101Scf00862g01005.1	AT3G03740.1	***-	BTB-POZ and MATH domain 4 LENGTH=465	IPR008974 (TRAF-like), IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf11774g01006.1	AT4G16580.1	***-	Protein phosphatase 2C family protein LENGTH=467	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf02358g02002.1	sp|Q9SFB5|SCP27_ARATH	****	Serine carboxypeptidase-like 27	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf20140g00001.1	sp|Q96L42|KCNH8_HUMAN	*-**	Potassium voltage-gated channel subfamily H member 8	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR013099 (Two pore domain potassium channel domain)	GO:0005249 (voltage-gated potassium channel activity), GO:0006813 (potassium ion transport), GO:0016020 (membrane)
Niben101Scf03804g01022.1	sp|Q8LLE5|FPP_SOLLC	***-	Filament-like plant protein	IPR008587 (Filament-like plant protein)	
Niben101Scf11071g02017.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00439g05006.1	sp|O74942|CYP9_SCHPO	*-**	Peptidyl-prolyl cis-trans isomerase 9	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf04875g06014.1	sp|Q9LTH8|ACH11_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 11	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01320g02014.1	AT1G65920.1	*-*-	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain LENGTH=1006	IPR000408 (Regulator of chromosome condensation, RCC1), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf02117g00002.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]		
Niben101Scf00911g01002.1			Unknown protein		
Niben101Scf06291g03002.1	sp|Q6NLB0|GSTL1_ARATH	***-	Glutathione S-transferase L1	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf07388g00019.1	sp|Q43735|PER27_ARATH	*-**	Peroxidase 27	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09767g00016.1	AT5G11950.1	*-*-	Putative lysine decarboxylase family protein LENGTH=216	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf01052g06012.1	AT4G24810.2	***-	Protein kinase superfamily protein LENGTH=481	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07610g00003.1	sp|Q9C554|EXPA1_ARATH	*-*-	Expansin-A1	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf04359g00001.1	sp|P46417|GSTX3_SOYBN	***-	Glutathione S-transferase 3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf23113g01008.1			Unknown protein		
Niben101Scf04514g00002.1	emb|CDX92307.1|	***-	BnaA05g21000D [Brassica napus]		
Niben101Scf05132g00002.1	ref|XP_002521141.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF41292.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06186g01007.1	sp|Q9FYR7|SCL8_ARATH	*-*-	Scarecrow-like protein 8	IPR005202 (Transcription factor GRAS), IPR030013 (Scarecrow-like protein 8)	
Niben101Scf05439g02061.1	sp|Q1GZL6|NUOH_METFK	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf05912g02030.1	AT5G42390.1	***-	Insulinase (Peptidase family M16) family protein LENGTH=1265	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0046872 (metal ion binding)
Niben101Scf01670g03006.1	sp|Q9LZB2|GDL74_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01276g05006.1	AT5G19290.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=330	IPR022742 (Putative lysophospholipase), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03085g00016.1	sp|Q9SVH3|PP328_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002625 (Smr protein/MutS2 C-terminal), IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain), IPR026937 (Strawberry notch, helicase C domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf07109g05003.1	dbj|GAA53750.1|	****	histone-binding protein RBBP4 [Clonorchis sinensis]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR022052 (Histone-binding protein RBBP4, N-terminal)	GO:0005515 (protein binding)
Niben101Scf07194g00011.1	sp|Q2V3N5|FB211_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR006566 (FBD domain), IPR013101 (Leucine-rich repeat 2)	GO:0005515 (protein binding)
Niben101Scf13886g01021.1	sp|Q93VJ4|BEE2_ARATH	*-*-	Transcription factor BEE 2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00705g01003.1	sp|B5YF77|ISPD_DICT6	***-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0003824 (catalytic activity), GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf03766g06009.1	emb|CDX67475.1|	***-	BnaA07g15150D [Brassica napus]	IPR026797 (HAUS augmin-like complex subunit 6), IPR028163 (HAUS augmin-like complex subunit 6, N-terminal)	GO:0051225 (spindle assembly), GO:0051297 (centrosome organization), GO:0070652 (HAUS complex)
Niben101Scf01956g01003.1	sp|P62980|RS27A_SOLLC	*-*-	Ubiquitin-40S ribosomal protein S27a	IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09760g01005.1	AT5G06130.2	*-*-	chaperone protein dnaJ-related LENGTH=315	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf08533g06003.1	sp|Q9C7C1|TET6_ARATH	***-	Tetraspanin-6	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf01044g00002.1	ref|XP_003599949.1|	--**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf02563g03006.1	AT3G50685.1	***-	unknown protein; Has 52 Blast hits to 46 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). LENGTH=158		
Niben101Scf10193g00020.1	sp|P46643|AAT1_ARATH	*-*-	Aspartate aminotransferase, mitochondrial	IPR000796 (Aspartate/other aminotransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf09552g01014.1	sp|Q93Y22|COPD_ARATH	***-	Coatomer subunit delta	IPR011012 (Longin-like domain), IPR027059 (Coatomer delta subunit), IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0006890 (retrograde vesicle-mediated transport, Golgi to ER), GO:0016192 (vesicle-mediated transport), GO:0030126 (COPI vesicle coat), GO:0030131 (clathrin adaptor complex)
Niben101Scf00144g01016.1	sp|Q9CAX1|TBL8_ARATH	***-	Protein trichome birefringence-like 8	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf04749g00009.1	sp|A2Y0J7|RU1A_ORYSI	***-	U1 small nuclear ribonucleoprotein A	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR024888 (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'')	GO:0000166 (nucleotide binding), GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0017069 (snRNA binding)
Niben101Scf08568g00002.1			Unknown protein		
Niben101Scf03377g05030.1	sp|Q9LY87|RGLG2_ARATH	*-*-	E3 ubiquitin-protein ligase RGLG2	IPR010734 (Copine)	
Niben101Scf00537g00005.1	sp|Q9SV72|EPFL9_ARATH	*-*-	EPIDERMAL PATTERNING FACTOR-like protein 9		
Niben101Scf03341g03010.1	sp|Q9M352|RL362_ARATH	***-	60S ribosomal protein L36-2	IPR000509 (Ribosomal protein L36e)	
Niben101Scf01338g07002.1	sp|O48837|LRKS2_ARATH	--*-	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05566g01004.1	AT3G01740.1	*-*-	Mitochondrial ribosomal protein L37 LENGTH=126	IPR013870 (Ribosomal protein L37, mitochondrial)	
Niben101Scf01025g05008.1	AT5G36670.1	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=1193	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf19016g00005.1	sp|Q39013|NAC2_ARATH	***-	NAC domain-containing protein 2	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00991g03011.1	sp|Q9SRW7|APK3_ARATH	****	Adenylyl-sulfate kinase 3	IPR002891 (Adenylylsulphate kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000103 (sulfate assimilation), GO:0004020 (adenylylsulfate kinase activity), GO:0005524 (ATP binding)
Niben101Scf03804g01021.1	sp|Q93ZH0|LYM1_ARATH	***-	LysM domain-containing GPI-anchored protein 1	IPR018392 (LysM domain)	
Niben101Scf03932g02005.1	AT4G18372.1	***-	Small nuclear ribonucleoprotein family protein LENGTH=112	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf02929g03008.1	ref|WP_024401120.1|	--*-	RNA-binding protein [Streptococcus suis]		
Niben101Ctg14456g00004.1	sp|Q6DAJ6|CAH_PECAS	***-	Carbonic anhydrase	IPR001148 (Alpha carbonic anhydrase), IPR023561 (Carbonic anhydrase, alpha-class)	
Niben101Ctg11998g00002.1	sp|Q9ZPY6|ARFK_ARATH	*-*-	Auxin response factor 11		
Niben101Ctg02692g00001.1	sp|Q8L5T5|LBD15_ARATH	--*-	LOB domain-containing protein 15		
Niben101Scf04643g04001.1	AT2G36870.1	****	xyloglucan endotransglucosylase/hydrolase 32 LENGTH=299	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf03881g00002.1	sp|Q9FLG1|BXL4_ARATH	***-	Beta-D-xylosidase 4	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026891 (Fibronectin type III-like domain), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04569g02006.1	sp|P13443|DHGY_CUCSA	*-*-	Glycerate dehydrogenase		
Niben101Scf02569g00026.1	gb|AGW82781.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia mollis]		
Niben101Scf02119g00018.1	AT3G09410.1	***-	Pectinacetylesterase family protein LENGTH=427	IPR004963 (Protein notum homologue), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04285g01008.1	sp|P37287|PIGA_HUMAN	***-	Phosphatidylinositol N-acetylglucosaminyltransferase subunit A	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf14937g00011.1	sp|B2U7R1|NUOA_RALPJ	****	NADH-quinone oxidoreductase subunit A	IPR000440 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf20949g00003.1			Unknown protein		
Niben101Scf03515g00048.1	sp|Q0G9L9|PSAA_LIRTU	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf03953g01007.1	sp|P84976|GRP2_POPEU	--**	Glycine-rich RNA-binding protein 2 (Fragments)	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01678g04008.1	sp|Q99439|CNN2_HUMAN	--*-	Calponin-2	IPR001715 (Calponin homology domain)	GO:0005515 (protein binding)
Niben101Scf11037g02007.1	sp|Q9LUG9|MD33A_ARATH	***-	Mediator of RNA polymerase II transcription subunit 33A		
Niben101Scf00899g00001.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04686g02015.1	sp|B2IP53|PFKA_STRPS	****	ATP-dependent 6-phosphofructokinase	IPR000023 (Phosphofructokinase domain), IPR022953 (Phosphofructokinase)	GO:0003872 (6-phosphofructokinase activity), GO:0006002 (fructose 6-phosphate metabolic process), GO:0006096 (glycolytic process)
Niben101Ctg07025g00001.1	ref|XP_007024805.1|	*-*-	RING/U-box superfamily protein, putative [Theobroma cacao] gb|EOY27427.1| RING/U-box superfamily protein, putative [Theobroma cacao]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04053g02006.1	sp|A8S6B6|CRVP_AUSSU	***-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf00611g04005.1	AT5G57070.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=575	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf06221g04003.1	sp|Q8HQQ2|MATK_PINDE	--*-	Maturase K	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf05419g00005.1	sp|P74367|PSB27_SYNY3	****	Photosystem II lipoprotein Psb27	IPR025585 (Photosystem II Pbs27)	GO:0010207 (photosystem II assembly)
Niben101Scf04339g03006.1	AT4G21750.1	*-**	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=762	IPR002913 (START domain)	GO:0008289 (lipid binding)
Niben101Scf09133g03013.1	AT3G59700.1	****	lectin-receptor kinase LENGTH=661	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Ctg11222g00002.1	sp|Q9SEH5|PMT3_TOBAC	*-*-	Putrescine N-methyltransferase 3		
Niben101Scf12714g00001.1	sp|O82504|RDR2_ARATH	****	RNA-dependent RNA polymerase 2	IPR007855 (RNA-dependent RNA polymerase, eukaryotic-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003968 (RNA-directed RNA polymerase activity)
Niben101Scf00687g03001.1	emb|CDY20964.1|	***-	BnaA08g25610D [Brassica napus]		
Niben101Scf04018g04009.1	sp|Q8L8A6|GRF5_ARATH	*-*-	Growth-regulating factor 5	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf03252g02001.1	sp|Q8GYY1|HSFA3_ARATH	*-*-	Heat stress transcription factor A-3		
Niben101Scf05488g00005.1	sp|Q94AI4|METL1_ARATH	****	Methyltransferase-like protein 1	IPR002052 (DNA methylase, N-6 adenine-specific, conserved site), IPR007757 (MT-A70-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf07451g01004.1	AT1G73590.1	***-	Auxin efflux carrier family protein LENGTH=622	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf08684g02002.1	ref|XP_007023638.1|	-**-	To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao] gb|EOY26260.1| To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao]		
Niben101Scf01517g08006.1	AT5G04700.1	*-*-	Ankyrin repeat family protein LENGTH=669		
Niben101Scf02375g11003.1	sp|Q66HG1|DMTF1_RAT	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf36271g00001.1	gb|ABF93550.1|	*-*-	expressed protein [Oryza sativa Japonica Group]	IPR018960 (Domain of unknown function DUF1990)	
Niben101Scf00711g04005.1	AT5G04060.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=600	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02562g00021.1	sp|Q70XY9|PSBE_AMBTC	***-	Cytochrome b559 subunit alpha	IPR013081 (Photosystem II cytochrome b559, N-terminal)	GO:0015979 (photosynthesis)
Niben101Scf03275g00011.1	sp|Q9SJU5|BBX18_ARATH	*-**	B-box zinc finger protein 18	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf00046g04012.1	AT1G67850.1	***-	Protein of unknown function (DUF707) LENGTH=404	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf04209g01006.1			Unknown protein		
Niben101Scf00466g00009.1	ref|XP_002512992.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF49495.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03439g02021.1			Unknown protein		
Niben101Scf03607g00011.1	sp|Q9SVP7|PP307_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf11389g00006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02074g03018.1	ref|XP_002535265.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF27117.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00442g10003.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf15817g02001.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf18551g00017.1	sp|Q96300|14337_ARATH	***-	14-3-3-like protein GF14 nu	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf05051g01006.1	sp|O08467|GLNA_THEKO	*-*-	Glutamine synthetase	IPR006992 (Amidohydrolase 2), IPR014746 (Glutamine synthetase/guanido kinase, catalytic domain)	GO:0003824 (catalytic activity), GO:0004356 (glutamate-ammonia ligase activity), GO:0006807 (nitrogen compound metabolic process), GO:0008152 (metabolic process)
Niben101Scf01249g03012.1	AT2G27660.1	*-*-	Cysteine/Histidine-rich C1 domain family protein LENGTH=718	IPR011424 (C1-like)	GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02337g00003.1	sp|Q93Z00|TCP14_ARATH	--*-	Transcription factor TCP14		
Niben101Scf03738g03007.1	AT3G53950.1	*-*-	glyoxal oxidase-related protein LENGTH=545	IPR014756 (Immunoglobulin E-set)	
Niben101Scf00713g02004.1	sp|P73314|RS3_SYNY3	--*-	30S ribosomal protein S3	IPR001351 (Ribosomal protein S3, C-terminal)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01580g01009.1	AT1G76130.1	****	alpha-amylase-like 2 LENGTH=413	IPR015902 (Glycoside hydrolase, family 13)	GO:0003824 (catalytic activity), GO:0004556 (alpha-amylase activity), GO:0005509 (calcium ion binding), GO:0005975 (carbohydrate metabolic process), GO:0043169 (cation binding)
Niben101Scf07474g01012.1			Unknown protein		
Niben101Scf04640g03007.1	gb|ABK81207.1|	***-	DOG1 alpha splice variant [Arabidopsis thaliana]	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01154g06001.1	gb|KEH39600.1|	***-	embryo-specific protein [Medicago truncatula]	IPR010417 (Embryo-specific 3)	
Niben101Scf00527g01005.1	sp|P62302|RS13_SOYBN	***-	40S ribosomal protein S13	IPR000589 (Ribosomal protein S15), IPR012606 (Ribosomal protein S13/S15, N-terminal)	
Niben101Scf01108g06011.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf01500g01006.1	AT4G16790.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=473		
Niben101Scf06394g04012.1	AT2G01190.1	*-*-	Octicosapeptide/Phox/Bem1p family protein LENGTH=720	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf02562g01012.1	sp|Q93V93|PER44_ARATH	****	Peroxidase 44	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00893g00002.1	ref|XP_007042165.1|	*-*-	Adenine nucleotide alpha hydrolases-like superfamily protein isoform 1 [Theobroma cacao] gb|EOX97996.1| Adenine nucleotide alpha hydrolases-like superfamily protein isoform 1 [Theobroma cacao]		
Niben101Scf03203g10001.1	AT2G37740.1	*-*-	zinc-finger protein 10 LENGTH=304	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf09455g01006.1	ref|XP_002526794.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35600.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02736g03003.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf06361g07009.1	sp|C5M3V6|MIC60_CANTT	--*-	MICOS complex subunit MIC60	IPR019133 (Mitochondrial inner membrane protein Mitofilin)	
Niben101Scf07115g00008.1	sp|Q9FXJ1|GDL6_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf01191g01009.1	AT1G54940.1	*-*-	plant glycogenin-like starch initiation protein 4 LENGTH=557		
Niben101Scf03949g07018.1	sp|Q9LL85|WHY1_SOLTU	****	Single-stranded DNA-binding protein WHY1, chloroplastic	IPR013742 (Plant transcription factor)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02066g02003.1	sp|Q9FFY9|TRP4_ARATH	*-**	Telomere repeat-binding protein 4	IPR009057 (Homeodomain-like), IPR029071 (Ubiquitin-related domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf02816g16025.1	gb|KEH19038.1|	****	brefeldin A-inhibited guanine nucleotide-exchange protein [Medicago truncatula]	IPR000904 (Sec7 domain), IPR011992 (EF-hand domain pair), IPR016024 (Armadillo-type fold), IPR023394 (Sec7 domain, alpha orthogonal bundle)	GO:0005086 (ARF guanyl-nucleotide exchange factor activity), GO:0005488 (binding), GO:0005509 (calcium ion binding), GO:0032012 (regulation of ARF protein signal transduction)
Niben101Scf05926g01002.1	sp|A3CT12|RS8_METMJ	***-	30S ribosomal protein S8	IPR000630 (Ribosomal protein S8)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf14338g02003.1	sp|Q1RHB9|SDHA_RICBR	***-	Succinate dehydrogenase flavoprotein subunit	IPR003953 (FAD binding domain), IPR015939 (Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal), IPR027477 (Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08782g02016.1	ref|XP_007051046.1|	***-	P-loop containing nucle [Theobroma cacao]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf21684g00010.1	gb|KEH23297.1|	***-	ATP synthase D chain-like protein, putative [Medicago truncatula]		
Niben101Scf05850g00006.1	ref|XP_007016026.1|	*-*-	C-terminal isoform 3 [Theobroma cacao] gb|EOY33645.1| C-terminal isoform 3 [Theobroma cacao]		
Niben101Scf02688g01025.1	AT1G20480.1	*-*-	AMP-dependent synthetase and ligase family protein LENGTH=565	IPR000873 (AMP-dependent synthetase/ligase), IPR009081 (Acyl carrier protein-like), IPR011004 (Trimeric LpxA-like), IPR011614 (Catalase core domain), IPR020835 (Catalase-like domain)	GO:0003824 (catalytic activity), GO:0004096 (catalase activity), GO:0008152 (metabolic process), GO:0020037 (heme binding), GO:0031177 (phosphopantetheine binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00487g01008.1			Unknown protein		
Niben101Scf07436g00002.1	AT1G65730.1	***-	YELLOW STRIPE like 7 LENGTH=688	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf06081g02017.1	sp|P57723|PCBP4_HUMAN	--**	Poly(rC)-binding protein 4	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf05688g08010.1	AT1G56190.1	****	Phosphoglycerate kinase family protein LENGTH=478	IPR001576 (Phosphoglycerate kinase)	GO:0004618 (phosphoglycerate kinase activity), GO:0006096 (glycolytic process)
Niben101Scf01958g04001.1			Unknown protein		
Niben101Scf03867g02042.1	sp|Q9SA16|P2A09_ARATH	*-*-	Protein PHLOEM PROTEIN 2-LIKE A9	IPR025886 (Phloem protein 2-like)	
Niben101Scf02655g01001.1	ref|XP_002514354.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF48308.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07519g00002.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf11312g01002.1	sp|O15116|LSM1_HUMAN	*-*-	U6 snRNA-associated Sm-like protein LSm1	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf00167g00033.1	sp|A3DJI8|RL18_CLOTH	--*-	50S ribosomal protein L18	IPR005484 (Ribosomal protein L18/L5)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02156g03004.1	sp|Q8GWK2|AP2L4_ARATH	****	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03111g01020.1	sp|Q9SCW1|BGAL1_ARATH	*-*-	Beta-galactosidase 1	IPR001944 (Glycoside hydrolase, family 35)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf21920g00007.1	sp|P22806|BIOF_LYSSH	***-	8-amino-7-oxononanoate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf18639g00026.1	AT5G23060.1	***-	calcium sensing receptor LENGTH=387	IPR001763 (Rhodanese-like domain)	
Niben101Scf00273g01008.1			Unknown protein		
Niben101Scf02294g00009.1	sp|Q9Y933|GUAA_AERPE	*-*-	GMP synthase [glutamine-hydrolyzing]	IPR029062 (Class I glutamine amidotransferase-like)	
Niben101Scf02929g04005.1			Unknown protein		
Niben101Scf04073g00004.1	sp|A6MZM2|SUI1_ORYSI	****	Protein translation factor SUI1 homolog	IPR005874 (Eukaryotic translation initiation factor SUI1)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf03064g02020.1			Unknown protein		
Niben101Scf02139g06009.1	AT1G23480.1	***-	cellulose synthase-like A3 LENGTH=556	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf05644g01017.1	sp|P73456|FTSZ_SYNY3	*-*-	Cell division protein FtsZ	IPR008280 (Tubulin/FtsZ, C-terminal)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0006184 (GTP catabolic process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Ctg09119g00002.1	AT5G60680.1	***-	Protein of unknown function, DUF584 LENGTH=163	IPR007608 (Senescence regulator S40)	
Niben101Scf06375g02004.1	sp|A9KN01|GPMA_CLOPH	****	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0004619 (phosphoglycerate mutase activity), GO:0006096 (glycolytic process), GO:0008152 (metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf02043g05001.1	sp|O80452|AMPD_ARATH	*-**	AMP deaminase	IPR006329 (AMP deaminase)	GO:0003876 (AMP deaminase activity), GO:0009168 (purine ribonucleoside monophosphate biosynthetic process), GO:0019239 (deaminase activity), GO:0032264 (IMP salvage)
Niben101Scf06024g00001.1	sp|Q641A1|GLD2A_XENLA	*-*-	Poly(A) RNA polymerase GLD2-A	IPR002058 (PAP/25A-associated)	
Niben101Scf13185g01009.1	sp|B2UMH5|SUCC_AKKM8	--*-	Succinyl-CoA ligase [ADP-forming] subunit beta	IPR005809 (Succinyl-CoA synthetase, beta subunit)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0008152 (metabolic process)
Niben101Scf02665g07008.1	sp|Q8L7Y9|NPC1_ARATH	***-	Non-specific phospholipase C1	IPR007312 (Phosphoesterase), IPR017850 (Alkaline-phosphatase-like, core domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00663g01002.1	gb|ABX46134.1|	***-	blight-associated protein P12, partial [Citrus unshiu]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf04650g05003.1			Unknown protein		
Niben101Scf05009g02009.1	sp|Q9Z1A9|TBCD8_MOUSE	*-*-	TBC1 domain family member 8	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf01319g07003.1	sp|P83332|TLP1_PRUPE	***-	Thaumatin-like protein 1	IPR001938 (Thaumatin)	
Niben101Scf07969g01027.1	sp|Q9XIE6|ALA3_ARATH	*-*-	Phospholipid-transporting ATPase 3		
Niben101Scf00897g02011.1	sp|Q87G18|LLDD_VIBPA	***-	L-lactate dehydrogenase	IPR012133 (Alpha-hydroxy acid dehydrogenase, FMN-dependent), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04654g03010.1	AT5G62920.1	***-	response regulator 6 LENGTH=186	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf03911g00007.1	AT1G30950.1	***-	F-box family protein LENGTH=442	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf00012g00011.1	sp|O24340|FPF1_SINAL	***-	Flowering-promoting factor 1		
Niben101Scf02842g01017.1	sp|Q8GYA6|PS13B_ARATH	***-	26S proteasome non-ATPase regulatory subunit 13 homolog B	IPR000717 (Proteasome component (PCI) domain)	GO:0005515 (protein binding)
Niben101Ctg14444g00003.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03923g07001.1	gb|ABG37650.2|	--*-	CCHC-type integrase [Populus trichocarpa]		
Niben101Scf05461g00003.1	sp|Q84WP6|NAC43_ARATH	***-	NAC domain-containing protein 43	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08884g00011.1	emb|CDY68159.1|	***-	BnaA07g38920D [Brassica napus]		
Niben101Scf01761g05001.1	sp|B7ZUF3|SETD3_XENTR	***-	Histone-lysine N-methyltransferase setd3	IPR015353 (Rubisco LSMT, substrate-binding domain)	
Niben101Scf04328g00052.1	sp|Q6EM56|RR7_STEPS	*-**	30S ribosomal protein S7, chloroplastic	IPR000235 (Ribosomal protein S5/S7), IPR006032 (Ribosomal protein S12/S23), IPR023798 (Ribosomal protein S7 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf07069g00003.1	sp|Q8L7L1|SPHK1_ARATH	****	Sphingosine kinase 1	IPR001206 (Diacylglycerol kinase, catalytic domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf05108g02018.1	sp|Q3T062|RRP15_BOVIN	--*-	RRP15-like protein	IPR012459 (Protein of unknown function DUF1665)	
Niben101Scf04875g00018.1	sp|P0CD30|NU2C1_PIPCE	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf02145g07004.1	AT1G11925.1	***-	Stigma-specific Stig1 family protein LENGTH=140	IPR006969 (Stigma-specific protein Stig1)	
Niben101Scf00055g00009.1	sp|Q7ZWN4|MIDNA_XENLA	--*-	Midnolin-A	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf07437g02007.1	ref|XP_002520205.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF42260.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf00964g02003.1			Unknown protein		
Niben101Scf04732g00016.1	AT5G12180.1	****	calcium-dependent protein kinase 17 LENGTH=528	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02385g00007.1	sp|P81393|MYB08_ANTMA	***-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf09589g00008.1	AT5G60870.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=445	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf02837g03007.1	sp|C1DEF4|SYM_AZOVD	--**	Methionine--tRNA ligase	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0000049 (tRNA binding)
Niben101Scf09241g00005.1	sp|P56331|IF1A_ONOVI	****	Eukaryotic translation initiation factor 1A	IPR001253 (Translation initiation factor 1A (eIF-1A))	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf02657g01004.1	sp|O49250|CYCLD_ANTMA	*-*-	Transcription factor CYCLOIDEA	IPR005333 (Transcription factor, TCP)	
Niben101Scf04934g00004.1	gb|AAU89199.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf02608g03013.1	sp|Q2T9P4|NASP_BOVIN	*-*-	Nuclear autoantigenic sperm protein	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf34081g00007.1	sp|Q9ZPW2|APC10_ARATH	***-	Anaphase-promoting complex subunit 10	IPR004939 (Anaphase-promoting complex, subunit 10/DOC domain), IPR008979 (Galactose-binding domain-like)	
Niben101Scf00700g06003.1	sp|B3CMS0|RNC_WOLPP	--*-	Ribonuclease 3	IPR014720 (Double-stranded RNA-binding domain)	
Niben101Scf00571g04016.1	gb|KEH31169.1|	*-*-	transmembrane protein, putative [Medicago truncatula]	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf01154g11002.1	gb|ABA94593.2|	*-*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf01514g04010.1	sp|P30176|YBIA_ECOLI	***-	Swarming motility protein YbiA	IPR012816 (Conserved hypothetical protein CHP02464)	
Niben101Scf04457g04009.1	AT3G18490.1	***-	Eukaryotic aspartyl protease family protein LENGTH=500	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00712g10007.1	gb|KEH42602.1|	-***	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf09644g00017.1	sp|P40973|PLY_LILLO	****	Pectate lyase	IPR007524 (Pectate lyase, N-terminal), IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	GO:0030570 (pectate lyase activity)
Niben101Scf01189g04012.1	ref|WP_007527442.1|	***-	glutamine amidotransferase [Desulfovibrio sp. A2] gb|EGY24267.1| intracellular protease, PfpI family protein [Desulfovibrio sp. A2]	IPR006286 (Peptidase C56, PfpI), IPR029062 (Class I glutamine amidotransferase-like)	GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf04107g00015.1	sp|Q47LM6|RS9_THEFY	***-	30S ribosomal protein S9	IPR000754 (Ribosomal protein S9), IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01606g02018.1	sp|Q47DJ8|MUTS_DECAR	*-**	DNA mismatch repair protein MutS	IPR005747 (Endonuclease MutS2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0016887 (ATPase activity), GO:0030983 (mismatched DNA binding), GO:0045910 (negative regulation of DNA recombination)
Niben101Scf07320g00016.1	sp|P92962|PROT2_ARATH	***-	Proline transporter 2	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf02849g05002.1	sp|O48723|PLP2_ARATH	***-	Patatin-like protein 2	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf22538g00001.1	AT5G13810.1	***-	Glutaredoxin family protein LENGTH=274	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf04723g00007.1	sp|Q9FMZ0|BKI1_ARATH	--*-	BRI1 kinase inhibitor 1		
Niben101Scf11778g01014.1	ref|WP_008205648.1|	****	protein tyr -tyrosine-phosphatase [Microcystis sp. T1-4]	IPR017867 (Protein-tyrosine phosphatase, low molecular weight), IPR023485 (Phosphotyrosine protein phosphatase I superfamily)	GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf02541g07003.1	AT1G61870.1	***-	pentatricopeptide repeat 336 LENGTH=408	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01888g05011.1	ref|YP_006291825.1|	--*-	orf57 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81202.1| orf57 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf02420g06007.1	gb|KEH26500.1|	***-	cell cycle regulated microtubule associated protein [Medicago truncatula]	IPR027330 (TPX2 central domain)	
Niben101Scf06023g03017.1			Unknown protein		
Niben101Scf01024g04002.1	gb|KEH39046.1|	***-	wound-responsive family protein [Medicago truncatula]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf05041g04001.1	sp|O23624|FPF1_ARATH	***-	Flowering-promoting factor 1		
Niben101Scf22416g00003.1	AT2G01480.1	*-*-	O-fucosyltransferase family protein LENGTH=567	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf00023g05010.1	sp|O48766|GUN11_ARATH	***-	Endoglucanase 11	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf10268g00002.1	sp|E2RQ15|RAB25_CANFA	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf03599g01017.1	sp|P73548|CDSA_SYNY3	***-	Phosphatidate cytidylyltransferase	IPR000374 (Phosphatidate cytidylyltransferase)	GO:0016020 (membrane), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02066g04005.1	AT3G16857.2	***-	response regulator 1 LENGTH=690	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily), IPR017053 (Response regulator, plant B-type)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03278g07004.1	tpg|DAA36985.1|	*-*-	TPA: hypothetical protein ZEAMMB73_386837 [Zea mays]	IPR006968 (Root UVB sensitive family)	
Niben101Scf02074g02034.1			Unknown protein		
Niben101Scf03491g01017.1	sp|P27880|HSP12_MEDSA	***-	18.2 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf08653g04009.1	sp|Q9FXD6|ARR11_ARATH	*-*-	Two-component response regulator ARR11	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding)
Niben101Scf09867g01012.1	ref|NP_001048843.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAF10757.1| [Oryza sativa Japonica Group]		
Niben101Scf06222g00008.1	sp|F4I507|MYO3_ARATH	*-*-	Myosin-3	IPR000048 (IQ motif, EF-hand binding site), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf07825g05007.1	sp|Q5NBP9|GLU2B_ORYSJ	***-	Glucosidase 2 subunit beta	IPR002172 (Low-density lipoprotein (LDL) receptor class A repeat), IPR028146 (Glucosidase II beta subunit, N-terminal)	GO:0005515 (protein binding)
Niben101Scf08273g02004.1	AT5G04330.1	***-	Cytochrome P450 superfamily protein LENGTH=512	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf19230g01024.1	sp|P54122|RNJ_CORGL	***-	Ribonuclease J	IPR004613 (Ribonuclease J), IPR009057 (Homeodomain-like), IPR011108 (RNA-metabolising metallo-beta-lactamase)	GO:0003677 (DNA binding), GO:0003723 (RNA binding), GO:0004519 (endonuclease activity), GO:0046872 (metal ion binding)
Niben101Scf02486g06012.1	sp|Q7FNS8|PSAI_ATRBE	****	Photosystem I reaction center subunit VIII	IPR001302 (Photosystem I PsaI, reaction centre subunit VIII)	GO:0009522 (photosystem I), GO:0015979 (photosynthesis)
Niben101Scf10811g00004.1	emb|CDY67385.1|	--*-	BnaAnng24170D [Brassica napus]		
Niben101Scf07247g04009.1	sp|P0CD52|NU2C1_SPIOL	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic		
Niben101Scf08227g00004.1	sp|P93005|PP181_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00338g06008.1			Unknown protein		
Niben101Scf01534g02025.1			Unknown protein		
Niben101Scf01817g00006.1			Unknown protein		
Niben101Scf08263g01003.1	AT3G52060.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=346	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf08707g01007.1	ref|XP_003599472.1|	*-*-	Defensin-like protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf02164g06012.1	AT1G58250.2	*-*-	Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain LENGTH=2655		
Niben101Scf04845g00010.1	gb|KFF77694.1|	***-	gluconolaconase [Serratia marcescens]	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf06394g05004.1	sp|Q9SMP0|NFYC1_ARATH	*-*-	Nuclear transcription factor Y subunit C-1	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf06812g00002.1	sp|O64823|MCU2_ARATH	***-	Calcium uniporter protein 2, mitochondrial	IPR006769 (Coiled-coil domain containing protein 109, C-terminal)	
Niben101Scf07027g00009.1	sp|Q9FGV1|ARFH_ARATH	****	Auxin response factor 8	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf00579g02005.1	AT5G37740.2	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=178	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf08430g00008.1	sp|Q9SMU7|SRP09_ARATH	****	Signal recognition particle 9 kDa protein	IPR008832 (Signal recognition particle, SRP9 subunit), IPR009018 (Signal recognition particle, SRP9/SRP14 subunit)	GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0045900 (negative regulation of translational elongation), GO:0048500 (signal recognition particle)
Niben101Scf03555g02009.1	AT2G04235.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 713 Blast hits to 345 proteins in 122 species: Archae - 2; Bacteria - 262; Metazoa - 138; Fungi - 55; Plants - 39; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink). LENGTH=1253		
Niben101Scf07823g00016.1	AT4G28220.1	***-	NAD(P)H dehydrogenase B1 LENGTH=571	IPR001327 (Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain), IPR011992 (EF-hand domain pair), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0005509 (calcium ion binding), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05197g01007.1	ref|XP_003602207.1|	*-**	Poly(A) RNA polymerase cid14 [Medicago truncatula] gb|AES72458.1| nucleotidyltransferase [Medicago truncatula]	IPR002934 (Nucleotidyl transferase domain)	GO:0016779 (nucleotidyltransferase activity)
Niben101Scf01526g08008.1	AT5G46640.1	***-	AT hook motif DNA-binding family protein LENGTH=386	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf01641g00002.1	sp|Q9SKQ4|PP167_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08137g02017.1	gb|ADV29615.1|	*-*-	At5g37260-like protein [Solanum arcanum]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02223g02002.1	AT3G18590.1	***-	early nodulin-like protein 5 LENGTH=188	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf08870g02014.1	sp|Q41073|NLTP_PINTA	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf05961g01015.1	emb|CDY00054.1|	***-	BnaC09g02470D [Brassica napus]		
Niben101Scf01037g01005.1	sp|Q9LFQ3|SNL2_ARATH	*-*-	Paired amphipathic helix protein Sin3-like 2	IPR003822 (Paired amphipathic helix)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08127g03003.1	sp|Q9Y6K1|DNM3A_HUMAN	--**	DNA (cytosine-5)-methyltransferase 3A	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006306 (DNA methylation)
Niben101Scf02160g06066.1	sp|Q09G46|PSAA_PLAOC	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf13029g03022.1	AT3G44610.1	****	Protein kinase superfamily protein LENGTH=451	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain), IPR011009 (Protein kinase-like domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004871 (signal transducer activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01548g00011.1	dbj|BAA96881.1|	*-*-	mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf00508g03001.1	sp|Q5ZC82|LOG_ORYSJ	***-	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf03706g03010.1	sp|Q6PJ69|TRI65_HUMAN	*-*-	Tripartite motif-containing protein 65	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04223g01042.1			Unknown protein		
Niben101Scf03221g01012.1	sp|O23491|PP315_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR017451 (F-box associated interaction domain)	
Niben101Scf00401g01012.1	AT5G58430.1	****	exocyst subunit exo70 family protein B1 LENGTH=624	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf10650g00010.1	sp|P51615|MAOX_VITVI	*-*-	NADP-dependent malic enzyme	IPR016040 (NAD(P)-binding domain)	GO:0004471 (malate dehydrogenase (decarboxylating) (NAD+) activity), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf12589g00034.1	sp|Q1IDV1|KAD_PSEE4	--*-	Adenylate kinase	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf21125g00005.1	sp|Q54GX7|ACT10_DICDI	****	Actin-10	IPR004000 (Actin family)	GO:0005524 (ATP binding), GO:0005856 (cytoskeleton), GO:0005885 (Arp2/3 protein complex), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf00069g04005.1	sp|Q3K1K2|GLGA_STRA1	--*-	Glycogen synthase		
Niben101Scf08029g02013.1	sp|P19524|MYO2_YEAST	--*-	Myosin-2		
Niben101Scf31398g00007.1	sp|Q9FJ40|GDL86_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01964g12005.1	sp|Q9LSN7|BH147_ARATH	*-*-	Transcription factor bHLH147	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01436g00001.1	ref|XP_002509463.1|	*-**	structural constituent of cell wall, putative [Ricinus communis] gb|EEF50850.1| structural constituent of cell wall, putative [Ricinus communis]	IPR003882 (Pistil-specific extensin-like protein), IPR006041 (Pollen Ole e 1 allergen/extensin)	GO:0005199 (structural constituent of cell wall)
Niben101Scf09217g00021.1	AT3G03210.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 59 Blast hits to 59 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). LENGTH=368	IPR026057 (PC-Esterase)	
Niben101Scf35862g00006.1	sp|Q5RC80|RBM39_PONAB	--**	RNA-binding protein 39	IPR001876 (Zinc finger, RanBP2-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf10132g01026.1	AT5G14580.1	****	polyribonucleotide nucleotidyltransferase, putative LENGTH=991	IPR012162 (Polyribonucleotide nucleotidyltransferase), IPR027408 (PNPase/RNase PH domain)	GO:0000175 (3'-5'-exoribonuclease activity), GO:0003723 (RNA binding), GO:0004654 (polyribonucleotide nucleotidyltransferase activity), GO:0006396 (RNA processing), GO:0006402 (mRNA catabolic process)
Niben101Scf01392g01023.1	sp|Q9T095|OPT6_ARATH	***-	Oligopeptide transporter 6	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf00278g11001.1	sp|P51513|NOVA1_HUMAN	*-**	RNA-binding protein Nova-1	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf10730g00001.1	emb|CDY66926.1|	***-	BnaA03g57090D [Brassica napus]		
Niben101Scf07393g00029.1	AT5G22840.1	****	Protein kinase superfamily protein LENGTH=538	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05108g02019.1	AT3G07640.1	***-	unknown protein; Has 27 Blast hits to 27 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=241		
Niben101Scf06974g00001.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07614g00005.1	AT2G16770.1	****	Basic-leucine zipper (bZIP) transcription factor family protein LENGTH=249	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf15972g01018.1	sp|Q6NYV9|LEO1_DANRE	*-*-	RNA polymerase-associated protein LEO1	IPR007149 (Leo1-like protein)	
Niben101Scf16733g01014.1	sp|P0A9P7|DEAD_ECOL6	--**	ATP-dependent RNA helicase DeaD	IPR001650 (Helicase, C-terminal), IPR006846 (Ribosomal protein S30), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR018973 (DEAD/DEAH-box helicase, putative), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029071 (Ubiquitin-related domain)	GO:0003676 (nucleic acid binding), GO:0003735 (structural constituent of ribosome), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02074g06022.1	sp|Q8XLE8|CAPPA_CLOPE	--*-	Phosphoenolpyruvate carboxylase		
Niben101Scf07882g01009.1	sp|A2YEZ6|SAP8_ORYSI	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	IPR000058 (Zinc finger, AN1-type), IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf05047g04011.1	ref|XP_007018667.1|	****	Phot isoform 1 [Theobroma cacao]	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf05931g03010.1	emb|CDY57650.1|	***-	BnaAnng14910D [Brassica napus]		
Niben101Scf03819g01016.1	sp|Q9LF33|UGDH3_ARATH	****	UDP-glucose 6-dehydrogenase 3	IPR017476 (UDP-glucose/GDP-mannose dehydrogenase)	GO:0003979 (UDP-glucose 6-dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01460g04014.1	AT1G22970.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=357	IPR026907 (Cyclin-D1-binding protein 1)	GO:0051726 (regulation of cell cycle)
Niben101Scf02542g01002.1	gb|ABF97674.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf02563g06017.1	sp|A4YHP1|RNZ_METS5	--*-	Ribonuclease Z	IPR001279 (Beta-lactamase-like)	
Niben101Scf02917g00002.1	sp|O24160|TGA21_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain), IPR029803 (Protein ABSCISIC ACID-INSENSITIVE 5)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009737 (response to abscisic acid), GO:0043565 (sequence-specific DNA binding), GO:0045893 (positive regulation of transcription, DNA-templated)
Niben101Scf03203g11001.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf03278g06011.1	emb|CDX90122.1|	***-	BnaA08g18620D [Brassica napus]	IPR026960 (Reverse transcriptase zinc-binding domain)	
Niben101Scf05372g01011.1	sp|P46279|RPB7_SOYBN	****	DNA-directed RNA polymerase II subunit RPB7	IPR005576 (RNA polymerase Rpb7, N-terminal), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf05808g00006.1			Unknown protein		
Niben101Scf09599g00009.1	AT1G10657.1	***-	Plant protein 1589 of unknown function LENGTH=125	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf03985g04023.1	ref|XP_001288151.1|	--*-	ankyrin repeat protein [Trichomonas vaginalis G3] gb|EAX75221.1| ankyrin repeat protein, putative [Trichomonas vaginalis G3]		
Niben101Scf02063g08003.1	sp|Q9QXN3|TRIP4_MOUSE	*-*-	Activating signal cointegrator 1	IPR015947 (PUA-like domain)	
Niben101Scf04073g00005.1	ref|XP_002869579.1|	****	rab GTPase activator [Arabidopsis lyrata subsp. lyrata] gb|EFH45838.1| rab GTPase activator [Arabidopsis lyrata subsp. lyrata]	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf02043g04020.1	AT5G39950.1	***-	thioredoxin 2 LENGTH=133	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf11182g00003.1	sp|Q9C9G4|ENDO2_ARATH	****	Endonuclease 2	IPR003154 (S1/P1 nuclease), IPR008947 (Phospholipase C/P1 nuclease domain)	GO:0003676 (nucleic acid binding), GO:0004519 (endonuclease activity), GO:0006308 (DNA catabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02408g04002.1	sp|Q3ZXR7|NUOH_DEHMC	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf01191g03009.1	sp|Q9FWA6|PP207_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04294g01002.1	sp|O23006|LYM2_ARATH	***-	LysM domain-containing GPI-anchored protein 2	IPR018392 (LysM domain)	
Niben101Scf02270g00005.1	gb|ABR25403.1|	****	transferase (transferring glycosyl group) [Oryza sativa Indica Group]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf10476g06006.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05188g02013.1	AT4G13400.1	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=357	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00428g09005.1	AT1G73805.1	***-	Calmodulin binding protein-like LENGTH=451	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf01272g01010.1	ref|XP_002518781.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF43706.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf01382g01006.1	sp|G5CEW6|IF4G_WHEAT	*-*-	Eukaryotic translation initiation factor 4G	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00892g00017.1	sp|Q9ZQX4|VATF_ARATH	****	V-type proton ATPase subunit F	IPR008218 (ATPase, V1 complex, subunit F)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033180 (proton-transporting V-type ATPase, V1 domain), GO:0034220 (ion transmembrane transport), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf12526g00015.1	AT2G17500.1	***-	Auxin efflux carrier family protein LENGTH=396	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01269g13031.1	gb|AFI44305.1|	*-*-	DNA polymerase (mitochondrion) [Silene vulgaris]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf00460g04029.1	AT5G27010.1	***-	ARM repeat superfamily protein LENGTH=863		
Niben101Scf01789g01001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00457g03011.1	sp|P08451|FER2_SYNP6	***-	Ferredoxin-2	IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf07030g00015.1			Unknown protein		
Niben101Scf10188g05002.1	gb|KEH39046.1|	***-	wound-responsive family protein [Medicago truncatula]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf02217g06007.1	AT3G13340.1	*-*-	Transducin/WD40 repeat-like superfamily protein LENGTH=447		
Niben101Scf02085g10003.1	sp|Q9LZQ1|TBL6_ARATH	*-*-	Protein trichome birefringence-like 6	IPR026057 (PC-Esterase)	
Niben101Scf01116g01005.1	gb|AES67762.2|	*-*-	aleurone layer morphogenesis protein [Medicago truncatula]		
Niben101Scf02538g07010.1	AT1G15125.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=351	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf08355g04001.1	sp|Q99KK1|REEP3_MOUSE	*-*-	Receptor expression-enhancing protein 3	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf03492g02008.1	sp|Q86VZ2|WDR5B_HUMAN	***-	WD repeat-containing protein 5B	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf03374g06010.1	sp|B5XAM2|ICT1_SALSA	*-*-	Peptidyl-tRNA hydrolase ICT1, mitochondrial		
Niben101Scf00929g03008.1	sp|Q8LFA9|METL2_ARATH	****	Methyltransferase-like protein 2	IPR007757 (MT-A70-like)	GO:0006139 (nucleobase-containing compound metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf01599g03012.1	sp|Q0WP01|PTR9_ARATH	*-*-	Protein NRT1/ PTR FAMILY 5.10	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf05850g00005.1	sp|A4SFR5|DNAJ_PROVI	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01892g01008.1	sp|Q9ZV89|TBL42_ARATH	***-	Protein trichome birefringence-like 42	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf02021g05004.1	AT3G63200.1	***-	PATATIN-like protein 9 LENGTH=384	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf04287g01009.1			Unknown protein		
Niben101Scf01109g03005.1	gb|AFW90605.1|	*-*-	Avr9/Cf-9 rapidly elicited protein 65 [Solanum tuberosum]		
Niben101Scf08782g02017.1	sp|Q8LG10|GAT15_ARATH	****	GATA transcription factor 15	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf16197g00008.1	sp|Q9FZ96|PUP1_ARATH	*-*-	Purine permease 1	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf00870g15011.1	sp|Q9LTR9|NMT1_ARATH	****	Glycylpeptide N-tetradecanoyltransferase 1	IPR000903 (Myristoyl-CoA:protein N-myristoyltransferase)	GO:0004379 (glycylpeptide N-tetradecanoyltransferase activity), GO:0006499 (N-terminal protein myristoylation)
Niben101Scf00737g01007.1	AT5G43500.1	***-	actin-related protein 9 LENGTH=596	IPR004000 (Actin family)	GO:0006338 (chromatin remodeling), GO:0031011 (Ino80 complex)
Niben101Scf04316g00007.1	sp|Q94B77|FH5_ARATH	***-	Formin-like protein 5	IPR015425 (Formin, FH2 domain)	
Niben101Scf01359g03007.1	AT5G22220.2	****	E2F transcription factor 1 LENGTH=469	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR015633 (E2F Family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005667 (transcription factor complex), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07494g00004.1	ref|XP_003609239.1|	****	E3 ubiquitin-protein ligase MARCH3 [Medicago truncatula] gb|AES91436.1| zinc finger protein [Medicago truncatula]	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf07826g04010.1	sp|Q5TJE6|PFD6_CANFA	****	Prefoldin subunit 6	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex), GO:0051082 (unfolded protein binding)
Niben101Scf00420g02001.1	sp|Q9Y3B2|EXOS1_HUMAN	****	Exosome complex component CSL4	IPR012340 (Nucleic acid-binding, OB-fold), IPR019495 (Exosome complex component CSL4), IPR025721 (Exosome complex component, N-terminal domain)	GO:0000178 (exosome (RNase complex)), GO:0003723 (RNA binding)
Niben101Scf01110g06002.1			Unknown protein		
Niben101Scf23648g00002.1	sp|Q5RET6|T184C_PONAB	***-	Transmembrane protein 184C	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184)	
Niben101Scf06211g01006.1	sp|P0CC34|NU2C1_ATRBE	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf01133g17012.1	AT4G25500.1	*-**	arginine/serine-rich splicing factor 35 LENGTH=350	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR029536 (Arginine/serine-rich-splicing factor RSP31)	GO:0000166 (nucleotide binding), GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005681 (spliceosomal complex)
Niben101Scf00854g05067.1	sp|A6U7W6|NUOD1_SINMW	*-**	NADH-quinone oxidoreductase subunit D 1	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07474g01011.1			Unknown protein		
Niben101Scf32850g00008.1	sp|P0C8Q7|PP369_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02375g10001.1	sp|Q9LPM9|BCAT6_ARATH	****	Branched-chain-amino-acid aminotransferase 6	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0004084 (branched-chain-amino-acid transaminase activity), GO:0008152 (metabolic process), GO:0009081 (branched-chain amino acid metabolic process)
Niben101Scf02290g02006.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07365g00006.1	ref|WP_026326981.1|	***-	aldo/keto reductase [Proteiniphilum acetatigenes]	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf13188g00016.1	AT1G43245.1	***-	SET domain-containing protein LENGTH=558	IPR001214 (SET domain)	GO:0005515 (protein binding)
Niben101Scf02316g03041.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00854g04005.1			Unknown protein		
Niben101Scf00176g00013.1	gb|AAC64222.1|	*-*-	bHLH transcription factor [Arabidopsis thaliana]	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02774g01010.1			Unknown protein		
Niben101Scf00487g03002.1	sp|A2Y7R2|PLA7_ORYSI	*-*-	Phospholipase A1-II 7	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02485g00002.1	sp|Q9ZT66|E134_MAIZE	***-	Endo-1,3;1,4-beta-D-glucanase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf03607g01013.1	sp|Q9CAM8|PP100_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07584g02008.1	AT5G50000.1	****	Protein kinase superfamily protein LENGTH=385	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03050g06002.1	sp|Q9M1A7|FBK75_ARATH	--*-	Jacalin-related lectin 38		
Niben101Scf14977g00025.1	AT3G05840.2	****	Protein kinase superfamily protein LENGTH=409	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07109g01003.1	AT2G20990.3	***-	synaptotagmin A LENGTH=579	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf02710g00011.1	sp|Q7XA78|D27_ARATH	*-*-	Beta-carotene isomerase D27, chloroplastic	IPR025114 (Domain of unknown function DUF4033)	
Niben101Scf01752g09018.1	AT5G55390.1	***-	ENHANCED DOWNY MILDEW 2 LENGTH=1297	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022702 (DNA (cytosine-5)-methyltransferase 1, replication foci domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09296g01002.1	sp|Q84K00|NAC78_ARATH	--*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02290g04002.1			Unknown protein		
Niben101Scf00332g06012.1	sp|P21616|AVP_VIGRR	****	Pyrophosphate-energized vacuolar membrane proton pump	IPR004131 (Pyrophosphate-energised proton pump)	GO:0004427 (inorganic diphosphatase activity), GO:0009678 (hydrogen-translocating pyrophosphatase activity), GO:0015992 (proton transport), GO:0016020 (membrane)
Niben101Scf01509g01006.1	AT2G48120.1	***-	pale cress protein (PAC) LENGTH=313		
Niben101Scf09248g03012.1	ref|XP_003599576.1|	*-*-	Ycf68 protein [Medicago truncatula]		
Niben101Scf01047g00001.1	AT5G18070.1	****	phosphoglucosamine mutase-related LENGTH=556	IPR016657 (Phosphoacetylglucosamine mutase)	GO:0004610 (phosphoacetylglucosamine mutase activity), GO:0005975 (carbohydrate metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf02513g04003.1	sp|Q5EAE0|ERGI3_BOVIN	***-	Endoplasmic reticulum-Golgi intermediate compartment protein 3	IPR012936 (Endoplasmic reticulum vesicle transporter, C-terminal)	
Niben101Scf02361g06004.1	sp|O65314|ACT_SCHDU	*-*-	Actin	IPR004000 (Actin family)	
Niben101Scf00854g07055.1	gb|ACX55038.1|	***-	pG1 protein [Bacillus amyloliquefaciens]		
Niben101Scf03039g03014.1	sp|Q5R4H0|ZNT9_PONAB	*-**	Zinc transporter 9	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf04271g00004.1	sp|Q5NRN4|CASP2_SOLDE	***-	Casparian strip membrane protein 2	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf12427g00004.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf12714g00002.1	AT3G48010.1	****	cyclic nucleotide-gated channel 16 LENGTH=705	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf07438g03001.1	sp|P81392|MYB06_ANTMA	***-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00351g03002.1	gb|AES90541.2|	*-*-	octicosapeptide/phox/Bem1p (PB1) domain protein [Medicago truncatula]	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf08341g01001.1	sp|Q9VUN3|RANL_DROME	****	GTP-binding nuclear protein Ran-like	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf01073g07006.1	AT3G13080.1	***-	multidrug resistance-associated protein 3 LENGTH=1514	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf02317g00010.1	sp|Q9FJU9|E1313_ARATH	***-	Glucan endo-1,3-beta-glucosidase 13	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09505g01003.1	AT3G19650.1	***-	cyclin-related LENGTH=302	IPR018545 (Btz domain)	
Niben101Scf03226g01004.1	sp|Q7T2A3|DDA1_DANRE	-**-	DET1- and DDB1-associated protein 1	IPR018276 (Ubiquitin ligase, Det1/DDB1-complexing)	
Niben101Scf02264g03008.1	ref|XP_002513285.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF48688.1| conserved hypothetical protein [Ricinus communis]	IPR021641 (Protein of unknown function DUF3245)	
Niben101Scf11791g00002.1	gb|AES64035.2|	*-**	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00520g13001.1	sp|Q9LH31|TPS30_ARATH	*-**	Terpenoid synthase 30	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf12160g00004.1	sp|Q142H0|NUOD_BURXL	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02139g04019.1	AT5G03370.1	****	acylphosphatase family LENGTH=171	IPR001792 (Acylphosphatase-like domain), IPR020456 (Acylphosphatase)	GO:0003998 (acylphosphatase activity)
Niben101Scf01731g08001.1	AT1G63340.1	****	Flavin-containing monooxygenase family protein LENGTH=424	IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05799g01022.1	sp|Q6DAE6|RS9_PECAS	***-	30S ribosomal protein S9	IPR000754 (Ribosomal protein S9), IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02043g07004.1			Unknown protein		
Niben101Scf00712g15005.1	sp|Q43206|CATA1_WHEAT	*-**	Catalase-1	IPR011614 (Catalase core domain), IPR018028 (Catalase, mono-functional, haem-containing), IPR020835 (Catalase-like domain)	GO:0004096 (catalase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg10063g00002.1	ref|XP_003597359.1|	*-*-	PGR5-like protein [Medicago truncatula] gb|AES67610.1| PGR5-like protein 1A, putative [Medicago truncatula]		
Niben101Scf03400g01019.1	ref|XP_007010078.1|	*-*-	F-box and Leucine Rich Repeat domains containing protein, putative isoform 3, partial [Theobroma cacao] gb|EOY18888.1| F-box and Leucine Rich Repeat domains containing protein, putative isoform 3, partial [Theobroma cacao]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf00367g02013.1	sp|Q94KU6|PAP2_BRACM	-**-	Plastid lipid-associated protein 2, chloroplastic	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf02608g01008.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR023413 (Green fluorescent protein-like)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf14937g00012.1			Unknown protein		
Niben101Scf11684g01006.1	emb|CDY44501.1|	*-*-	BnaC01g10480D [Brassica napus]		
Niben101Scf02085g12005.1	gb|AES87101.2|	***-	Avr9/Cf-9 rapidly elicited protein [Medicago truncatula]	IPR007700 (Protein of unknown function DUF668), IPR021864 (Protein of unknown function DUF3475)	
Niben101Scf09678g01012.1	AT4G11400.1	*-*-	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=573	IPR000949 (ELM2 domain)	
Niben101Scf18384g00001.1	sp|Q93VH2|BBD2_ARATH	****	Bifunctional nuclease 2	IPR003729 (Bifunctional nuclease domain)	GO:0004518 (nuclease activity)
Niben101Scf24608g00008.1	ref|XP_003599188.1|	*-*-	F-box protein [Medicago truncatula]	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01831g00001.1	sp|O64416|RBS_MARPA	***-	Ribulose bisphosphate carboxylase small chain, chloroplastic	IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024681 (Ribulose bisphosphate carboxylase, small chain)	
Niben101Ctg15478g00004.1	AT3G26560.1	*-*-	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02413g01013.1	sp|Q9FKM2|VDAC4_ARATH	****	Mitochondrial outer membrane protein porin 4	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0055085 (transmembrane transport)
Niben101Scf00245g05010.1	sp|B1PM81|SGF11_MUSDO	*-*-	SAGA-associated factor 11 homolog	IPR013246 (SAGA complex, Sgf11 subunit)	
Niben101Scf13525g00022.1	AT2G39750.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=694	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf04910g04008.1	sp|Q9SZA3|EIF3K_ARATH	****	Eukaryotic translation initiation factor 3 subunit K	IPR005062 (SAC3/GANP/Nin1/mts3/eIF-3 p25), IPR009374 (Eukaryotic translation initiation factor 3 subunit K), IPR016024 (Armadillo-type fold)	GO:0003743 (translation initiation factor activity), GO:0005488 (binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex), GO:0006446 (regulation of translational initiation), GO:0043022 (ribosome binding)
Niben101Scf04790g01008.1	sp|P0C5B1|MAD14_ORYSI	****	MADS-box transcription factor 14	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00715g00004.1	sp|Q9FJJ4|FB298_ARATH	--*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf01580g00001.1	sp|Q93ZY2|ROGF1_ARATH	****	Rop guanine nucleotide exchange factor 1	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf02214g04002.1	emb|CDY00537.1|	***-	BnaC04g23880D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf07741g02025.1	AT5G53010.1	****	calcium-transporting ATPase, putative LENGTH=1049	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain), IPR024750 (Calcium-transporting P-type ATPase, N-terminal autoinhibitory domain)	GO:0000166 (nucleotide binding), GO:0005388 (calcium-transporting ATPase activity), GO:0005516 (calmodulin binding), GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding), GO:0070588 (calcium ion transmembrane transport)
Niben101Scf07663g01003.1	sp|Q8W4G6|CRK15_ARATH	*-**	Cysteine-rich receptor-like protein kinase 15	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00665g00006.1	sp|Q6N4U9|RL18_RHOPA	***-	50S ribosomal protein L18	IPR005484 (Ribosomal protein L18/L5)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07493g06001.1	sp|Q84TE6|NAC22_ARATH	--*-	NAC domain-containing protein 21/22	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04011g10013.1	AT3G21700.3	****	Ras-related small GTP-binding family protein LENGTH=292	IPR013684 (Mitochondrial Rho-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf11125g00024.1	AT4G17800.1	*-*-	Predicted AT-hook DNA-binding family protein LENGTH=292	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf35010g00001.1			Unknown protein		
Niben101Scf02892g01014.1			Unknown protein		
Niben101Scf00170g00005.1	sp|Q9SIB4|WOX3_ARATH	***-	WUSCHEL-related homeobox 3	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf33454g00008.1			Unknown protein		
Niben101Scf00988g01006.1	AT1G07990.1	***-	SIT4 phosphatase-associated family protein LENGTH=802	IPR007587 (SIT4 phosphatase-associated protein family), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf11636g01008.1	emb|CDX69191.1|	***-	BnaC01g02620D [Brassica napus]		
Niben101Scf03080g04005.1	sp|Q43383|ACCH5_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 5	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf04607g07008.1	sp|Q09174|GMA12_SCHPO	--*-	Alpha-1,2-galactosyltransferase	IPR008630 (Galactosyl transferase)	GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03264g05010.1	sp|Q84KG5|CCD_CROSA	***-	Carotenoid 9,10(9',10')-cleavage dioxygenase	IPR004294 (Carotenoid oxygenase)	
Niben101Scf01498g12006.1	AT1G22630.1	*-*-	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 86 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). LENGTH=110		
Niben101Scf01316g02003.1	sp|B6I1V4|MDH_ECOSE	****	Malate dehydrogenase	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf01463g04003.1	ref|YP_002608396.1|	***-	orf86 [Vitis vinifera] emb|CAQ77655.1| orf86 [Vitis vinifera] gb|ACS15212.1| ORF86 [Vitis vinifera]		
Niben101Scf01297g04005.1	sp|Q88SI6|UBIE_LACPL	--**	Demethylmenaquinone methyltransferase	IPR006342 (Methyltransferase FkbM), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf05177g02012.1	sp|Q93W54|ICMTB_ARATH	****	Protein-S-isoprenylcysteine O-methyltransferase B	IPR007269 (Isoprenylcysteine carboxyl methyltransferase)	GO:0004671 (protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity), GO:0005783 (endoplasmic reticulum), GO:0006481 (C-terminal protein methylation), GO:0016021 (integral component of membrane)
Niben101Scf02792g02016.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf14830g00005.1	sp|A9X4T1|CHD1_BOMMO	*-**	Chromodomain-helicase-DNA-binding protein 1	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR014012 (Helicase/SANT-associated, DNA binding), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf11361g02004.1	sp|Q2YDC9|PDCD2_BOVIN	***-	Programmed cell death protein 2	IPR002893 (Zinc finger, MYND-type), IPR007320 (Programmed cell death protein 2, C-terminal)	GO:0005737 (cytoplasm)
Niben101Scf04122g03019.1	AT4G00990.1	*-*-	Transcription factor jumonji (jmjC) domain-containing protein LENGTH=840	IPR003347 (JmjC domain), IPR014977 (WRC)	
Niben101Scf05929g02002.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00911g01001.1	sp|Q9M907|PP217_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03023g01010.1	sp|Q8XJR3|DPO3_CLOPE	--*-	DNA polymerase III PolC-type		
Niben101Scf02854g09017.1	gb|AAF22135.1|AF127919_1	***-	high mobility group protein I/Y [Brassica napus]	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR020478 (AT hook-like)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf01504g02002.1	AT1G18160.1	*-**	Protein kinase superfamily protein LENGTH=992	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02413g03021.1			Unknown protein		
Niben101Scf07388g00018.1	sp|O23044|PER3_ARATH	****	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg11127g00002.1	sp|P82381|ICI_LINUS	-***	Proteinase inhibitor	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding)
Niben101Scf01041g05003.1	AT5G64420.1	*-*-	DNA polymerase V family LENGTH=1306		
Niben101Scf01862g02022.1	sp|C7FF04|PPO3_AGABI	--**	Polyphenol oxidase 3	IPR008922 (Uncharacterised domain, di-copper centre), IPR022740 (Polyphenol oxidase, C-terminal)	GO:0004097 (catechol oxidase activity), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03088g03009.1	sp|Q9FVI1|ADF2_PETHY	****	Actin-depolymerizing factor 2	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf00611g04004.1	sp|Q5RE95|WDR5B_PONAB	***-	WD repeat-containing protein 5B	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf16413g00001.1	AT1G44750.1	***-	purine permease 11 LENGTH=379	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf05132g00001.1	sp|Q9FJU4|MIOX5_ARATH	*-**	Inositol oxygenase 5	IPR007828 (Inositol oxygenase)	GO:0005506 (iron ion binding), GO:0005737 (cytoplasm), GO:0019310 (inositol catabolic process), GO:0050113 (inositol oxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09554g02007.1	sp|Q9FLZ8|EDL2_ARATH	***-	EID1-like F-box protein 2	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf19421g00011.1	ref|NP_001288856.1|	****	mitochondrial outer membrane protein porin 3-like [Brassica rapa] gb|AAS21632.1| voltage-dependent anion-selective channel protein [Brassica rapa]	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0055085 (transmembrane transport)
Niben101Scf06977g00009.1	AT5G07980.1	*-*-	dentin sialophosphoprotein-related LENGTH=1501		
Niben101Scf11105g01005.1	AT1G76640.1	****	Calcium-binding EF-hand family protein LENGTH=159	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf04177g00001.1	sp|B1AQJ2|UBP36_MOUSE	*-**	Ubiquitin carboxyl-terminal hydrolase 36	IPR001607 (Zinc finger, UBP-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0008270 (zinc ion binding), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf07462g01007.1	AT4G33160.1	***-	F-box family protein LENGTH=457	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf03755g04001.1	gb|KEH39539.1|	***-	CHUP1, putative [Medicago truncatula]		
Niben101Scf00870g01010.1	sp|P48601|PRS4_DROME	***-	26S protease regulatory subunit 4	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02582g00004.1	sp|P52012|PPIL2_CAEEL	*-**	Peptidyl-prolyl cis-trans isomerase 4	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0005515 (protein binding), GO:0006457 (protein folding)
Niben101Scf01999g06011.1	sp|Q0BW82|DNAK_GRABC	***-	Chaperone protein DnaK	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf00468g01007.1	AT5G33320.1	***-	Glucose-6-phosphate/phosphate translocator-related LENGTH=408	IPR004696 (Triose phosphate/phosphoenolpyruvate translocator), IPR004853 (Triose-phosphate transporter domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf10940g07002.1	sp|P05499|ATP6_TOBAC	****	ATP synthase subunit a	IPR000568 (ATPase, F0 complex, subunit A)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf03842g07001.1	sp|P14953|TRPE_CLOTM	****	Anthranilate synthase component 1	IPR019999 (Anthranilate synthase component I - like)	GO:0000162 (tryptophan biosynthetic process), GO:0004049 (anthranilate synthase activity), GO:0009058 (biosynthetic process), GO:0016833 (oxo-acid-lyase activity)
Niben101Scf06981g00001.1	sp|Q9SYM1|MSL6_ARATH	***-	Mechanosensitive ion channel protein 6	IPR006685 (Mechanosensitive ion channel MscS)	GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03702g02001.1	sp|Q7F8R0|C3H14_ORYSJ	***-	Zinc finger CCCH domain-containing protein 14	IPR000571 (Zinc finger, CCCH-type), IPR004088 (K Homology domain, type 1)	GO:0003723 (RNA binding), GO:0046872 (metal ion binding)
Niben101Scf03839g00001.1	gb|AES97132.2|	--*-	DUF223 domain protein [Medicago truncatula]		
Niben101Scf10836g00015.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02639g03024.1	emb|CDX74851.1|	***-	BnaA05g05970D [Brassica napus]		
Niben101Scf01240g03006.1	gb|AEW48209.1|	*-*-	disease resistance protein RGH5 [Solanum huancabambense]		
Niben101Scf01055g02003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06081g02016.1	sp|P41099|RLA2_PARAR	*-*-	60S acidic ribosomal protein P2	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf03717g01006.1	AT3G26570.1	****	phosphate transporter 2;1 LENGTH=613	IPR001204 (Phosphate transporter)	GO:0005315 (inorganic phosphate transmembrane transporter activity), GO:0006817 (phosphate ion transport), GO:0016020 (membrane)
Niben101Scf01517g08005.1	AT3G54070.1	***-	Ankyrin repeat family protein LENGTH=574	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf04627g03001.1	sp|Q9FJX6|FH6_ARATH	*-*-	Formin-like protein 6	IPR015425 (Formin, FH2 domain)	
Niben101Scf05824g06007.1	emb|CDX94242.1|	***-	BnaC02g29020D [Brassica napus]		
Niben101Scf13886g01022.1	sp|O23225|PUB5_ARATH	***-	U-box domain-containing protein 5	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf06218g03002.1	sp|P83332|TLP1_PRUPE	***-	Thaumatin-like protein 1	IPR001938 (Thaumatin)	
Niben101Scf05890g02026.1	sp|Q8GW72|FUCO1_ARATH	****	Alpha-L-fucosidase 1	IPR000933 (Glycoside hydrolase, family 29), IPR008979 (Galactose-binding domain-like), IPR017853 (Glycoside hydrolase superfamily)	GO:0004560 (alpha-L-fucosidase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03565g04006.1	AT5G17440.1	***-	LUC7 related protein LENGTH=404	IPR004882 (Luc7-related)	GO:0003729 (mRNA binding), GO:0005685 (U1 snRNP), GO:0006376 (mRNA splice site selection)
Niben101Scf14513g00014.1	sp|Q94B71|OBE3_ARATH	***-	Protein OBERON 3	IPR004082 (Protein OBERON)	
Niben101Scf04126g05024.1	gb|KEH21806.1|	*-*-	S-adenosylmethionine decarboxylase proenzyme [Medicago truncatula]	IPR012511 (S-adenosyl-l-methionine decarboxylase leader peptide)	
Niben101Ctg15717g00003.1	sp|Q9SV43|PLP7_ARATH	***-	Patatin-like protein 7	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf01710g01003.1	ref|WP_024649811.1|	****	HAD family hydrolase [Pseudomonas syringae]	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain), IPR023465 (Riboflavin kinase domain), IPR023468 (Riboflavin kinase)	GO:0008152 (metabolic process), GO:0008531 (riboflavin kinase activity), GO:0009231 (riboflavin biosynthetic process), GO:0016787 (hydrolase activity)
Niben101Scf10041g00013.1	sp|Q7WTR3|MDTK_ERWAM	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf06024g00002.1	sp|B1JH01|GHRB_YERPY	****	Glyoxylate/hydroxypyruvate reductase B	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00163g21003.1	sp|Q9ZUL7|DEF01_ARATH	***-	Defensin-like protein 1	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf03030g00006.1	emb|CDX85244.1|	*-*-	BnaC07g25550D [Brassica napus]		
Niben101Scf02074g06068.1	sp|B3EP66|RS12_CHLPB	****	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf02569g00025.1	gb|AHD24760.1|	*-*-	Ycf1, partial (chloroplast) [Solanum cochabambense]		
Niben101Scf00197g01019.1			Unknown protein		
Niben101Scf05721g01002.1	sp|Q5ZK33|LETM1_CHICK	*-*-	LETM1 and EF-hand domain-containing protein 1, mitochondrial	IPR011685 (LETM1-like), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02665g01002.1	sp|P46032|PTR2_ARATH	***-	Protein NRT1/ PTR FAMILY 8.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf04334g01001.1	sp|O65468|CRK8_ARATH	*-**	Cysteine-rich receptor-like protein kinase 8	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01026g03022.1	tpg|DAA40887.1|	***-	TPA: hypothetical protein ZEAMMB73_782543 [Zea mays]		
Niben101Scf02171g00008.1	AT3G45640.1	****	mitogen-activated protein kinase 3 LENGTH=370	IPR008352 (Mitogen-activated protein (MAP) kinase, p38), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11235g01007.1	sp|Q6Z9F4|CIPK6_ORYSJ	****	CBL-interacting protein kinase 6	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12404g00002.1	sp|Q2KXH8|RL28_BORA1	*-*-	50S ribosomal protein L28	IPR001383 (Ribosomal protein L28), IPR026569 (Ribosomal protein L28/L24)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01191g01006.1	sp|Q8JZN7|MIRO2_MOUSE	****	Mitochondrial Rho GTPase 2	IPR001806 (Small GTPase superfamily), IPR011992 (EF-hand domain pair), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005509 (calcium ion binding), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0005741 (mitochondrial outer membrane), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0019725 (cellular homeostasis)
Niben101Scf02572g01001.1	sp|Q8S3D1|BH068_ARATH	*-*-	Transcription factor bHLH68		
Niben101Scf05645g00005.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01862g02024.1	sp|A7ERM5|ATG26_SCLS1	*-*-	Sterol 3-beta-glucosyltransferase	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase), IPR004276 (Glycosyltransferase family 28, N-terminal domain)	GO:0005975 (carbohydrate metabolic process), GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups), GO:0030259 (lipid glycosylation)
Niben101Scf02694g04002.1	AT4G37650.1	****	GRAS family transcription factor LENGTH=531	IPR005202 (Transcription factor GRAS), IPR030019 (Protein short-root)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0008356 (asymmetric cell division), GO:0009956 (radial pattern formation), GO:0043565 (sequence-specific DNA binding), GO:0048366 (leaf development)
Niben101Scf01847g02007.1	ref|XP_002529252.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF33130.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04455g01003.1	sp|Q9C7T4|BH096_ARATH	***-	Transcription factor bHLH96	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00797g17014.1	AT2G41090.1	****	Calcium-binding EF-hand family protein LENGTH=191	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00144g01015.1	sp|Q3M690|YCF3_ANAVT	*-*-	Photosystem I assembly protein Ycf3	IPR011990 (Tetratricopeptide-like helical domain), IPR029489 (O-GlcNAc transferase, C-terminal)	GO:0005515 (protein binding)
Niben101Scf08206g01008.1	AT5G42090.1	***-	Lung seven transmembrane receptor family protein LENGTH=439	IPR009637 (Transmembrane receptor, eukaryota)	GO:0016021 (integral component of membrane)
Niben101Scf23874g00005.1	sp|O50064|FIMB2_ARATH	***-	Fimbrin-2	IPR001715 (Calponin homology domain)	GO:0005515 (protein binding)
Niben101Scf02440g01013.1	AT4G21380.1	*-**	receptor kinase 3 LENGTH=850	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09760g01004.1	sp|D1KF50|SRS2L_ARATH	*-*-	ATP-dependent DNA helicase SRS2-like protein		
Niben101Ctg12260g00004.1	AT5G59010.1	*-*-	Protein kinase protein with tetratricopeptide repeat domain LENGTH=489		
Niben101Scf01334g04008.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04488g00003.1	AT5G17270.1	*-*-	Protein prenylyltransferase superfamily protein LENGTH=899		
Niben101Scf09778g00011.1	sp|Q9XJ60|MAD50_ORYSJ	****	MADS-box transcription factor 50	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02262g01007.1	sp|P27496|CB25_TOBAC	***-	Chlorophyll a-b binding protein 50, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf18639g00023.1	AT5G08160.1	****	serine/threonine protein kinase 3 LENGTH=347	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02929g03009.1	sp|A5UBS8|SYM_HAEIE	--*-	Methionine--tRNA ligase		
Niben101Scf01154g16001.1	sp|Q9SJ40|VPS11_ARATH	*-*-	Vacuolar protein-sorting-associated protein 11 homolog	IPR001841 (Zinc finger, RING-type), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR024763 (Vacuolar protein sorting protein 11, C-terminal)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06633g02009.1	sp|Q9T076|ENL2_ARATH	*-*-	Early nodulin-like protein 2	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf05467g02001.1	sp|P71019|FABD_BACSU	****	Malonyl CoA-acyl carrier protein transacylase	IPR004410 (Malonyl CoA-acyl carrier protein transacylase, FabD-type), IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0003824 (catalytic activity), GO:0004314 ([acyl-carrier-protein] S-malonyltransferase activity), GO:0008152 (metabolic process), GO:0016740 (transferase activity)
Niben101Scf05295g03003.1	sp|Q94CD8|E134_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 4	IPR012946 (X8 domain)	
Niben101Scf14070g00007.1			Unknown protein		
Niben101Scf02603g01013.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07788g04007.1	AT3G27580.1	****	Protein kinase superfamily protein LENGTH=578	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf15579g01003.1	sp|Q499N3|WDR18_RAT	--*-	WD repeat-containing protein 18	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf06375g02001.1	AT1G22180.2	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=314	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf26089g00004.1	ref|NP_193712.2|	--*-	Glyc with chitinase insertion domain [Arabidopsis thaliana]	IPR017853 (Glycoside hydrolase superfamily)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf01750g11004.1	emb|CDY08510.1|	***-	BnaA05g27460D [Brassica napus]		
Niben101Scf00367g02011.1	AT2G33470.1	****	glycolipid transfer protein 1 LENGTH=202	IPR004518 (NTP pyrophosphohydrolase MazG, putative catalytic core), IPR009039 (EAR), IPR014830 (Glycolipid transfer protein domain)	GO:0005737 (cytoplasm), GO:0017089 (glycolipid transporter activity), GO:0046836 (glycolipid transport), GO:0051861 (glycolipid binding)
Niben101Scf01283g01015.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00974g02009.1	AT1G13790.1	***-	XH/XS domain-containing protein LENGTH=736	IPR005379 (Uncharacterised domain XH), IPR005380 (XS domain)	GO:0031047 (gene silencing by RNA)
Niben101Scf03944g02009.1			Unknown protein		
Niben101Scf01297g04006.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06094g00011.1	sp|P10538|AMYB_SOYBN	****	Beta-amylase	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf10162g02016.1	sp|O22715|AP1M2_ARATH	****	AP-1 complex subunit mu-2	IPR001392 (Clathrin adaptor, mu subunit), IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf06825g01019.1	ref|WP_026787958.1|	*-*-	MULTISPECIES: hypothetical protein [Planktothrix]		
Niben101Scf01580g01008.1	ref|XP_003610227.1|	*-*-	Ycf68 [Medicago truncatula]		
Niben101Scf03801g05005.1	AT2G45260.1	***-	Plant protein of unknown function (DUF641) LENGTH=425		
Niben101Scf09623g00018.1	AT3G13460.1	*-*-	evolutionarily conserved C-terminal region 2 LENGTH=667	IPR007275 (YTH domain)	
Niben101Scf09317g02002.1	sp|Q2TBG8|UCHL3_BOVIN	****	Ubiquitin carboxyl-terminal hydrolase isozyme L3	IPR001578 (Peptidase C12, ubiquitin carboxyl-terminal hydrolase)	GO:0004843 (ubiquitin-specific protease activity), GO:0005622 (intracellular), GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf01314g00018.1	gb|EJY73850.1|	*-*-	methyltransferase, FkbM family [Oxytricha trifallax]	IPR006342 (Methyltransferase FkbM), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf02825g00022.1	gb|ACG45151.1|	***-	fiber protein Fb11 [Zea mays]		
Niben101Scf09811g02004.1	ref|NP_001046879.1|	--*-	OsJ_06796 [Oryza sativa Japonica Group]	IPR011676 (Domain of unknown function DUF1618)	
Niben101Scf01970g06011.1	sp|Q9XHS0|RS12_HORVU	***-	40S ribosomal protein S12	IPR000530 (Ribosomal protein S12e), IPR029064 (50S ribosomal protein L30e-like)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03693g08007.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain), IPR012900 (G-box binding, MFMR)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08652g00014.1	AT5G41950.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=565	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08533g02016.1	gb|KEH42351.1|	***-	DNA-binding protein, putative [Medicago truncatula]		
Niben101Ctg11443g00001.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf04328g00051.1	sp|A4GGA2|PSBD_PHAVU	*-**	Photosystem II D2 protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf11515g01009.1	sp|Q9UBX3|DIC_HUMAN	*-*-	Mitochondrial dicarboxylate carrier	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf05419g00008.1	AT4G14920.1	*-**	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein LENGTH=1138	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02562g01013.1	sp|Q43729|PER57_ARATH	*-**	Peroxidase 57	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00201g00004.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04096g04008.1	ref|WP_019857672.1|	***-	iron-sulfur cluster assembly protein HesB [Mesorhizobium loti]	IPR001347 (Sugar isomerase (SIS))	GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf01599g01003.1	ref|XP_007035530.1|	*-**	Mitochondrial transcription termination factor family protein, putative [Theobroma cacao] gb|EOY06456.1| Mitochondrial transcription termination factor family protein, putative [Theobroma cacao]	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00571g04017.1	sp|Q9UJP4|KLH21_HUMAN	*-*-	Kelch-like protein 21	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf05855g03001.1	sp|Q9M117|ARC5A_ARATH	****	Actin-related protein 2/3 complex subunit 5A	IPR006789 (Actin-related protein 2/3 complex subunit 5)	GO:0005885 (Arp2/3 protein complex), GO:0015629 (actin cytoskeleton), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf08664g00020.1	ref|XP_002534597.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF27784.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01826g02005.1	sp|Q5RC69|DCTD_PONAB	***-	Deoxycytidylate deaminase	IPR015517 (Deoxycytidylate deaminase-related)	GO:0003824 (catalytic activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity)
Niben101Scf07527g02006.1	sp|Q2IIW6|LIPA_ANADE	****	Lipoyl synthase	IPR003698 (Lipoyl synthase), IPR007197 (Radical SAM)	GO:0003824 (catalytic activity), GO:0009107 (lipoate biosynthetic process), GO:0016992 (lipoate synthase activity), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf03952g06012.1	sp|Q3UG20|KMT2E_MOUSE	--*-	Histone-lysine N-methyltransferase 2E	IPR000313 (PWWP domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02531g02012.1	gb|KEH36642.1|	***-	DUF1685 family protein [Medicago truncatula]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf03683g03013.1	ref|XP_003616507.1|	****	LIM and UIM domain-containing [Medicago truncatula] gb|AES99465.1| zinc ion-binding protein [Medicago truncatula]	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf06863g01002.1	sp|Q6VAM4|MAD23_ORYSJ	--*-	MADS-box transcription factor 23		
Niben101Scf01372g06020.1	sp|Q9M9S0|ZHD4_ARATH	***-	Zinc-finger homeodomain protein 4	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf02631g03008.1	AT3G54640.1	*-**	tryptophan synthase alpha chain LENGTH=312	IPR002028 (Tryptophan synthase, alpha chain), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004834 (tryptophan synthase activity), GO:0006568 (tryptophan metabolic process), GO:0008152 (metabolic process)
Niben101Scf01606g02019.1	emb|CDY00210.1|	***-	BnaA06g21110D [Brassica napus]		
Niben101Scf04749g00008.1	sp|Q9SC88|GCP4_MEDTR	*-*-	Gamma-tubulin complex component 4 homolog	IPR007259 (Gamma-tubulin complex component protein)	GO:0000226 (microtubule cytoskeleton organization), GO:0000922 (spindle pole), GO:0005815 (microtubule organizing center)
Niben101Scf22538g00002.1	AT5G59560.1	***-	sensitivity to red light reduced protein (SRR1) LENGTH=275	IPR012942 (Sensitivity To Red Light Reduced-like, SRR1)	
Niben101Scf13644g00020.1	sp|A2RSJ4|UH1BL_MOUSE	--*-	UHRF1-binding protein 1-like	IPR026728 (UHRF1-binding protein 1-like), IPR026854 (Vacuolar protein sorting-associated protein 13A N-terminal domain)	
Niben101Scf00953g08007.1	AT1G50030.1	***-	target of rapamycin LENGTH=2481	IPR009076 (Rapamycin-binding domain), IPR014009 (PIK-related kinase), IPR016024 (Armadillo-type fold), IPR024585 (Domain of unknown function DUF3385,  target of rapamycin protein)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0008144 (drug binding)
Niben101Scf01555g04002.1	sp|Q66HG1|DMTF1_RAT	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00177g09009.1			Unknown protein		
Niben101Scf00273g08002.1	emb|CBG76064.1|	***-	Myb 12 transcription factor [Solanum chmielewskii]		
Niben101Scf07466g06001.1	gb|EYS80727.1|	****	ABC transporter ATP-binding protein [Cupriavidus sp. SK-4]	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf23248g00006.1	ref|XP_007047229.1|	--*-	AP2/B3-like transcriptional factor family protein isoform 3 [Theobroma cacao] gb|EOX91386.1| AP2/B3-like transcriptional factor family protein isoform 3 [Theobroma cacao]		
Niben101Scf10970g00008.1	sp|P55781|NU4M_GADMO	*-**	NADH-ubiquinone oxidoreductase chain 4	IPR003918 (NADH:ubiquinone oxidoreductase)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf08137g01030.1	sp|P93194|RPK1_IPONI	****	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00428g17008.1	sp|Q8W4H1|GAT26_ARATH	****	GATA transcription factor 26	IPR013088 (Zinc finger, NHR/GATA-type), IPR028020 (ASX homology domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07589g01014.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf02111g16023.1	sp|Q9LVQ0|PME31_ARATH	****	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf00428g02004.1	ref|XP_007036339.1|	***-	S-aden isoform 1 [Theobroma cacao]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf18129g00007.1	ref|YP_002608396.1|	***-	orf86 [Vitis vinifera] emb|CAQ77655.1| orf86 [Vitis vinifera] gb|ACS15212.1| ORF86 [Vitis vinifera]		
Niben101Scf06876g01028.1	AT1G54500.1	*-*-	Rubredoxin-like superfamily protein LENGTH=195	IPR004039 (Rubredoxin-type fold), IPR018527 (Rubredoxin, iron-binding site)	GO:0005506 (iron ion binding), GO:0046872 (metal ion binding)
Niben101Scf01305g04018.1	emb|CDX74488.1|	*-*-	BnaA04g09010D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf03648g04019.1			Unknown protein		
Niben101Scf01365g06013.1	sp|Q9S7H5|SCL21_ARATH	***-	Scarecrow-like protein 21	IPR005202 (Transcription factor GRAS), IPR030028 (Scarecrow-like protein 26/nodulation signalling pathway 2)	
Niben101Scf35900g00001.1	sp|P33625|TBA_EUGGR	*-*-	Tubulin alpha chain	IPR000217 (Tubulin)	GO:0005874 (microtubule), GO:0007017 (microtubule-based process)
Niben101Scf04871g15001.1	gb|KEH26288.1|	*-*-	heavy metal-associated domain protein [Medicago truncatula]		
Niben101Scf07608g04008.1	sp|O65934|ABC1_MYCTU	--**	ABC transporter ATP-binding/permease protein Rv1747	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf02541g07004.1	sp|P75520|PGSA_MYCPN	*-**	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	IPR000462 (CDP-alcohol phosphatidyltransferase)	GO:0008654 (phospholipid biosynthetic process), GO:0016020 (membrane), GO:0016780 (phosphotransferase activity, for other substituted phosphate groups)
Niben101Scf01784g03001.1	AT1G45249.3	****	abscisic acid responsive elements-binding factor 2 LENGTH=427	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03129g05006.1	gb|ABN08739.1|	***-	IMP dehydrogenase/GMP reductase, putative [Medicago truncatula]		
Niben101Scf00577g12006.1	sp|P28811|MMSB_PSEAE	--**	3-hydroxyisobutyrate dehydrogenase	IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0006573 (valine metabolic process), GO:0008442 (3-hydroxyisobutyrate dehydrogenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02886g01001.1	sp|Q9LTJ1|MBD6_ARATH	*-**	Methyl-CpG-binding domain-containing protein 6	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf00712g05021.1	sp|Q6MLS7|FTSH1_BDEBA	*-**	ATP-dependent zinc metalloprotease FtsH 1	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02698g01002.1	AT1G79640.1	*-*-	Protein kinase superfamily protein LENGTH=687		
Niben101Scf00870g02001.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00893g00003.1	AT2G18360.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=313	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05226g01006.1	sp|Q84LH3|WEX_ARATH	****	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf05188g02016.1			Unknown protein		
Niben101Scf04664g04015.1	emb|CDX82023.1|	***-	BnaC08g35780D [Brassica napus]		
Niben101Scf05052g00002.1	ref|XP_002318100.1|	*-*-	MA3 domain-containing family protein [Populus trichocarpa] gb|EEE96320.1| MA3 domain-containing family protein [Populus trichocarpa]		
Niben101Scf04815g01011.1	sp|O94514|NOP56_SCHPO	***-	Nucleolar protein 56	IPR002687 (Nop domain), IPR012974 (NOP5, N-terminal), IPR012976 (NOSIC)	
Niben101Scf34081g00004.1	sp|Q6Z2G9|TLP5_ORYSJ	***-	Tubby-like F-box protein 5	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf00096g04015.1	sp|O17320|ACT_CRAGI	***-	Actin	IPR004000 (Actin family)	
Niben101Scf00502g00006.1	AT3G20020.1	****	protein arginine methyltransferase 6 LENGTH=435	IPR025799 (Protein arginine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity)
Niben101Scf06106g01014.1	AT5G02880.1	*-**	ubiquitin-protein ligase 4 LENGTH=1502	IPR000569 (HECT), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding)
Niben101Scf14344g00003.1			Unknown protein		
Niben101Scf09416g05007.1			Unknown protein		
Niben101Scf03766g01011.1	sp|Q96GM5|SMRD1_HUMAN	***-	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	IPR003121 (SWIB/MDM2 domain)	GO:0005515 (protein binding)
Niben101Scf00487g01009.1	sp|Q94CD8|E134_ARATH	***-	Glucan endo-1,3-beta-glucosidase 4	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04609g00038.1	sp|Q9ASZ8|PPR37_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04776g00003.1	sp|A8GKU9|GLGX_SERP5	***-	Glycogen debranching enzyme	IPR013780 (Glycosyl hydrolase, family 13, all-beta), IPR013783 (Immunoglobulin-like fold), IPR014756 (Immunoglobulin E-set), IPR015902 (Glycoside hydrolase, family 13), IPR017853 (Glycoside hydrolase superfamily)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0043169 (cation binding)
Niben101Scf01189g04011.1	gb|AES70859.2|	***-	P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02989g01007.1	AT5G02700.1	***-	F-box/RNI-like superfamily protein LENGTH=456		
Niben101Scf01980g10004.1	AT1G22400.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04945g00008.1	sp|Q28I39|IMP1L_XENTR	****	Mitochondrial inner membrane protease subunit 1	IPR000223 (Peptidase S26A, signal peptidase I), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006508 (proteolysis), GO:0006627 (protein processing involved in protein targeting to mitochondrion), GO:0008233 (peptidase activity), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane)
Niben101Scf06868g01002.1			Unknown protein		
Niben101Scf06258g00013.1	emb|CDX89342.1|	*-*-	BnaA01g15510D [Brassica napus]		
Niben101Scf04384g00001.1	sp|F4IXW2|BIG5_ARATH	--*-	Brefeldin A-inhibited guanine nucleotide-exchange protein 5		
Niben101Scf26324g00003.1	sp|A4R1J7|SEC23_MAGO7	****	Protein transport protein SEC23	IPR002035 (von Willebrand factor, type A), IPR006896 (Sec23/Sec24, trunk domain), IPR006900 (Sec23/Sec24, helical domain), IPR012990 (Sec23/Sec24 beta-sandwich), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0006886 (intracellular protein transport), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0030127 (COPII vesicle coat)
Niben101Scf05124g01020.1	sp|P42046|PSAC_CUCSA	****	Photosystem I iron-sulfur center	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K), IPR017491 (Photosystem I protein PsaC)	GO:0009055 (electron carrier activity), GO:0009522 (photosystem I), GO:0009773 (photosynthetic electron transport in photosystem I), GO:0015979 (photosynthesis), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042651 (thylakoid membrane), GO:0042773 (ATP synthesis coupled electron transport), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01191g02021.1	sp|O14343|KLP5_SCHPO	*-**	Kinesin-like protein 5	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf10840g01007.1	ref|XP_007040372.1|	*-*-	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao] gb|EOY24873.1| Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao]		
Niben101Scf03070g03001.1	sp|P61759|PFD3_MOUSE	****	Prefoldin subunit 3	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex)
Niben101Scf00012g00010.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03006g06008.1	AT3G57050.1	****	cystathionine beta-lyase LENGTH=464	IPR000277 (Cys/Met metabolism, pyridoxal phosphate-dependent enzyme), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004121 (cystathionine beta-lyase activity), GO:0030170 (pyridoxal phosphate binding), GO:0071266 ('de novo' L-methionine biosynthetic process)
Niben101Scf09202g00006.1	AT5G18460.1	***-	Protein of Unknown Function (DUF239) LENGTH=430	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf07969g01026.1	sp|Q9XIE6|ALA3_ARATH	****	Phospholipid-transporting ATPase 3	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf05492g03003.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06027g01015.1	sp|Q3UHX2|HAP28_MOUSE	*-*-	28 kDa heat- and acid-stable phosphoprotein	IPR019380 (Casein kinase substrate, phosphoprotein PP28)	
Niben101Scf01024g02004.1	sp|B2RY50|ARMC4_MOUSE	*-*-	Armadillo repeat-containing protein 4	IPR004908 (ATPase, V1 complex, subunit H)	GO:0000221 (vacuolar proton-transporting V-type ATPase, V1 domain), GO:0005488 (binding), GO:0005515 (protein binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf12045g05008.1	AT1G54460.1	*-*-	TPX2 (targeting protein for Xklp2) protein family LENGTH=338	IPR027329 (TPX2, C-terminal domain)	
Niben101Scf00793g06004.1	sp|Q68DH5|LMBD2_HUMAN	--*-	LMBR1 domain-containing protein 2		
Niben101Scf00185g02011.1	gb|KEH22373.1|	--*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf02410g00002.1	sp|Q688M5|CHI9_ORYSJ	****	Chitinase 9	IPR016283 (Glycoside hydrolase, family 19), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf00436g10001.1	AT5G22875.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=69		
Niben101Scf13185g01008.1	sp|B0T3D1|SUCC_CAUSK	***-	Succinyl-CoA ligase [ADP-forming] subunit beta	IPR005809 (Succinyl-CoA synthetase, beta subunit), IPR016102 (Succinyl-CoA synthetase-like)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0008152 (metabolic process)
Niben101Scf00527g01006.1	gb|ABI34321.1|	--*-	RNase H family protein [Solanum demissum]		
Niben101Scf02917g00003.1	gb|KEH34602.1|	*-*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf01681g13001.1	sp|Q3J8A0|GPH_NITOC	***-	Phosphoglycolate phosphatase	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf03184g07008.1	sp|Q9LU68|CIA2_ARATH	***-	Protein CHLOROPLAST IMPORT APPARATUS 2		
Niben101Scf10545g00004.1	AT1G02816.1	***-	Protein of unknown function, DUF538 LENGTH=166	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf01024g04006.1	gb|KEH39046.1|	***-	wound-responsive family protein [Medicago truncatula]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf05047g04012.1	sp|P25802|CYSP1_OSTOS	*-**	Cathepsin B-like cysteine proteinase 1	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Ctg15426g00003.1	AT1G48540.1	*-*-	Outer arm dynein light chain 1 protein LENGTH=1063		
Niben101Scf15536g02019.1	sp|Q9SU50|TRE1_ARATH	****	Trehalase	IPR001661 (Glycoside hydrolase, family 37)	GO:0003824 (catalytic activity), GO:0004555 (alpha,alpha-trehalase activity), GO:0005991 (trehalose metabolic process)
Niben101Scf01771g01010.1	AT5G47310.1	***-	PPPDE putative thiol peptidase family protein LENGTH=245	IPR008580 (PPPDE putative peptidase domain)	
Niben101Ctg10245g00004.1	ref|XP_007039626.1|	*-*-	Pleckstrin (PH) domain-containing protein isoform 3 [Theobroma cacao] gb|EOY24127.1| Pleckstrin (PH) domain-containing protein isoform 3 [Theobroma cacao]	IPR010482 (Peroxin/Dysferlin domain), IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf16733g01013.1	AT5G08120.1	***-	movement protein binding protein 2C LENGTH=326		
Niben101Scf00595g01001.1	sp|Q6GFT0|ARSB_STAAR	--**	Arsenical pump membrane protein	IPR004680 (Citrate transporter-like domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf06767g00008.1	sp|O23144|PPI1_ARATH	*-*-	Proton pump-interactor 1		
Niben101Scf00063g05012.1	sp|Q9LZJ3|XXT1_ARATH	***-	Xyloglucan 6-xylosyltransferase 1	IPR008630 (Galactosyl transferase)	GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf09189g01006.1	sp|O59751|KLP6_SCHPO	*-**	Kinesin-like protein 6	IPR001752 (Kinesin motor domain), IPR016024 (Armadillo-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf07045g00002.1	AT4G28380.1	***-	Leucine-rich repeat (LRR) family protein LENGTH=391		
Niben101Scf05252g01001.1			Unknown protein		
Niben101Scf00820g02005.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00669g01007.1			Unknown protein		
Niben101Scf12177g00003.1	AT1G75000.1	****	GNS1/SUR4 membrane protein family LENGTH=281	IPR002076 (ELO family)	GO:0016021 (integral component of membrane)
Niben101Scf03671g02003.1	emb|CDY27712.1|	*-*-	BnaA05g31210D [Brassica napus]		
Niben101Scf14010g00010.1			Unknown protein		
Niben101Scf03506g03001.1	sp|Q9SSE5|COL9_ARATH	****	Zinc finger protein CONSTANS-LIKE 9	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf01362g02011.1	AT5G39865.1	***-	Glutaredoxin family protein LENGTH=390	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03445g06021.1	AT5G50130.1	*-*-	NAD(P)-binding Rossmann-fold superfamily protein LENGTH=339	IPR002347 (Glucose/ribitol dehydrogenase)	
Niben101Scf12581g00008.1	AT1G50310.1	****	sugar transporter 9 LENGTH=517	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03210g00011.1	sp|Q66KH2|ERGI3_XENLA	*-*-	Endoplasmic reticulum-Golgi intermediate compartment protein 3	IPR012936 (Endoplasmic reticulum vesicle transporter, C-terminal)	
Niben101Scf04869g07016.1	sp|Q9AKH1|FER2_RICRI	*-*-	2Fe-2S ferredoxin	IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf00654g02012.1	sp|G2K045|DNAJ_LISM4	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf09360g00016.1			Unknown protein		
Niben101Scf04697g02010.1	ref|NP_001060667.1|	*-*-	product [Oryza sativa Japonica Group]	IPR000772 (Ricin B lectin domain)	
Niben101Scf07788g01006.1	AT5G14020.1	***-	Endosomal targeting BRO1-like domain-containing protein LENGTH=401	IPR004328 (BRO1 domain)	
Niben101Scf02085g10002.1	sp|O80437|GPAT6_ARATH	***-	Glycerol-3-phosphate 2-O-acyltransferase 6	IPR023214 (HAD-like domain)	
Niben101Scf01318g01010.1	ref|NP_001154406.1|	--**	Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana] gb|ABE65693.1| hypothetical protein [Arabidopsis thaliana] gb|AEE32107.1| Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]	IPR018848 (WIYLD domain)	GO:0018024 (histone-lysine N-methyltransferase activity)
Niben101Scf02217g06006.1	sp|Q9LU15|AHP4_ARATH	***-	Histidine-containing phosphotransfer protein 4	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity)
Niben101Scf02264g04007.1			Unknown protein		
Niben101Scf02290g04003.1	sp|O95562|SFT2B_HUMAN	*-**	Vesicle transport protein SFT2B	IPR007305 (Vesicle transport protein, Got1/SFT2-like)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf34260g00005.1	AT3G51330.1	*-*-	Eukaryotic aspartyl protease family protein LENGTH=529		
Niben101Scf15054g03004.1	ref|NP_001046922.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf01395g04003.1	gb|AIU50567.1|	***-	accelerated cell death 11, partial [Theobroma cacao]	IPR014830 (Glycolipid transfer protein domain)	GO:0005737 (cytoplasm), GO:0017089 (glycolipid transporter activity), GO:0046836 (glycolipid transport), GO:0051861 (glycolipid binding)
Niben101Scf27226g00010.1	AT1G51580.1	****	RNA-binding KH domain-containing protein LENGTH=621	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf02160g06065.1	sp|Q94ZJ2|CYB_SCHCO	--*-	Cytochrome b		
Niben101Scf14412g00005.1			Unknown protein		
Niben101Scf01293g03012.1	AT4G31860.1	***-	Protein phosphatase 2C family protein LENGTH=357	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf02513g04004.1	ref|XP_007042979.1|	*-*-	Dentin sialoph -related, putative isoform 3 [Theobroma cacao]		
Niben101Scf03407g01003.1	sp|A7FHJ7|MDTK_YERP3	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf09248g03011.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02271g05005.1	emb|CDY19004.1|	***-	BnaC01g20640D [Brassica napus]		
Niben101Scf10878g00003.1	emb|CDX86543.1|	***-	BnaC08g01600D [Brassica napus]		
Niben101Scf01125g03020.1	sp|O04016|P5CR_ACTCH	****	Pyrroline-5-carboxylate reductase	IPR000304 (Pyrroline-5-carboxylate reductase), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like)	GO:0004735 (pyrroline-5-carboxylate reductase activity), GO:0006561 (proline biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf02466g04004.1	ref|XP_002533586.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF28791.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01187g01002.1	ref|YP_006291827.1|	*-*-	orf43 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81181.1| orf43 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf06059g01001.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR015300 (DNA-binding pseudobarrel domain), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08782g02018.1	AT3G16857.2	***-	response regulator 1 LENGTH=690	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily), IPR017053 (Response regulator, plant B-type)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04287g01008.1	sp|Q1PFK0|FBL32_ARATH	--*-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05689g02013.1	sp|P05488|RT13_TOBAC	*-*-	Ribosomal protein S13, mitochondrial		
Niben101Scf01063g10011.1	ref|NP_001065441.1|	--*-	[Oryza sativa Japonica Group] dbj|BAF27278.1| [Oryza sativa Japonica Group]	IPR008546 (Domain of unknown function DUF828)	
Niben101Scf02968g05006.1	AT4G22140.1	***-	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein LENGTH=234	IPR001025 (Bromo adjacent homology (BAH) domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02562g03010.1	ref|XP_007013620.1|	*-*-	Aldose 1-epimerase [Theobroma cacao] gb|EOY31239.1| Aldose 1-epimerase [Theobroma cacao]		
Niben101Scf00620g02006.1	sp|Q39255|SKP1A_ARATH	***-	SKP1-like protein 1A	IPR016072 (SKP1 component, dimerisation)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf03106g02001.1	AT5G43860.1	*-**	chlorophyllase 2 LENGTH=318	IPR010821 (Chlorophyllase)	GO:0015996 (chlorophyll catabolic process), GO:0047746 (chlorophyllase activity)
Niben101Scf03238g03011.1	gb|KEH27263.1|	--*-	substrate carrier family protein [Medicago truncatula]		
Niben101Scf10330g00003.1	sp|P0DI70|CSPL2_GINBI	***-	CASP-like protein 5A1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf04370g00025.1	sp|Q110B4|RL16_TRIEI	*-*-	50S ribosomal protein L16	IPR000114 (Ribosomal protein L16), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf05824g09018.1	sp|Q9FJL8|RP5L1_ARATH	****	DNA-directed RNA polymerase subunit 5-like protein 1	IPR014381 (DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus), IPR020609 (Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf00280g02014.1	sp|Q6DHL5|LRC57_DANRE	*-*-	Leucine-rich repeat-containing protein 57	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Scf01022g00004.1	sp|Q9FGY4|FB341_ARATH	--*-	F-box protein		
Niben101Scf11178g01001.1	sp|A0ZZ48|CYF_GOSBA	*-*-	Apocytochrome f	IPR002325 (Cytochrome f), IPR003359 (Photosystem I Ycf4, assembly), IPR004282 (Chloroplast envelope membrane protein, CemA), IPR024058 (Cytochrome f  transmembrane anchor), IPR024094 (Cytochrome f large domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0031361 (integral component of thylakoid membrane)
Niben101Scf03599g01016.1	sp|Q9P0L0|VAPA_HUMAN	****	Vesicle-associated membrane protein-associated protein A	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf02045g02003.1			Unknown protein		
Niben101Scf00124g00012.1	emb|CDX68206.1|	***-	BnaA07g22460D [Brassica napus]		
Niben101Scf01326g03002.1	sp|P81392|MYB06_ANTMA	***-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07823g00015.1	sp|Q11VB9|NUOH1_CYTH3	***-	NADH-quinone oxidoreductase subunit H 1	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf04955g02001.1	AT1G30040.1	***-	gibberellin 2-oxidase LENGTH=341	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf09455g01003.1	sp|A6MFK9|CRVP_DEMVE	***-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf02740g01001.1	sp|Q66H85|ANKZ1_RAT	*-*-	Ankyrin repeat and zinc finger domain-containing protein 1	IPR007087 (Zinc finger, C2H2), IPR020683 (Ankyrin repeat-containing domain)	GO:0046872 (metal ion binding)
Niben101Scf03711g01005.1	sp|Q9XEX2|PRX2B_ARATH	***-	Peroxiredoxin-2B	IPR012336 (Thioredoxin-like fold)	GO:0016491 (oxidoreductase activity)
Niben101Scf00337g05001.1	gb|KEH33525.1|	*-*-	late embryogenesis abundant protein [Medicago truncatula]	IPR004864 (Late embryogenesis abundant protein, LEA-14), IPR013783 (Immunoglobulin-like fold)	
Niben101Scf04329g05022.1	sp|Q1QBW0|MSBA_PSYCK	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf01933g09013.1	AT1G75150.1	*-*-	unknown protein; Has 38228 Blast hits to 24529 proteins in 1168 species: Archae - 169; Bacteria - 4103; Metazoa - 14594; Fungi - 5866; Plants - 1861; Viruses - 317; Other Eukaryotes - 11318 (source: NCBI BLink). LENGTH=784		
Niben101Scf04610g03021.1			Unknown protein		
Niben101Scf12405g00003.1	sp|Q8YM56|CLPB2_NOSS1	*-*-	Chaperone protein ClpB 2	IPR004176 (Clp, N-terminal), IPR023150 (Double Clp-N motif)	GO:0019538 (protein metabolic process)
Niben101Scf10970g00007.1	emb|CDY45481.1|	*-*-	BnaCnng12400D [Brassica napus]		
Niben101Scf12321g01010.1	sp|Q05967|PGLR_TOBAC	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04145g00026.1	sp|Q9FGY4|FB341_ARATH	*-*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf00289g01009.1	sp|Q8L9Y2|ELP6_ARATH	***-	Elongator complex protein 6	IPR018627 (Uncharacterised protein family UPF0405), IPR019519 (Elongator complex protein 5)	GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04813g00014.1	sp|O22126|FLA8_ARATH	***-	Fasciclin-like arabinogalactan protein 8	IPR000782 (FAS1 domain)	
Niben101Scf01220g00009.1	AT3G07030.1	*-**	Alba DNA/RNA-binding protein LENGTH=405	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Scf00109g10030.1	sp|P92792|TOM20_SOLTU	****	Mitochondrial import receptor subunit TOM20	IPR010547 (Plant specific mitochondrial import receptor subunit TOM20)	GO:0005515 (protein binding), GO:0005742 (mitochondrial outer membrane translocase complex), GO:0045040 (protein import into mitochondrial outer membrane)
Niben101Scf01269g00013.1	sp|Q9S1G2|DPO1_RHILE	*-**	DNA polymerase I	IPR002298 (DNA polymerase A)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication), GO:0006261 (DNA-dependent DNA replication)
Niben101Scf00402g05011.1	sp|Q8PHL5|SUCC_XANAC	***-	Succinyl-CoA ligase [ADP-forming] subunit beta	IPR013650 (ATP-grasp fold, succinyl-CoA synthetase-type), IPR016102 (Succinyl-CoA synthetase-like)	GO:0005524 (ATP binding)
Niben101Scf01517g04012.1	sp|P42731|PABP2_ARATH	--**	Polyadenylate-binding protein 2	IPR009818 (Ataxin-2, C-terminal), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Ctg15709g00002.1	AT2G20790.1	*-*-	clathrin adaptor complexes medium subunit family protein LENGTH=613		
Niben101Scf07631g00002.1	ref|WP_017325952.1|	--*-	high light inducible protein [Synechococcus sp. PCC 7336]	IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf02139g07002.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Ctg15677g00002.1			Unknown protein		
Niben101Scf08817g01016.1	gb|KFB85176.1|	***-	haloacid dehalogenase [Calothrix sp. 336/3]	IPR023214 (HAD-like domain)	
Niben101Scf07798g01001.1	AT1G17440.1	*-**	Transcription initiation factor TFIID subunit A LENGTH=683	IPR009072 (Histone-fold)	GO:0005669 (transcription factor TFIID complex), GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity)
Niben101Scf04995g14009.1			Unknown protein		
Niben101Scf00144g03005.1	sp|O74942|CYP9_SCHPO	*-**	Peptidyl-prolyl cis-trans isomerase 9	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf00351g03005.1	sp|Q9FLG1|BXL4_ARATH	***-	Beta-D-xylosidase 4	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03226g01001.1			Unknown protein		
Niben101Scf09701g03004.1	sp|E9QAU8|RN165_MOUSE	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03279g03019.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf09123g00004.1	sp|B0TI32|ACCA_HELMI	*-**	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	IPR001095 (Acetyl-CoA carboxylase, alpha subunit), IPR011763 (Acetyl-coenzyme A carboxyltransferase, C-terminal), IPR029045 (ClpP/crotonase-like domain)	GO:0003989 (acetyl-CoA carboxylase activity), GO:0006633 (fatty acid biosynthetic process), GO:0009317 (acetyl-CoA carboxylase complex), GO:0016874 (ligase activity)
Niben101Scf03070g02003.1			Unknown protein		
Niben101Scf10132g01027.1	emb|CDY20964.1|	***-	BnaA08g25610D [Brassica napus]		
Niben101Scf02203g05002.1	sp|Q01559|HMDH_NICSY	****	3-hydroxy-3-methylglutaryl-coenzyme A reductase	IPR002202 (Hydroxymethylglutaryl-CoA reductase, class I/II), IPR023074 (Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain), IPR023282 (Hydroxymethylglutaryl-CoA reductase, N-terminal)	GO:0004420 (hydroxymethylglutaryl-CoA reductase (NADPH) activity), GO:0008299 (isoprenoid biosynthetic process), GO:0015936 (coenzyme A metabolic process), GO:0016021 (integral component of membrane), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050661 (NADP binding), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03600g03004.1	sp|P35817|BDF1_YEAST	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf01314g00017.1	sp|C1DFM2|DNAJ_AZOVD	--*-	Chaperone protein DnaJ	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf00345g01007.1	sp|Q5R8E2|KLC3_PONAB	*-*-	Kinesin light chain 3	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05948g02024.1	sp|Q7WKG2|AQPZ_BORBR	***-	Aquaporin Z	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf07499g00003.1	sp|Q13636|RAB31_HUMAN	***-	Ras-related protein Rab-31	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf18384g00002.1	AT4G34580.1	*-*-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=554	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf09678g01011.1	AT2G38070.1	***-	Protein of unknown function (DUF740) LENGTH=619	IPR008004 (Uncharacterised protein family UPF0503)	
Niben101Scf00568g04029.1	sp|Q06GY9|RBL_DRIGR	*-**	Ribulose bisphosphate carboxylase large chain	IPR000685 (Ribulose bisphosphate carboxylase, large subunit, C-terminal), IPR017443 (Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf02194g00016.1	AT2G37710.1	*-**	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf15049g00002.1	AT3G06730.1	***-	Thioredoxin z LENGTH=183	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00367g02012.1	sp|Q6RZZ9|KIF13_DICDI	*-**	Kinesin-related protein 13	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf09575g01010.1	ref|NP_001065962.1|	***-	product [Oryza sativa Japonica Group]	IPR012908 (GPI inositol-deacylase PGAP1-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006505 (GPI anchor metabolic process), GO:0006886 (intracellular protein transport), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02759g01002.1	sp|Q17TI5|BRX_ARATH	***-	Protein BREVIS RADIX	IPR013591 (Brevis radix (BRX) domain), IPR027988 (Transcription factor  BREVIS RADIX, N-terminal domain)	
Niben101Scf07516g02005.1	ref|XP_003626920.1|	--**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf06649g03005.1	sp|Q9Y580|RBM7_HUMAN	--**	RNA-binding protein 7	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03607g01014.1	sp|Q9ZPV5|NOC2L_ARATH	***-	Nucleolar complex protein 2 homolog	IPR005343 (Nucleolar complex protein 2)	
Niben101Scf05737g00011.1	AT4G16580.1	*-*-	Protein phosphatase 2C family protein LENGTH=467	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf14977g00028.1	sp|Q7MG84|PCP_VIBVY	****	Pyrrolidone-carboxylate peptidase	IPR016125 (Peptidase C15, pyroglutamyl peptidase I-like)	GO:0005829 (cytosol), GO:0006508 (proteolysis), GO:0016920 (pyroglutamyl-peptidase activity)
Niben101Scf05135g00005.1	ref|XP_010107860.1|	****	Ph phosphatase PTEN [Morus notabilis]	IPR016130 (Protein-tyrosine phosphatase, active site), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf00579g02008.1	ref|XP_002527227.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35153.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04602g00002.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf07584g02007.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00225g06014.1	gb|AFW90605.1|	***-	Avr9/Cf-9 rapidly elicited protein 65 [Solanum tuberosum]		
Niben101Scf03548g02037.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf13455g00002.1			Unknown protein		
Niben101Scf08700g00008.1	sp|Q39265|ZFP6_ARATH	--*-	Zinc finger protein 6	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00425g03029.1	sp|P49914|MTHFS_HUMAN	***-	5-formyltetrahydrofolate cyclo-ligase	IPR002698 (5-formyltetrahydrofolate cyclo-ligase), IPR024185 (5-formyltetrahydrofolate cyclo-ligase-like domain)	
Niben101Scf05166g00007.1			Unknown protein		
Niben101Scf04784g03009.1	emb|CAD41337.2|	*-*-	OJ991113_30.21 [Oryza sativa Japonica Group]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf01372g00001.1	sp|Q9FIX3|PP407_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00401g01015.1	sp|Q1HDT2|CHX24_ARATH	****	Cation/H(+) antiporter 24	IPR006153 (Cation/H+ exchanger), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf06560g01004.1	sp|Q10CQ1|MAD14_ORYSJ	****	MADS-box transcription factor 14	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf06782g02026.1	gb|KEH30155.1|	*-*-	ENTH/VHS family protein [Medicago truncatula]	IPR008942 (ENTH/VHS)	
Niben101Scf05087g02009.1	sp|P70581|NUPL1_RAT	--*-	Nucleoporin p58/p45	IPR024882 (Nucleoporin p58/p45)	GO:0005643 (nuclear pore), GO:0006913 (nucleocytoplasmic transport)
Niben101Scf03541g00034.1			Unknown protein		
Niben101Scf04875g05009.1	ref|NP_568122.2|	*-**	nucleobase:cation symporter-1 [Arabidopsis thaliana] emb|CAB83318.1| uracil transporter-like protein [Arabidopsis thaliana] gb|AED90625.1| nucleobase:cation symporter-1 [Arabidopsis thaliana]	IPR001248 (Permease, cytosine/purines, uracil, thiamine, allantoin)	GO:0015205 (nucleobase transmembrane transporter activity), GO:0015851 (nucleobase transport), GO:0016020 (membrane)
Niben101Scf00397g11023.1	AT3G59920.1	****	RAB GDP dissociation inhibitor 2 LENGTH=444	IPR018203 (GDP dissociation inhibitor)	GO:0005093 (Rab GDP-dissociation inhibitor activity), GO:0015031 (protein transport)
Niben101Scf10489g00006.1	AT3G17690.1	*-*-	cyclic nucleotide gated channel 19 LENGTH=729	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf06068g01005.1	AT4G32690.1	***-	hemoglobin 3 LENGTH=175	IPR001486 (Globin, truncated bacterial-like), IPR009050 (Globin-like)	GO:0005506 (iron ion binding), GO:0015671 (oxygen transport), GO:0019825 (oxygen binding), GO:0020037 (heme binding)
Niben101Scf00367g03013.1	sp|Q8S403|PHO1_ARATH	*-*-	Phosphate transporter PHO1	IPR004331 (SPX, N-terminal)	
Niben101Scf00765g02006.1	emb|CDY01886.1|	***-	BnaC06g29260D [Brassica napus]	IPR008011 (Complex 1 LYR protein)	
Niben101Scf06091g00008.1	sp|Q6FTZ3|MSS11_CANGA	--*-	Transcription activator MSS11		
Niben101Scf00988g01005.1	sp|Q8R3Q2|PP6R2_MOUSE	*-*-	Serine/threonine-protein phosphatase 6 regulatory subunit 2	IPR007587 (SIT4 phosphatase-associated protein family)	
Niben101Scf00493g00006.1	sp|O52177|RELA_MYXXA	*-*-	GTP pyrophosphokinase	IPR003607 (HD/PDEase domain)	
Niben101Scf12801g00006.1	gb|AES69785.2|	***-	alpha/beta fold hydrolase [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf08206g01007.1	sp|Q9SU44|GRF8_ARATH	*-*-	Growth-regulating factor 8	IPR014977 (WRC)	
Niben101Scf03528g03001.1	AT2G02450.2	*-*-	NAC domain containing protein 35 LENGTH=414	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01082g03009.1	sp|P10973|NLTPA_RICCO	*-**	Non-specific lipid-transfer protein A	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf05732g02008.1			Unknown protein		
Niben101Scf05938g01027.1	emb|CDY08660.1|	*-*-	BnaC04g19690D [Brassica napus]	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf18540g00015.1			Unknown protein		
Niben101Scf03979g05016.1	AT1G68050.1	****	flavin-binding, kelch repeat, f box 1 LENGTH=619	IPR000014 (PAS domain), IPR001810 (F-box domain), IPR015915 (Kelch-type beta propeller)	GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0007165 (signal transduction)
Niben101Scf01392g01024.1	sp|Q9W4D2|RNP4F_DROME	--**	RNA-binding protein 4F	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR024888 (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'')	GO:0000166 (nucleotide binding), GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0017069 (snRNA binding)
Niben101Scf04219g01028.1	AT1G16800.1	*-*-	P-loop containing nucleoside triphosphate hydrolases superfamily protein LENGTH=2127	IPR026852 (Helicase Sen1-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03864g02002.1			Unknown protein		
Niben101Scf01374g05001.1	sp|O80340|ERF78_ARATH	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00293g03001.1	sp|Q800K6|TOB1A_XENLA	*-*-	DNA topoisomerase 2-binding protein 1-A	IPR001357 (BRCT domain)	
Niben101Scf02830g00008.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf02429g07037.1	sp|Q9LJW0|PHO19_ARATH	****	Phosphate transporter PHO1 homolog 9	IPR004331 (SPX, N-terminal), IPR004342 (EXS, C-terminal), IPR008689 (ATPase, F0 complex, subunit D, mitochondrial)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0016021 (integral component of membrane)
Niben101Scf00175g02009.1	AT3G21760.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=485	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04418g07006.1			Unknown protein		
Niben101Scf02203g01009.1	sp|O22757|MLO8_ARATH	***-	MLO-like protein 8	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf08575g02003.1	sp|B9J2F2|MENE_BACCQ	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf02903g03001.1	sp|Q9CR42|ANKR1_MOUSE	*-*-	Ankyrin repeat domain-containing protein 1	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Ctg13995g00003.1	sp|Q84M24|AB1A_ARATH	*-*-	ABC transporter A family member 1		
Niben101Scf03693g04006.1	sp|Q9FGY4|FB341_ARATH	*-*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf16127g00013.1	sp|Q8LE94|RING3_ARATH	--*-	E3 ubiquitin-protein ligase	IPR002483 (PWI domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0006397 (mRNA processing), GO:0008270 (zinc ion binding)
Niben101Scf01817g00003.1	AT3G55570.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=109		
Niben101Scf11693g00002.1	emb|CDX67475.1|	***-	BnaA07g15150D [Brassica napus]	IPR026797 (HAUS augmin-like complex subunit 6), IPR028163 (HAUS augmin-like complex subunit 6, N-terminal)	GO:0051225 (spindle assembly), GO:0051297 (centrosome organization), GO:0070652 (HAUS complex)
Niben101Scf00574g02008.1	AT1G69430.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=350		
Niben101Scf03388g00001.1	ref|NP_001150011.1|	***-	sap [Zea mays]	IPR011001 (Saposin-like)	GO:0006629 (lipid metabolic process)
Niben101Scf01061g03006.1	gb|AIU50567.1|	***-	accelerated cell death 11, partial [Theobroma cacao]	IPR014830 (Glycolipid transfer protein domain)	GO:0005737 (cytoplasm), GO:0017089 (glycolipid transporter activity), GO:0046836 (glycolipid transport), GO:0051861 (glycolipid binding)
Niben101Scf00854g11058.1	sp|Q07596|NISP_LACLL	--*-	Nisin leader peptide-processing serine protease NisP		
Niben101Scf02658g01008.1	sp|Q9SS03|DIR21_ARATH	***-	Dirigent protein 21	IPR004265 (Plant disease resistance response protein)	
Niben101Scf03915g01007.1	sp|Q72GU1|ODBA_THET2	***-	2-oxoisovalerate dehydrogenase subunit alpha	IPR001017 (Dehydrogenase, E1 component), IPR029061 (Thiamin diphosphate-binding fold)	GO:0008152 (metabolic process), GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor)
Niben101Scf15326g00001.1	sp|Q8VYE5|E1312_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 12	IPR012946 (X8 domain)	
Niben101Scf14632g00003.1	ref|XP_002524407.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF38018.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf01462g02025.1	sp|Q7VQW9|HIS8_BLOFL	*-**	Histidinol-phosphate aminotransferase	IPR021178 (Tyrosine transaminase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00597g00007.1	sp|O48850|VA725_ARATH	****	Vesicle-associated membrane protein 725	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf02736g06008.1	sp|Q9ZEJ7|ISPT_ANAVT	*-**	Isoprenyl transferase	IPR001441 (Decaprenyl diphosphate synthase-like)	GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf04386g02001.1	AT1G51170.1	****	Protein kinase superfamily protein LENGTH=404	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02044g12006.1			Unknown protein		
Niben101Scf01986g00011.1	sp|Q9FGZ9|UBL5_ARATH	***-	Ubiquitin-like protein 5	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf03831g00002.1	gb|ADV59369.1|	*-*-	GAGA-binding transcriptional activator [Artemisia annua]	IPR010409 (GAGA-binding transcriptional activator)	
Niben101Scf07395g00027.1	ref|WP_025658802.1|	--*-	alkylhydroperoxidase [Rhizobium sp. IBUN]		
Niben101Scf07203g03007.1	sp|Q9SS44|TF2B2_ARATH	****	Transcription initiation factor IIB-2	IPR000812 (Transcription factor TFIIB)	GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0017025 (TBP-class protein binding)
Niben101Scf05272g03006.1	sp|Q9SY02|PP301_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf05678g01001.1	gb|ABB69784.1|	****	beta-glucan-binding protein 4 [Medicago truncatula]	IPR005200 (Endo-1,3(4)-beta-glucanase)	GO:0016998 (cell wall macromolecule catabolic process), GO:0052861 (glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group), GO:0052862 (glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group)
Niben101Scf03238g00022.1	sp|Q9CAM7|RFC2_ARATH	***-	Replication factor C subunit 2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf12540g00015.1	AT5G54855.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=146	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf04329g02003.1	ref|WP_017390585.1|	***-	glutathione S-transferase [Acinetobacter calcoaceticus]	IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf03374g06011.1	sp|O60124|RRP42_SCHPO	--*-	Exosome complex component rrp42	IPR015847 (Exoribonuclease, phosphorolytic domain 2), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027408 (PNPase/RNase PH domain)	
Niben101Scf02563g03002.1	sp|Q9SCQ7|AN32_ARATH	*-*-	Acidic leucine-rich nuclear phosphoprotein 32-related protein	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf04724g06007.1	gb|AFW59909.1|	***-	fiber protein Fb34 [Zea mays]	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf13394g00012.1	sp|Q9SUT9|RTNLB_ARATH	***-	Reticulon-like protein B2	IPR003388 (Reticulon)	
Niben101Scf01024g00003.1			Unknown protein		
Niben101Scf10730g00004.1	AT4G08510.1	*-*-	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=551		
Niben101Scf11884g00019.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01611g03016.1	AT5G11580.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=553	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf03479g02007.1	sp|Q0H904|XYNC_ASPFU	*-*-	Endo-1,4-beta-xylanase C	IPR001000 (Glycoside hydrolase, family 10), IPR008979 (Galactose-binding domain-like), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04359g00005.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf01109g03002.1	sp|Q5ZML3|SRSF1_CHICK	***-	Serine/arginine-rich splicing factor 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07327g02003.1			Unknown protein		
Niben101Scf08516g02009.1			Unknown protein		
Niben101Scf06806g01001.1	AT2G44010.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=101		
Niben101Scf05929g02001.1	sp|E9QAU8|RN165_MOUSE	*-*-	RING finger protein 165	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04339g07004.1	AT3G20390.1	***-	endoribonuclease L-PSP family protein LENGTH=187	IPR006175 (YjgF/Yer057p/UK114 family), IPR013813 (Endoribonuclease L-PSP/chorismate mutase-like)	GO:0019239 (deaminase activity)
Niben101Scf02317g00011.1	sp|B2SGV9|GRPE_FRATM	*-*-	Protein GrpE	IPR000740 (GrpE nucleotide exchange factor)	GO:0000774 (adenyl-nucleotide exchange factor activity), GO:0006457 (protein folding), GO:0042803 (protein homodimerization activity), GO:0051087 (chaperone binding)
Niben101Scf04181g00024.1	sp|Q67ZB3|FRL3_ARATH	***-	FRIGIDA-like protein 3	IPR012474 (Frigida-like)	
Niben101Scf16439g00006.1	emb|CDY14988.1|	***-	BnaA10g08680D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf13379g00005.1	emb|CDY53256.1|	***-	BnaA02g03980D [Brassica napus]		
Niben101Scf07590g06001.1	AT1G64720.1	****	Polyketide cyclase/dehydrase and lipid transport superfamily protein LENGTH=385	IPR002913 (START domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf12404g00003.1	sp|A8FCG5|MTNA_BACP2	*-*-	Methylthioribose-1-phosphate isomerase	IPR000649 (Initiation factor 2B-related)	GO:0044237 (cellular metabolic process)
Niben101Scf11235g01006.1	sp|Q60EY8|CIPKK_ORYSJ	*-**	CBL-interacting protein kinase 20	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04107g01012.1	sp|A5US49|LIPB_ROSS1	****	Octanoyltransferase	IPR000544 (Octanoyltransferase)	GO:0005737 (cytoplasm), GO:0006464 (cellular protein modification process), GO:0009107 (lipoate biosynthetic process), GO:0016415 (octanoyltransferase activity)
Niben101Scf02790g00002.1	sp|Q70Z19|NAP1A_TOBAC	****	Nucleosome assembly protein 1;1	IPR002164 (Nucleosome assembly protein (NAP))	GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf00809g01011.1	prf||1808322A	****	stearoyl-acyl carrier protein desaturase	IPR005067 (Fatty acid desaturase, type 2), IPR009078 (Ferritin-like superfamily)	GO:0006631 (fatty acid metabolic process), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0045300 (acyl-[acyl-carrier-protein] desaturase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09130g03012.1	sp|Q5XEM9|ALFL5_ARATH	***-	PHD finger protein ALFIN-LIKE 5	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR021998 (Alfin)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0042393 (histone binding)
Niben101Scf00893g00004.1	sp|Q8GY61|BH063_ARATH	*-*-	Transcription factor bHLH63	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04939g00002.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06291g03004.1	sp|Q5NVN8|RFOX1_PONAB	--**	RNA binding protein fox-1 homolog 1	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00088g00010.1	sp|Q5BQN5|WAP_SOLLC	***-	WPP domain-associated protein		
Niben101Scf04815g01012.1	AT5G36930.2	***-	Disease resistance protein (TIR-NBS-LRR class) family LENGTH=1191	IPR000157 (Toll/interleukin-1 receptor homology (TIR) domain), IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0043531 (ADP binding)
Niben101Scf00953g00005.1	sp|Q4WKB9|CWC22_ASPFU	*-*-	Pre-mRNA-splicing factor cwc22	IPR003891 (Initiation factor eIF-4 gamma, MA3)	
Niben101Scf00967g00001.1	ref|XP_003588352.1|	*-*-	NADH dehydrogenase subunit [Medicago truncatula]		
Niben101Ctg15752g00002.1	ref|XP_003601043.1|	*-*-	ATPase family AAA domain-containing protein [Medicago truncatula]		
Niben101Scf19421g00010.1	AT5G20220.1	*-*-	zinc knuckle (CCHC-type) family protein LENGTH=393		
Niben101Scf03194g01040.1	AT5G62540.1	***-	ubiquitin-conjugating enzyme 3 LENGTH=150	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf15116g00009.1	sp|Q8VYK4|NFYB8_ARATH	--*-	Nuclear transcription factor Y subunit B-8		
Niben101Scf11693g00001.1	sp|Q9LU89|2A5N_ARATH	****	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf04724g06005.1	ref|XP_002532100.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF30290.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08305g00004.1			Unknown protein		
Niben101Scf07231g02009.1	sp|Q9SEL5|VTI12_ARATH	*-*-	Vesicle transport v-SNARE 12		
Niben101Scf04091g00020.1	sp|O14368|HSP16_SCHPO	-**-	Heat shock protein 16	IPR008978 (HSP20-like chaperone)	
Niben101Scf03894g04004.1	emb|CDX73027.1|	***-	BnaC06g34750D [Brassica napus]		
Niben101Scf01463g04006.1	AT3G48050.1	***-	BAH domain ;TFIIS helical bundle-like domain LENGTH=1613	IPR001025 (Bromo adjacent homology (BAH) domain), IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf06513g00009.1	sp|Q01490|PPIB_ORPSP	****	Peptidyl-prolyl cis-trans isomerase B	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf06200g03020.1	sp|Q00766|PHS1_DICDI	*-**	Glycogen phosphorylase 1	IPR000811 (Glycosyl transferase, family 35), IPR002912 (ACT domain)	GO:0005975 (carbohydrate metabolic process), GO:0008152 (metabolic process), GO:0008184 (glycogen phosphorylase activity), GO:0016597 (amino acid binding)
Niben101Scf04567g03031.1	sp|Q6DCC7|LYSM4_XENLA	*-*-	LysM and putative peptidoglycan-binding domain-containing protein 4	IPR018392 (LysM domain)	
Niben101Scf05360g00003.1	AT1G66180.1	***-	Eukaryotic aspartyl protease family protein LENGTH=430	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06004g00037.1	sp|Q9SUD8|PP340_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04018g09004.1	sp|Q58860|THRC_METJA	***-	Threonine synthase	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme), IPR004450 (Threonine synthase-like)	GO:0006520 (cellular amino acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03111g01022.1	gb|KEH32530.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf08167g04004.1			Unknown protein		
Niben101Scf05295g03002.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf01469g06006.1	emb|CDY49842.1|	-**-	BnaC02g44010D [Brassica napus]		
Niben101Scf05034g04004.1	sp|Q9ZU11|ATB15_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-15	IPR002913 (START domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf01781g00010.1	sp|Q8LDN4|CLE46_ARATH	--*-	CLAVATA3/ESR (CLE)-related protein 46		
Niben101Scf00854g04002.1	sp|A0MSJ1|CRA1B_DANRE	--*-	Collagen alpha-1(XXVII) chain B		
Niben101Scf02002g01027.1			Unknown protein		
Niben101Scf03474g03010.1	sp|Q9FJL0|SMC4_ARATH	***-	Structural maintenance of chromosomes protein 4	IPR003395 (RecF/RecN/SMC, N-terminal), IPR010935 (SMCs flexible hinge), IPR024704 (Structural maintenance of chromosomes protein), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0051276 (chromosome organization)
Niben101Scf01678g04006.1			Unknown protein		
Niben101Scf05404g05006.1	sp|P0CI03|PTR28_ARATH	*-*-	Protein NRT1/ PTR FAMILY 5.6	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf06024g00003.1	sp|C4ZXE2|GHRB_ECOBW	****	Glyoxylate/hydroxypyruvate reductase B	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00663g02001.1			Unknown protein		
Niben101Scf20949g00001.1	sp|Q6VAM4|MAD23_ORYSJ	*-*-	MADS-box transcription factor 23	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf23175g00004.1	AT5G06610.1	***-	Protein of unknown function (DUF620) LENGTH=368	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf08527g01015.1			Unknown protein		
Niben101Scf02569g00024.1	gb|AHA85605.1|	*-*-	Ycf1, partial (chloroplast) [Solanum corymbosum]		
Niben101Scf02215g02001.1	sp|Q94AS5|ICME_ARATH	***-	Isoprenylcysteine alpha-carbonyl methylesterase ICME	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf00897g02013.1	sp|Q9FPS4|UBP23_ARATH	*-**	Ubiquitin carboxyl-terminal hydrolase 23	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf04053g02008.1	sp|Q7YT83|TX31_CONTE	***-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf05645g00006.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf01264g02001.1	sp|Q7X7A9|FB4_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf17514g00002.1	AT4G00820.1	***-	IQ-domain 17 LENGTH=534	IPR025064 (Domain of unknown function DUF4005)	
Niben101Scf06221g04005.1			Unknown protein		
Niben101Scf00884g00022.1	ref|NP_001052262.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf06836g01010.1	sp|P52550|MYBA_CHICK	*-*-	Myb-related protein A	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00964g02001.1			Unknown protein		
Niben101Scf00176g10006.1	sp|Q9LJU0|CBL10_ARATH	***-	COBRA-like protein 10	IPR006918 (COBRA, plant), IPR012291 (Cellulose-binding family II/chitobiase, carbohydrate-binding domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0030247 (polysaccharide binding), GO:0031225 (anchored component of membrane)
Niben101Scf02171g00007.1	gb|AAT40038.1|	****	chitinase [Zea mays subsp. parviglumis]	IPR016283 (Glycoside hydrolase, family 19), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process), GO:0008061 (chitin binding), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf05419g00007.1	AT3G22425.2	****	imidazoleglycerol-phosphate dehydratase LENGTH=270	IPR000807 (Imidazoleglycerol-phosphate dehydratase)	GO:0000105 (histidine biosynthetic process), GO:0004424 (imidazoleglycerol-phosphate dehydratase activity)
Niben101Scf07278g00007.1	AT1G49720.2	****	abscisic acid responsive element-binding factor 1 LENGTH=403	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09589g00006.1	AT2G26330.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=976	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf02694g04001.1	AT4G37650.1	****	GRAS family transcription factor LENGTH=531	IPR005202 (Transcription factor GRAS), IPR030019 (Protein short-root)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0008356 (asymmetric cell division), GO:0009956 (radial pattern formation), GO:0043565 (sequence-specific DNA binding), GO:0048366 (leaf development)
Niben101Scf00560g09004.1			Unknown protein		
Niben101Scf02298g02003.1	sp|Q8L7G3|CRK7_ARATH	*-*-	Cysteine-rich receptor-like protein kinase 7	IPR002902 (Gnk2-homologous domain)	
Niben101Scf02825g00023.1	AT4G00905.1	***-	NC domain-containing protein-related LENGTH=263	IPR007053 (LRAT-like domain)	
Niben101Scf02131g00001.1	sp|Q653H7|ARFR_ORYSJ	****	Auxin response factor 18	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf02730g01012.1	AT5G40270.1	*-*-	HD domain-containing metal-dependent phosphohydrolase family protein LENGTH=473		
Niben101Scf01302g01001.1	sp|Q5A4W8|BDF1_CANAL	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf04697g00007.1	AT4G38120.1	*-*-	ARM repeat superfamily protein LENGTH=1165		
Niben101Scf10595g00010.1	sp|P54873|HMCS_ARATH	*-**	Hydroxymethylglutaryl-CoA synthase	IPR013528 (Hydroxymethylglutaryl-coenzyme A synthase, N-terminal)	GO:0003824 (catalytic activity), GO:0004421 (hydroxymethylglutaryl-CoA synthase activity), GO:0008152 (metabolic process), GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf01519g03014.1	AT2G39130.1	***-	Transmembrane amino acid transporter family protein LENGTH=550	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf00606g03012.1	sp|Q8VZA1|LAC11_ARATH	***-	Laccase-11	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00468g01006.1	sp|Q9SNC3|FLA4_ARATH	***-	Fasciclin-like arabinogalactan protein 4	IPR000782 (FAS1 domain)	
Niben101Scf01579g01040.1	sp|Q9LFC5|PP360_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02160g06021.1			Unknown protein		
Niben101Scf01177g04029.1	sp|Q9LW48|ERF5_NICSY	*-**	Ethylene-responsive transcription factor 5	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain), IPR016177 (DNA-binding domain), IPR024729 (ICP0-binding domain of Ubiquitin-specific protease 7), IPR029346 (Ubiquitin carboxyl-terminal hydrolase, C-terminal)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00854g09083.1	sp|P09003|MI25_TOBAC	*-**	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf01055g02002.1	sp|Q9LSD8|MUB4_ARATH	***-	Membrane-anchored ubiquitin-fold protein 4	IPR017000 (Membrane-anchored ubiquitin-fold protein, HCG-1), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf05890g02025.1	sp|P86245|TCPB_MESAU	*-*-	T-complex protein 1 subunit beta (Fragments)	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf02316g03044.1	sp|Q2TA10|UB2D1_BOVIN	***-	Ubiquitin-conjugating enzyme E2 D1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf37365g00007.1	emb|CDX77245.1|	***-	BnaC08g02900D [Brassica napus]	IPR006904 (Protein of unknown function DUF716 (TMEM45))	
Niben101Scf27753g00017.1	sp|Q9SWB6|PM36_SOYBN	***-	Seed maturation protein PM36	IPR016084 (Haem oxygenase-like, multi-helical)	
Niben101Scf01763g00018.1	sp|Q5W274|PDR3_TOBAC	*-*-	Pleiotropic drug resistance protein 3	IPR013525 (ABC-2 type transporter)	GO:0016020 (membrane)
Niben101Scf03607g01016.1	sp|Q3TUH1|TAM41_MOUSE	*-*-	Phosphatidate cytidylyltransferase, mitochondrial	IPR015222 (Mitochondrial matrix Mmp37)	
Niben101Scf00618g01002.1	AT1G49760.1	*-**	poly(A) binding protein 8 LENGTH=671	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03944g05010.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf04716g00010.1			Unknown protein		
Niben101Scf02305g01007.1	AT1G65790.1	*-**	receptor kinase 1 LENGTH=843	IPR011009 (Protein kinase-like domain), IPR021820 (S-locus receptor kinase, C-terminal)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06863g01001.1	sp|Q6EP49|MAD27_ORYSJ	*-*-	MADS-box transcription factor 27	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03631g01028.1	AT2G30600.5	***-	BTB/POZ domain-containing protein LENGTH=855	IPR011333 (BTB/POZ fold), IPR011705 (BTB/Kelch-associated), IPR022041 (Farnesoic acid O-methyl transferase)	GO:0005515 (protein binding)
Niben101Scf05395g01008.1	pdb|4BM5|A	*-*-	Chain A, Chloroplast Inner Membrane Protein Tic110		
Niben101Scf04007g02009.1	sp|Q4PFA5|UBC2_USTMA	*-*-	Ubiquitin-conjugating enzyme E2 2	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site), IPR027230 (SUMO-conjugating enzyme Ubc9)	GO:0019789 (SUMO transferase activity)
Niben101Scf06458g01001.1	sp|Q54UC9|KIF3_DICDI	*-**	Kinesin-related protein 3	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf15579g01002.1	emb|CDX86439.1|	***-	BnaA06g31560D [Brassica napus]		
Niben101Scf06023g03015.1	sp|P15922|PEHX_DICCH	*-*-	Exo-poly-alpha-D-galacturonosidase	IPR011050 (Pectin lyase fold/virulence factor)	
Niben101Scf08566g02013.1	sp|Q7XJE6|MCA1_ARATH	***-	Metacaspase-1	IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf10041g00012.1	sp|Q9LRE6|DPOD1_ORYSJ	*-**	DNA polymerase delta catalytic subunit	IPR006172 (DNA-directed DNA polymerase, family B), IPR023211 (DNA polymerase, palm domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity)
Niben101Scf02603g01014.1			Unknown protein		
Niben101Scf00163g21004.1			Unknown protein		
Niben101Scf05720g01002.1	AT4G22000.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=130		
Niben101Scf02074g06067.1	sp|A4SXQ3|NUOA_POLSQ	*-**	NADH-quinone oxidoreductase subunit A	IPR000440 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06825g01018.1	sp|Q9FN08|BGA10_ARATH	***-	Beta-galactosidase 10	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf01514g05003.1	emb|CDX86543.1|	***-	BnaC08g01600D [Brassica napus]		
Niben101Scf06782g02025.1	sp|Q8GZ84|PUB36_ARATH	--*-	U-box domain-containing protein 36		
Niben101Scf02759g02003.1	sp|Q5JTN6|WDR38_HUMAN	*-*-	WD repeat-containing protein 38	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03944g02008.1	sp|Q9ZWC5|SCL18_ARATH	***-	Scarecrow-like protein 18	IPR005202 (Transcription factor GRAS)	
Niben101Scf01297g04007.1	sp|Q84TX2|SCRL1_ORYSJ	*-*-	SCAR-like protein 1	IPR003124 (WH2 domain), IPR028288 (SCAR/WAVE family)	GO:0003779 (actin binding), GO:0005856 (cytoskeleton), GO:0030036 (actin cytoskeleton organization)
Niben101Scf07668g00028.1	AT3G07170.1	***-	Sterile alpha motif (SAM) domain-containing protein LENGTH=203	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf00197g01018.1	sp|Q944S9|MAD16_ORYSJ	****	MADS-box transcription factor 16	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf04233g00009.1	AT5G46530.1	***-	AWPM-19-like family protein LENGTH=157	IPR008390 (AWPM-19-like)	
Niben101Scf03129g05007.1	ref|XP_002533422.1|	*-**	50S rib L7/L12, putative [Ricinus communis]	IPR008932 (Ribosomal protein L7/L12, oligomerisation)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03693g08008.1	AT4G36710.1	***-	GRAS family transcription factor LENGTH=486	IPR005202 (Transcription factor GRAS)	
Niben101Scf04288g01008.1	sp|P40339|RFC4_YEAST	*-**	Replication factor C subunit 4	IPR012178 (DNA replication factor C, large subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003689 (DNA clamp loader activity), GO:0005524 (ATP binding), GO:0005663 (DNA replication factor C complex), GO:0006260 (DNA replication)
Niben101Scf04608g05008.1	AT5G04830.1	***-	Nuclear transport factor 2 (NTF2) family protein LENGTH=178		
Niben101Scf00132g03015.1	sp|B7KD42|RS6_CYAP7	*-*-	30S ribosomal protein S6	IPR000529 (Ribosomal protein S6), IPR014717 (Translation elongation factor EF1B/ribosomal protein S6)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf12422g01015.1	ref|XP_007036095.1|	*-*-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative, partial [Theobroma cacao] gb|EOY20596.1| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative, partial [Theobroma cacao]		
Niben101Scf06344g04010.1	sp|Q9SLN1|FPP7_ARATH	*-*-	Filament-like plant protein 7	IPR008587 (Filament-like plant protein)	
Niben101Scf19300g00004.1	AT2G37420.1	*-**	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf06238g01010.1	sp|Q08853|ATC_PLAFK	*-*-	Calcium-transporting ATPase	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf01411g01005.1	AT3G47700.1	***-	RINT-1 / TIP-1 family LENGTH=795	IPR007528 (RINT-1/TIP-20)	GO:0005783 (endoplasmic reticulum), GO:0048193 (Golgi vesicle transport)
Niben101Scf02450g03020.1	sp|P61093|SINA_DROER	****	E3 ubiquitin-protein ligase sina	IPR004162 (E3 ubiquitin-protein ligase SINA like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf01191g01007.1	sp|O15488|GLYG2_HUMAN	*-*-	Glycogenin-2	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf03045g01013.1	ref|XP_003591246.1|	--*-	Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf05855g03002.1	emb|CDY64762.1|	*-*-	BnaC06g42790D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf07109g05001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02041g04029.1	sp|A6QL88|SAC1_BOVIN	*-**	Phosphatidylinositide phosphatase SAC1	IPR002013 (SAC domain), IPR030069 (Phosphoinositide phosphatase SAC6/7/8)	GO:0042578 (phosphoric ester hydrolase activity), GO:0052866 (phosphatidylinositol phosphate phosphatase activity)
Niben101Scf00144g02007.1	sp|Q9SJF3|DCP1_ARATH	*-*-	mRNA-decapping enzyme-like protein	IPR010334 (Dcp1-like decapping), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf01534g02027.1	sp|Q9SE45|ANXD3_ARATH	***-	Annexin D3	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf05323g01018.1	sp|Q39242|TRXB2_ARATH	--*-	Thioredoxin reductase 2		
Niben101Scf00393g02008.1	sp|Q8DKR7|DNAJ_THEEB	--*-	Chaperone protein DnaJ	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf00898g00023.1	AT1G10370.1	***-	Glutathione S-transferase family protein LENGTH=227	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	
Niben101Scf02531g02013.1	gb|KEH36642.1|	***-	DUF1685 family protein [Medicago truncatula]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf02420g08014.1	AT5G51780.1	****	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=174	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03683g03014.1	sp|P78968|PPZ_SCHPO	***-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf30565g00001.1	gb|AIF76113.1|	*-*-	cytochrome c biogenesis B, partial (mitochondrion) [Halodule pinifolia]		
Niben101Scf02929g04007.1			Unknown protein		
Niben101Scf01107g00018.1	AT5G10330.1	****	histidinol phosphate aminotransferase 1 LENGTH=417	IPR005861 (Histidinol-phosphate aminotransferase family), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0000105 (histidine biosynthetic process), GO:0003824 (catalytic activity), GO:0004400 (histidinol-phosphate transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00854g11130.1	sp|P68540|COX1_AEGCO	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08275g01006.1			Unknown protein		
Niben101Scf05025g01004.1	gb|ADR51137.1|	****	self-incompatibility ribonuclease [Solanum peruvianum]	IPR001568 (Ribonuclease T2-like)	GO:0003723 (RNA binding), GO:0033897 (ribonuclease T2 activity)
Niben101Scf06848g08003.1	sp|O49399|PP321_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf23248g00007.1	sp|Q6DFB8|TTC37_XENLA	*-*-	Tetratricopeptide repeat protein 37	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf09321g00009.1	sp|Q39247|2ABB_ARATH	****	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	IPR000009 (Protein phosphatase 2A, regulatory subunit PR55), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0000159 (protein phosphatase type 2A complex), GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf01025g05006.1	emb|CDX78193.1|	***-	BnaA09g33880D [Brassica napus]		
Niben101Scf03932g02007.1	sp|Q6Q3H3|TPSGD_VITVI	*-**	(-)-germacrene D synthase	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf01369g03021.1			Unknown protein		
Niben101Scf07798g01002.1	AT3G14180.1	*-*-	sequence-specific DNA binding transcription factors LENGTH=443	IPR006578 (MADF domain)	
Niben101Scf00772g00003.1	AT3G02800.1	****	Tyrosine phosphatase family protein LENGTH=203	IPR004861 (Protein-tyrosine phosphatase, SIW14-like), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf06811g00004.1	gb|AAD25575.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf01374g08004.1	ref|XP_007024291.1|	*-*-	F9L1.16, putative isoform 5 [Theobroma cacao] gb|EOY26913.1| F9L1.16, putative isoform 5 [Theobroma cacao]		
Niben101Scf00428g02005.1	gb|KEH31798.1|	*-*-	S-adenosylmethionine-dependent methyltransferase, putative [Medicago truncatula]		
Niben101Scf09264g00014.1	sp|Q53LQ0|PDI11_ORYSJ	****	Protein disulfide isomerase-like 1-1	IPR005792 (Protein disulphide isomerase), IPR012336 (Thioredoxin-like fold)	GO:0005783 (endoplasmic reticulum), GO:0016853 (isomerase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf09172g00002.1	sp|O81498|U72E3_ARATH	*-*-	UDP-glycosyltransferase 72E3		
Niben101Scf03050g02004.1	AT1G35180.1	***-	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein LENGTH=231	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf05245g03004.1	AT3G05320.1	***-	O-fucosyltransferase family protein LENGTH=445	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf10732g01003.1	gb|ACZ52183.1|	***-	ribosomal protein L10 (mitochondrion) [Digitalis purpurea]		
Niben101Scf02077g00009.1	sp|Q8L539|5FCL_ARATH	*-*-	5-formyltetrahydrofolate cyclo-ligase, mitochondrial	IPR002698 (5-formyltetrahydrofolate cyclo-ligase), IPR024185 (5-formyltetrahydrofolate cyclo-ligase-like domain)	
Niben101Scf01460g04011.1	sp|P54086|TATC_SYNY3	***-	Sec-independent protein translocase protein TatC	IPR002033 (Sec-independent periplasmic protein translocase TatC)	GO:0016021 (integral component of membrane)
Niben101Scf02119g00016.1	sp|P10987|ACT1_DROME	***-	Actin-5C	IPR004000 (Actin family)	
Niben101Scf07247g04006.1	AT1G53040.1	***-	Protein of unknown function (DUF616) LENGTH=540	IPR006852 (Protein of unknown function DUF616)	
Niben101Scf01033g01004.1	sp|A6LXQ5|NUOA_CLOB8	--**	NADH-quinone oxidoreductase subunit A	IPR000440 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07608g04009.1	ref|XP_006381723.1|	*-*-	RNA-binding family protein [Populus trichocarpa] gb|ERP59520.1| RNA-binding family protein [Populus trichocarpa]		
Niben101Scf01804g00028.1			Unknown protein		
Niben101Scf02842g01015.1	sp|O49816|LEA1_CICAR	-**-	Late embryogenesis abundant protein 1		
Niben101Scf09088g00001.1	sp|O81062|SIP_ARATH	****	Signal peptide peptidase	IPR006639 (Presenilin/signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf02886g01002.1	sp|P52409|E13B_WHEAT	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00963g05016.1	sp|Q82WN0|TATB_NITEU	*-*-	Sec-independent protein translocase protein TatB		
Niben101Scf09623g00017.1	AT1G64770.3	***-	NDH-dependent cyclic electron flow 1 LENGTH=367	IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf01240g04014.1	gb|KEH20351.1|	*-*-	Sel1 repeat protein [Medicago truncatula]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00168g10008.1	AT5G67080.1	****	mitogen-activated protein kinase kinase kinase 19 LENGTH=344	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08652g00013.1	AT4G24120.1	*-*-	YELLOW STRIPE like 1 LENGTH=673	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf01782g07018.1	sp|Q5BPJ0|TBL11_ARATH	*-*-	Protein trichome birefringence-like 11	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf02466g03005.1	sp|Q5BKT4|AG10A_HUMAN	*-*-	Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase	IPR016900 (Glucosyltransferase Alg10)	GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03546g01023.1	sp|Q9BTZ2|DHRS4_HUMAN	****	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02389g00011.1	AT3G44850.1	*-*-	Protein kinase superfamily protein LENGTH=534	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05188g02015.1	sp|Q9FRI5|PPR57_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06101g00021.1	AT3G16060.1	****	ATP binding microtubule motor family protein LENGTH=684	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf04328g00050.1	sp|B1NWE6|PSBC_MANES	****	Photosystem II CP43 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf04664g04014.1	ref|XP_002512970.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF49473.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03592g01024.1	emb|CDY54374.1|	*-*-	BnaAnng13050D [Brassica napus]		
Niben101Scf02698g01003.1	sp|Q13188|STK3_HUMAN	****	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03031g04001.1	sp|Q5ZLM0|CDC73_CHICK	*-*-	Parafibromin	IPR007852 (RNA polymerase II accessory factor, Cdc73)	
Niben101Scf14344g00004.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01826g02004.1	sp|Q921I2|KLDC4_MOUSE	***-	Kelch domain-containing protein 4	IPR015915 (Kelch-type beta propeller), IPR025183 (Domain of unknown function DUF4110)	GO:0005515 (protein binding)
Niben101Scf03417g01002.1			Unknown protein		
Niben101Scf34081g00005.1	sp|Q9ZPV9|SY112_ARATH	***-	Syntaxin-112	IPR010989 (t-SNARE)	GO:0005515 (protein binding), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf04892g00013.1	AT3G17860.1	*-*-	jasmonate-zim-domain protein 3 LENGTH=352	IPR010399 (Tify), IPR018467 (CO/COL/TOC1, conserved site)	
Niben101Scf05961g01012.1	sp|Q6DCY9|HAUS3_XENLA	****	HAUS augmin-like complex subunit 3	IPR026206 (HAUS augmin-like complex subunit 3)	GO:0051225 (spindle assembly), GO:0070652 (HAUS complex)
Niben101Scf02160g06063.1	sp|P35075|CYB_COTJA	***-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal), IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf00595g01002.1	sp|Q9SMU4|U496N_ARATH	***-	UPF0496 protein	IPR007749 (Protein of unknown function DUF677)	
Niben101Scf03880g00003.1	sp|Q55EI6|ATX10_DICDI	*-*-	Ataxin-10 homolog	IPR016024 (Armadillo-type fold), IPR019156 (Ataxin-10 domain)	GO:0005488 (binding)
Niben101Scf00058g06002.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf04217g02015.1	sp|Q8VYC8|RIN2_ARATH	***-	E3 ubiquitin protein ligase RIN2	IPR003892 (Ubiquitin system component Cue), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07345g00016.1	sp|Q2HXL0|RBOHC_SOLTU	*-**	Respiratory burst oxidase homolog protein C	IPR011992 (EF-hand domain pair)	GO:0004601 (peroxidase activity), GO:0005509 (calcium ion binding), GO:0050664 (oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf03766g01010.1	sp|B3NUB6|ENY2_DROER	*-**	Enhancer of yellow 2 transcription factor	IPR018783 (Transcription factor, enhancer of yellow 2)	GO:0000124 (SAGA complex), GO:0003713 (transcription coactivator activity), GO:0005643 (nuclear pore), GO:0006406 (mRNA export from nucleus), GO:0045893 (positive regulation of transcription, DNA-templated)
Niben101Scf07585g00014.1			Unknown protein		
Niben101Scf04945g00007.1	sp|Q8S948|SPS1_ARATH	***-	Solanesyl diphosphate synthase 1	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process), GO:0015979 (photosynthesis), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf01722g02001.1			Unknown protein		
Niben101Scf01372g06021.1	gb|AAT39304.2|	--*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf01061g01029.1	AT5G17540.1	****	HXXXD-type acyl-transferase family protein LENGTH=461	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03506g03003.1	emb|CDY70591.1|	*-*-	BnaCnng68960D [Brassica napus]		
Niben101Scf00508g06005.1	sp|Q0WSY2|FPP4_ARATH	***-	Filament-like plant protein 4	IPR008587 (Filament-like plant protein)	
Niben101Scf01917g05005.1	sp|A6NCQ9|RN222_HUMAN	--*-	RING finger protein 222	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027370 (RING-type zinc-finger, LisH dimerisation motif)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04817g00017.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf05294g00039.1	AT3G18380.2	****	sequence-specific DNA binding transcription factors;sequence-specific DNA binding LENGTH=349	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf25231g00005.1	sp|Q681K7|GEX1_ARATH	***-	Protein GAMETE EXPRESSED 1		
Niben101Scf10840g01006.1	gb|KEH21158.1|	***-	membrane-associated kinase regulator, putative [Medicago truncatula]		
Niben101Scf07466g06002.1	AT1G16860.1	***-	Ubiquitin-specific protease family C19-related protein LENGTH=474		
Niben101Scf00892g00014.1			Unknown protein		
Niben101Scf03280g01010.1	sp|Q6IV77|TAZ_MACMU	*-*-	Tafazzin	IPR000872 (Tafazzin)	GO:0006644 (phospholipid metabolic process), GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf31210g00001.1	sp|Q6EP49|MAD27_ORYSJ	****	MADS-box transcription factor 27	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08137g01031.1	sp|Q9LHP4|RCH2_ARATH	--*-	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04040g08009.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05078g04001.1	AT1G24300.1	*-*-	GYF domain-containing protein LENGTH=1495	IPR003169 (GYF)	GO:0005515 (protein binding)
Niben101Scf03006g06007.1	sp|Q8K2Z4|CND1_MOUSE	*-*-	Condensin complex subunit 1	IPR016024 (Armadillo-type fold), IPR024324 (Condensin complex, subunit 1, N-terminal), IPR026003 (HEAT repeat associated with sister chromatid cohesion protein), IPR026971 (Condensin subunit 1/Condensin-2 complex subunit D3)	GO:0005488 (binding), GO:0005634 (nucleus), GO:0007067 (mitotic nuclear division), GO:0007076 (mitotic chromosome condensation), GO:0030261 (chromosome condensation)
Niben101Scf16437g00001.1			Unknown protein		
Niben101Scf03030g00005.1	AT5G39530.1	***-	Protein of unknown function (DUF1997) LENGTH=239	IPR018971 (Protein of unknown function DUF1997)	
Niben101Scf10763g00016.1			Unknown protein		
Niben101Scf03070g05001.1	sp|Q2MIC5|YCF2_SOLBU	*-*-	Protein Ycf2		
Niben101Scf14299g00002.1	AT1G14140.1	***-	Mitochondrial substrate carrier family protein LENGTH=305	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf05301g01007.1	sp|Q4KLT6|FL2D_XENLA	--*-	Pre-mRNA-splicing regulator WTAP		
Niben101Scf00185g02012.1	sp|P49692|RL7A1_ARATH	*-*-	60S ribosomal protein L7a-1	IPR001921 (Ribosomal protein L7A/L8)	
Niben101Scf16608g00009.1	sp|Q9TIS6|MATK_CASLN	***-	Maturase K	IPR024942 (Maturase MatK, N-terminal domain)	
Niben101Scf02922g02027.1	AT5G15430.1	*-**	Plant calmodulin-binding protein-related LENGTH=478	IPR012417 (Calmodulin-binding domain, plant)	GO:0005516 (calmodulin binding)
Niben101Scf09659g01003.1	sp|Q8RX01|Y3567_ARATH	***-	BTB/POZ domain-containing protein		
Niben101Scf14022g03001.1			Unknown protein		
Niben101Scf02164g06014.1	sp|Q2KII6|NGDN_BOVIN	*-*-	Neuroguidin	IPR007146 (Sas10/Utp3/C1D)	
Niben101Scf03419g05006.1	AT1G58470.1	****	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02610g01002.1	gb|ABW81176.1|	*-*-	non-LTR reverse transcriptase [Arabidopsis cebennensis]		
Niben101Scf10637g00003.1	AT3G56880.1	***-	VQ motif-containing protein LENGTH=245	IPR008889 (VQ)	
Niben101Scf04563g02002.1	gb|KEH20674.1|	*-*-	MYB-like transcription factor family protein [Medicago truncatula]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02502g18001.1			Unknown protein		
Niben101Scf07608g01009.1	sp|Q2RY28|CH601_RHORT	--*-	60 kDa chaperonin 1	IPR027413 (GroEL-like equatorial domain)	
Niben101Scf01005g00001.1	sp|O23470|GDL64_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01293g05009.1	gb|AGL39662.1|	--*-	NAC transcription factor 006 [Jatropha curcas]		
Niben101Scf10476g02009.1	AT1G44750.1	***-	purine permease 11 LENGTH=379	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf00996g02008.1	AT3G58830.1	***-	haloacid dehalogenase (HAD) superfamily protein LENGTH=343	IPR010021 (HAD-superfamily phosphatase, YqeG-like), IPR023214 (HAD-like domain)	
Niben101Scf00620g02005.1	sp|P41113|ACT3_PODCA	*-*-	Actin-3	IPR004000 (Actin family)	
Niben101Scf02381g02004.1	sp|Q9M886|LBD41_ARATH	***-	LOB domain-containing protein 41	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf03237g00002.1	sp|Q8W1Y0|SSC14_ARATH	*-*-	Sister chromatid cohesion 1 protein 4	IPR006910 (Rad21/Rec8-like protein, N-terminal)	GO:0005515 (protein binding)
Niben101Scf08006g01028.1	sp|Q9SRT2|BH062_ARATH	***-	Transcription factor bHLH62	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03506g03002.1	sp|Q6ZSG1|RN165_HUMAN	--*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00712g06009.1	ref|NP_001148046.1|	****	LOC100281655 [Zea mays] gb|ACG29576.1| metal ion binding protein [Zea mays]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf02740g01002.1	sp|P56533|BADH_GADMC	*-**	Betaine aldehyde dehydrogenase	IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00669g01008.1	AT3G53520.4	***-	UDP-glucuronic acid decarboxylase 1 LENGTH=458	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf01022g03015.1	ref|NP_564913.1|	--*-	PAS domain-containing protein tyr tyrosine kinase [Arabidopsis thaliana]		
Niben101Scf04827g02004.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf00854g04113.1			Unknown protein		
Niben101Scf01380g03004.1	sp|Q2V4F9|SPXM1_ARATH	*-*-	SPX domain-containing membrane protein	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf01013g02015.1	gb|ABD28627.2|	--**	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf05183g09017.1			Unknown protein		
Niben101Scf10650g00012.1	sp|P40973|PLY_LILLO	*-**	Pectate lyase	IPR007524 (Pectate lyase, N-terminal), IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	GO:0030570 (pectate lyase activity)
Niben101Scf02338g00015.1			Unknown protein		
Niben101Scf00595g05001.1	sp|Q9LKF9|CPSF2_ARATH	****	Cleavage and polyadenylation specificity factor subunit 2	IPR001279 (Beta-lactamase-like), IPR011108 (RNA-metabolising metallo-beta-lactamase), IPR022712 (Beta-Casp domain), IPR025069 (Cleavage and polyadenylation specificity factor 2, C-terminal), IPR027075 (Cleavage and polyadenylation specificity factor subunit 2)	GO:0005847 (mRNA cleavage and polyadenylation specificity factor complex), GO:0006378 (mRNA polyadenylation), GO:0006379 (mRNA cleavage)
Niben101Scf03203g06001.1	ref|WP_015112140.1|	***-	pentapeptide repeat-containing protein [N [Nostoc sp. PCC 7107]	IPR001646 (Pentapeptide repeat)	
Niben101Scf03351g02004.1	sp|Q5XIH0|MAF1_RAT	****	Repressor of RNA polymerase III transcription MAF1 homolog	IPR015257 (Repressor of RNA polymerase III transcription  Maf1)	GO:0016480 (negative regulation of transcription from RNA polymerase III promoter)
Niben101Scf04448g01005.1	AT5G13810.1	*-*-	Glutaredoxin family protein LENGTH=274	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf09360g00015.1	sp|Q9SJ73|PP148_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01517g04011.1	AT1G30040.1	***-	gibberellin 2-oxidase LENGTH=341	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf04140g00012.1	AT1G68170.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=356	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf02160g06064.1	sp|Q2GL46|RS14_ANAPZ	-**-	30S ribosomal protein S14	IPR001209 (Ribosomal protein S14)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08516g00011.1	ref|XP_003604291.1|	***-	F-box/LRR-repeat protein [Medicago truncatula]	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf01641g00004.1	AT4G33490.2	***-	Eukaryotic aspartyl protease family protein LENGTH=425	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01142g05003.1			Unknown protein		
Niben101Ctg14008g00002.1	AT5G14860.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=492	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf09924g01005.1	sp|Q9LUL5|PP229_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03039g03012.1	AT3G21190.1	***-	O-fucosyltransferase family protein LENGTH=422	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf38373g00003.1	AT5G21430.1	*-*-	Chaperone DnaJ-domain superfamily protein LENGTH=218	IPR001623 (DnaJ domain)	
Niben101Scf02459g04010.1	AT5G25820.1	*-*-	Exostosin family protein LENGTH=654	IPR004263 (Exostosin-like)	
Niben101Scf05772g00010.1	AT5G55600.1	***-	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein LENGTH=663	IPR001025 (Bromo adjacent homology (BAH) domain), IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	GO:0003682 (chromatin binding)
Niben101Scf08804g03050.1	AT1G60170.1	*-*-	pre-mRNA processing ribonucleoprotein binding region-containing protein LENGTH=485		
Niben101Scf01125g03021.1			Unknown protein		
Niben101Scf03546g01022.1	ref|XP_002874791.1|	****	calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata] gb|EFH51050.1| calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata]	IPR000261 (EPS15 homology (EH)), IPR011992 (EF-hand domain pair), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005525 (GTP binding)
Niben101Scf03482g00003.1	AT1G26850.1	*-*-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=616	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf03804g05012.1	sp|Q4KMJ1|CHAC2_DANRE	***-	Cation transport regulator-like protein 2	IPR006840 (ChaC-like protein), IPR013024 (Butirosin biosynthesis, BtrG-like)	
Niben101Scf00223g00001.1	emb|CDY04581.1|	***-	BnaA07g14070D [Brassica napus]	IPR012862 (Protein of unknown function DUF1635)	
Niben101Scf08566g03011.1	ref|XP_002527458.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF34950.1| conserved hypothetical protein [Ricinus communis]	IPR008502 (Prolamin-like domain)	
Niben101Scf03279g03018.1	AT1G10910.1	*-*-	Pentatricopeptide repeat (PPR) superfamily protein LENGTH=664		
Niben101Scf00904g00008.1			Unknown protein		
Niben101Scf05689g02012.1	sp|Q5FGW5|NUOH_EHRRG	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf00069g04007.1	ref|XP_007047677.1|	*-*-	SPT2 chromatin protein, putative isoform 2 [Theobroma cacao] gb|EOX91834.1| SPT2 chromatin protein, putative isoform 2 [Theobroma cacao]	IPR013256 (Chromatin SPT2)	
Niben101Scf19932g00001.1	sp|Q6ZSG1|RN165_HUMAN	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00219g04008.1	sp|Q9BTT6|LRRC1_HUMAN	*-*-	Leucine-rich repeat-containing protein 1	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf00345g01006.1			Unknown protein		
Niben101Scf05791g00016.1	AT3G50240.1	****	ATP binding microtubule motor family protein LENGTH=1051	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf02373g03005.1	sp|Q5R1W5|SRSF2_PANTR	*-*-	Serine/arginine-rich splicing factor 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Ctg06726g00003.1	sp|Q9LUE2|TPS18_ARATH	*-**	Terpenoid synthase 18	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf07969g00010.1	sp|Q9LZM4|WAKLQ_ARATH	--*-	Wall-associated receptor kinase-like 20	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf02917g00004.1	sp|P45482|FTSZ_NOSS1	***-	Cell division protein FtsZ	IPR000158 (Cell division protein FtsZ)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005737 (cytoplasm), GO:0006184 (GTP catabolic process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf06347g04013.1	sp|Q9LJQ5|RTNLI_ARATH	*-*-	Reticulon-like protein B9	IPR003388 (Reticulon)	
Niben101Scf14768g00003.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf01353g03001.1	ref|XP_002520077.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF42401.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00124g00011.1	sp|Q8VI02|PP4R1_RAT	*-*-	Serine/threonine-protein phosphatase 4 regulatory subunit 1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00730g00029.1	gb|KEH42283.1|	***-	PWWP domain protein [Medicago truncatula]		
Niben101Scf04370g00026.1	gb|AEB39994.1|	*-**	cytochrome c biogenesis factor N [Funaria hygrometrica]	IPR003567 (Cytochrome c-type biogenesis protein)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf18384g00003.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf10970g00006.1	ref|XP_003588265.1|	--*-	NADH-ubiquinone oxidoreductase chain [Medicago truncatula] gb|KEH16847.1| NADH-quinone oxidoreductase protein [Medicago truncatula]		
Niben101Scf07045g00001.1	sp|Q0IJ20|RN145_XENTR	*-*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf15437g02005.1	sp|Q8H125|SCL5_ARATH	*-*-	Scarecrow-like protein 5	IPR005202 (Transcription factor GRAS)	
Niben101Scf03189g00001.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09808g02001.1	sp|Q6AWW5|Y5262_ARATH	*-*-	Ankyrin repeat-containing protein	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf01382g01008.1	sp|P41099|RLA2_PARAR	*-*-	60S acidic ribosomal protein P2	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf02660g04001.1	AT4G14740.1	*-*-	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region LENGTH=475	IPR008546 (Domain of unknown function DUF828), IPR013666 (Pleckstrin-like, plant)	
Niben101Scf00180g06007.1	sp|Q54X16|GID8_DICDI	***-	Glucose-induced degradation protein 8 homolog	IPR013144 (CRA domain), IPR024964 (CTLH/CRA C-terminal to LisH motif domain)	
Niben101Scf18418g00003.1	gb|AES88942.2|	*-*-	DUF1680 domain protein [Medicago truncatula]	IPR012878 (Protein of unknown function DUF1680)	GO:0003824 (catalytic activity)
Niben101Scf03385g05001.1	sp|Q8L7W8|FUCO2_ARATH	*-**	Alpha-L-fucosidase 2	IPR016518 (Alpha-L-fucosidase), IPR027414 (Glycosyl hydrolase family, N-terminal domain)	GO:0003824 (catalytic activity), GO:0004560 (alpha-L-fucosidase activity)
Niben101Scf01463g08011.1	AT5G62570.2	*-*-	Calmodulin binding protein-like LENGTH=494	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf08137g03013.1	ref|XP_002521307.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF41081.1| conserved hypothetical protein [Ricinus communis]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf00343g09001.1	gb|ABD32321.2|	*-**	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf03210g00012.1	sp|A7RP64|PNO1_NEMVE	****	RNA-binding protein pno1	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf10835g00001.1	sp|Q9FJZ3|MAN7_ARATH	***-	Mannan endo-1,4-beta-mannosidase 7	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf30320g00009.1	sp|A2Z7B3|GME1_ORYSI	***-	GDP-mannose 3,5-epimerase 1	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf03644g00003.1	AT4G02050.1	****	sugar transporter protein 7 LENGTH=513	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02290g01001.1	sp|A6TRI3|SPEE_ALKMQ	***-	Polyamine aminopropyl transferase	IPR001045 (Spermidine/spermine synthases family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase), IPR030373 (Polyamine biosynthesis domain, conserved site)	GO:0003824 (catalytic activity)
Niben101Scf02369g00003.1	sp|Q9SIB4|WOX3_ARATH	*-*-	WUSCHEL-related homeobox 3	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf02085g10001.1	sp|O80437|GPAT6_ARATH	***-	Glycerol-3-phosphate 2-O-acyltransferase 6	IPR002123 (Phospholipid/glycerol acyltransferase), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf00402g05010.1	sp|A7QEU4|PER5_VITVI	****	Peroxidase 5	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06171g02019.1	sp|E1U332|ALL12_OLEEU	***-	Isoflavone reductase-like protein	IPR016040 (NAD(P)-binding domain)	
Niben101Scf01813g00013.1	AT3G26310.1	***-	cytochrome P450, family 71, subfamily B, polypeptide 35 LENGTH=500	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01734g01021.1	AT5G05950.1	***-	maternal effect embryo arrest 60 LENGTH=175		
Niben101Scf01738g04009.1	AT4G11400.1	*-*-	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=573	IPR000949 (ELM2 domain)	
Niben101Scf07030g00017.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07277g00011.1	AT2G40960.1	*-**	Single-stranded nucleic acid binding R3H protein LENGTH=351	IPR001374 (Single-stranded nucleic acid binding R3H), IPR024771 (SUZ domain)	GO:0003676 (nucleic acid binding)
Niben101Scf02139g07001.1	sp|Q2LVL0|MSBA_SYNAS	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf07631g00003.1	sp|O80713|SDR3A_ARATH	****	Short-chain dehydrogenase reductase 3a	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf07457g00004.1	sp|Q647I9|NALP5_BOVIN	*-*-	NACHT, LRR and PYD domains-containing protein 5	IPR003590 (Leucine-rich repeat, ribonuclease inhibitor subtype)	
Niben101Scf05411g02006.1	sp|Q75JG8|DPH5_DICDI	****	Diphthine synthase	IPR000878 (Tetrapyrrole methylase), IPR004551 (Diphthine synthase)	GO:0004164 (diphthine synthase activity), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity), GO:0017183 (peptidyl-diphthamide biosynthetic process from peptidyl-histidine)
Niben101Scf09764g00001.1			Unknown protein		
Niben101Scf01671g04002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg04413g00001.1	sp|O81832|Y4729_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain)	
Niben101Scf14830g00003.1	AT3G12810.1	*-*-	SNF2 domain-containing protein / helicase domain-containing protein LENGTH=2055	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf07589g01015.1			Unknown protein	IPR025886 (Phloem protein 2-like)	
Niben101Scf03080g04007.1			Unknown protein		
Niben101Scf08533g02018.1	emb|CDY11048.1|	***-	BnaA03g47070D [Brassica napus]		
Niben101Scf01063g10010.1	sp|Q9LS46|ALMT9_ARATH	****	Aluminum-activated malate transporter 9	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf00213g02010.1			Unknown protein		
Niben101Scf00318g03008.1	gb|ABA94311.1|	*-*-	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]		
Niben101Scf00177g09008.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01124g04009.1	sp|Q8L5T5|LBD15_ARATH	***-	LOB domain-containing protein 15	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf06123g04007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001368 (TNFR/NGFR cysteine-rich region), IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05440g05004.1	sp|Q2HJ46|RNF8_BOVIN	--*-	E3 ubiquitin-protein ligase RNF8	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02290g02008.1	sp|Q4V7B8|RNF44_RAT	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04418g07005.1			Unknown protein		
Niben101Scf03693g04007.1	sp|P29054|TF2B_XENLA	****	Transcription initiation factor IIB	IPR000812 (Transcription factor TFIIB)	GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0017025 (TBP-class protein binding)
Niben101Scf09044g01012.1	sp|P81370|TLP_ACTDE	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf03413g00006.1	AT2G36290.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=364	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03515g00089.1			Unknown protein		
Niben101Scf05948g02025.1	AT1G29800.1	***-	RING/FYVE/PHD-type zinc finger family protein LENGTH=510	IPR007461 (Ysc84 actin-binding domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0046872 (metal ion binding)
Niben101Scf06926g04001.1	AT5G05690.1	***-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09513g00012.1	sp|Q54EH1|EPN_DICDI	*-*-	Epsin	IPR008942 (ENTH/VHS)	
Niben101Scf06077g00013.1	sp|C1F876|MUTL_ACIC5	*-**	DNA mismatch repair protein MutL	IPR002099 (DNA mismatch repair protein family)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0007131 (reciprocal meiotic recombination), GO:0030983 (mismatched DNA binding), GO:0032300 (mismatch repair complex)
Niben101Scf00574g02009.1	gb|KEH30805.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00168g03007.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR025875 (Leucine rich repeat 4)	
Niben101Scf09575g01011.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf07826g04012.1	sp|Q9LUD4|R18A3_ARATH	***-	60S ribosomal protein L18a-3	IPR023573 (Ribosomal protein L18a/LX), IPR028877 (50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01795g13007.1	sp|Q9SKH2|Y2369_ARATH	***-	BTB/POZ domain-containing protein		
Niben101Scf03915g01008.1	sp|P0C5A3|DPNP_ORYSA	****	3'(2'),5'-bisphosphate nucleotidase	IPR000760 (Inositol monophosphatase)	GO:0006790 (sulfur compound metabolic process), GO:0008441 (3'(2'),5'-bisphosphate nucleotidase activity), GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf08263g01001.1			Unknown protein		
Niben101Scf06677g00006.1	ref|XP_007040807.1|	***-	PAM68, chloroplastic, putative isoform 3 [Theobroma cacao] ref|XP_007040808.1| PAM68, chloroplastic, putative isoform 3 [Theobroma cacao] gb|EOY25308.1| PAM68, chloroplastic, putative isoform 3 [Theobroma cacao] gb|EOY25309.1| PAM68, chloroplastic, putative isoform 3 [Theobroma cacao]	IPR021855 (Protein of unknown function DUF3464)	
Niben101Scf01566g00004.1			Unknown protein		
Niben101Scf07823g00014.1	gb|AGW82787.1|	***-	Ycf1, partial (chloroplast) [Lepechinia radula]		
Niben101Scf08700g00007.1	sp|O15155|BET1_HUMAN	***-	BET1 homolog	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf37365g00008.1	ref|XP_007041356.1|	-***	Cytochrome P450 82C4, putative isoform 2 [Theobroma cacao] gb|EOX97187.1| Cytochrome P450 82C4, putative isoform 2 [Theobroma cacao]	IPR012595 (PetM of cytochrome b6/f complex subunit 7)	GO:0009512 (cytochrome b6f complex)
Niben101Scf02920g00004.1	emb|CAE01923.2|	*-*-	OSJNBb0078D11.6 [Oryza sativa Japonica Group]	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184)	
Niben101Scf04003g09006.1	sp|Q9FH99|FB302_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf06280g00009.1	sp|Q9Y2G4|ANKR6_HUMAN	--*-	Ankyrin repeat domain-containing protein 6	IPR016197 (Chromo domain-like), IPR020683 (Ankyrin repeat-containing domain), IPR030300 (Signal recognition particle 43 kDa protein)	GO:0005515 (protein binding), GO:0009416 (response to light stimulus), GO:0009507 (chloroplast), GO:0045038 (protein import into chloroplast thylakoid membrane), GO:0080085 (signal recognition particle, chloroplast targeting)
Niben101Scf03138g01002.1	AT5G49690.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02426g02031.1	ref|XP_002518817.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF43742.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01177g05001.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141		
Niben101Ctg01781g00001.1	sp|Q6YSJ5|AGO16_ORYSJ	*-*-	Protein argonaute 16	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf00225g06013.1	gb|AFW90605.1|	***-	Avr9/Cf-9 rapidly elicited protein 65 [Solanum tuberosum]		
Niben101Scf00765g02005.1	sp|Q9LF66|Y5758_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf05103g01005.1	sp|F4HXV6|NU155_ARATH	****	Nuclear pore complex protein NUP155	IPR004870 (Nucleoporin, Nup155-like)	GO:0005643 (nuclear pore), GO:0006913 (nucleocytoplasmic transport), GO:0017056 (structural constituent of nuclear pore)
Niben101Scf03169g06003.1	sp|Q9SGP6|GRXC9_ARATH	***-	Glutaredoxin-C9	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02011g10021.1			Unknown protein		
Niben101Scf02072g01013.1	sp|Q9C9H7|RLP12_ARATH	***-	Receptor-like protein 12	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf06560g01003.1	AT3G02300.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=471	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf01897g07001.1			Unknown protein		
Niben101Scf00401g01014.1	sp|O22927|GDL42_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04889g00023.1	AT1G55200.1	*-*-	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain LENGTH=676	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	
Niben101Scf09387g05008.1	AT1G12250.1	*-*-	Pentapeptide repeat-containing protein LENGTH=280	IPR001646 (Pentapeptide repeat)	
Niben101Scf04223g01040.1			Unknown protein		
Niben101Scf13394g00013.1	sp|A0PXM8|FTSH_CLONN	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01545g00010.1	AT5G11330.1	****	FAD/NAD(P)-binding oxidoreductase family protein LENGTH=408	IPR003042 (Aromatic-ring hydroxylase-like)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01784g06003.1	sp|P34422|DPF6_CAEEL	*-**	Dipeptidyl peptidase family member 6	IPR011042 (Six-bladed beta-propeller, TolB-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf01249g05003.1	sp|B9MS26|PYRDB_CALBD	****	Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit	IPR005720 (Dihydroorotate dehydrogenase domain), IPR012135 (Dihydroorotate dehydrogenase, class 1/ 2), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004152 (dihydroorotate dehydrogenase activity), GO:0005737 (cytoplasm), GO:0006222 (UMP biosynthetic process), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02798g00039.1	sp|Q0C1D1|NUON_HYPNA	*-*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf12289g01030.1	sp|Q9SD34|C3H44_ARATH	*-*-	Zinc finger CCCH domain-containing protein 44	IPR003121 (SWIB/MDM2 domain), IPR004343 (Plus-3)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006352 (DNA-templated transcription, initiation), GO:0016570 (histone modification)
Niben101Scf10132g01028.1	sp|A6ZP47|DED1_YEAS7	*-**	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf00779g00008.1	emb|CDY65054.1|	*-*-	BnaC09g53260D [Brassica napus]		
Niben101Scf00415g03010.1	sp|P0DI27|CSPL6_PTEAA	--*-	CASP-like protein 5A1		
Niben101Scf02232g04009.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10635g02002.1	AT1G24620.1	****	EF hand calcium-binding protein family LENGTH=186	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf04686g02018.1	ref|NP_001151832.1|	--*-	protein app1 precursor [Zea mays] gb|ACG44498.1| protein app1 [Zea mays]		
Niben101Scf08222g03007.1	sp|O24409|IAA19_ARATH	***-	Auxin-responsive protein IAA19	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf18540g00014.1	AT5G42670.1	*-*-	Agenet domain-containing protein LENGTH=294	IPR014002 (Tudor-like, plant)	
Niben101Scf02469g01018.1	sp|A2WT95|PLA1_ORYSI	***-	Phospholipase A1-II 1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf01065g08001.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02429g07036.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03091g00007.1	ref|XP_007051163.1|	****	Zinc knuckle family protein isoform 3 [Theobroma cacao] gb|EOX95320.1| Zinc knuckle family protein isoform 3 [Theobroma cacao]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf00117g02006.1	sp|Q84LH3|WEX_ARATH	--**	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf07086g00001.1	gb|AAW30286.1|	*-**	cytochrome c biogenesis ccmF [Amborella trichopoda]	IPR003569 (Cytochrome c-type biogenesis protein CcbS)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf00586g00018.1	sp|D8QNI1|CSPLH_SELML	***-	CASP-like protein 5A1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf07442g00008.1	sp|Q7NZU6|MSBA_CHRVO	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf03226g01002.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf06974g00003.1	emb|CDY28677.1|	***-	BnaCnng05630D [Brassica napus]		
Niben101Scf03860g01008.1			Unknown protein		
Niben101Scf04187g00037.1	AT2G04030.1	***-	Chaperone protein htpG family protein LENGTH=780	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf03702g04024.1	sp|O49436|PP327_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01534g04006.1	sp|Q14692|BMS1_HUMAN	*-**	Ribosome biogenesis protein BMS1 homolog	IPR000795 (Elongation factor, GTP-binding domain), IPR007034 (Ribosome biogenesis protein BMS1/TSR1, C-terminal), IPR012948 (AARP2CN), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005634 (nucleus), GO:0042254 (ribosome biogenesis)
Niben101Scf03676g03005.1	sp|P93844|PLDA2_ORYSJ	*-*-	Phospholipase D alpha 2	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	
Niben101Scf00883g06009.1			Unknown protein	IPR001936 (Ras GTPase-activating protein)	GO:0032318 (regulation of Ras GTPase activity)
Niben101Scf03924g01001.1	gb|AES86323.2|	*-*-	aldose 1-epimerase family protein [Medicago truncatula]	IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf02510g00001.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00568g04028.1	sp|Q7FNS8|PSAI_ATRBE	--*-	Photosystem I reaction center subunit VIII		
Niben101Scf00371g03012.1	sp|Q9JJK2|LANC2_MOUSE	--*-	LanC-like protein 2	IPR007822 (Lanthionine synthetase C-like)	
Niben101Scf00369g01002.1	sp|Q640U0|ACBD5_XENTR	*-**	Acyl-CoA-binding domain-containing protein 5	IPR014352 (FERM/acyl-CoA-binding protein, 3-helical bundle), IPR015915 (Kelch-type beta propeller), IPR015916 (Galactose oxidase, beta-propeller)	GO:0000062 (fatty-acyl-CoA binding), GO:0005515 (protein binding)
Niben101Scf01750g01003.1	sp|Q6NMR8|FAF3_ARATH	*-*-	Protein FANTASTIC FOUR 3	IPR021410 (The fantastic four family)	
Niben101Scf00663g02002.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf04675g04004.1	AT1G55340.1	*-*-	Protein of unknown function (DUF1639) LENGTH=205	IPR012438 (Protein of unknown function DUF1639)	
Niben101Scf00369g17002.1	sp|Q86KL4|MCTS1_DICDI	***-	Malignant T-cell-amplified sequence 1 homolog	IPR015947 (PUA-like domain), IPR016437 (Translation-associated RNA-binding, predicted)	GO:0003723 (RNA binding)
Niben101Scf00753g02005.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01462g02024.1	AT2G33845.1	***-	Nucleic acid-binding, OB-fold-like protein LENGTH=182	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf04518g00013.1	ref|XP_002510645.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52832.1| conserved hypothetical protein [Ricinus communis]	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf05678g01002.1	gb|ABB69784.1|	****	beta-glucan-binding protein 4 [Medicago truncatula]	IPR005200 (Endo-1,3(4)-beta-glucanase)	GO:0016998 (cell wall macromolecule catabolic process), GO:0052861 (glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group), GO:0052862 (glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group)
Niben101Scf04663g02005.1	sp|O35130|NEP1_MOUSE	****	Ribosomal RNA small subunit methyltransferase NEP1	IPR005304 (Ribosomal biogenesis, methyltransferase, EMG1/NEP1), IPR029028 (Alpha/beta knot methyltransferases)	GO:0008168 (methyltransferase activity)
Niben101Scf10810g01018.1	AT5G20740.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=205	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf04790g01006.1	sp|A2XDY1|MADS1_ORYSI	****	MADS-box transcription factor 1	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05413g05003.1	sp|Q8GXT3|BH123_ARATH	*-*-	Transcription factor bHLH123	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf07395g00028.1	sp|Q9LV10|PTR53_ARATH	***-	Protein NRT1/ PTR FAMILY 2.11	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf09878g01007.1	AT5G57960.1	****	GTP-binding protein, HflX LENGTH=540	IPR016496 (GTPase HflX), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf01463g04005.1	sp|Q08554|DSC1_HUMAN	--*-	Desmocollin-1		
Niben101Scf10688g02001.1	sp|Q9SK27|ENL1_ARATH	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf04936g00001.1			Unknown protein		
Niben101Ctg13582g00001.1	sp|O24160|TGA21_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02328g00010.1	sp|B7LQ82|YDIU_ESCF3	***-	UPF0061 protein YdiU	IPR003846 (Uncharacterised protein family UPF0061)	
Niben101Scf01269g13033.1	gb|AIE42546.1|	*-*-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf04583g00008.1	sp|Q14498|RBM39_HUMAN	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02223g05001.1	gb|AAB24078.1|	--**	lipid body membrane protein [Daucus carota]	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf04607g07006.1	sp|Q564G7|GMGT1_CYATE	***-	Galactomannan galactosyltransferase 1	IPR008630 (Galactosyl transferase)	GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00367g10003.1	sp|B7FKW7|CYNS_MEDTR	****	Cyanate hydratase	IPR008076 (Cyanate hydratase)	GO:0003677 (DNA binding), GO:0008824 (cyanate hydratase activity), GO:0009439 (cyanate metabolic process)
Niben101Scf03913g00009.1	sp|Q96CT7|CC124_HUMAN	*-*-	Coiled-coil domain-containing protein 124	IPR010422 (Protein of unknown function DUF1014)	
Niben101Scf09387g03012.1	sp|P49042|VPE_RICCO	***-	Vacuolar-processing enzyme	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf07451g01001.1	sp|P22852|TBB_POLAG	***-	Tubulin beta chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf02892g01016.1	sp|C3NF41|ARGB_SULIN	--*-	Acetylglutamate/acetylaminoadipate kinase		
Niben101Scf06671g01001.1	emb|CDY38196.1|	***-	BnaA09g11930D [Brassica napus]		
Niben101Scf07327g02004.1	sp|Q9T0C7|FB231_ARATH	--*-	F-box protein		
Niben101Scf04126g05025.1	sp|Q9M7K4|POT5_ARATH	****	Potassium transporter 5	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf03479g02008.1	AT3G25130.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). LENGTH=406		
Niben101Scf01611g03015.1	AT5G64420.1	*-**	DNA polymerase V family LENGTH=1306	IPR007015 (DNA polymerase V)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf05938g01026.1	emb|CDY08660.1|	*-*-	BnaC04g19690D [Brassica napus]	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf01109g03003.1	sp|P52855|RLA1_MAIZE	*-*-	60S acidic ribosomal protein P1	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf03503g00023.1	AT1G76050.2	*-**	Pseudouridine synthase family protein LENGTH=430	IPR002942 (RNA-binding S4 domain), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf06809g00012.1	AT2G36770.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04285g03020.1	AT2G02860.1	***-	sucrose transporter 2 LENGTH=594	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf09133g03010.1	sp|Q86MW9|SINA_SCHMA	*-**	E3 ubiquitin-protein ligase sina	IPR004162 (E3 ubiquitin-protein ligase SINA like)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development)
Niben101Scf03864g02001.1	sp|Q54EQ8|NUP98_DICDI	*-**	Nuclear pore complex protein Nup98-Nup96	IPR007230 (Peptidase S59, nucleoporin)	GO:0005643 (nuclear pore), GO:0006810 (transport)
Niben101Scf13379g00006.1	sp|P17198|RS7_SULAC	***-	30S ribosomal protein S7	IPR000235 (Ribosomal protein S5/S7), IPR023798 (Ribosomal protein S7 domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0006412 (translation)
Niben101Scf08869g02004.1	sp|Q8ZXM4|SPEE_PYRAE	***-	Polyamine aminopropyl transferase	IPR001045 (Spermidine/spermine synthases family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003824 (catalytic activity)
Niben101Scf03781g04005.1	gb|KEH42902.1|	--*-	Serine/Threonine kinase family protein [Medicago truncatula]		
Niben101Scf04181g00025.1	sp|Q9LYK9|RS263_ARATH	***-	40S ribosomal protein S26-3	IPR000892 (Ribosomal protein S26e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02074g03016.1			Unknown protein		
Niben101Scf03062g06006.1	sp|Q9SIZ6|GDL47_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04122g03017.1	gb|AFK31166.1|	***-	Hd3a, partial [Oryza rufipogon]	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf09409g01013.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00735g06017.1	sp|O65628|CTU2_ARATH	****	Cytoplasmic tRNA 2-thiolation protein 2	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR019407 (Thiouridylase, cytoplasmic, subunit 2)	GO:0000049 (tRNA binding), GO:0002098 (tRNA wobble uridine modification), GO:0034227 (tRNA thio-modification)
Niben101Scf03469g04007.1	sp|Q9FI80|PP425_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf35093g00001.1	sp|Q1MID5|RS3_RHIL3	*-*-	30S ribosomal protein S3	IPR001351 (Ribosomal protein S3, C-terminal)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07527g03005.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf06743g00022.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01623g02017.1	AT1G66340.1	****	Signal transduction histidine kinase, hybrid-type, ethylene sensor LENGTH=738	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR029016 (GAF domain-like)	GO:0000155 (phosphorelay sensor kinase activity), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01318g02006.1			Unknown protein		
Niben101Scf07103g01009.1	sp|Q8DLG8|ATPB_THEEB	*-**	ATP synthase subunit beta	IPR005722 (ATPase, F1 complex, beta subunit)	GO:0015986 (ATP synthesis coupled proton transport), GO:0015992 (proton transport), GO:0046034 (ATP metabolic process), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Scf10409g02009.1	AT2G45180.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=134	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf03114g09018.1	sp|A7MFC3|MDTK_CROS8	*-*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf07937g03003.1	AT5G10270.1	****	cyclin-dependent kinase C;1 LENGTH=505	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00428g11001.1	sp|Q2TBG8|UCHL3_BOVIN	****	Ubiquitin carboxyl-terminal hydrolase isozyme L3	IPR001578 (Peptidase C12, ubiquitin carboxyl-terminal hydrolase)	GO:0004843 (ubiquitin-specific protease activity), GO:0005622 (intracellular), GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf02212g00005.1	AT4G13690.1	***-	unknown protein; Has 37 Blast hits to 37 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). LENGTH=249		
Niben101Scf07048g02008.1	sp|Q9FK53|NLAL2_ARATH	*-**	H/ACA ribonucleoprotein complex subunit 1-like protein 2	IPR007504 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1), IPR009000 (Translation protein, beta-barrel domain)	GO:0001522 (pseudouridine synthesis), GO:0031429 (box H/ACA snoRNP complex), GO:0042254 (ribosome biogenesis)
Niben101Scf04614g00001.1	gb|ABD78324.1|	***-	SLL1 protein [Primula vulgaris]		
Niben101Scf09928g01007.1	sp|Q05944|HSP70_HYDVU	--*-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain)	
Niben101Scf31520g00001.1	gb|AES77901.2|	*-*-	aldo/keto reductase family oxidoreductase [Medicago truncatula]	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf05764g01004.1	gb|AIU48487.1|	***-	AT4G36440-like protein, partial [Theobroma cacao]		
Niben101Scf01697g01006.1			Unknown protein		
Niben101Scf13748g00016.1	sp|Q6GGC1|DNAJ_STAAR	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf02389g00012.1	sp|A3AHG5|LEA1_ORYSJ	*-*-	Late embryogenesis abundant protein 1	IPR004238 (Late embryogenesis abundant protein, LEA-3)	
Niben101Scf02117g00007.1	sp|Q04W02|DNLJ_LEPBJ	--*-	DNA ligase		
Niben101Scf04690g02036.1	ref|NP_001056990.1|	*-*-	[Oryza sativa Japonica Group]		
Niben101Scf01677g02005.1			Unknown protein		
Niben101Scf02465g00010.1	sp|Q5BJQ2|FA63A_RAT	*-*-	Protein FAM63A	IPR007518 (Protein of unknown function DUF544)	
Niben101Scf01775g00007.1	sp|Q8VYE4|PTR12_ARATH	***-	Protein NRT1/ PTR FAMILY 4.5	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03500g02019.1	sp|B3R3R6|F16A1_CUPTR	****	Fructose-1,6-bisphosphatase class 1 1	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Ctg08063g00002.1			Unknown protein		
Niben101Scf00159g04005.1			Unknown protein		
Niben101Scf01782g07017.1	sp|Q9LDG2|TBL10_ARATH	*-*-	Protein trichome birefringence-like 10	IPR026057 (PC-Esterase)	
Niben101Scf07141g00013.1	AT2G24530.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=407	IPR024738 (Transcriptional coactivator Hfi1/Transcriptional adapter 1)	GO:0070461 (SAGA-type complex)
Niben101Scf03779g03004.1	sp|Q94K00|TBL28_ARATH	***-	Protein trichome birefringence-like 28	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	GO:0050826 (response to freezing)
Niben101Scf01267g01020.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf07334g03005.1	ref|XP_002530243.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF32149.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02268g03001.1	emb|CDY59444.1|	***-	BnaC03g76520D [Brassica napus]		
Niben101Scf04638g00013.1	sp|Q0HK79|TRPD_SHESM	***-	Anthranilate phosphoribosyltransferase	IPR000312 (Glycosyl transferase, family 3)	GO:0008152 (metabolic process), GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf00747g04003.1	emb|CDY55210.1|	*-*-	BnaCnng28470D [Brassica napus]		
Niben101Scf12789g00006.1	sp|Q9LV60|CRR55_ARATH	***-	Cysteine-rich repeat secretory protein 55	IPR002902 (Gnk2-homologous domain)	
Niben101Scf02569g00023.1	gb|ADX62210.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia caulescens]		
Niben101Scf02337g00006.1			Unknown protein		
Niben101Scf00541g03002.1			Unknown protein		
Niben101Scf03170g05005.1	AT3G24840.1	*-*-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=579	IPR001251 (CRAL-TRIO domain)	
Niben101Scf02218g00001.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf00912g08004.1	sp|Q929G7|CLPB_LISIN	--*-	Chaperone protein ClpB	IPR004176 (Clp, N-terminal), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0019538 (protein metabolic process)
Niben101Scf02809g00003.1	sp|Q6P121|HYCCI_DANRE	*-*-	Hyccin	IPR018619 (Hyccin)	
Niben101Scf02517g16015.1	sp|Q66KL9|RBM42_XENTR	--**	RNA-binding protein 42	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02395g04006.1	sp|Q8LC03|ATB13_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-13	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008289 (lipid binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00783g02006.1	sp|Q9FJN9|PABN2_ARATH	****	Polyadenylate-binding protein 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00104g03001.1	sp|P08985|H2AV_DROME	***-	Histone H2A.v	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf02346g02002.1	AT2G44230.1	*-*-	Plant protein of unknown function (DUF946) LENGTH=542	IPR009291 (Vacuolar protein sorting-associated protein 62)	
Niben101Scf02399g04004.1	gb|KEH35013.1|	***-	rRNA processing/ribosome biogenesis protein [Medicago truncatula]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00592g00014.1	sp|Q9ZPV9|SY112_ARATH	*-*-	Syntaxin-112	IPR010989 (t-SNARE)	GO:0005515 (protein binding), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf02793g03001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf20010g00002.1	sp|Q9ZVX5|PP156_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01385g12009.1	AT4G34310.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=1228	IPR012908 (GPI inositol-deacylase PGAP1-like), IPR016024 (Armadillo-type fold), IPR029058 (Alpha/Beta hydrolase fold)	GO:0005488 (binding), GO:0006505 (GPI anchor metabolic process), GO:0006886 (intracellular protein transport), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04040g00010.1	sp|Q9FMU5|UTP18_ARATH	***-	U3 small nucleolar RNA-associated protein 18 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf06750g02015.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00780g03003.1	AT4G29400.1	***-	Protein of unknown function (DUF3531) LENGTH=302	IPR021920 (Protein of unknown function DUF3531)	
Niben101Scf02511g04004.1	sp|Q700C7|SPCH_ARATH	***-	Transcription factor SPEECHLESS	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02145g06005.1	ref|XP_003610469.1|	***-	Lysine-specific demethylase 3A-B [Medicago truncatula] gb|AES92666.1| transcription factor jumonji (JmjC) domain protein [Medicago truncatula]	IPR001841 (Zinc finger, RING-type), IPR003347 (JmjC domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07639g03012.1	sp|Q2UB20|ALG8_ASPOR	***-	Dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase	IPR004856 (Glycosyl transferase, ALG6/ALG8)	GO:0005789 (endoplasmic reticulum membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00245g02012.1	AT4G16110.1	*-*-	response regulator 2 LENGTH=664	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf07797g00003.1	sp|P10656|GLNA_CLOSA	*-*-	Glutamine synthetase	IPR014746 (Glutamine synthetase/guanido kinase, catalytic domain)	GO:0003824 (catalytic activity), GO:0004356 (glutamate-ammonia ligase activity), GO:0006807 (nitrogen compound metabolic process)
Niben101Scf07320g00019.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf01706g00025.1	AT1G64640.1	***-	early nodulin-like protein 8 LENGTH=191	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf04431g03012.1	sp|O81062|SIP_ARATH	****	Signal peptide peptidase	IPR006639 (Presenilin/signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf15657g01010.1	AT3G25440.1	****	RNA-binding CRS1 / YhbY (CRM) domain protein LENGTH=444	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf02168g04009.1	sp|Q93YX4|APRL5_ARATH	***-	5'-adenylylsulfate reductase-like 5	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf01968g01039.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf01041g05008.1	AT5G64420.1	*-*-	DNA polymerase V family LENGTH=1306		
Niben101Scf02538g03007.1			Unknown protein		
Niben101Scf03330g00003.1	AT2G34357.1	***-	ARM repeat superfamily protein LENGTH=1280	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02404g02034.1	sp|P64185|GLPD2_MYCBO	*-**	Glycerol-3-phosphate dehydrogenase 2	IPR000447 (FAD-dependent glycerol-3-phosphate dehydrogenase), IPR006076 (FAD dependent oxidoreductase)	GO:0004368 (glycerol-3-phosphate dehydrogenase activity), GO:0006072 (glycerol-3-phosphate metabolic process), GO:0009331 (glycerol-3-phosphate dehydrogenase complex), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10476g02004.1	emb|CDY18984.1|	*-*-	BnaC01g20840D [Brassica napus]		
Niben101Scf01413g00003.1	ref|NP_001152575.1|	****	deoxyribonuclease ycfH [Zea mays] ref|XP_008668189.1| PREDICTED: deoxyribonuclease ycfH isoform X1 [Zea mays] gb|ACG48299.1| deoxyribonuclease ycfH [Zea mays] gb|ACN27839.1| unknown [Zea mays] tpg|DAA36364.1| TPA: deoxyribonuclease ycfH isoform 1 [Zea mays] tpg|DAA36365.1| TPA: deoxyribonuclease ycfH isoform 2 [Zea mays]	IPR001130 (TatD family)	GO:0016888 (endodeoxyribonuclease activity, producing 5'-phosphomonoesters)
Niben101Scf01236g05023.1			Unknown protein		
Niben101Scf34935g00001.1	gb|AFI44296.1|	****	transport membrane protein, partial (mitochondrion) [Silene vulgaris]	IPR002033 (Sec-independent periplasmic protein translocase TatC)	GO:0016021 (integral component of membrane)
Niben101Scf03952g07001.1	AT1G01320.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=1797	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02562g03012.1	AT5G25280.1	*-*-	serine-rich protein-related LENGTH=220		
Niben101Scf08630g00018.1			Unknown protein	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf01958g04004.1			Unknown protein		
Niben101Scf06106g01016.1	sp|Q9SCU9|BGA13_ARATH	*-*-	Beta-galactosidase 13	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf06698g03016.1	sp|Q8DLP3|ATPA_THEEB	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02941g00008.1	sp|Q6DYE5|U496K_ARATH	***-	UPF0496 protein	IPR007749 (Protein of unknown function DUF677)	
Niben101Scf00152g02001.1	emb|CDY15672.1|	--*-	BnaA07g08430D [Brassica napus] emb|CDX94612.1| BnaC07g10460D [Brassica napus]		
Niben101Scf00244g03012.1	ref|NP_001044596.2|	*-*-	[Oryza sativa Japonica Group] dbj|BAF06510.2| [Oryza sativa Japonica Group]	IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf11037g02002.1	ref|XP_002524800.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF37643.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf09355g01011.1			Unknown protein		
Niben101Scf00573g02013.1	ref|XP_010104653.1|	--*-	UBX domain-containing protein 1 [Morus notabilis] gb|EXC01459.1| UBX domain-containing protein 1 [Morus notabilis]		
Niben101Scf06221g04006.1	ref|XP_002524530.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF37857.1| conserved hypothetical protein [Ricinus communis]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf13942g00027.1	sp|Q9C690|BH122_ARATH	*-*-	Transcription factor bHLH122	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00272g09009.1	AT1G26850.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=616	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf03710g11042.1			Unknown protein		
Niben101Scf05044g00015.1	ref|XP_007023712.1|	***-	To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao] gb|EOY26334.1| To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao]		
Niben101Scf07744g00028.1	sp|P81394|MYB15_ANTMA	*-*-	Myb-related protein 315	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05710g03032.1	AT5G02880.1	*-**	ubiquitin-protein ligase 4 LENGTH=1502	IPR000569 (HECT), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf03985g04026.1	gb|AES92256.2|	--*-	subtilisin-like serine protease [Medicago truncatula]	IPR010259 (Peptidase S8 propeptide/proteinase inhibitor I9)	
Niben101Scf01521g12008.1			Unknown protein		
Niben101Scf04407g00002.1	sp|P55339|ECSA_BACSU	*-**	ABC-type transporter ATP-binding protein EcsA	IPR003439 (ABC transporter-like), IPR026082 (ABC transporter A, ABCA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005215 (transporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity)
Niben101Ctg12839g00001.1	ref|NP_001147826.1|	*-**	aspartic-type endopeptidase/ pepsin A [Zea mays] gb|ACG28820.1| aspartic-type endopeptidase/ pepsin A [Zea mays]	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf12526g00010.1	AT2G42005.1	***-	Transmembrane amino acid transporter family protein LENGTH=413	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf01190g01009.1	ref|XP_002512968.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF49471.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03948g01011.1	sp|Q5KYR3|IOLC_GEOKA	***-	5-dehydro-2-deoxygluconokinase	IPR029056 (Ribokinase-like)	
Niben101Scf01033g01003.1	sp|Q9ZU91|E133_ARATH	***-	Glucan endo-1,3-beta-glucosidase 3	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07788g04009.1	dbj|BAH19925.1|	--*-	[Arabidopsis thaliana]		
Niben101Scf11424g02012.1			Unknown protein		
Niben101Scf02665g07005.1	ref|XP_002525632.1|	****	hydrolase, acting on ester bonds, putative [Ricinus communis] gb|EEF36750.1| hydrolase, acting on ester bonds, putative [Ricinus communis]	IPR007312 (Phosphoesterase)	GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf08002g03017.1	AT5G08060.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=131		
Niben101Scf03253g01003.1	ref|XP_007029634.1|	*-*-	Structural constituent of ribosome, putative [Theobroma cacao] gb|EOY10136.1| Structural constituent of ribosome, putative [Theobroma cacao]		
Niben101Scf03621g00001.1	sp|Q8LF21|DRP1C_ARATH	***-	Dynamin-related protein 1C	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf24570g00001.1			Unknown protein		
Niben101Scf02494g07010.1	AT5G62290.1	****	nucleotide-sensitive chloride conductance regulator (ICln) family protein LENGTH=229	IPR003521 (ICln)	GO:0000387 (spliceosomal snRNP assembly), GO:0005829 (cytosol), GO:0005886 (plasma membrane), GO:0006821 (chloride transport), GO:0006884 (cell volume homeostasis), GO:0034709 (methylosome), GO:0034715 (pICln-Sm protein complex)
Niben101Scf08876g00003.1	sp|Q940Y1|ORP2A_ARATH	***-	Oxysterol-binding protein-related protein 2A	IPR000648 (Oxysterol-binding protein), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf02041g05002.1	gb|ABF93805.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf00378g05002.1			Unknown protein		
Niben101Scf04407g00016.1	AT5G62550.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43; Bacteria - 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses - 55; Other Eukaryotes - 5075 (source: NCBI BLink). LENGTH=487		
Niben101Scf01116g01002.1	sp|Q2RQH9|RECA_RHORT	***-	Protein RecA	IPR013765 (DNA recombination and repair protein RecA), IPR023400 (DNA recombination and repair protein RecA, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003697 (single-stranded DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0006281 (DNA repair), GO:0008094 (DNA-dependent ATPase activity), GO:0009432 (SOS response)
Niben101Scf03706g03013.1	gb|ACG39131.1|	****	transferase, transferring glycosyl groups [Zea mays]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf07168g02012.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08211g01004.1	sp|A2X2K3|2ABB_ORYSI	*-**	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	IPR000009 (Protein phosphatase 2A, regulatory subunit PR55), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0000159 (protein phosphatase type 2A complex), GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf00345g01001.1	gb|AAS99678.1|	--*-	[Arabidopsis thaliana] gb|AAT41818.1| [Arabidopsis thaliana]		
Niben101Scf03758g01004.1	emb|CDX77964.1|	***-	BnaA09g31590D [Brassica napus]		
Niben101Scf05004g04026.1	AT5G10700.1	*-**	Peptidyl-tRNA hydrolase II (PTH2) family protein LENGTH=200	IPR002833 (Peptidyl-tRNA hydrolase, PTH2), IPR023476 (Peptidyl-tRNA hydrolase II domain)	GO:0004045 (aminoacyl-tRNA hydrolase activity)
Niben101Scf08855g00010.1	AT1G14750.1	*-*-	Cyclin family protein LENGTH=578	IPR013763 (Cyclin-like)	
Niben101Scf04817g00014.1	sp|O81832|Y4729_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain)	GO:0048544 (recognition of pollen)
Niben101Scf02508g06006.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf08455g00002.1	ref|XP_007039066.1|	***-	Gamma-irradiation and mitomycin c induced 1, putative isoform 4 [Theobroma cacao] gb|EOY23567.1| Gamma-irradiation and mitomycin c induced 1, putative isoform 4 [Theobroma cacao]	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf07058g05019.1	AT2G46420.1	***-	Plant protein 1589 of unknown function LENGTH=363	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf00015g03012.1	gb|KEH43276.1|	--*-	DUF4283 domain protein [Medicago truncatula]		
Niben101Scf00800g01001.1	sp|Q8F812|PYRB_LEPIN	****	Aspartate carbamoyltransferase	IPR006130 (Aspartate/ornithine carbamoyltransferase)	GO:0004070 (aspartate carbamoyltransferase activity), GO:0006207 ('de novo' pyrimidine nucleobase biosynthetic process), GO:0006520 (cellular amino acid metabolic process), GO:0016597 (amino acid binding), GO:0016743 (carboxyl- or carbamoyltransferase activity)
Niben101Scf08415g01003.1	AT3G48970.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=140	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf02511g05005.1	sp|Q03066|RPSC_NOSS1	****	RNA polymerase sigma-C factor	IPR014284 (RNA polymerase sigma-70 like domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Scf03461g02007.1	ref|NP_001148046.1|	****	LOC100281655 [Zea mays] gb|ACG29576.1| metal ion binding protein [Zea mays]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf07690g00003.1	AT1G43770.2	*-*-	RING/FYVE/PHD zinc finger superfamily protein LENGTH=431	IPR003656 (Zinc finger, BED-type)	GO:0003677 (DNA binding)
Niben101Scf00781g02001.1	sp|Q5F3V3|PDS5A_CHICK	*-*-	Sister chromatid cohesion protein PDS5 homolog A	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf05855g03007.1	AT5G15270.2	*-**	RNA-binding KH domain-containing protein LENGTH=548	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf01269g13037.1	sp|A2SLD2|RS4_METPP	--*-	30S ribosomal protein S4	IPR002942 (RNA-binding S4 domain), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding)
Niben101Scf00508g00002.1	sp|Q8RWL2|CDPKT_ARATH	*-**	Calcium-dependent protein kinase 29	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03018g20001.1	sp|P25360|PHO87_YEAST	--*-	Inorganic phosphate transporter PHO87		
Niben101Scf04133g02019.1	sp|Q3V544|RPOC2_ACOCL	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf01494g05020.1	sp|Q4R380|DPOLL_MACFA	*-**	DNA polymerase lambda	IPR022312 (DNA polymerase family X), IPR028207 (DNA polymerase beta, palm domain), IPR029398 (DNA polymerase beta, thumb domain)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0016779 (nucleotidyltransferase activity), GO:0034061 (DNA polymerase activity)
Niben101Scf06737g00042.1	sp|Q8L7R2|KHSE_ARATH	*-*-	Homoserine kinase	IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0005524 (ATP binding)
Niben101Scf00339g03024.1	AT3G55590.1	***-	Glucose-1-phosphate adenylyltransferase family protein LENGTH=364	IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf01539g03009.1	AT2G25850.2	****	poly(A) polymerase 2 LENGTH=800	IPR002934 (Nucleotidyl transferase domain), IPR007012 (Poly(A) polymerase, central domain), IPR011068 (Nucleotidyltransferase, class I, C-terminal-like)	GO:0003723 (RNA binding), GO:0004652 (polynucleotide adenylyltransferase activity), GO:0005634 (nucleus), GO:0016779 (nucleotidyltransferase activity), GO:0031123 (RNA 3'-end processing), GO:0043631 (RNA polyadenylation)
Niben101Scf00270g12017.1	sp|Q9SEE4|PIRL_SOLLC	*-*-	Pirin-like protein	IPR012093 (Pirin), IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf01320g03008.1	sp|O80932|EXPA3_ARATH	***-	Expansin-A3	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf01430g00007.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03488g12007.1	sp|Q66HG4|GALM_RAT	*-*-	Aldose 1-epimerase	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf01338g05001.1	gb|KGC97307.1|	*-*-	taurine catabolism dioxygenase TauD, TfdA family protein [Burkholderia pseudomallei]	IPR003819 (Taurine catabolism dioxygenase TauD/TfdA)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf11480g00009.1	sp|A3MKJ8|CLPP_BURM7	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf07786g00018.1	sp|B6EUA9|PR40A_ARATH	***-	Pre-mRNA-processing protein 40A	IPR001202 (WW domain), IPR002713 (FF domain), IPR027237 (Pre-mRNA-processing protein PRP40)	GO:0005515 (protein binding)
Niben101Scf02853g06014.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf02457g01001.1	AT2G32910.1	*-*-	DCD (Development and Cell Death) domain protein LENGTH=691	IPR013989 (Development/cell death domain)	
Niben101Scf06562g00008.1	sp|Q91WT8|RBM47_MOUSE	*-**	RNA-binding protein 47	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR025742 (Cleavage stimulation factor subunit 2, hinge domain), IPR026896 (Transcription termination and cleavage factor C-terminal domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03710g08004.1	AT4G01590.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) . LENGTH=200	IPR024661 (DNA-directed RNA polymerase III, subunit Rpc31)	
Niben101Scf01926g00002.1	AT2G32380.1	***-	Transmembrane protein 97, predicted LENGTH=168	IPR016964 (Transmembrane protein 6/97)	
Niben101Scf12690g01001.1	sp|P40986|CDC1_YEAST	***-	Cell division control protein 1	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf05750g03001.1	emb|CDY01820.1|	***-	BnaC06g28600D [Brassica napus]	IPR021924 (Protein of unknown function DUF3537)	
Niben101Scf04271g02003.1			Unknown protein		
Niben101Scf00885g09012.1	sp|O23492|INT4_ARATH	*-*-	Inositol transporter 4		
Niben101Scf00811g07018.1	sp|O48771|AGO6_ARATH	*-*-	Protein argonaute 6	IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf08121g01011.1	sp|E7F6F9|KLHL3_DANRE	*-*-	Kelch-like protein 3	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf07883g01005.1	sp|P25249|CYSP1_HORVU	*-**	Cysteine proteinase EP-B 1	IPR013128 (Peptidase C1A)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf11334g03006.1	sp|Q84K00|NAC78_ARATH	--*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	
Niben101Scf17976g01010.1			Unknown protein		
Niben101Scf01494g08004.1	AT1G23750.1	***-	Nucleic acid-binding, OB-fold-like protein LENGTH=137	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf03141g05005.1	sp|Q9SU29|UPL5_ARATH	*-*-	E3 ubiquitin-protein ligase UPL5		
Niben101Scf09133g03016.1	sp|Q4KLJ8|PDCL3_RAT	***-	Phosducin-like protein 3	IPR012336 (Thioredoxin-like fold)	
Niben101Scf01329g01008.1	AT3G51870.1	***-	Mitochondrial substrate carrier family protein LENGTH=381	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf00307g01044.1	sp|Q9M0X5|CRK25_ARATH	*-**	Cysteine-rich receptor-like protein kinase 25	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09107g02009.1	ref|XP_002525992.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF36416.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06024g00004.1	sp|B1JH01|GHRB_YERPY	****	Glyoxylate/hydroxypyruvate reductase B	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03229g00011.1	AT2G33470.1	****	glycolipid transfer protein 1 LENGTH=202	IPR014830 (Glycolipid transfer protein domain)	GO:0005737 (cytoplasm), GO:0017089 (glycolipid transporter activity), GO:0046836 (glycolipid transport), GO:0051861 (glycolipid binding)
Niben101Scf03064g02023.1	ref|XP_002516183.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF46185.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08143g03001.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05294g00034.1	emb|CDX98525.1|	***-	BnaC05g38500D [Brassica napus]	IPR021434 (Protein of unknown function DUF3082)	
Niben101Scf04316g00002.1	sp|Q8ESS3|HIS81_OCEIH	--*-	Histidinol-phosphate aminotransferase 1		
Niben101Scf08141g01010.1	sp|Q8FUZ3|UBIE_BRUSU	--**	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf13141g00013.1	sp|A2AWA9|RBGP1_MOUSE	--**	Rab GTPase-activating protein 1	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf05566g02003.1	gb|ABF81442.1|	*-*-	NBS-LRR type disease resistance protein [Populus trichocarpa]		
Niben101Scf01986g02023.1	AT2G41770.1	***-	Protein of unknown function (DUF288) LENGTH=771	IPR005049 (Protein of unknown function DUF288)	
Niben101Scf05848g00002.1	sp|Q9C0H6|KLHL4_HUMAN	*-*-	Kelch-like protein 4	IPR015915 (Kelch-type beta propeller), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005515 (protein binding)
Niben101Scf12846g00009.1	gb|AES90588.2|	***-	executer 1 [Medicago truncatula]	IPR021894 (Protein of unknown function DUF3506)	
Niben101Scf02021g03005.1	gb|AEW48205.1|	*-*-	disease resistance protein RGH2 [Solanum fernandezianum]		
Niben101Scf08137g00015.1	sp|B1VKG9|PSBC_CRYJA	*-**	Photosystem II CP43 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Ctg15263g00006.1	ref|XP_007012812.1|	--*-	CRS1 / YhbY domain-containing protein, putative isoform 1 [Theobroma cacao] ref|XP_007012813.1| CRS1 / YhbY domain-containing protein, putative isoform 1 [Theobroma cacao] ref|XP_007012814.1| CRS1 / YhbY domain-containing protein, putative isoform 1 [Theobroma cacao] gb|EOY30431.1| CRS1 / YhbY domain-containing protein, putative isoform 1 [Theobroma cacao] gb|EOY30432.1| CRS1 / YhbY domain-containing protein, putative isoform 1 [Theobroma cacao] gb|EOY30433.1| CRS1 / YhbY domain-containing protein, putative isoform 1 [Theobroma cacao]		
Niben101Scf00854g04119.1			Unknown protein		
Niben101Scf04727g04007.1	sp|B7ZAQ6|GPHRA_HUMAN	***-	Golgi pH regulator A	IPR015672 (The Golgi pH Regulator), IPR025969 (Abscisic acid G-protein coupled receptor-like domain)	
Niben101Scf04410g05002.1	sp|Q10CQ1|MAD14_ORYSJ	****	MADS-box transcription factor 14	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf07176g00008.1	AT4G21750.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=762	IPR002913 (START domain)	GO:0008289 (lipid binding)
Niben101Scf04312g00010.1	AT3G60310.1	***-	unknown protein; Has 22 Blast hits to 18 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=687		
Niben101Scf00664g00001.1			Unknown protein		
Niben101Scf04038g03011.1	AT2G41430.1	***-	dehydration-induced protein (ERD15) LENGTH=163	IPR009818 (Ataxin-2, C-terminal)	
Niben101Scf02262g01009.1	sp|Q3IMY5|RL2_NATPD	****	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf01400g00014.1	sp|E3SU11|ALL13_OLEEU	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf04761g00017.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01334g04006.1	AT3G17510.1	****	CBL-interacting protein kinase 1 LENGTH=444	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf14374g00008.1	sp|Q6D437|MSBA_PECAS	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf03861g02004.1	ref|WP_008310550.1|	***-	Protein of unknown function (DUF3067) [Leptolyngbya sp. PCC 6406]	IPR021420 (Protein of unknown function DUF3067)	
Niben101Ctg13733g00003.1	sp|Q07346|DCE_PETHY	*-*-	Glutamate decarboxylase	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00875g07009.1	AT1G29500.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02364g04007.1	sp|Q9XIN8|FB119_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00176g06015.1	AT5G54680.1	***-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=234	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05233g00006.1	AT3G21480.1	*-*-	BRCT domain-containing DNA repair protein LENGTH=1041	IPR001357 (BRCT domain)	
Niben101Scf00797g17012.1	sp|P33731|SRP72_CANFA	*-**	Signal recognition particle subunit SRP72	IPR013699 (Signal recognition particle, SRP72 subunit, RNA-binding), IPR026270 (Signal recognition particle, SRP72 subunit)	GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0048500 (signal recognition particle)
Niben101Scf13950g00006.1	AT1G72820.1	***-	Mitochondrial substrate carrier family protein LENGTH=349	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf07284g00001.1	sp|P0C8A0|PP275_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06499g01002.1	sp|Q9LJB7|BBX32_ARATH	*-*-	B-box zinc finger protein 32		
Niben101Scf02086g00004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06804g00005.1			Unknown protein		
Niben101Scf01847g02005.1	sp|Q9LT23|BH121_ARATH	***-	Transcription factor bHLH121	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00525g00006.1	gb|AAU89186.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf05151g01011.1	sp|Q54YW1|ELMOA_DICDI	*-*-	ELMO domain-containing protein A	IPR006816 (Engulfment/cell motility, ELMO)	GO:0005856 (cytoskeleton), GO:0006909 (phagocytosis)
Niben101Scf01001g07005.1	ref|XP_002512815.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF49318.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00893g00005.1			Unknown protein		
Niben101Scf07511g01004.1	AT5G19760.1	****	Mitochondrial substrate carrier family protein LENGTH=298	IPR002030 (Mitochondrial brown fat uncoupling protein), IPR023395 (Mitochondrial carrier domain)	GO:0006839 (mitochondrial transport), GO:0031966 (mitochondrial membrane)
Niben101Scf10737g00005.1	AT5G17000.1	****	Zinc-binding dehydrogenase family protein LENGTH=345	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00415g03014.1	sp|Q8H1S4|ACCH3_ARATH	*-*-	1-aminocyclopropane-1-carboxylate oxidase homolog 3	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf01147g01012.1	AT2G25737.1	***-	Sulfite exporter TauE/SafE family protein LENGTH=476	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf14577g01002.1	sp|Q8LGH4|CUL4_ARATH	*-**	Cullin-4	IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf06825g01017.1	AT1G69960.1	***-	serine/threonine protein phosphatase 2A LENGTH=307	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf03436g02012.1	AT1G64830.1	***-	Eukaryotic aspartyl protease family protein LENGTH=431	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02269g00005.1	AT3G08920.1	***-	Rhodanese/Cell cycle control phosphatase superfamily protein LENGTH=214	IPR001763 (Rhodanese-like domain)	
Niben101Scf09678g02002.1	sp|Q0IQU1|LAC22_ORYSJ	***-	Laccase-22	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Ctg10427g00001.1	gb|AID55065.1|	*-*-	disease resistance protein, partial [Solanum habrochaites]		
Niben101Scf03843g00004.1	AT1G32490.1	*-*-	RNA helicase family protein LENGTH=1044		
Niben101Scf02877g03001.1	sp|Q94J16|HFA4B_ORYSJ	*-**	Heat stress transcription factor A-4b	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02310g04019.1	sp|P49098|CYB5_TOBAC	*-*-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf03455g02001.1	sp|Q96LU5|IMP1L_HUMAN	****	Mitochondrial inner membrane protease subunit 1	IPR000223 (Peptidase S26A, signal peptidase I), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf06687g01011.1	AT1G57540.1	***-	unknown protein; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=103		
Niben101Scf10881g00034.1	sp|Q9LK50|AB26G_ARATH	*-*-	ABC transporter G family member 26		
Niben101Scf01972g00009.1	sp|O24172|ALL6_OLEEU	***-	Major pollen allergen Ole e 6	IPR015333 (Pollen allergen ole e 6)	
Niben101Scf03504g02004.1	AT5G52340.1	****	exocyst subunit exo70 family protein A2 LENGTH=631	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf02891g00008.1	sp|O24606|EIN3_ARATH	***-	Protein ETHYLENE INSENSITIVE 3	IPR023278 (Ethylene insensitive 3-like protein, DNA-binding domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf07247g04003.1	sp|O23144|PPI1_ARATH	****	Proton pump-interactor 1	IPR029669 (Proton pump-interactor)	GO:0005783 (endoplasmic reticulum), GO:0005886 (plasma membrane), GO:0010155 (regulation of proton transport)
Niben101Scf03274g03001.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf11552g01003.1	AT5G46070.1	****	Guanylate-binding family protein LENGTH=1082	IPR003191 (Guanylate-binding protein, C-terminal), IPR015894 (Guanylate-binding protein, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf09644g00014.1	AT5G20220.1	*-*-	zinc knuckle (CCHC-type) family protein LENGTH=393		
Niben101Scf05414g02028.1	sp|Q72NX1|RIMP_LEPIC	*-*-	Ribosome maturation factor RimP	IPR003728 (Ribosome maturation factor RimP), IPR028989 (Ribosome maturation factor RimP, N-terminal)	
Niben101Scf01804g00075.1	sp|Q6BDJ4|MATK_PINCE	--*-	Maturase K	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf13455g00005.1	AT4G01240.1	*-*-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=659	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf01998g03009.1	AT2G26190.1	***-	calmodulin-binding family protein LENGTH=532		
Niben101Scf11791g00007.1	AT4G02370.1	***-	Protein of unknown function, DUF538 LENGTH=167	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf18639g00021.1	sp|Q9LDF2|LAG11_ARATH	***-	LAG1 longevity assurance homolog 1	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf20493g00012.1	sp|Q9FJD5|LAC17_ARATH	***-	Laccase-17	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00176g10001.1	sp|Q1JPL7|PME18_ARATH	****	Pectinesterase/pectinesterase inhibitor 18	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf08195g06014.1	AT5G36130.1	*-*-	Cytochrome P450 superfamily protein LENGTH=140	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf37335g00004.1	AT1G74530.3	***-	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). LENGTH=314		
Niben101Scf08926g08016.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06812g00005.1	ref|XP_002510336.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF52523.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf05438g05017.1	tpg|DAA51287.1|	***-	TPA: hypothetical protein ZEAMMB73_941494 [Zea mays]		
Niben101Scf13455g00004.1	sp|B5DS72|MOC31_DROPS	*-*-	Adenylyltransferase and sulfurtransferase MOCS3-1	IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity)
Niben101Scf00568g04054.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02854g10001.1	gb|AES64317.2|	--*-	Cox19-like CHCH family protein [Medicago truncatula]		
Niben101Scf00176g05008.1	ref|WP_017253487.1|	*-*-	(2R)-phospho-3-sulfolactate synthase [Coxiella burnetii]	IPR003830 ((2R)-phospho-3-sulpholactate synthase, ComA), IPR013785 (Aldolase-type TIM barrel), IPR015500 (Peptidase S8, subtilisin-related)	GO:0003824 (catalytic activity), GO:0019295 (coenzyme M biosynthetic process)
Niben101Scf11609g03001.1	sp|F4JSG3|RFA1E_ARATH	--*-	Replication protein A 70 kDa DNA-binding subunit E	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf19421g00013.1	sp|P40973|PLY_LILLO	****	Pectate lyase	IPR007524 (Pectate lyase, N-terminal), IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	GO:0030570 (pectate lyase activity)
Niben101Scf04134g01007.1			Unknown protein		
Niben101Scf02074g05057.1			Unknown protein		
Niben101Scf09742g00014.1	emb|CDY28215.1|	***-	BnaA01g06340D [Brassica napus]	IPR019460 (Autophagy-related protein 11), IPR029071 (Ubiquitin-related domain)	
Niben101Scf03531g00018.1			Unknown protein		
Niben101Scf02759g01004.1	sp|Q6AWY6|GRF3_ORYSJ	***-	Growth-regulating factor 3	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf11706g00006.1	sp|Q9SJ20|RIR1_ARATH	****	Ribonucleoside-diphosphate reductase large subunit	IPR000788 (Ribonucleotide reductase large subunit, C-terminal), IPR008926 (Ribonucleotide reductase R1 subunit, N-terminal)	GO:0004748 (ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor), GO:0005524 (ATP binding), GO:0006260 (DNA replication), GO:0055114 (oxidation-reduction process)
Niben101Scf00046g05010.1	sp|B9EB52|DIVIB_MACCJ	--*-	Cell division protein DivIB	IPR013177 (Domain of unknown function DUF1713, mitochondria)	
Niben101Scf03143g05002.1	AT1G12990.1	****	beta-1,4-N-acetylglucosaminyltransferase family protein LENGTH=392	IPR006813 (Glycosyl transferase, family 17)	GO:0003830 (beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity), GO:0006487 (protein N-linked glycosylation), GO:0016020 (membrane)
Niben101Scf00286g01022.1	ref|XP_002517031.1|	--*-	acylamino-acid-releasing enzyme, putative [Ricinus communis] gb|EEF45194.1| acylamino-acid-releasing enzyme, putative [Ricinus communis]		
Niben101Scf09079g02021.1	AT5G35200.1	***-	ENTH/ANTH/VHS superfamily protein LENGTH=544	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf38186g00002.1	AT5G19630.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=228	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01700g00004.1	sp|Q42430|ZFP1_WHEAT	***-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf05439g03002.1			Unknown protein		
Niben101Scf05948g02026.1	sp|Q9ZV88|BEH4_ARATH	***-	BES1/BZR1 homolog protein 4	IPR008540 (BZR1, transcriptional repressor)	
Niben101Scf01571g04001.1	sp|O04379|AGO1_ARATH	***-	Protein argonaute 1	IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785), IPR024357 (Argonaut, glycine-rich domain)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf08322g00001.1	sp|Q9C6X2|SCAM4_ARATH	****	Secretory carrier-associated membrane protein 4	IPR007273 (SCAMP)	GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf04504g02028.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf07069g00009.1	AT3G25730.1	*-**	ethylene response DNA binding factor 3 LENGTH=333	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf00854g01011.1	sp|Q39Y03|RL2_GEOMG	*-*-	50S ribosomal protein L2	IPR012340 (Nucleic acid-binding, OB-fold), IPR014722 (Ribosomal protein L2 domain 2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00661g00002.1	AT2G43840.2	***-	UDP-glycosyltransferase 74 F1 LENGTH=449	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03203g08012.1	sp|Q10716|CYSP1_MAIZE	*-**	Cysteine proteinase 1	IPR013128 (Peptidase C1A)	GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00984g10009.1			Unknown protein		
Niben101Scf02212g02008.1	sp|Q8L6Y4|EMF2_ARATH	*-*-	Polycomb group protein EMBRYONIC FLOWER 2	IPR019135 (Polycomb protein, VEFS-Box)	
Niben101Scf28763g00002.1	emb|CDY10479.1|	--*-	BnaCnng03800D [Brassica napus]		
Niben101Scf01750g10021.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2		
Niben101Scf11361g01018.1	sp|Q814Q2|SPEB_BACCR	***-	Agmatinase	IPR006035 (Ureohydrolase), IPR023696 (Ureohydrolase domain)	GO:0016813 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines), GO:0046872 (metal ion binding)
Niben101Scf07494g00001.1	ref|XP_002533928.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF28457.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03595g01002.1	sp|O95563|MPC2_HUMAN	****	Mitochondrial pyruvate carrier 2	IPR005336 (Mitochondrial pyruvate carrier)	GO:0005743 (mitochondrial inner membrane), GO:0006850 (mitochondrial pyruvate transport)
Niben101Scf23228g00002.1	sp|Q6NVE8|WDR44_MOUSE	--*-	WD repeat-containing protein 44	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf06153g01006.1	AT1G32520.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 143 Blast hits to 142 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). LENGTH=239	IPR006571 (TLDc domain)	
Niben101Scf01063g10013.1	ref|NP_001149203.1|	***-	seed specific protein Bn15D1B [Zea mays] gb|ACG34551.1| seed specific protein Bn15D1B [Zea mays]		
Niben101Scf03503g00022.1	sp|P16924|P4HA1_CHICK	*-*-	Prolyl 4-hydroxylase subunit alpha-1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00220g04020.1	gb|ADV30315.1|	*-*-	GLABRA2, partial [Erythranthe guttata]		
Niben101Ctg02589g00001.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf04396g04026.1	ref|NP_188895.1|	****	GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] dbj|BAB01471.1| alanine acetyl transferase-like protein [Arabidopsis thaliana] gb|ABN04781.1| [Arabidopsis thaliana] gb|AEE76653.1| GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf00361g02004.1	sp|Q9FUJ1|CKX7_ARATH	****	Cytokinin dehydrogenase 7	IPR016164 (FAD-linked oxidase-like, C-terminal), IPR016166 (FAD-binding, type 2), IPR016170 (Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0009690 (cytokinin metabolic process), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0019139 (cytokinin dehydrogenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08729g01003.1	sp|Q9ER47|KCNH7_MOUSE	*-**	Potassium voltage-gated channel subfamily H member 7	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR013099 (Two pore domain potassium channel domain)	GO:0005249 (voltage-gated potassium channel activity), GO:0006813 (potassium ion transport), GO:0016020 (membrane)
Niben101Scf04889g00022.1	sp|P44933|KEFX_HAEIN	*-*-	Glutathione-regulated potassium-efflux system protein	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02144g00003.1	emb|CDY18986.1|	--*-	BnaC01g20820D [Brassica napus]		
Niben101Scf03648g04013.1			Unknown protein		
Niben101Scf11291g00012.1	sp|Q00004|SRP68_CANFA	****	Signal recognition particle subunit SRP68	IPR011990 (Tetratricopeptide-like helical domain), IPR026258 (Signal recognition particle subunit SRP68)	GO:0005047 (signal recognition particle binding), GO:0005515 (protein binding), GO:0005786 (signal recognition particle, endoplasmic reticulum targeting), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0030942 (endoplasmic reticulum signal peptide binding)
Niben101Scf05011g01016.1	sp|Q9LKJ1|HIBC1_ARATH	*-*-	3-hydroxyisobutyryl-CoA hydrolase 1	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01383g00010.1	gb|ADK98189.1|	*-*-	glycosyl hydrolase [Schiedea globosa]		
Niben101Scf06153g03008.1	AT5G46640.1	*-*-	AT hook motif DNA-binding family protein LENGTH=386	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf02237g07012.1	AT5G50000.1	****	Protein kinase superfamily protein LENGTH=385	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03080g04002.1	AT2G23610.1	***-	methyl esterase 3 LENGTH=263	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf06291g03007.1	sp|Q8L8A5|GIF1_ARATH	*-*-	GRF1-interacting factor 1	IPR007726 (SS18 family)	
Niben101Scf19766g00001.1	emb|CDY14706.1|	***-	BnaC05g19630D [Brassica napus]	IPR007679 (Protein of unknown function DUF569), IPR008999 (Actin cross-linking)	
Niben101Scf01812g01010.1	sp|E6WHK1|TATD_PANSA	***-	Tat-linked quality control protein TatD	IPR001130 (TatD family)	GO:0016888 (endodeoxyribonuclease activity, producing 5'-phosphomonoesters)
Niben101Scf10476g06003.1	sp|B8ISA1|RL18_METNO	*-*-	50S ribosomal protein L18	IPR005484 (Ribosomal protein L18/L5)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00199g05005.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf01227g00005.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01142g00013.1	AT1G52510.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=380	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf13029g00004.1	emb|CDY00898.1|	***-	BnaC05g43020D [Brassica napus]	IPR007033 (Transcriptional activator, plants)	
Niben101Scf20914g00009.1	sp|Q9Y333|LSM2_HUMAN	***-	U6 snRNA-associated Sm-like protein LSm2	IPR010920 (Like-Sm (LSM) domain), IPR016654 (U6 snRNA-associated Sm-like protein LSm2)	GO:0006397 (mRNA processing)
Niben101Scf07395g00029.1	sp|Q9LV10|PTR53_ARATH	***-	Protein NRT1/ PTR FAMILY 2.11	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf04209g01002.1	gb|ACY74744.2|	***-	methanol inducible protein [Nicotiana benthamiana]		
Niben101Scf05107g03014.1	sp|Q9SL03|CALS2_ARATH	*-**	Callose synthase 2	IPR026953 (Callose synthase)	GO:0003843 (1,3-beta-D-glucan synthase activity)
Niben101Scf02537g14008.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf11307g00004.1	AT2G44380.1	***-	Cysteine/Histidine-rich C1 domain family protein LENGTH=247	IPR011424 (C1-like)	GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03644g00004.1	AT4G02050.1	****	sugar transporter protein 7 LENGTH=513	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01154g06005.1	sp|O04719|P2C77_ARATH	*-*-	Protein phosphatase 2C 77	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf14436g04013.1	AT2G30460.1	***-	Nucleotide/sugar transporter family protein LENGTH=353	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf03515g00088.1	emb|CAJ70646.1|	--*-	cytochrome c biogenesis protein [Helianthus annuus]		
Niben101Scf00467g00009.1	AT2G35270.1	*-*-	Predicted AT-hook DNA-binding family protein LENGTH=285	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf03413g00005.1	AT2G36300.1	****	Integral membrane Yip1 family protein LENGTH=255	IPR006977 (Yip1 domain)	GO:0016020 (membrane)
Niben101Scf00799g01005.1	sp|Q8GX69|BGA16_ARATH	***-	Beta-galactosidase 16	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02509g06003.1	sp|Q9UK13|ZN221_HUMAN	--*-	Zinc finger protein 221	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR029789 (Protein TRANSPARENT TESTA 1 like)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf25721g00003.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03255g03017.1	sp|Q54YG5|TPPC5_DICDI	*-*-	Trafficking protein particle complex subunit 5	IPR007194 (Transport protein particle (TRAPP) component), IPR024096 (NO signalling/Golgi transport  ligand-binding domain)	
Niben101Scf08308g04006.1	emb|CDX96341.1|	***-	BnaA07g29520D [Brassica napus]		
Niben101Scf03254g03002.1	AT1G13220.2	*-*-	nuclear matrix constituent protein-related LENGTH=1128		
Niben101Scf03173g00011.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07883g01004.1	sp|Q04189|TAP1_ANTMA	-**-	Protein TAP1		
Niben101Scf05767g06008.1			Unknown protein		
Niben101Scf00107g00008.1	sp|Q7L0R7|RNF44_HUMAN	--*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06551g00016.1			Unknown protein		
Niben101Scf00454g02008.1	sp|O80341|EF102_ARATH	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03732g07011.1	sp|Q7ZT11|ANKR1_CHICK	--*-	Ankyrin repeat domain-containing protein 1	IPR011333 (BTB/POZ fold), IPR020683 (Ankyrin repeat-containing domain), IPR024228 (Domain of unknown function DUF3420)	GO:0005515 (protein binding)
Niben101Scf10132g01029.1	AT5G14660.1	****	peptide deformylase 1B LENGTH=273	IPR000181 (Formylmethionine deformylase), IPR023635 (Peptide deformylase)	GO:0005506 (iron ion binding), GO:0042586 (peptide deformylase activity)
Niben101Scf10836g00012.1	AT4G31990.3	*-*-	aspartate aminotransferase 5 LENGTH=462	IPR000796 (Aspartate/other aminotransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf14003g00001.1	AT1G52510.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=380	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf01514g02006.1	sp|Q9ZUU0|WRK44_ARATH	*-**	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf16329g00019.1	sp|Q9CAU0|SCP6_ARATH	*-**	Serine carboxypeptidase-like 6	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01784g06004.1	AT1G47380.1	***-	Protein phosphatase 2C family protein LENGTH=428	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf05173g03012.1	AT3G60320.1	***-	Protein of unknown function (DUF630 and DUF632) LENGTH=796	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf01517g08002.1	emb|CDO45728.1|	***-	Protein glycosylationmyb-like TTH transcriptional regulator, partial [Leucadendron sheilae]	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf39540g00003.1	sp|Q32P99|UBE2B_BOVIN	*-*-	Ubiquitin-conjugating enzyme E2 B	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR027230 (SUMO-conjugating enzyme Ubc9)	GO:0019789 (SUMO transferase activity)
Niben101Scf12686g01008.1	sp|P52711|CBP23_HORVU	*-**	Serine carboxypeptidase II-3	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01482g02020.1	gb|KEH39459.1|	*-*-	transcription factor IIA, alpha/beta subunit [Medicago truncatula]		
Niben101Scf01269g13036.1	gb|ABO41450.1|	****	NADH dehydrogenase subunit 6 [Vantanea guianensis]	IPR001457 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 6)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00367g10002.1	sp|Q5V5M1|NDK_HALMA	****	Nucleoside diphosphate kinase	IPR001564 (Nucleoside diphosphate kinase)	GO:0004550 (nucleoside diphosphate kinase activity), GO:0005524 (ATP binding), GO:0006165 (nucleoside diphosphate phosphorylation), GO:0006183 (GTP biosynthetic process), GO:0006228 (UTP biosynthetic process), GO:0006241 (CTP biosynthetic process)
Niben101Scf04910g04005.1	sp|Q94HF1|EIF3K_ORYSJ	****	Eukaryotic translation initiation factor 3 subunit K	IPR009374 (Eukaryotic translation initiation factor 3 subunit K), IPR016024 (Armadillo-type fold)	GO:0003743 (translation initiation factor activity), GO:0005488 (binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf06183g07014.1	sp|Q46GA8|RL5_METBF	***-	50S ribosomal protein L5	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf17535g00001.1			Unknown protein		
Niben101Scf00116g02013.1	sp|A0LV00|MIAB_ACIC1	*-*-	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	IPR007197 (Radical SAM), IPR023970 (Methylthiotransferase/radical SAM-type protein)	GO:0003824 (catalytic activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf00343g09002.1	AT5G44440.1	****	FAD-binding Berberine family protein LENGTH=533	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00811g08004.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf04505g06005.1	gb|EQB56868.1|	***-	NADH:ubiquinone oxidoreductase 11.6kD subunit [Colletotrichum gloeosporioides Cg-14]	IPR019329 (NADH:ubiquinone oxidoreductase, ESSS subunit)	
Niben101Scf01634g02013.1	sp|Q9SF23|FOLB1_ARATH	*-**	Dihydroneopterin aldolase	IPR006156 (Dihydroneopterin aldolase), IPR006157 (Dihydroneopterin aldolase/epimerase domain), IPR007720 (N-acetylglucosaminyl transferase component)	GO:0004150 (dihydroneopterin aldolase activity), GO:0006506 (GPI anchor biosynthetic process), GO:0006760 (folic acid-containing compound metabolic process), GO:0016021 (integral component of membrane), GO:0017176 (phosphatidylinositol N-acetylglucosaminyltransferase activity)
Niben101Scf07040g01003.1			Unknown protein	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Ctg14936g00003.1	gb|KEH43835.1|	***-	PPR superfamily protein [Medicago truncatula]	IPR029159 (Casein Kinase 2 substrate)	
Niben101Scf10767g00003.1	sp|A9WFA3|CH602_CHLAA	--*-	60 kDa chaperonin 2		
Niben101Scf03435g02019.1	AT3G44970.1	***-	Cytochrome P450 superfamily protein LENGTH=479	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02920g00009.1			Unknown protein		
Niben101Scf03722g00008.1	AT2G37420.1	****	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf19277g00010.1	AT5G60800.2	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=302	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf02517g12009.1	AT3G59410.2	****	protein kinase family protein LENGTH=1265	IPR011009 (Protein kinase-like domain), IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04416g00008.1	ref|XP_003589994.1|	--*-	LysM domain-containing receptor-like kinase [Medicago truncatula]		
Niben101Scf01852g03001.1	sp|Q9SHK2|PPR17_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01020g06012.1	emb|CDY17749.1|	*-*-	BnaC08g21570D [Brassica napus]	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf04624g00032.1	AT2G44830.1	*-**	Protein kinase superfamily protein LENGTH=765	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06847g02001.1	AT1G32740.1	****	SBP (S-ribonuclease binding protein) family protein LENGTH=312	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017066 (S-ribonuclease binding protein, SBP1, pollen)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02332g00008.1			Unknown protein		
Niben101Scf14022g03002.1	sp|P94072|GL33_ARATH	***-	Germin-like protein subfamily 3 member 3	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf00168g03002.1	gb|KEH28697.1|	*-*-	lactoylglutathione lyase/glyoxalase I family protein [Medicago truncatula]	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf01375g09047.1	sp|Q54JR2|ABCC3_DICDI	***-	ABC transporter C family member 3	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf05301g01003.1	sp|Q6AWW5|Y5262_ARATH	*-*-	Ankyrin repeat-containing protein	IPR000535 (MSP domain), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf04113g12002.1	AT1G19440.1	***-	3-ketoacyl-CoA synthase 4 LENGTH=516	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01175g03010.1	sp|O23144|PPI1_ARATH	****	Proton pump-interactor 1	IPR029669 (Proton pump-interactor)	GO:0005783 (endoplasmic reticulum), GO:0005886 (plasma membrane), GO:0010155 (regulation of proton transport)
Niben101Scf07767g02006.1	sp|Q59205|CPXU_BRADU	--*-	Cytochrome P450 BJ-4	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04409g00010.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05357g00010.1	sp|Q9SRL8|LBD21_ARATH	***-	LOB domain-containing protein 21	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf02790g01011.1	sp|Q40468|IF415_TOBAC	*-*-	Eukaryotic initiation factor 4A-15		
Niben101Scf04820g02010.1	AT1G52770.1	***-	Phototropic-responsive NPH3 family protein LENGTH=454	IPR027356 (NPH3 domain)	
Niben101Scf10635g02001.1	AT2G01680.1	***-	Ankyrin repeat family protein LENGTH=532	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf01502g02001.1	ref|WP_032864401.1|	*-*-	peptide synthetase, partial [Bacillus amyloliquefaciens]	IPR000873 (AMP-dependent synthetase/ligase), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00349g01014.1	sp|Q19QU3|ZRAB2_PIG	--**	Zinc finger Ran-binding domain-containing protein 2	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf03088g03002.1			Unknown protein		
Niben101Scf07086g00002.1	gb|AAW30276.1|	*-*-	cytochrome c biogenesis ccmF [Liriodendron tulipifera]		
Niben101Scf09517g01009.1	sp|Q9M886|LBD41_ARATH	***-	LOB domain-containing protein 41	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf11037g02001.1	sp|Q8W4M7|ERCC2_ARATH	****	DNA repair helicase UVH6	IPR013020 (DNA helicase (DNA repair), Rad3 type), IPR014013 (Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0004003 (ATP-dependent DNA helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006139 (nucleobase-containing compound metabolic process), GO:0006289 (nucleotide-excision repair), GO:0008026 (ATP-dependent helicase activity), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf09192g03007.1	AT3G24040.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=417	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf00160g09014.1	sp|A0R5C5|GALE_MYCS2	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005888 (dTDP-glucose 4,6-dehydratase), IPR029903 (RmlD-like substrate binding domain)	GO:0003824 (catalytic activity), GO:0008460 (dTDP-glucose 4,6-dehydratase activity), GO:0009225 (nucleotide-sugar metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf19517g00004.1	AT1G60140.1	****	trehalose phosphate synthase LENGTH=861	IPR001830 (Glycosyl transferase, family 20), IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf08390g07004.1	AT3G17860.1	***-	jasmonate-zim-domain protein 3 LENGTH=352	IPR010399 (Tify), IPR018467 (CO/COL/TOC1, conserved site)	
Niben101Scf03414g01004.1	sp|P48621|FAD3C_SOYBN	*-*-	Omega-3 fatty acid desaturase, chloroplastic	IPR005804 (Fatty acid desaturase, type 1), IPR021863 (Protein of unknown function DUF3474)	GO:0006629 (lipid metabolic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0055114 (oxidation-reduction process)
Niben101Scf01395g04001.1	ref|WP_032541751.1|	*-**	DNA primase [Bacteroides fragilis]	IPR006171 (Toprim domain), IPR027032 (Twinkle-like protein)	GO:0003697 (single-stranded DNA binding), GO:0043139 (5'-3' DNA helicase activity)
Niben101Scf03468g03025.1	sp|Q0WL80|UGGG_ARATH	****	UDP-glucose:glycoprotein glucosyltransferase	IPR002495 (Glycosyl transferase, family 8), IPR009448 (UDP-glucose:Glycoprotein Glucosyltransferase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0003980 (UDP-glucose:glycoprotein glucosyltransferase activity), GO:0006486 (protein glycosylation), GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf00493g00008.1	sp|B7VHH1|BIOH_VIBTL	-**-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02124g01017.1	ref|NP_200590.1|	*-**	zinc ion binding protein [Arabidopsis thaliana] dbj|BAB08852.1| unnamed protein product [Arabidopsis thaliana] gb|AED96956.1| zinc ion binding protein [Arabidopsis thaliana]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09387g05005.1	sp|Q9FWX2|NAC7_ARATH	***-	NAC domain-containing protein 7	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06423g03023.1	sp|Q8GUH1|PUB33_ARATH	*-*-	U-box domain-containing protein 33		
Niben101Scf00165g05007.1	sp|Q9SJ56|BLH1_ARATH	*-*-	BEL1-like homeodomain protein 1	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00621g10003.1	sp|Q3E9D5|DCAM4_ARATH	****	S-adenosylmethionine decarboxylase proenzyme 4	IPR001985 (S-adenosylmethionine decarboxylase), IPR016067 (S-adenosylmethionine decarboxylase, core), IPR018167 (S-adenosylmethionine decarboxylase subgroup)	GO:0004014 (adenosylmethionine decarboxylase activity), GO:0006597 (spermine biosynthetic process), GO:0008295 (spermidine biosynthetic process)
Niben101Scf24333g00003.1	AT1G80510.1	***-	Transmembrane amino acid transporter family protein LENGTH=489	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf05552g07002.1	ref|NP_568767.2|	****	iron ion binding / oxidoreductase [Arabidopsis thaliana] dbj|BAA97223.1| unnamed protein product [Arabidopsis thaliana] gb|AED96141.1| iron ion binding / oxidoreductase [Arabidopsis thaliana]	IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf37733g00002.1	sp|A1KL82|CYSH_MYCBP	*-**	Phosphoadenosine phosphosulfate reductase	IPR004508 (Thioredoxin-independent 5'-adenylylsulphate reductase), IPR012336 (Thioredoxin-like fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0019419 (sulfate reduction), GO:0045454 (cell redox homeostasis), GO:0055114 (oxidation-reduction process)
Niben101Scf03121g03003.1	emb|CDY69694.1|	*-*-	BnaAnng31230D [Brassica napus]		
Niben101Scf02911g05015.1	sp|Q41916|CYT5_ARATH	****	Cysteine proteinase inhibitor 5	IPR000010 (Proteinase inhibitor I25, cystatin), IPR027214 (Cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf04813g02016.1	sp|Q54NP8|KIF4_DICDI	*-**	Kinesin-related protein 4	IPR001752 (Kinesin motor domain), IPR016024 (Armadillo-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf12321g01012.1	sp|Q6NVS2|ERGI3_XENTR	***-	Endoplasmic reticulum-Golgi intermediate compartment protein 3	IPR012936 (Endoplasmic reticulum vesicle transporter, C-terminal)	
Niben101Scf03895g01016.1	ref|XP_007011733.1|	*-*-	Nucleic acid binding protein, putative isoform 1 [Theobroma cacao] ref|XP_007011734.1| Nucleic acid binding protein, putative isoform 1 [Theobroma cacao] gb|EOY29352.1| Nucleic acid binding protein, putative isoform 1 [Theobroma cacao] gb|EOY29353.1| Nucleic acid binding protein, putative isoform 1 [Theobroma cacao]		
Niben101Scf01236g02005.1	sp|Q9SXD8|PPR90_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf15437g02006.1	AT5G48150.1	***-	GRAS family transcription factor LENGTH=490	IPR005202 (Transcription factor GRAS)	
Niben101Scf09610g00017.1	sp|Q8LGG8|USPAL_ARATH	*-**	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf00509g00009.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf00180g06008.1	AT1G61150.1	*-*-	LisH and RanBPM domains containing protein LENGTH=243	IPR006594 (LisH dimerisation motif)	GO:0005515 (protein binding)
Niben101Scf00135g03010.1	AT5G18020.1	***-	SAUR-like auxin-responsive protein family LENGTH=91	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00780g03004.1	sp|Q9LNU4|PSD3A_ARATH	****	26S proteasome non-ATPase regulatory subunit 3 homolog A	IPR000717 (Proteasome component (PCI) domain), IPR013143 (PCI/PINT associated module), IPR013586 (26S proteasome regulatory subunit, C-terminal)	GO:0000502 (proteasome complex), GO:0005515 (protein binding), GO:0030234 (enzyme regulator activity), GO:0042176 (regulation of protein catabolic process)
Niben101Scf03362g05003.1	sp|Q949Z1|PGLR4_ARATH	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf10556g00029.1	emb|CDX99019.1|	*-*-	BnaC09g48160D [Brassica napus]		
Niben101Scf00985g06002.1	sp|O49564|CRK27_ARATH	*-**	Cysteine-rich receptor-like protein kinase 27	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07115g00003.1	sp|O65378|ACCO3_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase 3	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf13185g00010.1	sp|B5WWZ8|FAO1_LOTJA	*-**	Long-chain-alcohol oxidase FAO1	IPR012400 (Alcohol dehydrogenase, long-chain fatty)	GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0046577 (long-chain-alcohol oxidase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00996g02009.1	sp|Q38857|XTH22_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR008264 (Beta-glucanase), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf02160g06026.1	sp|P23468|PTPRD_HUMAN	--*-	Receptor-type tyrosine-protein phosphatase delta		
Niben101Scf00124g00014.1	AT1G49050.1	*-*-	Eukaryotic aspartyl protease family protein LENGTH=583		
Niben101Scf00592g00015.1	sp|Q6Z2G9|TLP5_ORYSJ	***-	Tubby-like F-box protein 5	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf11178g01003.1	sp|P31562|ACCD_CUSRE	****	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	IPR000438 (Acetyl-CoA carboxylase carboxyl transferase, beta subunit), IPR029045 (ClpP/crotonase-like domain)	GO:0003989 (acetyl-CoA carboxylase activity), GO:0006633 (fatty acid biosynthetic process), GO:0009317 (acetyl-CoA carboxylase complex), GO:0016874 (ligase activity)
Niben101Scf02139g02002.1	sp|Q502B0|RM41_DANRE	***-	39S ribosomal protein L41, mitochondrial	IPR019189 (Ribosomal protein L27/L41, mitochondrial)	
Niben101Scf01685g12005.1	sp|Q8LDW9|XTH9_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 9	IPR008264 (Beta-glucanase), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf00460g03016.1	sp|Q56NI9|ESCO2_HUMAN	*-*-	N-acetyltransferase ESCO2	IPR028005 (N-acetyltransferase ESCO, zinc-finger), IPR028009 (N-acetyltransferase ESCO, acetyl-transferase domain)	
Niben101Scf12515g00030.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00338g06005.1	sp|Q97GI6|DAPH_CLOAB	--*-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	IPR011004 (Trimeric LpxA-like)	
Niben101Scf05118g07002.1	emb|CDX95671.1|	***-	BnaC03g25520D [Brassica napus]		
Niben101Scf01740g03002.1	sp|Q6P1E7|PRIPO_MOUSE	****	DNA-directed primase/polymerase protein	IPR002755 (DNA primase, small subunit), IPR004340 (DNA primase, UL52/UL70 type, Herpesviridae)	GO:0003896 (DNA primase activity), GO:0006260 (DNA replication), GO:0006269 (DNA replication, synthesis of RNA primer)
Niben101Scf02610g01003.1	sp|Q9SSK9|MLP28_ARATH	***-	MLP-like protein 28	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf09822g00004.1	AT2G43840.2	*-*-	UDP-glycosyltransferase 74 F1 LENGTH=449	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04638g00012.1	ref|XP_002524663.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37682.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01110g06005.1	sp|Q15560|TCEA2_HUMAN	--**	Transcription elongation factor A protein 2	IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf05183g01004.1	sp|Q99LZ3|SLD5_MOUSE	***-	DNA replication complex GINS protein SLD5	IPR021151 (GINS complex)	
Niben101Scf15953g00007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00069g04008.1			Unknown protein		
Niben101Scf00959g00002.1	ref|NP_191672.1|	*-**	alpha-1,4-galacturon [Arabidopsis thaliana] emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gb|AHL38722.1| glycosyltransferase, partial [Arabidopsis thaliana]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf13748g00017.1	AT1G03010.1	***-	Phototropic-responsive NPH3 family protein LENGTH=634	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf04690g02035.1			Unknown protein		
Niben101Scf03114g07015.1	emb|CDX89403.1|	***-	BnaA01g14900D [Brassica napus]		
Niben101Scf00132g03011.1	sp|Q0WVN5|CSLG3_ARATH	****	Cellulose synthase-like protein G3	IPR005150 (Cellulose synthase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf11774g01002.1	ref|XP_002869579.1|	****	rab GTPase activator [Arabidopsis lyrata subsp. lyrata] gb|EFH45838.1| rab GTPase activator [Arabidopsis lyrata subsp. lyrata]	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf04627g05001.1	sp|O65399|E131_ARATH	***-	Glucan endo-1,3-beta-glucosidase 1	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01427g02008.1			Unknown protein		
Niben101Scf03202g05005.1	sp|P0CW07|DNAJ_METMA	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR012336 (Thioredoxin-like fold)	
Niben101Scf00854g07058.1			Unknown protein		
Niben101Scf00520g13006.1	sp|K4L9M2|STS1_THAGA	--**	Sesquiterpene synthase 1	IPR001906 (Terpene synthase, N-terminal domain)	GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf02507g04021.1	sp|B9M9Q4|KDSB_GEODF	****	3-deoxy-manno-octulosonate cytidylyltransferase	IPR003329 (Acylneuraminate cytidylyltransferase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005737 (cytoplasm), GO:0008690 (3-deoxy-manno-octulosonate cytidylyltransferase activity), GO:0009103 (lipopolysaccharide biosynthetic process)
Niben101Scf04610g07008.1	sp|Q8H8N3|TYW1_ORYSJ	*-*-	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase	IPR013917 (tRNA wybutosine-synthesis)	
Niben101Scf02562g04004.1	sp|Q5RFE9|LRC40_PONAB	*-*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf01517g01001.1			Unknown protein		
Niben101Scf07182g03013.1	sp|Q9MA49|JAL2_ARATH	--*-	Jacalin-related lectin 2	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf03029g00004.1	sp|Q9S740|AGP19_ARATH	--*-	Lysine-rich arabinogalactan protein 19	IPR003882 (Pistil-specific extensin-like protein)	GO:0005199 (structural constituent of cell wall)
Niben101Scf01623g02016.1	sp|O54408|RELA_BACSU	***-	GTP pyrophosphokinase	IPR002912 (ACT domain), IPR003607 (HD/PDEase domain), IPR007685 (RelA/SpoT), IPR012675 (Beta-grasp domain)	GO:0008152 (metabolic process), GO:0015969 (guanosine tetraphosphate metabolic process), GO:0016597 (amino acid binding)
Niben101Scf04432g00004.1	AT1G03390.1	****	HXXXD-type acyl-transferase family protein LENGTH=461	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00470g03016.1			Unknown protein		
Niben101Scf07345g00010.1			Unknown protein		
Niben101Scf03351g02003.1	sp|Q9Y222|DMTF1_HUMAN	*-**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02180g00022.1	sp|Q3EDF8|PPR28_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00854g04099.1	ref|XP_002519967.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF42415.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf18731g00012.1	sp|Q9SLD4|ZAT11_ARATH	--*-	Zinc finger protein ZAT11		
Niben101Scf06412g04014.1	AT2G47230.2	*-*-	DOMAIN OF UNKNOWN FUNCTION 724 6 LENGTH=709	IPR007930 (Protein of unknown function DUF724), IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf04249g01001.1	AT3G13460.1	***-	evolutionarily conserved C-terminal region 2 LENGTH=667	IPR007275 (YTH domain)	
Niben101Scf09510g02015.1	sp|Q9H816|DCR1B_HUMAN	*-*-	5' exonuclease Apollo	IPR001279 (Beta-lactamase-like)	
Niben101Scf09663g05001.1	ref|NP_001078070.1|	***-	protein TILLER ANGLE CONTROL 1 [Arabidopsis thaliana] gb|AEC10733.1| uncharacterized protein [Arabidopsis thaliana]		
Niben101Scf19043g00002.1	sp|Q5R8C8|ANR46_PONAB	--*-	Ankyrin repeat domain-containing protein 46	IPR011333 (BTB/POZ fold), IPR020683 (Ankyrin repeat-containing domain), IPR021094 (NPR1/NIM1-like, C-terminal), IPR024228 (Domain of unknown function DUF3420)	GO:0005515 (protein binding)
Niben101Scf10476g02003.1	sp|A5GI58|ACP_SYNPW	***-	Acyl carrier protein	IPR003231 (Acyl carrier protein (ACP)), IPR009081 (Acyl carrier protein-like)	GO:0006633 (fatty acid biosynthetic process)
Niben101Scf04018g10002.1	AT5G57070.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=575	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Ctg09679g00001.1	sp|P58905|AMT11_SOLLC	****	Ammonium transporter 1 member 1	IPR001905 (Ammonium transporter), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf06279g01008.1	AT5G42670.1	***-	Agenet domain-containing protein LENGTH=294	IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Ctg11091g00003.1	sp|P24806|XTH24_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 24	IPR008264 (Beta-glucanase), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02379g03002.1	sp|Q02084|A33_PLEWA	--**	Zinc-binding protein A33	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf21165g00003.1	emb|CDY18986.1|	--*-	BnaC01g20820D [Brassica napus]		
Niben101Scf06819g04002.1			Unknown protein		
Niben101Scf01611g06002.1	sp|Q58DG6|FXL20_BOVIN	***-	F-box/LRR-repeat protein 20	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf11853g00001.1	sp|Q9LEZ3|BIM1_ARATH	***-	Transcription factor BIM1	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05576g00010.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf14310g00003.1	sp|Q8GXL7|GAT24_ARATH	*-**	GATA transcription factor 24	IPR010399 (Tify), IPR010402 (CCT domain), IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02525g04015.1	sp|Q9LZQ1|TBL6_ARATH	***-	Protein trichome birefringence-like 6	IPR026057 (PC-Esterase)	
Niben101Scf01316g02008.1	gb|AGT17598.1|	***-	xyloglucan-specific endoglucanase inhibitor 11 [Solanum tuberosum]	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02117g00006.1	sp|Q8L5Z1|GDL17_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006629 (lipid metabolic process), GO:0006950 (response to stress), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00573g02012.1	sp|Q9SLN5|MAP1A_ARATH	--*-	Methionine aminopeptidase 1A	IPR000994 (Peptidase M24, structural domain)	
Niben101Scf10200g00007.1	AT5G19010.1	****	mitogen-activated protein kinase 16 LENGTH=567	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00044g00024.1	sp|Q9M1V3|PP296_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01677g02004.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00149g09004.1	AT3G48710.1	*-*-	DEK domain-containing chromatin associated protein LENGTH=462	IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding)
Niben101Scf02569g00022.1	ATMG00090.1	*-**	structural constituent of ribosome;protein binding chrM:25482-28733 REVERSE LENGTH=556	IPR001351 (Ribosomal protein S3, C-terminal), IPR001516 (NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf02410g00001.1	emb|CAD40681.2|	--*-	OSJNBb0118P14.3 [Oryza sativa Japonica Group]		
Niben101Scf05615g03015.1			Unknown protein		
Niben101Scf08002g03016.1	gb|KEH21697.1|	*-*-	NLI interacting factor-like phosphatase [Medicago truncatula]	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding)
Niben101Scf01253g02001.1	sp|P0CR89|TIM22_CRYNB	--*-	Mitochondrial import inner membrane translocase subunit TIM22	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Scf07334g03004.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02527g01020.1	sp|Q01412|E13A_SOLLC	***-	Glucan endo-1,3-beta-glucosidase A	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04955g00003.1	gb|AES73335.2|	--*-	chromosome-associated kinesin KIF4A-like protein [Medicago truncatula]		
Niben101Scf00853g04007.1	sp|Q9SRW7|APK3_ARATH	****	Adenylyl-sulfate kinase 3	IPR002891 (Adenylylsulphate kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000103 (sulfate assimilation), GO:0004020 (adenylylsulfate kinase activity), GO:0005524 (ATP binding)
Niben101Scf02041g05003.1	ref|XP_002521723.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF40710.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf03595g00003.1	AT3G19960.2	****	myosin 1 LENGTH=1176	IPR000048 (IQ motif, EF-hand binding site), IPR027401 (Myosin-like IQ motif-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf05092g00007.1	sp|Q9LJQ9|CX171_ARATH	*-**	Cytochrome c oxidase copper chaperone 1	IPR007745 (Cytochrome c oxidase copper chaperone), IPR009069 (Cysteine alpha-hairpin motif superfamily)	GO:0005507 (copper ion binding), GO:0005758 (mitochondrial intermembrane space), GO:0006825 (copper ion transport), GO:0016531 (copper chaperone activity)
Niben101Scf03170g05006.1	AT3G24880.1	*-**	Helicase/SANT-associated, DNA binding protein LENGTH=1957	IPR009057 (Homeodomain-like), IPR014012 (Helicase/SANT-associated, DNA binding)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05822g05012.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf11774g01001.1	sp|Q22516|CHD3_CAEEL	*-**	Chromodomain-helicase-DNA-binding protein 3 homolog	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014905 (HIRAN domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf00507g00008.1	sp|Q5ZJL8|ABHDD_CHICK	*-*-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02369g03001.1			Unknown protein		
Niben101Scf06091g07022.1	sp|Q94AI7|TPL_ARATH	*-*-	Protein TOPLESS		
Niben101Scf20010g00003.1	AT1G10280.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=412	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf13523g00008.1	sp|Q93YN9|IPPK_ARATH	****	Inositol-pentakisphosphate 2-kinase	IPR009286 (Inositol-pentakisphosphate 2-kinase)	GO:0005524 (ATP binding), GO:0035299 (inositol pentakisphosphate 2-kinase activity)
Niben101Scf02404g02035.1	sp|Q9C7R6|PUB17_ARATH	***-	U-box domain-containing protein 17	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf01706g00026.1	AT1G64650.1	*-*-	Major facilitator superfamily protein LENGTH=462	IPR008509 (Molybdate-anion transporter MOT2), IPR020846 (Major facilitator superfamily domain)	GO:0015098 (molybdate ion transmembrane transporter activity), GO:0015689 (molybdate ion transport), GO:0016021 (integral component of membrane)
Niben101Scf13666g00004.1	AT3G15750.1	*-*-	Essential protein Yae1, N-terminal LENGTH=199	IPR019191 (Essential protein Yae1, N-terminal)	
Niben101Scf15657g01011.1	AT1G05990.1	****	EF hand calcium-binding protein family LENGTH=150	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00058g06004.1	sp|Q3E9D5|DCAM4_ARATH	****	S-adenosylmethionine decarboxylase proenzyme 4	IPR001985 (S-adenosylmethionine decarboxylase), IPR016067 (S-adenosylmethionine decarboxylase, core), IPR018167 (S-adenosylmethionine decarboxylase subgroup)	GO:0004014 (adenosylmethionine decarboxylase activity), GO:0006597 (spermine biosynthetic process), GO:0008295 (spermidine biosynthetic process)
Niben101Scf06222g01021.1	sp|O65418|APC4_ARATH	*-*-	Anaphase-promoting complex subunit 4		
Niben101Scf00163g20015.1	sp|Q43804|OLEO1_PRUDU	***-	Oleosin 1	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Ctg09495g00001.1	AT5G12460.1	*-*-	Protein of unknown function (DUF604) LENGTH=441	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf06106g01017.1	AT4G35000.1	*-**	ascorbate peroxidase 3 LENGTH=287	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg11479g00002.1	AT5G59480.1	*-*-	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=282	IPR023214 (HAD-like domain)	
Niben101Scf13802g01006.1			Unknown protein		
Niben101Scf04096g04009.1	sp|Q9LTJ8|MBD13_ARATH	*-**	Methyl-CpG-binding domain-containing protein 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf02698g01001.1	sp|A7HMM1|BIOF_FERNB	***-	8-amino-7-oxononanoate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0009058 (biosynthetic process), GO:0016740 (transferase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf13942g00026.1	ref|WP_032852534.1|	***-	acetyl-CoA carboxylase [Bacteroides sp. 3_1_23]	IPR007934 (Alpha-L-arabinofuranosidase B, arabinose-binding domain), IPR012878 (Protein of unknown function DUF1680)	GO:0046373 (L-arabinose metabolic process), GO:0046556 (alpha-L-arabinofuranosidase activity)
Niben101Scf06221g04007.1	sp|A2AJ76|HMCN2_MOUSE	--*-	Hemicentin-2		
Niben101Scf00955g04005.1	sp|Q9LKW9|NHX7_ARATH	***-	Sodium/hydrogen exchanger 7	IPR006153 (Cation/H+ exchanger), IPR014710 (RmlC-like jelly roll fold), IPR018422 (Cation/H+ exchanger, CPA1 family)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf08206g02027.1	emb|CDY47084.1|	***-	BnaA03g12140D [Brassica napus]		
Niben101Scf07245g00001.1	ref|XP_002520880.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF41589.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02389g00013.1	gb|KEH24089.1|	*-*-	sulfite exporter TauE/SafE family protein [Medicago truncatula]	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf08443g01014.1	gb|ACE79422.1|	--*-	NBS-coding resistance gene analog [Nicotiana tabacum]		
Niben101Scf01346g00001.1	AT4G11400.1	*-*-	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=573		
Niben101Scf11037g02003.1	sp|Q13490|BIRC2_HUMAN	--*-	Baculoviral IAP repeat-containing protein 2		
Niben101Scf03985g04027.1	AT4G23820.1	***-	Pectin lyase-like superfamily protein LENGTH=444	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06008g01013.1	ref|YP_005090400.1|	*-*-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf01531g00004.1	sp|Q94JW8|SPL6_ARATH	*-**	Squamosa promoter-binding-like protein 6	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf02540g00009.1	sp|Q9ZQ19|RFA2A_ARATH	****	Replication protein A 32 kDa subunit A	IPR014646 (Replication factor A protein 2)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0006310 (DNA recombination)
Niben101Scf01782g07016.1	sp|Q9LS23|ALMTD_ARATH	****	Aluminum-activated malate transporter 13	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf01775g00008.1	AT1G57600.1	***-	MBOAT (membrane bound O-acyl transferase) family protein LENGTH=533	IPR004299 (Membrane bound O-acyl transferase, MBOAT)	
Niben101Scf04709g00019.1			Unknown protein		
Niben101Scf07141g00012.1	ref|NP_001049319.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf11424g02011.1	gb|AES72538.2|	****	RNA-binding protein with multiple splicing protein [Medicago truncatula]	IPR024888 (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'')	GO:0000398 (mRNA splicing, via spliceosome), GO:0017069 (snRNA binding)
Niben101Scf04741g02009.1	AT1G53510.1	****	mitogen-activated protein kinase 18 LENGTH=615	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg07888g00003.1	sp|Q0WPW4|ACCO5_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase 5	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01116g01001.1	ref|WP_027659785.1|	--*-	hypoxanthine phosphoribosyltransferase [Salinispora pacifica]	IPR029057 (Phosphoribosyltransferase-like)	
Niben101Scf04319g00001.1	sp|Q9C519|WRKY6_ARATH	****	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg16284g00001.1	emb|CDY52118.1|	*-*-	BnaA10g29470D [Brassica napus]		
Niben101Scf08876g00004.1	sp|P35614|ERF1Z_ARATH	****	Eukaryotic peptide chain release factor subunit 1-3	IPR004403 (Peptide chain release factor eRF1/aRF1), IPR029064 (50S ribosomal protein L30e-like)	GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf00378g05001.1	AT2G48140.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=200	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00063g00016.1	sp|Q9BY12|SCAPE_HUMAN	*-*-	S phase cyclin A-associated protein in the endoplasmic reticulum		
Niben101Scf03468g03026.1	sp|A1R6Z3|CARB_ARTAT	*-*-	Carbamoyl-phosphate synthase large chain	IPR016185 (Pre-ATP-grasp domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01166g14001.1	sp|Q9ZSA3|CDPKM_ARATH	*-**	Calcium-dependent protein kinase 22	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02008g00020.1	sp|P53471|ACT2_SCHMA	*-*-	Actin-2	IPR004000 (Actin family)	
Niben101Scf03621g00002.1	gb|AAU95273.1|	*-*-	R1 [Solanum tuberosum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf07631g00009.1	sp|A2X6X1|CDKG1_ORYSI	*-**	Cyclin-dependent kinase G-1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05231g00008.1	AT4G01440.1	***-	nodulin MtN21 /EamA-like transporter family protein LENGTH=365	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	
Niben101Scf11953g03005.1	sp|P78968|PPZ_SCHPO	***-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf06148g00002.1	gb|KEH21350.1|	*-*-	E3 ubiquitin-protein ligase LIN-like protein, putative [Medicago truncatula]		
Niben101Scf07825g06017.1	AT5G04590.1	****	sulfite reductase LENGTH=642	IPR011787 (Sulphite reductase, ferredoxin dependent)	GO:0016491 (oxidoreductase activity), GO:0020037 (heme binding), GO:0050311 (sulfite reductase (ferredoxin) activity), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02819g02002.1	sp|Q9LVZ7|PDCT1_ARATH	***-	Phosphatidylcholine:diacylglycerol cholinephosphotransferase 1		
Niben101Scf00991g08003.1	sp|Q9FJX5|BT4_ARATH	***-	BTB/POZ and TAZ domain-containing protein 4	IPR000197 (Zinc finger, TAZ-type), IPR011333 (BTB/POZ fold)	GO:0003712 (transcription cofactor activity), GO:0004402 (histone acetyltransferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf03061g00007.1	AT2G34410.1	*-*-	O-acetyltransferase family protein LENGTH=540	IPR012419 (Cas1p 10 TM acyl transferase domain)	
Niben101Scf07168g02011.1	gb|EWG38178.1|	***-	pre-mRNA-splicing factor prp46 [Fusarium verticillioides 7600]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf08415g01004.1	AT5G52290.1	***-	shortage in chiasmata 1 LENGTH=1594		
Niben101Scf06280g06008.1	sp|Q9FL16|PER63_ARATH	****	Peroxidase 63	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02508g06005.1	gb|AAD24658.1|	--*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf02971g05016.1	sp|P27489|CB23_SOLLC	***-	Chlorophyll a-b binding protein 13, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf09397g00001.1	gb|KEH39902.1|	***-	Smr (small MutS-related) domain protein [Medicago truncatula]	IPR013899 (Domain of unknown function DUF1771)	
Niben101Scf04505g06003.1	gb|EQB56868.1|	*-*-	NADH:ubiquinone oxidoreductase 11.6kD subunit [Colletotrichum gloeosporioides Cg-14]	IPR019329 (NADH:ubiquinone oxidoreductase, ESSS subunit)	
Niben101Scf09387g03018.1	sp|Q95LY5|TTC12_MACFA	*-*-	Tetratricopeptide repeat protein 12	IPR006636 (Heat shock chaperonin-binding), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02755g01001.1	AT5G49700.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=276	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf03515g00087.1	gb|AIF76113.1|	****	cytochrome c biogenesis B, partial (mitochondrion) [Halodule pinifolia]	IPR003544 (Cytochrome c-type biogenesis protein CcmB)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf27692g00001.1	AT1G11260.1	****	sugar transporter 1 LENGTH=522	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf12483g02007.1	sp|Q9SR40|LAC7_ARATH	***-	Laccase-7	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02877g05009.1	AT1G06470.1	***-	Nucleotide/sugar transporter family protein LENGTH=414	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf06344g01021.1	sp|F4HT49|PABP1_ARATH	****	Polyadenylate-binding protein 1	IPR006515 (Polyadenylate binding protein, human types 1, 2, 3, 4), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf01895g00016.1	ref|XP_003638735.1|	***-	Membrane protein, putative [Medicago truncatula]		
Niben101Scf07510g00015.1	AT4G27350.1	***-	Protein of unknown function (DUF1223) LENGTH=278	IPR010634 (Protein of unknown function DUF1223), IPR012336 (Thioredoxin-like fold)	
Niben101Scf05005g07007.1	sp|Q864F8|MSHR_VARVR	--*-	Melanocyte-stimulating hormone receptor		
Niben101Scf01768g02028.1	sp|Q8H0U4|TNPO1_ARATH	***-	Transportin-1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf04316g10009.1	sp|Q7ZVC4|CHM4B_DANRE	*-*-	Charged multivesicular body protein 4b	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf02566g02009.1	AT4G32870.1	***-	Polyketide cyclase/dehydrase and lipid transport superfamily protein LENGTH=157	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf05108g00009.1	AT3G07620.1	*-*-	Exostosin family protein LENGTH=470		
Niben101Scf00811g07017.1	ref|XP_003605540.1|	****	Ran-binding protein [Medicago truncatula] gb|AES87737.1| SPla/RYanodine receptor (SPRY) domain protein [Medicago truncatula]	IPR001870 (B30.2/SPRY domain), IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR013144 (CRA domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024964 (CTLH/CRA C-terminal to LisH motif domain), IPR027713 (Protein Ssh4 like)	GO:0005515 (protein binding)
Niben101Scf09149g01011.1	sp|Q8LG89|BABL_ARATH	***-	Basic blue protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf02762g00002.1			Unknown protein		
Niben101Scf01001g07004.1	ref|YP_009045815.1|	--*-	orf221 (mitochondrion) [Batis maritima] gb|AIC83418.1| orf221 (mitochondrion) [Batis maritima]		
Niben101Scf06551g00018.1	sp|A2Z9Q7|MAD56_ORYSI	*-*-	MADS-box transcription factor 56	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf04042g00013.1	AT4G36590.1	***-	MADS-box transcription factor family protein LENGTH=248	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf39312g00001.1	sp|Q9FZH5|MPI2_ARATH	*-**	Mannose-6-phosphate isomerase 2	IPR001250 (Mannose-6-phosphate isomerase, type I)	GO:0004476 (mannose-6-phosphate isomerase activity), GO:0005975 (carbohydrate metabolic process), GO:0008270 (zinc ion binding), GO:0009298 (GDP-mannose biosynthetic process)
Niben101Scf04883g00005.1			Unknown protein		
Niben101Scf13950g00005.1	gb|ADG60254.1|	--*-	stigma/style cell cycle inhibitor 1 [Nicotiana tabacum]		
Niben101Scf01789g02020.1	AT2G22650.1	****	FAD-dependent oxidoreductase family protein LENGTH=420	IPR006076 (FAD dependent oxidoreductase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09355g01010.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01926g00001.1	sp|P87027|SPG1_SCHPO	-**-	Septum-promoting GTP-binding protein 1	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf04107g01014.1	AT5G63040.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=366		
Niben101Scf02269g00006.1	sp|Q9FFF5|ALFL1_ARATH	***-	PHD finger protein ALFIN-LIKE 1	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR021998 (Alfin)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0042393 (histone binding)
Niben101Scf03852g00028.1	sp|O23547|EXLB1_ARATH	***-	Expansin-like B1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region)
Niben101Scf02502g04001.1	sp|Q8GTL5|METK_CARPA	****	S-adenosylmethionine synthase	IPR002133 (S-adenosylmethionine synthetase)	GO:0004478 (methionine adenosyltransferase activity), GO:0005524 (ATP binding), GO:0006556 (S-adenosylmethionine biosynthetic process)
Niben101Scf02461g02002.1	AT1G18160.1	*-**	Protein kinase superfamily protein LENGTH=992	IPR000270 (Phox/Bem1p), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06094g00010.1	sp|Q6EP49|MAD27_ORYSJ	*-*-	MADS-box transcription factor 27	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03141g05004.1	AT4G12570.1	*-**	ubiquitin protein ligase 5 LENGTH=873	IPR000569 (HECT)	GO:0004842 (ubiquitin-protein transferase activity)
Niben101Scf11334g03005.1	sp|Q84K00|NAC78_ARATH	--*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	
Niben101Scf01353g01001.1	ref|XP_002515278.1|	--*-	DELLA protein RGL2, putative [Ricinus communis] gb|EEF47262.1| DELLA protein RGL2, putative [Ricinus communis]		
Niben101Scf01221g06001.1	emb|CDY18244.1|	***-	BnaC05g02670D [Brassica napus]		
Niben101Scf01701g10015.1	sp|Q0WN60|PPR48_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03064g02024.1	dbj|BAM36190.1|	*-*-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf09668g00007.1	ref|XP_007048379.1|	--*-	Coiled-coil domain-containing protein 18, putative isoform 1 [Theobroma cacao] gb|EOX92536.1| Coiled-coil domain-containing protein 18, putative isoform 1 [Theobroma cacao]		
Niben101Scf03129g07010.1	sp|Q42920|PME_MEDSA	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf06848g08009.1	sp|Q6CGE1|PPME1_YARLI	*-*-	Protein phosphatase methylesterase 1	IPR016812 (Protein phosphatase methylesterase, eukaryotic), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006482 (protein demethylation), GO:0052689 (carboxylic ester hydrolase activity)
Niben101Scf03239g05013.1	ref|XP_007040372.1|	***-	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao] gb|EOY24873.1| Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao]	IPR004864 (Late embryogenesis abundant protein, LEA-14), IPR013783 (Immunoglobulin-like fold)	
Niben101Scf00438g01014.1	sp|P20965|PABPA_XENLA	*-**	Polyadenylate-binding protein 1-A	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR012921 (Spen paralogue and orthologue SPOC, C-terminal)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf09321g02007.1	ref|XP_007022019.1|	***-	Gb:AAD10662.1, putative isoform 5 [Theobroma cacao] gb|EOY13544.1| Gb:AAD10662.1, putative isoform 5 [Theobroma cacao]		
Niben101Scf05848g00001.1	sp|Q9LNT9|ASK4_ARATH	***-	SKP1-like protein 4	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf08141g01011.1	sp|Q8VYM0|ERF93_ARATH	*-**	Ethylene-responsive transcription factor 15	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01534g04008.1	ref|NP_001233978.1|	*-*-	extensin-like protein Dif54 precursor [Solanum lycopersicum] emb|CAA67814.1| extensin-like protein Dif54 [Solanum lycopersicum]		
Niben101Scf03361g00004.1	AT3G21690.1	*-*-	MATE efflux family protein LENGTH=506		
Niben101Scf00167g00037.1	gb|KEH43864.1|	***-	heat shock 22 kDa protein [Medicago truncatula]		
Niben101Scf01804g00076.1	sp|A7NPD6|NUON2_ROSCS	--*-	NADH-quinone oxidoreductase subunit N 2	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf00288g05004.1	sp|Q56YT0|LAC3_ARATH	***-	Laccase-3	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf38085g00003.1	sp|Q9WTL2|RAB25_MOUSE	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf05079g00013.1	sp|Q93ZB9|FACR3_ARATH	****	Fatty acyl-CoA reductase 3	IPR016040 (NAD(P)-binding domain), IPR026055 (Fatty acyl-CoA reductase)	GO:0080019 (fatty-acyl-CoA reductase (alcohol-forming) activity)
Niben101Ctg13801g00001.1	gb|AES71883.2|	--*-	Lipid transfer protein [Medicago truncatula]	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Ctg15904g00001.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01501g01001.1	AT3G49290.1	***-	ABL interactor-like protein 2 LENGTH=312		
Niben101Scf18639g00022.1	sp|B5XPC8|URK_KLEP3	*-**	Uridine kinase	IPR000764 (Uridine kinase like), IPR023577 (CYTH-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016301 (kinase activity)
Niben101Scf01334g04007.1	sp|O42877|FCF2_SCHPO	***-	rRNA-processing protein fcf2	IPR014810 (Fcf2 pre-rRNA processing)	
Niben101Scf14374g00009.1	sp|Q2LVL0|MSBA_SYNAS	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf05961g01010.1	sp|O50064|FIMB2_ARATH	***-	Fimbrin-2	IPR001715 (Calponin homology domain)	GO:0005515 (protein binding)
Niben101Scf00571g04012.1	sp|P93005|PP181_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07531g03004.1			Unknown protein		
Niben101Scf01514g04014.1	sp|O48965|IDI2_CAMAC	*-**	Isopentenyl-diphosphate Delta-isomerase II	IPR011876 (Isopentenyl-diphosphate delta-isomerase, type 1), IPR015797 (NUDIX hydrolase domain-like)	GO:0004452 (isopentenyl-diphosphate delta-isomerase activity), GO:0008299 (isoprenoid biosynthetic process), GO:0016787 (hydrolase activity)
Niben101Scf01154g11006.1			Unknown protein		
Niben101Scf01518g03001.1	ref|NP_001046162.1|	*-*-	product [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf02995g01005.1	sp|P42739|UBIQP_ACEPE	*-*-	Polyubiquitin	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf06752g00003.1	AT5G12300.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=374	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00438g02030.1	sp|Q2G5N7|ATPA_NOVAD	*-**	ATP synthase subunit alpha	IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf09242g02005.1			Unknown protein		
Niben101Scf02237g07010.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf03194g01002.1	AT5G62550.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43; Bacteria - 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses - 55; Other Eukaryotes - 5075 (source: NCBI BLink). LENGTH=487		
Niben101Scf06105g01010.1			Unknown protein		
Niben101Scf09811g02007.1	ref|NP_001042568.2|	--*-	[Oryza sativa Japonica Group] dbj|BAF04482.2| [Oryza sativa Japonica Group]		
Niben101Scf05151g01010.1	sp|Q9SK27|ENL1_ARATH	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf01013g07004.1	AT2G33420.1	***-	Protein of unknown function (DUF810) LENGTH=1039	IPR008528 (Protein of unknown function DUF810)	
Niben101Scf03332g01012.1			Unknown protein		
Niben101Scf06562g00009.1	sp|O84066|6PGD_CHLTR	--**	6-phosphogluconate dehydrogenase, decarboxylating	IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11480g00008.1	sp|Q9LMJ3|GDL1_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf06156g01002.1	AT4G36590.1	***-	MADS-box transcription factor family protein LENGTH=248	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf02145g07008.1	sp|O94903|PROSC_HUMAN	***-	Proline synthase co-transcribed bacterial homolog protein	IPR011078 (Uncharacterised protein family UPF0001), IPR029066 (PLP-binding barrel)	
Niben101Scf00885g09011.1	ref|NP_193381.1|	****	in [Arabidopsis thaliana] gb|AAO42160.1| putative membrane transporter [Arabidopsis thaliana] gb|AAO64127.1| putative membrane transporter [Arabidopsis thaliana] emb|CAJ00306.1| inositol transporter 4 [Arabidopsis thaliana] gb|AEE83759.1| inositol transporter 4 [Arabidopsis thaliana]	IPR005828 (General substrate transporter), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01521g06001.1	sp|Q9M342|WAKLP_ARATH	*-*-	Wall-associated receptor kinase-like 15	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf05692g07001.1	emb|CDY68401.1|	***-	BnaCnng58860D [Brassica napus]	IPR021924 (Protein of unknown function DUF3537)	
Niben101Scf14577g01001.1	sp|Q8LGH4|CUL4_ARATH	****	Cullin-4	IPR001373 (Cullin, N-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf00390g04002.1	sp|Q9LFT0|TBL19_ARATH	***-	Protein trichome birefringence-like 19	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf02873g00001.1	ref|XP_003636798.1|	****	2-aminoethanethiol dioxygenase [Medicago truncatula] gb|AFK37175.1| unknown [Medicago truncatula] gb|KEH36606.1| RmlC-type cupin [Medicago truncatula]	IPR012864 (Cysteamine dioxygenase), IPR014710 (RmlC-like jelly roll fold)	GO:0047800 (cysteamine dioxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06266g00009.1	AT3G47930.1	****	L-galactono-1,4-lactone dehydrogenase LENGTH=610	IPR007173 (D-arabinono-1,4-lactone oxidase), IPR010029 (Galactonolactone dehydrogenase), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0003885 (D-arabinono-1,4-lactone oxidase activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0016633 (galactonolactone dehydrogenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05139g00002.1	emb|CDX80520.1|	*-*-	BnaC07g29240D [Brassica napus]		
Niben101Scf16888g00015.1	AT2G21170.1	****	triosephosphate isomerase LENGTH=315	IPR000652 (Triosephosphate isomerase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004807 (triose-phosphate isomerase activity), GO:0006096 (glycolytic process), GO:0008152 (metabolic process)
Niben101Scf04033g03001.1	ref|WP_007607855.1|	****	carbon-nitrogen family hydrolase [Rhizobium sp. PDO1-076] gb|EHS49294.1| N-carbamoylputrescine amidase [Rhizobium sp. PDO1-076]	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf00199g03001.1	AT1G20080.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=537	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01792g00008.1			Unknown protein		
Niben101Scf03843g00005.1	AT3G26560.1	*-**	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf00931g00008.1	sp|Q6G1F8|DNAJ_BARQU	*-*-	Chaperone protein DnaJ	IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf05118g06012.1	emb|CDX74782.1|	***-	BnaA05g05280D [Brassica napus]		
Niben101Scf03376g05017.1	sp|A0L4Z2|DNAK_MAGSM	***-	Chaperone protein DnaK	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf00185g02010.1	sp|P35685|RL7A_ORYSJ	--*-	60S ribosomal protein L7a		
Niben101Scf05217g03003.1	sp|Q8LEZ8|AP1S1_ARATH	***-	AP-1 complex subunit sigma-1	IPR000804 (Clathrin adaptor complex, small chain), IPR016635 (Adaptor protein complex, sigma subunit)	GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf04007g02007.1	sp|Q9FYC2|PAO_ARATH	****	Pheophorbide a oxygenase, chloroplastic	IPR013626 (Pheophorbide a oxygenase)	GO:0010277 (chlorophyllide a oxygenase [overall] activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03595g01001.1	sp|Q9M995|GUN5_ARATH	***-	Endoglucanase 5	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like), IPR019028 (Carbohydrate binding domain CBM49)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf05294g00033.1	sp|Q8LHP0|ELOF1_ORYSJ	***-	Transcription elongation factor 1 homolog	IPR007808 (Transcription elongation factor 1)	
Niben101Scf00974g01002.1	sp|O48850|VA725_ARATH	--*-	Vesicle-associated membrane protein 725		
Niben101Scf04457g02004.1	AT3G18490.1	***-	Eukaryotic aspartyl protease family protein LENGTH=500	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01438g01010.1	sp|P98046|COX2_TARSY	*-**	Cytochrome c oxidase subunit 2	IPR008972 (Cupredoxin)	GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0016020 (membrane)
Niben101Scf02074g06069.1	sp|Q1KXV9|PSAA_HELAN	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf04234g00003.1	sp|Q6Z6W2|MAD57_ORYSJ	--*-	MADS-box transcription factor 57	IPR002100 (Transcription factor, MADS-box), IPR008566 (Herpesvirus UL96/Rhadinovirus)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01986g00013.1			Unknown protein		
Niben101Scf09044g01015.1	sp|P81370|TLP_ACTDE	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf03264g05014.1	ref|XP_002314042.1|	*-*-	PHD finger family protein [Populus trichocarpa] gb|EEE87997.1| PHD finger family protein [Populus trichocarpa]		
Niben101Scf07466g06004.1	sp|Q94F40|GDL9_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf28230g00007.1	AT3G23740.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=566		
Niben101Scf00370g04030.1	sp|Q9MA90|PNC1_ARATH	***-	Peroxisomal adenine nucleotide carrier 1	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf00225g06015.1	AT1G64720.1	****	Polyketide cyclase/dehydrase and lipid transport superfamily protein LENGTH=385	IPR002913 (START domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf07823g00012.1	sp|Q8HVT0|NDHI_ENYSE	***-	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic	IPR017896 (4Fe-4S ferredoxin-type, iron-sulphur binding domain)	GO:0051536 (iron-sulfur cluster binding)
Niben101Scf08391g01025.1	emb|CDY00123.1|	*-*-	BnaC09g01780D [Brassica napus]	IPR007679 (Protein of unknown function DUF569), IPR008999 (Actin cross-linking)	
Niben101Scf05647g00004.1	sp|Q65FT5|MENE_BACLD	--*-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf13029g00005.1	sp|Q3KRE6|KLDC2_RAT	***-	Kelch domain-containing protein 2	IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf00689g00013.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08195g06013.1	sp|Q0WPZ6|PP158_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01156g00002.1	AT5G12040.1	***-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein LENGTH=369	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf02581g01011.1	sp|Q8T277|PRKAG_DICDI	***-	5'-AMP-activated protein kinase subunit gamma	IPR000644 (CBS domain), IPR014756 (Immunoglobulin E-set)	
Niben101Scf19421g00012.1	AT1G69830.1	****	alpha-amylase-like 3 LENGTH=887	IPR015902 (Glycoside hydrolase, family 13)	GO:0003824 (catalytic activity), GO:0004556 (alpha-amylase activity), GO:0005509 (calcium ion binding), GO:0005975 (carbohydrate metabolic process), GO:0043169 (cation binding)
Niben101Scf11609g03002.1	sp|Q43358|VCL_THECC	*-*-	Vicilin	IPR006792 (Vicilin, N-terminal), IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf07398g01006.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf17164g00010.1	sp|Q06197|IDHC_SOYBN	****	Isocitrate dehydrogenase [NADP]	IPR004790 (Isocitrate dehydrogenase NADP-dependent), IPR024084 (Isopropylmalate dehydrogenase-like domain)	GO:0000287 (magnesium ion binding), GO:0004450 (isocitrate dehydrogenase (NADP+) activity), GO:0006102 (isocitrate metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01236g03010.1	emb|CAP66279.1|	***-	NBS-LRR disease resistance protein [Musa balbisiana]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf02440g01010.1			Unknown protein		
Niben101Scf01956g12014.1	sp|Q8VZ91|EF103_ARATH	*-**	Ethylene-responsive transcription factor 6	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11706g00007.1	ref|XP_002869709.1|	*-**	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH45968.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf01700g02004.1	sp|Q7XHI9|BH084_ARATH	***-	Transcription factor bHLH84	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01373g00004.1			Unknown protein		
Niben101Scf04309g00007.1	sp|Q9C5E5|DGK5_ARATH	****	Diacylglycerol kinase 5	IPR000756 (Diacylglycerol kinase, accessory domain), IPR001206 (Diacylglycerol kinase, catalytic domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf07391g01020.1	AT4G00752.1	*-*-	UBX domain-containing protein LENGTH=469	IPR003903 (Ubiquitin interacting motif), IPR009060 (UBA-like), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf03085g00012.1	ref|WP_019336371.1|	*-*-	anaerobic ribonucleoside triphosphate reductase [Stenotrophomonas maltophilia]	IPR007402 (Protein of unknown function DUF455)	
Niben101Scf03046g07012.1	sp|Q9FLG2|MRS22_ARATH	*-**	Magnesium transporter MRS2-2	IPR004252 (Probable transposase, Ptta/En/Spm, plant), IPR026573 (Magnesium transporter MRS2/LPE10)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport)
Niben101Scf12515g00031.1	sp|Q91VC0|DCTP1_RAT	***-	dCTP pyrophosphatase 1	IPR004518 (NTP pyrophosphohydrolase MazG, putative catalytic core), IPR009039 (EAR)	
Niben101Scf01276g05002.1			Unknown protein		
Niben101Scf22811g00015.1	sp|Q6P7N4|HMCES_XENTR	***-	Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein	IPR003738 (Protein of unknown function DUF159)	
Niben101Scf08047g01012.1	sp|Q9LZT4|EXLA1_ARATH	***-	Expansin-like A1	IPR007117 (Expansin, cellulose-binding-like domain)	
Niben101Scf03070g01006.1	sp|Q9LSN7|BH147_ARATH	***-	Transcription factor bHLH147	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf08374g06004.1	sp|Q9S7A9|SPL4_ARATH	****	Squamosa promoter-binding-like protein 4	IPR017238 (Squamosa promoter-binding protein)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Ctg08589g00004.1	AT1G30820.1	*-**	CTP synthase family protein LENGTH=600	IPR004468 (CTP synthase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003883 (CTP synthase activity), GO:0006221 (pyrimidine nucleotide biosynthetic process)
Niben101Scf05414g02027.1	sp|A9NEX8|NAGB_ACHLI	****	Glucosamine-6-phosphate deaminase	IPR006148 (Glucosamine/galactosamine-6-phosphate isomerase)	GO:0005975 (carbohydrate metabolic process), GO:0006098 (pentose-phosphate shunt), GO:0017057 (6-phosphogluconolactonase activity)
Niben101Scf00799g01006.1	AT1G21722.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=233		
Niben101Scf02873g00002.1	AT2G31010.1	****	Protein kinase superfamily protein LENGTH=775	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02622g12029.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf00712g08011.1	sp|Q9FII1|FK118_ARATH	*-*-	F-box/kelch-repeat protein	IPR001810 (F-box domain), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf01187g01003.1	ref|XP_002530394.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF31964.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03091g00005.1	sp|Q4WD95|SEC16_ASPFU	*-**	COPII coat assembly protein sec16	IPR024340 (Sec16, central conserved domain), IPR024880 (COPII coat assembly protein, Sec16)	GO:0048208 (COPII vesicle coating)
Niben101Scf00220g05021.1	AT1G79910.1	*-*-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=381	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf04328g00019.1	AT5G63310.1	****	nucleoside diphosphate kinase 2 LENGTH=231	IPR001564 (Nucleoside diphosphate kinase)	GO:0004550 (nucleoside diphosphate kinase activity), GO:0005524 (ATP binding), GO:0006165 (nucleoside diphosphate phosphorylation), GO:0006183 (GTP biosynthetic process), GO:0006228 (UTP biosynthetic process), GO:0006241 (CTP biosynthetic process)
Niben101Scf06806g01002.1	AT2G44010.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=101		
Niben101Scf01697g06007.1	AT4G17900.1	***-	PLATZ transcription factor family protein LENGTH=227	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf07895g06012.1	ref|XP_007036324.1|	***-	Adenine nucleotide alpha hydrolases-like superfamily protein, putative [Theobroma cacao] gb|EOY20825.1| Adenine nucleotide alpha hydrolases-like superfamily protein, putative [Theobroma cacao]		
Niben101Scf07896g03008.1	AT1G28340.1	*-*-	receptor like protein 4 LENGTH=626		
Niben101Scf03804g01025.1	ref|XP_002307432.1|	*-*-	gluc [Populus trichocarpa]		
Niben101Scf06153g01005.1	sp|A4VCM0|NAC45_ARATH	*-*-	NAC domain-containing protein 45	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03932g02001.1	sp|Q6Z5I0|CPS2_ORYSJ	*-*-	Ent-copalyl diphosphate synthase 2		
Niben101Scf00278g11005.1	AT1G65790.1	*-**	receptor kinase 1 LENGTH=843	IPR011009 (Protein kinase-like domain), IPR021820 (S-locus receptor kinase, C-terminal)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02972g05013.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Ctg13383g00004.1	gb|KEH20745.1|	*-*-	myosin heavy chain, putative [Medicago truncatula]		
Niben101Scf01383g00011.1	AT5G61620.1	*-*-	myb-like transcription factor family protein LENGTH=317	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf02144g00002.1	sp|B3GS44|LRE_ARATH	***-	GPI-anchored protein LORELEI		
Niben101Scf04889g00021.1	gb|AAT00536.1|	*-*-	effector of transcription [Brassica napus]		
Niben101Scf08519g02014.1	sp|Q9SH60|PP103_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01763g00004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06412g04015.1			Unknown protein		
Niben101Scf10381g00021.1	AT5G64970.1	***-	Mitochondrial substrate carrier family protein LENGTH=428	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf04535g02007.1			Unknown protein		
Niben101Scf12589g00038.1	sp|Q8WVE0|N6MT2_HUMAN	****	N(6)-adenine-specific DNA methyltransferase 2	IPR019369 (DNA methylase, N-6 adenine-specific, eukaryotic)	GO:0003676 (nucleic acid binding), GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf00747g12029.1	AT5G50420.1	***-	O-fucosyltransferase family protein LENGTH=566	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf08729g01002.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00312g00004.1	sp|Q9LI83|ALA10_ARATH	****	Phospholipid-transporting ATPase 10	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf10343g01006.1	sp|Q39950|NLTP_HELAN	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf02896g00011.1	sp|Q9QYI3|DNJC7_MOUSE	--*-	DnaJ homolog subfamily C member 7		
Niben101Scf03169g06001.1	sp|O23661|ARFC_ARATH	****	Auxin response factor 3	IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone)
Niben101Scf03029g00005.1	sp|P21335|TADA_BACSU	*-**	tRNA-specific adenosine deaminase	IPR016193 (Cytidine deaminase-like), IPR028883 (tRNA-specific adenosine deaminase)	GO:0002100 (tRNA wobble adenosine to inosine editing), GO:0003824 (catalytic activity), GO:0008251 (tRNA-specific adenosine deaminase activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity)
Niben101Scf01382g01002.1	ref|XP_007013849.1|	***-	Multipolar spindle 1, putative isoform 1 [Theobroma cacao] gb|EOY31468.1| Multipolar spindle 1, putative isoform 1 [Theobroma cacao]		
Niben101Scf04539g00005.1	sp|Q30ZR6|SYGB_DESAG	--*-	Glycine--tRNA ligase beta subunit		
Niben101Scf09192g02002.1	ref|WP_007353692.1|	****	MULTISPECIES: hypothetical protein [Kamptonema] emb|CBN54467.1| conserved membrane hypothetical protein [ [[Oscillatoria] sp. PCC 6506]	IPR001727 (Uncharacterised protein family UPF0016)	GO:0016020 (membrane)
Niben101Scf01370g01002.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf37335g00005.1	sp|Q9SN74|BH047_ARATH	***-	Transcription factor bHLH47	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01283g02011.1	sp|E1BK52|STK10_BOVIN	*-**	Serine/threonine-protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00199g05004.1	sp|Q2Z2E9|SCR_IPONI	*-*-	Protein SCARECROW	IPR005202 (Transcription factor GRAS)	
Niben101Scf00371g00005.1	AT4G27430.1	*-*-	COP1-interacting protein 7 LENGTH=1058		
Niben101Scf01566g02013.1			Unknown protein		
Niben101Scf00753g02007.1	dbj|BAD16379.1|	--*-	ATP synthase subunit-like protein [Oryza sativa Japonica Group]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf04134g01006.1	sp|P46270|QCR9_SOLTU	****	Cytochrome b-c1 complex subunit 9	IPR008027 (Cytochrome b-c1 complex subunit 9)	GO:0005743 (mitochondrial inner membrane), GO:0005750 (mitochondrial respiratory chain complex III), GO:0006122 (mitochondrial electron transport, ubiquinol to cytochrome c)
Niben101Scf02237g04001.1			Unknown protein		
Niben101Scf00811g08003.1	ref|XP_002529925.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF32479.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf14390g01001.1	sp|Q32F19|RSMF_SHIDS	*-**	Ribosomal RNA small subunit methyltransferase F	IPR023267 (RNA (C5-cytosine) methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02829g05006.1	AT1G03080.1	*-*-	kinase interacting (KIP1-like) family protein LENGTH=1733	IPR011684 (KIP1-like)	
Niben101Scf01184g08003.1	AT5G16990.1	****	Zinc-binding dehydrogenase family protein LENGTH=343	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05439g03001.1			Unknown protein		
Niben101Scf06898g01002.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf08341g04007.1	AT4G13050.1	***-	Acyl-ACP thioesterase LENGTH=367	IPR002864 (Acyl-ACP thioesterase), IPR021113 (Acyl-ACP-thioesterase, N-terminal), IPR029069 (HotDog domain)	GO:0006633 (fatty acid biosynthetic process), GO:0016790 (thiolester hydrolase activity)
Niben101Scf12205g02022.1	sp|Q8LG95|PP332_ARATH	***-	Pentatricopeptide repeat-containing protein		
Niben101Scf03462g04008.1	AT5G37540.1	***-	Eukaryotic aspartyl protease family protein LENGTH=442	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf11105g01001.1	sp|Q975H5|EF2_SULTO	*-*-	Elongation factor 2	IPR000795 (Elongation factor, GTP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf06420g01007.1	sp|Q84M94|FBK15_ARATH	*-*-	F-box/kelch-repeat protein	IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf00454g02007.1	sp|Q9LW48|ERF5_NICSY	****	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04233g00002.1	sp|P49211|RL321_ARATH	***-	60S ribosomal protein L32-1	IPR001515 (Ribosomal protein L32e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00107g00007.1	AT1G49720.2	****	abscisic acid responsive element-binding factor 1 LENGTH=403	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03732g07010.1	AT3G52990.1	****	Pyruvate kinase family protein LENGTH=527	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf11636g00004.1	sp|P83332|TLP1_PRUPE	***-	Thaumatin-like protein 1	IPR001938 (Thaumatin)	
Niben101Scf06551g00017.1	gb|KEH30865.1|	--*-	MADS-box transcription factor [Medicago truncatula]		
Niben101Scf00212g03033.1	sp|A0KQ23|MURA_AERHH	*-**	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	IPR005750 (UDP-N-acetylglucosamine 1-carboxyvinyltransferase), IPR013792 (RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta)	GO:0003824 (catalytic activity), GO:0008760 (UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups), GO:0019277 (UDP-N-acetylgalactosamine biosynthetic process)
Niben101Scf08723g01003.1	AT5G66200.1	***-	armadillo repeat only 2 LENGTH=651	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf04396g04025.1	AT1G05460.1	*-*-	P-loop containing nucleoside triphosphate hydrolases superfamily protein LENGTH=1002	IPR026127 (Probable RNA helicase SDE3), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01763g00016.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00488g02003.1	sp|P54211|PMA1_DUNBI	*-**	Plasma membrane ATPase	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf14642g04010.1	sp|P83218|PME_DAUCA	****	Pectinesterase	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf08196g00012.1	sp|Q9LW48|ERF5_NICSY	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06423g03024.1	sp|Q8GUH1|PUB33_ARATH	*-*-	U-box domain-containing protein 33	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	
Niben101Scf07314g02006.1	ref|XP_002523265.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF39104.1| conserved hypothetical protein [Ricinus communis]	IPR006747 (Protein of unknown function DUF599)	
Niben101Scf01269g13035.1	gb|AEX57670.1|	*-*-	rib small subunit 4 (mitochondrion) [Raphanus sativus]	IPR022801 (Ribosomal protein S4/S9)	
Niben101Scf02528g00007.1	sp|Q9CHL8|LMRA_LACLA	*-**	Multidrug resistance ABC transporter ATP-binding and permease protein	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf03915g02001.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01517g08001.1	sp|P27522|CB13_SOLLC	***-	Chlorophyll a-b binding protein 8, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Ctg10487g00002.1	sp|Q9M2B4|ALFL3_ARATH	*-*-	PHD finger protein ALFIN-LIKE 3	IPR021998 (Alfin)	GO:0006355 (regulation of transcription, DNA-templated), GO:0042393 (histone binding)
Niben101Scf01374g01019.1	sp|Q9LV40|ROGF8_ARATH	****	Rho guanine nucleotide exchange factor 8	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf01208g03023.1	tpg|DAA45939.1|	***-	TPA: hypothetical protein ZEAMMB73_240931 [Zea mays]		
Niben101Scf00146g01002.1	sp|Q9FJP6|PUB38_ARATH	***-	U-box domain-containing protein 38	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf01721g07011.1	AT5G24940.1	****	Protein phosphatase 2C family protein LENGTH=447	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf00821g08003.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02268g06020.1	sp|Q8LAM0|UBP4_ARATH	****	Ubiquitin carboxyl-terminal hydrolase 4	IPR001394 (Peptidase C19, ubiquitin carboxyl-terminal hydrolase)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf06183g07015.1	sp|A5ELP1|RL1_BRASB	***-	50S ribosomal protein L1	IPR016094 (Ribosomal protein L1, 2-layer alpha/beta-sandwich), IPR016095 (Ribosomal protein L1, 3-layer alpha/beta-sandwich), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding)
Niben101Scf03362g05002.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR002902 (Gnk2-homologous domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06461g04011.1	AT4G31170.1	****	Protein kinase superfamily protein LENGTH=412	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00983g02001.1	AT1G54340.1	****	isocitrate dehydrogenase LENGTH=416	IPR004790 (Isocitrate dehydrogenase NADP-dependent), IPR024084 (Isopropylmalate dehydrogenase-like domain)	GO:0000287 (magnesium ion binding), GO:0004450 (isocitrate dehydrogenase (NADP+) activity), GO:0006102 (isocitrate metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13188g00012.1	emb|CBY05740.1|	*-*-	ASR2 protein [Solanum chilense]	IPR003496 (ABA/WDS induced protein)	GO:0006950 (response to stress)
Niben101Scf10144g01033.1	ref|NP_001043108.1|	***-	product [Oryza sativa Japonica Group]	IPR007770 (Protein of unknown function DUF679)	
Niben101Scf02006g04023.1	sp|Q8LDQ4|TAP46_ARATH	*-*-	PP2A regulatory subunit TAP46	IPR007304 (TAP42-like protein)	GO:0009966 (regulation of signal transduction)
Niben101Scf07115g00004.1	sp|Q09052|ACCO1_BRAJU	*-*-	1-aminocyclopropane-1-carboxylate oxidase	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf02698g00002.1	sp|Q0K1H0|1A1D_CUPNH	***-	1-aminocyclopropane-1-carboxylate deaminase	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme), IPR027278 (1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase)	
Niben101Scf01520g06008.1	sp|F6HDM2|NNRD_VITVI	***-	ATP-dependent (S)-NAD(P)H-hydrate dehydratase	IPR029056 (Ribokinase-like)	
Niben101Scf05118g05002.1	sp|Q4KM31|LIMD2_RAT	--*-	LIM domain-containing protein 2		
Niben101Scf03621g00003.1	gb|AAU93590.2|	*-*-	Late blight resistance protein, putative [Solanum demissum]	IPR002182 (NB-ARC), IPR021929 (Late blight resistance protein R1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf02072g02030.1	sp|O75494|SRS10_HUMAN	*-*-	Serine/arginine-rich splicing factor 10	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03867g02046.1	sp|Q5R6D1|CATB_PONAB	***-	Cathepsin B	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity), GO:0050790 (regulation of catalytic activity)
Niben101Scf01365g05003.1	AT1G09960.1	****	sucrose transporter 4 LENGTH=510	IPR005828 (General substrate transporter), IPR005989 (Sucrose/H+ symporter, plant), IPR020846 (Major facilitator superfamily domain)	GO:0005887 (integral component of plasma membrane), GO:0008515 (sucrose transmembrane transporter activity), GO:0015770 (sucrose transport), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03839g00006.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05118g07001.1	gb|KFB85176.1|	***-	haloacid dehalogenase [Calothrix sp. 336/3]	IPR023214 (HAD-like domain)	
Niben101Scf03015g09003.1	ref|XP_002532970.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29421.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02562g03011.1	AT1G15740.1	***-	Leucine-rich repeat family protein LENGTH=585	IPR001611 (Leucine-rich repeat), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf02332g00007.1	sp|Q9LFC5|PP360_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06345g00002.1	AT2G21990.1	***-	Protein of unknown function, DUF617 LENGTH=252	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf01993g07002.1	AT1G78560.1	***-	Sodium Bile acid symporter family LENGTH=401	IPR002657 (Bile acid:sodium symporter/arsenical resistance protein  Acr3)	GO:0016020 (membrane)
Niben101Scf00168g03001.1	sp|O22938|Y2182_ARATH	*-*-	Leucine-rich repeat receptor-like tyrosine-protein kinase	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf01240g05017.1	ref|NP_001042161.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf07437g02002.1	sp|Q3BAP0|PSAA_PHAAO	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf14009g00002.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01623g06028.1	sp|Q8GZ17|COBL7_ARATH	***-	COBRA-like protein 7	IPR006918 (COBRA, plant), IPR008965 (Carbohydrate-binding domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0030246 (carbohydrate binding), GO:0030247 (polysaccharide binding), GO:0031225 (anchored component of membrane)
Niben101Scf08800g00001.1	sp|Q9FJD5|LAC17_ARATH	***-	Laccase-17	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02738g00001.1	sp|Q9LFT0|TBL19_ARATH	*-*-	Protein trichome birefringence-like 19	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf01687g04006.1	ref|XP_010109688.1|	***-	Zinc finger protein 4 [Morus notabilis] gb|EXC24158.1| Zinc finger protein 4 [Morus notabilis]		
Niben101Scf04432g06005.1	AT3G04970.1	*-*-	DHHC-type zinc finger family protein LENGTH=397		
Niben101Scf11380g00004.1	ref|WP_013186687.1|	****	TspO and MBR [Croceibacter atlanticus] ref|YP_003715686.1| integral membrane protein [Croceibacter atlanticus HTCC2559] gb|EAP88011.1| integral membrane protein [Croceibacter atlanticus HTCC2559]	IPR004307 (TspO/MBR-related protein)	GO:0016021 (integral component of membrane)
Niben101Scf00128g02010.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09317g01011.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2		
Niben101Scf13942g00025.1	sp|Q9BXM0|PRAX_HUMAN	*-*-	Periaxin		
Niben101Scf03039g03010.1	sp|Q9SHV1|GLR22_ARATH	*-**	Glutamate receptor 2.2	IPR001320 (Ionotropic glutamate receptor), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf15532g01004.1	gb|KEH32569.1|	***-	alpha-rhamnosidase-like protein [Medicago truncatula]	IPR011040 (Sialidases)	
Niben101Scf01395g04002.1	AT1G30460.1	*-*-	cleavage and polyadenylation specificity factor 30 LENGTH=631	IPR000571 (Zinc finger, CCCH-type), IPR007275 (YTH domain)	GO:0046872 (metal ion binding)
Niben101Scf04099g00003.1	sp|Q8GUH1|PUB33_ARATH	*-*-	U-box domain-containing protein 33	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf15054g03005.1	ref|NP_001046922.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf01509g01002.1	emb|CAA65337.1|	--*-	PAC [Arabidopsis thaliana]		
Niben101Scf08516g00013.1	emb|CDY33378.1|	***-	BnaC05g12050D [Brassica napus]		
Niben101Scf02360g00007.1	sp|Q9FNF8|P4KG3_ARATH	*-*-	Phosphatidylinositol 4-kinase gamma 3	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf03252g02006.1	sp|Q9LNT9|ASK4_ARATH	***-	SKP1-like protein 4	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf02632g04001.1	sp|Q8GWW7|AGUA_ARATH	****	Agmatine deiminase	IPR007466 (Peptidyl-arginine deiminase, Porphyromonas-type)	GO:0004668 (protein-arginine deiminase activity), GO:0009446 (putrescine biosynthetic process), GO:0047632 (agmatine deiminase activity)
Niben101Scf07182g03014.1	sp|Q9M1Y0|ATG4B_ARATH	*-*-	Cysteine protease ATG4b	IPR005078 (Peptidase C54)	
Niben101Scf10409g00013.1	emb|CDY53602.1|	--*-	BnaC09g51900D [Brassica napus]		
Niben101Scf03407g01006.1	sp|Q8GXM8|MATE7_ARATH	--*-	MATE efflux family protein 7		
Niben101Scf01310g00001.1	sp|Q94JW8|SPL6_ARATH	****	Squamosa promoter-binding-like protein 6	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf11684g03005.1	sp|Q5VYK3|ECM29_HUMAN	*-*-	Proteasome-associated protein ECM29 homolog	IPR016024 (Armadillo-type fold), IPR026827 (Proteasome component ECM29/Translational activator GCN1)	GO:0005488 (binding)
Niben101Scf02301g02007.1	sp|O24592|NCED1_MAIZE	***-	9-cis-epoxycarotenoid dioxygenase 1, chloroplastic	IPR004294 (Carotenoid oxygenase)	
Niben101Scf04801g00003.1	sp|D7MMW4|CSPLJ_ARALL	*-*-	CASP-like protein 4A2	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf01784g06005.1	ref|XP_002510245.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF52432.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07590g07020.1	AT3G26370.1	***-	O-fucosyltransferase family protein LENGTH=557	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf07741g02029.1	sp|O04450|TCPE_ARATH	*-*-	T-complex protein 1 subunit epsilon	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process)
Niben101Scf15657g01012.1	ref|XP_007033939.1|	***-	Far-red impaired responsive family protein [Theobroma cacao] gb|EOY04865.1| Far-red impaired responsive family protein [Theobroma cacao]		
Niben101Scf11802g01006.1	sp|Q56YN8|SMC3_ARATH	***-	Structural maintenance of chromosomes protein 3	IPR003395 (RecF/RecN/SMC, N-terminal), IPR010935 (SMCs flexible hinge), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029685 (Structural maintenance of chromosomes protein 3)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0006281 (DNA repair), GO:0007064 (mitotic sister chromatid cohesion), GO:0008280 (cohesin core heterodimer), GO:0051276 (chromosome organization)
Niben101Scf04107g00010.1	gb|KEH39256.1|	***-	F-box/FBD/LRR protein [Medicago truncatula]		
Niben101Scf16566g00005.1	sp|Q8GW29|LOG7_ARATH	***-	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf03831g00001.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02466g03003.1	sp|Q84T94|P2C35_ORYSJ	*-*-	Protein phosphatase 2C 35	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf01230g00008.1	sp|Q9SUY0|FB244_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf01752g08008.1	sp|O64882|BGL17_ARATH	*-*-	Beta-glucosidase 17	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04610g03020.1			Unknown protein		
Niben101Scf11178g01002.1	sp|Q7FNS8|PSAI_ATRBE	****	Photosystem I reaction center subunit VIII	IPR001302 (Photosystem I PsaI, reaction centre subunit VIII)	GO:0009522 (photosystem I), GO:0015979 (photosynthesis)
Niben101Scf07631g02022.1	gb|ACG48000.1|	*-*-	holocarboxylase synthetase [Zea mays]		
Niben101Scf00774g01045.1	sp|Q9ZUH1|Y2424_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0051260 (protein homooligomerization)
Niben101Scf00901g03001.1	AT3G25910.1	*-*-	Protein of unknown function (DUF1644) LENGTH=372	IPR012866 (Protein of unknown function DUF1644)	
Niben101Ctg15426g00002.1	sp|Q9SE51|SURF1_ARATH	***-	Surfeit locus protein 1	IPR002994 (Surfeit locus 1/Shy1)	GO:0016020 (membrane)
Niben101Scf04287g05001.1			Unknown protein		
Niben101Scf12361g03004.1	sp|Q7TT28|REXO1_MOUSE	*-**	RNA exonuclease 1 homolog	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf02618g04010.1	sp|Q941R6|MLP31_ARATH	***-	MLP-like protein 31	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf01685g03001.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf00016g00006.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04528g10005.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021820 (S-locus receptor kinase, C-terminal), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf00201g00009.1	sp|Q00531|JI60_HORVU	--*-	60 kDa jasmonate-induced protein		
Niben101Scf04462g00006.1	sp|Q2IK81|EFG2_ANADE	*-*-	Elongation factor G 2	IPR000795 (Elongation factor, GTP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf02215g02008.1	AT5G38630.1	***-	cytochrome B561-1 LENGTH=230	IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Ctg13614g00002.1	sp|Q9FFF9|APC1_ARATH	*-*-	Anaphase-promoting complex subunit 1		
Niben101Scf00066g00001.1			Unknown protein		
Niben101Scf00784g02019.1	sp|Q9AWM9|RPF2_ORYSJ	***-	Ribosome production factor 2 homolog	IPR007109 (Brix domain)	
Niben101Scf06193g00011.1			Unknown protein		
Niben101Scf06872g02002.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf15953g00008.1	sp|Q0IIM8|TBC8B_HUMAN	*-*-	TBC1 domain family member 8B	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf03886g04014.1	AT3G48710.1	*-*-	DEK domain-containing chromatin associated protein LENGTH=462	IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding)
Niben101Scf00177g09006.1	ref|XP_007030238.1|	--*-	Serine-threonine protein kinase, plant-type, putative [Theobroma cacao] gb|EOY10740.1| Serine-threonine protein kinase, plant-type, putative [Theobroma cacao]		
Niben101Scf00318g09010.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf05183g01003.1	sp|A6TB06|RSMF_KLEP7	*-**	Ribosomal RNA small subunit methyltransferase F	IPR023267 (RNA (C5-cytosine) methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0006364 (rRNA processing), GO:0008168 (methyltransferase activity), GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity)
Niben101Scf00854g01012.1	sp|Q110A9|RL23_TRIEI	***-	50S ribosomal protein L23	IPR012340 (Nucleic acid-binding, OB-fold), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Ctg14627g00001.1			Unknown protein		
Niben101Scf12414g01019.1	sp|P62302|RS13_SOYBN	***-	40S ribosomal protein S13	IPR000589 (Ribosomal protein S15), IPR012606 (Ribosomal protein S13/S15, N-terminal)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06344g06003.1	ref|XP_003615152.1|	****	2-dehydro-3-deoxyphosphoheptonate aldolase (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase) [Medicago truncatula] gb|AES98110.1| phospho-2-dehydro-3-deoxyheptonate aldolase [Medicago truncatula]	IPR002480 (DAHP synthetase, class II)	GO:0003849 (3-deoxy-7-phosphoheptulonate synthase activity), GO:0009073 (aromatic amino acid family biosynthetic process)
Niben101Scf14830g00001.1	sp|Q8RWE9|NAT5_ARATH	*-*-	Nucleobase-ascorbate transporter 5		
Niben101Scf07580g00007.1	AT4G10360.1	***-	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein LENGTH=266	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf01427g02007.1	sp|Q9Y5A7|NUB1_HUMAN	--*-	NEDD8 ultimate buster 1	IPR029071 (Ubiquitin-related domain)	
Niben101Scf08884g00016.1			Unknown protein		
Niben101Scf00132g03012.1	sp|Q9SGW3|PSD8A_ARATH	****	26S proteasome non-ATPase regulatory subunit 8 homolog A	IPR005062 (SAC3/GANP/Nin1/mts3/eIF-3 p25)	GO:0005838 (proteasome regulatory particle), GO:0006508 (proteolysis)
Niben101Scf08670g00031.1	sp|Q038T2|ERA_LACC3	***-	GTPase Era	IPR005225 (Small GTP-binding protein domain), IPR005662 (GTP-binding protein Era), IPR015946 (K homology domain-like, alpha/beta), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003723 (RNA binding), GO:0005525 (GTP binding), GO:0005622 (intracellular)
Niben101Scf04627g05002.1	sp|O80822|PER25_ARATH	****	Peroxidase 25	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09517g01008.1	AT1G13380.1	***-	Protein of unknown function (DUF1218) LENGTH=188	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf05363g02005.1	sp|Q03237|MYBB_CHICK	*-*-	Myb-related protein B	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01623g02015.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf03469g04009.1	AT5G39840.1	***-	ATP-dependent RNA helicase, mitochondrial, putative LENGTH=776	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf08566g00007.1	ref|WP_030600374.1|	***-	2-nitropropane dioxygenase [Streptomyces rimosus]	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0018580 (nitronate monooxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06027g01016.1	sp|Q8RZ40|PLA3_ORYSJ	***-	Phospholipase A1-II 3	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf01991g04010.1	sp|P26573|RBS8_NICPL	***-	Ribulose bisphosphate carboxylase small chain 8B, chloroplastic	IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain)	
Niben101Scf02589g00001.1	AT3G17205.1	****	ubiquitin protein ligase 6 LENGTH=1029	IPR000569 (HECT)	GO:0004842 (ubiquitin-protein transferase activity)
Niben101Scf00470g07002.1	AT2G46260.1	***-	BTB/POZ/Kelch-associated protein LENGTH=561	IPR011333 (BTB/POZ fold), IPR011705 (BTB/Kelch-associated)	GO:0005515 (protein binding)
Niben101Scf11291g00013.1	sp|Q6DJ03|MEMO1_XENTR	***-	Protein MEMO1	IPR002737 (MEMO1 family)	
Niben101Scf00578g01002.1			Unknown protein		
Niben101Scf05824g13008.1	sp|Q9SUI5|PSAK_ARATH	****	Photosystem I reaction center subunit psaK, chloroplastic	IPR000549 (Photosystem I PsaG/PsaK protein), IPR023618 (Photosystem I PsaG/PsaK domain)	GO:0009522 (photosystem I), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0016168 (chlorophyll binding)
Niben101Scf05321g06001.1	AT5G50011.1	***-	conserved peptide upstream open reading frame 37 LENGTH=51		
Niben101Scf03040g01004.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00736g00008.1	gb|KEH37526.1|	***-	EEIG1/EHBP1 protein amino-terminal domain protein [Medicago truncatula]	IPR018392 (LysM domain), IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf04801g01004.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01305g00010.1	AT5G47320.1	*-*-	ribosomal protein S19 LENGTH=212	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06218g03006.1	sp|Q8CXD3|DNAJ_OCEIH	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf01478g00014.1	sp|P52855|RLA1_MAIZE	*-*-	60S acidic ribosomal protein P1	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Ctg15570g00001.1	ref|XP_007030920.1|	*-*-	S-aden , putative isoform 1 [Theobroma cacao]		
Niben101Ctg15204g00004.1	sp|Q8CFK2|TF3B_MOUSE	--**	Transcription factor IIIB 90 kDa subunit	IPR000812 (Transcription factor TFIIB), IPR011665 (Brf1, TBP-binding domain)	GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf04249g01002.1	sp|Q9N1U2|HSP76_SAGOE	*-*-	Heat shock 70 kDa protein 6	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain)	
Niben101Scf07527g03003.1	ref|XP_002521307.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF41081.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02212g00007.1			Unknown protein		
Niben101Scf05324g02006.1	AT5G58787.1	*-*-	RING/U-box superfamily protein LENGTH=242		
Niben101Scf01320g03006.1			Unknown protein		
Niben101Scf03341g04009.1	AT1G76480.2	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=231		
Niben101Scf00050g03017.1	AT4G35880.1	*-*-	Eukaryotic aspartyl protease family protein LENGTH=524	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf07937g03005.1	sp|P94026|RBCMT_TOBAC	*-*-	Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic	IPR015353 (Rubisco LSMT, substrate-binding domain)	
Niben101Scf04709g00018.1	sp|Q9ZUT4|PP192_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07405g01009.1	sp|Q6F1Z0|RS19_MESFL	--*-	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06625g02005.1	sp|A1URA3|FTSH_BARBK	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01009g01017.1	emb|CDX93386.1|	*-*-	BnaC04g45100D [Brassica napus]		
Niben101Ctg14902g00003.1	sp|O82811|NRT21_ARATH	***-	High-affinity nitrate transporter 2.1	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf08443g01015.1	gb|AEW48194.1|	--*-	disease resistance protein RGH5 [Solanum chacoense]		
Niben101Scf04690g02038.1	sp|Q94B77|FH5_ARATH	*-*-	Formin-like protein 5	IPR015425 (Formin, FH2 domain)	
Niben101Scf02389g00014.1	sp|O70551|SRPK1_MOUSE	--*-	SRSF protein kinase 1		
Niben101Scf20652g00020.1	sp|Q9C5U3|PRS8A_ARATH	***-	26S protease regulatory subunit 8 homolog A	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf01520g06007.1	sp|Q9LDG2|TBL10_ARATH	***-	Protein trichome birefringence-like 10	IPR026057 (PC-Esterase)	
Niben101Scf00176g00018.1			Unknown protein		
Niben101Scf19062g00009.1	AT3G19553.1	****	Amino acid permease family protein LENGTH=479	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf04883g00006.1			Unknown protein		
Niben101Scf25547g00009.1	sp|Q9XEC6|CRK36_ARATH	*-**	Cysteine-rich receptor-like protein kinase 36	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07194g00014.1	sp|P35283|RAB12_MOUSE	***-	Ras-related protein Rab-12	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf02461g02003.1	gb|AIQ51881.1|	--*-	lytic transglycosylase [Paenibacillus sp. FSL R7-0331]	IPR008258 (Lytic transglycosylase-like SLT domain), IPR023346 (Lysozyme-like domain)	
Niben101Scf03959g00016.1	AT2G01150.1	***-	RING-H2 finger protein 2B LENGTH=147	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03468g03027.1	sp|Q1AVY9|CARB_RUBXD	***-	Carbamoyl-phosphate synthase large chain	IPR005480 (Carbamoyl-phosphate synthetase, large subunit oligomerisation domain), IPR011607 (Methylglyoxal synthase-like domain), IPR011761 (ATP-grasp fold), IPR016185 (Pre-ATP-grasp domain)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0006807 (nitrogen compound metabolic process), GO:0008152 (metabolic process), GO:0046872 (metal ion binding)
Niben101Scf07459g00003.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]		
Niben101Scf03911g00004.1	sp|Q33C48|RPOC2_NICTO	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf11356g00014.1	sp|P46629|RAB25_RABIT	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf09192g03009.1	AT2G33205.1	***-	Serinc-domain containing serine and sphingolipid biosynthesis protein LENGTH=422	IPR005016 (Serine incorporator/TMS membrane protein)	GO:0016020 (membrane)
Niben101Scf14780g01001.1	sp|P93002|NPR1_ARATH	***-	Regulatory protein NPR1	IPR011333 (BTB/POZ fold), IPR020683 (Ankyrin repeat-containing domain), IPR021094 (NPR1/NIM1-like, C-terminal), IPR024228 (Domain of unknown function DUF3420)	GO:0005515 (protein binding)
Niben101Scf02653g05013.1	AT5G59100.1	****	Subtilisin-like serine endopeptidase family protein LENGTH=741	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02569g00021.1	AT5G04330.1	*-*-	Cytochrome P450 superfamily protein LENGTH=512	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf14299g00005.1			Unknown protein		
Niben101Scf01423g04012.1	sp|Q9FZ70|FDL1_ARATH	--*-	F-box/FBD/LRR-repeat protein		
Niben101Ctg12255g00002.1	sp|Q19266|KPC3_CAEEL	*-**	Protein kinase C-like 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09895g00006.1	sp|Q6C9R9|SFH5_YARLI	*-*-	Phosphatidylinositol transfer protein SFH5	IPR001251 (CRAL-TRIO domain), IPR009038 (GOLD), IPR011074 (CRAL/TRIO, N-terminal domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf06867g03002.1	sp|Q9FKZ3|LBD36_ARATH	***-	LOB domain-containing protein 36	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf32353g00004.1	AT4G36380.1	***-	Cytochrome P450 superfamily protein LENGTH=524	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03944g05015.1	AT4G17800.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=292	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf03776g00015.1	AT5G20840.1	***-	Phosphoinositide phosphatase family protein LENGTH=831	IPR002013 (SAC domain), IPR030213 (Phosphoinositide phosphatase SAC)	GO:0007033 (vacuole organization), GO:0036092 (phosphatidylinositol-3-phosphate biosynthetic process), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf01501g01004.1	sp|Q9LV40|ROGF8_ARATH	****	Rho guanine nucleotide exchange factor 8	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf09846g02018.1	sp|Q07405|ATPA_MYXXA	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf00905g16008.1	emb|CDY47421.1|	***-	BnaA02g21610D [Brassica napus]		
Niben101Scf00991g08004.1	sp|Q9FJX6|FH6_ARATH	***-	Formin-like protein 6	IPR015425 (Formin, FH2 domain)	
Niben101Scf07741g04026.1	sp|Q9NR34|MA1C1_HUMAN	*-**	Mannosyl-oligosaccharide 1,2-alpha-mannosidase IC	IPR001382 (Glycoside hydrolase, family 47)	GO:0004571 (mannosyl-oligosaccharide 1,2-alpha-mannosidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane)
Niben101Scf00704g04002.1	sp|O49048|VPS45_ARATH	***-	Vacuolar protein sorting-associated protein 45 homolog	IPR001619 (Sec1-like protein), IPR027482 (Sec1-like, domain 2)	GO:0006904 (vesicle docking involved in exocytosis), GO:0016192 (vesicle-mediated transport)
Niben101Scf04392g03001.1	ref|XP_007014461.1|	***-	EF-hand domain-containing protein 1, putative [Theobroma cacao] gb|EOY32080.1| EF-hand domain-containing protein 1, putative [Theobroma cacao]		
Niben101Scf03894g04001.1	sp|O23090|BH014_ARATH	***-	Transcription factor bHLH14	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf08803g00004.1			Unknown protein		
Niben101Scf07590g04011.1	sp|Q9FQ03|XRN3_ARATH	*-*-	5'-3' exoribonuclease 3	IPR004859 (Putative 5-3 exonuclease), IPR027073 (5'-3' exoribonuclease)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf06752g00004.1	AT5G12310.1	*-*-	RING/U-box superfamily protein LENGTH=254	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf04563g02007.1	sp|O65740|DEF2_CAPAN	***-	Defensin J1-2	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf21165g00004.1	prf||1718316A	***-	granule-bound starch synthase	IPR001296 (Glycosyl transferase, family 1), IPR013534 (Starch synthase, catalytic domain), IPR029056 (Ribokinase-like)	GO:0009058 (biosynthetic process)
Niben101Scf02364g04009.1			Unknown protein		
Niben101Scf30733g00002.1	dbj|BAO50886.1|	*-*-	cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]		
Niben101Scf03362g01010.1	sp|Q84JS6|KNAT6_ARATH	***-	Homeobox protein knotted-1-like 6	IPR005540 (KNOX1), IPR005541 (KNOX2)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf00797g17010.1	emb|CDX96805.1|	*-*-	BnaA08g23480D [Brassica napus]		
Niben101Scf00213g02014.1	AT3G26560.1	*-*-	ATP-dependent RNA helicase, putative LENGTH=1168	IPR011709 (Domain of unknown function DUF1605)	
Niben101Scf14344g01016.1	sp|Q8X9Y9|MURD_ECO57	****	UDP-N-acetylmuramoylalanine--D-glutamate ligase	IPR004101 (Mur ligase, C-terminal), IPR013221 (Mur ligase, central), IPR016040 (NAD(P)-binding domain)	GO:0005524 (ATP binding), GO:0009058 (biosynthetic process), GO:0016874 (ligase activity)
Niben101Scf07001g00004.1	sp|O80436|PTR29_ARATH	***-	Protein NRT1/ PTR FAMILY 5.5	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00285g10004.1	sp|P81392|MYB06_ANTMA	--*-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf11064g00002.1	ref|WP_031062443.1|	***-	enoyl-CoA hydratase [Streptomyces sp. NRRL F-5527]	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf02077g12027.1	sp|P59015|VPS18_DANRE	***-	Vacuolar protein sorting-associated protein 18 homolog	IPR007810 (Pep3/Vps18/deep orange)	
Niben101Scf10200g00006.1	sp|Q9S762|HIS1A_ARATH	--*-	ATP phosphoribosyltransferase 1, chloroplastic		
Niben101Ctg07470g00002.1	sp|Q9LJI9|PP260_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf03085g03003.1	sp|Q8LPR5|TCP4_ARATH	*-*-	Transcription factor TCP4	IPR005333 (Transcription factor, TCP)	
Niben101Scf03412g03011.1	sp|Q7MJM9|Y2132_VIBVY	--*-	UPF0208 membrane protein VV2132		
Niben101Scf06221g04008.1	gb|AIE42546.1|	***-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf00151g06005.1	sp|Q5M9Q1|NKAPL_HUMAN	*-*-	NKAP-like protein	IPR009269 (Protein of unknown function DUF926)	
Niben101Scf08293g02010.1	sp|Q43383|ACCH5_ARATH	*-*-	1-aminocyclopropane-1-carboxylate oxidase homolog 5	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf04099g05001.1			Unknown protein		
Niben101Scf00415g03016.1			Unknown protein		
Niben101Scf03362g05005.1	sp|Q9CAL2|CRK3_ARATH	*-*-	Cysteine-rich receptor-like protein kinase 3	IPR002902 (Gnk2-homologous domain)	
Niben101Scf06849g00011.1	sp|A4YKD8|ATPA_BRASO	****	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00390g01010.1	sp|Q96471|DCAM_IPONI	****	S-adenosylmethionine decarboxylase proenzyme	IPR001985 (S-adenosylmethionine decarboxylase), IPR012511 (S-adenosyl-l-methionine decarboxylase leader peptide), IPR016067 (S-adenosylmethionine decarboxylase, core), IPR018167 (S-adenosylmethionine decarboxylase subgroup)	GO:0004014 (adenosylmethionine decarboxylase activity), GO:0006597 (spermine biosynthetic process), GO:0008295 (spermidine biosynthetic process)
Niben101Scf02842g01018.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03930g03002.1	sp|Q65KJ5|FOSB_BACLD	-**-	Metallothiol transferase FosB	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf00853g04006.1	ref|XP_002525274.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37102.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11953g03006.1	sp|P27898|MYBP_MAIZE	*-*-	Myb-related protein P	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05617g01018.1	sp|C8XAR0|ARC_NAKMY	--*-	Proteasome-associated ATPase	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01033g01001.1	ref|XP_010100650.1|	*-*-	Glucan endo-1,3-beta-glucosidase 3 [Morus notabilis] gb|EXC44994.1| Glucan endo-1,3-beta-glucosidase 3 [Morus notabilis]		
Niben101Scf04122g04014.1	sp|P0C5A3|DPNP_ORYSA	***-	3'(2'),5'-bisphosphate nucleotidase	IPR000760 (Inositol monophosphatase)	GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf02911g04009.1			Unknown protein		
Niben101Scf08078g02001.1	AT1G75670.1	*-*-	DNA-directed RNA polymerases LENGTH=196		
Niben101Scf07399g00001.1			Unknown protein		
Niben101Scf04692g00018.1	sp|A9B415|RL2_HERA2	*-**	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit), GO:0016740 (transferase activity)
Niben101Scf00761g07020.1	sp|O23116|EIL3_ARATH	*-*-	ETHYLENE INSENSITIVE 3-like 3 protein		
Niben101Scf09599g00007.1	sp|C4LIU5|EFP_CORK4	--*-	Elongation factor P		
Niben101Scf13523g00009.1	sp|Q2QQS5|CCT14_ORYSJ	*-**	Cyclin-T1-4	IPR015429 (Cyclin C/H/T/L)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0019901 (protein kinase binding)
Niben101Scf06848g08006.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05336g02001.1	AT4G02030.2	***-	Vps51/Vps67 family (components of vesicular transport) protein LENGTH=805		
Niben101Scf06091g07021.1	sp|Q27GK7|TPR4_ARATH	*-*-	Topless-related protein 4	IPR006595 (CTLH, C-terminal LisH motif)	
Niben101Scf08462g01016.1	gb|AFV66580.1|	*-*-	LSG [Saccharum hybrid cultivar]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf04102g00007.1	sp|Q9FIX3|PP407_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01463g08015.1	sp|Q84K00|NAC78_ARATH	*-*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10678g00010.1	sp|Q8XS05|METE_RALSO	*-**	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	IPR002629 (Cobalamin-independent methionine synthase MetE, C-terminal/archaeal), IPR013215 (Cobalamin-independent methionine synthase MetE, N-terminal)	GO:0003871 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity), GO:0008270 (zinc ion binding), GO:0008652 (cellular amino acid biosynthetic process), GO:0009086 (methionine biosynthetic process)
Niben101Scf10990g00014.1	AT3G45640.1	****	mitogen-activated protein kinase 3 LENGTH=370	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01427g02006.1	sp|P54729|NUB1_MOUSE	*-*-	NEDD8 ultimate buster 1	IPR009060 (UBA-like)	GO:0005515 (protein binding)
Niben101Scf05133g03004.1	AT1G03590.1	***-	Protein phosphatase 2C family protein LENGTH=462	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf07253g00002.1			Unknown protein		
Niben101Scf04775g00004.1	sp|Q54Q31|PHB2_DICDI	***-	Prohibitin-2	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf00337g08001.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf11706g00008.1	sp|Q9FIB6|PS12A_ARATH	***-	26S proteasome non-ATPase regulatory subunit 12 homolog A	IPR000717 (Proteasome component (PCI) domain)	GO:0005515 (protein binding)
Niben101Scf13843g00018.1	AT4G39860.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=299	IPR025131 (Domain of unknown function DUF4057)	
Niben101Scf03047g01019.1	gb|KEH28964.1|	-**-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf08050g00012.1	sp|Q9FE67|ERF80_ARATH	*-**	Ethylene-responsive transcription factor 9	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07516g02001.1	sp|Q94BQ2|PRS8B_ARATH	*-*-	26S protease regulatory subunit 8 homolog B	IPR003959 (ATPase, AAA-type, core), IPR007330 (MIT), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Ctg14642g00001.1	sp|Q39459|MT2_CICAR	***-	Metallothionein-like protein 2	IPR000347 (Metallothionein, family 15, plant)	GO:0046872 (metal ion binding)
Niben101Scf02228g04005.1	sp|Q9M0X9|4CLL7_ARATH	***-	4-coumarate--CoA ligase-like 7	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf18879g01006.1	sp|P92934|AAP6_ARATH	*-*-	Amino acid permease 6	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf03461g02005.1	gb|KEH30806.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00571g04013.1	ref|NP_001061987.1|	***-	product [Oryza sativa Japonica Group]	IPR006904 (Protein of unknown function DUF716 (TMEM45))	
Niben101Scf03488g12009.1			Unknown protein		
Niben101Scf08664g00024.1	sp|Q9LQF2|CINV1_ARATH	--*-	Alkaline/neutral invertase CINV1	IPR024746 (Glycosyl hydrolase family 100)	GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf01316g02007.1	sp|Q608N7|SYL_METCA	--*-	Leucine--tRNA ligase		
Niben101Scf01926g00004.1	ref|XP_002525250.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37216.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05692g07002.1	ref|XP_002885363.1|	****	calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata] gb|EFH61622.1| calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata]	IPR000261 (EPS15 homology (EH)), IPR011992 (EF-hand domain pair), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005525 (GTP binding)
Niben101Scf00348g08003.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00663g04008.1	gb|ABX46134.1|	--*-	blight-associated protein P12, partial [Citrus unshiu]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf04499g00008.1	AT3G12920.1	****	SBP (S-ribonuclease binding protein) family protein LENGTH=335	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06883g01010.1	sp|Q8LGG8|USPAL_ARATH	*-**	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf03648g04015.1	sp|Q8SRB0|GBLP_ENCCU	--**	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00864g01007.1	sp|A7FHJ7|MDTK_YERP3	*-*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00288g07005.1	AT2G30160.1	***-	Mitochondrial substrate carrier family protein LENGTH=331	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf05118g06011.1	sp|Q0WMJ8|SIPL4_ARATH	****	Signal peptide peptidase-like 4	IPR003137 (Protease-associated domain, PA), IPR006639 (Presenilin/signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf05158g01041.1	AT1G15550.1	*-*-	gibberellin 3-oxidase 1 LENGTH=358	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03548g01001.1	AT1G01630.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=255	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Ctg07402g00001.1	sp|Q8W3M6|UBCP_ARATH	*-*-	Ubiquitin-like domain-containing CTD phosphatase	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf07882g01001.1	sp|Q39204|MYC2_ARATH	*-*-	Transcription factor MYC2	IPR025610 (Transcription factor MYC/MYB N-terminal)	
Niben101Scf11389g01019.1	sp|Q9ZW24|GSTU7_ARATH	***-	Glutathione S-transferase U7	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf02294g02001.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05822g05011.1	AT5G58760.1	****	damaged DNA binding 2 LENGTH=557	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00199g05008.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf10277g00009.1	sp|P48601|PRS4_DROME	*-*-	26S protease regulatory subunit 4	IPR003959 (ATPase, AAA-type, core), IPR005938 (AAA ATPase, CDC48 family), IPR009010 (Aspartate decarboxylase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029067 (CDC48 domain 2-like)	GO:0005524 (ATP binding), GO:0016787 (hydrolase activity)
Niben101Scf06222g02001.1	sp|O65420|VAL3_ARATH	***-	B3 domain-containing transcription factor VAL3	IPR011124 (Zinc finger, CW-type), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf02971g05019.1	gb|ABF97305.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf02631g01014.1	gb|ABA95265.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf02241g00013.1	sp|O49621|MLO1_ARATH	***-	MLO-like protein 1	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf01697g06006.1	tpg|DAA39007.1|	*-*-	TPA: hypothetical protein ZEAMMB73_811988 [Zea mays]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf02590g00010.1	AT5G12300.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=374	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01986g02021.1	sp|Q9FNA2|PAO1_ARATH	***-	Polyamine oxidase 1	IPR001613 (Flavin amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06684g04001.1	gb|AES62418.2|	***-	membrane-associated kinase regulator-like protein, putative [Medicago truncatula]		
Niben101Scf01606g02015.1	AT5G24620.1	***-	Pathogenesis-related thaumatin superfamily protein LENGTH=420	IPR001938 (Thaumatin)	
Niben101Scf00537g00006.1			Unknown protein		
Niben101Scf04217g02012.1	sp|Q9FWX2|NAC7_ARATH	***-	NAC domain-containing protein 7	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01623g13002.1	AT1G02660.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=713	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf02706g04007.1	AT4G32090.1	***-	Beta-1,3-N-Acetylglucosaminyltransferase family protein LENGTH=124		
Niben101Scf04708g00011.1	AT5G64740.1	****	cellulose synthase 6 LENGTH=1084	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf04316g10008.1	AT5G67200.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=669	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02575g01001.1	AT3G50210.1	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=332	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf04514g02023.1	AT1G05840.1	*-*-	Eukaryotic aspartyl protease family protein LENGTH=485	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05902g00001.1			Unknown protein		
Niben101Scf00214g00009.1	sp|Q2IIW6|LIPA_ANADE	****	Lipoyl synthase	IPR003698 (Lipoyl synthase)	GO:0003824 (catalytic activity), GO:0009107 (lipoate biosynthetic process), GO:0016992 (lipoate synthase activity), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf06106g01018.1	AT4G35070.1	****	SBP (S-ribonuclease binding protein) family protein LENGTH=265	IPR001841 (Zinc finger, RING-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00920g06003.1	sp|Q54KL5|WDR5_DICDI	*-*-	WD repeat-containing protein 5 homolog	IPR006594 (LisH dimerisation motif), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05749g00011.1			Unknown protein		
Niben101Scf03694g08010.1	sp|Q5E930|SLAH1_ARATH	****	S-type anion channel SLAH1	IPR004695 (Voltage-dependent anion channel)	GO:0006873 (cellular ion homeostasis), GO:0008308 (voltage-gated anion channel activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00487g01005.1	sp|Q8CGC6|RBM28_MOUSE	*-**	RNA-binding protein 28	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01150g05007.1	sp|Q39117|TGT2_ARATH	*-*-	Trihelix transcription factor GT-2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06221g00006.1	sp|Q0WPQ2|ETR2_ARATH	***-	Ethylene receptor 2	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0016020 (membrane)
Niben101Scf03515g00086.1			Unknown protein		
Niben101Scf00410g02004.1	ref|WP_025895090.1|	*-*-	MULTISPECIES: hypothetical protein [Prochlorococcus]	IPR021659 (Protein of unknown function DUF3252)	
Niben101Scf05486g01015.1	sp|Q8LEJ6|FLA11_ARATH	*-*-	Fasciclin-like arabinogalactan protein 11	IPR000782 (FAS1 domain)	
Niben101Scf02893g00001.1	sp|Q9SBL5|CHS4_SORBI	***-	Chalcone synthase 4	IPR011141 (Polyketide synthase, type III), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0009058 (biosynthetic process), GO:0016746 (transferase activity, transferring acyl groups), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf06551g00019.1	AT4G39700.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=158	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf03985g04028.1	sp|Q84MC7|PYL9_ARATH	***-	Abscisic acid receptor PYL9	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf05044g00017.1	AT1G80000.1	***-	CASC3/Barentsz eIF4AIII binding LENGTH=605	IPR018545 (Btz domain)	
Niben101Scf09191g01004.1	sp|Q54Q31|PHB2_DICDI	*-*-	Prohibitin-2	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf01102g00009.1	AT5G07030.1	***-	Eukaryotic aspartyl protease family protein LENGTH=455	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02175g02002.1	AT1G76240.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=308	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf06149g00020.1	sp|Q9ZP54|PARP1_ARATH	***-	Poly [ADP-ribose] polymerase 1	IPR008288 (NAD+ ADP-ribosyltransferase)	GO:0003677 (DNA binding), GO:0003950 (NAD+ ADP-ribosyltransferase activity), GO:0005634 (nucleus), GO:0006471 (protein ADP-ribosylation), GO:0008270 (zinc ion binding), GO:0051287 (NAD binding)
Niben101Scf04640g03006.1	AT2G43040.1	***-	tetratricopeptide repeat (TPR)-containing protein LENGTH=704	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07969g01022.1	AT5G35810.1	***-	Ankyrin repeat family protein LENGTH=347	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	
Niben101Scf00897g02016.1	AT3G14410.1	***-	Nucleotide/sugar transporter family protein LENGTH=340		
Niben101Scf09310g02003.1	AT2G40860.1	****	protein kinase family protein / protein phosphatase 2C ( PP2C) family protein LENGTH=658	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR011009 (Protein kinase-like domain)	GO:0003824 (catalytic activity), GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01956g12018.1	sp|Q8LDC8|ERF92_ARATH	****	Ethylene-responsive transcription factor 1B	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05649g00022.1	AT4G19420.1	***-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01221g06002.1	sp|Q5BPS3|DOR_ARATH	--*-	F-box protein DOR		
Niben101Scf02572g02024.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf10343g01009.1	sp|P46279|RPB7_SOYBN	--*-	DNA-directed RNA polymerase II subunit RPB7	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Ctg12976g00003.1	AT1G29510.1	***-	SAUR-like auxin-responsive protein family LENGTH=143	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03468g02004.1	ref|NP_001031794.1|	--*-	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gb|AAV66092.1| [Arabidopsis thaliana] gb|AAX12888.1| [Arabidopsis thaliana] gb|AEE86617.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana]		
Niben101Scf04407g00018.1	AT5G62540.1	***-	ubiquitin-conjugating enzyme 3 LENGTH=150	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf13469g00003.1	sp|Q8IVE3|PKHH2_HUMAN	--*-	Pleckstrin homology domain-containing family H member 2		
Niben101Scf08330g00012.1	dbj|BAD99418.1|	*-**	acyl-transferase [Capsicum annuum]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04119g01023.1	sp|Q62377|U2AFM_MOUSE	*-*-	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2	IPR009145 (U2 auxiliary factor small subunit), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0046872 (metal ion binding)
Niben101Scf07303g00002.1	ref|XP_002523770.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF38619.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02346g01001.1	AT4G19120.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=600	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf05360g00006.1	sp|B4JBC4|MOCS3_DROGR	*-*-	Adenylyltransferase and sulfurtransferase MOCS3	IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity)
Niben101Scf07007g01015.1	AT4G27430.1	***-	COP1-interacting protein 7 LENGTH=1058		
Niben101Scf04933g01011.1	emb|CDX75752.1|	***-	BnaC03g38350D [Brassica napus]		
Niben101Scf04133g00001.1	gb|ADV29953.1|	***-	MYB transcription factor MIXTA-like 8 protein, partial [Erythranthe guttata]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02433g03006.1	sp|Q55BV5|PRS4_DICDI	*-*-	26S protease regulatory subunit 4 homolog	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf11709g01021.1	emb|CDY34602.1|	***-	BnaC08g41610D [Brassica napus]		
Niben101Scf01534g04009.1	sp|Q9CRD2|EMC2_MOUSE	***-	ER membrane protein complex subunit 2	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01107g00013.1	AT3G19895.1	***-	RING/U-box superfamily protein LENGTH=554	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf06203g02008.1	sp|Q118K5|CCS1_TRIEI	***-	Cytochrome c biogenesis protein CcsB	IPR007816 (ResB-like domain), IPR023494 (Cytochrome c biogenesis protein Ccs1/CcsB)	
Niben101Scf09644g00016.1	sp|Q9LL85|WHY1_SOLTU	****	Single-stranded DNA-binding protein WHY1, chloroplastic	IPR013742 (Plant transcription factor)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01189g04015.1	AT1G65820.3	*-*-	microsomal glutathione s-transferase, putative LENGTH=194	IPR023352 (Membrane associated eicosanoid/glutathione metabolism-like domain)	
Niben101Scf03975g01013.1			Unknown protein		
Niben101Scf02131g00004.1	sp|P0DI70|CSPL2_GINBI	***-	CASP-like protein 5A1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf02569g02008.1	emb|CDX74734.1|	***-	BnaA05g04800D [Brassica napus]	IPR009902 (Protein of unknown function DUF1442), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00811g08002.1			Unknown protein		
Niben101Scf07445g00003.1	sp|B1L7Q0|EF2_KORCO	*-*-	Elongation factor 2	IPR000640 (Translation elongation factor EFG, V domain), IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR009022 (Elongation factor G, III-V domain), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf00613g02006.1	gb|AAS91798.1|	--**	Ulp1-like peptidase [Cucumis melo] gb|AAU04774.1| Ulp1 peptidase-like [Cucumis melo]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf03210g00015.1	ref|NP_001063242.1|	***-	product [Oryza sativa Japonica Group]	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf11737g00001.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00568g04056.1			Unknown protein		
Niben101Scf00715g00003.1	sp|Q9FJJ4|FB298_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02413g01014.1	sp|Q10QH3|CSPLL_ORYSJ	***-	CASP-like protein	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf05601g00019.1	sp|Q9SVS1|BGL47_ARATH	***-	Beta-glucosidase 47	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04119g01022.1	sp|Q4JC00|HELS_SULAC	*-**	ATP-dependent DNA helicase Hel308	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR016438 (RNA helicase, ATP-dependent, SK12/DOB1), IPR025696 (rRNA-processing arch domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf07792g02023.1	sp|Q94KB9|MLO3_ARATH	*-*-	MLO-like protein 3	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf01795g09001.1	sp|Q5PNY6|PUB21_ARATH	***-	U-box domain-containing protein 21	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf16733g01017.1	sp|Q5BPF3|BASL_ARATH	***-	Protein BREAKING OF ASYMMETRY IN THE STOMATAL LINEAGE		
Niben101Scf02111g20008.1	sp|E3P6N8|CYT_PSEAU	--*-	Cystatin	IPR000010 (Proteinase inhibitor I25, cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf02451g06022.1	sp|O61660|TOP3_CAEEL	*-**	DNA topoisomerase 3	IPR000380 (DNA topoisomerase, type IA), IPR023405 (DNA topoisomerase, type IA, core domain)	GO:0003677 (DNA binding), GO:0003916 (DNA topoisomerase activity), GO:0003917 (DNA topoisomerase type I activity), GO:0006265 (DNA topological change)
Niben101Scf07365g00009.1	ref|NP_001044366.2|	--*-	[Oryza sativa Japonica Group] dbj|BAF06280.2| [Oryza sativa Japonica Group]		
Niben101Scf16258g02004.1	sp|O65740|DEF2_CAPAN	--*-	Defensin J1-2		
Niben101Scf04623g02004.1	sp|Q3T106|SRSF7_BOVIN	*-*-	Serine/arginine-rich splicing factor 7	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07896g03007.1	ref|NP_174156.1|	--*-	receptor like protein 4 [Arabidopsis thaliana] gb|AEE30960.1| receptor like protein 4 [Arabidopsis thaliana]		
Niben101Scf01294g07005.1	sp|Q4ZWP2|RECX_PSEU2	--*-	Regulatory protein RecX		
Niben101Scf05234g00004.1	AT3G45670.1	*-**	Protein kinase superfamily protein LENGTH=379	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08568g00001.1			Unknown protein		
Niben101Scf08351g06003.1	ref|XP_003620488.1|	*-*-	Kinesin [Medicago truncatula]		
Niben101Scf03227g05026.1			Unknown protein	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf02139g04018.1	AT3G09860.1	***-	unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=98		
Niben101Scf00212g03032.1	AT3G28740.1	*-*-	Cytochrome P450 superfamily protein LENGTH=509	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09242g02001.1	ref|NP_001149203.1|	***-	seed specific protein Bn15D1B [Zea mays] gb|ACG34551.1| seed specific protein Bn15D1B [Zea mays]		
Niben101Scf03239g05010.1	sp|Q99614|TTC1_HUMAN	*-*-	Tetratricopeptide repeat protein 1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Ctg14038g00004.1	AT4G00730.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=802	IPR002913 (START domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf17478g00008.1	AT3G44260.1	***-	Polynucleotidyl transferase, ribonuclease H-like superfamily protein LENGTH=280	IPR006941 (Ribonuclease CAF1), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Scf01066g05012.1	sp|Q9NZC9|SMAL1_HUMAN	*-*-	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf03088g03004.1	sp|Q9Y580|RBM7_HUMAN	--**	RNA-binding protein 7	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01671g04007.1	AT3G17510.1	*-**	CBL-interacting protein kinase 1 LENGTH=444	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00085g02001.1	AT3G44510.2	***-	alpha/beta-Hydrolases superfamily protein LENGTH=325	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf12266g03001.1	sp|Q02096|PGLR_PERAE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06252g01020.1	sp|Q5RBU7|PCP_PONAB	****	Lysosomal Pro-X carboxypeptidase	IPR008758 (Peptidase S28), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf02160g06069.1	sp|Q89J87|RL2_BRADU	--*-	50S ribosomal protein L2	IPR008991 (Translation protein SH3-like domain)	
Niben101Scf05411g02003.1	AT1G75710.1	*-*-	C2H2-like zinc finger protein LENGTH=462	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf14958g00006.1	sp|A7SBF0|INT9_NEMVE	*-**	Integrator complex subunit 9 homolog	IPR001279 (Beta-lactamase-like), IPR027074 (Integrator complex subunit 9)	GO:0016180 (snRNA processing), GO:0032039 (integrator complex)
Niben101Scf05246g01010.1	sp|O70481|UBR1_MOUSE	*-*-	E3 ubiquitin-protein ligase UBR1	IPR003126 (Zinc finger, N-recognin), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf10947g02007.1	AT1G04780.1	***-	Ankyrin repeat family protein LENGTH=664	IPR020683 (Ankyrin repeat-containing domain), IPR021832 (Ankyrin repeat domain-containing protein 13)	GO:0005515 (protein binding)
Niben101Scf10482g01001.1	sp|Q9LSS5|ICR3_ARATH	***-	Interactor of constitutive active ROPs 3		
Niben101Scf04253g03003.1	gb|ABO52944.1|	--*-	semenogelin II precursor [Otolemur garnettii]		
Niben101Scf00149g12022.1	sp|D2TT52|YMDB_CITRI	--*-	O-acetyl-ADP-ribose deacetylase	IPR002589 (Macro domain)	
Niben101Scf00474g01001.1	gb|AAK27717.1|AF356001_1	-**-	PTP-1 [Craterostigma plantagineum]		
Niben101Scf01870g05001.1	emb|CDY21339.1|	--*-	BnaA09g30880D [Brassica napus]		
Niben101Scf00046g07021.1	AT5G55850.2	***-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=130	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf01763g00001.1	emb|CDH61041.1|	****	rab gtpase activator [Lichtheimia corymbifera JMRC:FSU:9682]	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf10937g00001.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf06218g07015.1	sp|Q9SD24|Y3122_ARATH	*-*-	WEB family protein		
Niben101Scf01804g00072.1	ref|XP_002535064.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF27325.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf13141g00010.1			Unknown protein		
Niben101Scf01566g02014.1	AT1G30040.1	***-	gibberellin 2-oxidase LENGTH=341	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf08156g09003.1	sp|Q00451|PRF1_SOLLC	--*-	36.4 kDa proline-rich protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf07152g03001.1	sp|Q42430|ZFP1_WHEAT	***-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf01001g07007.1	gb|AAM18178.1|	***-	anther protein [Nicotiana tabacum]		
Niben101Scf04011g10012.1	sp|Q8GXJ4|GLR34_ARATH	****	Glutamate receptor 3.4	IPR017103 (Ionotropic glutamate receptor, plant), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf04114g02060.1	sp|P0C8K6|RM02_ORYSA	*-*-	60S ribosomal protein L2, mitochondrial		
Niben101Scf00487g03001.1	sp|A2WT96|PLA2_ORYSI	--*-	Phospholipase A1-II 2	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf16566g00004.1	sp|Q9LYW0|Y5325_ARATH	*-*-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	
Niben101Ctg14241g00006.1	sp|Q2PCF1|PDR2_NICPL	*-*-	Pleiotropic drug resistance protein 2	IPR013525 (ABC-2 type transporter)	GO:0016020 (membrane)
Niben101Scf02316g03040.1	sp|P93847|RL10_SOLME	***-	60S ribosomal protein L10	IPR001197 (Ribosomal protein L10e), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10820g01005.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03080g00001.1	sp|O55035|PPIG_RAT	*-**	Peptidyl-prolyl cis-trans isomerase G	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR011990 (Tetratricopeptide-like helical domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0005515 (protein binding), GO:0006457 (protein folding)
Niben101Scf07823g00011.1	gb|ADX62222.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia mexicana]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf05077g00016.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf03648g02002.1	sp|A8Z5X0|MNME_SULMW	--*-	tRNA modification GTPase MnmE	IPR005690 (Chloroplast protein import component Toc86/159), IPR024283 (Domain of unknown function DUF3406, chloroplast translocase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides)
Niben101Scf08640g00010.1	AT1G62500.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=297	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02420g05002.1	AT5G62260.1	*-*-	AT hook motif DNA-binding family protein LENGTH=404	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf11178g01005.1	sp|A1EA25|PSBE_AGRST	***-	Cytochrome b559 subunit alpha	IPR006217 (Photosystem II cytochrome b559, alpha subunit), IPR006241 (Photosystem II cytochrome b559, beta subunit)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf00199g03003.1	ref|XP_002527953.1|	****	nucleotide binding protein, putative [Ricinus communis] gb|EEF34442.1| nucleotide binding protein, putative [Ricinus communis]	IPR009917 (Steroid receptor RNA activator-protein/coat protein complex II, Sec31), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf10314g04028.1	sp|Q9FRS4|PPR22_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00280g02018.1	sp|Q5JTN6|WDR38_HUMAN	--*-	WD repeat-containing protein 38	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00338g06003.1	sp|O04300|UPTG_PEA	***-	Alpha-1,4-glucan-protein synthase [UDP-forming]	IPR004901 (Reversibly glycosylated polypeptide family)	GO:0016866 (intramolecular transferase activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf22811g00016.1	AT3G07440.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=235		
Niben101Scf02381g05008.1	AT5G16140.1	*-**	Peptidyl-tRNA hydrolase family protein LENGTH=240	IPR001328 (Peptidyl-tRNA hydrolase)	GO:0004045 (aminoacyl-tRNA hydrolase activity)
Niben101Scf10900g02007.1	AT5G22510.1	***-	alkaline/neutral invertase LENGTH=617	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf00176g06017.1	sp|Q9V429|THIO2_DROME	***-	Thioredoxin-2	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf20097g00011.1			Unknown protein		
Niben101Scf09365g00036.1	AT1G74740.1	*-**	calcium-dependent protein kinase 30 LENGTH=541	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Ctg16445g00004.1	AT5G02440.1	***-	unknown protein; Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=176		
Niben101Scf02608g01009.1			Unknown protein		
Niben101Scf02401g00010.1	AT3G18215.1	***-	Protein of unknown function, DUF599 LENGTH=244	IPR006747 (Protein of unknown function DUF599)	
Niben101Scf02182g12004.1	sp|O23624|FPF1_ARATH	***-	Flowering-promoting factor 1		
Niben101Scf06969g01018.1	sp|P0CM87|COX19_CRYNB	***-	Cytochrome c oxidase assembly protein COX19	IPR010625 (CHCH)	
Niben101Scf00244g01013.1	AT3G08570.1	***-	Phototropic-responsive NPH3 family protein LENGTH=617	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	
Niben101Scf03804g01024.1	sp|Q1JQ66|S35E3_DANRE	***-	Solute carrier family 35 member E3	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf04220g05014.1	sp|O23044|PER3_ARATH	****	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09363g00010.1	sp|O80341|EF102_ARATH	--**	Ethylene-responsive transcription factor 5	IPR001471 (AP2/ERF domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01847g02002.1	sp|P45434|SSRA_ARATH	***-	Translocon-associated protein subunit alpha	IPR005595 (Translocon-associated protein (TRAP), alpha subunit)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf00735g05005.1	AT2G41870.1	***-	Remorin family protein LENGTH=274	IPR005516 (Remorin, C-terminal)	
Niben101Scf03710g08001.1	ref|XP_003600613.1|	--*-	Zinc finger CCCH domain-containing protein [Medicago truncatula]		
Niben101Scf07015g00012.1	AT3G04470.1	*-*-	Ankyrin repeat family protein LENGTH=640	IPR021832 (Ankyrin repeat domain-containing protein 13)	
Niben101Scf10941g00001.1	ref|XP_003624917.1|	***-	Two-component response regulator ARR1 [Medicago truncatula] gb|ABN09175.1| Homeodomain-related [Medicago truncatula] gb|AES81135.1| MYB-like transcription factor family protein [Medicago truncatula]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03924g01010.1	gb|AAU95288.1|	*-*-	R1 [Solanum tuberosum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf07704g00001.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR001878 (Zinc finger, CCHC-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf00539g07029.1	sp|Q5SR56|HIAL1_HUMAN	***-	Hippocampus abundant transcript-like protein 1	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf08446g00014.1	sp|A9NEX8|NAGB_ACHLI	****	Glucosamine-6-phosphate deaminase	IPR006148 (Glucosamine/galactosamine-6-phosphate isomerase)	GO:0005975 (carbohydrate metabolic process), GO:0006098 (pentose-phosphate shunt), GO:0017057 (6-phosphogluconolactonase activity)
Niben101Scf07438g03002.1	AT2G03430.1	*-*-	Ankyrin repeat family protein LENGTH=240	IPR008962 (PapD-like), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf05414g02026.1	sp|P73248|DHPS_SYNY3	****	Dihydropteroate synthase	IPR000550 (7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK), IPR011005 (Dihydropteroate synthase-like)	GO:0003848 (2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity), GO:0004156 (dihydropteroate synthase activity), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0042558 (pteridine-containing compound metabolic process), GO:0044237 (cellular metabolic process)
Niben101Scf00799g01007.1	AT1G21710.1	****	8-oxoguanine-DNA glycosylase 1 LENGTH=365	IPR011257 (DNA glycosylase), IPR012904 (8-oxoguanine DNA glycosylase, N-terminal), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal)	GO:0003684 (damaged DNA binding), GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0006289 (nucleotide-excision repair), GO:0008534 (oxidized purine nucleobase lesion DNA N-glycosylase activity)
Niben101Scf04271g00003.1	sp|O82256|COL13_ARATH	****	Zinc finger protein CONSTANS-LIKE 13	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf20493g00010.1	emb|CDY06711.1|	-**-	BnaA10g04900D [Brassica napus]		
Niben101Scf07314g02007.1	AT5G46060.1	***-	Protein of unknown function, DUF599 LENGTH=248	IPR006747 (Protein of unknown function DUF599)	
Niben101Scf10298g02005.1	sp|Q9DCD2|SYF1_MOUSE	***-	Pre-mRNA-splicing factor SYF1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Scf09142g00005.1	sp|Q6DKC0|ERL2B_XENLA	***-	Erlin-2-B	IPR001107 (Band 7 protein)	
Niben101Scf00508g00005.1	AT1G50700.1	*-**	calcium-dependent protein kinase 33 LENGTH=521	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04976g00004.1			Unknown protein		
Niben101Scf06467g07005.1	ref|XP_002510079.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52266.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf12903g02008.1	sp|C3MZB8|RL11_SULIA	***-	50S ribosomal protein L11	IPR000911 (Ribosomal protein L11/L12)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06412g04016.1	AT1G02400.1	***-	gibberellin 2-oxidase 6 LENGTH=329	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf04173g00002.1	sp|Q9SGP6|GRXC9_ARATH	***-	Glutaredoxin-C9	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01854g00002.1	sp|Q9SP35|TI172_ARATH	****	Mitochondrial import inner membrane translocase subunit TIM17-2	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	GO:0005744 (mitochondrial inner membrane presequence translocase complex), GO:0006886 (intracellular protein transport), GO:0015450 (P-P-bond-hydrolysis-driven protein transmembrane transporter activity)
Niben101Scf04081g03014.1	AT5G07900.1	****	Mitochondrial transcription termination factor family protein LENGTH=405	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07253g00003.1	sp|F4K5W8|SUS5_ARATH	*-**	Sucrose synthase 5	IPR012820 (Sucrose synthase, plant/cyanobacteria)	GO:0005985 (sucrose metabolic process), GO:0016157 (sucrose synthase activity)
Niben101Scf00983g02002.1	ref|NP_001234838.1|	--*-	alcohol dehydrogenase-like [Solanum lycopersicum] gb|ABR15770.1| putative alcohol dehydrogenase [Solanum lycopersicum]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf08195g06012.1	AT2G42850.1	***-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00262g04006.1	sp|Q9LW48|ERF5_NICSY	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain), IPR017392 (Pathogenesis-related genes transcriptional activator PTI6)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02869g04003.1			Unknown protein		
Niben101Scf03758g01001.1	AT5G05690.1	***-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04073g00006.1	AT3G02030.1	****	transferases, transferring acyl groups other than amino-acyl groups;acyltransferases LENGTH=662	IPR007130 (Diacylglycerol acyltransferase)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf10200g01008.1	sp|Q9LV33|BGL44_ARATH	***-	Beta-glucosidase 44	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03104g03017.1	sp|P62290|ASPM_HYLLA	*-**	Abnormal spindle-like microcephaly-associated protein homolog	IPR000048 (IQ motif, EF-hand binding site), IPR001715 (Calponin homology domain), IPR016024 (Armadillo-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029955 (Abnormal spindle-like microcephaly-associated protein)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0007051 (spindle organization)
Niben101Scf04817g00011.1			Unknown protein		
Niben101Scf01677g02003.1	sp|Q9FGV1|ARFH_ARATH	****	Auxin response factor 8	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf12372g02014.1	ref|WP_026722020.1|	--*-	alpha/beta hydrolase [Fischerella sp. PCC 9431]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00821g08002.1	AT2G04030.1	***-	Chaperone protein htpG family protein LENGTH=780	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf00470g07001.1	sp|P56331|IF1A_ONOVI	*-**	Eukaryotic translation initiation factor 1A	IPR001253 (Translation initiation factor 1A (eIF-1A))	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf05035g01005.1	sp|P25792|CYSP_SCHMA	*-**	Cathepsin B-like cysteine proteinase	IPR000118 (Granulin), IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf08227g00005.1	sp|O35244|PRDX6_RAT	****	Peroxiredoxin-6	IPR012336 (Thioredoxin-like fold), IPR024706 (Peroxiredoxin, AhpC-type)	GO:0016209 (antioxidant activity), GO:0016491 (oxidoreductase activity), GO:0051920 (peroxiredoxin activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00066g00002.1	sp|O81081|LAC2_ARATH	***-	Laccase-2	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00201g00008.1	sp|P40228|CSK2B_ARATH	****	Casein kinase II subunit beta	IPR000704 (Casein kinase II, regulatory subunit)	GO:0005956 (protein kinase CK2 complex), GO:0019887 (protein kinase regulator activity)
Niben101Scf02542g01003.1	ref|XP_003624099.1|	*-*-	Helicase-like protein [Medicago truncatula]	IPR025476 (Helitron helicase-like domain)	
Niben101Scf10364g00003.1	sp|Q3EBI7|FB130_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf08844g03008.1	sp|Q9LYZ4|FBL79_ARATH	*-*-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01848g02002.1	AT2G48070.3	*-*-	resistance to phytophthora 1 LENGTH=201		
Niben101Scf00016g00007.1	sp|O14218|YPI1_SCHPO	*-*-	Type 1 phosphatases regulator ypi1	IPR011107 (Protein phosphatase inhibitor)	
Niben101Scf05932g05010.1	sp|B6JYI7|FEN1_SCHJY	***-	Flap endonuclease 1	IPR002421 (5'-3' exonuclease, N-terminal), IPR006085 (XPG N-terminal), IPR006086 (XPG-I domain), IPR023426 (Flap structure-specific endonuclease), IPR029060 (PIN domain-like)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0004518 (nuclease activity), GO:0006281 (DNA repair), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf12708g02030.1	sp|O80560|IP5PC_ARATH	*-**	Type I inositol 1,4,5-trisphosphate 5-phosphatase 12	IPR000535 (MSP domain), IPR005135 (Endonuclease/exonuclease/phosphatase), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf01240g01008.1	sp|Q6Z2X6|CAS_ORYSJ	***-	Cycloartenol synthase	IPR018333 (Squalene cyclase)	GO:0003824 (catalytic activity), GO:0016866 (intramolecular transferase activity)
Niben101Scf04416g00006.1	sp|Q9FJY7|PP449_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01475g00019.1	sp|P19037|HS181_ARATH	***-	18.1 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf23821g00011.1	ref|XP_002517431.1|	--*-	CLE25, putative [Ricinus communis] gb|EEF44973.1| CLE25, putative [Ricinus communis]		
Niben101Scf00428g02009.1	ref|WP_016706512.1|	*-*-	spermidine synthase [Pseudoalteromonas haloplanktis]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf08670g00032.1	ref|XP_002525142.1|	*-**	calcium ion binding protein, putative [Ricinus communis] gb|EEF37269.1| calcium ion binding protein, putative [Ricinus communis]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf05813g01009.1	AT1G49510.1	*-*-	embryo defective 1273 LENGTH=240		
Niben101Scf03365g05010.1	ref|XP_002526557.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35835.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05159g02002.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01991g03016.1	sp|P46949|FYV8_YEAST	--*-	Protein FYV8		
Niben101Scf00471g00006.1	sp|Q6NDM2|UBIE_RHOPA	****	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	IPR004033 (UbiE/COQ5 methyltransferase), IPR023576 (UbiE/COQ5 methyltransferase, conserved site), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf15124g00003.1	sp|B0SZ62|CLPX_CAUSK	****	ATP-dependent Clp protease ATP-binding subunit ClpX	IPR003959 (ATPase, AAA-type, core), IPR019489 (Clp ATPase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf04713g01003.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03085g03004.1	sp|Q8LPR5|TCP4_ARATH	*-*-	Transcription factor TCP4	IPR005333 (Transcription factor, TCP)	
Niben101Scf08127g12012.1	AT3G25600.1	****	Calcium-binding EF-hand family protein LENGTH=161	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Ctg14401g00002.1	sp|Q9SSQ2|FB55_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf00177g09005.1	sp|Q9XEC7|CRK37_ARATH	*-**	Cysteine-rich receptor-like protein kinase 37	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05710g03035.1	sp|Q9FR53|TOR_ARATH	****	Serine/threonine-protein kinase TOR	IPR009076 (Rapamycin-binding domain), IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain), IPR014009 (PIK-related kinase), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0008144 (drug binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf04905g03007.1	AT3G01750.1	***-	Ankyrin repeat family protein LENGTH=664	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf14210g00010.1	sp|Q5HQ75|ODPB_STAEQ	***-	Pyruvate dehydrogenase E1 component subunit beta	IPR005475 (Transketolase-like, pyrimidine-binding domain), IPR005476 (Transketolase, C-terminal), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04436g02002.1	emb|CDY09944.1|	***-	BnaC08g45070D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf01082g03005.1	sp|Q96299|14339_ARATH	--*-	14-3-3-like protein GF14 mu		
Niben101Scf04889g00020.1	AT5G56840.1	***-	myb-like transcription factor family protein LENGTH=233	IPR001878 (Zinc finger, CCHC-type), IPR009057 (Homeodomain-like)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0008270 (zinc ion binding)
Niben101Scf02025g03007.1	AT2G20990.3	***-	synaptotagmin A LENGTH=579	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01005g04016.1			Unknown protein		
Niben101Scf05239g01011.1	sp|F4IAT2|THOC2_ARATH	*-*-	THO complex subunit 2	IPR021418 (THO complex, subunitTHOC2, C-terminal)	
Niben101Scf08870g02013.1	AT4G23470.1	*-*-	PLAC8 family protein LENGTH=255		
Niben101Scf04206g00007.1	AT5G48850.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=306	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04099g00004.1	sp|P49637|R27A3_ARATH	***-	60S ribosomal protein L27a-3	IPR021131 (Ribosomal protein L18e/L15P)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07608g04004.1	sp|Q9M2V7|AB16G_ARATH	***-	ABC transporter G family member 16	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00160g09012.1	sp|O75132|ZBED4_HUMAN	***-	Zinc finger BED domain-containing protein 4	IPR003656 (Zinc finger, BED-type), IPR008906 (HAT dimerisation domain, C-terminal), IPR012337 (Ribonuclease H-like domain), IPR025525 (hAT-like transposase, RNase-H fold)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf13823g01005.1	sp|Q632I5|MENE_BACCZ	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00436g07002.1	sp|Q5JVG2|ZN484_HUMAN	--*-	Zinc finger protein 484	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf03403g03020.1	AT4G24530.1	***-	O-fucosyltransferase family protein LENGTH=519	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf00573g02015.1	AT5G36670.1	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=1193	IPR008395 (Agenet-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014002 (Tudor-like, plant), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008080 (N-acetyltransferase activity), GO:0008270 (zinc ion binding)
Niben101Scf10476g06005.1	sp|Q9LNC0|PPR16_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00293g07013.1	sp|Q86UK7|ZN598_HUMAN	*-**	Zinc finger protein 598	IPR001841 (Zinc finger, RING-type), IPR015880 (Zinc finger, C2H2-like)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08112g01020.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00509g00007.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf10848g01007.1	AT2G28420.1	***-	Lactoylglutathione lyase / glyoxalase I family protein LENGTH=184	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf01236g02003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03895g01018.1	ref|WP_026101278.1|	*-**	iron ABC transporter substrate-binding protein [Synechococcus sp. PCC 7336]	IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf02063g08002.1	sp|Q9FIC6|GL117_ARATH	***-	Germin-like protein subfamily 1 member 17	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf07699g00007.1	sp|Q9SV13|SUT31_ARATH	****	Sulfate transporter 3.1	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00894g01011.1	sp|P40227|TCPZ_HUMAN	***-	T-complex protein 1 subunit zeta	IPR000308 (14-3-3 protein), IPR002423 (Chaperonin Cpn60/TCP-1), IPR023410 (14-3-3 domain), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0019904 (protein domain specific binding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf11370g01008.1	ref|XP_002528223.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF34156.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07672g00019.1	sp|Q9STF0|LRKS3_ARATH	****	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf16608g00005.1	sp|B2LMI2|RPOC2_GUIAB	*-*-	DNA-directed RNA polymerase subunit beta''	IPR001865 (Ribosomal protein S2), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07259g00008.1			Unknown protein		
Niben101Scf10811g00005.1	emb|CDY71053.1|	***-	BnaCnng71110D [Brassica napus]		
Niben101Scf01818g03019.1	sp|Q39013|NAC2_ARATH	***-	NAC domain-containing protein 2	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06791g00001.1	sp|Q3E7D0|NAT12_ARATH	****	Nucleobase-ascorbate transporter 12	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf06189g04007.1	sp|Q9M390|PTR1_ARATH	***-	Protein NRT1/ PTR FAMILY 8.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf04091g00025.1	AT4G16563.1	***-	Eukaryotic aspartyl protease family protein LENGTH=499	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06077g03008.1	sp|Q6ENH4|PSAA_ORYNI	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf02564g02002.1			Unknown protein		
Niben101Scf09467g02017.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf00460g03014.1	ref|XP_007024853.1|	--*-	Spc97 / Spc98 family of spindle pole body component, putative isoform 2 [Theobroma cacao] gb|EOY27475.1| Spc97 / Spc98 family of spindle pole body component, putative isoform 2 [Theobroma cacao]		
Niben101Scf01143g01010.1	sp|Q5BPF3|BASL_ARATH	***-	Protein BREAKING OF ASYMMETRY IN THE STOMATAL LINEAGE		
Niben101Ctg13994g00001.1	sp|Q9LW49|ERF4_NICSY	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01763g01001.1	sp|Q9LJI5|VA0D1_ARATH	*-**	V-type proton ATPase subunit d1	IPR002843 (ATPase, V0 complex,  c/d subunit)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf13748g00019.1	sp|Q84W91|C3H32_ARATH	***-	Zinc finger CCCH domain-containing protein 32	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf02824g01001.1			Unknown protein		
Niben101Scf02413g03022.1	sp|Q38857|XTH22_ARATH	*-**	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR010713 (Xyloglucan endo-transglycosylase, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005618 (cell wall), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf00063g01016.1	gb|KEH25033.1|	*-**	plant calmodulin-binding-like protein [Medicago truncatula]	IPR012417 (Calmodulin-binding domain, plant)	GO:0005516 (calmodulin binding)
Niben101Scf09317g01012.1	AT4G16820.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=517	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf15156g01016.1	sp|Q6L545|GID1_ORYSJ	***-	Gibberellin receptor GID1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01020g06010.1	sp|Q8MAV7|PSBE_CUSGR	*-*-	Cytochrome b559 subunit alpha	IPR013081 (Photosystem II cytochrome b559, N-terminal)	GO:0015979 (photosynthesis)
Niben101Scf07580g00006.1	sp|F4I111|MCU6_ARATH	***-	Calcium uniporter protein 6, mitochondrial	IPR006769 (Coiled-coil domain containing protein 109, C-terminal)	
Niben101Scf11774g01004.1	sp|Q9HZP7|ETFA_PSEAE	****	Electron transfer flavoprotein subunit alpha	IPR001308 (Electron transfer flavoprotein, alpha subunit), IPR029035 (DHS-like NAD/FAD-binding domain)	GO:0009055 (electron carrier activity), GO:0050660 (flavin adenine dinucleotide binding)
Niben101Ctg11698g00003.1	sp|Q2PCF1|PDR2_NICPL	*-*-	Pleiotropic drug resistance protein 2	IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated)	GO:0016020 (membrane)
Niben101Scf03184g07004.1	AT2G23945.1	***-	Eukaryotic aspartyl protease family protein LENGTH=458	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02508g06004.1	sp|Q8IZ02|LRC34_HUMAN	*-*-	Leucine-rich repeat-containing protein 34	IPR003590 (Leucine-rich repeat, ribonuclease inhibitor subtype), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf34908g00006.1	AT4G30390.1	***-	unknown protein; Has 22 Blast hits to 22 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=95		
Niben101Scf10488g00008.1	sp|Q9M325|IPCS1_ARATH	***-	Phosphatidylinositol:ceramide inositolphosphotransferase 1	IPR025749 (Sphingomyelin synthase-like domain)	
Niben101Scf28761g00003.1	AT4G19420.1	***-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf01784g06006.1	emb|CDX68970.1|	***-	BnaC01g04830D [Brassica napus]	IPR029469 (PAN-4 domain)	
Niben101Scf00470g03014.1	ref|XP_003596751.1|	*-*-	SPA1-like protein [Medicago truncatula] gb|AES67002.1| ubiquitin ligase cop1, putative [Medicago truncatula]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf18731g00014.1	sp|Q9SLD4|ZAT11_ARATH	***-	Zinc finger protein ZAT11		
Niben101Scf03351g02001.1	AT2G01275.1	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=259	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022143 (Protein of unknown function DUF3675)	GO:0008270 (zinc ion binding)
Niben101Scf00022g00008.1	sp|Q02084|A33_PLEWA	--**	Zinc-binding protein A33	IPR001878 (Zinc finger, CCHC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014891 (DWNN domain)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf01115g00002.1	sp|Q9M350|GACP4_ARATH	***-	Gamma-tubulin complex component 4	IPR007259 (Gamma-tubulin complex component protein)	GO:0000226 (microtubule cytoskeleton organization), GO:0000922 (spindle pole), GO:0005815 (microtubule organizing center)
Niben101Scf03029g00002.1	sp|Q5SXM8|DNLZ_HUMAN	*-**	DNL-type zinc finger protein	IPR007853 (Zinc finger, DNL-type), IPR024158 (Mitochondrial import protein TIM15)	GO:0008270 (zinc ion binding)
Niben101Scf01116g01004.1	sp|P06183|PSBR_SOLTU	****	Photosystem II 10 kDa polypeptide, chloroplastic	IPR006814 (Photosystem II PsbR)	GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0042651 (thylakoid membrane)
Niben101Scf12526g00012.1	ref|XP_002521723.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF40710.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf05824g06002.1	ref|XP_002529387.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF32983.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04607g07001.1	AT2G40710.1	*-**	Haemolysin-III related integral membrane protein LENGTH=93	IPR004254 (AdipoR/Haemolysin-III-related)	GO:0016021 (integral component of membrane)
Niben101Ctg06121g00002.1	sp|Q9M0G2|C3H49_ARATH	***-	Zinc finger CCCH domain-containing protein 49	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf01999g05003.1	sp|Q9S7V4|HA22A_ARATH	*-*-	HVA22-like protein a	IPR003604 (Zinc finger, U1-type), IPR004345 (TB2/DP1/HVA22-related protein)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf12932g00018.1	sp|Q9MB46|VATE_CITUN	****	V-type proton ATPase subunit E	IPR002842 (ATPase, V1/A1 complex, subunit E)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf07436g00006.1	sp|A1URA3|FTSH_BARBK	****	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR005936 (Peptidase, FtsH), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf02360g00008.1	sp|Q8BVG4|DPP9_MOUSE	****	Dipeptidyl peptidase 9	IPR002469 (Peptidase S9B, dipeptidylpeptidase IV N-terminal), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane)
Niben101Scf02510g02007.1	AT1G08320.1	****	bZIP transcription factor family protein LENGTH=481	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06280g05020.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf02941g00009.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05534g01011.1	sp|Q5U4K5|TM41B_XENLA	*-*-	Transmembrane protein 41B		
Niben101Scf01293g05005.1	emb|CDY28257.1|	--*-	BnaA01g05920D [Brassica napus]		
Niben101Scf05576g00012.1			Unknown protein		
Niben101Scf03716g03007.1	AT5G01130.1	***-	Protein of unknown function (DUF674) LENGTH=452	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf04316g10007.1	sp|Q9WZ49|FTSH_THEMA	****	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR005936 (Peptidase, FtsH), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf00487g01006.1			Unknown protein		
Niben101Scf02562g03013.1	AT5G11090.1	*-*-	serine-rich protein-related LENGTH=217		
Niben101Scf03396g03006.1	AT2G42850.1	***-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07527g03002.1	sp|Q9FZ87|GH317_ARATH	***-	Indole-3-acetic acid-amido synthetase GH3.17	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf05107g01003.1	sp|O23624|FPF1_ARATH	***-	Flowering-promoting factor 1		
Niben101Scf02688g01023.1	ref|XP_003597479.1|	*-**	Oxidoreductase, putative [Medicago truncatula] gb|AES67730.1| oxidoreductase family, NAD-binding rossmann fold protein [Medicago truncatula]	IPR016040 (NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity)
Niben101Scf19043g00004.1	ref|NP_001058938.1|	***-	product [Oryza sativa Japonica Group]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02772g03006.1	ref|XP_002530388.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF31994.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06702g00003.1	sp|Q8LAZ7|CSN5B_ARATH	*-*-	COP9 signalosome complex subunit 5b		
Niben101Scf08782g02014.1	ref|XP_002515325.1|	--*-	ATP binding protein, putative [Ricinus communis] gb|EEF47309.1| ATP binding protein, putative [Ricinus communis]		
Niben101Scf17204g00002.1	sp|A2YQU8|SLU7_ORYSI	*-*-	Pre-mRNA-splicing factor SLU7		
Niben101Scf01022g03011.1	ref|WP_011434181.1|	****	4Fe-4S ferredoxin [Synechococcus sp. JA-2-3B'a(2-13)] ref|YP_478819.1| (Fe-S)-binding protein [Synechococcus sp. JA-2-3B'a(2-13)] gb|ABD03556.1| iron-sulfur cluster-binding protein [Synechococcus sp. JA-2-3B'a(2-13)]	IPR013283 (ABC transporter ABCE), IPR021039 (Iron-sulphur binding protein LdpA, C-terminal)	GO:0051536 (iron-sulfur cluster binding)
Niben101Scf00457g02015.1	ref|WP_029158163.1|	--*-	dihydrodipicolinate synthase [Peptoclostridium difficile]		
Niben101Scf17186g00001.1	sp|Q9STF0|LRKS3_ARATH	****	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf25547g00008.1	sp|Q8VYK4|NFYB8_ARATH	*-**	Nuclear transcription factor Y subunit B-8	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf04883g00007.1	ref|YP_001152267.1|	*-*-	ORF65d [Pinus koraiensis] gb|ABP35508.1| ORF65d [Pinus koraiensis]		
Niben101Scf01789g02022.1	sp|Q8CCA0|DCNL4_MOUSE	*-*-	DCN1-like protein 4	IPR014764 (Defective-in-cullin neddylation protein)	
Niben101Scf06754g07001.1	sp|Q9M548|DRM2_ARATH	*-**	DNA (cytosine-5)-methyltransferase DRM2	IPR030380 (SAM-dependent methyltransferase DRM)	GO:0006306 (DNA methylation)
Niben101Scf00975g03011.1	sp|Q0CGL5|NACB_ASPTN	*-*-	Nascent polypeptide-associated complex subunit beta	IPR002715 (Nascent polypeptide-associated complex NAC domain)	
Niben101Scf11838g00002.1	ref|XP_001263708.1|	--*-	LysM domain protein [Ne [Neosartorya fischeri NRRL 181]	IPR018392 (LysM domain)	
Niben101Scf03202g13022.1	gb|KEH42602.1|	-***	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf03141g05006.1	AT4G12570.1	*-**	ubiquitin protein ligase 5 LENGTH=873	IPR000569 (HECT)	GO:0004842 (ubiquitin-protein transferase activity)
Niben101Scf01623g10008.1	sp|Q9SY66|FRS11_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 11	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf03170g05004.1	sp|O48626|ZW10_ARATH	*-*-	Centromere/kinetochore protein zw10 homolog	IPR009361 (RZZ complex, subunit Zw10)	GO:0000775 (chromosome, centromeric region), GO:0005634 (nucleus), GO:0007067 (mitotic nuclear division)
Niben101Scf03911g00005.1	sp|Q3C1G9|RPOC2_NICSY	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf00920g05015.1	sp|Q6ICB0|DESI1_HUMAN	***-	Desumoylating isopeptidase 1	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf01756g02013.1	AT4G01240.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=659	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf01701g10013.1	sp|Q67YU0|CKX5_ARATH	****	Cytokinin dehydrogenase 5	IPR016164 (FAD-linked oxidase-like, C-terminal), IPR016170 (Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain)	GO:0003824 (catalytic activity), GO:0009690 (cytokinin metabolic process), GO:0019139 (cytokinin dehydrogenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06674g01011.1	gb|KEH43068.1|	*-*-	breast carcinoma amplified sequence 3 protein [Medicago truncatula]		
Niben101Scf02897g00002.1	AT3G09970.1	*-*-	Calcineurin-like metallo-phosphoesterase superfamily protein LENGTH=309		
Niben101Scf03718g02005.1			Unknown protein		
Niben101Scf00285g11001.1	AT2G36835.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=124		
Niben101Scf00662g00006.1	sp|Q5U5Q3|MEX3C_HUMAN	--**	RNA-binding E3 ubiquitin-protein ligase MEX3C	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00793g06007.1	sp|P0DKC5|HSD1A_ARATH	***-	11-beta-hydroxysteroid dehydrogenase 1A	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01236g02001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02417g01010.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03776g00014.1	gb|ABA96148.1|	***-	expressed protein [Oryza sativa Japonica Group] gb|EAY82578.1| hypothetical protein OsJ_35562 [Oryza sativa Japonica Group]		
Niben101Scf27562g00007.1	sp|Q9SLH0|EIL1_ARATH	*-*-	ETHYLENE INSENSITIVE 3-like 1 protein		
Niben101Scf20010g00001.1	gb|AES63134.2|	***-	lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf01501g01003.1	sp|Q2Y9R4|CTAA_NITMU	*-**	Heme A synthase	IPR003780 (COX15/CtaA family)	GO:0006784 (heme a biosynthetic process), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0055114 (oxidation-reduction process)
Niben101Scf07027g06012.1	AT1G21630.2	****	Calcium-binding EF hand family protein LENGTH=1247	IPR000261 (EPS15 homology (EH)), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding)
Niben101Scf00063g01017.1	emb|CDX91297.1|	*-*-	BnaC02g27080D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf19277g00012.1	sp|Q969T9|WBP2_HUMAN	--*-	WW domain-binding protein 2		
Niben101Scf05467g02004.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021720 (Malectin)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00819g06002.1			Unknown protein		
Niben101Scf10676g01010.1	sp|Q08069|RS8_MAIZE	***-	40S ribosomal protein S8	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02212g00006.1	gb|AES64334.2|	--*-	F-box protein interaction domain protein [Medicago truncatula]	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01323g05008.1	sp|B4TH65|MDTK_SALHS	--*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf06207g01010.1	gb|AGW82777.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia mexicana]		
Niben101Scf14374g00007.1	ref|WP_027627101.1|	--*-	NADH dehydrogenase [[Clostridium] cellobioparum]	IPR012336 (Thioredoxin-like fold)	
Niben101Scf02537g03002.1	sp|A2YNT8|SAPK2_ORYSI	--*-	Serine/threonine-protein kinase SAPK2		
Niben101Scf07073g01002.1	ref|XP_002527227.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35153.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07182g03011.1			Unknown protein		
Niben101Scf06698g03015.1	sp|Q6VAY5|DNAJ_PSEST	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR026894 (DNAJ-containing protein, X-domain)	
Niben101Scf00854g01069.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf06347g04017.1	AT1G69720.1	****	heme oxygenase 3 LENGTH=285	IPR016053 (Haem oxygenase-like), IPR016951 (Haem oxygenase (decyclizing), plant)	GO:0004392 (heme oxygenase (decyclizing) activity), GO:0006788 (heme oxidation), GO:0055114 (oxidation-reduction process)
Niben101Scf00301g04001.1	emb|CCF44831.1|	***-	NADH:ubiquinone oxidoreductase 11.6kD subunit [Colletotrichum higginsianum]	IPR019329 (NADH:ubiquinone oxidoreductase, ESSS subunit)	
Niben101Scf30733g00003.1	dbj|BAM68510.1|	****	cytochrome c biogenesis Fn, partial (mitochondrion) [Oryza sativa Japonica Group]	IPR003569 (Cytochrome c-type biogenesis protein CcbS)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf07018g00003.1	sp|O80443|GDL46_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00196g00003.1	sp|P0CO79|GEM1_CRYNB	****	Mitochondrial Rho GTPase 1	IPR001806 (Small GTPase superfamily), IPR011992 (EF-hand domain pair), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005509 (calcium ion binding), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0005741 (mitochondrial outer membrane), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0019725 (cellular homeostasis)
Niben101Scf06752g00005.1	gb|ABF99235.1|	--**	GRF zinc finger family protein, expressed [Oryza sativa Japonica Group]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf02385g00005.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01385g03001.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02457g01004.1			Unknown protein		
Niben101Scf00592g12003.1	sp|Q688M5|CHI9_ORYSJ	*-**	Chitinase 9	IPR000726 (Glycoside hydrolase, family 19, catalytic), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0006032 (chitin catabolic process), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf04905g03009.1	sp|P43063|CDK1_CANAL	*-**	Cyclin-dependent kinase 1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03104g03018.1	sp|P21187|PABP_DROME	*-**	Polyadenylate-binding protein	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04731g07007.1	sp|Q7FNS4|PSBB_ATRBE	*-**	Photosystem II CP47 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Ctg15983g00001.1	sp|Q01W33|RIMP_SOLUE	--*-	Ribosome maturation factor RimP	IPR003728 (Ribosome maturation factor RimP)	
Niben101Scf07278g00003.1	AT4G33985.1	***-	Protein of unknown function (DUF1685) LENGTH=154	IPR012881 (Protein of unknown function DUF1685)	
Niben101Ctg14522g00003.1	sp|A4FV84|MRT4_BOVIN	***-	mRNA turnover protein 4 homolog		
Niben101Scf12671g00007.1	sp|Q9LPV5|NRT25_ARATH	***-	High affinity nitrate transporter 2.5	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf06221g04009.1	gb|AIE42546.1|	*-*-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf11037g02005.1	AT1G09160.2	*-*-	Protein phosphatase 2C family protein LENGTH=428		
Niben101Scf02688g02007.1	AT5G06850.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=794	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf01942g05021.1	gb|AFZ78530.1|	--*-	aminotransferase [Populus tomentosa]		
Niben101Scf09928g01006.1	AT1G79720.1	*-*-	Eukaryotic aspartyl protease family protein LENGTH=484	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05461g00005.1	sp|Q2QZ80|LAC21_ORYSJ	*-*-	Laccase-21	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf13942g00028.1	sp|C1B027|RL6_RHOOB	***-	50S ribosomal protein L6	IPR000702 (Ribosomal protein L6)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf03412g03010.1			Unknown protein		
Niben101Scf04339g03008.1	tpg|DAA35905.1|	*-*-	TPA: hypothetical protein ZEAMMB73_888269 [Zea mays]	IPR028222 (AP-5 complex subunit zeta-1)	GO:0044599 (AP-5 adaptor complex)
Niben101Scf05720g01006.1	sp|Q9FN94|RLK7_ARATH	--*-	Receptor-like protein kinase		
Niben101Scf03930g03003.1	AT1G52630.1	***-	O-fucosyltransferase family protein LENGTH=439	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf04574g09004.1	AT5G40770.1	***-	prohibitin 3 LENGTH=277	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf00761g07021.1	sp|Q9C5V6|TOP6B_ARATH	****	DNA topoisomerase 6 subunit B	IPR005734 (DNA topoisomerase VI, subunit B)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0006265 (DNA topological change)
Niben101Scf02517g16014.1	sp|P41340|ACT3_LIMPO	***-	Actin-3	IPR004000 (Actin family)	
Niben101Scf06023g03019.1	sp|Q9FY19|PGLR2_JUNAS	--**	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01627g00001.1	ref|XP_002524407.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF38018.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf14070g00004.1	ref|XP_007039713.1|	***-	Dynamin-like 120 kDa protein, putative isoform 1 [Theobroma cacao] gb|EOY24214.1| Dynamin-like 120 kDa protein, putative isoform 1 [Theobroma cacao]		
Niben101Scf01559g02006.1	gb|AFW59200.1|	*-*-	ser/Thr-rich protein T10 in DGCR region [Zea mays]	IPR008551 (Protein of unknown function DUF833)	
Niben101Scf00822g02008.1	emb|CDY63903.1|	*-*-	BnaA01g34680D [Brassica napus]		
Niben101Scf02145g05004.1	AT4G22120.1	***-	ERD (early-responsive to dehydration stress) family protein LENGTH=771	IPR003864 (Domain of unknown function DUF221), IPR027815 (Domain of unknown function DUF4463)	GO:0016020 (membrane)
Niben101Scf10396g01021.1	AT5G47430.1	****	DWNN domain, a CCHC-type zinc finger LENGTH=892	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014891 (DWNN domain)	GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf02511g05004.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf08111g02008.1	sp|P26569|H12_ARATH	--*-	Histone H1.2	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR020478 (AT hook-like)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf07320g00018.1	gb|AAC23765.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf00189g03001.1			Unknown protein		
Niben101Scf00442g10001.1			Unknown protein		
Niben101Scf04102g00008.1	sp|Q9SKU6|PP166_ARATH	--*-	Pentatricopeptide repeat-containing protein At2g20710, mitochondrial		
Niben101Scf05004g04025.1	sp|Q5PPV4|CHAC2_XENLA	***-	Cation transport regulator-like protein 2	IPR006840 (ChaC-like protein), IPR013024 (Butirosin biosynthesis, BtrG-like)	
Niben101Scf05159g02001.1	sp|Q8VE18|SMG8_MOUSE	*-*-	Protein SMG8	IPR019354 (Smg8/Smg9)	GO:0000184 (nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)
Niben101Scf00278g14006.1	sp|Q84P24|4CLL6_ARATH	***-	4-coumarate--CoA ligase-like 6	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf06750g02016.1	ref|NP_001288856.1|	****	mitochondrial outer membrane protein porin 3-like [Brassica rapa] gb|AAS21632.1| voltage-dependent anion-selective channel protein [Brassica rapa]	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0006820 (anion transport), GO:0008308 (voltage-gated anion channel activity), GO:0044070 (regulation of anion transport), GO:0055085 (transmembrane transport)
Niben101Scf01941g00012.1	AT5G53750.1	***-	CBS domain-containing protein LENGTH=408		
Niben101Scf01205g03001.1	sp|F4JLS1|LDL3_ARATH	*-*-	Lysine-specific histone demethylase 1 homolog 3	IPR002937 (Amine oxidase), IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf18643g00018.1	AT3G21270.1	*-*-	DOF zinc finger protein 2 LENGTH=204	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07510g00013.1	AT5G54280.2	****	myosin 2 LENGTH=1220	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf08050g00011.1	emb|CDY32792.1|	*-*-	BnaA10g10570D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf04708g00012.1	emb|CDX87570.1|	*-*-	BnaA07g33030D [Brassica napus]		
Niben101Scf10193g00022.1	gb|AAU90303.2|	***-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf13843g00019.1	AT1G01225.1	*-*-	NC domain-containing protein-related LENGTH=260	IPR000064 (Endopeptidase, NLPC/P60 domain), IPR007053 (LRAT-like domain)	
Niben101Scf03047g01018.1	sp|Q9LQ27|TPS22_ARATH	****	Terpenoid synthase 22	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf02830g02004.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf08519g03010.1	ref|XP_007052064.1|	*-*-	UBX domain-containing protein [Theobroma cacao] gb|EOX96221.1| UBX domain-containing protein [Theobroma cacao]		
Niben101Scf03488g12008.1	sp|Q6EU39|MADS6_ORYSJ	*-**	MADS-box transcription factor 6	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00753g01002.1	emb|CDY65134.1|	-**-	BnaAnng20250D [Brassica napus]		
Niben101Scf18879g01007.1	sp|P92934|AAP6_ARATH	***-	Amino acid permease 6	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf01318g02009.1			Unknown protein		
Niben101Scf00557g03032.1	sp|Q9XTT4|ANI1_CAEEL	--*-	Anillin-like protein 1		
Niben101Scf04260g03015.1	sp|Q9FMU5|UTP18_ARATH	***-	U3 small nucleolar RNA-associated protein 18 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00663g04007.1	sp|P24806|XTH24_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 24	IPR008264 (Beta-glucanase), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf06218g01011.1	sp|C3K1M2|HSCB_PSEFS	--*-	Co-chaperone protein HscB homolog		
Niben101Scf04424g06004.1	ref|XP_007024060.1|	***-	CASC3/Barentsz eIF4AIII binding, putative isoform 3 [Theobroma cacao] gb|EOY26682.1| CASC3/Barentsz eIF4AIII binding, putative isoform 3 [Theobroma cacao]	IPR018545 (Btz domain)	
Niben101Scf04432g03004.1	sp|Q9SLX0|IMA1B_ORYSJ	***-	Importin subunit alpha-1b	IPR002652 (Importin-alpha, importin-beta-binding domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006606 (protein import into nucleus), GO:0008565 (protein transporter activity)
Niben101Scf07817g01017.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10737g00004.1	ref|XP_002517051.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF45214.1| conserved hypothetical protein [Ricinus communis]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf08874g01003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07610g00001.1	sp|O96952|THIO_GEOCY	*-*-	Thioredoxin	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00911g01004.1	sp|Q8LFJ8|RFA2B_ARATH	****	Replication protein A 32 kDa subunit B	IPR014646 (Replication factor A protein 2)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0006310 (DNA recombination)
Niben101Scf01001g07006.1	gb|KEH23507.1|	-**-	Antimicrobial peptide MBP-1 related (LEM1) [Medicago truncatula]		
Niben101Scf09172g00006.1	AT1G47740.1	***-	PPPDE putative thiol peptidase family protein LENGTH=279	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf01697g01005.1	sp|Q5ZA07|C3H41_ORYSJ	*-*-	E3 ubiquitin-protein ligase makorin		
Niben101Scf02287g00010.1	sp|O23090|BH014_ARATH	***-	Transcription factor bHLH14	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf03659g09002.1	emb|CDY45421.1|	*-*-	BnaA07g32010D [Brassica napus]		
Niben101Scf08723g01006.1			Unknown protein		
Niben101Scf00140g02007.1	sp|Q94AG2|SERK1_ARATH	*-*-	Somatic embryogenesis receptor kinase 1	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Scf02077g00005.1	emb|CDX73116.1|	***-	BnaC06g35640D [Brassica napus]	IPR007656 (Zein-binding domain)	
Niben101Scf10732g01007.1	sp|Q9M9M4|CSLD3_ARATH	****	Cellulose synthase-like protein D3	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf00448g15007.1	sp|P0CQ67|RAD5_CRYNB	*-*-	DNA repair protein RAD5	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02248g01016.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC)	GO:0043531 (ADP binding)
Niben101Scf00508g03007.1			Unknown protein		
Niben101Scf00747g04006.1	sp|Q9SR71|TAF12_ARATH	*-**	Transcription initiation factor TFIID subunit 12	IPR009072 (Histone-fold)	GO:0005669 (transcription factor TFIID complex), GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity)
Niben101Scf02891g00007.1	ref|XP_002530829.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF31542.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05151g01012.1	sp|P52174|NDKA1_BOVIN	****	Nucleoside diphosphate kinase A 1	IPR001564 (Nucleoside diphosphate kinase)	GO:0004550 (nucleoside diphosphate kinase activity), GO:0005524 (ATP binding), GO:0006165 (nucleoside diphosphate phosphorylation), GO:0006183 (GTP biosynthetic process), GO:0006228 (UTP biosynthetic process), GO:0006241 (CTP biosynthetic process)
Niben101Scf11684g01003.1			Unknown protein		
Niben101Ctg10266g00003.1	sp|Q9CWI3|BCCIP_MOUSE	*-*-	BRCA2 and CDKN1A-interacting protein	IPR025602 (BCP1 family)	
Niben101Scf07882g01002.1			Unknown protein		
Niben101Scf11389g01018.1	AT1G78240.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=684	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf14799g02010.1	sp|Q9LF33|UGDH3_ARATH	****	UDP-glucose 6-dehydrogenase 3	IPR017476 (UDP-glucose/GDP-mannose dehydrogenase)	GO:0003979 (UDP-glucose 6-dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01290g01013.1	sp|Q5M8G4|LRC40_XENTR	--*-	Leucine-rich repeat-containing protein 40		
Niben101Scf04339g07007.1			Unknown protein		
Niben101Scf02346g01002.1	sp|P38207|APN2_YEAST	--*-	DNA-(apurinic or apyrimidinic site) lyase 2	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf08175g01003.1			Unknown protein		
Niben101Scf04386g04007.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf09321g00005.1	AT5G65590.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=316	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00712g08013.1	sp|Q9SFX2|PUB43_ARATH	***-	U-box domain-containing protein 43	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf03010g01002.1			Unknown protein		
Niben101Scf03817g07012.1	sp|Q63042|ALR_RAT	*-**	FAD-linked sulfhydryl oxidase ALR	IPR017905 (ERV/ALR sulfhydryl oxidase domain)	GO:0016972 (thiol oxidase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05822g05010.1	sp|B5EGX9|YIDC_GEOBB	--*-	Membrane protein insertase YidC		
Niben101Scf05079g00011.1	sp|C9JJH3|U17LA_HUMAN	*-**	Ubiquitin carboxyl-terminal hydrolase 17-like protein 10	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf06064g00009.1	AT4G32250.1	****	Protein kinase superfamily protein LENGTH=611	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06956g00001.1	AT3G07270.1	****	GTP cyclohydrolase I LENGTH=466	IPR001474 (GTP cyclohydrolase I)	GO:0003934 (GTP cyclohydrolase I activity), GO:0005737 (cytoplasm), GO:0046654 (tetrahydrofolate biosynthetic process)
Niben101Scf03643g02017.1	emb|CCQ71668.1|	*-*-	Ycf1 (chloroplast) [Salvia miltiorrhiza]		
Niben101Scf09321g02005.1	AT1G55190.1	***-	PRA1 (Prenylated rab acceptor) family protein LENGTH=189	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf00090g03004.1	sp|Q7XJL2|GLR31_ARATH	*-*-	Glutamate receptor 3.1		
Niben101Scf01320g03007.1	sp|Q9FFI2|ATG5_ARATH	****	Autophagy protein 5	IPR007239 (Autophagy-related protein 5)	GO:0005737 (cytoplasm), GO:0006914 (autophagy)
Niben101Scf10375g01025.1	ref|XP_003614638.1|	***-	Monoglyceride lipase [Medicago truncatula] gb|AES97596.1| alpha/beta-hydrolase superfamily protein [Medicago truncatula]	IPR022742 (Putative lysophospholipase), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03853g01008.1	emb|CBM56257.1|	*-**	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03878g02005.1	sp|Q863I2|OXSR1_PIG	--*-	Serine/threonine-protein kinase OSR1	IPR011009 (Protein kinase-like domain)	GO:0005524 (ATP binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04535g02004.1	sp|A9KDA0|METE_COXBN	--*-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase		
Niben101Scf04038g03012.1	AT3G57190.1	****	peptide chain release factor, putative LENGTH=406	IPR000352 (Peptide chain release factor class I/class II), IPR005139 (Peptide chain release factor), IPR014720 (Double-stranded RNA-binding domain)	GO:0003747 (translation release factor activity), GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf06514g03006.1	AT4G00390.1	*-*-	DNA-binding storekeeper protein-related transcriptional regulator LENGTH=364	IPR007592 (Protein of unknown function DUF573)	
Niben101Scf11337g00010.1	sp|Q9FFB8|CHX3_ARATH	****	Cation/H(+) antiporter 3	IPR006153 (Cation/H+ exchanger), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0006950 (response to stress), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00595g01006.1	AT5G23950.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=219	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01269g13038.1	ref|XP_003621691.1|	*-*-	A subunit of NADH dehydrogenase [Medicago truncatula] gb|AES77909.1| proton-translocating NADH-quinone oxidoreductase, protein [Medicago truncatula]		
Niben101Scf05749g00010.1	sp|Q9FN11|LBD37_ARATH	***-	LOB domain-containing protein 37	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf05201g11005.1	sp|Q94CK9|LRP1_ARATH	***-	Protein LATERAL ROOT PRIMORDIUM 1	IPR007818 (Protein of unknown function DUF702)	
Niben101Scf04489g00003.1	ref|NP_001053190.1|	***-	product [Oryza sativa Japonica Group]	IPR006946 (Protein of unknown function DUF642)	
Niben101Scf02083g03005.1	sp|Q39110|GAOX1_ARATH	***-	Gibberellin 20 oxidase 1	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00571g04014.1			Unknown protein		
Niben101Scf03674g01015.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02389g00015.1	AT3G44850.1	*-**	Protein kinase superfamily protein LENGTH=534	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01066g05010.1			Unknown protein		
Niben101Scf05272g03003.1	sp|Q9SIT7|PP151_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05438g05014.1	sp|A8FF41|GCST_BACP2	****	Aminomethyltransferase	IPR027266 (GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1), IPR028896 (Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA), IPR029043 (Glycine cleavage T-protein/YgfZ, C-terminal domain)	GO:0004047 (aminomethyltransferase activity), GO:0005515 (protein binding), GO:0006546 (glycine catabolic process)
Niben101Scf02210g00001.1	sp|Q43804|OLEO1_PRUDU	--*-	Oleosin 1		
Niben101Scf06936g03009.1	gb|ABF98471.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf01240g04010.1	sp|Q9SH88|RRS1_ARATH	****	Ribosome biogenesis regulatory protein homolog	IPR007023 (Ribosomal biogenesis regulatory protein)	GO:0005634 (nucleus), GO:0042254 (ribosome biogenesis)
Niben101Scf04709g00017.1	sp|Q9FLZ9|PP405_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02953g01001.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00690g03007.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05142g00035.1			Unknown protein		
Niben101Scf10937g00002.1	sp|Q9SJZ2|PER17_ARATH	*-**	Peroxidase 17	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04623g02006.1	AT2G47800.1	***-	multidrug resistance-associated protein 4 LENGTH=1516	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf00864g01006.1	sp|A1JPA1|MDTK_YERE8	*-*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00149g12021.1	sp|Q9M040|PDC4_ARATH	*-*-	Pyruvate decarboxylase 4	IPR012001 (Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain), IPR029061 (Thiamin diphosphate-binding fold)	GO:0030976 (thiamine pyrophosphate binding)
Niben101Scf05118g06010.1	AT5G64010.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=236		
Niben101Scf00046g05014.1	sp|Q2HJI8|RAB8B_BOVIN	***-	Ras-related protein Rab-8B	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf03843g00003.1	sp|Q9XJ60|MAD50_ORYSJ	****	MADS-box transcription factor 50	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07829g01013.1	sp|Q65KJ5|FOSB_BACLD	-**-	Metallothiol transferase FosB	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf02940g00001.1	sp|Q25378|KPC1_LYTPI	*-**	Protein kinase C	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02316g00021.1	sp|Q9LYK9|RS263_ARATH	***-	40S ribosomal protein S26-3	IPR000892 (Ribosomal protein S26e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01237g04017.1	sp|F4IH21|TBL33_ARATH	*-*-	Protein trichome birefringence-like 33	IPR026057 (PC-Esterase)	
Niben101Scf03291g01001.1	AT3G06630.1	****	protein kinase family protein LENGTH=671	IPR000014 (PAS domain), IPR000700 (PAS-associated, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004871 (signal transducer activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00311g03010.1	sp|Q4UKI7|ODO2_RICFE	****	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex	IPR006255 (Dihydrolipoamide succinyltransferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0004149 (dihydrolipoyllysine-residue succinyltransferase activity), GO:0006099 (tricarboxylic acid cycle), GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups), GO:0045252 (oxoglutarate dehydrogenase complex)
Niben101Scf00854g04118.1	sp|Q0BQY6|ATPL_GRABC	*-**	ATP synthase subunit c	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf14394g01040.1	sp|P40024|ARB1_YEAST	****	ABC transporter ATP-binding protein ARB1	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf02581g01014.1	sp|Q9Y394|DHRS7_HUMAN	*-**	Dehydrogenase/reductase SDR family member 7	IPR002347 (Glucose/ribitol dehydrogenase), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01236g01010.1	sp|Q9LRP1|NPS13_ARATH	***-	Novel plant SNARE 13	IPR000727 (Target SNARE coiled-coil domain), IPR005606 (Sec20)	GO:0005515 (protein binding)
Niben101Scf00212g03031.1	sp|Q8VDI9|ALG9_MOUSE	***-	Alpha-1,2-mannosyltransferase ALG9	IPR005599 (GPI mannosyltransferase)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf03264g02013.1	sp|P47445|PARE_MYCGE	*-**	DNA topoisomerase 4 subunit B	IPR001241 (DNA topoisomerase, type IIA), IPR024946 (Arginine repressor C-terminal-like domain)	GO:0003677 (DNA binding), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0006265 (DNA topological change)
Niben101Scf01013g02011.1	gb|AGU36399.1|	--*-	11S globulin precursor, partial [Helianthus annuus]	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf03264g02014.1	sp|Q84TI3|OBE4_ARATH	***-	Protein OBERON 4	IPR004082 (Protein OBERON)	
Niben101Scf03648g02003.1			Unknown protein		
Niben101Scf01983g16029.1	sp|O65355|GGH2_ARATH	****	Gamma-glutamyl hydrolase 2	IPR011697 (Peptidase C26), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003824 (catalytic activity), GO:0006541 (glutamine metabolic process), GO:0008242 (omega peptidase activity), GO:0016787 (hydrolase activity)
Niben101Scf02164g06010.1	sp|Q5ADW3|CAND1_CANAL	--*-	Cullin-associated NEDD8-dissociated protein 1		
Niben101Scf11953g02005.1	ref|XP_007030485.1|	****	Signal transduction histidine kinase isoform 1 [Theobroma cacao] gb|EOY10987.1| Signal transduction histidine kinase isoform 1 [Theobroma cacao]	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily), IPR029016 (GAF domain-like)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0007165 (signal transduction)
Niben101Scf01236g01011.1	sp|Q54LC8|COG7_DICDI	*-**	Conserved oligomeric Golgi complex subunit 7	IPR019335 (Conserved oligomeric Golgi complex subunit 7)	GO:0006886 (intracellular protein transport), GO:0017119 (Golgi transport complex)
Niben101Scf04119g01021.1	ref|YP_002608363.1|	*-*-	PSII 32 kDa protein [Vitis vinifera] emb|CAQ77603.1| PSII 32 kDa protein [Vitis vinifera] gb|ACS15235.1| PSII 32 kDa protein [Vitis vinifera]		
Niben101Scf03293g00004.1	AT2G44300.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=204	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf05799g00003.1	sp|Q9C8Y6|FBD5_ARATH	***-	FBD-associated F-box protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf01999g02002.1	AT2G28085.1	***-	SAUR-like auxin-responsive protein family LENGTH=124	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02420g05001.1	sp|Q9FZ95|PUP3_ARATH	***-	Purine permease 3	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf00568g04055.1	gb|AAW30286.1|	****	cytochrome c biogenesis ccmF [Amborella trichopoda]	IPR003567 (Cytochrome c-type biogenesis protein)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf01500g00011.1	AT1G14890.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=219	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf03679g02007.1	AT3G54190.1	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=467	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf14361g01005.1	ref|NP_001147322.1|	*-**	milkweed pod1 [Zea mays] gb|ACG26785.1| myb-like DNA-binding domain, SHAQKYF class family protein [Zea mays] gb|ACH56977.1| milkweed pod1 [Zea mays] tpg|DAA61335.1| TPA: LOW QUALITY PROTEIN: milkweed pod1 [Zea mays]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00338g06002.1	sp|P0DI12|SA1B1_ARATH	***-	SUMO-activating enzyme subunit 1B-1	IPR016040 (NAD(P)-binding domain)	
Niben101Scf02738g07007.1	sp|Q6NMQ7|GASA6_ARATH	***-	Gibberellin-regulated protein 6	IPR003854 (Gibberellin regulated protein)	
Niben101Scf17237g00001.1	AT3G19580.1	***-	zinc-finger protein 2 LENGTH=273	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf04607g00001.1	gb|AES94526.2|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf01150g05006.1	AT1G76850.1	****	exocyst complex component sec5 LENGTH=1090	IPR016159 (Cullin repeat-like-containing domain), IPR029175 (Exocyst complex component Sec5)	GO:0000145 (exocyst), GO:0006893 (Golgi to plasma membrane transport)
Niben101Scf38617g00001.1	sp|Q11180|WHT1_CAEEL	****	ABC transporter ATP-binding protein/permease wht-1	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf08447g09009.1	sp|Q6EUK7|PUB04_ORYSJ	*-*-	U-box domain-containing protein 4	IPR011990 (Tetratricopeptide-like helical domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf10545g00007.1	sp|P46522|LEA5D_GOSHI	*-*-	Late embryogenesis abundant protein Lea5-D	IPR004926 (Late embryogenesis abundant protein, LEA-5)	GO:0006950 (response to stress)
Niben101Scf07672g00018.1	sp|P56252|ENO_HOMGA	***-	Enolase	IPR000941 (Enolase), IPR029017 (Enolase N-terminal domain-like), IPR029065 (Enolase C-terminal domain-like)	GO:0000015 (phosphopyruvate hydratase complex), GO:0000287 (magnesium ion binding), GO:0004634 (phosphopyruvate hydratase activity), GO:0006096 (glycolytic process)
Niben101Scf01582g00001.1	gb|KEH22373.1|	*-*-	DUF4283 domain protein [Medicago truncatula]		
Niben101Scf01764g02032.1	emb|CDY57850.1|	***-	BnaA07g38810D [Brassica napus]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf16608g00004.1	sp|Q3C1G9|RPOC2_NICSY	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf03385g04011.1	sp|Q1G3M2|LYRM9_ARATH	***-	LYR motif-containing protein	IPR008011 (Complex 1 LYR protein)	
Niben101Scf00046g05013.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf07343g00002.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02118g00004.1	AT1G10940.2	****	Protein kinase superfamily protein LENGTH=371	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04543g00005.1	sp|Q96VN3|NTF2_EMENI	*-**	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf02798g06007.1	sp|Q9SE94|MTHR1_MAIZE	*-**	Methylenetetrahydrofolate reductase 1	IPR003171 (Methylenetetrahydrofolate reductase), IPR029041 (FAD-linked oxidoreductase-like)	GO:0004489 (methylenetetrahydrofolate reductase (NAD(P)H) activity), GO:0006555 (methionine metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf09296g01004.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf00647g02008.1	gb|KEH17052.1|	***-	F-box/RNI/FBD-like domain protein [Medicago truncatula]	IPR006566 (FBD domain)	
Niben101Scf07896g03006.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR025875 (Leucine rich repeat 4)	
Niben101Scf02468g11007.1	sp|Q54JK4|CHMP5_DICDI	-**-	Charged multivesicular body protein 5		
Niben101Scf01847g02001.1	sp|B8BDW1|XCT_ORYSI	***-	Protein XAP5 CIRCADIAN TIMEKEEPER	IPR007005 (XAP5 protein)	GO:0005634 (nucleus)
Niben101Scf01294g07006.1	ref|XP_002515369.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF46818.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf02074g02070.1	ref|XP_002516370.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF45987.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02606g04001.1	gb|ABF96025.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf05827g03011.1	sp|B1KZY3|MTNA_CLOBM	*-*-	Methylthioribose-1-phosphate isomerase	IPR000649 (Initiation factor 2B-related)	GO:0044237 (cellular metabolic process)
Niben101Scf02139g04017.1	sp|Q2HIM5|MMGT_ARATH	***-	Membrane magnesium transporter	IPR018937 (Magnesium transporter)	
Niben101Scf12714g00004.1	sp|Q9KPB2|RNC_VIBCH	-***	Ribonuclease 3	IPR011907 (Ribonuclease III)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0006396 (RNA processing), GO:0016075 (rRNA catabolic process)
Niben101Scf05414g02025.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01646g00010.1	sp|Q39CV8|APT_BURL3	****	Adenine phosphoribosyltransferase	IPR005764 (Adenine phosphoribosyl transferase), IPR029057 (Phosphoribosyltransferase-like)	GO:0003999 (adenine phosphoribosyltransferase activity), GO:0005737 (cytoplasm), GO:0006168 (adenine salvage), GO:0009116 (nucleoside metabolic process)
Niben101Scf02160g06068.1	sp|P73318|RL23_SYNY3	--*-	50S ribosomal protein L23	IPR002541 (Cytochrome c assembly protein), IPR003557 (Cytochrome c-type biogenesis protein CcmC), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf20066g00001.1	AT2G28120.1	***-	Major facilitator superfamily protein LENGTH=577	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf04761g00013.1			Unknown protein		
Niben101Scf03690g00012.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03326g01011.1	AT5G16890.1	***-	Exostosin family protein LENGTH=511	IPR004263 (Exostosin-like)	
Niben101Scf04801g00001.1	AT1G62400.1	****	Protein kinase superfamily protein LENGTH=345	IPR011009 (Protein kinase-like domain), IPR015783 (Serine/threonine-protein kinase HT1, plant)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf20969g00001.1	AT2G35230.1	*-*-	VQ motif-containing protein LENGTH=402	IPR008889 (VQ)	
Niben101Scf00312g00002.1			Unknown protein		
Niben101Scf01763g00002.1	sp|Q9LFH0|AB37G_ARATH	*-*-	ABC transporter G family member 37	IPR013525 (ABC-2 type transporter)	GO:0016020 (membrane)
Niben101Scf08156g08020.1	AT4G34860.1	*-*-	Plant neutral invertase family protein LENGTH=571	IPR024746 (Glycosyl hydrolase family 100)	GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf05183g09013.1	AT1G01470.1	***-	Late embryogenesis abundant protein LENGTH=151	IPR004864 (Late embryogenesis abundant protein, LEA-14), IPR013783 (Immunoglobulin-like fold)	GO:0009269 (response to desiccation)
Niben101Scf04703g03003.1	AT3G60690.1	***-	SAUR-like auxin-responsive protein family LENGTH=170	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02706g04005.1	sp|Q00004|SRP68_CANFA	****	Signal recognition particle subunit SRP68	IPR026258 (Signal recognition particle subunit SRP68)	GO:0005047 (signal recognition particle binding), GO:0005786 (signal recognition particle, endoplasmic reticulum targeting), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0030942 (endoplasmic reticulum signal peptide binding)
Niben101Ctg10421g00001.1	emb|CDY60165.1|	--*-	BnaAnng16590D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf06412g04017.1	sp|Q8SY96|NFU1_DROME	--**	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial	IPR001075 (NIF system FeS cluster assembly, NifU, C-terminal)	GO:0005506 (iron ion binding), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf01221g06003.1	sp|Q9CAN3|SCL28_ARATH	*-*-	Scarecrow-like protein 28	IPR005202 (Transcription factor GRAS)	
Niben101Scf04173g00001.1	AT5G44150.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). LENGTH=355		
Niben101Scf10836g00011.1			Unknown protein		
Niben101Scf00839g01009.1	sp|Q6FQQ6|IF4A_CANGA	*-*-	ATP-dependent RNA helicase eIF4A	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01517g08013.1	ref|XP_002534066.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF28310.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08156g09004.1	sp|Q4IB70|CWC21_GIBZE	*-*-	Pre-mRNA-splicing factor CWC21	IPR013170 (mRNA splicing factor, Cwf21)	
Niben101Scf01804g00073.1			Unknown protein		
Niben101Scf16089g00007.1	sp|Q9LZV3|MAN6_ARATH	***-	Mannan endo-1,4-beta-mannosidase 6	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01521g05003.1	sp|Q42430|ZFP1_WHEAT	--*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf05077g00017.1	gb|AAC72876.1|	--*-	T9E19.2 gene product [Arabidopsis thaliana]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf00985g06001.1	sp|P57735|RAB25_HUMAN	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Ctg14241g00007.1	sp|Q7PC88|AB31G_ARATH	*-*-	ABC transporter G family member 31	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf05692g07003.1	AT4G26810.1	***-	SWIB/MDM2 domain superfamily protein LENGTH=106	IPR003121 (SWIB/MDM2 domain)	GO:0005515 (protein binding)
Niben101Scf00239g01002.1			Unknown protein		
Niben101Scf01382g01004.1	sp|Q76E23|IF4G_ARATH	*-*-	Eukaryotic translation initiation factor 4G	IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf04346g00001.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00176g10002.1	AT4G04900.1	*-*-	ROP-interactive CRIB motif-containing protein 10 LENGTH=156	IPR000095 (CRIB domain)	
Niben101Scf02702g00011.1			Unknown protein		
Niben101Scf00472g07006.1	sp|Q8WU67|ABHD3_HUMAN	*-*-	Abhydrolase domain-containing protein 3	IPR000952 (Uncharacterised protein family UPF0017, hydrolase-like, conserved site), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03798g00001.1	sp|A7IPA4|NUOD_XANP2	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00471g03008.1	gb|KEH26281.1|	***-	plant nuclear matrix protein [Medicago truncatula]	IPR029711 (HAUS augmin-like complex subunit 7-like)	
Niben101Scf04093g00004.1	AT3G08510.1	****	phospholipase C 2 LENGTH=581	IPR001192 (Phosphoinositide phospholipase C family)	GO:0004435 (phosphatidylinositol phospholipase C activity), GO:0005515 (protein binding), GO:0006629 (lipid metabolic process), GO:0007165 (signal transduction), GO:0008081 (phosphoric diester hydrolase activity), GO:0035556 (intracellular signal transduction)
Niben101Scf01150g03006.1	sp|A0AUR5|F188A_DANRE	***-	Protein FAM188A	IPR003903 (Ubiquitin interacting motif), IPR011992 (EF-hand domain pair), IPR025257 (Domain of unknown function DUF4205)	
Niben101Scf16733g01016.1	ref|XP_007045749.1|	--*-	18S pre-rib gar2-related, putative isoform 1 [Theobroma cacao]		
Niben101Scf11178g01004.1	sp|Q8ZSB0|MNTH_NOSS1	****	Divalent metal cation transporter MntH	IPR001046 (NRAMP family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf06677g01012.1	sp|Q0WPZ6|PP158_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf14436g04012.1	AT4G01810.1	*-*-	Sec23/Sec24 protein transport family protein LENGTH=880		
Niben101Scf05845g04008.1			Unknown protein		
Niben101Scf02507g04024.1	AT1G53025.1	*-*-	Ubiquitin-conjugating enzyme family protein LENGTH=543	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf01225g03005.1	gb|AET80686.1|	--*-	spermidine hydroxycinnamoyl transferase [Nicotiana attenuata]		
Niben101Scf04233g00004.1			Unknown protein		
Niben101Scf08578g00010.1	gb|AES78631.2|	*-*-	acting on ester bonds hydrolase [Medicago truncatula]		
Niben101Scf01697g04006.1	sp|Q5FVN2|TM41B_RAT	***-	Transmembrane protein 41B		
Niben101Scf25721g00002.1			Unknown protein		
Niben101Scf07388g00016.1	sp|O23044|PER3_ARATH	****	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg15263g00003.1	AT1G29840.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=263	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04499g03002.1	AT5G45160.1	****	Root hair defective 3 GTP-binding protein (RHD3) LENGTH=834	IPR008803 (RHD3/Sey1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf02929g06122.1	sp|Q2G5N7|ATPA_NOVAD	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf07015g00013.1	AT5G28850.2	****	Calcium-binding EF-hand family protein LENGTH=536	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf04976g00005.1	AT2G35270.1	*-*-	Predicted AT-hook DNA-binding family protein LENGTH=285	IPR005175 (Domain of unknown function DUF296)	
Niben101Ctg15380g00001.1	sp|Q9FZ96|PUP1_ARATH	***-	Purine permease 1	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf05749g02028.1	emb|CDY52413.1|	***-	BnaCnng22340D [Brassica napus]	IPR024738 (Transcriptional coactivator Hfi1/Transcriptional adapter 1)	GO:0070461 (SAGA-type complex)
Niben101Scf07314g02008.1	ref|XP_007025503.1|	*-*-	Elongation factor P-like protein, putative isoform 2 [Theobroma cacao] gb|EOY28125.1| Elongation factor P-like protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf04033g03003.1	sp|Q9FMR1|RGAP1_ARATH	***-	Rho GTPase-activating protein 1	IPR000095 (CRIB domain), IPR008936 (Rho GTPase activation protein)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf05301g00007.1	AT4G03090.1	****	sequence-specific DNA binding;sequence-specific DNA binding transcription factors LENGTH=913	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf04933g00015.1	AT2G31010.1	***-	Protein kinase superfamily protein LENGTH=775		
Niben101Scf02025g03006.1	sp|Q9SCU9|BGA13_ARATH	***-	Beta-galactosidase 13	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf10820g01004.1	sp|Q3E6Q1|PPR32_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf11813g01010.1	ref|XP_003616023.1|	*-*-	Poly(A) RNA polymerase cid14 [Medicago truncatula]		
Niben101Scf04608g05004.1			Unknown protein		
Niben101Scf05645g01004.1	sp|Q8VYT5|FB254_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf01300g06011.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04113g16001.1	sp|Q9FRL5|ZHD5_ARATH	***-	Zinc-finger homeodomain protein 5	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf08195g06011.1	sp|Q9LVD3|PP434_ARATH	--*-	Pentatricopeptide repeat-containing protein At5g57250, mitochondrial		
Niben101Scf00821g08001.1	ref|XP_002311412.1|	*-*-	18S pre-rib gar2 [Populus trichocarpa]		
Niben101Scf11307g00001.1	sp|Q8VY97|Y4213_ARATH	***-	ER membrane protein complex subunit 7 homolog	IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain), IPR019008 (Domain of unknown function DUF2012)	GO:0030246 (carbohydrate binding)
Niben101Scf03878g01003.1	AT3G21690.1	*-*-	MATE efflux family protein LENGTH=506	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf11370g01007.1	sp|Q9QZ23|NFU1_MOUSE	*-*-	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial	IPR014824 (Scaffold protein Nfu/NifU, N-terminal)	
Niben101Scf07121g03008.1	sp|Q9LEH3|PER15_IPOBA	****	Peroxidase 15	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01817g00008.1	AT1G64300.1	*-*-	Protein kinase family protein LENGTH=717	IPR010632 (Domain of unknown function DUF1221)	
Niben101Scf02759g01005.1			Unknown protein		
Niben101Ctg16250g00003.1	AT5G21280.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=302		
Niben101Scf05720g00004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02077g07001.1	sp|O34358|HTRA_BACSU	*-**	Serine protease Do-like HtrA	IPR001940 (Peptidase S1C), IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity), GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf08227g00006.1	AT2G46890.1	*-*-	Protein of unknown function (DUF1295) LENGTH=322	IPR010721 (Protein of unknown function DUF1295)	
Niben101Scf07895g02001.1	sp|O22715|AP1M2_ARATH	****	AP-1 complex subunit mu-2	IPR001392 (Clathrin adaptor, mu subunit), IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf08876g00007.1			Unknown protein		
Niben101Scf02375g10007.1			Unknown protein		
Niben101Scf01848g02003.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02381g05007.1	gb|KEH25359.1|	***-	DUF4378 domain protein [Medicago truncatula]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf13748g00018.1	AT3G62920.1	***-	unknown protein; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=80		
Niben101Scf30375g00002.1	gb|KEH26132.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf07086g00005.1	sp|C4ZI12|SYD_EUBR3	--*-	Aspartate--tRNA ligase		
Niben101Scf04187g00033.1	AT1G68940.3	***-	Armadillo/beta-catenin-like repeat family protein LENGTH=1061	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf09592g00014.1	emb|CDX87272.1|	***-	BnaC09g05870D [Brassica napus]		
Niben101Scf02653g04005.1	sp|Q0WSN2|DAR2_ARATH	***-	Protein DA1-related 2	IPR022087 (Protein DA1 like)	
Niben101Scf04432g06003.1	ref|XP_002516369.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF45986.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11774g01003.1			Unknown protein		
Niben101Scf05827g00011.1	AT5G08160.1	****	serine/threonine protein kinase 3 LENGTH=347	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07790g01007.1	AT4G21750.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=762	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf02508g01012.1	sp|Q9T0H2|SMAP1_ARATH	-**-	Small acidic protein 1		
Niben101Scf04099g05003.1	sp|D7MMW4|CSPLJ_ARALL	*-*-	CASP-like protein 4A2	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf03114g07016.1	AT5G24020.1	****	septum site-determining protein (MIND) LENGTH=326	IPR025501 (ATP binding protein MinD), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000918 (barrier septum site selection), GO:0006200 (ATP catabolic process), GO:0016887 (ATPase activity)
Niben101Scf16215g00005.1	sp|O48723|PLP2_ARATH	***-	Patatin-like protein 2	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf08800g00003.1	sp|Q8W4F0|DAR1_ARATH	*-*-	Protein DA1-related 1		
Niben101Scf00448g21001.1			Unknown protein		
Niben101Scf05011g01019.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf13394g00017.1	ref|WP_007353692.1|	****	MULTISPECIES: hypothetical protein [Kamptonema] emb|CBN54467.1| conserved membrane hypothetical protein [ [[Oscillatoria] sp. PCC 6506]	IPR001727 (Uncharacterised protein family UPF0016)	GO:0016020 (membrane)
Niben101Scf12801g00009.1			Unknown protein		
Niben101Scf02133g10010.1	sp|A7SXK3|TMED_NEMVE	***-	Transmembrane emp24 domain-containing protein	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Ctg16493g00002.1	gb|AAX92969.1|	--*-	Transp [Oryza sativa Japonica Group]	IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf19277g00011.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]		
Niben101Scf03722g00009.1	sp|Q948U0|RBOHA_SOLTU	*-**	Respiratory burst oxidase homolog protein A	IPR011992 (EF-hand domain pair), IPR013130 (Ferric reductase transmembrane component-like domain)	GO:0004601 (peroxidase activity), GO:0005509 (calcium ion binding), GO:0050664 (oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf05343g03003.1	gb|KFB84164.1|	*-*-	alpha/beta hydrolase [Calothrix sp. 336/3]	IPR006050 (DNA photolyase, N-terminal), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02030g01021.1	sp|Q9S7T5|OFP14_ARATH	*-*-	Transcription repressor OFP14		
Niben101Scf00509g00008.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf08724g06013.1			Unknown protein		
Niben101Ctg06260g00001.1	sp|Q49SP5|TPGAS_POGCB	*-**	Germacrene A synthase	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf03882g04001.1	sp|P60406|RK2_AMBTC	*-**	50S ribosomal protein L2, chloroplastic	IPR002171 (Ribosomal protein L2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit), GO:0016740 (transferase activity)
Niben101Scf04817g00012.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000742 (Epidermal growth factor-like domain), IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf06275g03001.1	AT3G18490.1	***-	Eukaryotic aspartyl protease family protein LENGTH=500	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf07663g01001.1	sp|Q8C2L6|T161B_MOUSE	*-*-	Transmembrane protein 161B	IPR019395 (Transmembrane protein 161A/B)	
Niben101Scf02597g05001.1	AT1G21610.3	*-*-	wound-responsive family protein LENGTH=685	IPR014840 (Hpc2-related domain), IPR026949 (Ubinuclein/Yemanuclein)	
Niben101Scf03975g01012.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01180g05008.1	gb|KEH40445.1|	***-	transmembrane protein, putative [Medicago truncatula]	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	
Niben101Scf02063g08001.1	sp|P78968|PPZ_SCHPO	***-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf11802g01008.1	AT5G47750.1	*-**	D6 protein kinase like 2 LENGTH=586	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00613g02007.1	ref|WP_008196576.1|	****	chitin-binding protein [Microcystis sp. T1-4] emb|CCI30484.1| Chlorophyll a synthase [Microcystis sp. T1-4]	IPR000537 (UbiA prenyltransferase family)	GO:0004659 (prenyltransferase activity), GO:0015995 (chlorophyll biosynthetic process), GO:0016021 (integral component of membrane), GO:0046408 (chlorophyll synthetase activity)
Niben101Scf02003g01026.1	sp|O80377|RSSA_DAUCA	*-**	40S ribosomal protein SA	IPR005707 (Ribosomal protein S2, eukaryotic/archaeal), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf02542g01004.1			Unknown protein		
Niben101Scf02160g06094.1	sp|Q9SSM2|MDLL_ARATH	*-*-	(R)-mandelonitrile lyase-like		
Niben101Scf01106g02001.1	sp|O60020|ASPR1_PHARH	--**	Aspartic protease	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06081g04019.1	sp|Q3SRE4|NUOB_NITWN	*-**	NADH-quinone oxidoreductase subunit B	IPR006138 (NADH-ubiquinone oxidoreductase, 20 Kd subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0048038 (quinone binding), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00293g07014.1	AT5G44440.1	****	FAD-binding Berberine family protein LENGTH=533	IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11709g00004.1	gb|AES99834.2|	***-	E3 ubiquitin-protein ligase COP1 [Medicago truncatula]	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04627g05004.1	AT2G23080.1	****	Protein kinase superfamily protein LENGTH=333	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00063g12003.1	gb|KEH33317.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf05706g01003.1	sp|Q7XHI9|BH084_ARATH	*-*-	Transcription factor bHLH84		
Niben101Scf00454g02005.1	AT5G51180.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=357	IPR007751 (Domain of unknown function DUF676, lipase-like), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf08670g00033.1	AT3G15050.1	***-	IQ-domain 10 LENGTH=259	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf02844g09002.1	gb|AHG54973.1|	***-	xyloglucan-specific endoglucanase inhibitor 10 [Solanum tuberosum]	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05566g03004.1	AT1G78290.2	*-**	Protein kinase superfamily protein LENGTH=343	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05582g04001.1	emb|CDY52087.1|	*-*-	BnaCnng21880D [Brassica napus]		
Niben101Scf11235g00008.1	sp|Q6ERS4|CIPKG_ORYSJ	****	CBL-interacting protein kinase 16	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02790g01010.1	sp|Q0UU86|IF4A_PHANO	*-*-	ATP-dependent RNA helicase eIF4A	IPR000629 (ATP-dependent RNA helicase DEAD-box, conserved site), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02508g06003.1			Unknown protein		
Niben101Scf01625g01002.1	AT2G21590.1	****	Glucose-1-phosphate adenylyltransferase family protein LENGTH=523	IPR011831 (Glucose-1-phosphate adenylyltransferase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005978 (glycogen biosynthetic process), GO:0008878 (glucose-1-phosphate adenylyltransferase activity), GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf09387g03016.1	sp|Q11HP9|EFG_CHESB	****	Elongation factor G	IPR004540 (Translation elongation factor EFG/EF2), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006414 (translational elongation)
Niben101Scf03734g01001.1	AT5G36670.1	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=1193	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf20101g00011.1	AT1G66480.1	***-	plastid movement impaired 2 LENGTH=225	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf05044g02021.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf09663g00002.1	sp|Q39204|MYC2_ARATH	*-*-	Transcription factor MYC2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf14012g01025.1	sp|Q56YP2|PI5K1_ARATH	****	Phosphatidylinositol 4-phosphate 5-kinase 1	IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf31913g00001.1	sp|A9B0N4|RS16_HERA2	*-*-	30S ribosomal protein S16	IPR000307 (Ribosomal protein S16), IPR023803 (Ribosomal protein S16 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01115g00001.1	sp|A2Y0J7|RU1A_ORYSI	***-	U1 small nuclear ribonucleoprotein A	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR024888 (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'')	GO:0000166 (nucleotide binding), GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0017069 (snRNA binding)
Niben101Scf07680g03008.1	sp|Q96575|PME22_SOLLC	****	Pectinesterase 2.2	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02124g01018.1	sp|Q07326|PIGF_HUMAN	*-*-	Phosphatidylinositol-glycan biosynthesis class F protein	IPR009580 (GPI biosynthesis protein Pig-F)	GO:0005789 (endoplasmic reticulum membrane), GO:0006506 (GPI anchor biosynthetic process), GO:0016021 (integral component of membrane)
Niben101Scf02929g04058.1	AT2G07749.1	*-*-	Mitovirus RNA-dependent RNA polymerase LENGTH=246	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf05801g00015.1	AT1G55190.1	*-*-	PRA1 (Prenylated rab acceptor) family protein LENGTH=189	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf11401g00004.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05173g03011.1	AT2G44830.1	****	Protein kinase superfamily protein LENGTH=765	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06436g05016.1			Unknown protein		
Niben101Scf02085g19010.1	sp|Q8RX71|BAG4_ARATH	****	BAG family molecular chaperone regulator 4	IPR003103 (BAG domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf01999g05004.1	sp|Q5BL63|REEP4_XENTR	*-*-	Receptor expression-enhancing protein 4	IPR003604 (Zinc finger, U1-type), IPR004345 (TB2/DP1/HVA22-related protein), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf01116g01003.1			Unknown protein		
Niben101Scf12526g00013.1	sp|P95780|RMLB_STRMU	--*-	dTDP-glucose 4,6-dehydratase		
Niben101Scf08112g01021.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR011759 (Cytochrome C oxidase subunit II, transmembrane domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016021 (integral component of membrane), GO:0022900 (electron transport chain)
Niben101Scf09192g03004.1	AT3G24020.1	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=243	IPR004265 (Plant disease resistance response protein)	
Niben101Scf03114g00005.1	sp|P19172|CHIA_ARATH	***-	Acidic endochitinase	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07586g00013.1	AT3G54200.1	*-*-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=235	IPR004864 (Late embryogenesis abundant protein, LEA-14), IPR013783 (Immunoglobulin-like fold)	
Niben101Scf02219g02002.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10336g03012.1			Unknown protein		
Niben101Scf05955g02022.1	gb|AES61538.2|	***-	metal ion-binding protein [Medicago truncatula]	IPR029021 (Protein-tyrosine phosphatase-like)	
Niben101Scf06413g02015.1	AT1G29500.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00963g03006.1	ref|WP_030609003.1|	*-*-	phosphoglycerate mutase [Streptomyces achromogenes]	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf05245g01007.1	sp|Q9SHF3|AGO2_ARATH	***-	Protein argonaute 2	IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf11124g01027.1	AT3G25160.1	****	ER lumen protein retaining receptor family protein LENGTH=272	IPR000133 (ER lumen protein retaining receptor)	GO:0006621 (protein retention in ER lumen), GO:0016021 (integral component of membrane), GO:0046923 (ER retention sequence binding)
Niben101Scf05439g02056.1	emb|CDY45486.1|	--*-	BnaCnng12450D [Brassica napus]		
Niben101Scf01115g00003.1	ref|WP_015171905.1|	****	deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Geitlerinema sp. PCC 7407] ref|YP_007109391.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Geitlerinema sp. PCC 7407] gb|AFY66339.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Geitlerinema sp. PCC 7407]	IPR005101 (DNA photolyase, FAD-binding/Cryptochrome, C-terminal), IPR006050 (DNA photolyase, N-terminal)	GO:0003913 (DNA photolyase activity), GO:0006281 (DNA repair)
Niben101Scf06344g00004.1	ref|XP_003588295.1|	***-	Ribosomal protein S1 [Medicago truncatula]		
Niben101Scf01837g01003.1	AT1G18440.1	****	Peptidyl-tRNA hydrolase family protein LENGTH=288	IPR001328 (Peptidyl-tRNA hydrolase)	GO:0004045 (aminoacyl-tRNA hydrolase activity)
Niben101Scf00343g00001.1	gb|KEH20640.1|	--*-	transcription termination factor family protein [Medicago truncatula]		
Niben101Scf01634g00007.1	sp|P46903|NATA_BACSU	*-**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR026082 (ABC transporter A, ABCA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005215 (transporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity)
Niben101Scf02155g00001.1	sp|Q0WLC7|Y5053_ARATH	***-	CBS domain-containing protein CBSCBSPB4	IPR000270 (Phox/Bem1p), IPR000644 (CBS domain)	GO:0005515 (protein binding)
Niben101Scf00821g15009.1	ref|NP_001254442.1|	--*-	Protein UNC-52, isoform i [Caenorhabditis elegans] emb|CCG28431.1| Protein UNC-52, isoform i [Caenorhabditis elegans]	IPR006629 (LPS-induced tumour necrosis factor alpha factor)	
Niben101Scf01455g01022.1	sp|Q9ZTW3|VA721_ARATH	****	Vesicle-associated membrane protein 721	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf04436g15044.1	sp|Q9SI78|PPR93_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07668g00030.1	sp|Q8BXQ2|PIGT_MOUSE	****	GPI transamidase component PIG-T	IPR007245 (GPI transamidase component PIG-T)	GO:0016255 (attachment of GPI anchor to protein), GO:0042765 (GPI-anchor transamidase complex)
Niben101Ctg13673g00002.1	sp|Q69TG5|MAD55_ORYSJ	*-*-	MADS-box transcription factor 55	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01518g01001.1	emb|CDY44898.1|	***-	BnaA02g13840D [Brassica napus]		
Niben101Scf02107g01005.1	gb|AES94704.2|	***-	arginine/serine-rich splicing factor [Medicago truncatula]	IPR019147 (Suppressor of white apricot N-terminal domain)	
Niben101Scf00560g09010.1	sp|O49561|G2OX8_ARATH	***-	Gibberellin 2-beta-dioxygenase 8	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01922g01010.1	emb|CDY45919.1|	***-	BnaAnng08000D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf03209g00014.1	emb|CDY21026.1|	*-*-	BnaA08g24990D [Brassica napus]		
Niben101Scf04103g07018.1	AT1G04870.2	****	protein arginine methyltransferase 10 LENGTH=383	IPR010456 (Ribosomal L11 methyltransferase, PrmA), IPR025799 (Protein arginine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005737 (cytoplasm), GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity), GO:0008276 (protein methyltransferase activity)
Niben101Scf15579g00005.1	sp|P42638|TPM2_SCHMA	--*-	Tropomyosin-2		
Niben101Scf11689g01031.1	sp|P27695|APEX1_HUMAN	*-**	DNA-(apurinic or apyrimidinic site) lyase	IPR004808 (AP endonuclease 1), IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0004518 (nuclease activity), GO:0006281 (DNA repair)
Niben101Scf00028g04012.1	sp|Q5PXE3|SGMR1_MUSER	--*-	Sigma non-opioid intracellular receptor 1	IPR006716 (ERG2/sigma1 receptor-like)	GO:0006869 (lipid transport)
Niben101Scf01685g04006.1	emb|CBM56257.1|	*-**	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08465g00003.1	AT1G66330.1	***-	senescence-associated family protein LENGTH=417	IPR011989 (Armadillo-like helical)	
Niben101Scf01232g04007.1	sp|Q76CU2|PDR1_TOBAC	--*-	Pleiotropic drug resistance protein 1		
Niben101Scf09696g01115.1	sp|Q10ZE2|RS14_TRIEI	--*-	30S ribosomal protein S14	IPR001209 (Ribosomal protein S14), IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04495g00030.1	sp|Q8L6J2|RPO2A_TOBAC	****	DNA-directed RNA polymerase 2A	IPR002092 (DNA-directed RNA polymerase, phage-type), IPR024075 (DNA-directed RNA polymerase, helix hairpin domain), IPR029262 (DNA-directed RNA polymerase N-terminal domain)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf04964g00006.1	sp|Q7XBQ9|RGA2_SOLBU	--*-	Disease resistance protein RGA2		
Niben101Scf08586g02006.1	emb|CCG48004.1|	***-	conserved hypothetical protein, expressed [Triticum aestivum]		
Niben101Scf00592g03011.1	gb|ABA54793.1|	***-	late embryogenesis abundant protein [Picea glauca]		
Niben101Scf03438g06002.1	sp|Q84K00|NAC78_ARATH	*-*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg14707g00002.1	sp|P59259|H4_ARATH	***-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly), GO:0046982 (protein heterodimerization activity)
Niben101Scf10595g00008.1	AT1G63000.1	***-	nucleotide-rhamnose synthase/epimerase-reductase LENGTH=301	IPR016040 (NAD(P)-binding domain), IPR029903 (RmlD-like substrate binding domain)	
Niben101Scf18039g00002.1	sp|Q9LSQ6|PBP1_ARATH	*-**	Calcium-binding protein PBP1	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf15418g00005.1	AT1G71850.1	*-*-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=470	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf05582g02003.1	AT5G54160.1	****	O-methyltransferase 1 LENGTH=363	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf04895g00008.1	sp|Q566S6|DRS7B_DANRE	****	Dehydrogenase/reductase SDR family member 7B	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01526g01001.1	sp|O49686|PYR1_ARATH	***-	Abscisic acid receptor PYR1	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf24149g00005.1	sp|Q39265|ZFP6_ARATH	***-	Zinc finger protein 6	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf06004g00030.1			Unknown protein		
Niben101Scf21897g00005.1	AT5G01550.1	****	lectin receptor kinase a4.1 LENGTH=688	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf05123g02013.1	ref|XP_007024745.1|	***-	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao] gb|EOY27367.1| Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf06323g01002.1	sp|P93047|HMGB3_ARATH	*-*-	High mobility group B protein 3	IPR009071 (High mobility group box domain)	
Niben101Scf02105g01013.1	AT4G31390.1	****	Protein kinase superfamily protein LENGTH=682	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00279g02001.1	ref|WP_026456059.1|	--*-	glycerophosphodiester phosphodiesterase [Aeromonas enteropelogenes]		
Niben101Scf10126g00016.1	gb|KEH23106.1|	*-*-	DUF674 family protein [Medicago truncatula]	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf03978g09014.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain), IPR008906 (HAT dimerisation domain, C-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf00711g00002.1			Unknown protein	IPR029071 (Ubiquitin-related domain)	
Niben101Scf00894g03002.1	sp|B9DRZ6|MURB_STRU0	*-**	UDP-N-acetylenolpyruvoylglucosamine reductase	IPR003170 (UDP-N-acetylenolpyruvoylglucosamine reductase), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg14644g00001.1	gb|KEH27279.1|	*-*-	adenine nucleotide alpha hydrolase-like domain kinase [Medicago truncatula]		
Niben101Scf04567g03029.1	AT5G23110.1	*-**	Zinc finger, C3HC4 type (RING finger) family protein LENGTH=4706	IPR005135 (Endonuclease/exonuclease/phosphatase), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02195g05001.1	AT3G50440.1	***-	methyl esterase 10 LENGTH=288	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01399g00013.1	sp|O23614|CTPA2_ARATH	*-**	Carboxyl-terminal-processing peptidase 2, chloroplastic	IPR029045 (ClpP/crotonase-like domain)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf10161g00013.1	sp|O00267|SPT5H_HUMAN	--*-	Transcription elongation factor SPT5		
Niben101Scf02597g06015.1	sp|Q2HJC9|PQBP1_BOVIN	****	Polyglutamine-binding protein 1	IPR001202 (WW domain)	GO:0005515 (protein binding)
Niben101Scf03038g13022.1	AT1G46264.1	****	heat shock transcription factor B4 LENGTH=348	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR014751 (DNA repair protein XRCC4, C-terminal), IPR027725 (Heat shock transcription factor family)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006302 (double-strand break repair), GO:0006310 (DNA recombination), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02237g07015.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf00802g00008.1	ref|XP_002514181.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF48135.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09929g02002.1	sp|Q9SDZ9|PPAF2_IPOBA	****	Purple acid phosphatase 2	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf03911g05013.1	AT1G27320.1	****	histidine kinase 3 LENGTH=1036	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR006189 (CHASE), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01222g01011.1	AT1G70940.1	***-	Auxin efflux carrier family protein LENGTH=640	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf17290g01005.1	sp|P82787|DEF19_ARATH	***-	Defensin-like protein 19	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf03634g07008.1	sp|Q38806|HSP22_ARATH	--*-	22.0 kDa heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf02407g13012.1	sp|B1Y7P3|SYGA_LEPCP	*-**	Glycine--tRNA ligase alpha subunit	IPR006194 (Glycine-tRNA synthetase, heterodimeric)	GO:0000166 (nucleotide binding), GO:0004820 (glycine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006426 (glycyl-tRNA aminoacylation)
Niben101Scf00090g05004.1	sp|Q6PBN4|CQ10X_DANRE	***-	Coenzyme Q-binding protein COQ10 homolog, mitochondrial	IPR005031 (Streptomyces cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf14325g00003.1	AT4G23060.1	*-*-	IQ-domain 22 LENGTH=484	IPR025064 (Domain of unknown function DUF4005)	
Niben101Scf07748g00010.1	AT3G54660.1	****	glutathione reductase LENGTH=565	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR016156 (FAD/NAD-linked reductase, dimerisation domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0016668 (oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03284g00018.1	sp|Q0WQM8|FB58_ARATH	*-*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf01787g00069.1	gb|ADQ28399.1|	*-*-	transport membrane protein, partial (mitochondrion) [Butomus umbellatus]		
Niben101Scf09191g00005.1	sp|Q9LW49|ERF4_NICSY	****	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02936g04021.1	gb|EWG40727.1|	--**	cellular nucleic acid-binding protein [Fusarium verticillioides 7600] gb|EWG40728.1| cellular nucleic acid-binding protein [Fusarium verticillioides 7600]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02531g02006.1	AT5G46330.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1173	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf14937g00007.1			Unknown protein		
Niben101Scf00220g02002.1	sp|Q8S3D1|BH068_ARATH	*-*-	Transcription factor bHLH68	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02738g07005.1	sp|Q32LS6|ABHDD_DANRE	*-*-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf06189g04006.1	AT2G38070.1	***-	Protein of unknown function (DUF740) LENGTH=619	IPR008004 (Uncharacterised protein family UPF0503)	
Niben101Scf37957g00002.1	gb|AAM52341.1|	*-*-	fertility restorer-like protein [Petunia x hybrida]		
Niben101Scf18643g00012.1	sp|Q9XFI1|TRL12_ARATH	***-	Thioredoxin-like 1-2, chloroplastic	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf11960g01001.1	sp|Q8L7A9|AP4E_ARATH	***-	AP-4 complex subunit epsilon	IPR016024 (Armadillo-type fold), IPR017109 (Adaptor protein complex AP-4, epsilon subunit)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf01393g00002.1	ref|WP_032066829.1|	--*-	spore coat protein SpoU [Acinetobacter baumannii] gb|EXS44935.1| spore Coat Protein U domain protein [Acinetobacter baumannii 88816]		
Niben101Scf26642g00001.1	sp|P48074|RBL_EUGST	*-**	Ribulose bisphosphate carboxylase large chain	IPR017443 (Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf03141g07005.1	emb|CDY33632.1|	***-	BnaC08g19320D [Brassica napus]	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf00317g00012.1	AT5G47435.2	*-**	formyltetrahydrofolate deformylase, putative LENGTH=323	IPR004810 (Formyltetrahydrofolate deformylase)	GO:0006189 ('de novo' IMP biosynthetic process), GO:0008864 (formyltetrahydrofolate deformylase activity), GO:0009058 (biosynthetic process), GO:0016742 (hydroxymethyl-, formyl- and related transferase activity)
Niben101Scf02929g05011.1	sp|P20946|VSWA_TRYBR	--*-	Variant surface glycoprotein WRATAT A		
Niben101Scf04383g01024.1	sp|Q6FRZ9|ATM_CANGA	*-*-	Serine/threonine-protein kinase TEL1	IPR011009 (Protein kinase-like domain), IPR014009 (PIK-related kinase), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf02387g03004.1	sp|Q9SLG2|GGPP4_ARATH	--*-	Geranylgeranyl pyrophosphate synthase 4	IPR008949 (Isoprenoid synthase domain)	
Niben101Scf10200g00003.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]		
Niben101Scf03070g07009.1	sp|Q8LEQ0|RLA13_ARATH	*-*-	60S acidic ribosomal protein P1-3	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf01553g02002.1	ref|NP_001046162.1|	--*-	product [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf02853g05014.1	sp|Q9FXM3|RFC2_ORYSJ	*-**	Replication factor C subunit 2	IPR012763 (DNA polymerase III, subunit gamma/ tau), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0005524 (ATP binding), GO:0006260 (DNA replication), GO:0009360 (DNA polymerase III complex)
Niben101Scf04040g08015.1	sp|O82013|HSP21_SOLPE	***-	17.3 kDa class II heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf00618g01009.1	sp|Q9ZQA8|PABP7_ARATH	*-**	Polyadenylate-binding protein 7	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07080g02002.1	gb|AES92089.2|	***-	DNA-binding protein [Medicago truncatula]		
Niben101Scf00975g01001.1	sp|Q5E9J7|ADAT2_BOVIN	***-	tRNA-specific adenosine deaminase 2	IPR016193 (Cytidine deaminase-like)	GO:0003824 (catalytic activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity)
Niben101Scf00637g01001.1	AT5G06839.3	****	bZIP transcription factor family protein LENGTH=460	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03029g00014.1	sp|Q93ZF5|PHO11_ARATH	***-	Phosphate transporter PHO1 homolog 1	IPR004331 (SPX, N-terminal), IPR004342 (EXS, C-terminal)	GO:0016021 (integral component of membrane)
Niben101Scf09014g01004.1	sp|Q61187|TS101_MOUSE	*-*-	Tumor susceptibility gene 101 protein	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR017916 (Steadiness box)	GO:0006464 (cellular protein modification process), GO:0015031 (protein transport)
Niben101Scf00415g04001.1	sp|Q9HZP6|ETFB_PSEAE	****	Electron transfer flavoprotein subunit beta	IPR012255 (Electron transfer flavoprotein, beta subunit)	GO:0009055 (electron carrier activity)
Niben101Scf06404g01003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06674g01001.1	sp|A1URA3|FTSH_BARBK	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR011546 (Peptidase M41, FtsH extracellular), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding), GO:0016021 (integral component of membrane)
Niben101Scf03494g11004.1	sp|O48529|STR9_ARATH	***-	Rhodanese-like domain-containing protein 9, chloroplastic	IPR001763 (Rhodanese-like domain)	
Niben101Scf02638g00005.1			Unknown protein		
Niben101Scf01154g00007.1			Unknown protein		
Niben101Scf03873g01014.1	sp|Q5PAF6|RS2_ANAMM	*-*-	30S ribosomal protein S2	IPR001865 (Ribosomal protein S2), IPR002618 (UTP--glucose-1-phosphate uridylyltransferase family), IPR023591 (Ribosomal protein S2, flavodoxin-like domain), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0003735 (structural constituent of ribosome), GO:0003983 (UTP:glucose-1-phosphate uridylyltransferase activity), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006011 (UDP-glucose metabolic process), GO:0006412 (translation), GO:0008152 (metabolic process), GO:0070569 (uridylyltransferase activity)
Niben101Scf03634g01017.1	AT5G17790.1	*-**	zinc finger (Ran-binding) family protein LENGTH=758	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf04019g05011.1	sp|Q84W91|C3H32_ARATH	***-	Zinc finger CCCH domain-containing protein 32	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf00063g05004.1	gb|ERE90042.1|	*-**	LON peptidase domain and RING finger protein 1 [Cricetulus griseus]	IPR003111 (Peptidase S16, lon N-terminal), IPR011990 (Tetratricopeptide-like helical domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015947 (PUA-like domain)	GO:0004176 (ATP-dependent peptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding)
Niben101Ctg03354g00001.1	sp|Q39247|2ABB_ARATH	*-**	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	IPR000009 (Protein phosphatase 2A, regulatory subunit PR55), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0000159 (protein phosphatase type 2A complex), GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf05749g02026.1	AT2G14880.1	***-	SWIB/MDM2 domain superfamily protein LENGTH=141	IPR003121 (SWIB/MDM2 domain)	GO:0005515 (protein binding)
Niben101Scf09878g03001.1	sp|O24160|TGA21_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02957g00003.1	sp|Q9XIL5|PP154_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03239g05022.1	sp|Q07E15|CTTB2_MUSPF	--*-	Cortactin-binding protein 2		
Niben101Scf14606g01009.1	sp|Q6NMR8|FAF3_ARATH	*-*-	Protein FANTASTIC FOUR 3	IPR021410 (The fantastic four family)	
Niben101Scf05709g01017.1	sp|Q9SZL5|PP356_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Ctg12016g00004.1	sp|Q9ZVI9|PECT1_ARATH	*-*-	Ethanolamine-phosphate cytidylyltransferase		
Niben101Scf14958g00043.1	AT5G41040.1	*-**	HXXXD-type acyl-transferase family protein LENGTH=457	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02445g06004.1	sp|Q9C626|FB37_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf19612g01003.1	AT5G35790.1	****	glucose-6-phosphate dehydrogenase 1 LENGTH=576	IPR001282 (Glucose-6-phosphate dehydrogenase)	GO:0004345 (glucose-6-phosphate dehydrogenase activity), GO:0006006 (glucose metabolic process), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03062g05008.1	sp|Q6AWW5|Y5262_ARATH	*-*-	Ankyrin repeat-containing protein	IPR008962 (PapD-like), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf02156g00008.1	sp|Q9FSB8|CHS2_RUTGR	*-*-	Chalcone synthase 2	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02174g02009.1			Unknown protein		
Niben101Scf00035g04007.1	sp|P50346|RLA0_SOYBN	***-	60S acidic ribosomal protein P0		
Niben101Scf08653g02001.1	sp|Q54ER7|TCPH_DICDI	****	T-complex protein 1 subunit eta	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process)
Niben101Scf02792g00008.1	sp|Q9S7Y1|BH030_ARATH	*-*-	Transcription factor bHLH30		
Niben101Scf04400g02022.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf04748g02012.1	AT2G24650.1	****	DNA binding;DNA binding;sequence-specific DNA binding transcription factors LENGTH=1045	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf03595g01005.1	sp|Q6Z6W2|MAD57_ORYSJ	***-	MADS-box transcription factor 57	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf04524g00011.1	sp|Q8W234|SEUSS_ARATH	*-*-	Transcriptional corepressor SEUSS	IPR029005 (LIM-domain binding protein/SEUSS)	
Niben101Scf03393g00011.1	sp|P50651|RIR2A_ARATH	*-**	Ribonucleoside-diphosphate reductase small chain A	IPR000358 (Ribonucleotide reductase small subunit), IPR009078 (Ferritin-like superfamily)	GO:0009186 (deoxyribonucleoside diphosphate metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02485g01015.1	sp|Q9M8J9|BPM2_ARATH	*-*-	BTB/POZ and MATH domain-containing protein 2	IPR008974 (TRAF-like), IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf01440g02010.1	sp|P49215|RS17_SOLLC	***-	40S ribosomal protein S17	IPR001210 (Ribosomal protein S17e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04758g00002.1	sp|F4JSG3|RFA1E_ARATH	****	Replication protein A 70 kDa DNA-binding subunit E	IPR001878 (Zinc finger, CCHC-type), IPR004591 (Replication factor A protein 1)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0006310 (DNA recombination), GO:0008270 (zinc ion binding)
Niben101Scf08466g00008.1	sp|Q9M1W4|HMT2_ARATH	*-**	Homocysteine S-methyltransferase 2	IPR003726 (Homocysteine S-methyltransferase)	GO:0008898 (S-adenosylmethionine-homocysteine S-methyltransferase activity)
Niben101Scf00851g04002.1	emb|CDX88810.1|	*-*-	BnaA03g08390D [Brassica napus]	IPR021410 (The fantastic four family)	
Niben101Scf04504g02025.1	gb|AAY85179.1|	***-	fiber expressed protein [Gossypium hirsutum]	IPR008480 (Protein of unknown function DUF761, plant), IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf08007g02014.1	AT3G14900.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 17135 Blast hits to 10204 proteins in 644 species: Archae - 47; Bacteria - 1684; Metazoa - 5536; Fungi - 2506; Plants - 1043; Viruses - 361; Other Eukaryotes - 5958 (source: NCBI BLink). LENGTH=611		
Niben101Scf10881g00030.1	emb|CDY45481.1|	*-*-	BnaCnng12400D [Brassica napus]		
Niben101Scf01463g08009.1	AT5G62570.2	***-	Calmodulin binding protein-like LENGTH=494	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf09123g01014.1	sp|O49421|FB238_ARATH	--*-	F-box protein		
Niben101Scf10688g04007.1	sp|Q10FZ7|YAB2_ORYSJ	***-	Protein YABBY 2	IPR006780 (YABBY protein)	
Niben101Scf01681g03007.1	sp|P0C8Z7|GDL91_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf05634g00010.1			Unknown protein		
Niben101Scf05664g04023.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf16888g00010.1	AT4G34860.1	***-	Plant neutral invertase family protein LENGTH=571	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf05671g01001.1	sp|P52434|RPAB3_HUMAN	****	DNA-directed RNA polymerases I, II, and III subunit RPABC3	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24), IPR005570 (RNA polymerase, Rpb8)	GO:0006351 (transcription, DNA-templated)
Niben101Scf02475g10014.1	sp|Q8ISQ3|RL24_BRABE	--*-	60S ribosomal protein L24	IPR000988 (Ribosomal protein L24e-related), IPR023441 (Ribosomal protein L24e domain), IPR023442 (Ribosomal protein L24e, conserved site)	GO:0042254 (ribosome biogenesis)
Niben101Scf00574g05001.1			Unknown protein		
Niben101Scf35301g00001.1	sp|Q2TA24|VATO_BOVIN	*-**	V-type proton ATPase 21 kDa proteolipid subunit	IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain)
Niben101Scf03819g02009.1	AT3G01015.1	***-	TPX2 (targeting protein for Xklp2) protein family LENGTH=488	IPR009675 (TPX2), IPR027329 (TPX2, C-terminal domain)	GO:0005819 (spindle), GO:0005874 (microtubule), GO:0007067 (mitotic nuclear division)
Niben101Scf00504g07003.1	ref|XP_002517961.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF44479.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01847g02012.1	AT2G21170.1	****	triosephosphate isomerase LENGTH=315	IPR000652 (Triosephosphate isomerase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004807 (triose-phosphate isomerase activity), GO:0006096 (glycolytic process), GO:0008152 (metabolic process)
Niben101Scf02155g03023.1	sp|Q93ZR1|ELP3_ARATH	*-*-	Elongator complex protein 3		
Niben101Scf00904g03003.1	AT2G22720.2	*-*-	SPT2 chromatin protein LENGTH=672	IPR013256 (Chromatin SPT2)	
Niben101Scf05824g13010.1	AT1G80560.1	****	isopropylmalate dehydrogenase 2 LENGTH=405	IPR001804 (Isocitrate and isopropylmalate dehydrogenases family), IPR024084 (Isopropylmalate dehydrogenase-like domain)	GO:0000287 (magnesium ion binding), GO:0003862 (3-isopropylmalate dehydrogenase activity), GO:0005737 (cytoplasm), GO:0009098 (leucine biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03080g00002.1	ref|XP_002521845.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF40481.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02847g00044.1	sp|Q6G398|NUOK_BARHE	*-**	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf06387g02014.1	ref|XP_002535064.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF27325.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03335g01010.1	sp|Q9BPX3|CND3_HUMAN	*-**	Condensin complex subunit 3	IPR016024 (Armadillo-type fold), IPR018247 (EF-Hand 1, calcium-binding site), IPR025977 (Nuclear condensin complex subunit 3, C-terminal domain), IPR027165 (Condensin complex subunit 3)	GO:0000796 (condensin complex), GO:0005488 (binding), GO:0007076 (mitotic chromosome condensation)
Niben101Scf00160g09017.1	sp|Q9ZV89|TBL42_ARATH	***-	Protein trichome birefringence-like 42	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf08590g01002.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf09225g04001.1	sp|Q940V3|U91A1_ARATH	*-*-	UDP-glycosyltransferase 91A1		
Niben101Scf01768g04002.1	sp|A4IF94|HIAL1_BOVIN	--*-	Hippocampus abundant transcript-like protein 1	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf02459g09001.1	emb|CDX88574.1|	***-	BnaA03g10750D [Brassica napus]		
Niben101Scf10015g02008.1	AT3G55410.1	****	2-oxoglutarate dehydrogenase, E1 component LENGTH=1017	IPR011603 (2-oxoglutarate dehydrogenase E1 component), IPR029061 (Thiamin diphosphate-binding fold)	GO:0004591 (oxoglutarate dehydrogenase (succinyl-transferring) activity), GO:0006099 (tricarboxylic acid cycle), GO:0008152 (metabolic process), GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor), GO:0030976 (thiamine pyrophosphate binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03062g02002.1	AT3G56130.1	*-*-	biotin/lipoyl attachment domain-containing protein LENGTH=281		
Niben101Scf00043g03003.1	gb|KEH24534.1|	***-	stress regulated protein [Medicago truncatula]		
Niben101Scf32918g00001.1	sp|Q67ZM4|ADF7_ARATH	****	Actin-depolymerizing factor 7	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf00089g00001.1	sp|Q9M1E7|TET3_ARATH	***-	Tetraspanin-3	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf03046g07003.1	sp|P08451|FER2_SYNP6	*-*-	Ferredoxin-2	IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf03254g02014.1	sp|Q12ZU1|RL14_METBU	***-	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09778g00003.1	sp|Q9XJ60|MAD50_ORYSJ	*-*-	MADS-box transcription factor 50	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf02778g00003.1	ref|NP_001190703.1|	*-*-	YTH family protein [Arabidopsis thaliana] gb|AEE83078.1| YTH family protein [Arabidopsis thaliana]		
Niben101Scf05078g08027.1	sp|Q17QU7|DHR13_BOVIN	*-**	Dehydrogenase/reductase SDR family member 13	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf08078g02008.1	gb|KEH40211.1|	***-	ATRAD3-like protein [Medicago truncatula]	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf12277g02009.1	AT1G21920.1	***-	Histone H3 K4-specific methyltransferase SET7/9 family protein LENGTH=417	IPR003409 (MORN motif)	
Niben101Scf08445g02023.1			Unknown protein		
Niben101Scf06151g03007.1	ref|XP_007034677.1|	***-	OB-fold-like isoform 1 [Theobroma cacao] gb|EOY05603.1| OB-fold-like isoform 1 [Theobroma cacao]	IPR003750 (Putative RNA methyltransferase), IPR012340 (Nucleic acid-binding, OB-fold), IPR029028 (Alpha/beta knot methyltransferases)	
Niben101Scf00712g02012.1	sp|F4ID16|NU98B_ARATH	*-**	Nuclear pore complex protein NUP98B	IPR007230 (Peptidase S59, nucleoporin)	GO:0005643 (nuclear pore), GO:0006810 (transport)
Niben101Scf02319g09003.1			Unknown protein		
Niben101Ctg12842g00002.1	sp|F5HB52|US08_HCMVM	--*-	Membrane glycoprotein US8		
Niben101Scf20596g00005.1	sp|A6ZP47|DED1_YEAS7	****	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf02902g01008.1	gb|KEH24827.1|	*-*-	CDK-activating kinase assembly factor MAT1, putative [Medicago truncatula]		
Niben101Scf02325g01004.1	sp|B0U1N3|PUR7_XYLFM	*-**	Phosphoribosylaminoimidazole-succinocarboxamide synthase	IPR013816 (ATP-grasp fold, subdomain 2), IPR028923 (SAICAR synthetase/ADE2, N-terminal)	GO:0004639 (phosphoribosylaminoimidazolesuccinocarboxamide synthase activity), GO:0005524 (ATP binding), GO:0006164 (purine nucleotide biosynthetic process)
Niben101Scf00193g04002.1	gb|KEH25755.1|	*-*-	C4-dicarboxylate transporter/malic acid transporter [Medicago truncatula]		
Niben101Scf00647g01005.1	sp|P93788|REMO_SOLTU	***-	Remorin	IPR005516 (Remorin, C-terminal)	
Niben101Scf04792g01004.1	sp|Q54Q31|PHB2_DICDI	***-	Prohibitin-2	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf05776g03009.1	sp|C7G046|Y6969_DICDI	--*-	von Willebrand factor A domain-containing protein DDB_G0286969		
Niben101Scf00503g07005.1	sp|Q40477|ERF4_TOBAC	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01372g06018.1	sp|Q3TWW8|SRSF6_MOUSE	--*-	Serine/arginine-rich splicing factor 6	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf16148g01014.1	sp|Q88XP8|GATC_LACPL	***-	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	IPR003837 (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit)	GO:0006450 (regulation of translational fidelity)
Niben101Scf01257g00008.1	AT2G46040.1	****	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=562	IPR000949 (ELM2 domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf03872g01001.1	sp|Q10992|CYTA_HELAN	*-**	Cysteine proteinase inhibitor A	IPR000010 (Proteinase inhibitor I25, cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf04109g02002.1	sp|P41129|RL132_BRANA	***-	60S ribosomal protein L13-2	IPR001380 (Ribosomal protein L13e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01241g01006.1	emb|CDY09397.1|	***-	BnaA02g26130D [Brassica napus]		
Niben101Scf17787g00002.1	sp|Q9M0H6|MAN5_ARATH	***-	Mannan endo-1,4-beta-mannosidase 5	IPR017853 (Glycoside hydrolase superfamily)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf02425g01009.1	sp|Q9FNA9|PDAT1_ARATH	****	Phospholipid:diacylglycerol acyltransferase 1	IPR003386 (Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0008374 (O-acyltransferase activity)
Niben101Scf08804g01015.1			Unknown protein		
Niben101Scf00037g01005.1	sp|O48529|STR9_ARATH	***-	Rhodanese-like domain-containing protein 9, chloroplastic	IPR001763 (Rhodanese-like domain)	
Niben101Scf02541g10005.1	tpg|DAA40887.1|	***-	TPA: hypothetical protein ZEAMMB73_782543 [Zea mays]		
Niben101Scf09123g01002.1	AT4G14600.1	***-	Target SNARE coiled-coil domain protein LENGTH=137	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf03766g11002.1	AT5G19130.1	****	GPI transamidase component family protein / Gaa1-like family protein LENGTH=699	IPR007246 (Gaa1-like, GPI transamidase component)	GO:0016021 (integral component of membrane), GO:0042765 (GPI-anchor transamidase complex)
Niben101Scf06435g02006.1			Unknown protein		
Niben101Scf08597g01031.1	gb|AES99834.2|	***-	E3 ubiquitin-protein ligase COP1 [Medicago truncatula]	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06779g03008.1	sp|Q9QXN3|TRIP4_MOUSE	*-*-	Activating signal cointegrator 1	IPR015947 (PUA-like domain)	
Niben101Scf01818g04009.1	sp|B5YJW3|NPD_THEYD	*-**	NAD-dependent protein deacetylase	IPR003000 (Sirtuin family), IPR029035 (DHS-like NAD/FAD-binding domain)	GO:0070403 (NAD+ binding)
Niben101Scf00718g00007.1	ref|NP_001174342.1|	--*-	[Oryza sativa Japonica Group] dbj|BAH93070.1| [Oryza sativa Japonica Group]		
Niben101Scf05249g09010.1	ref|XP_003589307.1|	--*-	F-box/FBD/LRR-repeat protein [Medicago truncatula]		
Niben101Scf07829g03022.1			Unknown protein		
Niben101Scf03224g06006.1	AT1G80510.1	***-	Transmembrane amino acid transporter family protein LENGTH=489	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf04918g10003.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01933g02009.1	AT2G40710.1	*-**	Haemolysin-III related integral membrane protein LENGTH=93	IPR004254 (AdipoR/Haemolysin-III-related)	GO:0016021 (integral component of membrane)
Niben101Scf03853g02008.1	emb|CDX99259.1|	***-	BnaC05g33740D [Brassica napus]		
Niben101Scf18450g00002.1	sp|Q7XLD4|ZIP3_ORYSJ	****	Zinc transporter 3	IPR003689 (Zinc/iron permease)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01119g05015.1	ref|XP_007021564.1|	***-	30S rib S20 isoform 2 [Theobroma cacao]		
Niben101Scf00571g10001.1	ref|WP_016821513.1|	***-	hydrolase [Paenibacillus polymyxa]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf08675g00025.1	sp|Q66HG4|GALM_RAT	***-	Aldose 1-epimerase	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0019318 (hexose metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf01172g11016.1	ref|XP_007047229.1|	***-	AP2/B3-like transcriptional factor family protein isoform 3 [Theobroma cacao] gb|EOX91386.1| AP2/B3-like transcriptional factor family protein isoform 3 [Theobroma cacao]		
Niben101Scf04403g02005.1			Unknown protein		
Niben101Scf00752g03013.1	sp|Q9HBF4|ZFYV1_HUMAN	*-*-	Zinc finger FYVE domain-containing protein 1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0046872 (metal ion binding)
Niben101Scf03412g05009.1	sp|P81898|PNAA_PRUDU	***-	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A	IPR021102 (Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A)	
Niben101Scf00527g06005.1	sp|Q9SHD1|EXPB4_ARATH	***-	Expansin-B4	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0019953 (sexual reproduction)
Niben101Scf00536g15020.1	sp|P22928|CHSJ_PETHY	*-*-	Chalcone synthase J	IPR016039 (Thiolase-like)	
Niben101Scf03953g03003.1	sp|Q7WTR3|MDTK_ERWAM	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00765g01003.1			Unknown protein		
Niben101Scf05617g01021.1	sp|Q9LM76|PUB44_ARATH	***-	U-box domain-containing protein 44	IPR008808 (Powdery mildew resistance protein, RPW8 domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Ctg08959g00003.1	AT4G37130.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=513		
Niben101Scf06245g01014.1	sp|Q84K00|NAC78_ARATH	*-*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07402g00013.1	AT1G62400.1	****	Protein kinase superfamily protein LENGTH=345	IPR011009 (Protein kinase-like domain), IPR015783 (Serine/threonine-protein kinase HT1, plant)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg08138g00001.1	sp|Q70Z17|NAP1C_TOBAC	--*-	Nucleosome assembly protein 1;3		
Niben101Scf06245g01015.1	sp|Q84K00|NAC78_ARATH	***-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02459g10012.1	ref|XP_002529573.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF32807.1| conserved hypothetical protein [Ricinus communis]	IPR000637 (HMG-I/HMG-Y, DNA-binding, conserved site)	GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf39545g00005.1	sp|O80443|GDL46_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf03365g00014.1	sp|Q8H038|KATAM_ORYSJ	***-	Xyloglucan galactosyltransferase KATAMARI1 homolog	IPR004263 (Exostosin-like)	
Niben101Scf05732g03007.1	ref|WP_020435558.1|	*-*-	rhomboid family protein [Cl [Clostridium sp. CAG:1000]	IPR002610 (Peptidase S54, rhomboid)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf04554g03002.1	AT5G10720.1	****	histidine kinase 5 LENGTH=922	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09774g00001.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07176g00005.1	AT1G61800.1	***-	glucose-6-phosphate/phosphate translocator 2 LENGTH=388	IPR004696 (Triose phosphate/phosphoenolpyruvate translocator), IPR004853 (Triose-phosphate transporter domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf06848g02003.1			Unknown protein		
Niben101Scf01002g06004.1	emb|CDY10775.1|	*-*-	BnaA05g11610D [Brassica napus]		
Niben101Scf01956g12006.1	AT2G32830.1	*-**	phosphate transporter 1;5 LENGTH=542	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03714g05010.1	sp|Q8H0W2|HDA9_ARATH	****	Histone deacetylase 9	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	GO:0004407 (histone deacetylase activity), GO:0016575 (histone deacetylation)
Niben101Scf00650g02003.1	sp|Q9M5L0|RL35_EUPES	***-	60S ribosomal protein L35	IPR001854 (Ribosomal protein L29)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf30418g00018.1	gb|ABF95368.1|	*-*-	expressed protein [Oryza sativa Japonica Group]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf01145g03023.1	sp|Q9AXT8|CMT1_MAIZE	****	DNA (cytosine-5)-methyltransferase 1	IPR001525 (C-5 cytosine methyltransferase), IPR016197 (Chromo domain-like), IPR023779 (Chromo domain, conserved site), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003677 (DNA binding), GO:0006306 (DNA methylation), GO:0008168 (methyltransferase activity)
Niben101Scf02860g01015.1	gb|ABD93472.2|	*-*-	[Solanum melongena]		
Niben101Scf01266g01010.1	sp|Q55750|MFD_SYNY3	--**	Transcription-repair-coupling factor	IPR005118 (Transcription-repair-coupling factor, C-terminal domain)	GO:0006281 (DNA repair)
Niben101Scf00887g00009.1	AT5G22110.1	*-**	DNA polymerase epsilon subunit B2 LENGTH=526	IPR007185 (DNA polymerase alpha/epsilon, subunit B)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication)
Niben101Scf02515g00013.1			Unknown protein		
Niben101Scf05118g00005.1	ref|NP_191672.1|	****	alpha-1,4-galacturon [Arabidopsis thaliana] emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gb|AHL38722.1| glycosyltransferase, partial [Arabidopsis thaliana]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf02771g01001.1	gb|ACG43350.1|	***-	SLT1 protein [Zea mays]		
Niben101Scf04433g01010.1	sp|Q4VYC8|NSP1_MEDTR	*-*-	Nodulation-signaling pathway 1 protein	IPR005202 (Transcription factor GRAS), IPR030015 (Scarecrow-like protein 29/nodulation signalling pathway 1)	
Niben101Scf00687g06006.1	sp|Q8GYP6|PPR49_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002625 (Smr protein/MutS2 C-terminal), IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04020g02004.1	sp|Q65FT5|MENE_BACLD	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01683g17014.1	gb|KFU96985.1|	--*-	WD repeat-containing protein 96, partial [Pterocles gutturalis]		
Niben101Scf05385g01015.1	sp|Q93ZY2|ROGF1_ARATH	****	Rop guanine nucleotide exchange factor 1	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf06435g02007.1			Unknown protein		
Niben101Scf02172g06012.1	gb|KEH31964.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf11802g02002.1	gb|AAV38418.1|	*-**	zinc finger protein 9 (a cellular retroviral nucleic acid binding protein) [synthetic construct] gb|AAX43243.1| zinc finger protein 9 [synthetic construct]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf07311g01012.1	AT5G01100.1	*-*-	O-fucosyltransferase family protein LENGTH=631		
Niben101Scf03309g08032.1	sp|Q5QNA6|SCRL2_ORYSJ	*-*-	SCAR-like protein 2	IPR028288 (SCAR/WAVE family)	GO:0005856 (cytoskeleton), GO:0030036 (actin cytoskeleton organization)
Niben101Scf07584g01002.1	gb|ACG45903.1|	-**-	deleted in split hand/splt foot protein 1 [Zea mays]	IPR007834 (DSS1/SEM1)	
Niben101Scf06525g00011.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf12410g00018.1	sp|Q9ZP54|PARP1_ARATH	***-	Poly [ADP-ribose] polymerase 1	IPR001357 (BRCT domain), IPR004102 (Poly(ADP-ribose) polymerase, regulatory domain), IPR008893 (WGR domain), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR012982 (PADR1)	GO:0003950 (NAD+ ADP-ribosyltransferase activity), GO:0005634 (nucleus), GO:0006471 (protein ADP-ribosylation)
Niben101Scf04316g00012.1	sp|Q19980|GCH1_CAEEL	--*-	GTP cyclohydrolase 1		
Niben101Scf02240g06020.1	sp|Q5ZJF4|PRDX6_CHICK	***-	Peroxiredoxin-6	IPR012336 (Thioredoxin-like fold)	GO:0016209 (antioxidant activity), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00253g01014.1	sp|P28025|KI11B_XENLA	--*-	Kinesin-like protein KIF11-B		
Niben101Scf00647g01006.1	sp|F4I214|TET10_ARATH	***-	Tetraspanin-10	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf07585g00007.1	AT1G22400.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf15777g00001.1	gb|ADV29725.1|	***-	receptor-like protein kinase 2.33 [Solanum arcanum]	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf03110g05010.1	sp|P05100|3MG1_ECOLI	****	DNA-3-methyladenine glycosylase 1	IPR005019 (Methyladenine glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0008725 (DNA-3-methyladenine glycosylase activity)
Niben101Scf07823g00021.1	gb|AIK66472.1|	*-*-	S3-locus F-box type-15 protein [Petunia integrifolia subsp. inflata]		
Niben101Scf01319g04018.1	ref|XP_002510539.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52726.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01869g00012.1	sp|Q6Z2W3|ARFE_ORYSJ	*-*-	Auxin response factor 5	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf02778g00002.1	sp|Q9FHP3|FB300_ARATH	--*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf01124g02003.1	sp|F4ISY0|Y2837_ARATH	***-	WEB family protein	IPR008545 (WEB family)	
Niben101Scf20101g00009.1	AT3G14270.1	*-**	phosphatidylinositol-4-phosphate 5-kinase family protein LENGTH=1791	IPR002423 (Chaperonin Cpn60/TCP-1), IPR002498 (Phosphatidylinositol-4-phosphate 5-kinase, core), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027409 (GroEL-like apical domain), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0044267 (cellular protein metabolic process), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf08702g02005.1	sp|Q9SXZ2|FT_ARATH	***-	Protein FLOWERING LOCUS T	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf03009g00014.1	sp|P16924|P4HA1_CHICK	*-*-	Prolyl 4-hydroxylase subunit alpha-1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03960g00001.1	AT1G09890.1	*-*-	Rhamnogalacturonate lyase family protein LENGTH=617	IPR010325 (Rhamnogalacturonate lyase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf00630g02003.1	sp|C1KXG0|GPMA_LISMC	****	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0004619 (phosphoglycerate mutase activity), GO:0006096 (glycolytic process), GO:0008152 (metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf08275g00004.1	sp|Q6AU07|DBR1_ORYSJ	*-*-	Lariat debranching enzyme	IPR007708 (Lariat debranching enzyme, C-terminal)	GO:0006397 (mRNA processing), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02015g07019.1	AT1G54385.1	***-	ARM repeat superfamily protein LENGTH=560	IPR007022 (Gem-associated protein 2), IPR016024 (Armadillo-type fold)	GO:0000387 (spliceosomal snRNP assembly), GO:0000398 (mRNA splicing, via spliceosome), GO:0005488 (binding), GO:0005681 (spliceosomal complex)
Niben101Scf00527g04006.1	AT4G00080.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=209	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf03855g00003.1	AT5G27200.1	***-	acyl carrier protein 5 LENGTH=139	IPR003231 (Acyl carrier protein (ACP)), IPR009081 (Acyl carrier protein-like)	GO:0006633 (fatty acid biosynthetic process)
Niben101Scf09225g04002.1	AT5G65550.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=466	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf14022g00012.1	sp|Q6PD62|CTR9_HUMAN	***-	RNA polymerase-associated protein CTR9 homolog	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02268g07002.1	sp|P81395|MYB30_ANTMA	*-*-	Myb-related protein 330	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01634g06004.1	ref|XP_002533844.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF28535.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00730g01008.1	dbj|BAA96881.1|	*-*-	mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf04926g01001.1	sp|Q9FJN9|PABN2_ARATH	****	Polyadenylate-binding protein 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00504g07004.1	AT4G03415.1	***-	Protein phosphatase 2C family protein LENGTH=468	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf00496g00001.1	sp|Q7RTV5|AAED1_HUMAN	***-	Thioredoxin-like protein AAED1	IPR012336 (Thioredoxin-like fold)	
Niben101Scf01037g03001.1	AT1G05060.1	***-	unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=253		
Niben101Scf13118g00003.1	AT3G53520.4	***-	UDP-glucuronic acid decarboxylase 1 LENGTH=458	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf01308g00014.1	sp|Q8LPR5|TCP4_ARATH	*-*-	Transcription factor TCP4	IPR005333 (Transcription factor, TCP)	
Niben101Scf07616g02015.1	sp|Q2FJ31|ADH_STAA3	***-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08097g00005.1	AT1G11700.1	***-	Protein of unknown function, DUF584 LENGTH=201	IPR007608 (Senescence regulator S40)	
Niben101Ctg07850g00002.1	gb|EMT23266.1|	--*-	Eukaryotic translation initiation factor 2 subunit alpha [Aegilops tauschii]		
Niben101Scf02172g04005.1	sp|P19532|TFE3_HUMAN	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02605g05013.1	ref|XP_007021228.1|	--*-	Adenine nucleotide alpha hydrolases-like superfamily protein isoform 1 [Theobroma cacao] gb|EOY12753.1| Adenine nucleotide alpha hydrolases-like superfamily protein isoform 1 [Theobroma cacao]		
Niben101Scf00474g01002.1	gb|AAK20905.1|	***-	plastid-targeted protein 4 [Craterostigma plantagineum]		
Niben101Ctg00478g00001.1	ref|XP_007045551.1|	*-*-	S-aden , putative [Theobroma cacao]	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02077g00003.1	ref|XP_007036061.1|	***-	ARM repeat superfamily protein, putative isoform 1 [Theobroma cacao] gb|EOY20562.1| ARM repeat superfamily protein, putative isoform 1 [Theobroma cacao]	IPR011989 (Armadillo-like helical)	
Niben101Scf02145g11009.1	gb|KEH36884.1|	***-	F-box plant-like protein, putative [Medicago truncatula]	IPR027949 (Petal formation-expressed)	
Niben101Scf01958g05020.1	AT2G35585.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=156		
Niben101Scf02749g05026.1	sp|Q9SR66|DML2_ARATH	*-*-	DEMETER-like protein 2	IPR011257 (DNA glycosylase), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair)
Niben101Scf02822g01003.1			Unknown protein		
Niben101Ctg14569g00004.1	AT5G43830.1	***-	Aluminium induced protein with YGL and LRDR motifs LENGTH=251	IPR024286 (Domain of unknown function DUF3700), IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf00702g00049.1	ref|WP_013947986.1|	*-**	MULTISPECIES: heme lyase subunit CcmF [Hyphomicrobium] ref|YP_004676154.1| cytochrome c-type biogenesis heme lyase CycK [Hyphomicrobium sp. MC1] emb|CCB65586.1| cytochrome c-type biogenesis protein CycK; heme lyase [Hyphomicrobium sp. MC1]	IPR002541 (Cytochrome c assembly protein)	GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf00859g00007.1	emb|CDY19508.1|	--*-	BnaC09g13950D [Brassica napus]		
Niben101Scf04722g00006.1	AT3G51850.1	****	calcium-dependent protein kinase 13 LENGTH=528	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03238g03008.1	ref|NP_001043490.2|	--*-	[Oryza sativa Japonica Group] dbj|BAF05404.2| Os01g0600300, partial [Oryza sativa Japonica Group]		
Niben101Ctg13108g00001.1	ref|XP_007033409.1|	*-*-	Sarcolemmal membrane-associated protein, putative isoform 2 [Theobroma cacao] gb|EOY04335.1| Sarcolemmal membrane-associated protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf06738g02018.1	AT5G13710.1	*-**	sterol methyltransferase 1 LENGTH=336	IPR013705 (Sterol methyltransferase C-terminal)	GO:0006694 (steroid biosynthetic process), GO:0008168 (methyltransferase activity)
Niben101Scf00797g10001.1	ref|NP_001234828.1|	***-	extensin-like protein Ext1 precursor [Solanum lycopersicum] emb|CAD10626.1| extensin-like protein Ext1 [Solanum lycopersicum]		
Niben101Scf03923g14027.1	sp|Q5U8Z7|PPID_AMAMU	*-**	Peptidyl-prolyl cis-trans isomerase D	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf02688g02014.1	sp|Q41238|LOX16_SOLTU	***-	Linoleate 9S-lipoxygenase 6	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00219g04015.1	AT3G28740.1	***-	Cytochrome P450 superfamily protein LENGTH=509	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04134g01015.1			Unknown protein		
Niben101Scf09467g02010.1	AT4G32760.2	*-*-	ENTH/VHS/GAT family protein LENGTH=676	IPR004152 (GAT domain)	GO:0005622 (intracellular), GO:0006886 (intracellular protein transport)
Niben101Scf08447g09007.1	sp|Q9SRT0|PUB9_ARATH	***-	U-box domain-containing protein 9	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf03156g01016.1	AT2G30170.1	***-	Protein phosphatase 2C family protein LENGTH=298	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf06081g00005.1			Unknown protein		
Niben101Scf04487g06004.1			Unknown protein		
Niben101Scf02601g05001.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR003959 (ATPase, AAA-type, core), IPR008543 (Uncharacterised protein family Ycf2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf05830g01002.1	ref|NP_001048145.1|	***-	product [Oryza sativa Japonica Group]	IPR008976 (Lipase/lipooxygenase, PLAT/LH2)	
Niben101Scf05270g01002.1	sp|Q9XEA8|CYSK2_ORYSJ	****	Cysteine synthase	IPR005856 (Cysteine synthase K/M)	GO:0004124 (cysteine synthase activity), GO:0006535 (cysteine biosynthetic process from serine)
Niben101Scf03738g00008.1	emb|CDY01127.1|	*-*-	BnaA04g06920D [Brassica napus]	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Ctg09240g00002.1	sp|P42423|YXDL_BACSU	****	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf03969g06013.1	ref|XP_007035477.1|	--*-	Serine/threonine-protein kinase isoform 1 [Theobroma cacao] gb|EOY06403.1| Serine/threonine-protein kinase isoform 1 [Theobroma cacao]		
Niben101Scf04953g05009.1	sp|Q68DY9|ZN772_HUMAN	--*-	Zinc finger protein 772	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf02735g00013.1	sp|O49421|FB238_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf12835g00006.1	gb|KGR05528.1|	***-	ribosomal RNA-processing protein 12 [Candida albicans P78048]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Ctg11993g00003.1	sp|Q9C7G1|PUB45_ARATH	*-*-	U-box domain-containing protein 45	IPR003613 (U box domain)	GO:0004842 (ubiquitin-protein transferase activity), GO:0016567 (protein ubiquitination)
Niben101Scf01998g03004.1	sp|Q9XIK5|Y1045_ARATH	--*-	B3 domain-containing protein	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf03905g01008.1	sp|P29130|PHYB_TOBAC	***-	Phytochrome B	IPR001294 (Phytochrome), IPR005467 (Signal transduction histidine kinase, core), IPR029016 (GAF domain-like)	GO:0000155 (phosphorelay sensor kinase activity), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0007165 (signal transduction), GO:0009584 (detection of visible light), GO:0009585 (red, far-red light phototransduction), GO:0009881 (photoreceptor activity), GO:0016020 (membrane), GO:0017006 (protein-tetrapyrrole linkage), GO:0018298 (protein-chromophore linkage), GO:0042803 (protein homodimerization activity)
Niben101Scf09014g01003.1	sp|Q86A67|ALF_DICDI	****	Fructose-bisphosphate aldolase	IPR000741 (Fructose-bisphosphate aldolase, class-I), IPR013785 (Aldolase-type TIM barrel), IPR029768 (Fructose-bisphosphate aldolase class-I active site)	GO:0003824 (catalytic activity), GO:0004332 (fructose-bisphosphate aldolase activity), GO:0006096 (glycolytic process)
Niben101Scf00313g07006.1	sp|Q564K3|CND2_ARATH	*-**	Condensin complex subunit 2	IPR022816 (Condensin complex subunit 2/barren)	GO:0000796 (condensin complex), GO:0007076 (mitotic chromosome condensation)
Niben101Scf01005g05026.1	sp|Q54Q92|LMD2A_DICDI	***-	LMBR1 domain-containing protein 2 homolog A	IPR006876 (LMBR1-like membrane protein)	
Niben101Scf18293g00003.1	AT1G62770.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=204	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00415g04002.1			Unknown protein		
Niben101Scf02309g03014.1	sp|A0A352|PSBE_COFAR	***-	Cytochrome b559 subunit alpha	IPR006217 (Photosystem II cytochrome b559, alpha subunit)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf00458g05001.1	sp|Q9ZUN5|TET2_ARATH	***-	Tetraspanin-2	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf09610g00013.1	ref|XP_002527559.1|	*-**	cellular nucleic acid binding protein, putative [Ricinus communis] gb|EEF34811.1| cellular nucleic acid binding protein, putative [Ricinus communis]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf00088g01009.1	AT3G29130.2	***-	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown;	IPR019371 (Uncharacterised domain KxDL)	
Niben101Scf02929g01072.1	sp|Q9PER1|UVRB_XYLFA	--*-	UvrABC system protein B		
Niben101Scf01146g01002.1	AT3G24140.1	***-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=414	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02078g05017.1	ref|XP_007014955.1|	***-	Far1-related sequence 4 isoform 3 [Theobroma cacao] gb|EOY32574.1| Far1-related sequence 4 isoform 3 [Theobroma cacao]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf02357g01004.1	sp|Q40704|MADS3_ORYSJ	****	MADS-box transcription factor 3	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf00647g02011.1	sp|B4NFY1|EI3G2_DROWI	****	Eukaryotic translation initiation factor 3 subunit G-2	IPR017334 (Eukaryotic translation initiation factor 3 subunit G), IPR024675 (Eukaryotic translation initiation factor 3 subunit G, N-terminal)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf04526g00018.1	sp|P0C8K2|RPB2_ASFK5	*-**	DNA-directed RNA polymerase subunit 2	IPR007644 (RNA polymerase, beta subunit, protrusion), IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf01537g03011.1	sp|O64511|TLOV1_ARATH	***-	Protein TWIN LOV 1	IPR000014 (PAS domain), IPR000700 (PAS-associated, C-terminal)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction)
Niben101Scf07182g05011.1	sp|B9NAN0|ARGJ_POPTR	*-*-	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic	IPR024733 (Alpha-N-acetylglucosaminidase, tim-barrel domain)	
Niben101Scf11960g02003.1	sp|B5WWZ8|FAO1_LOTJA	*-*-	Long-chain-alcohol oxidase FAO1		
Niben101Scf03595g17001.1	sp|Q94BQ2|PRS8B_ARATH	*-*-	26S protease regulatory subunit 8 homolog B	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02468g08010.1	AT1G53510.1	*-**	mitogen-activated protein kinase 18 LENGTH=615	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03824g00016.1	AT5G43630.1	****	zinc knuckle (CCHC-type) family protein LENGTH=831	IPR001878 (Zinc finger, CCHC-type), IPR004343 (Plus-3)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006352 (DNA-templated transcription, initiation), GO:0008270 (zinc ion binding), GO:0016570 (histone modification)
Niben101Scf02290g07003.1	sp|O35685|NUDC_MOUSE	*-*-	Nuclear migration protein nudC	IPR008978 (HSP20-like chaperone)	
Niben101Scf01326g08009.1	sp|Q5EA79|GALM_BOVIN	***-	Aldose 1-epimerase	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf01727g00014.1			Unknown protein		
Niben101Scf11383g00020.1	sp|P21335|TADA_BACSU	*-*-	tRNA-specific adenosine deaminase	IPR016193 (Cytidine deaminase-like)	GO:0003824 (catalytic activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity)
Niben101Scf06228g00002.1	sp|Q43846|SSY3_SOLTU	--*-	Soluble starch synthase 3, chloroplastic/amyloplastic		
Niben101Scf02569g03009.1	sp|C3K1M2|HSCB_PSEFS	--*-	Co-chaperone protein HscB homolog		
Niben101Scf00156g02004.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02807g06004.1	sp|Q9SLG3|ZIP3_ARATH	****	Zinc transporter 3	IPR003689 (Zinc/iron permease)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00415g03017.1	sp|Q5P4E1|ATPE_AROAE	--*-	ATP synthase epsilon chain		
Niben101Scf03766g00014.1	sp|Q9C7F5|NTF2_ARATH	****	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2)	GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf12653g01003.1	AT5G08570.1	****	Pyruvate kinase family protein LENGTH=510	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf04703g07002.1	AT1G62770.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=204	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf17024g00002.1	AT1G02205.3	****	Fatty acid hydroxylase superfamily LENGTH=630	IPR006694 (Fatty acid hydroxylase), IPR021940 (Uncharacterised domain Wax2, C-terminal)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04040g04005.1	emb|CDX78312.1|	*-*-	BnaA03g02240D [Brassica napus]		
Niben101Scf03348g00013.1	sp|P48505|UCR11_SOLTU	***-	Ubiquinol-cytochrome c reductase complex 6.7 kDa protein		
Niben101Scf04688g01014.1	sp|Q9NYT6|ZN226_HUMAN	--*-	Zinc finger protein 226	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR029789 (Protein TRANSPARENT TESTA 1 like)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf03326g04010.1	sp|Q9S9N9|CCR1_ARATH	***-	Cinnamoyl-CoA reductase 1	IPR016040 (NAD(P)-binding domain)	
Niben101Scf04556g00004.1	AT1G05575.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=89		
Niben101Scf02853g06017.1			Unknown protein		
Niben101Scf06164g01003.1	sp|D7LBN4|CSPLH_ARALL	*-*-	CASP-like protein 4B1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf05132g02011.1	sp|O48850|VA725_ARATH	****	Vesicle-associated membrane protein 725	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf04871g23001.1	sp|Q93VI3|RL171_ARATH	****	60S ribosomal protein L17-1	IPR001063 (Ribosomal protein L22/L17)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf00622g01011.1	AT2G45550.1	*-*-	cytochrome P450, family 76, subfamily C, polypeptide 4 LENGTH=511	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02665g00008.1	sp|B0TH87|NUON_HELMI	*-*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf00996g00015.1	gb|KEH36642.1|	***-	DUF1685 family protein [Medicago truncatula]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf02068g04005.1	ref|WP_020770041.1|	***-	sodium Bile acid symporter family protein [Lept [Leptospira sp. B5-022]	IPR002657 (Bile acid:sodium symporter/arsenical resistance protein  Acr3)	GO:0016020 (membrane)
Niben101Scf13111g00006.1	sp|Q641W2|MYG1_RAT	***-	UPF0160 protein MYG1, mitochondrial	IPR003226 (Metal-dependent protein hydrolase)	
Niben101Scf00176g06012.1	AT1G61740.1	***-	Sulfite exporter TauE/SafE family protein LENGTH=458	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf25108g00001.1	sp|O49929|OEP24_PEA	***-	Outer envelope pore protein 24, chloroplastic		
Niben101Scf07018g00005.1	sp|O80877|EF4L1_ARATH	*-*-	Protein ELF4-LIKE 1	IPR009741 (Protein of unknown function DUF1313)	
Niben101Scf02606g03019.1	ref|WP_032999563.1|	*-**	HAD family hydrolase [Aggregatibacter actinomycetemcomitans]	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf03431g00008.1			Unknown protein		
Niben101Scf00453g03019.1	gb|KEH41512.1|	****	IQ calmodulin-binding motif protein, putative [Medicago truncatula]	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf01049g05011.1	sp|Q9SXA1|P4KA1_ARATH	****	Phosphatidylinositol 4-kinase alpha 1	IPR015433 (Phosphatidylinositol Kinase), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0046854 (phosphatidylinositol phosphorylation), GO:0048015 (phosphatidylinositol-mediated signaling)
Niben101Scf02426g02028.1	sp|Q8CH18|CCAR1_MOUSE	*-*-	Cell division cycle and apoptosis regulator protein 1	IPR025224 (Cell cycle and apoptosis regulator protein), IPR025954 (DBC1/CARP1 catalytically inactive NUDIX hydrolase domain)	GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01343g00019.1	sp|Q53YF3|SPC3B_ARATH	****	Signal peptidase complex subunit 3B	IPR007653 (Signal peptidase 22kDa subunit)	GO:0005787 (signal peptidase complex), GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf06382g03007.1	sp|Q9SP35|TI172_ARATH	*-**	Mitochondrial import inner membrane translocase subunit TIM17-2	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	GO:0005744 (mitochondrial inner membrane presequence translocase complex), GO:0006886 (intracellular protein transport), GO:0015450 (P-P-bond-hydrolysis-driven protein transmembrane transporter activity)
Niben101Scf13411g04012.1	sp|A5F3R4|RHLB_VIBC3	****	ATP-dependent RNA helicase RhlB	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf09489g00005.1	AT1G35490.1	***-	bZIP family transcription factor LENGTH=300		
Niben101Scf04643g02003.1			Unknown protein		
Niben101Scf03504g03001.1	gb|ADX62222.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia mexicana]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf01184g08008.1	sp|B4THI1|YQGE_SALHS	-**-	UPF0301 protein YqgE	IPR003774 (Protein of unknown function UPF0301)	
Niben101Scf32882g00003.1	sp|E2RQ15|RAB25_CANFA	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02461g04001.1	sp|O81123|ZIP1_ARATH	****	Zinc transporter 1	IPR003689 (Zinc/iron permease)	GO:0005385 (zinc ion transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport), GO:0071577 (zinc ion transmembrane transport)
Niben101Scf00662g01004.1	sp|Q56P11|RPOC2_LACSA	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf05177g02007.1	sp|Q8GDY3|ISPT_HELMO	****	Isoprenyl transferase	IPR001441 (Decaprenyl diphosphate synthase-like)	GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf07162g01030.1	sp|O04532|FH8_ARATH	*-*-	Formin-like protein 8	IPR015425 (Formin, FH2 domain)	
Niben101Scf02869g02006.1	AT4G28210.1	***-	embryo defective 1923 LENGTH=348		
Niben101Scf02223g00003.1	tpg|DAA61901.1|	--*-	TPA: hypothetical protein ZEAMMB73_985227 [Zea mays]		
Niben101Scf00051g01015.1	ref|NP_001058682.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf18218g00001.1	sp|B0CQN9|TVP23_LACBS	****	Golgi apparatus membrane protein TVP23	IPR008564 (Protein of unknown function DUF846, eukaryotic)	GO:0016021 (integral component of membrane)
Niben101Scf09151g02002.1	sp|Q6H5U3|DES1L_ORYSJ	****	Sphingolipid delta(4)-desaturase DES1-like	IPR011388 (Sphingolipid delta4-desaturase)	GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0030148 (sphingolipid biosynthetic process)
Niben101Scf08208g02017.1	AT4G20840.1	*-**	FAD-binding Berberine family protein LENGTH=539	IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10574g00003.1	AT3G09250.2	*-*-	Nuclear transport factor 2 (NTF2) family protein LENGTH=246		
Niben101Ctg11884g00002.1			Unknown protein		
Niben101Scf03718g02003.1	sp|Q9LSN7|BH147_ARATH	***-	Transcription factor bHLH147	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02006g04014.1	sp|Q8LPU5|CMT3_MAIZE	*-*-	DNA (cytosine-5)-methyltransferase 3	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01232g04006.1	sp|Q7PC82|AB42G_ARATH	*-*-	ABC transporter G family member 42	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf08334g00002.1	sp|Q9C952|CPSF3_ARATH	***-	Cleavage and polyadenylation specificity factor subunit 3-I	IPR001279 (Beta-lactamase-like), IPR011108 (RNA-metabolising metallo-beta-lactamase), IPR021718 (Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term), IPR022712 (Beta-Casp domain)	
Niben101Scf04207g00006.1			Unknown protein		
Niben101Scf06376g05006.1	sp|Q8L7E9|MCAC1_ARATH	***-	Protein MID1-COMPLEMENTING ACTIVITY 1	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf02909g10008.1	sp|Q9STF0|LRKS3_ARATH	****	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10388g01003.1	sp|Q6AWW5|Y5262_ARATH	*-*-	Ankyrin repeat-containing protein	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06347g04006.1	sp|Q38834|R13L4_ARATH	*-*-	Disease resistance RPP13-like protein 4	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01670g04003.1	sp|Q5NP36|SYE1_ZYMMO	*-**	Glutamate--tRNA ligase 1	IPR008925 (Aminoacyl-tRNA synthetase, class I, anticodon-binding)	GO:0000049 (tRNA binding)
Niben101Scf10947g01023.1	AT1G19640.1	*-**	jasmonic acid carboxyl methyltransferase LENGTH=389	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf04285g03018.1	sp|Q8GW32|PRE6_ARATH	***-	Transcription factor PRE6	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00046g04007.1	sp|Q9T0D6|PP306_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01785g10006.1	gb|KEH28402.1|	*-*-	plant/F17J16-140 protein [Medicago truncatula]		
Niben101Scf04875g05010.1	ref|XP_007027522.1|	***-	F-box and Leucine Rich Repeat domains containing protein, putative isoform 2 [Theobroma cacao] gb|EOY08024.1| F-box and Leucine Rich Repeat domains containing protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf04177g00006.1	ref|WP_025555911.1|	*-**	GCN5 family acetyltransferase [Vibrio parahaemolyticus]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf07395g00031.1	sp|P54211|PMA1_DUNBI	*-**	Plasma membrane ATPase	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf00247g04005.1	sp|Q8WNV7|DHRS4_PIG	****	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf09698g00024.1	sp|P51105|DFRA_GERHY	***-	Dihydroflavonol-4-reductase	IPR016040 (NAD(P)-binding domain)	
Niben101Scf29530g00008.1	sp|F4JI46|RGAP2_ARATH	***-	Rho GTPase-activating protein 2	IPR000095 (CRIB domain), IPR008936 (Rho GTPase activation protein)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf04438g02002.1			Unknown protein		
Niben101Scf00377g00001.1	AT1G79000.2	****	histone acetyltransferase of the CBP family 1 LENGTH=1741	IPR000197 (Zinc finger, TAZ-type), IPR000433 (Zinc finger, ZZ-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013178 (Histone H3-K56 acetyltransferase, RTT109)	GO:0003712 (transcription cofactor activity), GO:0004402 (histone acetyltransferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf08162g00010.1	sp|Q3J3F1|NUOH1_RHOS4	--*-	NADH-quinone oxidoreductase subunit H 1	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf03197g04001.1			Unknown protein		
Niben101Scf06968g00020.1	AT3G60390.1	***-	homeobox-leucine zipper protein 3 LENGTH=315	IPR003106 (Leucine zipper, homeobox-associated), IPR006712 (HD-ZIP protein, N-terminal), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02073g07002.1	AT1G33800.1	***-	Protein of unknown function (DUF579) LENGTH=297	IPR021148 (Putative polysaccharide biosynthesis protein)	
Niben101Scf15067g00003.1	AT4G05110.1	****	equilibrative nucleoside transporter 6 LENGTH=418	IPR002259 (Equilibrative nucleoside transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005337 (nucleoside transmembrane transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf03694g01005.1	AT1G61870.1	***-	pentatricopeptide repeat 336 LENGTH=408	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf11896g00001.1	sp|P08742|COX1_MAIZE	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09559g02010.1	AT3G58610.1	*-**	ketol-acid reductoisomerase LENGTH=591	IPR013023 (Acetohydroxy acid isomeroreductase), IPR016040 (NAD(P)-binding domain)	GO:0004455 (ketol-acid reductoisomerase activity), GO:0008652 (cellular amino acid biosynthetic process), GO:0009082 (branched-chain amino acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08127g01011.1	ref|XP_002311412.1|	*-*-	18S pre-rib gar2 [Populus trichocarpa]		
Niben101Scf02207g08001.1	sp|Q8VYR7|BOR1_ARATH	***-	Boron transporter 1	IPR003020 (Bicarbonate transporter, eukaryotic)	GO:0005452 (inorganic anion exchanger activity), GO:0006820 (anion transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf10336g03011.1			Unknown protein		
Niben101Scf05824g08003.1	sp|Q9C5N2|TMN9_ARATH	***-	Transmembrane 9 superfamily member 9	IPR004240 (Nonaspanin (TM9SF)), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane)
Niben101Scf04216g04005.1	AT1G09960.1	***-	sucrose transporter 4 LENGTH=510	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf00063g00013.1			Unknown protein		
Niben101Scf01411g00018.1	sp|O34641|YTRB_BACSU	*-**	ABC transporter ATP-binding protein YtrB	IPR003959 (ATPase, AAA-type, core), IPR026082 (ABC transporter A, ABCA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005215 (transporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf07586g00014.1			Unknown protein		
Niben101Scf01961g00012.1	AT1G71680.1	***-	Transmembrane amino acid transporter family protein LENGTH=448	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf11124g01028.1	ref|WP_008319277.1|	*-*-	Protein of unknown function (DUF2488) [Leptolyngbya sp. PCC 6406]	IPR019616 (Uncharacterised protein family Ycf54)	
Niben101Scf06344g00005.1	AT2G36770.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01695g00003.1	sp|Q75LL6|TADA2_ORYSJ	***-	Transcriptional adapter ADA2	IPR009057 (Homeodomain-like), IPR016827 (Transcriptional adaptor 2)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06170g00014.1	AT4G37220.1	***-	Cold acclimation protein WCOR413 family LENGTH=202	IPR008892 (Cold acclimation WCOR413)	
Niben101Scf08707g00002.1			Unknown protein		
Niben101Scf09321g00010.1	sp|Q8XXQ2|NUOB_RALSO	****	NADH-quinone oxidoreductase subunit B	IPR006138 (NADH-ubiquinone oxidoreductase, 20 Kd subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0048038 (quinone binding), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04464g02002.1	ref|XP_007014955.1|	***-	Far1-related sequence 4 isoform 3 [Theobroma cacao] gb|EOY32574.1| Far1-related sequence 4 isoform 3 [Theobroma cacao]	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type), IPR018289 (MULE transposase domain)	GO:0008270 (zinc ion binding)
Niben101Scf01328g01020.1	ref|XP_007012652.1|	*-*-	Ankyrin repeat-containing-like protein [Theobroma cacao] gb|EOY30271.1| Ankyrin repeat-containing-like protein [Theobroma cacao]	IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	
Niben101Scf01006g05004.1	sp|F4IRQ5|THG1_ARATH	*-**	tRNA(His) guanylyltransferase 1	IPR007537 (tRNAHis guanylyltransferase Thg1), IPR025845 (Thg1 C-terminal domain)	GO:0000287 (magnesium ion binding), GO:0006400 (tRNA modification), GO:0008193 (tRNA guanylyltransferase activity)
Niben101Scf02114g04009.1	gb|ABA97292.1|	--*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf01455g01021.1	sp|Q4R5M2|CATB_MACFA	***-	Cathepsin B	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity), GO:0050790 (regulation of catalytic activity)
Niben101Scf00215g03004.1	AT5G61030.1	*-**	glycine-rich RNA-binding protein 3 LENGTH=309	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04436g15043.1	sp|Q9FIX3|PP407_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf10575g00009.1	gb|AGY62799.1|	***-	orf148 (mitochondrion) [Eruca vesicaria subsp. sativa] gb|AHY20342.1| hypothetical protein (mitochondrion) (mitochondrion) [Brassica juncea var. tumida] gb|AIC83308.1| orf148 (mitochondrion) [Brassica oleracea var. botrytis]		
Niben101Scf00343g00002.1	gb|KEH20638.1|	*-**	transcription termination factor family protein [Medicago truncatula]	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00454g02004.1	sp|A8G9G5|RSMC_SERP5	--**	Ribosomal RNA small subunit methyltransferase C	IPR002052 (DNA methylase, N-6 adenine-specific, conserved site), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003676 (nucleic acid binding), GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf19957g00012.1	gb|AAW30286.1|	*-**	cytochrome c biogenesis ccmF [Amborella trichopoda]	IPR003569 (Cytochrome c-type biogenesis protein CcbS)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf02953g01007.1			Unknown protein		
Niben101Scf04196g00005.1	sp|P69250|RBS1_NICSY	***-	Ribulose bisphosphate carboxylase small chain, chloroplastic	IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain)	
Niben101Scf05574g01004.1	sp|P49598|P2C37_ARATH	****	Protein phosphatase 2C 37	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf16148g01013.1	sp|B6K2N0|NAR1_SCHJY	***-	Cytosolic Fe-S cluster assembly factor NAR1 homolog	IPR009016 (Iron hydrogenase)	
Niben101Scf02375g02003.1	ref|XP_002301132.1|	****	integral membrane family protein [Populus trichocarpa] gb|ABK92649.1| unknown [Populus trichocarpa] gb|EEE80405.1| integral membrane family protein [Populus trichocarpa]	IPR005352 (Erg28)	GO:0016021 (integral component of membrane)
Niben101Scf22677g00006.1	ref|NP_001049319.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf04918g00013.1	sp|Q9SDZ9|PPAF2_IPOBA	****	Purple acid phosphatase 2	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf08041g02005.1	ref|NP_001078298.1|	--*-	protein ROTUNDIFOLIA like 7 [Arabidopsis thaliana] tpg|DAA02279.1| TPA_exp: DVL8 [Arabidopsis thaliana] gb|AEE79395.1| protein rotundifolia like 7 [Arabidopsis thaliana]	IPR012552 (DVL)	
Niben101Scf10234g00001.1	sp|Q9STF0|LRKS3_ARATH	*-**	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00215g05003.1	sp|P55993|RPOD_HELPY	*-**	RNA polymerase sigma factor RpoD	IPR014284 (RNA polymerase sigma-70 like domain), IPR016262 (RNA polymerase sigma factor, SigB/SigC/SigD, plastid)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Scf00854g05060.1			Unknown protein		
Niben101Scf05372g00008.1	sp|Q2HJ10|ZNT2_MOUSE	****	Zinc transporter 2	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00690g07001.1	sp|Q9M0X5|CRK25_ARATH	*-**	Cysteine-rich receptor-like protein kinase 25	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00381g09020.1	AT1G21630.2	****	Calcium-binding EF hand family protein LENGTH=1247	IPR000261 (EPS15 homology (EH)), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding)
Niben101Scf00375g03007.1	emb|CDX73606.1|	--*-	BnaC08g23970D [Brassica napus]		
Niben101Scf03049g07007.1			Unknown protein		
Niben101Scf00339g06014.1	sp|P40972|PLY_TOBAC	*-*-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor)	
Niben101Scf00133g04021.1	AT5G05470.1	****	eukaryotic translation initiation factor 2 alpha subunit LENGTH=344	IPR011488 (Translation initiation factor 2, alpha subunit), IPR012340 (Nucleic acid-binding, OB-fold), IPR024054 (Translation initiation factor 2, alpha subunit, middle domain), IPR024055 (Translation initiation factor 2, alpha subunit, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005850 (eukaryotic translation initiation factor 2 complex)
Niben101Scf04964g00007.1	sp|Q6DHL5|LRC57_DANRE	--*-	Leucine-rich repeat-containing protein 57		
Niben101Scf01391g04001.1	AT4G13110.1	*-*-	BSD domain-containing protein LENGTH=316	IPR005607 (BSD)	
Niben101Scf09696g01114.1	sp|Q597E8|CYB_LAMBR	*-*-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity)
Niben101Scf13741g02010.1	sp|Q39262|ZFP3_ARATH	*-*-	Zinc finger protein 3	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf02396g00004.1			Unknown protein		
Niben101Scf02387g03005.1	sp|P48368|CRTE_CYAPA	***-	Geranylgeranyl diphosphate synthase	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf05674g05007.1	ref|XP_003613902.1|	*-*-	Acylamino-acid-releasing enzyme [Medicago truncatula]	IPR002471 (Peptidase S9, serine active site), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf18039g00001.1	AT2G31840.1	*-*-	Thioredoxin superfamily protein LENGTH=350	IPR012336 (Thioredoxin-like fold)	
Niben101Scf01374g01016.1	sp|Q9SUI6|PSAH2_ARATH	****	Photosystem I reaction center subunit VI-2, chloroplastic	IPR004928 (Photosystem I PsaH, reaction centre subunit VI), IPR023833 (Signal peptide, camelysin), IPR029027 (Single alpha-helix domain)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf07402g00014.1	sp|Q9BTZ2|DHRS4_HUMAN	****	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf03240g00008.1	sp|Q9S7H5|SCL21_ARATH	***-	Scarecrow-like protein 21	IPR005202 (Transcription factor GRAS), IPR030006 (Transcriptional factor DELLA)	GO:0000989 (transcription factor binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf08415g01008.1	sp|Q8N567|ZCHC9_HUMAN	*-**	Zinc finger CCHC domain-containing protein 9	IPR001878 (Zinc finger, CCHC-type), IPR025836 (Zinc knuckle CX2CX4HX4C)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf00752g03014.1	sp|Q9FHW9|GDL90_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf03018g16009.1	gb|KFB84164.1|	***-	alpha/beta hydrolase [Calothrix sp. 336/3]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02562g00016.1	sp|Q9SK27|ENL1_ARATH	--*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	
Niben101Scf00104g04007.1	AT5G26110.1	****	Protein kinase superfamily protein LENGTH=226	IPR011009 (Protein kinase-like domain), IPR022495 (Serine/threonine-protein kinase Bud32)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00662g01002.1	sp|Q6EW58|RPOC2_NYMAL	*-**	DNA-directed RNA polymerase subunit beta''	IPR007066 (RNA polymerase Rpb1, domain 3), IPR007081 (RNA polymerase Rpb1, domain 5)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf00415g07011.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf03446g14009.1	emb|CDY05124.1|	***-	BnaC03g29220D [Brassica napus]		
Niben101Scf04989g01023.1	sp|Q9LJQ9|CX171_ARATH	****	Cytochrome c oxidase copper chaperone 1	IPR007745 (Cytochrome c oxidase copper chaperone), IPR009069 (Cysteine alpha-hairpin motif superfamily)	GO:0005507 (copper ion binding), GO:0005758 (mitochondrial intermembrane space), GO:0006825 (copper ion transport), GO:0016531 (copper chaperone activity)
Niben101Scf00711g00001.1			Unknown protein	IPR029071 (Ubiquitin-related domain)	
Niben101Scf05749g02025.1	emb|CDY69041.1|	***-	BnaAnng29180D [Brassica napus]		
Niben101Scf07706g00008.1	sp|P53607|ILVA_BURM1	*-*-	L-threonine dehydratase biosynthetic IlvA	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme)	
Niben101Scf03170g01013.1	AT3G07150.1	***-	unknown protein; Has 19 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=199		
Niben101Scf04872g00006.1	AT5G64600.1	***-	O-fucosyltransferase family protein LENGTH=522	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf01316g03004.1	AT5G65660.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=136		
Niben101Scf03497g00011.1	sp|Q9LL84|DNLI4_ARATH	*-**	DNA ligase 4	IPR001357 (BRCT domain), IPR012340 (Nucleic acid-binding, OB-fold), IPR029710 (DNA ligase 4)	GO:0003677 (DNA binding), GO:0003910 (DNA ligase (ATP) activity), GO:0005524 (ATP binding), GO:0006281 (DNA repair), GO:0051103 (DNA ligation involved in DNA repair)
Niben101Scf01722g03009.1	ref|WP_017309160.1|	*-**	Ureidoglycolate hydrolase [Fischerella sp. PCC 9339]	IPR011051 (RmlC-like cupin domain)	GO:0004848 (ureidoglycolate hydrolase activity)
Niben101Scf10688g02006.1	sp|Q9ZQG9|E1314_ARATH	***-	Glucan endo-1,3-beta-glucosidase 14	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf17290g01006.1	sp|P82787|DEF19_ARATH	***-	Defensin-like protein 19	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf17802g00009.1	AT3G62200.1	*-*-	Putative endonuclease or glycosyl hydrolase LENGTH=673	IPR024768 (Meiosis arrest female protein 1), IPR029060 (PIN domain-like)	GO:0005777 (peroxisome), GO:0010468 (regulation of gene expression)
Niben101Scf00279g00007.1	sp|Q5ISE2|Z36L3_MOUSE	--*-	Zinc finger protein 36, C3H1 type-like 3	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf14325g00002.1	sp|A0M527|MURG_GRAFK	****	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	IPR007235 (Glycosyl transferase, family 28, C-terminal), IPR009695 (Diacylglycerol glucosyltransferase, N-terminal)	GO:0005975 (carbohydrate metabolic process), GO:0009247 (glycolipid biosynthetic process), GO:0016758 (transferase activity, transferring hexosyl groups), GO:0030246 (carbohydrate binding), GO:0030259 (lipid glycosylation)
Niben101Scf36703g00012.1	sp|Q68EX9|CHID1_XENLA	*-*-	Chitinase domain-containing protein 1	IPR017853 (Glycoside hydrolase superfamily)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf10767g03025.1	dbj|BAB84017.1|	--*-	disease resistance gene [Arabidopsis thaliana]		
Niben101Scf03023g00006.1			Unknown protein		
Niben101Scf09620g05001.1	sp|Q3A9U1|RS13_CARHZ	***-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH), IPR027437 (30s ribosomal protein S13, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02111g18003.1	gb|AIT42248.1|	****	invertase inhibitor [Solanum tuberosum]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00872g04003.1	sp|D2XNQ8|FLOT1_MEDTR	***-	Flotillin-like protein 1	IPR001107 (Band 7 protein)	
Niben101Scf09649g00011.1	gb|ACG48000.1|	***-	holocarboxylase synthetase [Zea mays]	IPR016549 (Uncharacterised conserved protein UCP009193)	
Niben101Scf00539g04003.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09123g01015.1	sp|Q9FIH1|FB281_ARATH	--*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf11362g01013.1	AT1G28510.1	***-	Optic atrophy 3 protein (OPA3) LENGTH=171	IPR010754 (Optic atrophy 3-like)	
Niben101Scf02738g07006.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06091g06020.1	sp|P49972|SR542_SOLLC	****	Signal recognition particle 54 kDa protein 2	IPR006325 (Signal recognition particle, SRP54 subunit, eukaryotic), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0048500 (signal recognition particle)
Niben101Scf13962g01007.1	AT4G18700.1	****	CBL-interacting protein kinase 12 LENGTH=489	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02911g05006.1	sp|Q3ZCB8|EMC3_BOVIN	****	ER membrane protein complex subunit 3	IPR002809 (Protein of unknown function DUF106, transmembrane)	GO:0016020 (membrane)
Niben101Scf07066g02002.1	emb|CDX98312.1|	*-*-	BnaC06g16730D [Brassica napus]		
Niben101Scf03660g01001.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03734g04015.1	sp|O65743|RL24_CICAR	***-	60S ribosomal protein L24	IPR000988 (Ribosomal protein L24e-related), IPR023441 (Ribosomal protein L24e domain), IPR023442 (Ribosomal protein L24e, conserved site)	
Niben101Scf12159g06005.1	AT1G03070.1	***-	Bax inhibitor-1 family protein LENGTH=247	IPR006214 (Bax inhibitor 1-related)	
Niben101Scf02929g05012.1			Unknown protein		
Niben101Scf08972g00005.1	sp|Q9ZPY7|XPO2_ARATH	***-	Exportin-2	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf06200g03014.1	ref|XP_002509435.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF50822.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf18636g00004.1	AT4G21480.1	****	sugar transporter protein 12 LENGTH=502	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03141g07006.1	ref|XP_002510642.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52829.1| conserved hypothetical protein [Ricinus communis]	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf07939g00006.1	sp|Q93Z08|E136_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 6	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf02469g00011.1			Unknown protein		
Niben101Scf02160g06017.1	AT2G07739.1	*-*-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf02379g03005.1	sp|P27612|PLAP_MOUSE	***-	Phospholipase A-2-activating protein	IPR013535 (PUL), IPR015155 (PLAA family ubiquitin binding, PFU), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01393g00001.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf10708g01006.1	AT2G35620.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=589	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Scf00339g14004.1	sp|Q9SP55|VATG_CITLI	****	V-type proton ATPase subunit G	IPR005124 (Vacuolar (H+)-ATPase G subunit)	GO:0015992 (proton transport), GO:0016471 (vacuolar proton-transporting V-type ATPase complex), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances)
Niben101Scf08586g02005.1	sp|Q8TRC4|EF1A_METAC	***-	Elongation factor 1-alpha	IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf04040g04006.1	sp|Q6DII2|SRSF1_XENTR	*-*-	Serine/arginine-rich splicing factor 1	IPR001878 (Zinc finger, CCHC-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02435g01016.1	AT4G19420.1	*-*-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf03271g02005.1	sp|Q9FM65|FLA1_ARATH	*-*-	Fasciclin-like arabinogalactan protein 1	IPR000782 (FAS1 domain)	
Niben101Scf01553g02003.1	sp|Q9C652|RBP1_ARATH	*-**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf16156g00005.1	sp|Q8RYM9|LAC2_ORYSJ	***-	Laccase-2	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf24384g00009.1	sp|P92985|RBP1C_ARATH	****	Ran-binding protein 1 homolog c	IPR011993 (Pleckstrin homology-like domain)	GO:0046907 (intracellular transport)
Niben101Scf02249g01013.1	sp|Q5U2S3|ZUFSP_RAT	*-*-	Zinc finger with UFM1-specific peptidase domain protein	IPR012462 (Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2)	
Niben101Scf17882g00004.1	ref|YP_005090400.1|	***-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf06674g01002.1	sp|P16394|HSP70_BRELC	*-*-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family)	
Niben101Scf20124g00022.1	sp|O66119|ODP2_ZYMMO	***-	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	IPR000089 (Biotin/lipoyl attachment), IPR004167 (E3-binding domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf00862g00008.1	AT2G21530.1	*-*-	SMAD/FHA domain-containing protein LENGTH=209	IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf14591g01010.1	ref|WP_032867240.1|	*-*-	glutathione S-transferase [Acinetobacter baumannii]		
Niben101Scf02296g00019.1	sp|Q54GN8|NSA2_DICDI	***-	Ribosome biogenesis protein NSA2 homolog	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	
Niben101Scf05123g02014.1	sp|Q9SSA7|GLIP5_ARATH	***-	GDSL esterase/lipase 5	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00298g00001.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02325g01005.1			Unknown protein		
Niben101Scf07742g01016.1	sp|Q9W720|UCP2_DANRE	***-	Mitochondrial uncoupling protein 2	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf09595g00001.1	emb|CDX76853.1|	*-*-	BnaC08g34390D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf08426g01001.1	sp|Q5BIS9|AAKB1_BOVIN	--*-	5'-AMP-activated protein kinase subunit beta-1	IPR013783 (Immunoglobulin-like fold), IPR014756 (Immunoglobulin E-set), IPR030066 (Putative phosphatase LSF1, chloroplastic)	GO:0005983 (starch catabolic process)
Niben101Scf03738g00006.1	AT1G42550.1	***-	plastid movement impaired1 LENGTH=843	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf04283g03002.1	sp|P19407|OEC6_SPIOL	--*-	6.7 kDa chloroplast outer envelope membrane protein		
Niben101Scf04487g06006.1			Unknown protein		
Niben101Scf01399g00014.1	sp|A4SIE1|GLGA_AERS4	*-*-	Glycogen synthase	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf02492g00007.1	sp|Q9LUR0|CNDH2_ARATH	*-*-	Condensin-2 complex subunit H2		
Niben101Scf01189g04009.1	sp|Q4V8K2|CTBL1_RAT	***-	Beta-catenin-like protein 1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00684g01002.1	sp|Q07761|RL23A_TOBAC	***-	60S ribosomal protein L23a	IPR005633 (Ribosomal protein L23/L25, N-terminal), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10126g00017.1	gb|AES87033.2|	*-*-	DUF674 family protein [Medicago truncatula]	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf08566g00002.1	AT1G22400.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00126g04006.1	AT1G75710.1	***-	C2H2-like zinc finger protein LENGTH=462	IPR007087 (Zinc finger, C2H2), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain)	GO:0003950 (NAD+ ADP-ribosyltransferase activity), GO:0046872 (metal ion binding)
Niben101Scf20596g00004.1	sp|Q86YN1|DOPP1_HUMAN	***-	Dolichyldiphosphatase 1	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Scf05683g00017.1	gb|AAA80307.1|	*-*-	orf154 [Petunia axillaris subsp. parodii]		
Niben101Scf05709g01016.1	sp|Q94758|DYL1_SCHMA	***-	Dynein light chain	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Scf00833g01001.1	AT1G22110.1	*-*-	structural constituent of ribosome LENGTH=282	IPR021410 (The fantastic four family)	
Niben101Scf01948g00002.1	sp|Q9K192|TRPC_NEIMB	****	Indole-3-glycerol phosphate synthase	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004425 (indole-3-glycerol-phosphate synthase activity), GO:0006568 (tryptophan metabolic process), GO:0008152 (metabolic process)
Niben101Scf02174g02008.1	dbj|BAD95306.1|	--*-	DNA polymerase epsilon subunit B -like protein [Arabidopsis thaliana]	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like), IPR024639 (DNA polymerase epsilon subunit B, N-terminal)	GO:0003824 (catalytic activity), GO:0046872 (metal ion binding)
Niben101Scf00046g07010.1	ref|WP_014328084.1|	*-**	ATPase [Sinorhizobium fredii] ref|YP_005188430.1| ATP synthase mitochondrial F1 complex assembly factor 2 ATP12 [Sinorhizobium fredii HH103] emb|CCE95605.1| ATP synthase mitochondrial F1 complex assembly factor 2 ATP12 homolog; Flags: Precursor [Sinorhizobium fredii HH103]	IPR011419 (ATP12, ATPase F1F0-assembly protein), IPR023335 (Orthogonal Bundle domain in ATP12)	GO:0043461 (proton-transporting ATP synthase complex assembly)
Niben101Scf15047g00009.1	sp|Q39013|NAC2_ARATH	--*-	NAC domain-containing protein 2	IPR001279 (Beta-lactamase-like), IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01211g01001.1	sp|P56758|ATPI_ARATH	****	ATP synthase subunit a, chloroplastic	IPR000568 (ATPase, F0 complex, subunit A), IPR001865 (Ribosomal protein S2), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf17787g00003.1	AT5G47635.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=164		
Niben101Scf11480g02007.1	sp|Q9XGI7|NAS_SOLLC	****	Nicotianamine synthase	IPR004298 (Nicotianamine synthase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0030410 (nicotianamine synthase activity), GO:0030418 (nicotianamine biosynthetic process)
Niben101Scf00784g02020.1	sp|P05065|ALDOA_RAT	****	Fructose-bisphosphate aldolase A	IPR000741 (Fructose-bisphosphate aldolase, class-I), IPR013785 (Aldolase-type TIM barrel), IPR029768 (Fructose-bisphosphate aldolase class-I active site)	GO:0003824 (catalytic activity), GO:0004332 (fructose-bisphosphate aldolase activity), GO:0006096 (glycolytic process)
Niben101Scf04748g02011.1	ref|XP_002515369.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF46818.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf02182g21007.1	sp|O80340|ERF78_ARATH	****	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01394g01005.1			Unknown protein		
Niben101Scf00304g04002.1	sp|Q5SUS0|FBW10_MOUSE	*-*-	F-box/WD repeat-containing protein 10	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf09123g01001.1	sp|Q22516|CHD3_CAEEL	--**	Chromodomain-helicase-DNA-binding protein 3 homolog	IPR000253 (Forkhead-associated (FHA) domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf14440g00003.1	sp|B0R3A3|SYP_HALS3	****	Proline--tRNA ligase	IPR002316 (Proline-tRNA ligase, class IIa), IPR017449 (Prolyl-tRNA synthetase, class II)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004827 (proline-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006433 (prolyl-tRNA aminoacylation)
Niben101Scf01283g01021.1			Unknown protein		
Niben101Scf03647g03021.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf16205g00002.1	sp|O82199|C3H20_ARATH	***-	Zinc finger CCCH domain-containing protein 20	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf00023g06002.1	sp|A6ZT19|UBA4_YEAS7	****	Adenylyltransferase and sulfurtransferase UBA4	IPR001763 (Rhodanese-like domain), IPR016040 (NAD(P)-binding domain), IPR028885 (Adenylyltransferase and sulfurtransferase MOCS3/Uba4)	GO:0002143 (tRNA wobble position uridine thiolation), GO:0003824 (catalytic activity), GO:0004792 (thiosulfate sulfurtransferase activity), GO:0005829 (cytosol)
Niben101Scf07510g00018.1	sp|Q9P0L0|VAPA_HUMAN	--**	Vesicle-associated membrane protein-associated protein A	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf08047g03024.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08466g00007.1	AT3G22680.1	*-**	RNA-DIRECTED DNA METHYLATION 1 LENGTH=163	IPR015270 (Protein RDM1)	GO:0005634 (nucleus), GO:0044030 (regulation of DNA methylation)
Niben101Scf04918g10004.1			Unknown protein		
Niben101Scf01190g04005.1	AT4G34660.1	***-	SH3 domain-containing protein LENGTH=368	IPR001452 (SH3 domain)	GO:0005515 (protein binding)
Niben101Scf02346g02007.1	sp|P33607|NUOL_ECOLI	*-*-	NADH-quinone oxidoreductase subunit L	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf01727g09001.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05553g06002.1	AT1G22400.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01933g02008.1	sp|Q9SVF3|HPP5_ARATH	*-*-	Heptahelical transmembrane protein 5	IPR004254 (AdipoR/Haemolysin-III-related)	GO:0016021 (integral component of membrane)
Niben101Scf03714g03011.1	sp|A9HEL1|FOLD_GLUDA	***-	Bifunctional protein FolD	IPR000672 (Tetrahydrofolate dehydrogenase/cyclohydrolase)	GO:0003824 (catalytic activity), GO:0004488 (methylenetetrahydrofolate dehydrogenase (NADP+) activity), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf01394g02004.1	AT5G11950.1	***-	Putative lysine decarboxylase family protein LENGTH=216	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf04134g01016.1	gb|ABB83644.1|	--*-	PIF-like transposase [Daucus carota]		
Niben101Scf01143g10001.1	AT3G15030.1	*-*-	TCP family transcription factor 4 LENGTH=420	IPR005333 (Transcription factor, TCP)	
Niben101Scf08721g00002.1	sp|Q96NW7|LRRC7_HUMAN	*-*-	Leucine-rich repeat-containing protein 7	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf20828g00003.1	sp|Q9XGY4|TIM8_ARATH	***-	Mitochondrial import inner membrane translocase subunit TIM8	IPR004217 (Tim10/DDP family zinc finger)	
Niben101Scf03819g02008.1	AT3G01015.1	***-	TPX2 (targeting protein for Xklp2) protein family LENGTH=488	IPR009675 (TPX2), IPR027329 (TPX2, C-terminal domain)	GO:0005819 (spindle), GO:0005874 (microtubule), GO:0007067 (mitotic nuclear division)
Niben101Scf06869g03007.1	sp|Q39117|TGT2_ARATH	*-*-	Trihelix transcription factor GT-2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00471g03009.1	AT5G33340.1	*-*-	Eukaryotic aspartyl protease family protein LENGTH=437	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02217g01007.1	AT4G32920.1	***-	glycine-rich protein LENGTH=1432		
Niben101Scf06189g04005.1	AT2G29590.1	***-	Thioesterase superfamily protein LENGTH=158		
Niben101Scf02632g06008.1	AT3G48800.1	*-*-	Sterile alpha motif (SAM) domain-containing protein LENGTH=278	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf04384g00008.1	AT4G27430.1	***-	COP1-interacting protein 7 LENGTH=1058		
Niben101Scf02517g06010.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf03954g00023.1	sp|B8ACH9|IPCS_ORYSI	--*-	Phosphatidylinositol:ceramide inositolphosphotransferase	IPR025749 (Sphingomyelin synthase-like domain)	
Niben101Scf04403g02004.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01750g14007.1	sp|Q55276|LCYB_SYNE7	***-	Lycopene beta cyclase	IPR008671 (Lycopene cyclase-type, FAD-binding)	GO:0016117 (carotenoid biosynthetic process), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen)
Niben101Scf02215g01004.1	sp|Q9LFT0|TBL19_ARATH	***-	Protein trichome birefringence-like 19	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf05824g13011.1	sp|P49211|RL321_ARATH	***-	60S ribosomal protein L32-1	IPR001515 (Ribosomal protein L32e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00904g03002.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00765g01004.1	sp|Q2V4F9|SPXM1_ARATH	*-*-	SPX domain-containing membrane protein		
Niben101Scf05617g01020.1	sp|Q9WTL2|RAB25_MOUSE	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf17490g00020.1	sp|Q9C866|PPR65_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07775g00006.1	AT1G21390.1	*-*-	embryo defective 2170 LENGTH=248		
Niben101Scf36042g00001.1	gb|AAF79812.1|AC020646_35	*-*-	T32E20.6 [Arabidopsis thaliana]		
Niben101Scf03062g02003.1	ref|NP_001030871.1|	*-*-	biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana] gb|AEE79483.1| biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana]	IPR011053 (Single hybrid motif)	
Niben101Scf03512g02004.1	AT1G65430.1	***-	IBR domain-containing protein LENGTH=567	IPR001876 (Zinc finger, RanBP2-type), IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf10970g00001.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf12428g00010.1			Unknown protein		
Niben101Scf05688g08007.1	sp|Q24JL3|STR2_ARATH	****	Thiosulfate/3-mercaptopyruvate sulfurtransferase 2	IPR001763 (Rhodanese-like domain)	GO:0004792 (thiosulfate sulfurtransferase activity)
Niben101Scf02217g05009.1	sp|P97377|CDK2_MOUSE	****	Cyclin-dependent kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05017g06022.1			Unknown protein		
Niben101Scf06151g03006.1	sp|Q9XFH4|DDM1_ARATH	*-**	ATP-dependent DNA helicase DDM1	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029295 (Snf2 ATP coupling domain)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0042393 (histone binding)
Niben101Scf02437g03005.1	sp|P07753|PSBA_CHLRE	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf02375g01012.1	sp|Q9SUG3|ITPK2_ARATH	*-**	Inositol-tetrakisphosphate 1-kinase 2	IPR008656 (Inositol-tetrakisphosphate 1-kinase)	GO:0000287 (magnesium ion binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0032957 (inositol trisphosphate metabolic process), GO:0047325 (inositol tetrakisphosphate 1-kinase activity), GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity), GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
Niben101Scf01232g03009.1	ref|XP_002513646.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF49049.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf09706g00006.1	sp|O15116|LSM1_HUMAN	*-*-	U6 snRNA-associated Sm-like protein LSm1	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf01462g01003.1	sp|Q9SZL8|FRS5_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 5	IPR007527 (Zinc finger, SWIM-type), IPR018289 (MULE transposase domain)	GO:0008270 (zinc ion binding)
Niben101Scf08445g02022.1	sp|A7M8Z6|PSBD_CUSGR	*-**	Photosystem II D2 protein	IPR000484 (Photosynthetic reaction centre, L/M), IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0009772 (photosynthetic electron transport in photosystem II), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf17701g01014.1	sp|Q84J37|LAC15_ARATH	***-	Laccase-15	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07437g01012.1	AT1G70000.1	***-	myb-like transcription factor family protein LENGTH=261	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02902g01009.1	gb|KEH24827.1|	***-	CDK-activating kinase assembly factor MAT1, putative [Medicago truncatula]		
Niben101Scf04231g02012.1	sp|Q8TEU7|RPGF6_HUMAN	--*-	Rap guanine nucleotide exchange factor 6	IPR001478 (PDZ domain)	GO:0005515 (protein binding)
Niben101Scf06939g05008.1	AT1G72210.1	***-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=320	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00573g05013.1	AT5G58730.1	***-	pfkB-like carbohydrate kinase family protein LENGTH=353	IPR029056 (Ribokinase-like)	GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf05469g02017.1	sp|O49686|PYR1_ARATH	***-	Abscisic acid receptor PYR1	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf32704g00002.1	AT5G02460.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=399	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg12579g00001.1	AT1G76630.2	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=1168	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04792g01005.1	sp|Q9SGP6|GRXC9_ARATH	***-	Glutaredoxin-C9	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf06301g01001.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf07223g00013.1	gb|AFV46172.1|	--*-	spelt factor protein [Triticum aestivum]		
Niben101Scf06556g00007.1	sp|Q9NVI1|FANCI_HUMAN	*-*-	Fanconi anemia group I protein	IPR026171 (Fanconi anemia group I protein), IPR029308 (FANCI solenoid 1 domain), IPR029310 (FANCI helical domain 1), IPR029312 (FANCI helical domain 2), IPR029314 (FANCI solenoid 4 domain), IPR029315 (FANCI solenoid 2 domain)	GO:0006281 (DNA repair)
Niben101Scf00161g03008.1			Unknown protein		
Niben101Scf01526g05005.1	AT4G17960.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=154		
Niben101Scf06435g02005.1	sp|B9JD44|NUOC_AGRRK	****	NADH-quinone oxidoreductase subunit C	IPR001268 (NADH:ubiquinone oxidoreductase, 30kDa subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0055114 (oxidation-reduction process)
Niben101Scf06996g02036.1	AT3G15660.1	***-	glutaredoxin 4 LENGTH=169	IPR004480 (Monothiol glutaredoxin-related), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf05937g02003.1	sp|Q07954|LRP1_HUMAN	--*-	Prolow-density lipoprotein receptor-related protein 1		
Niben101Scf03291g00007.1	ref|XP_002532338.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF30040.1| conserved hypothetical protein [Ricinus communis]	IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Scf02790g01015.1	dbj|BAJ72665.1|	--*-	ethylene response factor 6a [Nicotiana tabacum]		
Niben101Scf05961g02036.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02485g01014.1	AT5G19010.1	****	mitogen-activated protein kinase 16 LENGTH=567	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03894g01006.1	gb|KEH40129.1|	--*-	erythronate-4-phosphate dehydrogenase family protein [Medicago truncatula]		
Niben101Scf08015g01002.1			Unknown protein		
Niben101Scf03224g06007.1	AT1G80510.1	*-*-	Transmembrane amino acid transporter family protein LENGTH=489	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Ctg12694g00003.1	ref|XP_007026671.1|	*-*-	Transducin family protein / WD-40 repeat family protein, putative isoform 3 [Theobroma cacao] gb|EOY07173.1| Transducin family protein / WD-40 repeat family protein, putative isoform 3 [Theobroma cacao]		
Niben101Scf02216g00003.1	sp|Q9LHJ8|SAP5_ARATH	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	IPR000058 (Zinc finger, AN1-type), IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf09368g02001.1	sp|Q566M8|RN150_DANRE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00133g05001.1	AT5G05480.1	*-*-	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein LENGTH=608		
Niben101Scf12148g03001.1	sp|Q6GFT0|ARSB_STAAR	--**	Arsenical pump membrane protein	IPR004680 (Citrate transporter-like domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf14939g01027.1	sp|P92792|TOM20_SOLTU	***-	Mitochondrial import receptor subunit TOM20	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00143g02012.1	sp|P22128|RAB8_DIPOM	*-*-	Ras-related protein Rab-8	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf08811g00007.1	AT4G26640.2	****	WRKY family transcription factor family protein LENGTH=557	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06779g03007.1	sp|P78968|PPZ_SCHPO	***-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf00151g00006.1	sp|C9S8J9|RRP36_VERA1	***-	rRNA biogenesis protein RRP36	IPR009292 (Protein of unknown function DUF947)	
Niben101Scf06588g02010.1	sp|Q7ZU90|CHD1L_DANRE	*-**	Chromodomain-helicase-DNA-binding protein 1-like	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding)
Niben101Scf05664g04022.1	ref|XP_007013684.1|	***-	Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao] gb|EOY31303.1| Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]		
Niben101Ctg13912g00003.1	AT1G72410.2	*-*-	COP1-interacting protein-related LENGTH=1270		
Niben101Scf08776g02019.1	sp|Q9LYD9|EMF1_ARATH	*-*-	Protein EMBRYONIC FLOWER 1		
Niben101Scf08940g01010.1	AT1G67640.1	***-	Transmembrane amino acid transporter family protein LENGTH=441	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf04103g07017.1	AT5G05820.1	*-*-	Nucleotide-sugar transporter family protein LENGTH=309		
Niben101Ctg09123g00001.1	AT2G01570.1	*-**	GRAS family transcription factor family protein LENGTH=587	IPR021914 (Transcriptional factor DELLA, N-terminal), IPR030006 (Transcriptional factor DELLA)	GO:0000989 (transcription factor binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf01172g11015.1	ref|XP_003638735.1|	***-	Membrane protein, putative [Medicago truncatula]		
Niben101Scf05193g01006.1	sp|O81277|PSK5_ORYSJ	***-	Phytosulfokines 5	IPR009438 (Phytosulfokine)	GO:0005576 (extracellular region), GO:0008083 (growth factor activity), GO:0008283 (cell proliferation)
Niben101Scf14523g00003.1	sp|Q9LL85|WHY1_SOLTU	****	Single-stranded DNA-binding protein WHY1, chloroplastic	IPR013742 (Plant transcription factor)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf21481g00002.1			Unknown protein		
Niben101Scf02440g00004.1	sp|Q8GXT3|BH123_ARATH	*-*-	Transcription factor bHLH123	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03365g00016.1	sp|O23044|PER3_ARATH	*-**	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00662g00011.1	AT1G66540.1	*-*-	Cytochrome P450 superfamily protein LENGTH=386	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00800g01006.1	ref|NP_001105793.1|	*-*-	alkaline alpha galactosidase 1 [Zea mays] alkaline alpha galactosidase 1 [Zea mays]	IPR008811 (Glycosyl hydrolases 36)	
Niben101Scf06245g01013.1	sp|Q9LQQ4|H2B1_ARATH	***-	Histone H2B.1	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf02836g00003.1	sp|Q93Z08|E136_ARATH	***-	Glucan endo-1,3-beta-glucosidase 6	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05177g02006.1	sp|Q0WN60|PPR48_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07937g03012.1	sp|Q0JIC2|GAM1_ORYSJ	*-*-	Transcription factor GAMYB		
Niben101Scf34542g00003.1	sp|Q9LSL1|BH093_ARATH	--*-	Transcription factor bHLH93	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf06094g07001.1	ref|NP_001054228.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf08341g06002.1	AT3G24450.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=140	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf04551g00006.1	AT1G50575.1	***-	Putative lysine decarboxylase family protein LENGTH=306	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf02738g02008.1	sp|Q5RA17|RRP7A_PONAB	*-*-	Ribosomal RNA-processing protein 7 homolog A	IPR024326 (Ribosomal RNA-processing protein 7)	
Niben101Scf03308g02011.1	sp|Q9SU29|UPL5_ARATH	*-*-	E3 ubiquitin-protein ligase UPL5		
Niben101Scf11491g01002.1	sp|Q66HG1|DMTF1_RAT	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02515g00012.1	sp|Q5M8G4|LRC40_XENTR	*-*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0043531 (ADP binding)
Niben101Scf04926g01002.1	sp|Q9FJN9|PABN2_ARATH	--*-	Polyadenylate-binding protein 2		
Niben101Scf05629g01019.1			Unknown protein		
Niben101Scf00143g02013.1	sp|E2RQ15|RAB25_CANFA	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf03206g04001.1	AT5G03230.1	***-	Protein of unknown function, DUF584 LENGTH=166	IPR007608 (Senescence regulator S40)	
Niben101Scf32862g01001.1	ref|NP_001053041.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf08724g04008.1	sp|P41098|RL34_TOBAC	***-	60S ribosomal protein L34	IPR008195 (Ribosomal protein L34Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07883g08002.1	ref|XP_002525136.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF37263.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09151g02003.1	AT1G80270.1	*-*-	PENTATRICOPEPTIDE REPEAT 596 LENGTH=596	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08208g02018.1	sp|Q9SVG4|RETOL_ARATH	--*-	Reticuline oxidase-like protein		
Niben101Scf03138g01010.1	sp|Q14GX0|DNAJ_FRAT1	***-	Chaperone protein DnaJ	IPR012724 (Chaperone DnaJ)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0009408 (response to heat), GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf13118g00004.1	emb|CDP85014.1|	*-**	methyltransferase [Mycobacterium farcinogenes]	IPR007213 (Leucine carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf00539g06024.1	AT1G76060.1	***-	LYR family of Fe/S cluster biogenesis protein LENGTH=157	IPR008011 (Complex 1 LYR protein)	
Niben101Scf05133g06002.1	sp|Q3V1F8|EPHX3_MOUSE	--*-	Epoxide hydrolase 3	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01785g10007.1	sp|A6TSC8|GLGA_ALKMQ	****	Glycogen synthase	IPR011835 (Glycogen/starch synthase, ADP-glucose type)	GO:0009011 (starch synthase activity), GO:0009058 (biosynthetic process), GO:0009250 (glucan biosynthetic process)
Niben101Scf02145g11008.1	gb|KEH36900.1|	***-	F-box plant-like protein, putative [Medicago truncatula]	IPR027949 (Petal formation-expressed)	
Niben101Scf01281g00006.1	AT4G20840.1	****	FAD-binding Berberine family protein LENGTH=539	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02893g02001.1			Unknown protein		
Niben101Scf01526g05006.1	AT2G38695.3	*-*-	unknown protein; Has 56 Blast hits to 54 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=260		
Niben101Scf08597g01033.1	sp|Q62767|DUS4_RAT	*-**	Dual specificity protein phosphatase 4	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity)
Niben101Scf01842g06006.1	AT2G36290.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=364	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00247g04006.1	sp|Q3MHX3|RBM4_BOVIN	*-**	RNA-binding protein 4	IPR002343 (Paraneoplastic encephalomyelitis antigen), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf00151g06003.1	AT5G19820.1	*-*-	ARM repeat superfamily protein LENGTH=1116	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04657g02001.1	sp|Q8VWK4|TRB1_ARATH	****	Telomere repeat-binding factor 1	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf02043g04016.1	sp|Q38879|TRXH2_ARATH	-**-	Thioredoxin H2	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf09792g03013.1	gb|AEB39994.1|	*-**	cytochrome c biogenesis factor N [Funaria hygrometrica]	IPR003567 (Cytochrome c-type biogenesis protein)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf07584g01003.1	sp|P93332|NOD3_MEDTR	*-*-	Bidirectional sugar transporter N3		
Niben101Scf03309g08033.1	sp|Q5QNA6|SCRL2_ORYSJ	*-*-	SCAR-like protein 2	IPR028288 (SCAR/WAVE family)	GO:0005856 (cytoskeleton), GO:0030036 (actin cytoskeleton organization)
Niben101Scf00679g02003.1	AT3G21810.1	*-*-	Zinc finger C-x8-C-x5-C-x3-H type family protein LENGTH=437		
Niben101Scf09467g02011.1	sp|Q7S6J4|HSE1_NEUCR	*-*-	Class E vacuolar protein-sorting machinery protein hse1	IPR008942 (ENTH/VHS)	GO:0006886 (intracellular protein transport)
Niben101Scf06249g02001.1	AT5G16690.1	****	origin recognition complex subunit 3 LENGTH=734	IPR020795 (Origin recognition complex, subunit 3)	GO:0003677 (DNA binding), GO:0005664 (nuclear origin of replication recognition complex), GO:0006260 (DNA replication)
Niben101Ctg15399g00001.1	sp|Q9XJ60|MAD50_ORYSJ	*-*-	MADS-box transcription factor 50	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf02240g06021.1	sp|Q892N8|OBG_CLOTE	*-*-	GTPase Obg	IPR006073 (GTP binding domain), IPR010674 (Nucleolar GTP-binding protein 1, Rossman-fold domain), IPR011619 (Ferrous iron transport protein B, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0015093 (ferrous iron transmembrane transporter activity), GO:0015684 (ferrous iron transport), GO:0016021 (integral component of membrane)
Niben101Scf00851g06027.1	sp|Q0WKZ3|PP105_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf16824g00015.1	AT3G06170.1	***-	Serinc-domain containing serine and sphingolipid biosynthesis protein LENGTH=409	IPR005016 (Serine incorporator/TMS membrane protein)	GO:0016020 (membrane)
Niben101Scf04634g01003.1	sp|Q4WX43|IF4A_ASPFU	*-**	ATP-dependent RNA helicase eIF4A	IPR006501 (Pectinesterase inhibitor domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0004857 (enzyme inhibitor activity), GO:0005524 (ATP binding), GO:0030599 (pectinesterase activity)
Niben101Scf01281g06012.1	sp|Q5PP70|NTM1_ARATH	--**	Alpha N-terminal protein methyltransferase 1	IPR008576 (Protein of unknown function DUF858, methyltransferase-like)	GO:0008168 (methyltransferase activity)
Niben101Scf01462g01002.1	sp|Q9SZL8|FRS5_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 5	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf08030g03001.1			Unknown protein		
Niben101Scf05017g06021.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01480g01008.1	gb|ABZ03374.1|	***-	NHL3, partial [Arabidopsis thaliana]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf08613g00001.1	AT4G19185.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=398	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf04109g04001.1	sp|A1UR49|ATPB_BARBK	*-**	ATP synthase subunit beta	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR004100 (ATPase, F1 complex alpha/beta subunit, N-terminal domain), IPR020971 (ATP synthase, F1 beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000275 (mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)), GO:0005524 (ATP binding), GO:0006200 (ATP catabolic process), GO:0006754 (ATP biosynthetic process), GO:0015992 (proton transport), GO:0016887 (ATPase activity), GO:0046034 (ATP metabolic process)
Niben101Scf15192g00002.1	sp|Q6DR10|TBL43_ARATH	***-	Protein trichome birefringence-like 43	IPR026057 (PC-Esterase)	
Niben101Scf04655g03002.1	sp|O64650|RS271_ARATH	***-	40S ribosomal protein S27-1	IPR000592 (Ribosomal protein S27e), IPR023407 (Ribosomal protein S27e, zinc-binding domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf33113g00003.1	sp|Q8L748|NU107_ARATH	*-*-	Nuclear pore complex protein NUP107		
Niben101Scf02151g04013.1	ref|XP_007045807.1|	*-*-	Histone-lysine N-methyltransferase ATX1, putative isoform 1 [Theobroma cacao] gb|EOY01639.1| Histone-lysine N-methyltransferase ATX1, putative isoform 1 [Theobroma cacao]	IPR003888 (FY-rich, N-terminal), IPR003889 (FY-rich, C-terminal), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Ctg11734g00001.1	sp|Q7NBW0|DNAJ_MYCGA	--*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf02543g01008.1	sp|Q08507|ACCO3_PETHY	***-	1-aminocyclopropane-1-carboxylate oxidase 3	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf10595g01014.1	sp|Q93ZQ5|SPXM3_ARATH	****	SPX domain-containing membrane protein	IPR004331 (SPX, N-terminal), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02469g01013.1	AT3G54660.1	*-*-	glutathione reductase LENGTH=565		
Niben101Scf04634g00008.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01498g11008.1	AT1G22620.1	***-	Phosphoinositide phosphatase family protein LENGTH=912	IPR002013 (SAC domain), IPR030213 (Phosphoinositide phosphatase SAC)	GO:0007033 (vacuole organization), GO:0036092 (phosphatidylinositol-3-phosphate biosynthetic process), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf25578g00006.1	sp|Q9C554|EXPA1_ARATH	***-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf04663g01005.1	sp|O34392|YTRE_BACSU	*-**	ABC transporter ATP-binding protein YtrE	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf06956g01006.1	sp|Q9SS81|PP221_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf10248g00008.1	AT1G09320.1	*-*-	agenet domain-containing protein LENGTH=517	IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf00355g03001.1	AT4G14090.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=456	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03595g17002.1	sp|B8H444|FTSH_CAUCN	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00650g02002.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]	IPR002182 (NB-ARC), IPR021929 (Late blight resistance protein R1)	GO:0043531 (ADP binding)
Niben101Scf09599g00014.1	sp|O58321|PCP_PYRHO	****	Pyrrolidone-carboxylate peptidase	IPR016125 (Peptidase C15, pyroglutamyl peptidase I-like)	GO:0005829 (cytosol), GO:0006508 (proteolysis), GO:0016920 (pyroglutamyl-peptidase activity)
Niben101Scf01731g02005.1	gb|KEH22373.1|	*-*-	DUF4283 domain protein [Medicago truncatula]		
Niben101Scf03221g01019.1	AT3G17660.1	***-	ARF-GAP domain 15 LENGTH=232		
Niben101Scf03634g01018.1	AT5G17790.1	*-*-	zinc finger (Ran-binding) family protein LENGTH=758		
Niben101Scf04312g02005.1	sp|P48980|BGAL_SOLLC	***-	Beta-galactosidase	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf06087g11009.1	sp|Q2KI09|TCEA3_BOVIN	--**	Transcription elongation factor A protein 3	IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf02145g00002.1	ref|WP_019540988.1|	****	diphosphate--fructose-6-phosphate 1-phosphotransferase [Proteiniphilum acetatigenes]	IPR000023 (Phosphofructokinase domain), IPR011183 (Pyrophosphate-dependent phosphofructokinase PfpB), IPR022953 (Phosphofructokinase)	GO:0003872 (6-phosphofructokinase activity), GO:0005524 (ATP binding), GO:0006002 (fructose 6-phosphate metabolic process), GO:0006096 (glycolytic process), GO:0047334 (diphosphate-fructose-6-phosphate 1-phosphotransferase activity)
Niben101Scf00350g05006.1	AT1G03920.1	****	Protein kinase family protein LENGTH=569	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00841g02020.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf04528g05004.1	sp|P66066|RL13_MYCBO	***-	50S ribosomal protein L13	IPR005822 (Ribosomal protein L13), IPR023563 (Ribosomal protein L13, conserved site), IPR023564 (Ribosomal protein L13 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00859g00006.1	ref|NP_001058682.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf12653g01004.1	sp|Q54GB2|CTSL2_DICDI	*-**	CTD small phosphatase-like protein 2	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding), GO:0016791 (phosphatase activity)
Niben101Scf05385g01016.1	sp|A1RX33|PUS10_THEPD	*-**	tRNA pseudouridine synthase Pus10	IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf07463g01012.1	sp|Q70CQ2|UBP34_HUMAN	*-**	Ubiquitin carboxyl-terminal hydrolase 34	IPR008974 (TRAF-like), IPR018126 (Small acid-soluble spore protein, alpha/beta-type, conserved site), IPR024729 (ICP0-binding domain of Ubiquitin-specific protease 7), IPR028889 (Ubiquitin specific protease domain), IPR029346 (Ubiquitin carboxyl-terminal hydrolase, C-terminal)	GO:0003690 (double-stranded DNA binding), GO:0005515 (protein binding), GO:0006265 (DNA topological change), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf02792g03001.1			Unknown protein		
Niben101Scf00283g04009.1	gb|AAS07116.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01267g02002.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related), IPR023827 (Peptidase S8, subtilisin,  Asp-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00714g08010.1	sp|P36132|KAE1_YEAST	***-	tRNA N6-adenosine threonylcarbamoyltransferase	IPR000905 (Gcp-like domain), IPR017861 (Kae1/YgjD family)	
Niben101Scf09000g00009.1	sp|Q9LEC8|DHEB_NICPL	***-	Glutamate dehydrogenase B	IPR006095 (Glutamate/phenylalanine/leucine/valine dehydrogenase), IPR016040 (NAD(P)-binding domain)	GO:0006520 (cellular amino acid metabolic process), GO:0016491 (oxidoreductase activity), GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00635g03001.1			Unknown protein		
Niben101Scf02426g02027.1	sp|O49561|G2OX8_ARATH	***-	Gibberellin 2-beta-dioxygenase 8	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf10840g01014.1	ref|XP_007040371.1|	***-	Late embryogenesis abundant hydroxyproline-rich glycofamily protein, putative [Theobroma cacao] gb|EOY24872.1| Late embryogenesis abundant hydroxyproline-rich glycofamily protein, putative [Theobroma cacao]		
Niben101Scf01049g05010.1	sp|P54677|PI4K_DICDI	*-**	Phosphatidylinositol 4-kinase	IPR015433 (Phosphatidylinositol Kinase)	GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor), GO:0046854 (phosphatidylinositol phosphorylation), GO:0048015 (phosphatidylinositol-mediated signaling)
Niben101Scf25108g00002.1	AT3G56870.1	*-*-	unknown protein; Has 204 Blast hits to 201 proteins in 58 species: Archae - 0; Bacteria - 10; Metazoa - 72; Fungi - 8; Plants - 41; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). LENGTH=700		
Niben101Scf02816g07016.1	gb|AIU51078.1|	***-	AT4G29520-like protein, partial [Solanum tuberosum]	IPR021852 (Domain of unknown function DUF3456)	
Niben101Scf03202g00004.1	sp|P09443|LE19_GOSHI	***-	Late embryogenesis abundant protein D-19	IPR000389 (Stress induced protein)	
Niben101Scf16022g01005.1			Unknown protein		
Niben101Scf01319g04017.1	sp|Q6DJ78|BRE_XENTR	***-	BRCA1-A complex subunit BRE	IPR010358 (Brain/reproductive organ-expressed protein)	
Niben101Scf03736g00008.1	AT4G30840.1	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=361	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01083g00008.1	sp|O81829|GH35_ARATH	***-	Indole-3-acetic acid-amido synthetase GH3.5	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf07527g03001.1	ref|XP_003599542.1|	*-**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf10735g00006.1	ref|WP_006564711.1|	--*-	CarR protein [Helicobacter suis] gb|EFX41638.1| carotenogenesis protein [Helicobacter suis HS5] gb|EFX42760.1| CarR protein [Helicobacter suis HS1]		
Niben101Scf00490g01007.1	gb|ACF59709.1|	***-	anthocyanidin synthase [Ipomoea trifida]	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf04627g05005.1	emb|CDY44034.1|	***-	BnaA08g15720D [Brassica napus]		
Niben101Scf34602g00008.1	sp|Q6IP09|PABPB_XENLA	*-**	Polyadenylate-binding protein 1-B	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf09014g01002.1	sp|Q9XGM2|MRE11_ARATH	*-**	Double-strand break repair protein MRE11	IPR003701 (DNA repair protein Mre11), IPR029052 (Metallo-dependent phosphatase-like)	GO:0004519 (endonuclease activity), GO:0004527 (exonuclease activity), GO:0005634 (nucleus), GO:0006259 (DNA metabolic process), GO:0006302 (double-strand break repair), GO:0016787 (hydrolase activity), GO:0030145 (manganese ion binding)
Niben101Scf00313g07005.1	sp|Q8GT20|BEBT_TOBAC	***-	Benzyl alcohol O-benzoyltransferase	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf10490g00007.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00088g01008.1	sp|Q84JP1|NFYA7_ARATH	****	Nuclear transcription factor Y subunit A-7	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0016602 (CCAAT-binding factor complex)
Niben101Scf02227g05009.1	sp|Q9LZ06|GSTL3_ARATH	***-	Glutathione S-transferase L3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Ctg11069g00003.1	sp|Q9VX91|UBR1_DROME	--*-	E3 ubiquitin-protein ligase UBR1		
Niben101Scf02854g09010.1	sp|Q6NQ72|THO4D_ARATH	*-*-	THO complex subunit 4D	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf05654g00025.1	sp|P05310|PSAA_PEA	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf03886g01002.1	sp|C6T4A0|CASP6_SOYBN	***-	CASP-like protein 6	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf00630g02004.1	AT1G22180.2	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=314	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf01669g01001.1	ref|WP_013769976.1|	--*-	Pectate lyase [Cellulomonas fimi] ref|YP_004452334.1| Pectate lyase [Cellulomonas fimi ATCC 484] gb|AEE44947.1| Pectate lyase [Cellulomonas fimi ATCC 484]		
Niben101Scf14845g00002.1	sp|Q9SS81|PP221_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05050g00012.1	sp|Q69ZQ2|ISY1_MOUSE	***-	Pre-mRNA-splicing factor ISY1 homolog	IPR009360 (Isy1-like splicing)	
Niben101Scf14943g00011.1	sp|Q9ZR25|5GT_VERHY	***-	Anthocyanidin 3-O-glucoside 5-O-glucosyltransferase		
Niben101Scf16622g01018.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf27001g00011.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02911g05007.1	sp|Q9SFC6|GDIR_ARATH	****	Rho GDP-dissociation inhibitor 1	IPR000406 (RHO protein GDP dissociation inhibitor), IPR014756 (Immunoglobulin E-set)	GO:0005094 (Rho GDP-dissociation inhibitor activity), GO:0005737 (cytoplasm)
Niben101Scf07895g02005.1	sp|Q8L8Q3|LBD25_ARATH	***-	LOB domain-containing protein 25	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf01697g10007.1	sp|Q9NW13|RBM28_HUMAN	--**	RNA-binding protein 28	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf11362g01012.1	sp|Q58DW6|RAB25_BOVIN	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf04207g00005.1	AT5G02880.1	****	ubiquitin-protein ligase 4 LENGTH=1502	IPR000569 (HECT), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding)
Niben101Scf02430g01015.1	sp|P23901|ALDR_HORVU	****	Aldose reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf22905g00005.1	emb|CDY50596.1|	*-*-	BnaC02g16930D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283), IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf00390g04005.1	emb|CDY67610.1|	*-*-	BnaCnng55650D [Brassica napus]		
Niben101Scf00046g05001.1	sp|O74362|ESF2_SCHPO	*-*-	Pre-rRNA-processing protein esf2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf00509g00005.1	sp|P0CC49|NU2C2_COFAR	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic		
Niben101Scf00415g03018.1			Unknown protein		
Niben101Scf03577g00009.1	sp|Q9LSE7|B561C_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR006593 (Cytochrome b561/ferric reductase transmembrane)	
Niben101Scf32850g00013.1	sp|O94903|PROSC_HUMAN	***-	Proline synthase co-transcribed bacterial homolog protein	IPR011078 (Uncharacterised protein family UPF0001), IPR029066 (PLP-binding barrel)	
Niben101Scf07070g02027.1	AT3G28050.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=367	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf08621g00004.1	AT1G31175.1	***-	unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=118		
Niben101Ctg16318g00001.1	AT1G10280.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=412	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf08198g00024.1	sp|G5ED84|KLHL8_CAEEL	--*-	Kelch-like protein 8	IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf02344g01011.1	sp|P73016|FABI_SYNY3	***-	Enoyl-[acyl-carrier-protein] reductase [NADH] FabI	IPR002347 (Glucose/ribitol dehydrogenase)	
Niben101Scf04191g04003.1	ref|XP_007044418.1|	*-*-	Encodes protein with Uncharacterized protein function wh function whose expression is repressed by inoculation with Agrobacterium tumerifaciens isoform 1 [Theobroma cacao]		
Niben101Scf08504g04018.1			Unknown protein		
Niben101Scf06710g00006.1	sp|Q8GYX0|MOB1_ARATH	***-	MOB kinase activator-like 1	IPR005301 (Mob1/phocein)	
Niben101Scf00460g03012.1			Unknown protein		
Niben101Scf01409g07001.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04451g00012.1			Unknown protein		
Niben101Scf02798g06011.1	ref|NP_001046594.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf02821g14008.1	sp|Q754I2|GWT1_ASHGO	*-**	GPI-anchored wall transfer protein 1	IPR009447 (GWT1)	GO:0005789 (endoplasmic reticulum membrane), GO:0006506 (GPI anchor biosynthetic process), GO:0016021 (integral component of membrane), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf07035g04003.1	gb|AGO90028.1|	*-*-	maturase, partial (mitochondrion) [Carludovica palmata]		
Niben101Scf00662g01003.1	sp|Q9MTM3|RPOC2_OENEH	*-**	DNA-directed RNA polymerase subunit beta''	IPR007081 (RNA polymerase Rpb1, domain 5)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf01497g03008.1	sp|P45739|CATA_HELAN	****	Catalase	IPR002226 (Catalase haem-binding site), IPR010582 (Catalase immune-responsive domain), IPR011614 (Catalase core domain), IPR018028 (Catalase, mono-functional, haem-containing), IPR020835 (Catalase-like domain), IPR024708 (Catalase active site)	GO:0004096 (catalase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10157g01009.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04174g05001.1	sp|A1AHE2|LLDD_ECOK1	***-	L-lactate dehydrogenase	IPR012133 (Alpha-hydroxy acid dehydrogenase, FMN-dependent), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03504g03002.1	gb|AGS12722.1|	*-*-	Ycf1, partial (chloroplast) [Bergia texana]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf03905g01007.1	AT5G42500.1	*-*-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=185	IPR004265 (Plant disease resistance response protein)	
Niben101Scf08665g00007.1	sp|Q8GY42|NAC25_ARATH	--**	NAC transcription factor 25	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf34290g00001.1	emb|CDX98024.1|	-**-	BnaA06g07750D [Brassica napus]		
Niben101Scf07073g02007.1	AT5G26780.3	****	serine hydroxymethyltransferase 2 LENGTH=533	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf07650g03022.1	gb|ACG43350.1|	***-	SLT1 protein [Zea mays]		
Niben101Scf03392g03004.1	sp|Q9C9H9|PP114_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00944g03001.1	sp|O82268|LSH3_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3	IPR006936 (ALOG domain)	
Niben101Scf16733g01020.1	AT5G17390.1	***-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=285	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf01374g01015.1	sp|Q9LSP0|PER29_ARATH	****	Peroxidase 29	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00473g00010.1	sp|Q91WE2|F192A_MOUSE	--*-	Protein FAM192A	IPR019331 (NEFA-interacting nuclear protein NIP30, N-terminal)	
Niben101Scf01134g00019.1	sp|Q8GWR1|AAAS_ARATH	*-*-	Aladin		
Niben101Scf10574g00002.1	emb|CDY45449.1|	*-*-	BnaA05g12520D [Brassica napus]	IPR021916 (Protein of unknown function DUF3527)	
Niben101Scf03142g01009.1	gb|KEH22373.1|	--*-	DUF4283 domain protein [Medicago truncatula]		
Niben101Scf02124g01013.1	sp|P17879|HS71B_MOUSE	*-*-	Heat shock 70 kDa protein 1B	IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf00175g02011.1	AT3G21760.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=485	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01537g03010.1	AT1G14430.1	***-	glyoxal oxidase-related protein LENGTH=564	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR014756 (Immunoglobulin E-set), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf07182g05010.1	sp|B9FXV5|IF4G_ORYSJ	--*-	Eukaryotic translation initiation factor 4G	IPR016021 (MIF4-like, type 1/2/3)	
Niben101Scf03923g01012.1	sp|A4L9P5|HIPK1_RAT	--**	Homeodomain-interacting protein kinase 1	IPR011009 (Protein kinase-like domain), IPR015655 (Protein phosphatase 2C)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04015g02039.1	AT3G63480.1	****	ATP binding microtubule motor family protein LENGTH=469	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf05012g01005.1	AT5G19010.1	*-**	mitogen-activated protein kinase 16 LENGTH=567	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03460g05002.1	sp|Q6LNJ0|FTHS_PHOPR	****	Formate--tetrahydrofolate ligase	IPR000559 (Formate-tetrahydrofolate ligase, FTHFS), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004329 (formate-tetrahydrofolate ligase activity), GO:0005524 (ATP binding), GO:0009396 (folic acid-containing compound biosynthetic process)
Niben101Scf11756g02006.1	AT2G27820.1	****	prephenate dehydratase 1 LENGTH=424	IPR001086 (Prephenate dehydratase), IPR002912 (ACT domain)	GO:0004664 (prephenate dehydratase activity), GO:0008152 (metabolic process), GO:0009094 (L-phenylalanine biosynthetic process), GO:0016597 (amino acid binding)
Niben101Scf02909g10007.1	sp|Q9LQL2|PTR14_ARATH	***-	Protein NRT1/ PTR FAMILY 7.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01064g03009.1	AT4G35540.1	*-**	zinc ion binding;transcription regulators LENGTH=527	IPR000812 (Transcription factor TFIIB)	GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf00713g05010.1			Unknown protein		
Niben101Scf01329g01004.1	sp|B6IDH3|RUS5_ARATH	*-*-	Protein root UVB sensitive 5	IPR006968 (Root UVB sensitive family)	
Niben101Scf00650g01009.1	sp|A5CVR5|HIS8_VESOH	*-**	Histidinol-phosphate aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016846 (carbon-sulfur lyase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02953g01006.1	AT4G04340.2	***-	ERD (early-responsive to dehydration stress) family protein LENGTH=772	IPR003864 (Domain of unknown function DUF221)	GO:0016020 (membrane)
Niben101Scf05302g04012.1	sp|Q8L7S4|MP702_ARATH	****	Microtubule-associated protein 70-2	IPR009768 (Microtubule-associated protein 70)	GO:0007010 (cytoskeleton organization), GO:0008017 (microtubule binding)
Niben101Scf05177g01033.1	sp|P57250|RIBF_BUCAI	*-**	Riboflavin biosynthesis protein RibF	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0003919 (FMN adenylyltransferase activity), GO:0009231 (riboflavin biosynthetic process)
Niben101Scf07640g01014.1	sp|Q9FGV1|ARFH_ARATH	****	Auxin response factor 8	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf10947g01022.1	gb|KEH20407.1|	****	salicylic acid carboxyl methyltransferase [Medicago truncatula]	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf01646g00008.1	sp|Q5TZ07|PPAC2_DANRE	*-*-	Presqualene diphosphate phosphatase	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Scf02807g06003.1	sp|Q6L8G0|ZIP5_ORYSJ	****	Zinc transporter 5	IPR003689 (Zinc/iron permease)	GO:0005385 (zinc ion transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport), GO:0071577 (zinc ion transmembrane transport)
Niben101Scf00123g00006.1	sp|Q84MB3|ACCH1_ARATH	--*-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03321g01001.1	AT1G17160.1	*-*-	pfkB-like carbohydrate kinase family protein LENGTH=379	IPR029056 (Ribokinase-like)	
Niben101Scf03348g00012.1	ref|XP_007011369.1|	***-	Rhodanese/Cell cycle control ph isoform 1 [Theobroma cacao]	IPR020936 (Uncharacterised protein family UPF0176)	
Niben101Scf01116g01011.1	AT1G72180.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=977	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Scf01308g02002.1	AT1G28960.1	****	nudix hydrolase homolog 15 LENGTH=293	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf10595g00009.1	gb|KEH18996.1|	***-	TCP family transcription factor [Medicago truncatula]		
Niben101Scf02531g01003.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01837g03007.1	AT2G01290.1	****	ribose-5-phosphate isomerase 2 LENGTH=265	IPR004788 (Ribose 5-phosphate isomerase, type A)	GO:0004751 (ribose-5-phosphate isomerase activity), GO:0009052 (pentose-phosphate shunt, non-oxidative branch)
Niben101Scf02853g06018.1	ref|WP_010938581.1|	--*-	response regulator [Desulfovibrio vulgaris] ref|YP_010504.1| response regulator [Desulfovibrio vulgaris str. Hildenborough] gb|AAS95763.1| response regulator [Desulfovibrio vulgaris str. Hildenborough]		
Niben101Scf07395g00030.1	sp|Q3E8X3|PTR52_ARATH	***-	Protein NRT1/ PTR FAMILY 2.8	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf07611g01002.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06164g01002.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00207g02011.1	ref|XP_002533906.1|	--*-	DNA double-strand break repair rad50 ATPase, putative [Ricinus communis] gb|EEF28480.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus communis]		
Niben101Scf04436g15042.1	sp|Q9LHE5|TO401_ARATH	****	Mitochondrial import receptor subunit TOM40-1	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0055085 (transmembrane transport)
Niben101Scf03104g03019.1	sp|Q9ZS88|DER22_ARATH	***-	Derlin-2.2	IPR007599 (Derlin)	
Niben101Scf04053g03025.1	sp|Q5RA93|CWC22_PONAB	*-*-	Pre-mRNA-splicing factor CWC22 homolog		
Niben101Scf01882g00002.1	sp|A1E9Z8|RPOB_AGRST	*-**	DNA-directed RNA polymerase subunit beta	IPR007642 (RNA polymerase Rpb2, domain 2), IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf01328g01021.1	gb|KEH37408.1|	*-*-	ankyrin repeat plant-like protein [Medicago truncatula]	IPR020683 (Ankyrin repeat-containing domain)	
Niben101Scf03794g01029.1			Unknown protein		
Niben101Scf04158g03003.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04060g01014.1	ref|XP_002515460.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF46909.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07182g00015.1	AT3G13670.1	****	Protein kinase family protein LENGTH=703	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05229g04009.1	AT1G69710.1	***-	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain LENGTH=1041	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf02375g10008.1			Unknown protein		
Niben101Scf02428g01005.1	sp|Q9CAM8|PP100_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf01964g11009.1	sp|Q84LH3|WEX_ARATH	****	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf14639g00006.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf06382g03006.1			Unknown protein		
Niben101Scf03431g00007.1	ref|YP_005090400.1|	*-*-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf15067g00002.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06968g00021.1	sp|Q9BTT6|LRRC1_HUMAN	--*-	Leucine-rich repeat-containing protein 1	IPR025875 (Leucine rich repeat 4)	
Niben101Scf05731g00018.1	sp|Q8RXT9|GDL8_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02869g10005.1			Unknown protein		
Niben101Scf01837g01001.1	gb|AAP53215.2|	*-*-	retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]		
Niben101Scf00370g03034.1	sp|Q9SCU0|SDR2A_ARATH	*-**	Short-chain dehydrogenase reductase 2a	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf06750g02008.1	sp|Q9FM19|HIR1_ARATH	***-	Hypersensitive-induced response protein 1	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf03607g00009.1	AT4G20130.1	***-	plastid transcriptionally active 14 LENGTH=483	IPR001214 (SET domain), IPR015353 (Rubisco LSMT, substrate-binding domain)	GO:0005515 (protein binding)
Niben101Scf10934g01006.1	sp|Q9MVV8|MATK_TAXBA	--*-	Maturase K		
Niben101Scf01582g05016.1	AT1G65430.1	*-*-	IBR domain-containing protein LENGTH=567		
Niben101Scf05749g02024.1	AT1G49870.1	***-	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 6518 Blast hits to 5022 proteins in 522 species: Archae - 49; Bacteria - 635; Metazoa - 3264; Fungi - 379; Plants - 242; Viruses - 9; Other Eukaryotes - 1940 (source: NCBI BLink). LENGTH=828		
Niben101Scf11124g01025.1	AT3G25120.1	***-	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein LENGTH=189	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Scf02289g05019.1	AT3G29770.1	***-	methyl esterase 11 LENGTH=390	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05439g02058.1	gb|AGY62799.1|	***-	orf148 (mitochondrion) [Eruca vesicaria subsp. sativa] gb|AHY20342.1| hypothetical protein (mitochondrion) (mitochondrion) [Brassica juncea var. tumida] gb|AIC83308.1| orf148 (mitochondrion) [Brassica oleracea var. botrytis]		
Niben101Scf00067g02010.1	sp|Q8S3D2|BH087_ARATH	***-	Transcription factor bHLH87	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03794g01025.1	sp|Q91790|DUS1A_XENLA	*-**	Dual specificity protein phosphatase 1-A	IPR007122 (Villin/Gelsolin), IPR024950 (Dual specificity phosphatase), IPR029006 (ADF-H/Gelsolin-like domain), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0003779 (actin binding), GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf02919g00019.1	AT1G48480.1	****	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03990g00010.1	sp|Q42580|PER21_ARATH	****	Peroxidase 21	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11261g02005.1	sp|Q6INH1|RN157_XENLA	*-*-	RING finger protein 157	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04933g00011.1	AT2G31010.1	*-**	Protein kinase superfamily protein LENGTH=775	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09467g00004.1	sp|Q5SPL2|PHF12_MOUSE	--*-	PHD finger protein 12	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04216g04002.1	AT3G21480.1	*-*-	BRCT domain-containing DNA repair protein LENGTH=1041	IPR001357 (BRCT domain)	
Niben101Scf05605g00050.1	ATMG00090.1	****	structural constituent of ribosome;protein binding chrM:25482-28733 REVERSE LENGTH=556	IPR001351 (Ribosomal protein S3, C-terminal), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00128g03019.1	AT3G02130.1	*-*-	receptor-like protein kinase 2 LENGTH=1151		
Niben101Scf01374g06005.1	sp|Q3B5F5|CH60_PELLD	***-	60 kDa chaperonin	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding), GO:0042026 (protein refolding), GO:0044267 (cellular protein metabolic process)
Niben101Scf00126g04005.1			Unknown protein		
Niben101Scf07797g00006.1			Unknown protein		
Niben101Scf01388g01001.1	sp|Q9SSL9|PEPR1_ARATH	*-*-	Leucine-rich repeat receptor-like protein kinase PEPR1		
Niben101Scf05610g03013.1	sp|Q9FEX0|OPRL_SOLLC	*-**	12-oxophytodienoate reductase-like protein	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00023g02002.1	ref|NP_001055171.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf02351g00001.1	gb|KEH37794.1|	***-	F-box/RNI/FBD-like domain protein [Medicago truncatula]		
Niben101Scf04748g02014.1	ref|XP_002515369.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF46818.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf05848g05012.1	sp|O48965|IDI2_CAMAC	****	Isopentenyl-diphosphate Delta-isomerase II	IPR011876 (Isopentenyl-diphosphate delta-isomerase, type 1), IPR015797 (NUDIX hydrolase domain-like)	GO:0004452 (isopentenyl-diphosphate delta-isomerase activity), GO:0008299 (isoprenoid biosynthetic process), GO:0016787 (hydrolase activity)
Niben101Scf03023g00005.1			Unknown protein		
Niben101Scf05961g02039.1	sp|Q9SE97|FH1_ARATH	*-*-	Formin-like protein 1	IPR015425 (Formin, FH2 domain)	
Niben101Scf04040g01002.1	sp|Q9H9V4|RN122_HUMAN	--*-	RING finger protein 122	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03023g02008.1	sp|Q13442|HAP28_HUMAN	*-*-	28 kDa heat- and acid-stable phosphoprotein	IPR019380 (Casein kinase substrate, phosphoprotein PP28)	
Niben101Scf04712g00012.1	sp|Q8VWK4|TRB1_ARATH	****	Telomere repeat-binding factor 1	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf01283g01020.1	sp|P48601|PRS4_DROME	***-	26S protease regulatory subunit 4	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf15953g01012.1	emb|CDY04634.1|	*-*-	BnaC05g16720D [Brassica napus]		
Niben101Scf07668g00032.1	sp|Q5ZJI9|UBAC1_CHICK	--*-	Ubiquitin-associated domain-containing protein 1	IPR006567 (PUG domain), IPR009060 (UBA-like), IPR018997 (PUB domain)	GO:0005515 (protein binding)
Niben101Scf01230g04009.1	AT1G23300.1	*-*-	MATE efflux family protein LENGTH=515	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf04436g15046.1	sp|Q3EDF8|PPR28_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf09960g01010.1			Unknown protein		
Niben101Scf00058g00002.1	sp|B2IAI0|BIOC_XYLF2	*-**	Malonyl-[acyl-carrier protein] O-methyltransferase	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf09696g01113.1			Unknown protein		
Niben101Scf01259g03002.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2		
Niben101Scf08566g06008.1	AT2G37030.1	***-	SAUR-like auxin-responsive protein family LENGTH=124	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf05147g00004.1	sp|A5N4N1|EFTU_CLOK5	***-	Elongation factor Tu	IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf07926g05017.1	AT2G25220.2	*-*-	Protein kinase superfamily protein LENGTH=437		
Niben101Scf04223g01003.1	sp|P83332|TLP1_PRUPE	***-	Thaumatin-like protein 1	IPR001938 (Thaumatin)	
Niben101Scf09248g06007.1	sp|Q9SCT6|Y3172_ARATH	*-*-	WEB family protein	IPR008545 (WEB family), IPR019007 (WW domain binding protein 11)	GO:0006396 (RNA processing)
Niben101Scf00090g05006.1			Unknown protein		
Niben101Scf04462g00008.1	sp|Q9LKJ1|HIBC1_ARATH	***-	3-hydroxyisobutyryl-CoA hydrolase 1	IPR001753 (Crotonase superfamily), IPR008974 (TRAF-like), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0005515 (protein binding), GO:0008152 (metabolic process)
Niben101Scf01980g07017.1	ref|NP_001052354.1|	***-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf13231g02006.1	sp|A5UL75|RL5_METS3	***-	50S ribosomal protein L5	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02430g01013.1	ref|WP_006422124.1|	--*-	2Fe-2S iron-sulfur cluster binding domain protein [delta proteobacterium NaphS2] gb|EFK09230.1| 2Fe-2S iron-sulfur cluster binding domain protein [delta proteobacterium NaphS2]		
Niben101Scf00777g03006.1	sp|Q70Z53|F10C1_HUMAN	*-*-	Protein FRA10AC1	IPR019129 (Folate-sensitive fragile site protein Fra10Ac1)	
Niben101Scf02051g03004.1	sp|Q4R888|HS71L_MACFA	***-	Heat shock 70 kDa protein 1-like	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf00152g02002.1	emb|CDY15672.1|	--*-	BnaA07g08430D [Brassica napus] emb|CDX94612.1| BnaC07g10460D [Brassica napus]		
Niben101Scf22702g00008.1	AT1G32580.1	***-	plastid developmental protein DAG, putative LENGTH=229		
Niben101Scf01671g06022.1	sp|Q9ZU50|BAT1_ARATH	--*-	Amino-acid permease BAT1		
Niben101Scf18898g00024.1	sp|Q9SRQ5|Y3351_ARATH	--*-	BTB/POZ domain-containing protein		
Niben101Scf09123g01016.1	AT2G38050.1	****	3-oxo-5-alpha-steroid 4-dehydrogenase family protein LENGTH=262	IPR016636 (3-oxo-5-alpha-steroid 4-dehydrogenase)	GO:0003865 (3-oxo-5-alpha-steroid 4-dehydrogenase activity), GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0008202 (steroid metabolic process), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00028g04010.1	gb|ABF98856.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf00055g00003.1	AT4G16580.1	***-	Protein phosphatase 2C family protein LENGTH=467	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf05123g02015.1	gb|KEH43918.1|	*-**	RING zinc finger protein, putative [Medicago truncatula]	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02929g03001.1	ref|YP_001152267.1|	--*-	ORF65d [Pinus koraiensis] gb|ABP35508.1| ORF65d [Pinus koraiensis]		
Niben101Scf02844g12013.1	sp|Q8CGC6|RBM28_MOUSE	--**	RNA-binding protein 28	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00415g03019.1	AT4G14410.1	***-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=283	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf07648g01024.1	AT4G36590.1	***-	MADS-box transcription factor family protein LENGTH=248	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01142g00014.1	sp|Q9S793|FRS8_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 8	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf00904g03001.1			Unknown protein		
Niben101Scf08776g00003.1	sp|Q9LW49|ERF4_NICSY	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03435g02018.1	ref|WP_026721373.1|	--*-	molecular chaperone DnaJ [Fischerella sp. PCC 9431]	IPR021788 (Protein of unknown function DUF3353)	
Niben101Scf08127g08025.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02237g04007.1	AT3G48050.1	***-	BAH domain ;TFIIS helical bundle-like domain LENGTH=1613	IPR001025 (Bromo adjacent homology (BAH) domain), IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf15418g00003.1	AT1G71850.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=470	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf02249g01014.1	sp|A8ALC3|GLND_CITK8	--*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme		
Niben101Scf03213g03016.1	AT1G24430.1	****	HXXXD-type acyl-transferase family protein LENGTH=435	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03438g06004.1	AT3G57530.1	****	calcium-dependent protein kinase 32 LENGTH=538	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04040g04007.1	sp|P58525|MTOX_SALTY	***-	N-methyl-L-tryptophan oxidase	IPR006076 (FAD dependent oxidoreductase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf15054g02002.1			Unknown protein		
Niben101Scf01314g02004.1	AT5G25400.1	***-	Nucleotide-sugar transporter family protein LENGTH=349	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf12414g01008.1	emb|CDY69766.1|	***-	BnaCnng65240D [Brassica napus]	IPR009902 (Protein of unknown function DUF1442), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf02597g06013.1	sp|Q6H711|MAD29_ORYSJ	*-**	MADS-box transcription factor 29	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08078g02006.1	sp|Q9FXI5|IQD32_ARATH	--*-	Protein IQ-DOMAIN 32	IPR025064 (Domain of unknown function DUF4005)	
Niben101Scf01695g00002.1	sp|C6T1G0|CASP7_SOYBN	-**-	CASP-like protein 7	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf10388g01005.1	AT3G09430.1	*-*-	unknown protein; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=301		
Niben101Scf00249g00013.1	gb|KEH18714.1|	--*-	rRNA processing/ribosome biogenesis protein [Medicago truncatula]		
Niben101Scf00091g00017.1	AT2G21710.1	****	Mitochondrial transcription termination factor family protein LENGTH=641	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06467g05002.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf05387g12001.1			Unknown protein		
Niben101Scf04082g00001.1	sp|Q9LUJ2|PP249_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02105g01015.1	AT4G15050.1	*-*-	Protein of Unknown Function (DUF239) LENGTH=396	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf01420g00001.1	gb|ACG44885.1|	****	universal stress protein family protein [Zea mays]	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf05378g03015.1	ref|XP_002525877.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF36481.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01556g01007.1	sp|P19595|UGPA_SOLTU	****	UTP--glucose-1-phosphate uridylyltransferase	IPR002618 (UTP--glucose-1-phosphate uridylyltransferase family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0003983 (UTP:glucose-1-phosphate uridylyltransferase activity), GO:0006011 (UDP-glucose metabolic process), GO:0008152 (metabolic process), GO:0070569 (uridylyltransferase activity)
Niben101Scf00396g01003.1	ref|XP_007044963.1|	--**	HXXXD-type acyl-transferase family protein, putative [Theobroma cacao] gb|EOY00795.1| HXXXD-type acyl-transferase family protein, putative [Theobroma cacao]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf10575g00008.1	AT4G34350.1	****	4-hydroxy-3-methylbut-2-enyl diphosphate reductase LENGTH=466	IPR003451 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase)	GO:0019288 (isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway), GO:0046872 (metal ion binding), GO:0050992 (dimethylallyl diphosphate biosynthetic process), GO:0051745 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity)
Niben101Scf01991g01021.1	sp|Q46909|YGCS_ECOLI	*-**	Inner membrane metabolite transport protein YgcS	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02160g06016.1	AT2G07820.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=88		
Niben101Scf02057g01001.1	sp|Q8S944|DRP3A_ARATH	*-*-	Dynamin-related protein 3A	IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf01119g05017.1	sp|Q9M907|PP217_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf13741g02011.1	sp|Q9C6Y3|CCA11_ARATH	****	Cyclin-A1-1	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf02736g06011.1	gb|AGK82834.1|	*-**	cis-prenyl transferase 9 [Solanum habrochaites]	IPR001441 (Decaprenyl diphosphate synthase-like)	GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf05609g02004.1	AT3G19430.1	***-	late embryogenesis abundant protein-related / LEA protein-related LENGTH=559	IPR009646 (Root cap)	
Niben101Scf02030g00018.1	AT1G79915.1	***-	Putative methyltransferase family protein LENGTH=312	IPR019410 (Nicotinamide N-methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf05632g00009.1	ref|WP_013413882.1|	****	arsenic transporter ATPase [Methanothermus fervidus] ref|YP_004004366.1| arsenite efflux ATP-binding protein arsa [Methanothermus fervidus DSM 2088] gb|ADP77604.1| arsenite efflux ATP-binding protein ArsA [Methanothermus fervidus DSM 2088]	IPR016300 (Arsenical pump ATPase, ArsA/GET3), IPR025723 (Anion-transporting ATPase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf18774g02010.1			Unknown protein		
Niben101Scf00662g01001.1	sp|A9L984|ATPI_LEMMI	****	ATP synthase subunit a, chloroplastic	IPR000568 (ATPase, F0 complex, subunit A), IPR001865 (Ribosomal protein S2), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf05151g00012.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf07296g00007.1	ref|NP_001048198.1|	***-	product [Oryza sativa Japonica Group]	IPR029469 (PAN-4 domain)	
Niben101Scf02435g01015.1	AT4G33540.1	***-	metallo-beta-lactamase family protein LENGTH=355	IPR001279 (Beta-lactamase-like)	
Niben101Scf01441g02002.1	AT1G02816.1	***-	Protein of unknown function, DUF538 LENGTH=166	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf07044g03013.1	sp|Q9C9A6|PUB10_ARATH	***-	U-box domain-containing protein 10	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf02638g00003.1	gb|AES64701.2|	*-*-	magnesium transporter CorA family protein [Medicago truncatula]		
Niben101Scf16530g00017.1	sp|Q8W4H1|GAT26_ARATH	****	GATA transcription factor 26	IPR013088 (Zinc finger, NHR/GATA-type), IPR028020 (ASX homology domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf35349g00002.1	sp|Q9LK50|AB26G_ARATH	*-*-	ABC transporter G family member 26		
Niben101Scf00752g03015.1	sp|Q8LD23|GDL4_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf08728g02004.1	sp|Q6XJG8|PSD2B_ARATH	*-*-	26S proteasome non-ATPase regulatory subunit 2 homolog B		
Niben101Scf08675g00023.1	sp|A9WCD8|GATA_CHLAA	*-*-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR011990 (Tetratricopeptide-like helical domain), IPR023631 (Amidase signature domain)	GO:0005515 (protein binding), GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf03942g02007.1	sp|P49637|R27A3_ARATH	*-*-	60S ribosomal protein L27a-3		
Niben101Scf00066g00012.1	ref|NP_001078298.1|	--*-	protein ROTUNDIFOLIA like 7 [Arabidopsis thaliana] tpg|DAA02279.1| TPA_exp: DVL8 [Arabidopsis thaliana] gb|AEE79395.1| protein rotundifolia like 7 [Arabidopsis thaliana]	IPR012552 (DVL)	
Niben101Scf04654g03004.1	sp|Q9SIL5|PP165_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02071g05005.1	AT2G07739.1	*-*-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf08918g02011.1	emb|CDX72311.1|	*-*-	BnaC07g43330D [Brassica napus]		
Niben101Scf14158g00002.1	AT3G19100.1	*-**	Protein kinase superfamily protein LENGTH=599	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00214g07004.1	AT4G28240.1	***-	Wound-responsive family protein LENGTH=86	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf00254g07001.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01792g00006.1	emb|CDY28268.1|	*-*-	BnaA01g05810D [Brassica napus]		
Niben101Scf00684g01001.1	AT2G37420.1	****	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf10840g01010.1	sp|Q948U0|RBOHA_SOLTU	***-	Respiratory burst oxidase homolog protein A	IPR000778 (Cytochrome b245, heavy chain), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07437g01013.1			Unknown protein		
Niben101Scf03239g05020.1	ref|XP_007040372.1|	***-	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao] gb|EOY24873.1| Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao]	IPR004864 (Late embryogenesis abundant protein, LEA-14), IPR013783 (Immunoglobulin-like fold)	
Niben101Scf13540g04027.1	sp|Q5A4W8|BDF1_CANAL	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf01001g00001.1	sp|Q9SV09|C3H46_ARATH	***-	Zinc finger CCCH domain-containing protein 46	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01239g01009.1	sp|Q5U5C5|PRP31_XENLA	--*-	U4/U6 small nuclear ribonucleoprotein Prp31		
Niben101Scf03302g04007.1	AT5G60710.1	*-*-	Zinc finger (C3HC4-type RING finger) family protein LENGTH=704		
Niben101Scf01455g01020.1	sp|Q55E13|ZPR1_DICDI	****	Zinc finger protein ZPR1 homolog	IPR004457 (Zinc finger, ZPR1-type)	GO:0008270 (zinc ion binding)
Niben101Scf00870g02009.1	AT1G17280.1	***-	ubiquitin-conjugating enzyme 34 LENGTH=237	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf06848g02005.1	emb|CDX87909.1|	--*-	BnaC06g09710D [Brassica napus]		
Niben101Scf06996g02037.1			Unknown protein		
Niben101Scf08351g01003.1	ref|NP_181417.2|	*-*-	ubiquitin-conjugating enzyme/RWD-like protein [Arabidopsis thaliana] gb|AEC09592.1| ubiquitin-conjugating enzyme/RWD-like protein [Arabidopsis thaliana]	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf02929g02016.1			Unknown protein		
Niben101Scf03854g02014.1	AT5G65110.1	****	acyl-CoA oxidase 2 LENGTH=692	IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR012258 (Acyl-CoA oxidase)	GO:0003995 (acyl-CoA dehydrogenase activity), GO:0003997 (acyl-CoA oxidase activity), GO:0005777 (peroxisome), GO:0006631 (fatty acid metabolic process), GO:0006635 (fatty acid beta-oxidation), GO:0008152 (metabolic process), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05060g02003.1	AT5G39785.2	*-*-	Protein of unknown function (DUF1666) LENGTH=607	IPR008195 (Ribosomal protein L34Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08137g01039.1	sp|Q4VA36|CCD84_MOUSE	*-*-	Coiled-coil domain-containing protein 84	IPR028015 (Coiled-coil domain-containing protein 84)	
Niben101Scf03705g00008.1	gb|AES89478.2|	*-*-	MAP kinase kinase kinase [Medicago truncatula]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02081g00001.1	ref|XP_007051794.1|	***-	Recombination initiation defects 3, putative isoform 1 [Theobroma cacao] ref|XP_007051797.1| Recombination initiation defects 3, putative isoform 1 [Theobroma cacao] gb|EOX95951.1| Recombination initiation defects 3, putative isoform 1 [Theobroma cacao] gb|EOX95954.1| Recombination initiation defects 3, putative isoform 1 [Theobroma cacao]		
Niben101Scf00140g02016.1	sp|Q55FK2|RAB6_DICDI	*-*-	Ras-related protein Rab-6	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf02375g02004.1	emb|CDY63745.1|	***-	BnaC05g07770D [Brassica napus]	IPR010410 (Protein of unknown function DUF1005)	
Niben101Scf05880g03039.1	ref|NP_001119460.1|	*-*-	smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana] gb|AED97091.1| smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana]	IPR013899 (Domain of unknown function DUF1771)	
Niben101Scf20828g00002.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06847g02004.1	AT5G47050.1	*-**	SBP (S-ribonuclease binding protein) family protein LENGTH=300	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01623g12006.1	emb|CDY11431.1|	*-*-	BnaA09g39970D [Brassica napus]		
Niben101Scf10476g01003.1	AT1G02180.1	***-	ferredoxin-related LENGTH=226	IPR014044 (CAP domain)	
Niben101Scf15227g00026.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02752g05011.1	AT3G06400.3	****	chromatin-remodeling protein 11 LENGTH=1057	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR009057 (Homeodomain-like), IPR015194 (ISWI, HAND domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029915 (ISWI family)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006338 (chromatin remodeling), GO:0016589 (NURF complex), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides), GO:0016887 (ATPase activity), GO:0031491 (nucleosome binding), GO:0043044 (ATP-dependent chromatin remodeling)
Niben101Scf20506g00006.1	sp|Q9LQL2|PTR14_ARATH	***-	Protein NRT1/ PTR FAMILY 7.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf08007g02012.1	sp|Q8BMG7|RBGPR_MOUSE	*-**	Rab3 GTPase-activating protein non-catalytic subunit	IPR026059 (Rab3-GAP regulatory subunit)	GO:0043087 (regulation of GTPase activity)
Niben101Scf13118g00006.1	AT3G62880.1	***-	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein LENGTH=136	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Scf03619g03001.1	AT2G35615.1	***-	Eukaryotic aspartyl protease family protein LENGTH=447	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05206g00010.1	sp|Q9C7A8|PSF2_ARATH	****	DNA replication complex GINS protein PSF2	IPR021151 (GINS complex)	GO:0005634 (nucleus), GO:0006260 (DNA replication)
Niben101Ctg14614g00001.1	gb|ACF19788.1|	--*-	NAC transcription factor [Nicotiana tabacum]		
Niben101Scf05553g06001.1	sp|Q9ZPE7|EXO_ARATH	***-	Protein EXORDIUM	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf01920g00015.1	sp|P00248|FER_MASLA	***-	Ferredoxin	IPR010241 (Ferredoxin [2Fe-2S], plant), IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0022900 (electron transport chain), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf03046g07001.1	sp|O24038|NLTP2_SOLPN	****	Non-specific lipid-transfer protein 2	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf20124g00025.1	sp|Q9LR69|PPR8_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07820g00001.1	AT2G37400.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=333	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07372g00017.1	gb|AID55038.1|	*-*-	disease resistance protein, partial [Solanum habrochaites]		
Niben101Scf02459g09003.1	AT3G13784.1	*-*-	cell wall invertase 5 LENGTH=569	IPR013189 (Glycosyl hydrolase family 32, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	
Niben101Scf03240g00007.1	sp|Q9LHP4|RCH2_ARATH	*-*-	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf01683g17012.1	sp|Q9AXT8|CMT1_MAIZE	*-*-	DNA (cytosine-5)-methyltransferase 1		
Niben101Scf00800g01007.1	ref|NP_001105793.1|	*-*-	alkaline alpha galactosidase 1 [Zea mays] alkaline alpha galactosidase 1 [Zea mays]	IPR008811 (Glycosyl hydrolases 36), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf02868g01002.1	AT5G24940.1	****	Protein phosphatase 2C family protein LENGTH=447	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf03844g01002.1	AT1G10940.2	****	Protein kinase superfamily protein LENGTH=371	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01593g04006.1	AT5G53900.2	***-	Serine/threonine-protein kinase WNK (With No Lysine)-related LENGTH=377	IPR025610 (Transcription factor MYC/MYB N-terminal)	
Niben101Scf21986g00008.1	AT3G25640.1	***-	Protein of unknown function, DUF617 LENGTH=267	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf04663g04006.1	AT4G32600.1	***-	RING/U-box superfamily protein LENGTH=453		
Niben101Scf00043g03001.1	sp|Q5WJN4|CH60_BACSK	***-	60 kDa chaperonin	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process)
Niben101Scf08590g01004.1	sp|O14435|GBB_CRYPA	*-**	Guanine nucleotide-binding protein subunit beta	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf24963g00007.1	AT2G41970.1	*-*-	Protein kinase superfamily protein LENGTH=365	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00951g00005.1	AT1G06620.1	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=365	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf05618g02009.1	sp|P49726|SPE1_SOLLC	*-*-	Arginine decarboxylase	IPR029066 (PLP-binding barrel)	GO:0003824 (catalytic activity)
Niben101Scf03403g03023.1	gb|AAK21250.1|AF335237_1	*-**	MADS-box transcription factor FBP13 [Petunia x hybrida]	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03971g00004.1	AT2G03450.1	****	purple acid phosphatase 9 LENGTH=651	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf06420g00009.1	AT2G23530.1	***-	Zinc-finger domain of monoamine-oxidase A repressor R1 LENGTH=552	IPR018866 (Zinc-finger domain of monoamine-oxidase A repressor R1)	
Niben101Scf01521g07006.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf08776g01007.1	sp|Q9LYD9|EMF1_ARATH	*-*-	Protein EMBRYONIC FLOWER 1		
Niben101Scf01630g00016.1	sp|Q28D01|WDR26_XENTR	*-*-	WD repeat-containing protein 26	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR027728 (Topless family)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08065g00006.1	AT1G20925.1	***-	Auxin efflux carrier family protein LENGTH=472	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf12045g06026.1	gb|AET02503.2|	***-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf00160g09015.1	ref|XP_002522268.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF40126.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03944g03002.1	sp|Q5SPX3|RN215_MOUSE	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00934g03005.1	sp|Q9ZT66|E134_MAIZE	***-	Endo-1,3;1,4-beta-D-glucanase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf01001g02002.1	AT5G12180.1	****	calcium-dependent protein kinase 17 LENGTH=528	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08011g01006.1	sp|Q9SLK6|ALA6_ARATH	*-**	Phospholipid-transporting ATPase 6	IPR006539 (P-type ATPase, subfamily IV), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane)
Niben101Scf10126g00018.1	gb|AES87033.2|	***-	DUF674 family protein [Medicago truncatula]	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf03985g04030.1	AT5G41810.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=288		
Niben101Scf00350g05009.1	sp|Q92383|MAG1_SCHPO	****	DNA-3-methyladenine glycosylase 1	IPR011257 (DNA glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair)
Niben101Scf03712g00005.1	sp|Q6P8J2|SAT2_MOUSE	****	Diamine acetyltransferase 2	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf10161g00015.1	sp|Q9SYK1|PPR11_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf20904g00009.1	sp|O04373|ILL4_ARATH	****	IAA-amino acid hydrolase ILR1-like 4	IPR002933 (Peptidase M20)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf05078g08029.1	AT3G43720.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=193	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf05811g04001.1	ref|XP_002520077.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF42401.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02721g05006.1	emb|CDY12195.1|	***-	BnaC04g12250D [Brassica napus]	IPR010471 (Protein of unknown function DUF1068)	
Niben101Scf08836g00019.1	sp|Q84W66|NFYB6_ARATH	*-*-	Nuclear transcription factor Y subunit B-6	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf04582g02013.1	sp|Q9LZS7|GDL71_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02408g02007.1	ref|NP_001057128.1|	***-	product [Oryza sativa Japonica Group]	IPR008547 (Protein of unknown function DUF829, TMEM53), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Ctg14837g00005.1	sp|Q9ZQR4|Y2452_ARATH	*-*-	DUF21 domain-containing protein		
Niben101Scf00571g05009.1	sp|Q9XZE5|PP2AA_DICDI	***-	Serine/threonine-protein phosphatase 2A catalytic subunit A	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf06562g00006.1	AT1G17100.1	***-	SOUL heme-binding family protein LENGTH=232	IPR006917 (SOUL haem-binding protein), IPR011256 (Regulatory factor, effector binding domain)	
Niben101Scf01190g04004.1	gb|EMS68158.1|	*-*-	Glycogenin-1 [Triticum urartu]	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf39126g00007.1	emb|CBM56257.1|	*-**	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03173g00010.1	AT1G69060.1	*-*-	Chaperone DnaJ-domain superfamily protein LENGTH=630	IPR001623 (DnaJ domain)	
Niben101Scf10671g00009.1	sp|Q70Z18|NAP1B_TOBAC	*-**	Nucleosome assembly protein 1;2	IPR002164 (Nucleosome assembly protein (NAP))	GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf03276g00008.1	sp|Q5NAI4|PLA5_ORYSJ	***-	Phospholipase A1-II 5	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf06976g03021.1	sp|Q93ZE8|SDF2_ARATH	***-	Stromal cell-derived factor 2-like protein	IPR016093 (MIR motif), IPR027005 (Glycosyltransferase 39 like)	GO:0016020 (membrane)
Niben101Scf00970g02011.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00595g04023.1	ref|NP_198587.1|	***-	alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana] gb|AED94221.1| lipase class 3 family protein / putative calmodulin-binding heat-shock protein [Arabidopsis thaliana]	IPR005592 (Mono-/di-acylglycerol lipase, N-terminal), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0016042 (lipid catabolic process)
Niben101Scf07965g04002.1	sp|Q8W5S1|CCH11_ARATH	****	Cyclin-H1-1	IPR015429 (Cyclin C/H/T/L)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0016538 (cyclin-dependent protein serine/threonine kinase regulator activity), GO:0016591 (DNA-directed RNA polymerase II, holoenzyme), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle), GO:0070985 (TFIIK complex)
Niben101Scf03631g01033.1			Unknown protein		
Niben101Scf04731g10001.1	sp|Q2KI09|TCEA3_BOVIN	--**	Transcription elongation factor A protein 3	IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf08776g02018.1	sp|O07597|DAAA_BACSU	***-	D-alanine aminotransferase	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf10405g00002.1	sp|Q40702|MADS2_ORYSJ	****	MADS-box transcription factor 2	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf05483g12004.1	AT5G13020.1	***-	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein LENGTH=397	IPR005491 (EMSY N-terminal)	
Niben101Scf11493g00005.1			Unknown protein		
Niben101Scf06779g03006.1	sp|Q9M8X5|GL15_ARATH	*-*-	Germin-like protein subfamily 1 member 5	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf04511g00014.1	AT1G30280.1	***-	Chaperone DnaJ-domain superfamily protein LENGTH=455		
Niben101Scf04020g04009.1	gb|KEH32406.1|	*-*-	transducin family protein/WD-40 repeat protein [Medicago truncatula]		
Niben101Scf00577g01002.1	sp|Q0T7A9|AES_SHIF8	***-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf05079g00003.1			Unknown protein		
Niben101Scf03714g03012.1	emb|CDY04510.1|	***-	BnaA07g13360D [Brassica napus]	IPR007033 (Transcriptional activator, plants)	
Niben101Scf07510g00017.1	sp|Q94758|DYL1_SCHMA	***-	Dynein light chain	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Scf02217g05008.1	AT2G25850.2	****	poly(A) polymerase 2 LENGTH=800	IPR014492 (Poly(A) polymerase)	GO:0003723 (RNA binding), GO:0004652 (polynucleotide adenylyltransferase activity), GO:0005634 (nucleus), GO:0016779 (nucleotidyltransferase activity), GO:0031123 (RNA 3'-end processing), GO:0043631 (RNA polyadenylation)
Niben101Scf02947g02011.1	gb|ABD28627.2|	--*-	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula]		
Niben101Scf03011g01012.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00780g01009.1	AT1G20330.1	****	sterol methyltransferase 2 LENGTH=361	IPR013705 (Sterol methyltransferase C-terminal), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006694 (steroid biosynthetic process), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf00797g02014.1			Unknown protein		
Niben101Scf01158g03010.1	AT4G21750.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=762	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf02698g00008.1	sp|P54767|DCE_SOLLC	****	Glutamate decarboxylase	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004351 (glutamate decarboxylase activity), GO:0006536 (glutamate metabolic process), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01958g05022.1	sp|Q42521|DCE1_ARATH	*-*-	Glutamate decarboxylase 1	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf05193g01007.1	sp|Q9FG37|GACP3_ARATH	***-	Gamma-tubulin complex component 3	IPR007259 (Gamma-tubulin complex component protein)	GO:0000226 (microtubule cytoskeleton organization), GO:0000922 (spindle pole), GO:0005815 (microtubule organizing center), GO:0005856 (cytoskeleton), GO:0007020 (microtubule nucleation)
Niben101Scf08391g01023.1			Unknown protein		
Niben101Scf09378g00010.1	sp|Q5AP66|SFH5_CANAL	***-	Phosphatidylinositol transfer protein SFH5	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf07253g00008.1	sp|Q6NQJ8|SDG40_ARATH	*-*-	Protein SET DOMAIN GROUP 40	IPR001214 (SET domain)	GO:0005515 (protein binding)
Niben101Scf02008g00017.1	sp|Q9Y673|ALG5_HUMAN	***-	Dolichyl-phosphate beta-glucosyltransferase	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf01033g04009.1	sp|Q9ZU97|VAC14_ARATH	***-	Protein VAC14 homolog	IPR016024 (Armadillo-type fold), IPR021841 (Vacuolar protein 14 C-terminal Fig4-binding domain), IPR026825 (Vacuole morphology and inheritance protein 14)	GO:0005488 (binding), GO:0043550 (regulation of lipid kinase activity), GO:0070772 (PAS complex)
Niben101Ctg13916g00003.1	AT3G17690.1	*-**	cyclic nucleotide gated channel 19 LENGTH=729	IPR005821 (Ion transport domain)	GO:0005216 (ion channel activity), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02459g10010.1	sp|Q9Y140|DHRS7_DROME	****	Dehydrogenase/reductase SDR family protein 7-like	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf03883g05010.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00984g05002.1	ref|XP_007019891.1|	*-*-	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao] gb|EOY17116.1| Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]	IPR029472 (Gag-polypeptide of LTR copia-type)	
Niben101Scf00270g10002.1	ref|XP_002289915.1|	****	ran binding protein 7 [Thalassi 7 [Thalassiosira pseudonana CCMP1335]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf11636g01014.1	sp|O82485|OPT7_ARATH	*-*-	Oligopeptide transporter 7	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf02735g00011.1	sp|Q9SUY0|FB244_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf07722g00004.1	sp|B4RBL4|DADA_PHEZH	--*-	D-amino acid dehydrogenase		
Niben101Scf02160g00010.1			Unknown protein		
Niben101Scf05226g03004.1	sp|Q681N2|PUB15_ARATH	***-	U-box domain-containing protein 15	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf06249g05002.1	ref|XP_002531850.1|	****	calcium ion binding protein, putative [Ricinus communis] gb|EEF30528.1| calcium ion binding protein, putative [Ricinus communis]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02769g01007.1	AT4G15802.1	***-	heat shock factor binding protein LENGTH=86	IPR009643 (Heat shock factor binding 1)	
Niben101Scf11158g02005.1	sp|Q8GT20|BEBT_TOBAC	*-*-	Benzyl alcohol O-benzoyltransferase	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf06245g01017.1	sp|B9SBU9|TPS5_RICCO	****	Terpene synthase 5	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf02511g05008.1	sp|Q9MAT2|PPR10_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00841g02021.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf10881g00033.1	sp|Q1IS52|NUON1_KORVE	*-*-	NADH-quinone oxidoreductase subunit N 1	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf06087g11008.1	AT5G09840.1	*-*-	Putative endonuclease or glycosyl hydrolase LENGTH=924	IPR024768 (Meiosis arrest female protein 1), IPR029060 (PIN domain-like)	GO:0005777 (peroxisome), GO:0010468 (regulation of gene expression)
Niben101Scf00482g09010.1	AT3G45610.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=245	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02860g01013.1	AT3G24315.1	***-	Sec20 family protein LENGTH=293	IPR005606 (Sec20)	
Niben101Scf09599g00015.1	AT1G45976.1	****	S-ribonuclease binding protein 1 LENGTH=325	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017066 (S-ribonuclease binding protein, SBP1, pollen)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf11960g02001.1	ref|XP_007040878.1|	*-*-	Decapping 5-like, putative isoform 5 [Theobroma cacao] gb|EOY25379.1| Decapping 5-like, putative isoform 5 [Theobroma cacao]	IPR010920 (Like-Sm (LSM) domain), IPR019050 (FDF domain), IPR025761 (FFD box), IPR025762 (DFDF domain)	
Niben101Scf01494g08005.1	sp|Q8S9S4|ILL1_ORYSJ	****	IAA-amino acid hydrolase ILR1-like 1	IPR002933 (Peptidase M20)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01917g00004.1	emb|CDY01892.1|	***-	BnaC06g29320D [Brassica napus]		
Niben101Scf13263g00011.1	gb|AAU95633.1|	***-	R1 [Solanum tuberosum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf02194g00022.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf05950g01011.1	sp|A8X493|MOCOS_CAEBR	--*-	Molybdenum cofactor sulfurase		
Niben101Scf05732g00012.1	emb|CDX98387.1|	*-*-	BnaC06g17480D [Brassica napus]		
Niben101Scf09365g00029.1	AT3G18290.1	****	zinc finger protein-related LENGTH=1254	IPR008913 (Zinc finger, CHY-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017921 (Zinc finger, CTCHY-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06562g00007.1	AT5G63060.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=263	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf02786g02005.1	sp|O49250|CYCLD_ANTMA	*-*-	Transcription factor CYCLOIDEA	IPR005333 (Transcription factor, TCP)	
Niben101Scf02344g01012.1	sp|Q3E9B5|PTR51_ARATH	*-*-	Protein NRT1/ PTR FAMILY 7.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf06663g00019.1	AT2G22620.1	***-	Rhamnogalacturonate lyase family protein LENGTH=677	IPR008979 (Galactose-binding domain-like), IPR010325 (Rhamnogalacturonate lyase), IPR011013 (Galactose mutarotase-like domain), IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf02139g02009.1	AT1G53780.2	*-**	peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases LENGTH=620	IPR003959 (ATPase, AAA-type, core), IPR009010 (Aspartate decarboxylase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029067 (CDC48 domain 2-like)	GO:0005524 (ATP binding)
Niben101Scf04654g04001.1	sp|Q27368|E2F_DROME	*-**	Transcription factor E2f	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR015633 (E2F Family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005667 (transcription factor complex), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01319g04016.1	sp|Q2HJ81|TBB6_BOVIN	***-	Tubulin beta-6 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf08127g00004.1	sp|Q9ZPQ3|GEK1_ARATH	****	D-aminoacyl-tRNA deacylase	IPR007508 (D-aminoacyl-tRNA deacylase)	GO:0016788 (hydrolase activity, acting on ester bonds), GO:0051499 (D-aminoacyl-tRNA deacylase activity)
Niben101Scf03712g00006.1	emb|CAE03517.2|	--*-	OsJ_16233 [Oryza sativa Japonica Group]		
Niben101Scf01718g09030.1	AT4G35160.1	****	O-methyltransferase family protein LENGTH=382	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf08649g02001.1	AT1G76240.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=308	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf01151g00003.1	sp|Q9SYK0|HEXO2_ARATH	****	Beta-hexosaminidase 2	IPR017853 (Glycoside hydrolase superfamily), IPR025705 (Beta-hexosaminidase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004563 (beta-N-acetylhexosaminidase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00253g01016.1	sp|Q8GXT3|BH123_ARATH	***-	Transcription factor bHLH123	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02426g02026.1	AT3G24506.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=149		
Niben101Scf08721g00001.1	AT4G11400.1	*-**	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=573	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08653g05018.1	sp|Q9ZVX5|PP156_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06235g02005.1	sp|Q2T9Z7|KLHL9_BOVIN	*-*-	Kelch-like protein 9	IPR015915 (Kelch-type beta propeller), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf00923g01004.1	gb|AGY62799.1|	*-*-	orf148 (mitochondrion) [Eruca vesicaria subsp. sativa] gb|AHY20342.1| hypothetical protein (mitochondrion) (mitochondrion) [Brassica juncea var. tumida] gb|AIC83308.1| orf148 (mitochondrion) [Brassica oleracea var. botrytis]		
Niben101Scf10015g09009.1	gb|ABF95368.1|	*-*-	expressed protein [Oryza sativa Japonica Group]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf00654g04021.1	sp|Q38967|AAP2_ARATH	***-	Amino acid permease 2	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf10248g00007.1	AT2G31040.1	***-	ATP synthase protein I -related LENGTH=350		
Niben101Scf03512g02008.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf21196g00008.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf05177g02005.1	AT4G13400.1	***-	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=357	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf02606g04005.1	ref|NP_001055417.1|	***-	product [Oryza sativa Japonica Group]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf08991g02002.1	AT2G27820.1	****	prephenate dehydratase 1 LENGTH=424	IPR001086 (Prephenate dehydratase), IPR002912 (ACT domain)	GO:0004664 (prephenate dehydratase activity), GO:0008152 (metabolic process), GO:0009094 (L-phenylalanine biosynthetic process), GO:0016597 (amino acid binding)
Niben101Scf34542g00004.1	sp|O49686|PYR1_ARATH	***-	Abscisic acid receptor PYR1	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf11727g00006.1	emb|CDY00123.1|	***-	BnaC09g01780D [Brassica napus]	IPR007679 (Protein of unknown function DUF569), IPR008999 (Actin cross-linking)	
Niben101Scf07073g02006.1	ref|NP_179201.1|	***-	S-aden [Arabidopsis thaliana]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01917g12003.1	sp|Q6FFZ6|RUTB_ACIAD	***-	Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB	IPR000868 (Isochorismatase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf06819g03003.1	gb|KEH31498.1|	*-*-	F-box protein, putative [Medicago truncatula]		
Niben101Scf03221g01018.1	ref|YP_005090400.1|	*-*-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf05111g01004.1	sp|P0C2F7|Y1947_ARATH	***-	Kelch repeat-containing protein	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf00473g00011.1	gb|AAR99826.1|	*-**	alcohol acyl transferase [Malus domestica]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00929g01011.1	sp|O75446|SAP30_HUMAN	--*-	Histone deacetylase complex subunit SAP30	IPR024145 (Histone deacetylase complex subunit SAP30/SAP30-like), IPR025718 (Histone deacetylase complex subunit SAP30, Sin3 binding domain)	GO:0005515 (protein binding)
Niben101Scf00419g11020.1	sp|Q8LDQ4|TAP46_ARATH	*-*-	PP2A regulatory subunit TAP46	IPR007304 (TAP42-like protein)	GO:0009966 (regulation of signal transduction)
Niben101Scf00445g00005.1	AT5G50780.1	***-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=819	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf08445g02021.1			Unknown protein		
Niben101Scf09151g02004.1	AT5G07900.1	****	Mitochondrial transcription termination factor family protein LENGTH=405	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07616g02013.1	sp|Q5HRD6|ADH_STAEQ	*-*-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07459g00008.1			Unknown protein		
Niben101Scf15227g00027.1	sp|P93654|SYP22_ARATH	***-	Syntaxin-22	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf11009g00021.1	sp|P53091|MCM6_YEAST	****	DNA replication licensing factor MCM6	IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027925 (MCM N-terminal domain)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006260 (DNA replication)
Niben101Scf22905g00008.1			Unknown protein		
Niben101Scf06008g01006.1	AT3G15030.1	*-*-	TCP family transcription factor 4 LENGTH=420	IPR005333 (Transcription factor, TCP)	
Niben101Scf01198g03003.1			Unknown protein		
Niben101Scf00132g01018.1			Unknown protein		
Niben101Scf10095g02018.1	AT1G55690.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=625	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf00217g02009.1	AT3G59470.1	***-	Far-red impaired responsive (FAR1) family protein LENGTH=251	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf02346g02003.1	ref|XP_002535305.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF27078.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00104g03002.1	AT1G03070.1	***-	Bax inhibitor-1 family protein LENGTH=247	IPR006214 (Bax inhibitor 1-related)	
Niben101Scf04854g02006.1	AT5G67320.1	***-	WD-40 repeat family protein LENGTH=613	IPR006594 (LisH dimerisation motif), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf01646g00009.1	gb|ACN57274.1|	*-*-	At1g62520-like protein [Capsella grandiflora]	IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain)	GO:0003950 (NAD+ ADP-ribosyltransferase activity)
Niben101Scf02902g02003.1	sp|Q30ZN0|F16PA_DESAG	****	Fructose-1,6-bisphosphatase class 1	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf09792g03014.1	sp|Q93XX8|NOP10_ARATH	****	H/ACA ribonucleoprotein complex subunit 3-like protein	IPR007264 (H/ACA ribonucleoprotein complex, subunit Nop10)	GO:0001522 (pseudouridine synthesis), GO:0030515 (snoRNA binding), GO:0042254 (ribosome biogenesis), GO:0072588 (box H/ACA RNP complex)
Niben101Scf07113g00007.1	gb|AFV66582.1|	*-*-	LSG [Saccharum hybrid cultivar]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf08804g01012.1	sp|P85076|PME_ACTDE	*-**	Pectinesterase	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01818g08019.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01278g03004.1	emb|CDX81765.1|	***-	BnaC08g38360D [Brassica napus]		
Niben101Scf16021g00001.1	sp|P59015|VPS18_DANRE	*-*-	Vacuolar protein sorting-associated protein 18 homolog	IPR000547 (Clathrin, heavy chain/VPS, 7-fold repeat), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport)
Niben101Scf01837g03004.1	AT1G71090.1	*-*-	Auxin efflux carrier family protein LENGTH=457	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf10305g00006.1	sp|O08550|KMT2B_MOUSE	*-**	Histone-lysine N-methyltransferase 2B	IPR001214 (SET domain), IPR003105 (SRA-YDG), IPR003616 (Post-SET domain), IPR007728 (Pre-SET domain), IPR015947 (PUA-like domain), IPR025794 (Histone H3-K9 methyltransferase, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016571 (histone methylation), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0042393 (histone binding)
Niben101Scf08150g00004.1	AT2G30020.1	****	Protein phosphatase 2C family protein LENGTH=396	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf00650g06001.1	sp|O04135|KNAP2_MALDO	*-*-	Homeobox protein knotted-1-like 2	IPR005539 (ELK), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf39361g00001.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06590g01003.1	sp|Q3SZ21|RPP30_BOVIN	*-**	Ribonuclease P protein subunit p30	IPR002738 (RNase P subunit p30)	GO:0003824 (catalytic activity), GO:0004540 (ribonuclease activity), GO:0008033 (tRNA processing)
Niben101Scf02474g00015.1	AT1G15730.1	***-	Cobalamin biosynthesis CobW-like protein LENGTH=448	IPR003495 (CobW/HypB/UreG domain), IPR011629 (Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf14312g00007.1			Unknown protein		
Niben101Scf05017g06020.1	sp|Q0IQU1|LAC22_ORYSJ	***-	Laccase-22	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03039g03007.1	sp|O02773|MA1A1_PIG	*-**	Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA	IPR001382 (Glycoside hydrolase, family 47)	GO:0004571 (mannosyl-oligosaccharide 1,2-alpha-mannosidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane)
Niben101Scf02211g00006.1			Unknown protein		
Niben101Scf04438g02004.1	sp|P52839|SOT12_ARATH	****	Cytosolic sulfotransferase 12	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf04487g06002.1	sp|Q8U4D3|SYN_PYRFU	****	Asparagine--tRNA ligase	IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004815 (aspartate-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006422 (aspartyl-tRNA aminoacylation)
Niben101Scf05247g02005.1	sp|Q9FLN5|VA0E1_ARATH	*-*-	V-type proton ATPase subunit e1	IPR000095 (CRIB domain)	
Niben101Scf03373g01002.1	AT5G10200.1	***-	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein LENGTH=631	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02510g02001.1	sp|Q9SAC4|FB2_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf09467g02012.1	sp|Q9LRV2|PP256_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf08209g00002.1	sp|Q9FX85|PER10_ARATH	****	Peroxidase 10	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05417g00013.1	AT1G10190.1	***-	Protein of Unknown Function (DUF239) LENGTH=396	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf10122g00005.1	AT5G05210.1	***-	Surfeit locus protein 6 LENGTH=386	IPR007019 (Surfeit locus 6), IPR029188 (Ribosomal RNA-processing protein 14, N-terminal), IPR029190 (Ribosomal RNA-processing protein 14/surfeit locus protein 6, C-terminal domain)	
Niben101Scf03863g06009.1	AT5G13020.1	***-	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein LENGTH=397	IPR005491 (EMSY N-terminal)	
Niben101Scf02853g05017.1	sp|Q5XIB4|UFSP2_RAT	*-*-	Ufm1-specific protease 2	IPR012462 (Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2)	
Niben101Scf09040g00009.1	gb|ABF93459.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR018996 (Inner nuclear membrane protein MAN1)	GO:0005639 (integral component of nuclear inner membrane)
Niben101Scf04528g12001.1	sp|P14721|DFRA_ANTMA	***-	Dihydroflavonol-4-reductase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf01135g02006.1	sp|A2ZBG5|PSK2_ORYSI	-**-	Phytosulfokines 2	IPR009438 (Phytosulfokine)	GO:0005576 (extracellular region), GO:0008083 (growth factor activity), GO:0008283 (cell proliferation)
Niben101Scf00276g02010.1	ref|WP_027832499.1|	*-*-	mechanosensitive ion channel protein MscS [Marinobacter sp. HL-58]	IPR006685 (Mechanosensitive ion channel MscS), IPR010920 (Like-Sm (LSM) domain)	GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02074g02027.1			Unknown protein		
Niben101Scf04060g01013.1	sp|Q8W1X2|PDXK_ARATH	*-**	Pyridoxal kinase	IPR004625 (Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase), IPR029056 (Ribokinase-like)	GO:0008478 (pyridoxal kinase activity), GO:0009443 (pyridoxal 5'-phosphate salvage)
Niben101Scf04763g02003.1	gb|AEG80469.1|	*-*-	maturase, partial (mitochondrion) [Syringa vulgaris]		
Niben101Scf04091g00029.1	sp|A7X2Y0|DNAJ_STAA1	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf05654g00024.1	sp|Q9MUC0|PSAA_GINBI	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf03924g01008.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]	IPR002182 (NB-ARC), IPR021929 (Late blight resistance protein R1)	GO:0043531 (ADP binding)
Niben101Scf03034g00008.1	gb|AES73124.2|	*-*-	localization and RNA pol II promoter Fmp27 domain protein [Medicago truncatula]	IPR019443 (FMP27,  C-terminal)	
Niben101Scf02819g05020.1	sp|Q5F3R2|KDM5B_CHICK	--*-	Lysine-specific demethylase 5B	IPR003347 (JmjC domain)	
Niben101Scf00975g02001.1			Unknown protein		
Niben101Scf05535g02001.1	sp|Q5CZL1|GDAP2_XENTR	*-*-	Ganglioside-induced differentiation-associated protein 2	IPR001251 (CRAL-TRIO domain)	
Niben101Scf03580g01003.1	sp|Q6K7E6|ERF1_ORYSJ	--**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10132g01033.1	sp|Q9ZR41|GLRX_SOLLC	***-	Glutaredoxin	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01623g00006.1			Unknown protein		
Niben101Scf00650g02005.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04741g02007.1	sp|O94880|PHF14_HUMAN	*-*-	PHD finger protein 14	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00713g04002.1	sp|Q62848|ARFG1_RAT	*-**	ADP-ribosylation factor GTPase-activating protein 1	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Ctg12658g00002.1	emb|CDY35217.1|	*-*-	BnaA01g08140D [Brassica napus]		
Niben101Scf07851g00002.1	sp|Q9SKN2|DRB2_ARATH	*-*-	Double-stranded RNA-binding protein 2		
Niben101Scf08855g02013.1	AT1G27320.1	****	histidine kinase 3 LENGTH=1036	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR006189 (CHASE), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01795g12002.1	AT4G25520.1	*-*-	SEUSS-like 1 LENGTH=748	IPR029005 (LIM-domain binding protein/SEUSS)	
Niben101Scf00207g02010.1	ref|XP_003613390.1|	*-*-	PttB [Medicago truncatula]		
Niben101Scf10575g00007.1	sp|Q7ZWF4|RN145_DANRE	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04688g01016.1	gb|KEH29863.1|	***-	methyltransferase type 11 [Medicago truncatula]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf03357g00037.1	ref|NP_001062726.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAF24640.1| [Oryza sativa Japonica Group]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf34798g00009.1	sp|Q7XA78|D27_ARATH	*-*-	Beta-carotene isomerase D27, chloroplastic	IPR025114 (Domain of unknown function DUF4033)	
Niben101Scf00509g00004.1	sp|A4QJG0|RR7_AETCO	*-**	30S ribosomal protein S7, chloroplastic	IPR000235 (Ribosomal protein S5/S7), IPR006032 (Ribosomal protein S12/S23), IPR023798 (Ribosomal protein S7 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf04405g00007.1	sp|Q339N5|CSLH1_ORYSJ	****	Cellulose synthase-like protein H1	IPR005150 (Cellulose synthase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf17478g00002.1			Unknown protein		
Niben101Scf07608g03004.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf02296g00016.1	AT5G40760.1	****	glucose-6-phosphate dehydrogenase 6 LENGTH=515	IPR001282 (Glucose-6-phosphate dehydrogenase)	GO:0004345 (glucose-6-phosphate dehydrogenase activity), GO:0006006 (glucose metabolic process), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07311g01014.1			Unknown protein		
Niben101Scf03817g16002.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04918g00012.1	AT2G20990.3	***-	synaptotagmin A LENGTH=579	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf11137g00006.1	AT5G58080.1	*-*-	response regulator 18 LENGTH=618	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01722g01005.1	sp|Q9SXD8|PPR90_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05372g00007.1	sp|Q2KII4|ELOC_BOVIN	***-	Transcription elongation factor B polypeptide 1	IPR001232 (S-phase kinase-associated protein 1-like), IPR011333 (BTB/POZ fold)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf03431g00006.1	sp|B8J1C7|NUON_DESDA	*-*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf06641g01013.1	sp|Q8QZZ8|RAB38_MOUSE	***-	Ras-related protein Rab-38	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf05901g04004.1	sp|P09991|GLYC_LYCVA	--*-	Pre-glycoprotein polyprotein GP complex		
Niben101Scf13411g04014.1	sp|Q66KH2|ERGI3_XENLA	***-	Endoplasmic reticulum-Golgi intermediate compartment protein 3	IPR012936 (Endoplasmic reticulum vesicle transporter, C-terminal)	
Niben101Scf08127g12003.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01281g06013.1	sp|Q5PP70|NTM1_ARATH	*-**	Alpha N-terminal protein methyltransferase 1	IPR008576 (Protein of unknown function DUF858, methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf04993g00005.1	sp|Q10QH3|CSPLL_ORYSJ	*-*-	CASP-like protein	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf01343g00017.1	AT5G10250.1	***-	Phototropic-responsive NPH3 family protein LENGTH=607	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain), IPR029959 (Root phototropism protein 3-like)	GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf00568g04020.1	sp|Q2PMQ2|RR11_SOYBN	***-	30S ribosomal protein S11, chloroplastic	IPR001971 (Ribosomal protein S11), IPR011262 (DNA-directed RNA polymerase, insert domain)	GO:0003735 (structural constituent of ribosome), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005840 (ribosome), GO:0006351 (transcription, DNA-templated), GO:0006412 (translation), GO:0046983 (protein dimerization activity)
Niben101Scf03266g00003.1			Unknown protein		
Niben101Scf04512g00003.1	AT5G65440.3	*-*-	unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=1125		
Niben101Scf00996g00017.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf00577g12010.1	sp|Q8RWD0|COL16_ARATH	****	Zinc finger protein CONSTANS-LIKE 16	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf09544g01027.1	sp|A6H779|FBXL2_BOVIN	*-*-	F-box/LRR-repeat protein 2	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf01368g00021.1	AT2G37390.1	***-	Chloroplast-targeted copper chaperone protein LENGTH=259	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf01681g02007.1	AT1G74040.1	****	2-isopropylmalate synthase 1 LENGTH=631	IPR005671 (2-isopropylmalate synthase, bacterial-type)	GO:0003824 (catalytic activity), GO:0003852 (2-isopropylmalate synthase activity), GO:0009098 (leucine biosynthetic process), GO:0019752 (carboxylic acid metabolic process), GO:0046912 (transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer)
Niben101Scf04655g03001.1	sp|Q3ZBV9|DHR11_BOVIN	--**	Dehydrogenase/reductase SDR family member 11	IPR002198 (Short-chain dehydrogenase/reductase SDR)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf00635g05010.1	sp|P83947|PME1_FICPW	*-**	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02151g04014.1	sp|P49098|CYB5_TOBAC	***-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf17290g01003.1			Unknown protein		
Niben101Scf07824g00009.1	AT4G32410.1	****	cellulose synthase 1 LENGTH=1081	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf00152g03029.1	gb|AIU49228.1|	*-*-	ARC6, partial [Arabidopsis thaliana]	IPR001623 (DnaJ domain)	
Niben101Scf02111g17001.1	gb|AFI47463.1|	****	invertase inhibitor [Solanum tuberosum]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf01497g03005.1	sp|Q5SH15|ISPT_THET8	*-**	Isoprenyl transferase	IPR001441 (Decaprenyl diphosphate synthase-like)	GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf02227g05008.1	sp|Q9D1J3|SARNP_MOUSE	--*-	SAP domain-containing ribonucleoprotein		
Niben101Scf00136g01010.1	sp|Q9FLJ2|NC100_ARATH	***-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf16939g00010.1	sp|Q8VI02|PP4R1_RAT	*-*-	Serine/threonine-protein phosphatase 4 regulatory subunit 1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02896g00007.1	AT2G12190.1	***-	Cytochrome P450 superfamily protein LENGTH=512	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01293g00002.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf16622g01019.1	sp|Q9FJZ9|PER72_ARATH	****	Peroxidase 72	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08426g00009.1	AT3G01490.1	****	Protein kinase superfamily protein LENGTH=411	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06385g02008.1	AT1G19250.1	*-*-	flavin-dependent monooxygenase 1 LENGTH=530		
Niben101Scf02430g01014.1			Unknown protein		
Niben101Scf01976g00011.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03328g02001.1	sp|Q8LEK4|TRL21_ARATH	*-*-	Thioredoxin-like 2-1, chloroplastic	IPR005746 (Thioredoxin)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03267g00056.1	sp|Q09FY1|PSBA_NANDO	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf00488g04002.1	gb|KEH31892.1|	*-*-	WW domain-binding protein [Medicago truncatula]		
Niben101Scf01634g06002.1	AT5G04160.1	***-	Nucleotide-sugar transporter family protein LENGTH=309	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf04131g01019.1	sp|F1LNJ2|U520_RAT	*-*-	U5 small nuclear ribonucleoprotein 200 kDa helicase	IPR004179 (Sec63 domain), IPR027137 (Translocation protein Sec63)	GO:0008565 (protein transporter activity), GO:0031204 (posttranslational protein targeting to membrane, translocation)
Niben101Scf07899g00010.1	emb|CDX87029.1|	*-*-	BnaC09g03440D [Brassica napus]		
Niben101Scf06556g11008.1	sp|Q43043|PME_PETIN	****	Pectinesterase	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf14166g00013.1	sp|Q9M7K4|POT5_ARATH	****	Potassium transporter 5	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf05727g00006.1	sp|P34102|PK3_DICDI	*-**	Protein kinase 3	IPR011009 (Protein kinase-like domain), IPR016024 (Armadillo-type fold)	GO:0004672 (protein kinase activity), GO:0005488 (binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00175g02014.1	AT3G21760.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=485	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02006g04012.1	AT1G03610.1	***-	Protein of unknown function (DUF789) LENGTH=308	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf03444g03004.1	sp|Q8L6Y3|PP396_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00152g06001.1	sp|Q8W4G6|CRK15_ARATH	*-**	Cysteine-rich receptor-like protein kinase 15	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00058g00001.1	gb|AGZ88227.1|	*-*-	cytokinesis protein, partial [Polypodium glycyrrhiza]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04593g00003.1	sp|Q8BHI7|ELOV5_MOUSE	***-	Elongation of very long chain fatty acids protein 5	IPR002076 (ELO family)	GO:0016021 (integral component of membrane)
Niben101Scf03822g00014.1	AT2G17290.1	****	Calcium-dependent protein kinase family protein LENGTH=544	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03096g01013.1	sp|Q8RWD0|COL16_ARATH	*-**	Zinc finger protein CONSTANS-LIKE 16	IPR000315 (Zinc finger, B-box), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf03455g05017.1	sp|Q9KQH9|FABF_VIBCH	***-	3-oxoacyl-[acyl-carrier-protein] synthase 2	IPR017568 (3-oxoacyl-[acyl-carrier-protein] synthase 2), IPR020841 (Polyketide synthase, beta-ketoacyl synthase domain)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf09156g00024.1	sp|Q9Y259|CHKB_HUMAN	****	Choline/ethanolamine kinase	IPR011009 (Protein kinase-like domain), IPR026712 (Choline/Ethanolamine kinase)	GO:0016301 (kinase activity), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0046474 (glycerophospholipid biosynthetic process)
Niben101Scf02155g00004.1	sp|Q8H965|NPC6_ARATH	***-	Non-specific phospholipase C6	IPR007312 (Phosphoesterase), IPR017850 (Alkaline-phosphatase-like, core domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Ctg09115g00002.1	gb|ABD32666.1|	***-	conserved hypothetical protein [Medicago truncatula] gb|AES64401.2| hypothetical protein [Medicago truncatula]		
Niben101Scf04331g04007.1	AT1G04190.1	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=328		
Niben101Scf10412g02018.1	sp|P06237|NOH4_RHIML	***-	Nodulation protein H	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01670g04001.1	sp|Q72M46|SYE_LEPIC	****	Glutamate--tRNA ligase	IPR000924 (Glutamyl/glutaminyl-tRNA synthetase)	GO:0000049 (tRNA binding), GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004818 (glutamate-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006424 (glutamyl-tRNA aminoacylation), GO:0016876 (ligase activity, forming aminoacyl-tRNA and related compounds), GO:0043039 (tRNA aminoacylation)
Niben101Scf02328g00006.1	sp|Q9C8T7|PP101_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00770g02027.1	emb|CED79808.1|	*-*-	Ycf1 protein (chloroplast) [Hesperelaea palmeri]		
Niben101Scf01719g01005.1	AT5G43630.1	****	zinc knuckle (CCHC-type) family protein LENGTH=831	IPR001878 (Zinc finger, CCHC-type), IPR004343 (Plus-3)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006352 (DNA-templated transcription, initiation), GO:0008270 (zinc ion binding), GO:0016570 (histone modification)
Niben101Scf07034g08001.1	sp|Q9SD33|U183_ARATH	*-*-	UPF0183 protein	IPR005373 (Uncharacterised protein family UPF0183)	
Niben101Scf13139g00003.1	sp|Q9FJX5|BT4_ARATH	***-	BTB/POZ and TAZ domain-containing protein 4	IPR000197 (Zinc finger, TAZ-type), IPR011333 (BTB/POZ fold)	GO:0003712 (transcription cofactor activity), GO:0004402 (histone acetyltransferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf05853g00004.1	sp|Q94BY6|ATL75_ARATH	--*-	RING-H2 finger protein ATL75		
Niben101Scf03810g03005.1			Unknown protein		
Niben101Scf00894g03005.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf16022g01006.1	sp|Q02067|ASCL1_MOUSE	--*-	Achaete-scute homolog 1		
Niben101Scf03927g01003.1	sp|P37278|ATCL_SYNE7	****	Calcium-transporting ATPase	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0005388 (calcium-transporting ATPase activity), GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding), GO:0070588 (calcium ion transmembrane transport)
Niben101Scf04752g00009.1	AT5G02880.1	****	ubiquitin-protein ligase 4 LENGTH=1502	IPR000569 (HECT), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding)
Niben101Scf05108g04019.1	AT4G12700.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=561		
Niben101Scf10566g01005.1			Unknown protein		
Niben101Scf02283g00007.1	AT1G01320.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=1797	IPR011990 (Tetratricopeptide-like helical domain), IPR023231 (GSKIP domain), IPR028275 (Clustered mitochondria protein, N-terminal)	GO:0005515 (protein binding)
Niben101Scf02192g00005.1	emb|CDX76744.1|	***-	BnaC08g33300D [Brassica napus]		
Niben101Scf11124g01024.1	AT3G25130.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). LENGTH=406		
Niben101Scf05439g02059.1	gb|ACI95887.1|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Isoetes engelmannii]		
Niben101Scf00231g07011.1	sp|Q9ZU49|LPP1_ARATH	***-	Lipid phosphate phosphatase 1	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase), IPR002885 (Pentatricopeptide repeat), IPR028681 (Lipid phosphate phosphatase, plant)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Scf00988g04017.1	sp|Q04739|GAL83_YEAST	--*-	SNF1 protein kinase subunit beta-3	IPR006828 (Association with the SNF1 complex (ASC) domain)	GO:0005515 (protein binding)
Niben101Scf29530g00004.1			Unknown protein		
Niben101Scf02858g02013.1	AT3G60390.1	***-	homeobox-leucine zipper protein 3 LENGTH=315	IPR003106 (Leucine zipper, homeobox-associated), IPR006712 (HD-ZIP protein, N-terminal), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03794g01026.1	sp|Q07761|RL23A_TOBAC	***-	60S ribosomal protein L23a	IPR005633 (Ribosomal protein L23/L25, N-terminal), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01704g00002.1	sp|Q73IV4|DNAJ_WOLPM	***-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf04000g00002.1	sp|Q9LZQ1|TBL6_ARATH	***-	Protein trichome birefringence-like 6	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf02492g00005.1	sp|Q9LUR0|CNDH2_ARATH	*-*-	Condensin-2 complex subunit H2	IPR009378 (Non-SMC condensin II complex, subunit H2-like)	
Niben101Scf00991g03007.1	ref|XP_007026001.1|	***-	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao] gb|EOY28623.1| Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf00802g00009.1			Unknown protein		
Niben101Scf00090g04005.1	AT5G09890.2	****	Protein kinase family protein LENGTH=516	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03607g00008.1	ref|XP_007040994.1|	***-	Pentatricopeptide repeat-containing protein, putative [Theobroma cacao] gb|EOX96825.1| Pentatricopeptide repeat-containing protein, putative [Theobroma cacao]		
Niben101Scf11261g01002.1	AT1G54820.1	****	Protein kinase superfamily protein LENGTH=458	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07741g03001.1	ref|XP_007027253.1|	*-*-	ROP interactive partner 3 isoform 1 [Theobroma cacao] gb|EOY07755.1| ROP interactive partner 3 isoform 1 [Theobroma cacao]		
Niben101Scf07638g04020.1	sp|Q9LTT8|VCS_ARATH	*-*-	Enhancer of mRNA-decapping protein 4		
Niben101Scf08078g02005.1	sp|Q9FXI5|IQD32_ARATH	***-	Protein IQ-DOMAIN 32	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf04284g00022.1	sp|Q6DFF6|KLH20_XENLA	*-*-	Kelch-like protein 20	IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf04567g03028.1	sp|Q9JLC8|SACS_MOUSE	*-*-	Sacsin	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf01695g00001.1	sp|Q84N38|PVIP_NICBE	***-	OBERON-like protein	IPR004082 (Protein OBERON)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05245g01008.1	gb|KEH37012.1|	***-	E3 ubiquitin-protein ligase LIN-like protein, putative [Medicago truncatula]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01374g06006.1	sp|Q9T076|ENL2_ARATH	*-*-	Early nodulin-like protein 2	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf03094g05003.1	AT2G34585.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=81		
Niben101Scf03390g12008.1	sp|P27898|MYBP_MAIZE	*-*-	Myb-related protein P	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Ctg10012g00001.1	sp|Q9FI46|CRL_ARATH	*-*-	Chromophore lyase CRL, chloroplastic	IPR010404 (Chromophore lyase CpcT/CpeT)	GO:0017009 (protein-phycocyanobilin linkage)
Niben101Scf05848g05011.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00956g01014.1	emb|CDX75203.1|	*-*-	BnaA01g04990D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf05776g03006.1	AT3G24255.1	*-*-	RNA-directed DNA polymerase (reverse transcriptase)-related family protein LENGTH=746		
Niben101Scf02907g00004.1	sp|O31186|ADHA_RHIME	*-*-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf39366g00002.1	AT3G59520.1	***-	RHOMBOID-like protein 13 LENGTH=269	IPR022764 (Peptidase S54, rhomboid domain)	GO:0004252 (serine-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf27753g00010.1	sp|Q9SWB6|PM36_SOYBN	*-*-	Seed maturation protein PM36	IPR016084 (Haem oxygenase-like, multi-helical)	
Niben101Scf22792g00002.1	sp|Q8DMM5|RL16_THEEB	***-	50S ribosomal protein L16	IPR000114 (Ribosomal protein L16), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf09184g02011.1	AT4G32440.2	***-	Plant Tudor-like RNA-binding protein LENGTH=393	IPR005491 (EMSY N-terminal), IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf04624g00029.1	gb|KEH36675.1|	*-*-	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf01917g09003.1	AT1G65730.1	***-	YELLOW STRIPE like 7 LENGTH=688	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf05040g00003.1			Unknown protein		
Niben101Scf04331g04005.1			Unknown protein		
Niben101Scf04436g15045.1	sp|Q9SI78|PPR93_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03647g03023.1	AT3G54040.1	***-	PAR1 protein LENGTH=183	IPR009489 (PAR1)	
Niben101Scf18308g01006.1	AT5G58000.1	*-*-	Reticulon family protein LENGTH=487	IPR003388 (Reticulon)	
Niben101Scf07080g03009.1	sp|Q9ZSA2|CDPKL_ARATH	*-*-	Calcium-dependent protein kinase 21		
Niben101Scf15953g01011.1	AT1G16630.1	*-*-	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=845		
Niben101Scf00784g02022.1	sp|Q9FZ70|FDL1_ARATH	*-*-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf04015g01004.1	sp|O51602|GPMA_BORBU	***-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	IPR001345 (Phosphoglycerate/bisphosphoglycerate mutase, active site), IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf16714g00001.1	sp|Q38825|IAA7_ARATH	***-	Auxin-responsive protein IAA7	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf03898g03010.1	AT1G11545.1	****	xyloglucan endotransglucosylase/hydrolase 8 LENGTH=305	IPR008264 (Beta-glucanase), IPR010713 (Xyloglucan endo-transglycosylase, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf04462g00007.1	sp|A0RQI0|EFG_CAMFF	*-*-	Elongation factor G	IPR000640 (Translation elongation factor EFG, V domain), IPR009022 (Elongation factor G, III-V domain), IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0005525 (GTP binding)
Niben101Scf02057g01002.1	sp|Q8S944|DRP3A_ARATH	*-*-	Dynamin-related protein 3A	IPR000375 (Dynamin central domain), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00133g04023.1			Unknown protein		
Niben101Scf09696g01112.1			Unknown protein		
Niben101Scf04495g00031.1	sp|O24600|RPOT3_ARATH	*-**	DNA-directed RNA polymerase 3, chloroplastic	IPR002092 (DNA-directed RNA polymerase, phage-type), IPR029262 (DNA-directed RNA polymerase N-terminal domain)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf10575g02013.1	sp|Q9SYZ7|U496A_ARATH	***-	UPF0496 protein	IPR007749 (Protein of unknown function DUF677)	
Niben101Scf05609g02003.1	gb|KEH36917.1|	*-*-	F-box protein interaction domain protein [Medicago truncatula]	IPR017451 (F-box associated interaction domain)	
Niben101Scf13741g02012.1	AT4G34270.1	***-	TIP41-like family protein LENGTH=290	IPR007303 (TIP41-like protein)	
Niben101Scf00574g05004.1	gb|AES58928.2|	--*-	F-box/RNI/FBD-like domain protein [Medicago truncatula]		
Niben101Scf01013g06001.1	sp|Q6RZZ9|KIF13_DICDI	*-**	Kinesin-related protein 13	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00028g04011.1	emb|CDY47288.1|	*-*-	BnaA10g03580D [Brassica napus]		
Niben101Scf02829g01014.1	sp|Q9BTW9|TBCD_HUMAN	*-*-	Tubulin-specific chaperone D		
Niben101Scf07965g04001.1	sp|Q9QXA5|LSM4_MOUSE	*-*-	U6 snRNA-associated Sm-like protein LSm4	IPR010920 (Like-Sm (LSM) domain), IPR027141 (U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3)	
Niben101Scf04220g02001.1			Unknown protein		
Niben101Scf22424g01012.1	gb|KEH36748.1|	*-*-	F-box protein interaction domain protein [Medicago truncatula]		
Niben101Scf05231g00006.1	AT3G16560.1	***-	Protein phosphatase 2C family protein LENGTH=493	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf00783g02003.1	sp|Q9M2Z5|FBL53_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf03716g03002.1	gb|KEH44491.1|	***-	DUF674 family protein [Medicago truncatula]	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf10678g00001.1	sp|Q9T0D6|PP306_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02440g01009.1	AT4G21380.1	*-**	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR011009 (Protein kinase-like domain), IPR013227 (PAN-2 domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf05827g06018.1	sp|Q54I81|EI2BA_DICDI	--*-	Translation initiation factor eIF-2B subunit alpha		
Niben101Scf01441g02001.1	sp|Q8TAG9|EXOC6_HUMAN	****	Exocyst complex component 6	IPR007225 (Exocyst complex subunit Sec15-like)	GO:0000145 (exocyst), GO:0006904 (vesicle docking involved in exocytosis)
Niben101Scf10041g00009.1	AT1G14060.1	*-*-	GCK domain-containing protein LENGTH=179	IPR012891 (GCK)	
Niben101Scf01033g04008.1	AT1G24620.1	****	EF hand calcium-binding protein family LENGTH=186	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf09610g00015.1	sp|Q9FPT1|UBP12_ARATH	****	Ubiquitin carboxyl-terminal hydrolase 12	IPR008974 (TRAF-like), IPR024729 (ICP0-binding domain of Ubiquitin-specific protease 7), IPR028889 (Ubiquitin specific protease domain), IPR029346 (Ubiquitin carboxyl-terminal hydrolase, C-terminal)	GO:0005515 (protein binding), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf00757g05005.1	AT3G15030.1	*-*-	TCP family transcription factor 4 LENGTH=420	IPR005333 (Transcription factor, TCP)	
Niben101Scf11535g00006.1	sp|Q3KA81|LOLA_PSEPF	--*-	Outer-membrane lipoprotein carrier protein		
Niben101Scf05430g01004.1	sp|O80638|WTR14_ARATH	***-	WAT1-related protein	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01521g12006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01208g03022.1	sp|Q93V93|PER44_ARATH	****	Peroxidase 44	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01998g03002.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf13540g04028.1	sp|Q1PFD9|TBL31_ARATH	***-	Protein trichome birefringence-like 31	IPR026057 (PC-Esterase)	
Niben101Scf02289g05018.1	sp|Q94KT8|COBRA_ARATH	***-	Protein COBRA	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf02597g06014.1	AT2G41020.1	*-*-	WW domain-containing protein LENGTH=463		
Niben101Scf04585g00006.1	sp|Q9P4D1|ACT_PICPG	****	Actin	IPR004000 (Actin family)	GO:0005524 (ATP binding), GO:0005856 (cytoskeleton), GO:0005885 (Arp2/3 protein complex), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf02902g01007.1	gb|AAG31013.1|	*-*-	tospovirus resistance protein A [Solanum lycopersicum]		
Niben101Scf00853g06001.1	sp|Q9M2W8|Y3990_ARATH	*-*-	BTB/POZ domain-containing protein	IPR027356 (NPH3 domain)	
Niben101Scf11512g00003.1			Unknown protein		
Niben101Scf19949g00004.1	gb|KEH39907.1|	***-	Smr (small MutS-related) domain protein [Medicago truncatula]		
Niben101Scf07035g04006.1	sp|Q8BP31|RN122_MOUSE	--*-	RING finger protein 122	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04626g00009.1	sp|Q9SGH6|DOX1_ARATH	***-	Alpha-dioxygenase 1	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf18000g00034.1	sp|Q833Y9|PURL_ENTFA	--*-	Phosphoribosylformylglycinamidine synthase subunit PurL		
Niben101Scf00872g04001.1	AT3G46350.1	***-	Leucine-rich repeat protein kinase family protein LENGTH=871	IPR001611 (Leucine-rich repeat), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0005515 (protein binding)
Niben101Scf02487g02010.1	gb|AIU49564.1|	***-	iron-sulfur cluster biosynthesis family protein, partial [Theobroma cacao]		
Niben101Scf07797g00005.1			Unknown protein		
Niben101Scf01584g01003.1	AT2G44260.2	***-	Plant protein of unknown function (DUF946) LENGTH=583	IPR009291 (Vacuolar protein sorting-associated protein 62)	
Niben101Scf05514g00006.1	AT2G22620.1	***-	Rhamnogalacturonate lyase family protein LENGTH=677	IPR008979 (Galactose-binding domain-like), IPR010325 (Rhamnogalacturonate lyase), IPR011013 (Galactose mutarotase-like domain), IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf03226g04030.1	sp|Q41396|VATE_SPIOL	****	V-type proton ATPase subunit E	IPR002842 (ATPase, V1/A1 complex, subunit E)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf06105g03005.1			Unknown protein		
Niben101Scf03595g01008.1	sp|O04659|PP398_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02289g10018.1	gb|ABF95053.1|	***-	expressed protein [Oryza sativa Japonica Group] gb|EEE58722.1| hypothetical protein OsJ_10184 [Oryza sativa Japonica Group]		
Niben101Ctg13446g00002.1	emb|CDY19004.1|	*-*-	BnaC01g20640D [Brassica napus]		
Niben101Scf04109g02001.1	AT4G01440.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=365	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01230g04008.1	sp|Q94C27|FB84_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08015g08006.1	AT2G23840.1	****	HNH endonuclease LENGTH=284	IPR003615 (HNH nuclease)	GO:0003676 (nucleic acid binding), GO:0004519 (endonuclease activity)
Niben101Scf01018g08001.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02738g07004.1	sp|Q8L6J5|RPO1B_TOBAC	****	DNA-directed RNA polymerase 1B, mitochondrial	IPR002092 (DNA-directed RNA polymerase, phage-type), IPR024075 (DNA-directed RNA polymerase, helix hairpin domain), IPR029262 (DNA-directed RNA polymerase N-terminal domain)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf03619g03002.1	gb|KEH17052.1|	*-*-	F-box/RNI/FBD-like domain protein [Medicago truncatula]		
Niben101Scf04504g02022.1			Unknown protein		
Niben101Ctg14963g00002.1	sp|P41101|RL27_SOLTU	***-	60S ribosomal protein L27	IPR001141 (Ribosomal protein L27e), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00472g07014.1	sp|Q3T0A0|ABHD1_BOVIN	*-*-	Abhydrolase domain-containing protein 1	IPR012020 (AB-hydrolase YheT, putative), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07926g09002.1	AT5G11000.1	***-	Plant protein of unknown function (DUF868) LENGTH=389	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf04574g02009.1	gb|AET03373.2|	***-	isochorismatase hydrolase family protein [Medicago truncatula]	IPR000868 (Isochorismatase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf06535g03005.1	sp|Q9FGY1|BXL1_ARATH	*-*-	Beta-D-xylosidase 1	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026891 (Fibronectin type III-like domain), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07102g01007.1	sp|Q8BHL8|PSMF1_MOUSE	--*-	Proteasome inhibitor PI31 subunit	IPR021625 (Fbxo7/PI31 domain)	
Niben101Scf09140g01009.1	AT3G11890.2	*-*-	Sterile alpha motif (SAM) domain-containing protein LENGTH=527	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf02073g07003.1	sp|Q94A18|AB29G_ARATH	*-*-	ABC transporter G family member 29	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01494g01009.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf04103g07019.1	sp|P62191|PRS4_HUMAN	***-	26S protease regulatory subunit 4	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf01671g06023.1	ref|NP_001042782.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf27265g00006.1	gb|ADN32811.1|	***-	sieve element occlusion b [Solanum phureja]	IPR027942 (Sieve element occlusion, N-terminal), IPR027944 (Sieve element occlusion, C-terminal)	
Niben101Scf02296g00017.1	sp|Q9LK24|FB327_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017900 (4Fe-4S ferredoxin, iron-sulphur binding, conserved site)	GO:0005515 (protein binding)
Niben101Scf04860g02002.1			Unknown protein		
Niben101Scf02249g01015.1	sp|Q05187|TGMH_TACTR	--*-	Hemocyte protein-glutamine gamma-glutamyltransferase		
Niben101Scf01233g00001.1	sp|Q2JL77|RL36_SYNJB	*-*-	50S ribosomal protein L36	IPR000473 (Ribosomal protein L36)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03398g04003.1	AT3G26560.1	*-**	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001650 (Helicase, C-terminal), IPR002867 (Zinc finger, C6HC-type), IPR004087 (K Homology domain), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004386 (helicase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008026 (ATP-dependent helicase activity), GO:0008270 (zinc ion binding)
Niben101Scf12881g00009.1	AT3G10340.1	****	phenylalanine ammonia-lyase 4 LENGTH=707	IPR001106 (Aromatic amino acid lyase), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0006559 (L-phenylalanine catabolic process), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf02857g04002.1	AT2G34650.1	****	Protein kinase superfamily protein LENGTH=438	IPR011009 (Protein kinase-like domain), IPR011993 (Pleckstrin homology-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05151g00013.1	AT2G44800.1	*-*-	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=357	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf00338g08018.1	sp|Q42656|AGAL_COFAR	***-	Alpha-galactosidase	IPR000111 (Glycoside hydrolase, clan GH-D), IPR013780 (Glycosyl hydrolase, family 13, all-beta)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf16530g00018.1	gb|AII48140.1|	--*-	high light inducible protein [Synechococcus sp. KORDI-52]	IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf02853g05015.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02180g00024.1	gb|ABA99487.1|	--*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf10908g02001.1	sp|Q5L0J9|RRF_GEOKA	***-	Ribosome-recycling factor	IPR002661 (Ribosome recycling factor), IPR023584 (Ribosome recycling factor domain)	GO:0006412 (translation)
Niben101Scf00592g03010.1	sp|Q8LC79|GAT18_ARATH	****	GATA transcription factor 18	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07586g00012.1	AT2G38620.2	****	cyclin-dependent kinase B1;2 LENGTH=311	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00856g02002.1	ref|XP_003628195.1|	****	WD repeat-containing protein [Medicago truncatula] gb|AET02671.1| retinoblastoma-binding-like protein [Medicago truncatula]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf07585g00009.1	sp|P55217|METB_ARATH	*-*-	Cystathionine gamma-synthase, chloroplastic		
Niben101Scf07907g00033.1	sp|Q09442|SF3B4_CAEEL	*-*-	Splicing factor 3B subunit 4	IPR006529 (U2 snRNP auxilliary factor, large subunit, splicing factor), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0006397 (mRNA processing)
Niben101Scf20596g00006.1	AT5G44785.2	****	organellar single-stranded DNA binding protein 3 LENGTH=442	IPR000424 (Primosome PriB/single-strand DNA-binding)	GO:0003697 (single-stranded DNA binding)
Niben101Scf10409g02002.1	sp|Q84WS8|U1125_ARATH	--*-	U11/U12 small nuclear ribonucleoprotein 25 kDa protein	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf00214g07005.1	ref|XP_002525617.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF36735.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf12422g01009.1	sp|Q926V6|RSMG_LISIN	****	Ribosomal RNA small subunit methyltransferase G	IPR003682 (rRNA small subunit methyltransferase G), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005737 (cytoplasm), GO:0006364 (rRNA processing), GO:0008649 (rRNA methyltransferase activity)
Niben101Scf07841g00009.1	emb|CDX69444.1|	***-	BnaA10g17930D [Brassica napus]		
Niben101Scf02105g01016.1	AT4G15050.1	***-	Protein of Unknown Function (DUF239) LENGTH=396	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf05439g02015.1	emb|CDY65732.1|	*-*-	BnaCnng48510D [Brassica napus]		
Niben101Scf08024g00002.1	sp|Q42564|APX3_ARATH	--*-	L-ascorbate peroxidase 3, peroxisomal		
Niben101Scf01001g00002.1	sp|Q8W246|ZIP7_ARATH	****	Zinc transporter 7	IPR003689 (Zinc/iron permease)	GO:0005385 (zinc ion transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport), GO:0071577 (zinc ion transmembrane transport)
Niben101Scf03932g01001.1	gb|KEH21427.1|	***-	jasmonate zim-domain protein [Medicago truncatula]		
Niben101Scf07742g01018.1	AT1G26761.1	***-	Arabinanase/levansucrase/invertase LENGTH=444	IPR007184 (Mannoside phosphorylase), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	
Niben101Scf02467g00006.1			Unknown protein		
Niben101Scf01394g01007.1	tpg|DAA39002.1|	*-*-	TPA: hypothetical protein ZEAMMB73_375277 [Zea mays]		
Niben101Scf02111g16018.1	sp|O93988|ACL1_SORMK	****	ATP-citrate synthase subunit 1	IPR002020 (Citrate synthase-like), IPR005810 (Succinyl-CoA ligase, alpha subunit), IPR016040 (NAD(P)-binding domain), IPR016102 (Succinyl-CoA synthetase-like)	GO:0003824 (catalytic activity), GO:0003878 (ATP citrate synthase activity), GO:0004775 (succinate-CoA ligase (ADP-forming) activity), GO:0008152 (metabolic process), GO:0044262 (cellular carbohydrate metabolic process), GO:0046912 (transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer)
Niben101Scf00297g00020.1	gb|KEH36104.1|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf11480g02005.1	AT5G17900.1	***-	microfibrillar-associated protein-related LENGTH=435	IPR009730 (Micro-fibrillar-associated protein 1, C-terminal)	
Niben101Scf04776g01027.1	sp|Q9LUG9|MD33A_ARATH	*-*-	Mediator of RNA polymerase II transcription subunit 33A		
Niben101Scf08351g01002.1	sp|Q99816|TS101_HUMAN	*-*-	Tumor susceptibility gene 101 protein	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR017916 (Steadiness box)	GO:0006464 (cellular protein modification process), GO:0015031 (protein transport)
Niben101Scf03393g00010.1	sp|Q9LUG9|MD33A_ARATH	***-	Mediator of RNA polymerase II transcription subunit 33A		
Niben101Scf01190g04003.1	sp|Q6DJ87|CC90B_XENTR	***-	Coiled-coil domain-containing protein 90B, mitochondrial	IPR024461 (Protein of unknown function DUF1640)	
Niben101Scf03189g02011.1	sp|Q8CES0|NAA30_MOUSE	--**	N-alpha-acetyltransferase 30	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf06516g04018.1	sp|Q6ZKC0|14333_ORYSJ	***-	14-3-3-like protein GF14-C	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf02792g03030.1	sp|B9M644|TRUD_GEODF	*-**	tRNA pseudouridine synthase D	IPR001656 (Pseudouridine synthase, TruD), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf01991g00010.1	sp|Q754B9|ERG3_ASHGO	***-	C-5 sterol desaturase	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf16148g01015.1	sp|O88480|CABIN_RAT	*-**	Calcineurin-binding protein cabin-1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02891g04004.1	sp|Q9ZVC9|FRS3_ARATH	***-	Protein FAR1-RELATED SEQUENCE 3	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf00037g01004.1	sp|A4IF93|TBCC1_BOVIN	*-*-	TBCC domain-containing protein 1	IPR016098 (Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal), IPR017901 (C-CAP/cofactor C-like domain)	GO:0000902 (cell morphogenesis)
Niben101Scf00031g02001.1	sp|Q9FLV4|Y5248_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain)	
Niben101Scf03341g03003.1	sp|E9PTG8|STK10_RAT	*-**	Serine/threonine-protein kinase 10	IPR011009 (Protein kinase-like domain), IPR016024 (Armadillo-type fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005488 (binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06189g04003.1	AT4G11400.1	*-*-	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=573	IPR000949 (ELM2 domain)	
Niben101Scf00571g10002.1	AT5G19760.1	***-	Mitochondrial substrate carrier family protein LENGTH=298	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf11493g00006.1	AT2G48140.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=200	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf13823g00001.1	ref|XP_007016848.1|	--*-	Heavy metal transport/detoxification superfamily protein, putative [Theobroma cacao] gb|EOY34467.1| Heavy metal transport/detoxification superfamily protein, putative [Theobroma cacao]		
Niben101Scf03250g01004.1	AT5G13210.1	***-	Uncharacterised conserved protein UCP015417, vWA LENGTH=673	IPR024553 (Domain of unknown function DUF2828)	
Niben101Scf05811g06018.1	sp|Q9X248|FABG_THEMA	****	3-oxoacyl-[acyl-carrier-protein] reductase FabG	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf20828g00001.1	AT3G26935.1	****	DHHC-type zinc finger family protein LENGTH=443	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf01920g00016.1	sp|A7QEU4|PER5_VITVI	****	Peroxidase 5	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf16205g00004.1			Unknown protein		
Niben101Scf02517g10004.1	sp|Q09263|EFR3_CAEEL	***-	Protein EFR3 homolog	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04838g01003.1			Unknown protein		
Niben101Scf08007g02013.1	AT3G14900.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 17135 Blast hits to 10204 proteins in 644 species: Archae - 47; Bacteria - 1684; Metazoa - 5536; Fungi - 2506; Plants - 1043; Viruses - 361; Other Eukaryotes - 5958 (source: NCBI BLink). LENGTH=611		
Niben101Scf00043g03002.1	sp|A0RNU4|HEMH_CAMFF	--*-	Ferrochelatase		
Niben101Scf00270g05012.1	sp|Q5XVJ4|FAN1_ARATH	***-	Fanconi-associated nuclease 1 homolog	IPR014883 (VRR-NUC domain)	GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf08918g02012.1			Unknown protein		
Niben101Scf02819g02008.1	sp|Q9LND8|ADSL2_ARATH	***-	Delta-9 desaturase-like 2 protein	IPR015876 (Fatty acid desaturase, type 1, core)	GO:0006629 (lipid metabolic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0055114 (oxidation-reduction process)
Niben101Scf12045g06025.1	sp|Q02243|WIN_SOYBN	***-	Wound-induced protein	IPR009009 (RlpA-like double-psi beta-barrel domain)	GO:0042742 (defense response to bacterium), GO:0050832 (defense response to fungus)
Niben101Scf03335g01011.1	sp|Q9LE73|NUDT4_ARATH	****	Nudix hydrolase 4	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf08590g01003.1			Unknown protein		
Niben101Scf04872g00004.1	sp|D4GYV5|SUFS_HALVD	***-	Cysteine desulfurase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf04231g02010.1	sp|Q8L5A7|SOT15_ARATH	*-**	Cytosolic sulfotransferase 15	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf01483g01004.1	sp|P41751|ALDH_ASPNG	*-*-	Aldehyde dehydrogenase	IPR015657 (Aminobutyraldehyde dehydrogenase), IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03446g12007.1	sp|B7M3W3|YBAB_ECO8A	-**-	Nucleoid-associated protein YbaB	IPR004401 (Nucleoid-associated protein YbaB)	
Niben101Scf13254g00003.1	gb|KCZ67791.1|	*-*-	alpha/beta hydrolase family protein [Clostridium sporogenes]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf09706g00008.1	gb|ABA95184.1|	*-*-	Lipase family protein [Oryza sativa Japonica Group]	IPR005592 (Mono-/di-acylglycerol lipase, N-terminal)	GO:0016042 (lipid catabolic process)
Niben101Scf02494g07007.1	AT1G02000.1	****	UDP-D-glucuronate 4-epimerase 2 LENGTH=434	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf04418g12001.1	sp|Q54NK8|GPN3_DICDI	***-	GPN-loop GTPase 3	IPR004130 (GPN-loop GTPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00128g02002.1	emb|CDX85195.1|	*-*-	BnaC07g25060D [Brassica napus]		
Niben101Scf00231g02001.1	AT1G67820.1	****	Protein phosphatase 2C family protein LENGTH=445	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf06954g00015.1	sp|P53471|ACT2_SCHMA	***-	Actin-2	IPR004000 (Actin family)	
Niben101Scf02860g03001.1	sp|Q8S932|ACCO_DIOKA	--*-	1-aminocyclopropane-1-carboxylate oxidase	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf06996g02038.1	gb|ACG39131.1|	****	transferase, transferring glycosyl groups [Zea mays]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf01205g04002.1	AT1G75620.1	***-	glyoxal oxidase-related protein LENGTH=547	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR014756 (Immunoglobulin E-set), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf09365g00027.1	sp|Q9STS6|LBD27_ARATH	*-*-	LOB domain-containing protein 27	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf08137g01038.1	gb|AES64131.2|	***-	nucleoporin protein Ndc1-Nup [Medicago truncatula]	IPR019049 (Nucleoporin protein Ndc1-Nup)	
Niben101Scf35862g00001.1	AT3G19895.1	***-	RING/U-box superfamily protein LENGTH=554	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf01323g03009.1	AT4G08455.1	***-	BTB/POZ domain-containing protein LENGTH=243	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Ctg12548g00001.1	AT5G08250.1	*-*-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03276g00009.1	ref|XP_003636799.1|	****	2-aminoethanethiol dioxygenase [Medicago truncatula]	IPR012864 (Cysteamine dioxygenase), IPR014710 (RmlC-like jelly roll fold)	GO:0047800 (cysteamine dioxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06301g01003.1	sp|O65390|APA1_ARATH	****	Aspartic proteinase A1	IPR001461 (Aspartic peptidase), IPR011001 (Saposin-like), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis), GO:0006629 (lipid metabolic process)
Niben101Ctg11864g00002.1	AT3G05960.1	****	sugar transporter 6 LENGTH=507	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf07829g03025.1	emb|CDX69769.1|	***-	BnaA10g21180D [Brassica napus]		
Niben101Scf00497g07005.1	AT1G01630.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=255	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf07817g02002.1	sp|Q8NHV1|GIMA7_HUMAN	***-	GTPase IMAP family member 7	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf06779g03005.1	sp|Q9SFF9|GL17_ARATH	*-*-	Germin-like protein subfamily 1 member 7	IPR001214 (SET domain), IPR001929 (Germin)	GO:0005515 (protein binding), GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf02992g01001.1	sp|Q9XJ66|MAD22_ORYSJ	****	MADS-box transcription factor 22	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf08811g00005.1	sp|Q8H125|SCL5_ARATH	***-	Scarecrow-like protein 5	IPR005202 (Transcription factor GRAS), IPR030018 (Scarecrow-like protein 5/chitin-inducible gibberellin-responsive protein 2)	
Niben101Scf02063g02012.1	AT4G14420.1	***-	HR-like lesion-inducing protein-related LENGTH=158	IPR008637 (HR-like lesion-inducer)	
Niben101Scf37957g00001.1	sp|O49436|PP327_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf10881g00031.1	sp|P15688|NU2M_BETVU	--*-	NADH-ubiquinone oxidoreductase chain 2		
Niben101Scf01460g04019.1	sp|A3MYM7|NQRF_ACTP2	*-**	Na(+)-translocating NADH-quinone reductase subunit F	IPR001221 (Phenol hydroxylase reductase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01432g07006.1	sp|G3X9R7|RN148_MOUSE	*-*-	RING finger protein 148	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04675g09027.1	AT4G32950.1	***-	Protein phosphatase 2C family protein LENGTH=326	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf00851g04003.1	emb|CDY47923.1|	***-	BnaAnng09550D [Brassica napus]		
Niben101Scf04820g00002.1	AT3G55880.2	*-*-	Alpha/beta hydrolase related protein LENGTH=215	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05226g03006.1	AT5G03490.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=465	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01553g02005.1	sp|P19515|LIP_RHIMI	*-*-	Lipase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf02247g00017.1	AT1G48540.1	*-*-	Outer arm dynein light chain 1 protein LENGTH=1063		
Niben101Scf01143g01001.1	sp|C0MAR6|RECA_STRE4	--*-	Protein RecA		
Niben101Scf03048g01040.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00268g02013.1	sp|Q8R2P1|KLH25_MOUSE	*-*-	Kelch-like protein 25	IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf04722g00009.1	sp|P04992|RBL_PETHY	*-**	Ribulose bisphosphate carboxylase large chain	IPR017443 (Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf00312g04003.1	AT1G68825.1	***-	ROTUNDIFOLIA like 15 LENGTH=46	IPR012552 (DVL)	
Niben101Scf06545g01005.1	AT2G02880.1	***-	mucin-related LENGTH=314		
Niben101Scf00136g00002.1	AT5G15240.1	***-	Transmembrane amino acid transporter family protein LENGTH=423	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf05193g01008.1	ref|XP_003625749.1|	*-*-	Pre-mRNA cleavage complex 2 protein Pcf11 [Medicago truncatula]	IPR006569 (CID domain), IPR007087 (Zinc finger, C2H2), IPR008942 (ENTH/VHS)	GO:0046872 (metal ion binding)
Niben101Scf02854g09012.1	AT1G66330.1	***-	senescence-associated family protein LENGTH=417	IPR011989 (Armadillo-like helical)	
Niben101Scf11491g01004.1	sp|Q8GWK7|BEE3_ARATH	***-	Transcription factor BEE 3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf08590g02004.1	sp|Q2UTN6|SET2_ASPOR	--*-	Histone-lysine N-methyltransferase, H3 lysine-36 specific	IPR001214 (SET domain)	GO:0005515 (protein binding)
Niben101Scf01341g02007.1	sp|Q1C4D9|DPO4_YERPA	*-**	DNA polymerase IV	IPR001126 (DNA-repair protein, UmuC-like), IPR001357 (BRCT domain)	GO:0003684 (damaged DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006281 (DNA repair)
Niben101Scf02738g02006.1	gb|ABM66381.1|	-**-	pollen coat-like protein [Camellia sinensis]		
Niben101Scf03683g03008.1	AT2G26210.1	***-	Ankyrin repeat family protein LENGTH=190	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf02606g04004.1	sp|Q9XI05|PSB3A_ARATH	****	Proteasome subunit beta type-3-A	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf00268g02012.1	AT2G05310.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=125		
Niben101Scf00391g04005.1	sp|Q9LJU0|CBL10_ARATH	***-	COBRA-like protein 10	IPR006918 (COBRA, plant), IPR012291 (Cellulose-binding family II/chitobiase, carbohydrate-binding domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0030247 (polysaccharide binding), GO:0031225 (anchored component of membrane)
Niben101Ctg07884g00002.1			Unknown protein		
Niben101Scf05226g03005.1	AT5G03490.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=465	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03068g00003.1	sp|Q1IS59|NUOD1_KORVE	*-*-	NADH-quinone oxidoreductase subunit D 1	IPR029014 (NiFe hydrogenase-like)	
Niben101Scf04001g02007.1			Unknown protein		
Niben101Scf02160g00011.1			Unknown protein		
Niben101Scf00635g05011.1	sp|O04887|PME2_CITSI	*-**	Pectinesterase 2	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf11727g00007.1	sp|B2VDG5|RLMI_ERWT9	--**	Ribosomal RNA large subunit methyltransferase I	IPR004398 (RNA methyltransferase, RsmD), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0031167 (rRNA methylation)
Niben101Scf05939g03006.1	sp|Q9FQ27|TPSGB_SOLHA	*-**	(E,E)-germacrene B synthase	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf05216g06001.1	AT1G55360.1	***-	Protein of Unknown Function (DUF239) LENGTH=422	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf02761g00001.1			Unknown protein		
Niben101Scf06123g05006.1	emb|CDX80857.1|	***-	BnaC03g01110D [Brassica napus]	IPR007608 (Senescence regulator S40)	
Niben101Scf06819g03002.1	gb|KEH23773.1|	*-*-	F-box protein SKIP2 [Medicago truncatula]		
Niben101Scf04260g03005.1	sp|O04722|SUT21_ARATH	--*-	Sulfate transporter 2.1		
Niben101Scf15095g00005.1	sp|P13934|LEA76_BRANA	--*-	Late embryogenesis abundant protein 76		
Niben101Scf00419g11021.1	sp|Q6QNL9|KC1_EIMTE	--*-	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0005524 (ATP binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09151g02005.1	AT4G21720.1	***-	unknown protein; Has 2692 Blast hits to 975 proteins in 186 species: Archae - 4; Bacteria - 460; Metazoa - 658; Fungi - 93; Plants - 1089; Viruses - 100; Other Eukaryotes - 288 (source: NCBI BLink). LENGTH=139		
Niben101Scf08876g00001.1	AT5G17680.1	*-*-	disease resistance protein (TIR-NBS-LRR class), putative LENGTH=1294	IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0043531 (ADP binding)
Niben101Scf00986g02007.1	sp|P0C8N7|UCRI_SYNEL	*-**	Cytochrome b6-f complex iron-sulfur subunit	IPR014349 (Rieske iron-sulphur protein)	GO:0008121 (ubiquinol-cytochrome-c reductase activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0016679 (oxidoreductase activity, acting on diphenols and related substances as donors), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00497g07006.1	sp|Q3AWL7|UCRI_SYNS9	*-**	Cytochrome b6-f complex iron-sulfur subunit	IPR014349 (Rieske iron-sulphur protein)	GO:0008121 (ubiquinol-cytochrome-c reductase activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0016679 (oxidoreductase activity, acting on diphenols and related substances as donors), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf21699g00003.1	emb|CDY51861.1|	*-*-	BnaC03g77130D [Brassica napus]		
Niben101Scf02043g04014.1	AT5G39950.1	***-	thioredoxin 2 LENGTH=133	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf07584g01001.1	emb|CAD40938.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf00730g00034.1	sp|Q9LSS5|ICR3_ARATH	***-	Interactor of constitutive active ROPs 3		
Niben101Scf14688g00018.1	AT5G25360.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=169	IPR025124 (Domain of unknown function DUF4050)	
Niben101Scf07914g01005.1			Unknown protein		
Niben101Scf05078g02005.1	AT5G50760.1	***-	SAUR-like auxin-responsive protein family LENGTH=183	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf07215g00011.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf08804g01011.1	sp|A9BD51|ACP_PROM4	***-	Acyl carrier protein	IPR003231 (Acyl carrier protein (ACP)), IPR009081 (Acyl carrier protein-like)	GO:0006633 (fatty acid biosynthetic process)
Niben101Scf02344g01013.1	gb|AFK12459.1|	*-*-	COG5125-like protein, partial [Helianthus annuus]	IPR014854 (Non-structural maintenance of chromosome element 4, C-terminal), IPR027786 (Nse4/EID family)	GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0030915 (Smc5-Smc6 complex)
Niben101Scf01214g01003.1	AT2G27230.1	*-*-	transcription factor-related LENGTH=650	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf01189g03002.1	gb|ADN43429.1|	*-*-	pathogenesis-related protein 1 [Vitis hybrid cultivar]	IPR014044 (CAP domain)	
Niben101Scf35293g00002.1	sp|Q09G55|RPOC1_PLAOC	*-**	DNA-directed RNA polymerase subunit beta'	IPR007080 (RNA polymerase Rpb1, domain 1)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf01785g10009.1	AT4G16165.1	***-	Carbohydrate-binding X8 domain superfamily protein LENGTH=111	IPR012946 (X8 domain)	
Niben101Scf03479g05013.1	sp|P52855|RLA1_MAIZE	***-	60S acidic ribosomal protein P1	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf04610g03017.1	sp|Q1LVC2|JARD2_DANRE	--*-	Protein Jumonji		
Niben101Scf08127g00005.1	AT2G03780.1	***-	Translin family protein LENGTH=287	IPR002848 (Translin)	GO:0043565 (sequence-specific DNA binding)
Niben101Scf02547g00005.1	sp|Q8VH51|RBM39_MOUSE	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07510g00016.1	sp|P27489|CB23_SOLLC	***-	Chlorophyll a-b binding protein 13, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf33666g00002.1	sp|A7Y3C4|PSBD_IPOPU	****	Photosystem II D2 protein	IPR000484 (Photosynthetic reaction centre, L/M), IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0009772 (photosynthetic electron transport in photosystem II), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf01993g08022.1	sp|O23693|MLO4_ARATH	*-*-	MLO-like protein 4	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf23814g00017.1	sp|P83326|PMEI_ACTDE	****	Pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf09882g00006.1	emb|CDX87918.1|	***-	BnaC06g09800D [Brassica napus]		
Niben101Scf00461g01007.1	sp|Q9XI23|BOR4_ARATH	*-*-	Boron transporter 4	IPR003020 (Bicarbonate transporter, eukaryotic)	GO:0005452 (inorganic anion exchanger activity), GO:0006820 (anion transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf01151g00004.1	sp|Q42842|NLT43_HORVU	****	Non-specific lipid-transfer protein 4.3	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf00885g14015.1	AT1G30320.1	***-	Remorin family protein LENGTH=509	IPR005516 (Remorin, C-terminal)	
Niben101Scf01812g04009.1	sp|P14232|TGA1A_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1A	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02590g00001.1	sp|Q11180|WHT1_CAEEL	****	ABC transporter ATP-binding protein/permease wht-1	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf04134g01014.1	AT3G44510.2	***-	alpha/beta-Hydrolases superfamily protein LENGTH=325	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03412g01007.1	sp|Q89AF9|DEAD_BUCBP	****	ATP-dependent RNA helicase DeaD	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf00245g02010.1	sp|Q9FLJ2|NC100_ARATH	***-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10248g00006.1	AT3G58630.1	*-*-	sequence-specific DNA binding transcription factors LENGTH=321		
Niben101Scf00923g01005.1	gb|KEH36771.1|	--**	heavy metal transport/detoxification domain protein [Medicago truncatula]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf07741g04022.1	sp|Q5ZKD9|KLH20_CHICK	*-*-	Kelch-like protein 20	IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf02847g00002.1	AT1G34760.1	***-	general regulatory factor 11 LENGTH=255	IPR000308 (14-3-3 protein), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf03969g06010.1	gb|KEH24918.1|	*-*-	senescence-associated protein [Medicago truncatula]		
Niben101Scf02210g07010.1			Unknown protein		
Niben101Scf10595g01012.1	sp|Q9C5X8|MOCOS_ARATH	*-*-	Molybdenum cofactor sulfurase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02735g00010.1	AT1G14270.1	***-	CAAX amino terminal protease family protein LENGTH=353	IPR003675 (CAAX amino terminal protease)	GO:0016020 (membrane)
Niben101Scf06245g01016.1	sp|Q6MAA3|MDH_PARUW	****	Malate dehydrogenase	IPR010945 (Malate dehydrogenase, type 2)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00109g04011.1	AT5G13990.1	****	exocyst subunit exo70 family protein C2 LENGTH=695	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf01866g03006.1			Unknown protein		
Niben101Scf12210g07001.1	sp|Q40478|ERF5_TOBAC	****	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01818g04007.1	sp|Q04127|PSBP3_TOBAC	--**	Oxygen-evolving enhancer protein 2-3, chloroplastic	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf14294g00004.1	sp|Q9AVJ9.1|MXMT1_COFAR	****	RecName: Full=Monomethylxanthine methyltransferase 1; Short=CaMXMT1; AltName: Full=Theobromine synthase 1 [Coffea arabica] N-methyltransferase [Coffea arabica] N-methyltransferase [Coffea canephora] dbj|BAB39216.1| 7-methylxanthine N-methyltransferase [Coffea arabica] gb|AAQ16155.1| putative caffeine synthase [Coffea canephora] gb|ADR30039.1| 7-methylxanthine N-methyl transferase [Coffea canephora] gb|AFV60439.1| 7-methylxanthine methyltransferase 1 [Coffea arabica] gb|AFV60447.1| 7-methylxanthine methyltransferase 1 [Coffea arabica]	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf06375g05001.1	AT1G36160.1	****	acetyl-CoA carboxylase 1 LENGTH=2254	IPR000089 (Biotin/lipoyl attachment), IPR011761 (ATP-grasp fold), IPR011764 (Biotin carboxylation domain), IPR013537 (Acetyl-CoA carboxylase, central domain), IPR016185 (Pre-ATP-grasp domain), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0003989 (acetyl-CoA carboxylase activity), GO:0004075 (biotin carboxylase activity), GO:0005524 (ATP binding), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016874 (ligase activity), GO:0046872 (metal ion binding)
Niben101Scf00496g00002.1	AT5G02820.1	****	Spo11/DNA topoisomerase VI, subunit A protein LENGTH=427	IPR002815 (Spo11/DNA topoisomerase VI subunit A)	GO:0000737 (DNA catabolic process, endonucleolytic), GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0006259 (DNA metabolic process), GO:0006265 (DNA topological change)
Niben101Scf02346g02004.1	sp|Q9CA23|UFM1_ARATH	***-	Ubiquitin-fold modifier 1	IPR005375 (Ubiquitin-fold modifier 1), IPR029071 (Ubiquitin-related domain)	
Niben101Scf02860g01014.1	AT1G11545.1	****	xyloglucan endotransglucosylase/hydrolase 8 LENGTH=305	IPR008264 (Beta-glucanase), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf00132g01019.1	AT4G10925.1	***-	Nuclear transport factor 2 (NTF2) family protein LENGTH=231	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf03595g17004.1	ref|NP_175433.2|	*-*-	P-loop containing nucle [Arabidopsis thaliana]		
Niben101Scf19533g00003.1	sp|Q5BIY5|RN145_XENLA	*-*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01054g00005.1			Unknown protein		
Niben101Scf09230g00005.1	sp|P40973|PLY_LILLO	--**	Pectate lyase	IPR007524 (Pectate lyase, N-terminal)	GO:0030570 (pectate lyase activity)
Niben101Scf03321g05016.1	sp|Q6LL68|BGAL_PHOPR	****	Beta-galactosidase	IPR006101 (Glycoside hydrolase, family 2), IPR011013 (Galactose mutarotase-like domain), IPR013812 (Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain), IPR017853 (Glycoside hydrolase superfamily), IPR023230 (Glycoside hydrolase, family 2, conserved site), IPR023232 (Glycoside hydrolase, family 2, active site)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004565 (beta-galactosidase activity), GO:0005975 (carbohydrate metabolic process), GO:0009341 (beta-galactosidase complex), GO:0030246 (carbohydrate binding)
Niben101Scf04832g00001.1	emb|CDX87797.1|	***-	BnaC02g31520D [Brassica napus]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf03412g05008.1	emb|CDX69084.1|	*-*-	BnaC01g03690D [Brassica napus]		
Niben101Scf02648g04009.1	AT3G10600.1	****	cationic amino acid transporter 7 LENGTH=584	IPR002293 (Amino acid/polyamine transporter I), IPR004841 (Amino acid permease/ SLC12A domain), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0006810 (transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03426g01007.1	sp|Q54ER7|TCPH_DICDI	*-**	T-complex protein 1 subunit eta	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf07788g01010.1	emb|CDY20043.1|	***-	BnaA09g02080D [Brassica napus]		
Niben101Scf34601g00001.1	emb|CED79808.1|	*-*-	Ycf1 protein (chloroplast) [Hesperelaea palmeri]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf03357g00038.1	sp|Q9CWK3|CD2B2_MOUSE	*-*-	CD2 antigen cytoplasmic tail-binding protein 2		
Niben101Scf06525g01017.1	AT1G74120.1	****	Mitochondrial transcription termination factor family protein LENGTH=445	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06435g02008.1			Unknown protein		
Niben101Scf10920g00003.1	sp|Q9Y6U7|RN215_HUMAN	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05247g02004.1	sp|Q9FLN5|VA0E1_ARATH	****	V-type proton ATPase subunit e1	IPR008389 (ATPase, V0 complex, subunit e1/e2)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf03634g09019.1	dbj|BAA95789.1|	*-*-	KED [Nicotiana tabacum]		
Niben101Scf05962g03001.1	ref|NP_192418.1|	--*-	In [Arabidopsis thaliana]		
Niben101Ctg10614g00004.1	sp|Q6CRQ9|ISU1_KLULA	*-**	Iron sulfur cluster assembly protein 1, mitochondrial	IPR002871 (NIF system FeS cluster assembly, NifU, N-terminal)	GO:0005506 (iron ion binding), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf01025g07017.1	sp|Q40554|EIF3A_TOBAC	****	Eukaryotic translation initiation factor 3 subunit A	IPR000717 (Proteasome component (PCI) domain), IPR027512 (Eukaryotic translation initiation factor 3 subunit A)	GO:0005515 (protein binding), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf06968g00023.1	AT4G16745.2	***-	Exostosin family protein LENGTH=589	IPR004263 (Exostosin-like)	
Niben101Scf02957g00007.1	sp|Q0WNN7|PP176_ARATH	*-*-	Pentatricopeptide repeat-containing protein At2g30100, chloroplastic		
Niben101Scf02929g05098.1	ref|YP_006291803.1|	*-*-	orf34 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81172.1| orf34 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf10476g01004.1	ref|XP_007052413.1|	***-	Chloroplast, plasma membrane, plastid, chloroplast envelope, putative [Theobroma cacao] gb|EOX96570.1| Chloroplast, plasma membrane, plastid, chloroplast envelope, putative [Theobroma cacao]	IPR022244 (Protein of unknown function DUF3769)	
Niben101Scf01478g00010.1	sp|G3X9R7|RN148_MOUSE	*-*-	RING finger protein 148	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02620g00022.1	sp|Q9STF9|PP266_ARATH	***-	Pentatricopeptide repeat-containing protein		
Niben101Scf08088g04018.1	sp|P27492|CB21_TOBAC	***-	Chlorophyll a-b binding protein 16, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf08415g01005.1	AT5G23850.1	*-*-	Arabidopsis thaliana protein of unknown function (DUF821) LENGTH=542	IPR006598 (Lipopolysaccharide-modifying protein)	
Niben101Scf04627g05007.1	sp|Q39173|P2_ARATH	--*-	NADP-dependent alkenal double bond reductase P2	IPR011032 (GroES (chaperonin 10)-like)	
Niben101Scf02870g00013.1	sp|O95243|MBD4_HUMAN	*-*-	Methyl-CpG-binding domain protein 4	IPR011257 (DNA glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair)
Niben101Scf02139g03002.1	sp|B5YE95|PGK_DICT6	****	Phosphoglycerate kinase	IPR001576 (Phosphoglycerate kinase), IPR003358 (tRNA (guanine-N-7) methyltransferase, Trmb type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0004618 (phosphoglycerate kinase activity), GO:0006096 (glycolytic process), GO:0006400 (tRNA modification), GO:0008176 (tRNA (guanine-N7-)-methyltransferase activity)
Niben101Scf09997g00018.1	sp|Q15276|RABE1_HUMAN	--*-	Rab GTPase-binding effector protein 1		
Niben101Scf08516g02001.1	AT3G02645.1	***-	Plant protein of unknown function (DUF247) LENGTH=529	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf05654g00023.1	sp|A1E9J1|PSAA_HORVU	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf01281g10013.1	sp|Q2UVJ5|CCC1_ARATH	*-*-	Cation-chloride cotransporter 1		
Niben101Scf06856g00007.1	sp|P55034|PSMD4_ARATH	****	26S proteasome non-ATPase regulatory subunit 4 homolog	IPR002035 (von Willebrand factor, type A), IPR003903 (Ubiquitin interacting motif), IPR027040 (Proteasome subunit Rpn10)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0008540 (proteasome regulatory particle, base subcomplex)
Niben101Scf06054g00002.1	sp|Q9SSA7|GLIP5_ARATH	***-	GDSL esterase/lipase 5	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf17524g00013.1	sp|Q2U600|BCP1_ASPOR	***-	Protein bcp1	IPR025602 (BCP1 family)	
Niben101Scf07168g02010.1	sp|Q3B4E2|FOLD_PELLD	***-	Bifunctional protein FolD	IPR000672 (Tetrahydrofolate dehydrogenase/cyclohydrolase)	GO:0003824 (catalytic activity), GO:0004488 (methylenetetrahydrofolate dehydrogenase (NADP+) activity), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf05349g01023.1	sp|B0K8E8|VATA_THEP3	*-**	V-type ATP synthase alpha chain	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf10388g01004.1	ref|XP_002527723.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF34636.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00408g09015.1	sp|Q9SF78|GDL29_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00713g04001.1			Unknown protein		
Niben101Scf03444g03003.1	sp|Q9SNB7|PP264_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01232g04005.1			Unknown protein		
Niben101Scf03064g05001.1	sp|P81392|MYB06_ANTMA	*-*-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07720g00014.1	gb|ABA93516.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf01390g00001.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf13203g00006.1	sp|P85894|LTP1_MORNI	****	Non-specific lipid-transfer protein 1	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf05938g00001.1	ref|NP_001068437.1|	*-*-	product [Oryza sativa Japonica Group]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf09156g00023.1	sp|Q9Y259|CHKB_HUMAN	****	Choline/ethanolamine kinase	IPR011009 (Protein kinase-like domain), IPR026712 (Choline/Ethanolamine kinase)	GO:0016301 (kinase activity), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0046474 (glycerophospholipid biosynthetic process)
Niben101Scf07402g06007.1	gb|AAF22135.1|AF127919_1	*-*-	high mobility group protein I/Y [Brassica napus]	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR020478 (AT hook-like)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf08621g01003.1	AT1G35560.1	***-	TCP family transcription factor LENGTH=341	IPR005333 (Transcription factor, TCP)	
Niben101Scf10305g00007.1	sp|Q92618|ZN516_HUMAN	--*-	Zinc finger protein 516	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf18039g00003.1	sp|O81902|PUB8_ARATH	***-	U-box domain-containing protein 8	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf16915g02006.1	AT3G22970.1	***-	Protein of unknown function (DUF506) LENGTH=370	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf00509g00003.1	ref|NP_063977.1|	***-	orf146 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] ref|YP_004222306.1| hypothetical protein BevumaM_p071 [Beta vulgaris subsp. maritima] dbj|BAA99289.1| orf146 [Beta vulgaris subsp. vulgaris] emb|CBJ14042.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBJ17533.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBL54124.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp. maritima]		
Niben101Scf11383g00021.1	sp|Q99W51|TADA_STAAM	--*-	tRNA-specific adenosine deaminase	IPR016193 (Cytidine deaminase-like)	GO:0003824 (catalytic activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity)
Niben101Scf02828g02003.1	emb|CDX85458.1|	***-	BnaA02g03550D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf07035g04005.1	sp|Q54S04|RPB4_DICDI	--**	DNA-directed RNA polymerase II subunit rpb4	IPR005574 (RNA polymerase II, Rpb4)	GO:0000166 (nucleotide binding), GO:0003824 (catalytic activity), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0044237 (cellular metabolic process)
Niben101Scf02287g00002.1	sp|Q8NFV4|ABHDB_HUMAN	--*-	Alpha/beta hydrolase domain-containing protein 11	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00627g00003.1	sp|Q9XJ60|MAD50_ORYSJ	*-*-	MADS-box transcription factor 50	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf05372g00006.1	sp|Q9WTL2|RAB25_MOUSE	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf04562g04005.1	sp|Q99KP6|PRP19_MOUSE	*-*-	Pre-mRNA-processing factor 19	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf04290g00009.1			Unknown protein		
Niben101Scf04512g00004.1			Unknown protein		
Niben101Scf08504g04016.1	sp|Q8U0M0|RRP42_PYRFU	***-	Exosome complex component Rrp42	IPR015847 (Exoribonuclease, phosphorolytic domain 2), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027408 (PNPase/RNase PH domain)	
Niben101Scf01984g00012.1			Unknown protein		
Niben101Scf02736g06012.1	gb|AES72618.2|	***-	auxin-independent growth promoter-like protein [Medicago truncatula]	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Ctg10955g00001.1	ref|XP_007042581.1|	--*-	SWIB/MDM2 domain superfamily protein [Theobroma cacao] gb|EOX98412.1| SWIB/MDM2 domain superfamily protein [Theobroma cacao]		
Niben101Scf01146g01001.1	sp|Q8VZU9|DERL1_ARATH	***-	Derlin-1	IPR007599 (Derlin)	
Niben101Scf06280g06007.1	sp|Q9FL17|PUB40_ARATH	***-	U-box domain-containing protein 40	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf01181g03018.1			Unknown protein		
Niben101Scf02151g04015.1	AT1G69200.1	***-	fructokinase-like 2 LENGTH=616	IPR029056 (Ribokinase-like)	
Niben101Scf07792g00004.1			Unknown protein	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf02145g10010.1			Unknown protein		
Niben101Scf00176g11005.1	AT4G21750.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=762	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf08275g00005.1			Unknown protein		
Niben101Scf02455g01006.1	sp|Q2U070|DBP2_ASPOR	*-**	ATP-dependent RNA helicase dbp2	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf07252g00007.1	sp|A7RWP6|EIF3E_NEMVE	*-**	Eukaryotic translation initiation factor 3 subunit E	IPR016650 (Eukaryotic translation initiation factor 3 subunit E)	GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf02896g00008.1	AT2G12190.1	***-	Cytochrome P450 superfamily protein LENGTH=512	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02929g06127.1	ref|WP_031062443.1|	***-	enoyl-CoA hydratase [Streptomyces sp. NRRL F-5527]	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04392g05013.1	sp|Q9LTV8|PP224_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02441g01004.1			Unknown protein		
Niben101Scf02469g01011.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf14022g00011.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05231g00007.1	AT4G01440.1	***-	nodulin MtN21 /EamA-like transporter family protein LENGTH=365	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	
Niben101Scf01634g06003.1	sp|Q3K8F9|GPDA_PSEPF	*-**	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	IPR006168 (Glycerol-3-phosphate dehydrogenase, NAD-dependent), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004367 (glycerol-3-phosphate dehydrogenase [NAD+] activity), GO:0005737 (cytoplasm), GO:0005975 (carbohydrate metabolic process), GO:0006072 (glycerol-3-phosphate metabolic process), GO:0009331 (glycerol-3-phosphate dehydrogenase complex), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0046168 (glycerol-3-phosphate catabolic process), GO:0050662 (coenzyme binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03990g00011.1	AT3G59700.1	****	lectin-receptor kinase LENGTH=661	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf02253g11001.1	sp|P91309|VIP1_CAEEL	***-	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase	IPR029033 (Histidine phosphatase superfamily)	GO:0003993 (acid phosphatase activity)
Niben101Scf30418g00015.1	ref|XP_007009555.1|	-**-	Plant protein 1589 of Uncharacterized protein function [Theobroma cacao] gb|EOY18365.1| Plant protein 1589 of Uncharacterized protein function [Theobroma cacao]	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf09599g00016.1	sp|Q5R8B1|DPM3_PONAB	--*-	Dolichol-phosphate mannosyltransferase subunit 3	IPR013174 (Dolichol-phosphate mannosyltransferase subunit 3)	
Niben101Scf09696g01111.1			Unknown protein		
Niben101Scf06774g00001.1	ref|WP_020769012.1|	*-*-	alpha/beta hydrolase family protein [Lept [Leptospira sp. B5-022]	IPR016969 (Uncharacterised conserved protein UCP031088, alpha/beta hydrolase, At1g15070), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04741g02008.1	ref|XP_002522268.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF40126.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03923g01010.1	AT3G63340.2	***-	Protein phosphatase 2C family protein LENGTH=1075	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR011009 (Protein kinase-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05107g00005.1	gb|ABR45921.1|	***-	non-race specific disease resistance 1 [Arabidopsis thaliana]		
Niben101Scf00647g02010.1	sp|Q9LUM1|LOR11_ARATH	***-	Protein LURP-one-related 11	IPR025659 (Tubby C-terminal-like domain)	
Niben101Ctg14753g00004.1	sp|A2YNI2|MAD18_ORYSI	*-**	MADS-box transcription factor 18	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07182g05012.1	sp|Q42578|PER53_ARATH	****	Peroxidase 53	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01976g00012.1	sp|Q8GZA8|ULT1_ARATH	***-	Protein ULTRAPETALA 1		
Niben101Scf07899g00011.1	AT1G56460.2	*-*-	HIT zinc finger ;PAPA-1-like conserved region LENGTH=532	IPR006880 (INO80 complex subunit B-like conserved region), IPR007529 (Zinc finger, HIT-type), IPR029523 (INO80 complex, subunit Ies2)	GO:0006338 (chromatin remodeling), GO:0006355 (regulation of transcription, DNA-templated), GO:0031011 (Ino80 complex)
Niben101Scf12367g00001.1	sp|Q9SVU5|GDL67_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf07576g01018.1	AT5G28350.1	***-	Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor LENGTH=1127	IPR009771 (Ribosome control protein 1), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf07868g02002.1			Unknown protein		
Niben101Scf06570g02009.1	sp|P13934|LEA76_BRANA	--*-	Late embryogenesis abundant protein 76		
Niben101Scf07395g00032.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13308g01009.1	emb|CDY28746.1|	***-	BnaCnng06320D [Brassica napus]	IPR026057 (PC-Esterase)	
Niben101Scf02853g06016.1	gb|AAP53948.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf03428g00016.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04015g01005.1	sp|Q9C9H7|RLP12_ARATH	*-*-	Receptor-like protein 12	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf03267g00069.1			Unknown protein		
Niben101Scf01269g05002.1	AT1G50660.1	***-	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=725		
Niben101Scf04688g01015.1	sp|Q5K027|SIAT2_ORYLA	*-**	Beta-galactoside alpha-2,6-sialyltransferase 2	IPR001675 (Glycosyl transferase, family 29)	GO:0006486 (protein glycosylation), GO:0008373 (sialyltransferase activity), GO:0030173 (integral component of Golgi membrane)
Niben101Scf00123g00004.1	sp|Q945B4|AOP3L_ARATH	*-**	2-oxoglutarate-dependent dioxygenase AOP3	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03455g05018.1	sp|B8AZ99|MCM3_ORYSI	****	DNA replication licensing factor MCM3	IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027925 (MCM N-terminal domain)	GO:0003677 (DNA binding), GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006270 (DNA replication initiation), GO:0042555 (MCM complex)
Niben101Scf05453g00009.1	AT3G61200.1	***-	Thioesterase superfamily protein LENGTH=188	IPR029069 (HotDog domain)	
Niben101Scf12210g00001.1	ref|WP_017312960.1|	***-	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 [Fischerella sp. PCC 9339]	IPR008979 (Galactose-binding domain-like), IPR013857 (NADH:ubiquinone oxidoreductase intermediate-associated protein 30), IPR016040 (NAD(P)-binding domain)	
Niben101Scf01188g00006.1	AT5G07900.1	****	Mitochondrial transcription termination factor family protein LENGTH=405	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01879g02007.1	ref|XP_002533735.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF28647.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf10412g02017.1	sp|Q9JI11|STK4_MOUSE	*-**	Serine/threonine-protein kinase 4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03337g03007.1			Unknown protein	IPR027854 (Protein of unknown function DUF4535)	
Niben101Scf01782g08003.1	sp|Q9SVM4|GLYC5_ARATH	*-*-	Serine hydroxymethyltransferase 5	IPR015422 (Pyridoxal phosphate-dependent transferase, major region, subdomain 2)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf10064g00015.1	sp|Q6ENH4|PSAA_ORYNI	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf02869g10003.1	sp|Q8W1W9|5MAT1_SALSN	***-	Malonyl-coenzyme:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf08618g01009.1	sp|Q7DLR9|PSB4_ARATH	*-*-	Proteasome subunit beta type-4	IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf01343g00018.1	gb|ADX66725.1|	***-	xyloglucan-specific endoglucanase inhibitor protein 2 [Solanum tuberosum]	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf16022g01007.1	ref|XP_002523948.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF38435.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06412g03003.1	sp|Q6NLP7|GDL60_ARATH	--*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf01518g00009.1	AT1G68260.1	***-	Thioesterase superfamily protein LENGTH=190	IPR029069 (HotDog domain)	
Niben101Scf00579g02012.1	AT1G66360.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=174	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf10735g00008.1	ref|XP_002528353.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF34025.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11037g02013.1	gb|AED02502.1|	*-*-	xyloglucan-specific endoglucanase inhibitor [Solanum tuberosum]	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00568g04021.1	sp|Q2JV86|RL22_SYNJA	***-	50S ribosomal protein L22	IPR001063 (Ribosomal protein L22/L17)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03363g01010.1	sp|Q9STF0|LRKS3_ARATH	--*-	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03794g01027.1	sp|O80632|MTP11_ARATH	--*-	Metal tolerance protein 11		
Niben101Scf04000g00001.1	ref|WP_033646360.1|	***-	gluconolaconase [Serratia marcescens]	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf05132g02010.1	ref|WP_007812955.1|	***-	NADP-dependent aryl-alcohol dehydrogenase [Rhizobium sp. CF142] gb|EJJ31230.1| voltage-dependent potassium channel beta subunit [Rhizobium sp. CF142]	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf00135g03003.1	AT4G38840.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf04702g04004.1	sp|P37117|C71A4_SOLME	*-*-	Cytochrome P450 71A4	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04887g01001.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06596g02005.1	AT2G17705.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=127		
Niben101Scf02242g01006.1	sp|Q9SJ20|RIR1_ARATH	****	Ribonucleoside-diphosphate reductase large subunit	IPR000788 (Ribonucleotide reductase large subunit, C-terminal), IPR008926 (Ribonucleotide reductase R1 subunit, N-terminal)	GO:0004748 (ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor), GO:0005524 (ATP binding), GO:0006260 (DNA replication), GO:0055114 (oxidation-reduction process)
Niben101Scf02312g05006.1	sp|Q54ZG7|TM234_DICDI	***-	Transmembrane protein 234 homolog	IPR018908 (Uncharacterised protein family UPF0546)	
Niben101Scf01372g07005.1	AT2G26150.1	*-**	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03737g01002.1	sp|Q10FZ7|YAB2_ORYSJ	***-	Protein YABBY 2	IPR006780 (YABBY protein)	
Niben101Scf08137g01037.1	gb|KEH19553.1|	--*-	animal RPA1 domain protein [Medicago truncatula]		
Niben101Scf00140g02014.1	emb|CDY56499.1|	***-	BnaAnng14340D [Brassica napus]		
Niben101Scf03350g09010.1	AT5G07900.1	*-**	Mitochondrial transcription termination factor family protein LENGTH=405	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03817g13003.1	AT1G63800.1	***-	ubiquitin-conjugating enzyme 5 LENGTH=185	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf04126g05027.1	sp|O54912|KCNK3_RAT	--**	Potassium channel subfamily K member 3	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf04436g15048.1	sp|Q9ZVX5|PP156_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf09397g00009.1	emb|CDX80520.1|	***-	BnaC07g29240D [Brassica napus]		
Niben101Scf06996g02039.1	sp|Q8LG10|GAT15_ARATH	****	GATA transcription factor 15	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02566g02013.1	AT5G11650.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=390	IPR022742 (Putative lysophospholipase), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00033g03002.1	sp|Q9STS6|LBD27_ARATH	*-*-	LOB domain-containing protein 27	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf01429g01013.1	sp|Q9M9X4|NFYA2_ARATH	****	Nuclear transcription factor Y subunit A-2	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05118g02009.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf00344g00004.1	sp|Q6XL73|DNJ39_ARATH	--*-	Chaperone protein dnaJ 39	IPR001623 (DnaJ domain)	
Niben101Scf01842g02002.1	sp|Q8GW19|FACE2_ARATH	***-	CAAX prenyl protease 2	IPR003675 (CAAX amino terminal protease)	GO:0016020 (membrane)
Niben101Scf06840g00017.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf00193g03008.1	AT2G39970.1	***-	Mitochondrial substrate carrier family protein LENGTH=331	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf00975g02007.1	sp|Q89AF9|DEAD_BUCBP	*-**	ATP-dependent RNA helicase DeaD	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf06512g00006.1	AT4G17900.1	***-	PLATZ transcription factor family protein LENGTH=227	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf00552g00003.1	sp|O04514|OPT2_ARATH	***-	Oligopeptide transporter 2	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Ctg14895g00002.1	gb|AGL34232.1|	*-*-	plastid GTPase Der [Nicotiana benthamiana]		
Niben101Scf00576g02030.1	ref|XP_002527324.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF35076.1| conserved hypothetical protein [Ricinus communis]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf00621g03003.1	emb|CDY37280.1|	***-	BnaA01g25000D [Brassica napus]	IPR007770 (Protein of unknown function DUF679)	
Niben101Scf08039g03005.1	ref|WP_024915937.1|	****	NADP-dependent oxidoreductase [Pseudomonas aeruginosa]	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01817g00015.1	sp|O82337|AGP16_ARATH	*-*-	Arabinogalactan peptide 16	IPR009424 (Arabinogalactan peptide, AGP)	
Niben101Scf05732g00014.1	gb|AFX95944.1|	*-*-	green-ripe protein [Solanum melongena]	IPR008496 (Protein of unknown function DUF778)	
Niben101Scf02194g00028.1	AT2G37710.1	*-**	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf02243g00010.1	sp|Q556Y4|KC1_DICDI	****	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00110g04022.1	gb|AES61538.2|	***-	metal ion-binding protein [Medicago truncatula]	IPR029021 (Protein-tyrosine phosphatase-like)	
Niben101Scf02929g03003.1			Unknown protein		
Niben101Scf02367g00003.1	gb|KAK44454.1|	***-	NAD-dependent dehydratase [Burkholderia sp. MP-1]	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf01236g05019.1	sp|Q5HGY8|DLDH_STAAC	****	Dihydrolipoyl dehydrogenase	IPR006258 (Dihydrolipoamide dehydrogenase), IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR016156 (FAD/NAD-linked reductase, dimerisation domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0004148 (dihydrolipoyl dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016668 (oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13000g04017.1	sp|O23969|SF21_HELAN	***-	Pollen-specific protein SF21	IPR004142 (NDRG), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04021g02002.1	sp|Q9XJ60|MAD50_ORYSJ	*-*-	MADS-box transcription factor 50	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf09741g00011.1			Unknown protein		
Niben101Scf07207g02004.1	emb|CDI53211.1|	*-*-	conserved hypothetical protein [Melanopsichium pennsylvanicum 4]		
Niben101Scf04003g11002.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf10375g01019.1	sp|Q211U0|MURB_RHOPB	*-**	UDP-N-acetylenolpyruvoylglucosamine reductase	IPR003170 (UDP-N-acetylenolpyruvoylglucosamine reductase)	GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04217g02009.1	sp|Q7SY29|SPX2_DANRE	***-	Sugar phosphate exchanger 2	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03308g02015.1	AT4G22360.1	***-	SWIB complex BAF60b domain-containing protein LENGTH=385	IPR003121 (SWIB/MDM2 domain), IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding), GO:0005515 (protein binding)
Niben101Scf09696g01119.1	gb|AFI44276.1|	*-*-	NADH dehydrogenase subunit 5 (mitochondrion) [Silene vulgaris]		
Niben101Scf04109g05008.1	AT2G35920.1	*-*-	RNA helicase family protein LENGTH=995		
Niben101Scf01460g04018.1	sp|A6WXX1|ATPB_OCHA4	****	ATP synthase subunit beta	IPR005722 (ATPase, F1 complex, beta subunit), IPR020971 (ATP synthase, F1 beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000275 (mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)), GO:0005524 (ATP binding), GO:0006200 (ATP catabolic process), GO:0006754 (ATP biosynthetic process), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0015992 (proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0016887 (ATPase activity), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0046034 (ATP metabolic process), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Scf00140g01004.1	gb|KEH34910.1|	--*-	plant/F14D7-9 protein [Medicago truncatula]	IPR025131 (Domain of unknown function DUF4057)	
Niben101Scf01188g01007.1	AT1G21150.1	****	Mitochondrial transcription termination factor family protein LENGTH=390	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04422g15005.1	sp|Q9SRW7|APK3_ARATH	****	Adenylyl-sulfate kinase 3	IPR002891 (Adenylylsulphate kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000103 (sulfate assimilation), GO:0004020 (adenylylsulfate kinase activity), GO:0005524 (ATP binding)
Niben101Scf03292g01003.1	ref|NP_001049789.1|	*-*-	OsJ_10436 [Oryza sativa Japonica Group]		
Niben101Scf03766g07011.1	ref|WP_024920985.1|	***-	MULTISPECIES: hypothetical protein [Afipia]	IPR010376 (Domain of unknown function DUF971)	
Niben101Scf05767g01004.1	AT5G57840.1	****	HXXXD-type acyl-transferase family protein LENGTH=443	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04964g00002.1	sp|P51193|PSAF_PORPU	****	Photosystem I reaction center subunit III	IPR003666 (Photosystem I PsaF, reaction centre subunit III)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf00369g11014.1	sp|Q5ZML3|SRSF1_CHICK	*-*-	Serine/arginine-rich splicing factor 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02063g02013.1	sp|P10967|ACCH3_SOLLC	*-*-	1-aminocyclopropane-1-carboxylate oxidase homolog	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf07304g00005.1	sp|P83947|PME1_FICPW	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf14325g00007.1	AT2G24970.1	*-*-	unknown protein; Has 33 Blast hits to 33 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). LENGTH=152		
Niben101Scf00797g20014.1	AT1G55580.1	****	GRAS family transcription factor LENGTH=445	IPR005202 (Transcription factor GRAS), IPR030008 (Scarecrow-like protein 3)	GO:0000989 (transcription factor binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf01469g05002.1	sp|P06237|NOH4_RHIML	***-	Nodulation protein H	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf07741g04021.1	sp|Q9LK31|Y3272_ARATH	*-*-	Kelch repeat-containing protein	IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf10007g00002.1	AT4G39520.1	****	GTP-binding protein-related LENGTH=369	IPR005225 (Small GTP-binding protein domain), IPR012675 (Beta-grasp domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Ctg12075g00002.1	AT1G07310.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=352	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf05378g03013.1	AT1G65730.1	***-	YELLOW STRIPE like 7 LENGTH=688	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf00046g05007.1	dbj|BAC23030.1|	*-*-	ring H2 zinc finger [Solanum tuberosum]		
Niben101Scf02639g03014.1	AT3G12360.1	***-	Ankyrin repeat family protein LENGTH=590	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	GO:0005515 (protein binding)
Niben101Scf08309g00008.1	ref|XP_007021650.1|	***-	Actin cyt pan1, putative isoform 1 [Theobroma cacao]		
Niben101Scf14210g00017.1	sp|Q9LD18|POT4_ARATH	*-**	Potassium transporter 4	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf04184g04005.1	sp|Q9LQR0|LBD1_ARATH	*-*-	LOB domain-containing protein 1	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf04081g02005.1	sp|A7I5P3|RS19_METB6	****	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf01250g00002.1	AT1G49160.2	*-**	Protein kinase superfamily protein LENGTH=557	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04567g03025.1	AT5G23150.1	*-*-	Tudor/PWWP/MBT domain-containing protein LENGTH=1392	IPR006569 (CID domain)	
Niben101Scf13995g01015.1	ref|XP_007010390.1|	*-*-	Retrotransp [Theobroma cacao]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf01917g12009.1	AT5G23250.1	****	Succinyl-CoA ligase, alpha subunit LENGTH=341	IPR005810 (Succinyl-CoA ligase, alpha subunit), IPR016040 (NAD(P)-binding domain), IPR016102 (Succinyl-CoA synthetase-like)	GO:0003824 (catalytic activity), GO:0003878 (ATP citrate synthase activity), GO:0004775 (succinate-CoA ligase (ADP-forming) activity), GO:0008152 (metabolic process), GO:0048037 (cofactor binding)
Niben101Scf07226g08001.1	sp|Q9GZV1|ANKR2_HUMAN	*-*-	Ankyrin repeat domain-containing protein 2	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf04103g10013.1	sp|Q894B7|MURE_CLOTE	--*-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase		
Niben101Scf00705g02009.1	sp|P92999|GL118_ARATH	***-	Germin-like protein subfamily 1 member 18	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf05555g00010.1	sp|Q9LUJ2|PP249_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02413g03030.1	ref|XP_003612586.1|	*-*-	Transcription initiation factor TFIID subunit 1-A [Medicago truncatula]	IPR001487 (Bromodomain), IPR009067 (TAFII-230 TBP-binding), IPR022591 (Transcription initiation factor TFIID subunit 1, domain of unknown function), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf10314g02004.1	sp|Q54TV2|ABCG5_DICDI	*-*-	ABC transporter G family member 5	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf02594g08008.1	sp|Q9LFB8|PTR5_ARATH	***-	Protein NRT1/ PTR FAMILY 8.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf39169g00001.1	sp|Q6YXH5|ZHD1_ORYSJ	***-	Zinc-finger homeodomain protein 1	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf03932g04011.1	sp|O49508|FB237_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Ctg16210g00007.1	sp|P27492|CB21_TOBAC	***-	Chlorophyll a-b binding protein 16, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf01612g03002.1	sp|Q9LY71|CKX6_ARATH	****	Cytokinin dehydrogenase 6	IPR016164 (FAD-linked oxidase-like, C-terminal), IPR016166 (FAD-binding, type 2), IPR016170 (Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0009690 (cytokinin metabolic process), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0019139 (cytokinin dehydrogenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04950g03009.1	gb|AAT38781.2|	--*-	Receptor-like protein kinase, putative [Solanum demissum]		
Niben101Scf00765g02007.1	sp|P52434|RPAB3_HUMAN	****	DNA-directed RNA polymerases I, II, and III subunit RPABC3	IPR005570 (RNA polymerase, Rpb8)	GO:0006351 (transcription, DNA-templated)
Niben101Ctg15328g00002.1	AT2G37650.1	*-*-	GRAS family transcription factor LENGTH=718	IPR005202 (Transcription factor GRAS)	
Niben101Scf02008g00015.1	sp|Q5HYJ1|TECRL_HUMAN	****	Trans-2,3-enoyl-CoA reductase-like	IPR001104 (3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal)	GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
Niben101Scf03306g00001.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf16530g00019.1	emb|CDY42958.1|	***-	BnaA01g17960D [Brassica napus]		
Niben101Scf04000g01021.1	sp|Q9FL03|SCL4_ARATH	***-	Scarecrow-like protein 4	IPR005202 (Transcription factor GRAS)	
Niben101Scf01041g04001.1	AT1G56220.3	***-	Dormancy/auxin associated family protein LENGTH=140	IPR008406 (Dormancyauxin associated)	
Niben101Scf08918g02013.1	sp|Q9FIX3|PP407_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07296g00001.1	ref|XP_002510247.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52434.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf13938g00004.1	sp|P93311|RM02_ARATH	*-*-	60S ribosomal protein L2, mitochondrial		
Niben101Scf03241g00004.1	AT5G14520.1	***-	pescadillo-related LENGTH=590	IPR001357 (BRCT domain), IPR010613 (Pescadillo)	GO:0005730 (nucleolus), GO:0042254 (ribosome biogenesis)
Niben101Scf00990g00008.1	gb|ABU50826.1|	*-*-	GAGA-binding transcriptional activator [Arabidopsis arenosa]	IPR010409 (GAGA-binding transcriptional activator)	
Niben101Scf01022g03017.1	AT3G06630.1	*-**	protein kinase family protein LENGTH=671	IPR011009 (Protein kinase-like domain), IPR028324 (Serine/threonine-protein kinase CTR1)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01992g01012.1	sp|Q9LID0|LDL2_ARATH	***-	Lysine-specific histone demethylase 1 homolog 2	IPR002937 (Amine oxidase), IPR003042 (Aromatic-ring hydroxylase-like), IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01323g05011.1	AT1G11700.1	***-	Protein of unknown function, DUF584 LENGTH=201	IPR007608 (Senescence regulator S40)	
Niben101Scf00675g02004.1			Unknown protein		
Niben101Scf06089g00011.1	gb|ABA97715.1|	--*-	retrotransposon protein, putative, LINE subclass, expressed [Oryza sativa Japonica Group]		
Niben101Scf03941g01012.1	sp|Q94F58|NAC89_ARATH	*-*-	NAC domain-containing protein 89	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03624g05002.1	sp|O04514|OPT2_ARATH	*-*-	Oligopeptide transporter 2	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf02922g02020.1	sp|Q9MA98|ERCC1_ARATH	****	DNA excision repair protein ERCC-1	IPR004579 (DNA repair protein rad10), IPR010994 (RuvA domain 2-like), IPR011335 (Restriction endonuclease  type II-like)	GO:0003684 (damaged DNA binding), GO:0004519 (endonuclease activity), GO:0005634 (nucleus), GO:0006281 (DNA repair)
Niben101Scf01817g02017.1	AT4G23730.1	***-	Galactose mutarotase-like superfamily protein LENGTH=306	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf05216g04001.1	AT1G54340.1	****	isocitrate dehydrogenase LENGTH=416	IPR004790 (Isocitrate dehydrogenase NADP-dependent), IPR024084 (Isopropylmalate dehydrogenase-like domain)	GO:0000287 (magnesium ion binding), GO:0004450 (isocitrate dehydrogenase (NADP+) activity), GO:0006102 (isocitrate metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05151g00010.1	sp|Q8ZU33|SYE_PYRAE	--*-	Glutamate--tRNA ligase		
Niben101Scf03595g17006.1	ref|NP_175433.2|	*-*-	P-loop containing nucle [Arabidopsis thaliana]		
Niben101Scf00308g00001.1	emb|CDY62323.1|	***-	BnaC04g52310D [Brassica napus]		
Niben101Scf06261g03015.1	AT1G45207.2	***-	Remorin family protein LENGTH=555	IPR005516 (Remorin, C-terminal)	
Niben101Scf02992g01004.1			Unknown protein		
Niben101Scf07817g02001.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02289g10017.1	gb|ABR25403.1|	****	transferase (transferring glycosyl group) [Oryza sativa Indica Group]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf03062g05004.1	sp|P81898|PNAA_PRUDU	*-*-	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A	IPR021102 (Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A)	
Niben101Scf10676g01004.1	AT3G07350.1	***-	Protein of unknown function (DUF506) LENGTH=298	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf04748g02016.1	AT2G24650.1	*-**	DNA binding;DNA binding;sequence-specific DNA binding transcription factors LENGTH=1045	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf00620g00003.1	sp|A1C9U5|SKP1_ASPCL	*-**	E3 ubiquitin ligase complex SCF subunit sconC	IPR016072 (SKP1 component, dimerisation)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf02706g04012.1	sp|Q6DJ03|MEMO1_XENTR	***-	Protein MEMO1	IPR002737 (MEMO1 family)	
Niben101Scf00043g00010.1	gb|ABG37650.2|	--*-	CCHC-type integrase [Populus trichocarpa]		
Niben101Scf02081g00003.1	sp|Q8GUH1|PUB33_ARATH	*-*-	U-box domain-containing protein 33	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf01153g00012.1	ref|NP_001041883.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf00600g00005.1	sp|Q9LU89|2A5N_ARATH	****	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf04231g02015.1	sp|Q9FZ80|SOT17_ARATH	****	Cytosolic sulfotransferase 17	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Ctg11750g00002.1	sp|Q9NQW7|XPP1_HUMAN	*-*-	Xaa-Pro aminopeptidase 1	IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	GO:0016787 (hydrolase activity)
Niben101Scf17612g00001.1	sp|Q8GWU0|PGP2_ARATH	*-*-	Phosphoglycolate phosphatase 2	IPR006357 (HAD-superfamily hydrolase, subfamily IIA), IPR023214 (HAD-like domain), IPR023215 (Nitrophenylphosphatase-like  domain)	
Niben101Scf02915g08014.1	gb|KEH29260.1|	--*-	replication factor-A carboxy-terminal domain protein [Medicago truncatula]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf03885g02001.1	AT4G29230.1	***-	NAC domain containing protein 75 LENGTH=498	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04052g01017.1	AT1G68110.1	***-	ENTH/ANTH/VHS superfamily protein LENGTH=379	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf02031g01002.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf13683g01004.1	sp|Q7F8R0|C3H14_ORYSJ	***-	Zinc finger CCCH domain-containing protein 14	IPR000571 (Zinc finger, CCCH-type), IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0046872 (metal ion binding)
Niben101Scf02289g05017.1	sp|Q9LFW3|COBL4_ARATH	***-	COBRA-like protein 4	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf02823g01007.1	gb|ABV21218.1|	***-	[Arabidopsis thaliana]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf00579g01004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10970g00004.1	AT4G01810.1	*-*-	Sec23/Sec24 protein transport family protein LENGTH=880		
Niben101Scf02829g01003.1	sp|Q8L5R3|TBCD_ARATH	*-*-	Tubulin-folding cofactor D		
Niben101Scf02125g00018.1	sp|Q94A65|STR14_ARATH	*-*-	Rhodanese-like domain-containing protein 14, chloroplastic	IPR001763 (Rhodanese-like domain)	
Niben101Scf10225g00002.1	gb|KEH26506.1|	*-*-	M48 family peptidase [Medicago truncatula]		
Niben101Scf00792g05001.1	sp|Q9SU25|T2FA_ARATH	*-**	Transcription initiation factor IIF subunit alpha	IPR001280 (Photosystem I PsaA/PsaB), IPR008851 (Transcription initiation factor IIF, alpha subunit)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0005634 (nucleus), GO:0006367 (transcription initiation from RNA polymerase II promoter), GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0032968 (positive regulation of transcription elongation from RNA polymerase II promoter)
Niben101Scf06583g01003.1	emb|CBR23889.1|	*-*-	Ycf1 protein [Olea europaea subsp. cuspidata]	IPR008896 (Uncharacterised protein family Ycf1), IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf00149g12014.1	sp|Q9LYN8|EXS_ARATH	*-*-	Leucine-rich repeat receptor protein kinase EXS	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf07775g00009.1	sp|A3CT12|RS8_METMJ	***-	30S ribosomal protein S8	IPR000630 (Ribosomal protein S8)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04900g00006.1	sp|Q92994|TF3B_HUMAN	--*-	Transcription factor IIIB 90 kDa subunit	IPR020164 (Cytochrome c oxidase assembly protein COX16)	GO:0031966 (mitochondrial membrane)
Niben101Scf10966g03015.1			Unknown protein		
Niben101Scf01157g02022.1	sp|Q5XGY1|TSR1_XENLA	***-	Pre-rRNA-processing protein TSR1 homolog	IPR007034 (Ribosome biogenesis protein BMS1/TSR1, C-terminal), IPR012948 (AARP2CN), IPR030387 (Bms1/Tsr1-type G domain)	GO:0005634 (nucleus), GO:0042254 (ribosome biogenesis)
Niben101Scf11491g02037.1	sp|Q74MI6|EF1A_NANEQ	***-	Elongation factor 1-alpha	IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal)	GO:0005525 (GTP binding)
Niben101Scf03274g00004.1	ref|XP_002315958.2|	*-**	DNA-binding protein RAV2 [Populus trichocarpa] gb|EEF02129.2| DNA-binding protein RAV2 [Populus trichocarpa]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf07812g00002.1	sp|Q9C7N4|GDL15_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf12045g06024.1	AT3G04710.1	***-	ankyrin repeat family protein LENGTH=456	IPR011990 (Tetratricopeptide-like helical domain), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf00213g01002.1	AT5G60900.1	****	receptor-like protein kinase 1 LENGTH=748	IPR000742 (Epidermal growth factor-like domain), IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf37331g00003.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf05654g00021.1			Unknown protein		
Niben101Scf02085g12001.1	sp|Q06721|RCA_ANASC	***-	Ribulose bisphosphate carboxylase/oxygenase activase	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02700g02012.1	AT4G28150.1	*-*-	Protein of unknown function (DUF789) LENGTH=285	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf04539g02013.1	sp|P49043|VPE_CITSI	***-	Vacuolar-processing enzyme	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00927g11001.1	sp|O43001|SYJ1_SCHPO	*-**	Inositol-1,4,5-trisphosphate 5-phosphatase 1	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf08721g00007.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01240g04004.1	sp|F4K460|MED17_ARATH	****	Mediator of RNA polymerase II transcription subunit 17	IPR019313 (Mediator complex, subunit Med17)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf09620g05004.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01681g03003.1	AT4G34860.1	*-*-	Plant neutral invertase family protein LENGTH=571	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf04945g02005.1	sp|Q8L9S1|R18AL_ARATH	*-*-	60S ribosomal protein L18a-like protein		
Niben101Scf06909g00010.1	sp|O04504|PPR27_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00996g00019.1	gb|AEB40577.1|	***-	cytochrome P450 subunit CYP72A13 [Helianthus annuus]	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05628g01018.1	sp|O18757|SCMC1_RABIT	--**	Calcium-binding mitochondrial carrier protein SCaMC-1	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf05078g03006.1	sp|A5D1G6|MTAD_PELTS	***-	5-methylthioadenosine/S-adenosylhomocysteine deaminase	IPR006680 (Amidohydrolase 1), IPR011059 (Metal-dependent hydrolase, composite domain)	GO:0016787 (hydrolase activity), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf00131g01022.1	AT2G23755.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). LENGTH=150	IPR029377 (TMEM220 protein)	
Niben101Scf01054g12001.1	AT1G80510.1	***-	Transmembrane amino acid transporter family protein LENGTH=489	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf03619g03003.1	sp|A2R7Z2|EIF3G_ASPNC	****	Eukaryotic translation initiation factor 3 subunit G	IPR017334 (Eukaryotic translation initiation factor 3 subunit G), IPR024675 (Eukaryotic translation initiation factor 3 subunit G, N-terminal)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf03822g00017.1	sp|Q5I0I8|NOC4L_RAT	*-*-	Nucleolar complex protein 4 homolog	IPR005612 (CCAAT-binding factor), IPR027193 (Nucleolar complex protein 4)	GO:0042254 (ribosome biogenesis)
Niben101Scf07926g05015.1	sp|A6UVU6|DGGGP_META3	*-*-	Digeranylgeranylglyceryl phosphate synthase	IPR000537 (UbiA prenyltransferase family)	GO:0004659 (prenyltransferase activity), GO:0016021 (integral component of membrane)
Niben101Scf01756g00016.1	AT5G04480.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=1050		
Niben101Scf02408g02001.1	sp|Q3E7I6|GDL11_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00063g10008.1	sp|Q9SQL2|CB24_PEA	***-	Chlorophyll a-b binding protein P4, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf00345g01008.1			Unknown protein		
Niben101Scf06435g02002.1	ref|XP_002529236.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF33149.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00090g04004.1	gb|KEH42602.1|	-***	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf03647g03024.1	sp|Q39445|TBB_CICAR	*-*-	Tubulin beta chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf02693g01013.1	emb|CAB90452.1|	*-**	homolog to cAMP response element binding and beta transducin family proteins [Homo sapiens]	IPR001487 (Bromodomain), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03804g05014.1	AT4G08310.1	***-	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages;	IPR009057 (Homeodomain-like), IPR019098 (Histone chaperone domain CHZ)	GO:0003677 (DNA binding)
Niben101Scf00069g10002.1	gb|AES90541.2|	*-*-	octicosapeptide/phox/Bem1p (PB1) domain protein [Medicago truncatula]	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf00085g02008.1			Unknown protein		
Niben101Scf17524g00016.1	sp|Q0WNJ6|CLAH1_ARATH	--*-	Clathrin heavy chain 1		
Niben101Scf01141g04002.1	AT5G65380.1	*-*-	MATE efflux family protein LENGTH=486	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02896g00005.1	AT2G12190.1	*-*-	Cytochrome P450 superfamily protein LENGTH=512	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04674g00009.1	sp|F4JAU3|P4H2_ARATH	--*-	Prolyl 4-hydroxylase 2		
Niben101Scf02073g07006.1	sp|Q9FGW5|CDKG1_ARATH	*-**	Cyclin-dependent kinase G1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05649g05013.1	sp|Q9M302|PP270_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05469g00003.1	AT4G18700.1	****	CBL-interacting protein kinase 12 LENGTH=489	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04284g00021.1	AT1G16860.1	***-	Ubiquitin-specific protease family C19-related protein LENGTH=474		
Niben101Scf09751g01017.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf00650g06008.1	sp|Q84JS6|KNAT6_ARATH	***-	Homeobox protein knotted-1-like 6	IPR005540 (KNOX1), IPR005541 (KNOX2)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf08271g00008.1			Unknown protein		
Niben101Scf00757g05004.1	AT5G08060.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=131		
Niben101Scf04654g03002.1	sp|Q9M302|PP270_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf21171g00004.1	sp|O82528|RL15_PETHY	***-	60S ribosomal protein L15	IPR000439 (Ribosomal protein L15e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07229g01004.1	sp|Q9USR1|TXL1_SCHPO	*-*-	Thioredoxin-like protein 1	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf08675g00021.1	AT1G48570.1	****	zinc finger (Ran-binding) family protein LENGTH=455	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf07639g05011.1	sp|B0JUI1|CH10_MICAN	-**-	10 kDa chaperonin	IPR020818 (Chaperonin Cpn10)	GO:0005737 (cytoplasm), GO:0006457 (protein folding)
Niben101Scf04715g00003.1			Unknown protein		
Niben101Scf07018g05002.1	sp|F4K295|ROGF5_ARATH	****	Rop guanine nucleotide exchange factor 5	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf00854g04009.1			Unknown protein		
Niben101Scf33979g00002.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR017451 (F-box associated interaction domain)	
Niben101Scf00536g15024.1	sp|P41095|RLA0_ORYSJ	***-	60S acidic ribosomal protein P0	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf07044g03011.1	AT3G14270.1	*-**	phosphatidylinositol-4-phosphate 5-kinase family protein LENGTH=1791	IPR002423 (Chaperonin Cpn60/TCP-1), IPR002498 (Phosphatidylinositol-4-phosphate 5-kinase, core), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027409 (GroEL-like apical domain), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0044267 (cellular protein metabolic process), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf05326g02004.1	sp|P92961|PROT1_ARATH	***-	Proline transporter 1	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf10678g00002.1	sp|Q9ASZ8|PPR37_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07838g00011.1			Unknown protein		
Niben101Scf03941g00004.1	emb|CDY04984.1|	***-	BnaAnng01660D [Brassica napus]		
Niben101Scf05107g00007.1	sp|Q6CB69|DED1_YARLI	****	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR007529 (Zinc finger, HIT-type), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf15836g01009.1	ref|XP_007015446.1|	***-	N-terminal isoform 1 [Theobroma cacao] gb|EOY33065.1| N-terminal isoform 1 [Theobroma cacao]	IPR019176 (Cytochrome B561-related)	
Niben101Scf08609g01016.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf10330g00002.1	sp|Q58501|GLMU_METJA	***-	Bifunctional protein GlmU	IPR001451 (Bacterial transferase hexapeptide repeat), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf00133g04024.1	sp|P81898|PNAA_PRUDU	***-	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A	IPR021102 (Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A)	
Niben101Scf01739g01006.1	sp|O64769|POT11_ARATH	*-**	Potassium transporter 11	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf02863g00002.1			Unknown protein		
Niben101Scf01872g02003.1	sp|Q94A28|ACO3M_ARATH	--*-	Aconitate hydratase 3, mitochondrial		
Niben101Scf13017g00016.1	sp|Q9XHP0|11S2_SESIN	***-	11S globulin seed storage protein 2	IPR006044 (11-S seed storage protein, plant)	GO:0045735 (nutrient reservoir activity)
Niben101Scf06750g00007.1	sp|P77931|PVADH_PSESP	***-	Polyvinylalcohol dehydrogenase	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily)	
Niben101Scf02057g01003.1	gb|AAU95280.1|	*-*-	R1 [Solanum tuberosum]	IPR002182 (NB-ARC)	GO:0043531 (ADP binding)
Niben101Scf02694g06025.1	gb|KEH39494.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Ctg15234g00002.1	AT1G10020.1	*-*-	Protein of unknown function (DUF1005) LENGTH=461	IPR010410 (Protein of unknown function DUF1005)	
Niben101Scf00257g00011.1	gb|AES91542.2|	***-	epidermal patterning factor-like protein [Medicago truncatula]		
Niben101Scf04411g01004.1	sp|Q8LAS8|SFGH_ARATH	****	S-formylglutathione hydrolase	IPR000801 (Putative esterase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0018738 (S-formylglutathione hydrolase activity), GO:0046294 (formaldehyde catabolic process)
Niben101Scf08685g00019.1			Unknown protein		
Niben101Scf02243g01001.1	sp|Q9M384|SCR_ARATH	***-	Protein SCARECROW	IPR005202 (Transcription factor GRAS)	
Niben101Scf00541g00005.1	sp|Q9LFH0|AB37G_ARATH	*-*-	ABC transporter G family member 37	IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0016020 (membrane)
Niben101Scf02057g01004.1			Unknown protein		
Niben101Scf05957g00001.1	sp|Q07060|ATP9_PETSP	*-**	ATP synthase subunit 9, mitochondrial	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf06123g05003.1	AT1G16860.1	*-*-	Ubiquitin-specific protease family C19-related protein LENGTH=474		
Niben101Scf00193g01010.1	sp|Q9LP45|PSD11_ARATH	***-	26S proteasome non-ATPase regulatory subunit 11 homolog	IPR000717 (Proteasome component (PCI) domain), IPR011990 (Tetratricopeptide-like helical domain), IPR013143 (PCI/PINT associated module)	GO:0005515 (protein binding)
Niben101Scf02406g03001.1			Unknown protein		
Niben101Scf01180g07001.1			Unknown protein		
Niben101Scf04932g00014.1			Unknown protein		
Niben101Scf05535g02003.1	sp|C0LGT6|EFR_ARATH	--*-	LRR receptor-like serine/threonine-protein kinase EFR		
Niben101Scf01543g03001.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10289g00006.1	sp|Q24K02|IDE_BOVIN	***-	Insulin-degrading enzyme	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0046872 (metal ion binding)
Niben101Scf01302g05009.1	AT1G17580.1	*-**	myosin 1 LENGTH=1520	IPR000048 (IQ motif, EF-hand binding site), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf06825g03011.1	sp|Q6ZPJ0|TEX2_MOUSE	--*-	Testis-expressed sequence 2 protein	IPR019411 (Domain of unknown function DUF2404)	
Niben101Scf03287g02004.1	sp|Q9LV40|ROGF8_ARATH	****	Rho guanine nucleotide exchange factor 8	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf02441g01003.1	AT5G59990.1	***-	CCT motif family protein LENGTH=241	IPR010402 (CCT domain)	GO:0005515 (protein binding)
Niben101Scf04997g00001.1			Unknown protein		
Niben101Scf05697g04005.1			Unknown protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf04763g02005.1	emb|CDX95941.1|	*-*-	BnaA07g27900D [Brassica napus]	IPR008581 (Protein of unknown function DUF863, plant)	
Niben101Scf00185g00001.1			Unknown protein	IPR003496 (ABA/WDS induced protein)	GO:0006950 (response to stress)
Niben101Scf00212g01017.1	sp|P60040|RL72_ARATH	*-*-	60S ribosomal protein L7-2	IPR006943 (Domain of unknown function DUF641, plant), IPR016082 (Ribosomal protein L30, ferredoxin-like fold domain)	
Niben101Scf00402g00002.1			Unknown protein		
Niben101Scf00023g03016.1	sp|Q15042|RB3GP_HUMAN	*-**	Rab3 GTPase-activating protein catalytic subunit	IPR026147 (Rab3 GTPase-activating protein catalytic subunit)	GO:0005097 (Rab GTPase activator activity)
Niben101Scf02052g00010.1	sp|Q9FEP7|SUT13_ARATH	****	Sulfate transporter 1.3	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf14412g00012.1	sp|O48520|DPOD2_ARATH	*-*-	DNA polymerase delta small subunit	IPR024826 (DNA polymerase delta/II small subunit family)	
Niben101Scf01205g04009.1	AT1G75620.1	***-	glyoxal oxidase-related protein LENGTH=547	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR014756 (Immunoglobulin E-set), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf02853g05019.1	sp|Q2NZE3|SAHH_XANOM	*-**	Adenosylhomocysteinase	IPR000043 (Adenosylhomocysteinase), IPR016040 (NAD(P)-binding domain)	GO:0004013 (adenosylhomocysteinase activity), GO:0006730 (one-carbon metabolic process)
Niben101Scf04654g03001.1	AT3G48140.1	***-	B12D protein LENGTH=88	IPR010530 (NADH-ubiquinone reductase complex 1 MLRQ subunit)	
Niben101Scf01619g00016.1	AT1G53780.2	*-**	peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases LENGTH=620	IPR003959 (ATPase, AAA-type, core), IPR009010 (Aspartate decarboxylase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029067 (CDC48 domain 2-like)	GO:0005524 (ATP binding)
Niben101Scf06395g00002.1	sp|P38055|YDJE_ECOLI	****	Inner membrane metabolite transport protein YdjE	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00488g06014.1	emb|CDX73116.1|	***-	BnaC06g35640D [Brassica napus]	IPR007656 (Zein-binding domain)	
Niben101Scf02895g01003.1	AT3G13870.1	****	Root hair defective 3 GTP-binding protein (RHD3) LENGTH=802	IPR008803 (RHD3/Sey1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf37384g00002.1	AT5G22870.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=207	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf01985g01011.1	AT2G37180.1	*-*-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf11734g01007.1	AT5G52540.1	***-	Protein of unknown function (DUF819) LENGTH=461	IPR008537 (Protein of unknown function DUF819)	
Niben101Scf21935g00006.1	sp|P48001|KNAT4_ARATH	*-*-	Homeobox protein knotted-1-like 4	IPR005540 (KNOX1)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf02063g03006.1	AT1G06620.1	*-**	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=365	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00568g04022.1	sp|Q8DMM5|RL16_THEEB	*-*-	50S ribosomal protein L16	IPR000114 (Ribosomal protein L16), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf08679g00010.1	sp|Q9C895|BRE1B_ARATH	***-	E3 ubiquitin-protein ligase BRE1-like 2	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01693g03009.1	emb|CAE05840.2|	*-*-	OSJNBa0091C07.2 [Oryza sativa Japonica Group]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf01655g02025.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf05811g06013.1	AT1G07420.1	***-	sterol 4-alpha-methyl-oxidase 2-1 LENGTH=266	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf31516g00001.1	ref|XP_002534699.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF27685.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00963g03001.1	sp|B2RHB7|GPMA_PORG3	--*-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	IPR001345 (Phosphoglycerate/bisphosphoglycerate mutase, active site), IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf07585g00003.1	sp|Q7XJE6|MCA1_ARATH	***-	Metacaspase-1	IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf10064g00014.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00212g03029.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00851g06022.1	sp|Q9SI78|PPR93_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02626g00003.1	emb|CDY65151.1|	***-	BnaCnng45880D [Brassica napus]		
Niben101Scf05233g00012.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03425g04002.1	AT1G71850.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=470	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf02408g04006.1	emb|CDY08660.1|	*-*-	BnaC04g19690D [Brassica napus]	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf07152g04035.1	sp|Q9UNW9|NOVA2_HUMAN	*-**	RNA-binding protein Nova-2	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf20935g00018.1	AT2G43410.2	*-**	RNA binding LENGTH=901	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR012921 (Spen paralogue and orthologue SPOC, C-terminal)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf18308g01004.1	sp|P05100|3MG1_ECOLI	****	DNA-3-methyladenine glycosylase 1	IPR005019 (Methyladenine glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0008725 (DNA-3-methyladenine glycosylase activity)
Niben101Scf02160g01004.1	AT1G73805.1	*-*-	Calmodulin binding protein-like LENGTH=451	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf04082g00007.1	sp|Q2N923|RL32_ERYLH	--**	50S ribosomal protein L32	IPR002677 (Ribosomal protein L32p), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf01281g00001.1	AT4G20840.1	****	FAD-binding Berberine family protein LENGTH=539	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03779g08009.1	sp|Q9WTL2|RAB25_MOUSE	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00447g02009.1	emb|CDY07177.1|	***-	BnaCnng01920D [Brassica napus]	IPR010605 (Protein of unknown function DUF1191)	
Niben101Scf03515g00092.1			Unknown protein		
Niben101Scf05675g01004.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf01269g13040.1	sp|Q3V516|PETG_ACOCL	****	Cytochrome b6-f complex subunit 5	IPR003683 (Cytochrome b6/f complex, subunit 5)	GO:0009512 (cytochrome b6f complex)
Niben101Scf02019g00005.1	sp|A6RKG5|RRP36_BOTFB	***-	rRNA biogenesis protein rrp36	IPR009292 (Protein of unknown function DUF947)	
Niben101Scf03822g00016.1	ref|NP_001048843.1|	***-	[Oryza sativa Japonica Group] dbj|BAF10757.1| [Oryza sativa Japonica Group]		
Niben101Scf01184g00003.1	gb|AID51440.1|	*-*-	phosphomevalonate kinase 1 [Astragalus membranaceus]		
Niben101Scf13865g00007.1	gb|AES95732.2|	*-**	bZIP transcription factor family protein [Medicago truncatula]	IPR012900 (G-box binding, MFMR)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04504g02020.1	AT5G54290.2	****	cytochrome c biogenesis protein family LENGTH=355	IPR003834 (Cytochrome c assembly protein, transmembrane domain)	GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0055114 (oxidation-reduction process)
Niben101Scf04732g00007.1	emb|CAM59673.1|	****	parvulin-type peptidyl prolyl cis/trans isomerase [Lotus japonicus]	IPR000297 (Peptidyl-prolyl cis-trans isomerase, PpiC-type), IPR001763 (Rhodanese-like domain)	GO:0016853 (isomerase activity)
Niben101Scf00986g02002.1	sp|A7X2W2|SYG_STAA1	*-**	Glycine--tRNA ligase	IPR009068 (S15/NS1, RNA-binding), IPR027031 (Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004820 (glycine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006426 (glycyl-tRNA aminoacylation)
Niben101Scf00307g01009.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg14130g00004.1	sp|Q9STZ2|SELT_ARATH	--*-	SelT-like protein		
Niben101Scf02357g07009.1	sp|A0DJ90|PPX2_PARTE	****	Serine/threonine-protein phosphatase PP-X homolog 2	IPR011236 (Serine/threonine protein phosphatase 5), IPR029052 (Metallo-dependent phosphatase-like)	GO:0004721 (phosphoprotein phosphatase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006470 (protein dephosphorylation), GO:0016787 (hydrolase activity)
Niben101Scf00926g00001.1	gb|KEH37797.1|	*-*-	F-box/RNI/FBD-like domain protein [Medicago truncatula]		
Niben101Scf12197g03014.1	gb|AAB18261.1|	*-*-	glycine-rich protein, partial [Nicotiana tabacum]		
Niben101Scf10465g00013.1	AT1G28130.1	***-	Auxin-responsive GH3 family protein LENGTH=609	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf00747g00005.1	emb|CDY11893.1|	*-*-	BnaC03g13190D [Brassica napus]		
Niben101Scf01052g01003.1			Unknown protein		
Niben101Scf02338g00005.1	dbj|BAB64937.1|	--*-	TdcA1-ORF1-ORF2 [Daucus carota]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf03048g05006.1	sp|Q6H711|MAD29_ORYSJ	*-*-	MADS-box transcription factor 29	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf02111g17003.1	AT2G01570.1	***-	GRAS family transcription factor family protein LENGTH=587	IPR005202 (Transcription factor GRAS)	
Niben101Scf00046g07015.1	sp|P57758|CTNS_ARATH	***-	Cystinosin homolog	IPR005282 (Lysosomal cystine transporter)	
Niben101Scf02531g02002.1	ref|XP_007025336.1|	****	Rho termination factor, putative isoform 2 [Theobroma cacao] gb|EOY27958.1| Rho termination factor, putative isoform 2 [Theobroma cacao]	IPR003034 (SAP domain), IPR011112 (Rho termination factor, N-terminal)	GO:0006353 (DNA-templated transcription, termination)
Niben101Scf06113g00021.1	sp|P12301|PSBQ_SPIOL	****	Oxygen-evolving enhancer protein 3, chloroplastic	IPR008797 (Photosystem II PsbQ, oxygen evolving complex), IPR023222 (PsbQ-like domain)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf21986g00001.1	sp|Q9CA40|NUDT1_ARATH	****	Nudix hydrolase 1	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf02151g04016.1	sp|Q9SC19|UPTG1_SOLTU	***-	Alpha-1,4-glucan-protein synthase [UDP-forming] 1	IPR004901 (Reversibly glycosylated polypeptide family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016866 (intramolecular transferase activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf02620g00021.1	sp|Q923S8|PANK4_RAT	*-*-	Pantothenate kinase 4	IPR002791 (Domain of unknown function DUF89)	
Niben101Scf10566g01003.1	sp|Q9SFZ3|BH110_ARATH	***-	Transcription factor bHLH110	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf11124g01022.1	AT3G07170.1	***-	Sterile alpha motif (SAM) domain-containing protein LENGTH=203	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf01017g05014.1	AT2G33380.1	***-	Caleosin-related family protein LENGTH=236	IPR007736 (Caleosin)	
Niben101Scf05830g01006.1	ref|XP_003614078.1|	*-*-	HGWP repeat containing protein-like protein [Medicago truncatula]		
Niben101Scf03660g01004.1	sp|Q9ZPW7|ZHD6_ARATH	***-	Zinc-finger homeodomain protein 6	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf04500g03018.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10122g00007.1	sp|P05100|3MG1_ECOLI	*-**	DNA-3-methyladenine glycosylase 1	IPR005019 (Methyladenine glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0008725 (DNA-3-methyladenine glycosylase activity)
Niben101Scf06412g00006.1			Unknown protein		
Niben101Scf06812g00010.1	sp|Q32NQ8|RNF10_XENLA	--*-	RING finger protein 10	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02286g00004.1	ref|XP_007015311.1|	*-*-	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain isoform 1 [Theobroma cacao] gb|EOY32930.1| Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain isoform 1 [Theobroma cacao]		
Niben101Scf04054g02001.1	ref|XP_007047826.1|	***-	Folic acid and derivative biosynthetic process, putative [Theobroma cacao] gb|EOX91983.1| Folic acid and derivative biosynthetic process, putative [Theobroma cacao]	IPR005645 (Serine hydrolase FSH)	
Niben101Scf02438g02001.1	AT1G06290.1	****	acyl-CoA oxidase 3 LENGTH=675	IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR012258 (Acyl-CoA oxidase)	GO:0003995 (acyl-CoA dehydrogenase activity), GO:0003997 (acyl-CoA oxidase activity), GO:0005777 (peroxisome), GO:0006631 (fatty acid metabolic process), GO:0006635 (fatty acid beta-oxidation), GO:0008152 (metabolic process), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02362g01018.1	ref|XP_002531760.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF30616.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02785g02015.1	sp|P93003|TFL1_ARATH	***-	Protein TERMINAL FLOWER 1	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf00461g01004.1	sp|Q9XI23|BOR4_ARATH	*-*-	Boron transporter 4	IPR003020 (Bicarbonate transporter, eukaryotic)	GO:0005452 (inorganic anion exchanger activity), GO:0006820 (anion transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf04745g04005.1	sp|Q9FLZ9|PP405_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01188g00005.1	dbj|BAD38193.1|	*-**	mitochondrial transcription termination factor-like [Oryza sativa Japonica Group]	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02720g00002.1			Unknown protein		
Niben101Scf03426g01008.1	sp|Q5ZJK8|TCPH_CHICK	*-*-	T-complex protein 1 subunit eta	IPR027410 (TCP-1-like chaperonin intermediate domain)	
Niben101Scf14630g01003.1	AT3G22270.1	***-	Topoisomerase II-associated protein PAT1 LENGTH=782		
Niben101Scf00369g24023.1	sp|Q9LZM4|WAKLQ_ARATH	*-*-	Wall-associated receptor kinase-like 20	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf04011g04001.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03651g05004.1	sp|Q70WY6|DNAJ_FUSNP	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03839g06001.1	gb|KEH20434.1|	*-*-	alpha/beta fold hydrolase [Medicago truncatula]		
Niben101Scf09854g02011.1	sp|Q9FPT1|UBP12_ARATH	*-*-	Ubiquitin carboxyl-terminal hydrolase 12		
Niben101Scf01710g04007.1	sp|Q9XEF0|BH051_ARATH	*-*-	Transcription factor bHLH51	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02074g04136.1	dbj|BAM36190.1|	*-*-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf08333g07001.1	sp|O80365|ARR8_ARATH	***-	Two-component response regulator ARR8	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf03341g03001.1	ref|XP_002520429.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF41842.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03595g17005.1	ref|XP_007043314.1|	--*-	P-loop containing nucle isoform 2 [Theobroma cacao]		
Niben101Scf02752g08002.1			Unknown protein		
Niben101Scf10172g00001.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02085g17011.1			Unknown protein		
Niben101Scf01745g02005.1	sp|Q9XE58|SCL14_ARATH	***-	Scarecrow-like protein 14	IPR005202 (Transcription factor GRAS)	
Niben101Scf03924g01006.1	gb|AAU95633.1|	*-*-	R1 [Solanum tuberosum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf07162g05035.1	gb|ACF19787.1|	***-	NAC transcription factor [Nicotiana tabacum]		
Niben101Scf02508g03015.1	sp|Q9ZW24|GSTU7_ARATH	*-*-	Glutathione S-transferase U7	IPR010987 (Glutathione S-transferase, C-terminal-like)	
Niben101Scf04663g05020.1	AT2G25660.1	***-	embryo defective 2410 LENGTH=2166	IPR007452 (Protein of unknown function DUF490)	
Niben101Scf11689g02006.1	sp|Q9ZUH5|SDR2B_ARATH	--**	Short-chain dehydrogenase/reductase 2b	IPR002198 (Short-chain dehydrogenase/reductase SDR)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf03069g04013.1	sp|P29545|EF1B_ORYSJ	****	Elongation factor 1-beta	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR014717 (Translation elongation factor EF1B/ribosomal protein S6)	GO:0003746 (translation elongation factor activity), GO:0005853 (eukaryotic translation elongation factor 1 complex), GO:0006414 (translational elongation)
Niben101Scf07034g04011.1	AT3G51070.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=895	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf00698g02007.1	emb|CDY65979.1|	--*-	BnaCnng49210D [Brassica napus]		
Niben101Scf08466g00003.1	sp|Q9SUF9|PP305_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02360g01017.1	sp|Q62276|MED22_MOUSE	*-**	Mediator of RNA polymerase II transcription subunit 22	IPR009332 (Mediator complex, subunit Med22)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf07790g01010.1			Unknown protein		
Niben101Scf00618g01004.1	sp|Q9FXA2|PABP8_ARATH	*-**	Polyadenylate-binding protein 8	IPR002004 (Polyadenylate-binding protein/Hyperplastic disc protein)	GO:0003723 (RNA binding)
Niben101Scf02449g02004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03396g07003.1	gb|AID55060.1|	--*-	disease resistance protein, partial [Solanum habrochaites]		
Niben101Scf01307g02004.1	ref|XP_002529714.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF32680.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06846g01003.1	emb|CDX91495.1|	*-*-	BnaC04g06550D [Brassica napus]		
Niben101Scf10576g01014.1	ref|WP_022881105.1|	--*-	3-phosphoshikimate 1-carboxyvinyltransferase [Gryllotalpicola ginsengisoli]		
Niben101Scf00109g00017.1	ref|XP_003630569.1|	***-	Mitochondrial phosphate carrier protein [Medicago truncatula]	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf01399g00018.1	emb|CDY14293.1|	-**-	BnaA08g14240D [Brassica napus]		
Niben101Scf03431g00004.1	sp|B3CUK2|NUOH_ORITI	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf06556g01001.1	emb|CDY70231.1|	***-	BnaAnng33040D [Brassica napus]	IPR007650 (Zf-FLZ domain)	
Niben101Scf08495g00006.1	sp|P38144|ISW1_YEAST	*-**	ISWI chromatin-remodeling complex ATPase ISW1	IPR000330 (SNF2-related), IPR029915 (ISWI family)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0016589 (NURF complex), GO:0016887 (ATPase activity), GO:0043044 (ATP-dependent chromatin remodeling)
Niben101Scf07741g02033.1	sp|Q9LU39|GLUBP_ARATH	****	Glutamyl-tRNA reductase-binding protein, chloroplastic	IPR012349 (FMN-binding split barrel)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf18107g00005.1	sp|P58350|AATB_RHIME	***-	Aspartate aminotransferase B	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf15907g00014.1	sp|P12451|POL_HV2SB	--*-	Gag-Pol polyprotein	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf04028g03001.1	AT5G04730.1	*-*-	Ankyrin-repeat containing protein LENGTH=603	IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	
Niben101Scf00135g03006.1	AT4G38840.1	***-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf07841g00007.1	ref|NP_001147322.1|	*-**	milkweed pod1 [Zea mays] gb|ACG26785.1| myb-like DNA-binding domain, SHAQKYF class family protein [Zea mays] gb|ACH56977.1| milkweed pod1 [Zea mays] tpg|DAA61335.1| TPA: LOW QUALITY PROTEIN: milkweed pod1 [Zea mays]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05137g01028.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR000858 (S-locus glycoprotein), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR029469 (PAN-4 domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf06027g00002.1	sp|Q6X7J4|WOX9_ARATH	*-*-	WUSCHEL-related homeobox 9	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf01196g01001.1	sp|Q1KVS5|PSAB_ACUOB	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf09458g01013.1	sp|A0MFL4|LOR17_ARATH	***-	Protein LURP-one-related 17	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf02602g01015.1	sp|Q5M786|WDR5_XENTR	*-*-	WD repeat-containing protein 5	IPR011009 (Protein kinase-like domain), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02847g00040.1	sp|P05499|ATP6_TOBAC	*-**	ATP synthase subunit a	IPR000568 (ATPase, F0 complex, subunit A)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf15047g00005.1	gb|KEH27263.1|	*-*-	substrate carrier family protein [Medicago truncatula]		
Niben101Scf05183g02002.1	emb|CDY17891.1|	***-	BnaC04g03280D [Brassica napus]		
Niben101Scf04663g04004.1	sp|A5UYW4|DNAJ_ROSS1	***-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf03257g01008.1	sp|Q9C652|RBP1_ARATH	*-**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03971g00002.1	AT1G13920.1	*-*-	Remorin family protein LENGTH=345	IPR005516 (Remorin, C-terminal)	
Niben101Scf00270g03014.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08516g00008.1	sp|Q08435|PMA1_NICPL	****	Plasma membrane ATPase 1	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane)
Niben101Scf06814g01019.1	sp|Q2KIN1|DPM2_BOVIN	***-	Dolichol phosphate-mannose biosynthesis regulatory protein	IPR009914 (Dolichol phosphate-mannose biosynthesis regulatory)	GO:0009059 (macromolecule biosynthetic process), GO:0030176 (integral component of endoplasmic reticulum membrane)
Niben101Scf01611g13010.1			Unknown protein	IPR005513 (Late embryogenesis abundant protein, LEA-25/LEA-D113)	GO:0009790 (embryo development)
Niben101Scf00509g00002.1			Unknown protein		
Niben101Scf21699g00002.1	AT2G43970.1	*-**	RNA-binding protein LENGTH=545	IPR002344 (Lupus La protein), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0006396 (RNA processing), GO:0030529 (ribonucleoprotein complex)
Niben101Scf02319g12008.1	sp|Q942D4|BURP3_ORYSJ	*-*-	BURP domain-containing protein 3	IPR004873 (BURP domain)	
Niben101Scf05234g00012.1	AT3G45670.1	***-	Protein kinase superfamily protein LENGTH=379	IPR011009 (Protein kinase-like domain)	
Niben101Scf04191g04030.1	AT1G27180.1	***-	disease resistance protein (TIR-NBS-LRR class), putative LENGTH=1556	IPR000157 (Toll/interleukin-1 receptor homology (TIR) domain), IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR003591 (Leucine-rich repeat, typical subtype), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0043531 (ADP binding)
Niben101Scf01623g01027.1	sp|O49006|PME3_ARATH	*-**	Pectinesterase/pectinesterase inhibitor 3	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf06077g00010.1	sp|Q06327|LOX1_ARATH	*-*-	Linoleate 9S-lipoxygenase 1	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04724g04005.1	sp|Q9ZZ45|NU4M_SQUAC	*-*-	NADH-ubiquinone oxidoreductase chain 4	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf01166g07001.1	sp|Q93ZH0|LYM1_ARATH	***-	LysM domain-containing GPI-anchored protein 1	IPR018392 (LysM domain)	
Niben101Scf12516g01001.1			Unknown protein	IPR003656 (Zinc finger, BED-type)	GO:0003677 (DNA binding)
Niben101Scf00082g07001.1	sp|Q8VY89|APC7_ARATH	*-*-	Anaphase-promoting complex subunit 7	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00332g02013.1	emb|CDY66906.1|	***-	BnaC05g52250D [Brassica napus]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf04785g00002.1	sp|Q9P0L0|VAPA_HUMAN	*-**	Vesicle-associated membrane protein-associated protein A	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf01855g00004.1	sp|P14903|FSPM_SOLLC	-**-	Fruit-specific protein		
Niben101Scf08357g01008.1	ref|NP_566133.1|	****	rib [Arabidopsis thaliana]	IPR008195 (Ribosomal protein L34Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03634g08015.1	sp|O06967|BMRA_BACSU	*-**	Multidrug resistance ABC transporter ATP-binding/permease protein BmrA	IPR003439 (ABC transporter-like), IPR004021 (HIN-200/IF120x), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf01001g06011.1	sp|O80340|ERF78_ARATH	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00271g05023.1	ref|NP_001048383.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf01475g00021.1	AT5G05890.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=455	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf16439g00003.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf07824g00003.1	sp|Q8SVT3|HD5_ENCCU	--*-	Homeobox protein HD-5	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf08516g02004.1	sp|Q9FLS0|FB253_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf09345g00013.1	sp|B9DNJ9|DNAJ_STACT	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf23814g00016.1	sp|O65819|H2B3_SOLLC	***-	Histone H2B.3	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf01326g04010.1	AT5G39820.1	*-*-	NAC domain containing protein 94 LENGTH=337	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01313g06004.1			Unknown protein		
Niben101Scf04752g00007.1	sp|E4UZP9|SUB2_ARTGP	*-*-	Subtilisin-like protease 2	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04568g01007.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00819g01008.1	sp|Q39096|ERD15_ARATH	*-*-	Protein EARLY RESPONSIVE TO DEHYDRATION 15		
Niben101Scf08535g03001.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00745g03016.1	sp|B7URL9|MAO1_ECO27	****	NAD-dependent malic enzyme	IPR001891 (Malic oxidoreductase)	GO:0004470 (malic enzyme activity), GO:0004471 (malate dehydrogenase (decarboxylating) (NAD+) activity), GO:0006108 (malate metabolic process), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg16232g00003.1	emb|CDY14706.1|	*-*-	BnaC05g19630D [Brassica napus]	IPR007679 (Protein of unknown function DUF569), IPR008999 (Actin cross-linking)	
Niben101Scf11899g00003.1	gb|KEH31355.1|	***-	stress up-regulated Nod 19 protein [Medicago truncatula]	IPR011692 (Stress up-regulated Nod 19)	
Niben101Scf02148g00001.1	sp|B5VKE8|SDHL_YEAS6	*-*-	L-serine dehydratase	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme)	GO:0006520 (cellular amino acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf06545g03015.1	sp|Q9ZVH4|CUL3A_ARATH	****	Cullin-3A	IPR001373 (Cullin, N-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf01493g00007.1	AT1G76130.1	****	alpha-amylase-like 2 LENGTH=413	IPR015902 (Glycoside hydrolase, family 13)	GO:0003824 (catalytic activity), GO:0004556 (alpha-amylase activity), GO:0005509 (calcium ion binding), GO:0005975 (carbohydrate metabolic process), GO:0043169 (cation binding)
Niben101Scf08305g00002.1			Unknown protein		
Niben101Scf06840g00018.1	sp|Q8S8V2|YCF2A_ATRBE	*-*-	Protein Ycf2 A	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf00175g03003.1	ref|YP_009030169.1|	-**-	site-specific RNA endonuclease [Serratia phage PS2] gb|AHY25368.1| site-specific RNA endonuclease [Serratia phage PS2]		
Niben101Scf00231g07013.1	sp|Q6FYD1|SUCC_BARQU	***-	Succinyl-CoA ligase [ADP-forming] subunit beta	IPR013650 (ATP-grasp fold, succinyl-CoA synthetase-type), IPR016102 (Succinyl-CoA synthetase-like)	GO:0005524 (ATP binding)
Niben101Scf17514g00013.1	sp|Q9C652|RBP1_ARATH	****	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00023g01002.1			Unknown protein		
Niben101Scf14939g01022.1	AT2G34350.1	***-	Nodulin-like / Major Facilitator Superfamily protein LENGTH=525	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf10232g00003.1	sp|P81391|MYB05_ANTMA	*-*-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07725g00004.1	sp|Q9LUE2|TPS18_ARATH	***-	Terpenoid synthase 18	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	
Niben101Scf08192g00003.1	sp|Q8LEU3|NOL_ARATH	--*-	Chlorophyll(ide) b reductase NOL, chloroplastic		
Niben101Scf08804g01010.1			Unknown protein	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf03291g00003.1	sp|P34094|PHYB_SOLTU	***-	Phytochrome B	IPR001294 (Phytochrome), IPR005467 (Signal transduction histidine kinase, core), IPR029016 (GAF domain-like)	GO:0000155 (phosphorelay sensor kinase activity), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0007165 (signal transduction), GO:0009584 (detection of visible light), GO:0009585 (red, far-red light phototransduction), GO:0009881 (photoreceptor activity), GO:0016020 (membrane), GO:0017006 (protein-tetrapyrrole linkage), GO:0018298 (protein-chromophore linkage), GO:0042803 (protein homodimerization activity)
Niben101Scf12560g00004.1	sp|Q9T096|YIPL6_ARATH	***-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf02523g00008.1	AT5G04250.1	*-*-	Cysteine proteinases superfamily protein LENGTH=345	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf01190g02018.1	sp|P41437|IAP3_NPVOP	--*-	E3 ubiquitin-protein ligase IAP-3	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005515 (protein binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008270 (zinc ion binding)
Niben101Scf03056g02014.1	sp|O48818|EXPA4_ARATH	***-	Expansin-A4	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf02085g24006.1	AT5G01700.2	***-	Protein phosphatase 2C family protein LENGTH=382	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf01469g05003.1			Unknown protein		
Niben101Scf00868g03005.1	AT1G45976.1	****	S-ribonuclease binding protein 1 LENGTH=325	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017066 (S-ribonuclease binding protein, SBP1, pollen)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05378g03012.1	sp|Q1XDF9|FTSH_PYRYE	*-*-	ATP-dependent zinc metalloprotease FtsH	IPR006311 (Twin-arginine translocation pathway, signal sequence)	
Niben101Scf16439g00004.1	sp|A3CT12|RS8_METMJ	***-	30S ribosomal protein S8	IPR000630 (Ribosomal protein S8)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04607g01003.1	sp|P51823|ARF2_ORYSJ	***-	ADP-ribosylation factor 2	IPR003579 (Small GTPase superfamily, Rab type), IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf05950g00001.1	sp|P10708|CB12_SOLLC	***-	Chlorophyll a-b binding protein 7, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf08643g02001.1			Unknown protein		
Niben101Scf05177g02002.1	sp|Q6C186|CLF1_YARLI	*-*-	Pre-mRNA-splicing factor CLF1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Scf09953g00020.1	gb|AFV66579.1|	*-*-	LSG [Saccharum hybrid cultivar]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf04436g15047.1	sp|Q9FIX3|PP407_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02039g04009.1	sp|Q9SF32|IQD1_ARATH	*-*-	Protein IQ-DOMAIN 1	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf00149g06015.1	sp|O80452|AMPD_ARATH	****	AMP deaminase	IPR006329 (AMP deaminase)	GO:0003876 (AMP deaminase activity), GO:0009168 (purine ribonucleoside monophosphate biosynthetic process), GO:0019239 (deaminase activity), GO:0032264 (IMP salvage)
Niben101Scf15723g00016.1	ref|XP_002516114.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF46116.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04117g05003.1	sp|O23174|SLU7B_ARATH	--*-	Pre-mRNA-splicing factor SLU7-B	IPR021715 (Pre-mRNA splicing Prp18-interacting factor)	
Niben101Scf10188g05005.1	ref|XP_002525771.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF36607.1| conserved hypothetical protein [Ricinus communis]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf06170g00010.1	sp|Q9JID6|ACSL1_CAVPO	***-	Long-chain-fatty-acid--CoA ligase 1	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf06840g00016.1	sp|Q8S8V2|YCF2A_ATRBE	*-*-	Protein Ycf2 A	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf02105g01018.1	sp|Q9SH27|LOR4_ARATH	***-	Protein LURP-one-related 4	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf01124g18002.1	sp|P16373|ZFP59_MOUSE	--*-	Zinc finger protein 59	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR029789 (Protein TRANSPARENT TESTA 1 like)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf02659g02001.1	sp|Q9FMP8|RGAP6_ARATH	*-*-	Rho GTPase-activating protein 6	IPR008936 (Rho GTPase activation protein), IPR011993 (Pleckstrin homology-like domain)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf10122g01010.1	AT3G26950.1	***-	unknown protein; Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=548		
Niben101Scf21560g00002.1	sp|Q6Q3H3|TPSGD_VITVI	*-**	(-)-germacrene D synthase	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf05645g06007.1	sp|B6SGC5|CNR6_MAIZE	***-	Cell number regulator 6	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf00539g06028.1	sp|P54001|P4HA1_RAT	*-*-	Prolyl 4-hydroxylase subunit alpha-1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00006g00003.1	AT1G07020.1	***-	unknown protein; Has 39 Blast hits to 39 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 3; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). LENGTH=147		
Niben101Scf01001g02003.1	sp|Q41558|HBP1C_WHEAT	*-*-	Transcription factor HBP-1b(c1)		
Niben101Scf00757g05003.1	sp|Q9S823|LNG2_ARATH	***-	Protein LONGIFOLIA 2	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf08918g02014.1	AT5G03990.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=302		
Niben101Scf07824g00001.1	AT4G32400.1	***-	Mitochondrial substrate carrier family protein LENGTH=392	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf03004g01018.1	sp|F4JSZ5|BIG1_ARATH	****	Brefeldin A-inhibited guanine nucleotide-exchange protein 1	IPR000904 (Sec7 domain), IPR016024 (Armadillo-type fold), IPR023394 (Sec7 domain, alpha orthogonal bundle)	GO:0005086 (ARF guanyl-nucleotide exchange factor activity), GO:0005488 (binding), GO:0032012 (regulation of ARF protein signal transduction)
Niben101Scf10388g02025.1	sp|Q6ZMY6|WDR88_HUMAN	*-*-	WD repeat-containing protein 88	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf04021g02003.1	sp|Q9XJ60|MAD50_ORYSJ	****	MADS-box transcription factor 50	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06738g02013.1	emb|CDY06105.1|	*-*-	BnaA09g36750D [Brassica napus]		
Niben101Ctg13861g00002.1	sp|Q43309|1A14_ARATH	***-	1-aminocyclopropane-1-carboxylate synthase 4	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03987g00011.1	ref|NP_001105793.1|	***-	alkaline alpha galactosidase 1 [Zea mays] alkaline alpha galactosidase 1 [Zea mays]	IPR008811 (Glycosyl hydrolases 36), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf08566g06001.1	ref|XP_007042979.1|	*-*-	Dentin sialoph -related, putative isoform 3 [Theobroma cacao]		
Niben101Scf04223g01002.1	sp|Q01761|CSP7_STRC2	--*-	Cold shock-like protein 7.0	IPR001878 (Zinc finger, CCHC-type), IPR002059 (Cold-shock protein, DNA-binding), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf07182g04006.1	sp|Q9FG35|TBR_ARATH	--*-	Protein trichome birefringence		
Niben101Scf09696g01118.1	sp|A9L9D7|RK2_LEMMI	--*-	50S ribosomal protein L2, chloroplastic	IPR003557 (Cytochrome c-type biogenesis protein CcmC), IPR013025 (Ribosomal protein L25/L23), IPR014722 (Ribosomal protein L2 domain 2)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf01681g04005.1	AT1G74040.1	*-*-	2-isopropylmalate synthase 1 LENGTH=631	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf03661g01002.1	AT4G01070.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf07895g04007.1	dbj|BAF49520.1|	*-*-	N-methylputrescine oxidase [Nicotiana tabacum]		
Niben101Scf01639g01003.1	AT4G14720.1	***-	TIFY domain/Divergent CCT motif family protein LENGTH=315	IPR010399 (Tify)	
Niben101Scf00885g14013.1	sp|Q9C7S7|ERO1_ARATH	****	Endoplasmic reticulum oxidoreductin-1	IPR007266 (Endoplasmic reticulum oxidoreductin 1)	GO:0003756 (protein disulfide isomerase activity), GO:0005783 (endoplasmic reticulum), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf02290g02009.1	gb|KFV93691.1|	***-	UPF0369 protein C6orf57, partial [Fulmarus glacialis]	IPR012875 (Protein of unknown function DUF1674)	
Niben101Scf11493g00004.1	sp|Q41073|NLTP_PINTA	--**	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf02289g10016.1	sp|Q2QS14|UGDH4_ORYSJ	****	UDP-glucose 6-dehydrogenase 4	IPR017476 (UDP-glucose/GDP-mannose dehydrogenase)	GO:0003979 (UDP-glucose 6-dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01892g02015.1	sp|A0R5C5|GALE_MYCS2	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005888 (dTDP-glucose 4,6-dehydratase), IPR029903 (RmlD-like substrate binding domain)	GO:0003824 (catalytic activity), GO:0008460 (dTDP-glucose 4,6-dehydratase activity), GO:0009225 (nucleotide-sugar metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf24848g00002.1	emb|CDY47860.1|	***-	BnaCnng15560D [Brassica napus]	IPR008511 (Protein BYPASS-related)	
Niben101Scf00442g05004.1	sp|Q9FZ96|PUP1_ARATH	***-	Purine permease 1	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf00046g05006.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05890g02028.1	gb|AAP53948.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]		
Niben101Scf06822g01006.1	sp|O23140|AP2M_ARATH	****	AP-2 complex subunit mu	IPR001392 (Clathrin adaptor, mu subunit), IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf04122g00020.1	sp|Q6P829|NOSIP_XENTR	***-	Nitric oxide synthase-interacting protein	IPR016818 (Nitric oxide synthase-interacting), IPR027799 (Replication termination factor 2, RING-finger)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00152g03022.1	sp|Q9HAE3|EFCB1_HUMAN	--**	EF-hand calcium-binding domain-containing protein 1	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf04126g05026.1	sp|Q6VVA6|HAK1_ORYSJ	*-**	Potassium transporter 1	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf26075g00016.1	AT2G34210.1	****	Transcription elongation factor Spt5 LENGTH=989	IPR008991 (Translation protein SH3-like domain), IPR017071 (Transcription elongation factor Spt5)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006355 (regulation of transcription, DNA-templated), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0006412 (translation), GO:0032784 (regulation of DNA-templated transcription, elongation)
Niben101Scf04052g01018.1	gb|ABU50826.1|	*-*-	GAGA-binding transcriptional activator [Arabidopsis arenosa]	IPR010409 (GAGA-binding transcriptional activator)	
Niben101Scf07226g08002.1	AT4G01070.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf09367g00015.1			Unknown protein		
Niben101Scf01634g06009.1	ref|XP_007028707.1|	-**-	MICAL C-terminal-like protein, putative [Theobroma cacao] gb|EOY09209.1| MICAL C-terminal-like protein, putative [Theobroma cacao]		
Niben101Scf05588g06007.1	sp|Q56YN8|SMC3_ARATH	***-	Structural maintenance of chromosomes protein 3	IPR003395 (RecF/RecN/SMC, N-terminal), IPR010935 (SMCs flexible hinge), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029685 (Structural maintenance of chromosomes protein 3)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0006281 (DNA repair), GO:0007064 (mitotic sister chromatid cohesion), GO:0008280 (cohesin core heterodimer), GO:0051276 (chromosome organization)
Niben101Scf02059g00008.1	sp|Q566M8|RN150_DANRE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03856g01002.1	ref|XP_007022439.1|	***-	ARM repeat superfamily protein isoform 2 [Theobroma cacao] gb|EOY13964.1| ARM repeat superfamily protein isoform 2 [Theobroma cacao]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02289g05016.1	sp|O65874|MTF1_PEA	*-*-	MADS-box transcription factor 1	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf02358g00003.1	ref|NP_191672.1|	****	alpha-1,4-galacturon [Arabidopsis thaliana] emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gb|AHL38722.1| glycosyltransferase, partial [Arabidopsis thaliana]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf05439g02053.1			Unknown protein		
Niben101Scf00552g00002.1	AT1G79740.1	***-	hAT transposon superfamily LENGTH=651	IPR007021 (Domain of unknown function DUF659), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf03862g03013.1	sp|B7LM76|ARNA_ESCF3	*-*-	Bifunctional polymyxin resistance protein ArnA	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf04872g00002.1			Unknown protein		
Niben101Scf01731g02001.1	sp|Q84W04|CNIH4_ARATH	***-	Protein cornichon homolog 4	IPR003377 (Cornichon)	GO:0016020 (membrane), GO:0035556 (intracellular signal transduction)
Niben101Scf03634g01014.1	gb|EMT31861.1|	****	IAA-amino acid hydrolase ILR1-like protein 8 [Aegilops tauschii]	IPR002933 (Peptidase M20)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf04993g01010.1	sp|A8A8W3|RS4_IGNH4	****	30S ribosomal protein S4	IPR001912 (Ribosomal protein S4/S9, N-terminal), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0006412 (translation), GO:0015935 (small ribosomal subunit), GO:0019843 (rRNA binding)
Niben101Scf09378g00011.1	sp|Q9XHP0|11S2_SESIN	*-*-	11S globulin seed storage protein 2	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf01782g03013.1	sp|Q2KIL7|R3HD4_BOVIN	***-	R3H domain-containing protein 4	IPR001374 (Single-stranded nucleic acid binding R3H), IPR025952 (R3H-associated N-terminal domain)	GO:0003676 (nucleic acid binding)
Niben101Scf03971g00003.1			Unknown protein		
Niben101Scf01582g12004.1			Unknown protein		
Niben101Scf05151g00011.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02008g00014.1	sp|O60870|KIN17_HUMAN	*-*-	DNA/RNA-binding protein KIN17		
Niben101Scf04528g12009.1	AT5G48150.1	***-	GRAS family transcription factor LENGTH=490	IPR005202 (Transcription factor GRAS)	
Niben101Scf06457g00017.1	sp|Q9LYZ9|PP362_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf11980g03009.1	AT1G71070.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=395	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf01992g01011.1	AT5G54370.1	***-	Late embryogenesis abundant (LEA) protein-related LENGTH=337	IPR009646 (Root cap)	
Niben101Scf00758g07002.1	sp|G2K265|CLPB_LISM4	*-*-	Chaperone protein ClpB	IPR004176 (Clp, N-terminal), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0019538 (protein metabolic process)
Niben101Scf01683g17011.1	sp|Q3UHA3|SPTCS_MOUSE	--*-	Spatacsin	IPR028103 (Spatacsin)	
Niben101Scf04518g00014.1	sp|Q9STF0|LRKS3_ARATH	****	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13938g00003.1			Unknown protein		
Niben101Scf02709g00005.1	sp|Q8L9P8|RLF33_ARATH	***-	Protein RALF-like 33	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf00289g03009.1	AT5G02810.1	*-*-	pseudo-response regulator 7 LENGTH=727	IPR010402 (CCT domain)	GO:0005515 (protein binding)
Niben101Scf03308g02016.1	sp|Q8LG88|TDT_ARATH	****	Tonoplast dicarboxylate transporter	IPR001898 (Sodium/sulphate symporter)	GO:0005215 (transporter activity), GO:0006814 (sodium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf31499g00002.1	sp|P51960|MYBA_MOUSE	*-*-	Myb-related protein A	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03306g00002.1	AT2G19160.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=394	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf02790g05011.1	sp|Q17LR9|MED20_AEDAE	--**	Mediator of RNA polymerase II transcription subunit 20	IPR013921 (Mediator complex, subunit Med20)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf00963g04009.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf07926g00006.1	sp|Q9NQG5|RPR1B_HUMAN	*-*-	Regulation of nuclear pre-mRNA domain-containing protein 1B	IPR006569 (CID domain), IPR008942 (ENTH/VHS)	
Niben101Scf00140g01005.1	AT4G39860.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=299	IPR025131 (Domain of unknown function DUF4057)	
Niben101Scf00344g04009.1	ref|XP_002515874.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46543.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02358g02011.1	ref|WP_030795695.1|	***-	phosphohistidine phosphatase [Streptomyces sp. NRRL F-5008]	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf00465g07009.1	ref|XP_003621771.1|	*-*-	F-box family protein [Medicago truncatula]	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02351g06003.1			Unknown protein		
Niben101Scf27305g00021.1	AT5G63610.1	****	cyclin-dependent kinase E;1 LENGTH=470	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08309g00009.1	AT1G53210.1	*-**	sodium/calcium exchanger family protein / calcium-binding EF hand family protein LENGTH=585	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf14429g00007.1	AT2G14820.1	***-	Phototropic-responsive NPH3 family protein LENGTH=634	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain), IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0005515 (protein binding), GO:0009958 (positive gravitropism)
Niben101Scf02249g04007.1	sp|Q5RC80|RBM39_PONAB	--**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03023g02007.1	sp|Q58DW6|RAB25_BOVIN	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00739g02003.1	sp|Q5ZLX5|ZRAB2_CHICK	--**	Zinc finger Ran-binding domain-containing protein 2	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf00309g05011.1	sp|Q2V3I3|EPFL4_ARATH	*-*-	EPIDERMAL PATTERNING FACTOR-like protein 4		
Niben101Scf05469g00004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01153g00013.1	sp|O82200|MIOX2_ARATH	****	Inositol oxygenase 2	IPR007828 (Inositol oxygenase)	GO:0005506 (iron ion binding), GO:0005737 (cytoplasm), GO:0019310 (inositol catabolic process), GO:0050113 (inositol oxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05683g00013.1			Unknown protein		
Niben101Scf03376g01009.1	AT2G42005.1	***-	Transmembrane amino acid transporter family protein LENGTH=413	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf01870g09001.1	AT4G08570.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=150	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf07623g01047.1			Unknown protein		
Niben101Scf00600g00004.1	emb|CDX67475.1|	***-	BnaA07g15150D [Brassica napus]	IPR026797 (HAUS augmin-like complex subunit 6), IPR028163 (HAUS augmin-like complex subunit 6, N-terminal)	GO:0051225 (spindle assembly), GO:0051297 (centrosome organization), GO:0070652 (HAUS complex)
Niben101Scf00436g10003.1	sp|Q9LQQ4|H2B1_ARATH	***-	Histone H2B.1	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf11037g00006.1	sp|P46423|GSTF_HYOMU	***-	Glutathione S-transferase	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	
Niben101Scf04283g03006.1			Unknown protein		
Niben101Scf03503g00017.1	AT1G76060.1	***-	LYR family of Fe/S cluster biogenesis protein LENGTH=157	IPR008011 (Complex 1 LYR protein)	
Niben101Scf04284g00020.1	sp|Q5NBP9|GLU2B_ORYSJ	*-*-	Glucosidase 2 subunit beta		
Niben101Scf13683g01003.1	dbj|BAB11196.1|	--*-	mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf01813g00016.1	sp|Q9SXB8|Y1133_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain)	GO:0048544 (recognition of pollen)
Niben101Scf38847g00004.1	sp|Q6UX53|MET7B_HUMAN	--**	Methyltransferase-like protein 7B	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf01908g02003.1	sp|P41098|RL34_TOBAC	***-	60S ribosomal protein L34	IPR008195 (Ribosomal protein L34Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03651g05005.1	AT3G10300.3	*-**	Calcium-binding EF-hand family protein LENGTH=335	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf08047g03020.1	sp|Q9FIA1|GDL87_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04703g11023.1	sp|P62302|RS13_SOYBN	***-	40S ribosomal protein S13	IPR000589 (Ribosomal protein S15), IPR012606 (Ribosomal protein S13/S15, N-terminal)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10015g02003.1	sp|Q42430|ZFP1_WHEAT	***-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf00055g00004.1			Unknown protein		
Niben101Scf37331g00004.1	AT3G54390.1	*-*-	sequence-specific DNA binding transcription factors LENGTH=296		
Niben101Scf04871g24014.1	sp|Q43469|SLD1_HELAN	****	Delta(8)-fatty-acid desaturase	IPR012171 (Fatty acid/sphingolipid desaturase)	GO:0005506 (iron ion binding), GO:0006629 (lipid metabolic process), GO:0006633 (fatty acid biosynthetic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg12867g00004.1	ref|XP_002519182.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF43046.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06387g02019.1			Unknown protein		
Niben101Scf09149g00001.1	ref|XP_002528612.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF33770.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02798g02003.1	sp|B8J1C7|NUON_DESDA	*-*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf13185g01010.1	ref|XP_003590809.1|	***-	Tetratricopeptide repeat protein 7B [Medicago truncatula] gb|AES61060.1| TPR 7B-like protein [Medicago truncatula]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf12045g06023.1	emb|CDX95033.1|	***-	BnaC05g06380D [Brassica napus]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf03015g06010.1			Unknown protein		
Niben101Scf01450g00005.1	ref|XP_003615152.1|	****	2-dehydro-3-deoxyphosphoheptonate aldolase (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase) [Medicago truncatula] gb|AES98110.1| phospho-2-dehydro-3-deoxyheptonate aldolase [Medicago truncatula]	IPR002480 (DAHP synthetase, class II)	GO:0003849 (3-deoxy-7-phosphoheptulonate synthase activity), GO:0009073 (aromatic amino acid family biosynthetic process)
Niben101Scf00372g05013.1	gb|AHI85713.1|	***-	stress-induced protein 8 [Capsicum annuum]		
Niben101Scf00761g04009.1	sp|Q9FZ03|MAN2_SOLLC	***-	Mannan endo-1,4-beta-mannosidase 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf12011g01005.1	emb|CDY07869.1|	*-*-	BnaC03g47530D [Brassica napus]		
Niben101Scf00611g07010.1	AT3G15220.1	*-**	Protein kinase superfamily protein LENGTH=690	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05107g00008.1	sp|Q9ESC8|AFF4_MOUSE	--*-	AF4/FMR2 family member 4		
Niben101Scf05628g01019.1	AT5G42870.1	*-*-	phosphatidic acid phosphohydrolase 2 LENGTH=930	IPR007651 (Lipin, N-terminal), IPR013209 (LNS2, Lipin/Ned1/Smp2), IPR023214 (HAD-like domain)	
Niben101Scf06089g00012.1	ref|WP_026719812.1|	****	Pheophorbide a oxygenase [Fischerella sp. PCC 9431]	IPR013626 (Pheophorbide a oxygenase), IPR017941 (Rieske [2Fe-2S] iron-sulphur domain)	GO:0010277 (chlorophyllide a oxygenase [overall] activity), GO:0016491 (oxidoreductase activity), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13017g00015.1	AT4G14368.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=1106	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013591 (Brevis radix (BRX) domain), IPR027988 (Transcription factor  BREVIS RADIX, N-terminal domain)	GO:0046872 (metal ion binding)
Niben101Scf04945g02004.1	sp|A5F635|GLO2_VIBC3	*-*-	Hydroxyacylglutathione hydrolase	IPR001279 (Beta-lactamase-like)	
Niben101Scf08007g02019.1	sp|P81898|PNAA_PRUDU	***-	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A	IPR021102 (Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A)	
Niben101Scf11199g00006.1	AT2G05940.1	****	Protein kinase superfamily protein LENGTH=462	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04845g00028.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf11312g01005.1	AT1G19110.1	***-	inter-alpha-trypsin inhibitor heavy chain-related LENGTH=754	IPR002035 (von Willebrand factor, type A)	
Niben101Scf01524g00019.1	sp|A9NEX8|NAGB_ACHLI	****	Glucosamine-6-phosphate deaminase	IPR006148 (Glucosamine/galactosamine-6-phosphate isomerase)	GO:0005975 (carbohydrate metabolic process), GO:0006098 (pentose-phosphate shunt), GO:0017057 (6-phosphogluconolactonase activity)
Niben101Scf00352g01001.1	ref|NP_001063158.1|	-**-	product [Oryza sativa Japonica Group]		
Niben101Scf02772g07002.1	AT1G67140.3	*-*-	HEAT repeat-containing protein LENGTH=2223	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01192g08003.1	sp|Q9FZ87|GH317_ARATH	*-*-	Indole-3-acetic acid-amido synthetase GH3.17	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf10157g01005.1	sp|Q9CWM4|PFD1_MOUSE	****	Prefoldin subunit 1	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex), GO:0051082 (unfolded protein binding)
Niben101Scf09560g02001.1	sp|O64769|POT11_ARATH	*-**	Potassium transporter 11	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf01141g04003.1	AT5G65380.1	*-*-	MATE efflux family protein LENGTH=486	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf06290g03008.1	sp|P34102|PK3_DICDI	*-**	Protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02461g02009.1	AT1G14920.1	*-*-	GRAS family transcription factor family protein LENGTH=533	IPR005202 (Transcription factor GRAS)	
Niben101Scf03448g03014.1			Unknown protein	IPR008502 (Prolamin-like domain)	
Niben101Scf05447g00009.1	AT3G58520.1	*-*-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=418	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf05575g01005.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf30418g00013.1	AT1G75270.1	***-	dehydroascorbate reductase 2 LENGTH=213	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf08039g03004.1			Unknown protein	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf23114g00002.1	sp|P68362|TBA1A_CRIGR	*-*-	Tubulin alpha-1A chain	IPR000217 (Tubulin)	GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0007017 (microtubule-based process)
Niben101Scf16532g01001.1	sp|O82139|CAS1_PANGI	***-	Cycloartenol Synthase	IPR018333 (Squalene cyclase)	GO:0016866 (intramolecular transferase activity)
Niben101Scf05469g02013.1	emb|CDY43324.1|	***-	BnaC03g58960D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf11261g02006.1	AT5G19090.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=587	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf11126g02001.1	sp|Q9SXZ2|FT_ARATH	***-	Protein FLOWERING LOCUS T	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf09334g02002.1	ref|XP_003620991.1|	--*-	Histone H4 [Medicago truncatula]	IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf01718g01024.1	sp|Q5ZML6|F210A_CHICK	--*-	Protein FAM210A	IPR009688 (Domain of unknown function DUF1279)	
Niben101Scf02014g00019.1	gb|KEH25615.1|	****	TatD-related deoxyribonuclease [Medicago truncatula]	IPR001130 (TatD family)	GO:0016888 (endodeoxyribonuclease activity, producing 5'-phosphomonoesters)
Niben101Scf10055g01006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02793g06004.1	sp|Q7XJE6|MCA1_ARATH	*-*-	Metacaspase-1	IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf09861g01008.1			Unknown protein		
Niben101Scf06583g01004.1	gb|KDE06327.1|	--*-	BUB protein kinase [Microbotryum violaceum p1A1 Lamole]		
Niben101Scf00111g03006.1	AT3G44750.1	*-*-	histone deacetylase 3 LENGTH=245	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf02139g03005.1	sp|Q8LJT8|TKI1_ARATH	***-	TSL-kinase interacting protein 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07969g01019.1	AT3G50120.1	***-	Plant protein of unknown function (DUF247) LENGTH=531	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf00963g05013.1			Unknown protein		
Niben101Scf03264g03001.1	sp|Q08752|PPID_HUMAN	*-*-	Peptidyl-prolyl cis-trans isomerase D	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR011990 (Tetratricopeptide-like helical domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0005515 (protein binding), GO:0006457 (protein folding)
Niben101Scf01237g13015.1	sp|Q9Z9C4|SODM_CHLPN	****	Superoxide dismutase [Mn]	IPR001189 (Manganese/iron superoxide dismutase)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00854g04008.1			Unknown protein		
Niben101Scf00839g01010.1	sp|A7MFC3|MDTK_CROS8	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf06998g01015.1	sp|Q3SJW8|HTPG_THIDA	--*-	Chaperone protein HtpG		
Niben101Scf08675g00020.1	gb|ADM26560.1|	***-	nuclear localized protein 1 [Nicotiana benthamiana]	IPR028045 (Protein of unknown function DUF4539)	
Niben101Scf02455g01009.1	AT3G18430.1	****	Calcium-binding EF-hand family protein LENGTH=175	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03789g01010.1			Unknown protein		
Niben101Scf02844g12012.1	AT1G60140.1	****	trehalose phosphate synthase LENGTH=861	IPR001830 (Glycosyl transferase, family 20), IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf02370g01002.1	sp|Q9FFK1|SYP31_ARATH	*-*-	Syntaxin-31	IPR010989 (t-SNARE)	GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf07031g00003.1	sp|Q9LZN0|ROGF7_ARATH	****	Rop guanine nucleotide exchange factor 7	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Ctg14071g00003.1	gb|KEH39334.1|	*-*-	pleckstrin-like (PH) and lipid-binding START domain protein [Medicago truncatula]		
Niben101Scf02203g05013.1	ref|XP_002528523.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF33835.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07250g00002.1	sp|Q2TA10|UB2D1_BOVIN	***-	Ubiquitin-conjugating enzyme E2 D1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf07044g03012.1	AT3G14270.1	*-**	phosphatidylinositol-4-phosphate 5-kinase family protein LENGTH=1791	IPR002423 (Chaperonin Cpn60/TCP-1), IPR002498 (Phosphatidylinositol-4-phosphate 5-kinase, core), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0044267 (cellular protein metabolic process), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf03224g04002.1	AT5G48930.1	****	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase LENGTH=433	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf16068g00007.1	sp|B5F4U8|RPPH_SALA4	-**-	RNA pyrophosphohydrolase	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf07838g00012.1	gb|AES73140.2|	*-*-	BEACH domain LvsC-like protein, putative [Medicago truncatula]		
Niben101Ctg15370g00004.1	AT5G24380.1	*-*-	YELLOW STRIPE like 2 LENGTH=664	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf03853g02005.1	sp|P29000|INVA_SOLLC	****	Acid beta-fructofuranosidase	IPR001362 (Glycoside hydrolase, family 32), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021792 (Beta-fructofuranosidase), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004564 (beta-fructofuranosidase activity), GO:0004575 (sucrose alpha-glucosidase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00820g07012.1	sp|Q9M2Z5|FBL53_ARATH	***-	F-box/LRR-repeat protein		
Niben101Scf02752g13003.1			Unknown protein		
Niben101Scf02216g00007.1	ref|XP_002528790.1|	*-**	protein binding protein, putative [Ricinus communis] gb|EEF33612.1| protein binding protein, putative [Ricinus communis]	IPR003169 (GYF)	GO:0005515 (protein binding)
Niben101Scf08578g00002.1	sp|Q5D7J1|TRIM5_PANTR	*-*-	Tripartite motif-containing protein 5	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf04007g07003.1	sp|A5F0U5|RLMC_VIBC3	--**	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	IPR001202 (WW domain), IPR019012 (RNA cap guanine-N2 methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0001510 (RNA methylation), GO:0005515 (protein binding), GO:0008168 (methyltransferase activity), GO:0009452 (7-methylguanosine RNA capping)
Niben101Ctg15489g00001.1	sp|Q15631|TSN_HUMAN	--*-	Translin	IPR002848 (Translin)	GO:0043565 (sequence-specific DNA binding)
Niben101Scf03619g03004.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03863g03006.1			Unknown protein		
Niben101Scf00568g04023.1	sp|P18663|RK2A_SOYBN	****	50S ribosomal protein L2-A, chloroplastic	IPR002171 (Ribosomal protein L2)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit), GO:0016740 (transferase activity)
Niben101Scf10384g02016.1			Unknown protein		
Niben101Ctg15555g00001.1	sp|Q13492|PICAL_HUMAN	*-**	Phosphatidylinositol-binding clathrin assembly protein	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf02159g01026.1	sp|A5F587|MSRA_VIBC3	*-**	Peptide methionine sulfoxide reductase MsrA	IPR002569 (Peptide methionine sulphoxide reductase MsrA), IPR028427 (Peptide methionine sulfoxide reductase)	GO:0006979 (response to oxidative stress), GO:0008113 (peptide-methionine (S)-S-oxide reductase activity), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0030091 (protein repair), GO:0055114 (oxidation-reduction process)
Niben101Scf02253g02001.1			Unknown protein		
Niben101Scf15579g00001.1	emb|CDX73119.1|	*-*-	BnaC06g35670D [Brassica napus]		
Niben101Scf04384g03005.1	sp|P12543|TBA_PLAYO	***-	Tubulin alpha chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf09172g00001.1	AT1G01390.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf08228g04010.1	ref|NP_563854.1|	--*-	DNA polymerase delta subunit 4 [Arabidopsis thaliana] gb|ABF59014.1| [Arabidopsis thaliana] gb|AEE28498.1| DNA polymerase delta subunit 4 [Arabidopsis thaliana]		
Niben101Scf06008g00001.1	sp|Q9SD82|RFA1B_ARATH	****	Replication protein A 70 kDa DNA-binding subunit B	IPR004591 (Replication factor A protein 1)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0006310 (DNA recombination)
Niben101Scf03494g03009.1	sp|Q9M1V2|SOT5_ARATH	*-**	Cytosolic sulfotransferase 5	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf05957g00002.1			Unknown protein		
Niben101Scf05110g00013.1	AT4G30420.1	*-**	nodulin MtN21 /EamA-like transporter family protein LENGTH=373	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01203g02002.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00687g06009.1	sp|Q9SSF9|PP123_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00747g00004.1	sp|B3Q042|RL34_RHIE6	*-*-	50S ribosomal protein L34	IPR000271 (Ribosomal protein L34)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf11465g00008.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04196g00001.1	sp|Q9M884|MPI1_ARATH	****	Mannose-6-phosphate isomerase 1	IPR001250 (Mannose-6-phosphate isomerase, type I)	GO:0004476 (mannose-6-phosphate isomerase activity), GO:0005975 (carbohydrate metabolic process), GO:0008270 (zinc ion binding), GO:0009298 (GDP-mannose biosynthetic process)
Niben101Scf02531g02001.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02237g04009.1	AT5G27330.1	***-	Prefoldin chaperone subunit family protein LENGTH=628		
Niben101Scf00747g02021.1	AT3G14010.1	***-	CTC-interacting domain 4 LENGTH=595	IPR009604 (LsmAD domain), IPR025852 (Ataxin 2, SM domain)	
Niben101Scf05697g04004.1	AT5G04550.1	***-	Protein of unknown function (DUF668) LENGTH=599	IPR007700 (Protein of unknown function DUF668), IPR021864 (Protein of unknown function DUF3475)	
Niben101Scf04001g02005.1	sp|B4JUE4|PURA_DROGR	****	Adenylosuccinate synthetase	IPR001114 (Adenylosuccinate synthetase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004019 (adenylosuccinate synthase activity), GO:0005525 (GTP binding), GO:0006164 (purine nucleotide biosynthetic process)
Niben101Scf01756g00015.1	gb|KAK47643.1|	*-*-	glycosyl transferase [Burkholderia sp. MP-1]	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf02964g00008.1	AT3G23710.1	***-	Tic22-like family protein LENGTH=313	IPR007378 (Tic22-like)	
Niben101Scf04812g00002.1	AT2G35490.1	***-	Plastid-lipid associated protein PAP / fibrillin family protein LENGTH=376	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf00402g00003.1			Unknown protein		
Niben101Scf01655g02024.1	AT3G61320.1	***-	Bestrophin-like protein LENGTH=410	IPR021134 (Bestrophin/UPF0187), IPR024701 (Uncharacterised conserved protein, UCP016988)	
Niben101Scf11037g02051.1	sp|B9MQH1|EFTU_CALBD	*-**	Elongation factor Tu	IPR004541 (Translation elongation factor EFTu/EF1A, bacterial/organelle), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006414 (translational elongation)
Niben101Scf17858g00004.1	sp|Q8VYR4|CSLG2_ARATH	*-**	Cellulose synthase-like protein G2	IPR005150 (Cellulose synthase)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf04702g08001.1	AT3G26330.1	***-	cytochrome P450, family 71, subfamily B, polypeptide 37 LENGTH=500	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11734g01006.1	ref|WP_019258082.1|	*-*-	membrane protein [Bacillus subtilis]	IPR008537 (Protein of unknown function DUF819)	
Niben101Scf01464g00003.1	AT5G22875.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=69		
Niben101Scf01942g08004.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07725g01004.1	sp|Q9LUE2|TPS18_ARATH	***-	Terpenoid synthase 18	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	
Niben101Scf05108g00002.1	AT3G59080.1	***-	Eukaryotic aspartyl protease family protein LENGTH=535	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04379g01004.1	AT1G32740.1	****	SBP (S-ribonuclease binding protein) family protein LENGTH=312	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017066 (S-ribonuclease binding protein, SBP1, pollen)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04506g04004.1	sp|Q06327|LOX1_ARATH	***-	Linoleate 9S-lipoxygenase 1	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg14453g00002.1	AT1G02100.3	*-**	Leucine carboxyl methyltransferase LENGTH=332	IPR007213 (Leucine carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf00983g05001.1	AT4G28720.1	*-*-	Flavin-binding monooxygenase family protein LENGTH=426		
Niben101Scf39449g00005.1	sp|Q9AXT8|CMT1_MAIZE	****	DNA (cytosine-5)-methyltransferase 1	IPR001025 (Bromo adjacent homology (BAH) domain), IPR001525 (C-5 cytosine methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003682 (chromatin binding), GO:0008168 (methyltransferase activity)
Niben101Scf18308g01003.1	sp|Q6ZCX3|FH6_ORYSJ	*-*-	Formin-like protein 6	IPR000008 (C2 domain), IPR015425 (Formin, FH2 domain), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0005515 (protein binding)
Niben101Scf02160g01003.1	AT1G73805.1	***-	Calmodulin binding protein-like LENGTH=451	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf22432g00001.1	sp|P37064|ASO_CUCPM	***-	L-ascorbate oxidase	IPR017760 (L-ascorbate oxidase, plants)	GO:0005507 (copper ion binding), GO:0005576 (extracellular region), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02720g00003.1	dbj|BAB13710.1|	***-	elicitor resposible protein [Nicotiana tabacum] gb|AAS55699.1| TCIP [Nicotiana tabacum]		
Niben101Scf05239g01004.1	sp|F4IAT2|THOC2_ARATH	*-*-	THO complex subunit 2	IPR021726 (THO complex, subunitTHOC2, N-terminal)	
Niben101Scf03460g07026.1	sp|Q9UXR9|DNAJ_METTE	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf03848g09003.1	sp|A0RY01|RS13_CENSY	***-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH), IPR027437 (30s ribosomal protein S13, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Ctg10208g00001.1	sp|O82011|HSP11_SOLPE	*-*-	17.7 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf11778g01017.1	AT5G22510.1	***-	alkaline/neutral invertase LENGTH=617	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf02538g06008.1	sp|P0AFI1|OXC_ECO57	***-	Oxalyl-CoA decarboxylase	IPR011766 (Thiamine pyrophosphate enzyme, C-terminal TPP-binding), IPR012001 (Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain), IPR029035 (DHS-like NAD/FAD-binding domain), IPR029061 (Thiamin diphosphate-binding fold)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0030976 (thiamine pyrophosphate binding)
Niben101Scf02822g10011.1	sp|Q5XEY7|PP309_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf00110g02006.1	AT3G53440.1	*-*-	Homeodomain-like superfamily protein LENGTH=512	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf02738g07001.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf03822g00015.1	sp|Q3E7I6|GDL11_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf05749g02021.1	AT4G33920.1	***-	Protein phosphatase 2C family protein LENGTH=380	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf05535g02002.1	sp|Q9M0G7|PXL2_ARATH	--*-	Leucine-rich repeat receptor-like protein kinase PXL2		
Niben101Scf00980g00005.1	sp|Q9FZ96|PUP1_ARATH	***-	Purine permease 1	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf11689g02005.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03924g01007.1	gb|AAU93590.2|	*-*-	Late blight resistance protein, putative [Solanum demissum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf02338g00006.1	AT5G26030.1	****	ferrochelatase 1 LENGTH=466	IPR001015 (Ferrochelatase)	GO:0004325 (ferrochelatase activity), GO:0006783 (heme biosynthetic process)
Niben101Scf03925g02025.1			Unknown protein		
Niben101Scf02406g04011.1	emb|CDX89679.1|	***-	BnaC03g45930D [Brassica napus]		
Niben101Scf01052g01002.1	sp|A0M5Z9|SYM_GRAFK	*-**	Methionine--tRNA ligase	IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0000049 (tRNA binding), GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation)
Niben101Scf02929g06129.1	sp|Q54JC8|PUR4_DICDI	*-*-	Phosphoribosylformylglycinamidine synthase	IPR016188 (PurM, N-terminal-like)	GO:0003824 (catalytic activity)
Niben101Scf04716g00013.1	gb|AEB37490.1|	*-*-	TB1-like TCP family transcription factor [Helianthus annuus]	IPR005333 (Transcription factor, TCP)	
Niben101Scf04773g00018.1			Unknown protein		
Niben101Scf07493g04001.1	AT5G42830.1	****	HXXXD-type acyl-transferase family protein LENGTH=450	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04634g00004.1	AT5G64740.1	****	cellulose synthase 6 LENGTH=1084	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf00978g05004.1	sp|P0CM87|COX19_CRYNB	***-	Cytochrome c oxidase assembly protein COX19	IPR010625 (CHCH)	
Niben101Scf02151g04017.1			Unknown protein		
Niben101Scf06113g00022.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR002781 (Transmembrane protein TauE like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0016021 (integral component of membrane), GO:0043531 (ADP binding)
Niben101Scf02853g05018.1	sp|B2JIP4|SAHH_BURP8	*-**	Adenosylhomocysteinase	IPR000043 (Adenosylhomocysteinase), IPR016040 (NAD(P)-binding domain)	GO:0004013 (adenosylhomocysteinase activity), GO:0006730 (one-carbon metabolic process)
Niben101Scf01619g00017.1	sp|Q91Z38|TTC1_MOUSE	*-*-	Tetratricopeptide repeat protein 1	IPR000270 (Phox/Bem1p), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02031g01004.1	sp|Q8YLN2|MIAA_NOSS1	--*-	tRNA dimethylallyltransferase		
Niben101Scf13962g01003.1			Unknown protein		
Niben101Scf08679g00011.1	gb|ABS79582.1|	***-	At3g32930-like protein [Arabidopsis lyrata subsp. petraea]		
Niben101Scf10122g00006.1	emb|CDY50065.1|	***-	BnaCnng18720D [Brassica napus]		
Niben101Scf01557g01005.1	AT3G44820.1	***-	Phototropic-responsive NPH3 family protein LENGTH=651	IPR027356 (NPH3 domain)	
Niben101Scf03660g01005.1	sp|P13940|LEA29_GOSHI	--*-	Late embryogenesis abundant protein D-29		
Niben101Scf00033g05002.1	sp|Q10Q07|NNJA1_ORYSJ	*-*-	Ninja-family protein	IPR012463 (Ninja)	
Niben101Scf02700g02011.1	sp|Q8LEQ0|RLA13_ARATH	*-*-	60S acidic ribosomal protein P1-3	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf02785g02014.1	sp|P15621|ZNF44_HUMAN	*-*-	Zinc finger protein 44	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR029789 (Protein TRANSPARENT TESTA 1 like)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf03927g01006.1			Unknown protein		
Niben101Scf03853g01003.1	sp|Q9SU40|SKU5_ARATH	***-	Monocopper oxidase-like protein SKU5	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02160g06062.1	sp|A4IJK0|RL5_GEOTN	-**-	50S ribosomal protein L5	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07518g01001.1	sp|Q9SI52|P4KG7_ARATH	***-	Phosphatidylinositol 4-kinase gamma 7	IPR000403 (Phosphatidylinositol 3-/4-kinase, catalytic domain)	GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf03156g01013.1	ref|XP_010103716.1|	--*-	Sentrin-specific protease 1 [Morus notabilis] gb|EXB96858.1| Sentrin-specific protease 1 [Morus notabilis]		
Niben101Scf03695g01008.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08447g09002.1			Unknown protein		
Niben101Scf10064g00013.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf06990g00019.1	sp|Q9JKN6|NOVA1_MOUSE	*-**	RNA-binding protein Nova-1	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf01300g02011.1	AT2G16890.2	***-	UDP-Glycosyltransferase superfamily protein LENGTH=478	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf09906g02023.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04331g04008.1	sp|Q60864|STIP1_MOUSE	*-*-	Stress-induced-phosphoprotein 1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06814g01018.1	sp|P93654|SYP22_ARATH	***-	Syntaxin-22	IPR010989 (t-SNARE)	GO:0005515 (protein binding), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf11706g00010.1	sp|Q9FE67|ERF80_ARATH	*-**	Ethylene-responsive transcription factor 9	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03766g10010.1	AT5G47750.1	****	D6 protein kinase like 2 LENGTH=586	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07127g00003.1	sp|Q9UBX3|DIC_HUMAN	***-	Mitochondrial dicarboxylate carrier	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf07275g01007.1	sp|Q10137|SEC14_SCHPO	***-	Sec14 cytosolic factor	IPR001251 (CRAL-TRIO domain)	
Niben101Scf02296g00015.1			Unknown protein		
Niben101Scf02500g01002.1	ref|WP_025925378.1|	--*-	MULTISPECIES: hypothetical protein [Prochlorococcus]	IPR003832 (Acid phosphatase/vanadium-dependent haloperoxidase-related)	
Niben101Scf04082g00008.1	AT1G04220.1	***-	3-ketoacyl-CoA synthase 2 LENGTH=528	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf15836g00006.1	sp|Q9ZTX9|ARFD_ARATH	****	Auxin response factor 4	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf01188g00004.1	gb|KEH37282.1|	*-*-	mTERF protein [Medicago truncatula]		
Niben101Scf00447g02008.1	sp|P56331|IF1A_ONOVI	****	Eukaryotic translation initiation factor 1A	IPR001253 (Translation initiation factor 1A (eIF-1A))	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf06357g03002.1	AT5G44380.1	****	FAD-binding Berberine family protein LENGTH=541	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09854g02010.1	sp|Q84WU2|UBP13_ARATH	*-*-	Ubiquitin carboxyl-terminal hydrolase 13		
Niben101Ctg14336g00001.1	ref|XP_007031341.1|	***-	KANADI like transcription factor, putative isoform 2 [Theobroma cacao] gb|EOY02267.1| KANADI like transcription factor, putative isoform 2 [Theobroma cacao]		
Niben101Scf05234g00011.1	gb|KFB84379.1|	*-*-	multidrug MFS transporter [Calothrix sp. 336/3]	IPR010099 (Epimerase family protein SDR39U1)	
Niben101Scf14587g00001.1	sp|Q0WWQ1|ATG3_ARATH	***-	Autophagy-related protein 3	IPR007134 (Autophagy-related protein 3, N-terminal), IPR007135 (Autophagy-related protein 3)	
Niben101Scf10095g02017.1	sp|P43102|UBC4_CANAX	***-	Ubiquitin-conjugating enzyme E2 4	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf00991g03001.1	emb|CDY02105.1|	***-	BnaA03g40620D [Brassica napus]		
Niben101Scf00445g00004.1	sp|Q7G8Y5|GRXC1_ORYSJ	*-*-	Glutaredoxin-C1	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00344g04008.1	sp|F1NBT0|STK10_CHICK	*-**	Serine/threonine-protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01623g01028.1	sp|O24301|SUS2_PEA	*-**	Sucrose synthase 2	IPR012820 (Sucrose synthase, plant/cyanobacteria)	GO:0005985 (sucrose metabolic process), GO:0009058 (biosynthetic process), GO:0016157 (sucrose synthase activity)
Niben101Scf07438g02005.1	gb|KEH25554.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf07221g00001.1	sp|A9LYE2|RK2_ACOAM	*-**	50S ribosomal protein L2, chloroplastic	IPR002171 (Ribosomal protein L2), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit), GO:0016740 (transferase activity)
Niben101Scf00854g07062.1			Unknown protein		
Niben101Ctg15582g00001.1	sp|Q93VM8|COPT5_ARATH	****	Copper transporter 5	IPR007274 (Ctr copper transporter)	GO:0005375 (copper ion transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0035434 (copper ion transmembrane transport)
Niben101Scf00698g02008.1	sp|Q0PGJ6|AKRC9_ARATH	-***	Aldo-keto reductase family 4 member C9	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03069g04014.1	gb|AES64121.2|	--*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf00618g01003.1	gb|AAF66825.1|	--*-	poly(A)-binding protein [Nicotiana tabacum]		
Niben101Scf01443g00004.1	AT3G13780.1	***-	SMAD/FHA domain-containing protein LENGTH=309	IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf11130g00001.1	sp|Q8LDQ4|TAP46_ARATH	***-	PP2A regulatory subunit TAP46	IPR007304 (TAP42-like protein)	GO:0009966 (regulation of signal transduction)
Niben101Scf02620g00020.1	sp|Q9SZL9|CSLD4_ARATH	****	Cellulose synthase-like protein D4	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf01991g00012.1			Unknown protein		
Niben101Scf00878g03001.1	sp|Q660Y4|EFG1_BORGA	****	Elongation factor G 1	IPR004540 (Translation elongation factor EFG/EF2), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006414 (translational elongation)
Niben101Scf06846g01004.1	sp|Q84TE6|NAC22_ARATH	*-*-	NAC domain-containing protein 21/22	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06258g00019.1	sp|F4I1T7|NP214_ARATH	*-*-	Nuclear pore complex protein NUP214		
Niben101Scf09628g02004.1	ref|NP_849739.1|	****	inactive poly [ADP-rib [Arabidopsis thaliana] gb|AEE31453.1| inactive poly [ADP-ribose] polymerase RCD1 [Arabidopsis thaliana]	IPR004170 (WWE domain), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR022003 (RST domain of plant C-terminal)	GO:0003950 (NAD+ ADP-ribosyltransferase activity)
Niben101Scf03080g01014.1	gb|AAF00075.2|AF094825_1	****	RNA-binding protein homolog [Brassica napus]	IPR009818 (Ataxin-2, C-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf00705g01006.1	AT1G14450.1	*-*-	NADH dehydrogenase (ubiquinone)s LENGTH=73	IPR012576 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3)	GO:0005739 (mitochondrion), GO:0005747 (mitochondrial respiratory chain complex I), GO:0022900 (electron transport chain)
Niben101Scf00777g02003.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00128g02005.1	ref|XP_007032367.1|	***-	Membrane lipoprotein, putative [Theobroma cacao] gb|EOY03293.1| Membrane lipoprotein, putative [Theobroma cacao]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf03373g01001.1	sp|P31826|YDDA_ECOLI	*-**	Inner membrane ABC transporter ATP-binding protein YddA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf01399g00019.1	ref|XP_007020806.1|	***-	SH3 domain-binding protein 1, putative [Theobroma cacao] gb|EOY12331.1| SH3 domain-binding protein 1, putative [Theobroma cacao]		
Niben101Scf03184g01008.1	gb|KEH32027.1|	--*-	replication protein A 70 kDa protein [Medicago truncatula]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf02059g00009.1	ref|XP_007013684.1|	***-	Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao] gb|EOY31303.1| Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]		
Niben101Scf15907g00015.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf01196g01002.1			Unknown protein		
Niben101Scf04487g06001.1	AT5G04250.1	***-	Cysteine proteinases superfamily protein LENGTH=345	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf04067g04004.1	ref|XP_007018745.1|	--*-	RNA-directed DNA polymerase, putative [Theobroma cacao] gb|EOY15970.1| RNA-directed DNA polymerase, putative [Theobroma cacao]		
Niben101Scf05555g00012.1	sp|D8QNI1|CSPLH_SELML	***-	CASP-like protein 5A1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf09368g00004.1	gb|AAK20906.1|	--*-	plastid-targeted protein 2 [Craterostigma plantagineum]		
Niben101Scf03595g13001.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf09854g00004.1	emb|CDU16465.1|	--*-	conserved Plasmodium protein, unknown function [Plasmodium yoelii]		
Niben101Scf02547g00007.1	sp|Q2V3R1|FB346_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01190g04009.1	sp|Q8HYX6|FKB1B_RABIT	--*-	Peptidyl-prolyl cis-trans isomerase FKBP1B	IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	
Niben101Scf09544g01028.1	sp|Q8GYX8|DNJ10_ARATH	***-	Chaperone protein dnaJ 10	IPR001623 (DnaJ domain), IPR026894 (DNAJ-containing protein, X-domain)	
Niben101Scf04610g03015.1			Unknown protein		
Niben101Scf04753g00001.1	sp|O24301|SUS2_PEA	*-**	Sucrose synthase 2	IPR000368 (Sucrose synthase)	GO:0005985 (sucrose metabolic process)
Niben101Scf02602g01016.1	sp|O23144|PPI1_ARATH	****	Proton pump-interactor 1	IPR029669 (Proton pump-interactor)	GO:0005783 (endoplasmic reticulum), GO:0005886 (plasma membrane), GO:0010155 (regulation of proton transport)
Niben101Scf04122g00021.1	sp|Q9M815|PCR8_ARATH	--*-	Protein PLANT CADMIUM RESISTANCE 8	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf08538g00021.1	sp|O49213|FCL1_ARATH	****	GDP-L-fucose synthase 1	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain), IPR028614 (GDP-L-fucose synthase)	GO:0003824 (catalytic activity), GO:0042351 ('de novo' GDP-L-fucose biosynthetic process), GO:0050577 (GDP-L-fucose synthase activity), GO:0050662 (coenzyme binding)
Niben101Scf01689g05001.1	sp|Q945T0|RALF_TOBAC	***-	Rapid alkalinization factor	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf10940g05004.1	sp|Q5ZLW3|DYM_CHICK	***-	Dymeclin	IPR019142 (Dymeclin)	
Niben101Scf01837g00011.1	ref|WP_008361509.1|	--*-	4-hydroxyphenylpyruvate dioxygenase [Nocardioidaceae bacterium Broad-1] gb|EGD41752.1| putative 4-hydroxyphenylpyruvate dioxygenase [Nocardioidaceae bacterium Broad-1]		
Niben101Scf09695g00001.1	ref|XP_002519967.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF42415.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07113g00006.1	ref|XP_002514952.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF47506.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02523g00009.1	ref|WP_013413882.1|	****	arsenic transporter ATPase [Methanothermus fervidus] ref|YP_004004366.1| arsenite efflux ATP-binding protein arsa [Methanothermus fervidus DSM 2088] gb|ADP77604.1| arsenite efflux ATP-binding protein ArsA [Methanothermus fervidus DSM 2088]	IPR016300 (Arsenical pump ATPase, ArsA/GET3), IPR025723 (Anion-transporting ATPase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf14627g00004.1	sp|Q68FF9|S5A1_MOUSE	--*-	3-oxo-5-alpha-steroid 4-dehydrogenase 1	IPR010721 (Protein of unknown function DUF1295)	GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
Niben101Scf00509g00001.1	emb|CDX71650.1|	--*-	BnaC09g26910D [Brassica napus]		
Niben101Scf01635g00005.1			Unknown protein		
Niben101Scf03257g01007.1	gb|AES97132.2|	*-*-	DUF223 domain protein [Medicago truncatula]	IPR003871 (Domain of unknown function DUF223)	
Niben101Scf03914g00001.1	sp|Q7NJF7|GPMA2_GLOVI	*-*-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf11355g02004.1	gb|KEH30411.1|	*-*-	nucleotide-diphospho-sugar transferase family protein [Medicago truncatula]		
Niben101Scf04436g09001.1			Unknown protein		
Niben101Scf05444g07024.1	sp|P70343|CASP4_MOUSE	--*-	Caspase-4		
Niben101Scf05588g04008.1	ref|XP_002515860.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46529.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05012g01001.1	ref|XP_007042711.1|	--*-	NAD(P)-binding R isoform 4 [Theobroma cacao]		
Niben101Scf00454g05025.1	sp|C1KWN7|DER_LISMC	--*-	GTPase Der	IPR005688 (Chloroplast protein import component Toc34), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0006886 (intracellular protein transport), GO:0009707 (chloroplast outer membrane), GO:0015450 (P-P-bond-hydrolysis-driven protein transmembrane transporter activity)
Niben101Scf02111g11006.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf04283g01002.1	sp|Q67XQ0|Y4424_ARATH	***-	DUF21 domain-containing protein	IPR002550 (Domain of unknown function DUF21)	
Niben101Scf03488g04010.1	gb|ABI34369.1|	--*-	Late blight resistance protein, putative [Solanum demissum]		
Niben101Scf02340g03007.1	sp|Q0IIS3|EPHX3_XENTR	***-	Epoxide hydrolase 3	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf02002g01024.1	AT2G07771.2	****	Cytochrome C assembly protein LENGTH=256	IPR002541 (Cytochrome c assembly protein), IPR003557 (Cytochrome c-type biogenesis protein CcmC)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Ctg14959g00001.1			Unknown protein		
Niben101Scf04422g06002.1	AT3G11945.2	****	homogentisate prenyltransferase LENGTH=393	IPR000537 (UbiA prenyltransferase family)	GO:0004659 (prenyltransferase activity), GO:0016021 (integral component of membrane)
Niben101Scf00228g01003.1	sp|Q9LSE7|B561C_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR017214 (Uncharacterised conserved protein UCP037471)	GO:0016021 (integral component of membrane)
Niben101Scf01804g00027.1			Unknown protein		
Niben101Scf00887g01011.1			Unknown protein		
Niben101Scf00023g03015.1	sp|Q9FIA1|GDL87_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00470g06004.1	AT3G61610.1	***-	Galactose mutarotase-like superfamily protein LENGTH=317	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf03239g00007.1	sp|Q9SH60|PP103_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03245g00004.1	sp|Q39110|GAOX1_ARATH	***-	Gibberellin 20 oxidase 1	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf07792g00002.1			Unknown protein		
Niben101Scf00662g05005.1	AT1G27760.3	*-*-	interferon-related developmental regulator family protein / IFRD protein family LENGTH=441	IPR007701 (Interferon-related developmental regulator, N-terminal)	
Niben101Scf01166g07002.1	ref|XP_002513137.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF49640.1| conserved hypothetical protein [Ricinus communis]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Ctg11121g00004.1	sp|P46254|HS22M_PEA	--*-	Heat shock 22 kDa protein, mitochondrial	IPR008978 (HSP20-like chaperone)	
Niben101Scf00872g03004.1	sp|Q9H9D4|ZN408_HUMAN	--*-	Zinc finger protein 408	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR029789 (Protein TRANSPARENT TESTA 1 like)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf04018g12009.1			Unknown protein		
Niben101Scf04109g02007.1			Unknown protein		
Niben101Scf04819g03003.1	AT2G01570.1	*-*-	GRAS family transcription factor family protein LENGTH=587	IPR005202 (Transcription factor GRAS)	
Niben101Scf02997g02006.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00984g05001.1	sp|Q5ZIM5|MAP1_CHICK	*-**	Methionine aminopeptidase 1	IPR000994 (Peptidase M24, structural domain), IPR001714 (Peptidase M24, methionine aminopeptidase)	GO:0004177 (aminopeptidase activity), GO:0006508 (proteolysis), GO:0008235 (metalloexopeptidase activity)
Niben101Scf23013g00006.1	sp|O58994|ARLMC_PYRHO	*-**	23S rRNA (uracil(747)-C(5))-methyltransferase	IPR000571 (Zinc finger, CCCH-type), IPR010280 ((Uracil-5)-methyltransferase family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase), IPR030390 (RNA methyltransferase TrmA, active site)	GO:0006396 (RNA processing), GO:0008173 (RNA methyltransferase activity), GO:0046872 (metal ion binding)
Niben101Scf03431g00003.1	sp|Q8YAS7|PTC_LISMO	--*-	Putrescine carbamoyltransferase		
Niben101Scf02063g02014.1	sp|P10967|ACCH3_SOLLC	***-	1-aminocyclopropane-1-carboxylate oxidase homolog	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01518g00007.1	AT2G21720.1	*-*-	Plant protein of unknown function (DUF639) LENGTH=734	IPR006927 (Protein of unknown function DUF639)	
Niben101Scf04568g01006.1	sp|Q9ZUA5|VIT1_ARATH	***-	Vacuolar iron transporter 1	IPR008217 (Ccc1 family)	
Niben101Scf02486g08005.1	sp|Q6BVN0|PMP3_DEBHA	--**	Plasma membrane proteolipid 3	IPR000612 (Proteolipid membrane potential modulator)	GO:0016021 (integral component of membrane)
Niben101Scf01313g06005.1	sp|P50258|TBAD_PHYPO	***-	Tubulin alpha-1A chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf11137g00003.1	AT1G69080.1	*-*-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=223		
Niben101Scf00647g01009.1	AT4G31360.1	*-**	selenium binding LENGTH=186	IPR011893 (Selenoprotein, Rdx type)	GO:0008430 (selenium binding), GO:0045454 (cell redox homeostasis)
Niben101Scf01515g08009.1	emb|CEF67223.1|	--*-	Nipped-B-like protein [Strongyloides ratti]		
Niben101Scf00870g01012.1	gb|AET01951.2|	***-	K+-H+ exchange-like protein [Medicago truncatula]	IPR018786 (Protein of unknown function DUF2343)	
Niben101Scf03683g03011.1	sp|Q940S0|TMN2_ARATH	*-*-	Transmembrane 9 superfamily member 2	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf01718g09031.1	sp|Q9BWH6|RPAP1_HUMAN	*-*-	RNA polymerase II-associated protein 1	IPR013929 (RNA polymerase II-associated protein 1, C-terminal), IPR013930 (RNA polymerase II-associated protein 1, N-terminal), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04752g00008.1	sp|O04504|PPR27_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf36713g00003.1	sp|A4QLT3|PSAA_NASOF	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00175g03002.1	sp|Q6L8G0|ZIP5_ORYSJ	****	Zinc transporter 5	IPR003689 (Zinc/iron permease)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04506g01001.1	sp|O07948|NUOF_RHOCA	****	NADH-quinone oxidoreductase subunit F	IPR011538 (NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain), IPR019554 (Soluble ligand binding domain)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0010181 (FMN binding), GO:0051539 (4 iron, 4 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06545g03016.1	sp|Q32PE2|MOG1_BOVIN	***-	Ran guanine nucleotide release factor	IPR007681 (Ran-interacting Mog1 protein)	
Niben101Scf03375g01013.1	emb|CDX98387.1|	***-	BnaC06g17480D [Brassica napus]		
Niben101Scf00149g06014.1	AT3G13020.1	***-	hAT transposon superfamily protein LENGTH=605	IPR003656 (Zinc finger, BED-type), IPR007021 (Domain of unknown function DUF659), IPR008906 (HAT dimerisation domain, C-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Ctg14425g00002.1			Unknown protein		
Niben101Scf03937g01009.1	sp|Q8LEQ0|RLA13_ARATH	***-	60S acidic ribosomal protein P1-3	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf15047g00004.1	sp|B4SQT5|NUOB_STRM5	****	NADH-quinone oxidoreductase subunit B	IPR006138 (NADH-ubiquinone oxidoreductase, 20 Kd subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0048038 (quinone binding), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01837g03003.1	AT1G71090.1	*-*-	Auxin efflux carrier family protein LENGTH=457	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00526g02019.1	sp|Q9LQL2|PTR14_ARATH	***-	Protein NRT1/ PTR FAMILY 7.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf07152g04036.1	sp|Q49XV1|RNZ_STAS1	***-	Ribonuclease Z	IPR001279 (Beta-lactamase-like)	
Niben101Scf03809g02012.1	sp|O02467|ASPG_SPOFR	***-	N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase	IPR000246 (Peptidase T2, asparaginase 2), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0016787 (hydrolase activity)
Niben101Scf09552g01024.1	AT5G57610.1	*-*-	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain LENGTH=1054	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf00338g08012.1	sp|Q6ZPJ0|TEX2_MOUSE	*-*-	Testis-expressed sequence 2 protein	IPR019411 (Domain of unknown function DUF2404)	
Niben101Scf06295g03012.1	AT3G44850.1	****	Protein kinase superfamily protein LENGTH=534	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12560g00003.1	sp|Q9T095|OPT6_ARATH	***-	Oligopeptide transporter 6	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf04216g06004.1	sp|Q9FWX2|NAC7_ARATH	*-*-	NAC domain-containing protein 7	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03023g00001.1	AT2G33847.1	***-	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=93		
Niben101Scf01526g05004.1	gb|ABB72370.1|	-**-	seed maturation protein [Glycine tomentella]	IPR005513 (Late embryogenesis abundant protein, LEA-25/LEA-D113)	GO:0009790 (embryo development)
Niben101Scf02073g09008.1	sp|Q40704|MADS3_ORYSJ	****	MADS-box transcription factor 3	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf05890g02029.1	gb|ABA98502.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR018289 (MULE transposase domain)	
Niben101Scf25491g00001.1	AT4G36660.1	***-	Protein of unknown function (DUF1195) LENGTH=179	IPR010608 (Protein of unknown function DUF1195)	
Niben101Scf39366g00005.1	AT1G06050.1	*-*-	Protein of unknown function (DUF1336) LENGTH=313	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf02289g10015.1	sp|Q04002|SCC2_YEAST	*-*-	Sister chromatid cohesion protein 2	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold), IPR024986 (Sister chromatid cohesion C-terminal domain), IPR026003 (HEAT repeat associated with sister chromatid cohesion protein)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08448g00001.1	AT3G07500.1	***-	Far-red impaired responsive (FAR1) family protein LENGTH=217	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf02907g07012.1	AT4G38040.1	***-	Exostosin family protein LENGTH=425	IPR004263 (Exostosin-like)	
Niben101Scf12143g00007.1	sp|Q9SB61|ZHD2_ARATH	*-*-	Zinc-finger homeodomain protein 2	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain)	
Niben101Scf03250g00007.1	sp|Q8W234|SEUSS_ARATH	*-*-	Transcriptional corepressor SEUSS	IPR029005 (LIM-domain binding protein/SEUSS)	
Niben101Scf01297g04003.1	sp|D7LBN4|CSPLH_ARALL	***-	CASP-like protein 4B1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf00552g00001.1	ref|XP_007035984.1|	*-**	HAT dimerization domain-containing protein [Theobroma cacao] gb|EOY06910.1| HAT dimerization domain-containing protein [Theobroma cacao]	IPR008906 (HAT dimerisation domain, C-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0046983 (protein dimerization activity)
Niben101Scf09192g03002.1	ref|XP_003594396.1|	***-	F-box protein [Medicago truncatula]	IPR017451 (F-box associated interaction domain)	
Niben101Scf01374g06001.1	ref|XP_002515984.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46404.1| conserved hypothetical protein [Ricinus communis]		
Niben101Ctg10476g00001.1	emb|CBW30169.1|	***-	Conserved hypothetical protein [Musa balbisiana]		
Niben101Scf02289g05015.1	sp|Q9SAR1|MADS8_ORYSJ	*-**	MADS-box transcription factor 8	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05439g02054.1	gb|AAW30276.1|	****	cytochrome c biogenesis ccmF [Liriodendron tulipifera]	IPR002541 (Cytochrome c assembly protein), IPR003567 (Cytochrome c-type biogenesis protein)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf04052g01019.1	sp|Q9SIS3|MA656_ARATH	****	65-kDa microtubule-associated protein 6	IPR007145 (Microtubule-associated protein, MAP65/Ase1/PRC1)	GO:0000226 (microtubule cytoskeleton organization), GO:0000910 (cytokinesis), GO:0008017 (microtubule binding)
Niben101Scf03027g02011.1	AT1G78240.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=684	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf06840g00015.1	sp|Q27RY7|YCF2_SOLTU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf01269g12011.1	sp|P48368|CRTE_CYAPA	*-*-	Geranylgeranyl diphosphate synthase	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf01942g05016.1	AT1G11260.1	****	sugar transporter 1 LENGTH=522	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Ctg16073g00005.1	emb|CDY26857.1|	***-	BnaA02g18820D [Brassica napus]	IPR001202 (WW domain)	GO:0005515 (protein binding)
Niben101Scf03873g01016.1	sp|Q9SE45|ANXD3_ARATH	***-	Annexin D3	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf05134g00004.1	sp|Q8NXY8|CLPC_STAAW	*-**	ATP-dependent Clp protease ATP-binding subunit ClpC	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf18418g00007.1	AT1G51170.1	*-**	Protein kinase superfamily protein LENGTH=404	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04300g03003.1	sp|Q9M9W1|RL222_ARATH	***-	60S ribosomal protein L22-2	IPR002671 (Ribosomal protein L22e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00853g01012.1	gb|AES94526.2|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00662g00010.1	AT3G28740.1	***-	Cytochrome P450 superfamily protein LENGTH=509	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02709g00004.1	sp|Q9ZV04|PER24_ARATH	*-**	Peroxidase 24	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02459g10015.1	sp|Q9VP22|CDK12_DROME	*-**	Cyclin-dependent kinase 12	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06663g00015.1			Unknown protein		
Niben101Scf00858g06022.1	gb|ABF94497.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf09074g00005.1	AT2G01640.1	***-	unknown protein; Has 51 Blast hits to 51 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). LENGTH=156		
Niben101Scf02107g03005.1	sp|O64702|HMG14_ARATH	*-*-	High mobility group B protein 14	IPR009071 (High mobility group box domain)	
Niben101Scf15100g00016.1	sp|Q3SRD2|CLPP_NITWN	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf08357g01005.1	gb|AAU89193.1|	*-*-	transposon protein, putative, mutator sub-class [Oryza sativa Japonica Group]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf01959g06012.1	AT3G15420.1	***-	Transcription factor TFIIIC, tau55-related protein LENGTH=107	IPR019481 (Transcription factor TFIIIC, tau55-related)	
Niben101Scf00110g04020.1	AT3G62040.1	*-*-	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=249		
Niben101Scf03072g06018.1	sp|Q8QZY9|SF3B4_MOUSE	*-*-	Splicing factor 3B subunit 4	IPR006529 (U2 snRNP auxilliary factor, large subunit, splicing factor), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0006397 (mRNA processing)
Niben101Scf01752g08002.1			Unknown protein		
Niben101Scf02929g03005.1	ref|XP_002520077.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF42401.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04109g05006.1	sp|Q84UU9|TPS06_ARATH	*-**	Terpenoid synthase 6	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf03819g02007.1	sp|Q7XR02|IBH1_ORYSJ	--*-	Transcription factor IBH1		
Niben101Scf00152g02006.1			Unknown protein		
Niben101Scf05231g00001.1	sp|Q9LTV8|PP224_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf04704g00002.1	AT4G00700.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1006	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf05767g01002.1	dbj|BAB10527.1|	*-*-	low-temperature-induced 65 kD protein [Arabidopsis thaliana]		
Niben101Scf05102g07006.1			Unknown protein		
Niben101Scf09960g01014.1	AT4G32660.1	****	Protein kinase superfamily protein LENGTH=400	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02814g02014.1	AT2G45850.1	*-**	AT hook motif DNA-binding family protein LENGTH=348	IPR005175 (Domain of unknown function DUF296), IPR020478 (AT hook-like)	GO:0003677 (DNA binding)
Niben101Scf00175g02019.1	AT3G21760.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=485	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03661g01001.1	gb|AEK83106.1|	*-*-	At1g47750-like protein [Capsella grandiflora]	IPR008733 (Peroxisomal biogenesis factor 11)	GO:0005779 (integral component of peroxisomal membrane), GO:0016559 (peroxisome fission)
Niben101Scf01847g06001.1	ref|XP_002511068.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF51670.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00371g01007.1	gb|ACG36548.1|	***-	fiber protein Fb34 [Zea mays]	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf09696g01117.1	sp|Q3V534|PSAA_ACOCL	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf11312g01008.1	AT1G48480.1	****	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06435g02004.1	sp|P59467|LBD23_ARATH	***-	LOB domain-containing protein 23	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf09953g00021.1	sp|P56601|PPOX_MYXXA	***-	Protoporphyrinogen oxidase	IPR002937 (Amine oxidase), IPR027418 (Protoporphyrinogen oxidase, C-terminal domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02459g07011.1	AT4G19710.2	*-**	aspartate kinase-homoserine dehydrogenase ii LENGTH=916	IPR001341 (Aspartate kinase domain)	GO:0004072 (aspartate kinase activity), GO:0008652 (cellular amino acid biosynthetic process)
Niben101Scf06822g01005.1	sp|Q96NW7|LRRC7_HUMAN	*-*-	Leucine-rich repeat-containing protein 7	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf17787g00004.1	sp|A5PKH3|FAAA_BOVIN	****	Fumarylacetoacetase	IPR005959 (Fumarylacetoacetase), IPR011234 (Fumarylacetoacetase, C-terminal-related)	GO:0003824 (catalytic activity), GO:0004334 (fumarylacetoacetase activity), GO:0008152 (metabolic process), GO:0009072 (aromatic amino acid family metabolic process)
Niben101Scf08643g02002.1	AT3G52140.4	*-*-	tetratricopeptide repeat (TPR)-containing protein LENGTH=1419		
Niben101Scf00553g03008.1			Unknown protein		
Niben101Scf00442g05003.1	sp|Q9FZ96|PUP1_ARATH	--*-	Purine permease 1		
Niben101Scf11383g00027.1	AT1G54500.1	*-*-	Rubredoxin-like superfamily protein LENGTH=195	IPR004039 (Rubredoxin-type fold), IPR018527 (Rubredoxin, iron-binding site)	GO:0005506 (iron ion binding), GO:0046872 (metal ion binding)
Niben101Scf13868g00003.1	sp|Q6ZDF3|TRAB1_ORYSJ	--**	bZIP transcription factor TRAB1	IPR004827 (Basic-leucine zipper domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf11483g00009.1	AT3G23920.1	****	beta-amylase 1 LENGTH=575	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf03370g06007.1	AT5G06150.1	****	Cyclin family protein LENGTH=445	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf01203g01019.1	AT1G29200.2	***-	O-fucosyltransferase family protein LENGTH=611	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf01469g05004.1			Unknown protein		
Niben101Scf03930g00021.1	AT5G20190.1	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=290	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04861g00003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01823g00003.1	sp|A1TYH3|ERPA_MARHV	****	Iron-sulfur cluster insertion protein ErpA	IPR000361 (FeS cluster biogenesis), IPR016092 (FeS cluster insertion protein)	GO:0005198 (structural molecule activity), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf03963g00006.1	AT5G22850.1	***-	Eukaryotic aspartyl protease family protein LENGTH=493	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00383g01012.1			Unknown protein		
Niben101Scf09317g01009.1	sp|Q8RWU4|ATML1_ARATH	*-*-	Homeobox-leucine zipper protein MERISTEM L1		
Niben101Scf00091g00013.1	sp|Q8VZ37|AP3S_ARATH	****	AP-3 complex subunit sigma	IPR016635 (Adaptor protein complex, sigma subunit)	GO:0006810 (transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0030123 (AP-3 adaptor complex)
Niben101Scf00526g03005.1			Unknown protein	IPR017443 (Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf00447g01011.1	gb|KEH18748.1|	*-*-	intracellular protein transporter USO1-like protein, putative [Medicago truncatula]		
Niben101Scf00539g06029.1	ref|XP_003603823.1|	--*-	Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula]		
Niben101Scf03114g09012.1			Unknown protein		
Niben101Scf00104g03006.1	AT3G63340.2	*-**	Protein phosphatase 2C family protein LENGTH=1075	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf03099g00010.1	gb|AGN52025.1|	*-*-	MYB-related transcription factor [Salvia miltiorrhiza]	IPR017930 (Myb domain)	
Niben101Scf06928g00013.1	ref|YP_009091709.1|	***-	orf109 (mitochondrion) [Panax ginseng] gb|AHJ81034.1| orf109 (mitochondrion) [Panax ginseng]		
Niben101Scf04695g00006.1	sp|O04289|SUT32_ARATH	*-**	Sulfate transporter 3.2	IPR001902 (Sulphate anion transporter)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf08445g02025.1	gb|ACX55038.1|	*-*-	pG1 protein [Bacillus amyloliquefaciens]		
Niben101Scf01055g02011.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02085g00003.1	gb|KEH22373.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf08936g08003.1	sp|Q6DFF4|INT9_XENLA	--*-	Integrator complex subunit 9	IPR001279 (Beta-lactamase-like)	
Niben101Scf00527g06003.1	sp|Q5R9W4|OSBL9_PONAB	--*-	Oxysterol-binding protein-related protein 9		
Niben101Scf02228g02009.1			Unknown protein		
Niben101Scf03953g03001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00854g04007.1			Unknown protein		
Niben101Scf03385g02012.1	AT2G15220.1	***-	Plant basic secretory protein (BSP) family protein LENGTH=225	IPR007541 (Uncharacterised protein family, basic secretory protein)	
Niben101Scf01872g01004.1	sp|Q68FT1|COQ9_RAT	****	Ubiquinone biosynthesis protein COQ9, mitochondrial	IPR012762 (Ubiquinone biosynthesis protein COQ9)	GO:0006744 (ubiquinone biosynthetic process)
Niben101Scf08918g02015.1	AT5G13460.1	***-	IQ-domain 11 LENGTH=443	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf01172g11018.1			Unknown protein		
Niben101Scf04403g02003.1	sp|P92960|KAT3_ARATH	--*-	Potassium channel KAT3		
Niben101Scf02351g06002.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf09856g00001.1	AT1G11430.1	*-*-	plastid developmental protein DAG, putative LENGTH=232		
Niben101Scf10678g00004.1	sp|Q9SH26|PP102_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02922g02022.1	sp|Q5U231|ZFR_XENTR	*-**	Zinc finger RNA-binding protein	IPR003604 (Zinc finger, U1-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf17839g02005.1	sp|O48965|IDI2_CAMAC	****	Isopentenyl-diphosphate Delta-isomerase II	IPR011876 (Isopentenyl-diphosphate delta-isomerase, type 1), IPR015797 (NUDIX hydrolase domain-like)	GO:0004452 (isopentenyl-diphosphate delta-isomerase activity), GO:0008299 (isoprenoid biosynthetic process), GO:0016787 (hydrolase activity)
Niben101Scf00294g00013.1	sp|P0DI70|CSPL2_GINBI	***-	CASP-like protein 5A1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf01166g01028.1			Unknown protein		
Niben101Scf05146g04019.1	AT1G73460.1	****	Protein kinase superfamily protein LENGTH=1169	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04549g00002.1	AT5G60800.2	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=302	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf05037g00005.1	sp|B9S8Z3|CASP4_RICCO	***-	Casparian strip membrane protein 4	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf08609g01014.1	ref|XP_002512598.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF50050.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04007g07002.1	AT5G09890.2	****	Protein kinase family protein LENGTH=516	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06578g02010.1	sp|Q9SIT5|CHX15_ARATH	*-**	Cation/H(+) antiporter 15	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02761g02012.1	sp|P38389|SC61B_ARATH	*-*-	Protein transport protein Sec61 subunit beta	IPR016482 (Protein transport protein SecG/Sec61-beta/Sbh1)	
Niben101Scf01211g04015.1	sp|Q7V6S2|KPRS_PROMM	****	Ribose-phosphate pyrophosphokinase	IPR005946 (Ribose-phosphate diphosphokinase), IPR029057 (Phosphoribosyltransferase-like), IPR029099 (Ribose-phosphate pyrophosphokinase, N-terminal domain)	GO:0000287 (magnesium ion binding), GO:0004749 (ribose phosphate diphosphokinase activity), GO:0009156 (ribonucleoside monophosphate biosynthetic process), GO:0009165 (nucleotide biosynthetic process), GO:0044249 (cellular biosynthetic process)
Niben101Scf02249g04006.1	sp|Q8H7N9|ATL31_ORYSJ	--*-	E3 ubiquitin-protein ligase	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06738g00010.1	AT2G41660.1	***-	Protein of unknown function, DUF617 LENGTH=297	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf02772g07001.1	AT1G67140.3	*-*-	HEAT repeat-containing protein LENGTH=2223	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Ctg15966g00001.1	AT1G19170.1	***-	Pectin lyase-like superfamily protein LENGTH=506	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06967g02006.1			Unknown protein		
Niben101Scf07250g00001.1	sp|Q9EQH3|VPS35_MOUSE	***-	Vacuolar protein sorting-associated protein 35	IPR005378 (Vacuolar protein sorting-associated protein 35, Vps35), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0015031 (protein transport), GO:0030904 (retromer complex), GO:0042147 (retrograde transport, endosome to Golgi)
Niben101Scf06551g00011.1			Unknown protein		
Niben101Scf25231g00001.1	AT5G16010.1	***-	3-oxo-5-alpha-steroid 4-dehydrogenase family protein LENGTH=268	IPR001104 (3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal)	GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
Niben101Scf02929g01074.1			Unknown protein		
Niben101Scf03420g01001.1	ref|NP_001044734.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf08753g02023.1	sp|P32026|DEF_TOBAC	--*-	Defensin-like protein		
Niben101Scf03104g01004.1	AT3G10560.1	***-	Cytochrome P450 superfamily protein LENGTH=514	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04875g00015.1	gb|ACX55016.1|	*-*-	pG1 protein [Bacillus amyloliquefaciens]		
Niben101Scf00344g00002.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf02168g06007.1	tpg|DAA52047.1|	***-	TPA: hypothetical protein ZEAMMB73_362192 [Zea mays]	IPR012438 (Protein of unknown function DUF1639)	
Niben101Scf02635g04010.1	sp|Q7M443|CHIT2_TULBA	*-*-	Chitinase 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf01237g04021.1	sp|F4IH21|TBL33_ARATH	***-	Protein trichome birefringence-like 33	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf11738g00010.1	ref|WP_002811744.1|	****	aminopeptidase N [Nitrosococcus oceani] ref|YP_343342.1| aminopeptidase N [Nitrosococcus oceani ATCC 19707] gb|ABA57812.1| Peptidase M, neutral zinc metallopeptidase, zinc-binding site [Nitrosococcus oceani ATCC 19707] gb|EDZ68555.1| aminopeptidase N [Nitrosococcus oceani AFC27] gb|KFI19751.1| aminopeptidase N [Nitrosococcus oceani C-27]	IPR001930 (Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase), IPR024601 (Peptidase M1, alanyl aminopeptidase, C-terminal)	GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity), GO:0008270 (zinc ion binding)
Niben101Scf13683g01006.1			Unknown protein		
Niben101Scf01596g01015.1	sp|P07506|COX1_SOYBN	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10210g01003.1			Unknown protein		
Niben101Scf16793g00004.1	AT2G40710.1	*-**	Haemolysin-III related integral membrane protein LENGTH=93	IPR004254 (AdipoR/Haemolysin-III-related)	GO:0016021 (integral component of membrane)
Niben101Scf05709g01019.1	sp|A7FPA2|GHRB_YERP3	***-	Glyoxylate/hydroxypyruvate reductase B	IPR016040 (NAD(P)-binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1)	GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03695g01004.1	AT1G29760.1	***-	Putative adipose-regulatory protein (Seipin) LENGTH=526	IPR009617 (Adipose-regulatory protein, Seipin)	
Niben101Scf23114g00003.1	sp|P09644|TBA5_CHICK	*-*-	Tubulin alpha-5 chain	IPR000217 (Tubulin)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf05683g00016.1	sp|Q9SSM2|MDLL_ARATH	*-*-	(R)-mandelonitrile lyase-like		
Niben101Scf07201g01001.1	sp|Q9UTK8|GMT_SCHPO	-**-	GDP-mannose transporter	IPR004853 (Triose-phosphate transporter domain), IPR029665 (GDP-mannose transporter GONST3, plant)	GO:0005794 (Golgi apparatus), GO:0015780 (nucleotide-sugar transport)
Niben101Scf02060g03004.1	AT4G02930.1	*-**	GTP binding Elongation factor Tu family protein LENGTH=454	IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf12045g06022.1	gb|KGD89813.1|	***-	FAD-dependent oxidoreductase [Pseudomonas sp. YS-1p]		
Niben101Scf08065g00002.1	AT1G20930.1	****	cyclin-dependent kinase B2;2 LENGTH=315	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04643g01002.1			Unknown protein		
Niben101Scf01237g13016.1	sp|B4T2X8|YMDB_SALNS	***-	O-acetyl-ADP-ribose deacetylase	IPR002589 (Macro domain)	
Niben101Scf01018g02008.1	gb|KEO62215.1|	--*-	membrane protein [Borrelia garinii]		
Niben101Scf00149g12016.1	sp|Q2YT48|DNAJ_STAAB	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR012336 (Thioredoxin-like fold)	
Niben101Scf13000g04015.1	sp|P44933|KEFX_HAEIN	*-*-	Glutathione-regulated potassium-efflux system protein	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf11126g09009.1	sp|Q8GY97|CSTR2_ARATH	*-*-	CMP-sialic acid transporter 2		
Niben101Scf06280g06001.1	sp|Q9JII7|ZFN2A_MOUSE	***-	AN1-type zinc finger protein 2A	IPR000058 (Zinc finger, AN1-type)	
Niben101Scf06424g02013.1			Unknown protein		
Niben101Scf01258g01001.1	AT3G59470.1	***-	Far-red impaired responsive (FAR1) family protein LENGTH=251	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf00568g04024.1	sp|B1XJS6|RS8_SYNP2	*-*-	30S ribosomal protein S8	IPR000630 (Ribosomal protein S8)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01409g07004.1	sp|Q9FHH5|GDU3_ARATH	***-	Protein GLUTAMINE DUMPER 3		
Niben101Ctg00579g00001.1	sp|Q8LBW3|LBD12_ARATH	*-*-	LOB domain-containing protein 12	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf02752g13004.1	sp|Q9D417|FBX24_MOUSE	--*-	F-box only protein 24	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf13865g00004.1	sp|P23922.1|HBP1A_WHEAT	****	RecName: Full=Transcription factor HBP-1a; AltName: Full=Histone-specific transcription factor HBP1 [Triticum aestivum] pir||A41349 histone-specific transcription factor HBP1 - wheat emb|CAA40101.1| HBP-1a [Triticum aestivum] gb|AAA34293.1| DNA-binding protein [Triticum aestivum] dbj|BAA07289.1| transcription factor HBP-1a(17) [Triticum aestivum]	IPR004827 (Basic-leucine zipper domain), IPR012900 (G-box binding, MFMR)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02111g00008.1	sp|Q9ZWJ9|ARR2_ARATH	*-*-	Two-component response regulator ARR2	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding)
Niben101Scf01920g00011.1	sp|A7QEU4|PER5_VITVI	****	Peroxidase 5	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06290g03007.1	sp|P97377|CDK2_MOUSE	****	Cyclin-dependent kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00244g03017.1	AT2G38610.1	****	RNA-binding KH domain-containing protein LENGTH=286	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf04259g01016.1	sp|Q6CC70|EXO70_YARLI	*-**	Exocyst complex protein EXO70	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf05414g00004.1	sp|Q9SC19|UPTG1_SOLTU	***-	Alpha-1,4-glucan-protein synthase [UDP-forming] 1	IPR004901 (Reversibly glycosylated polypeptide family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016866 (intramolecular transferase activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf05896g00001.1	sp|Q8SSN5|NAA20_DICDI	****	N-alpha-acetyltransferase 20	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf02764g06001.1	sp|Q02002|TRPF_LACLA	****	N-(5'-phosphoribosyl)anthranilate isomerase	IPR001240 (N-(5'phosphoribosyl) anthranilate isomerase (PRAI) like domain), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004640 (phosphoribosylanthranilate isomerase activity), GO:0006568 (tryptophan metabolic process), GO:0008152 (metabolic process)
Niben101Scf01524g00018.1	gb|KFB85278.1|	*-*-	aldo/keto reductase [Calothrix sp. 336/3]	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf16148g01012.1	AT4G32920.1	***-	glycine-rich protein LENGTH=1432		
Niben101Scf10630g00001.1	AT3G22880.1	****	DNA repair (Rad51) family protein LENGTH=344	IPR016467 (DNA recombination and repair protein, RecA-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000166 (nucleotide binding), GO:0003677 (DNA binding), GO:0003684 (damaged DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0006281 (DNA repair), GO:0008094 (DNA-dependent ATPase activity)
Niben101Scf02321g00013.1	gb|AES86371.2|	***-	F-box protein interaction domain protein [Medicago truncatula]	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf00556g00004.1	sp|Q2HJH1|DNPEP_BOVIN	****	Aspartyl aminopeptidase	IPR001948 (Peptidase M18), IPR023358 (Peptidase M18, domain 2)	GO:0004177 (aminopeptidase activity), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding)
Niben101Scf01182g01029.1	sp|Q6YWQ4|HAK25_ORYSJ	****	Potassium transporter 25	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf00309g05012.1	sp|F6HDT7|MTND2_VITVI	****	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2	IPR004313 (Acireductone dioxygenase ARD family)	GO:0010309 (acireductone dioxygenase [iron(II)-requiring] activity), GO:0016491 (oxidoreductase activity), GO:0019509 (L-methionine biosynthetic process from methylthioadenosine), GO:0055114 (oxidation-reduction process)
Niben101Scf00152g03025.1	sp|Q6NSQ7|LTV1_MOUSE	***-	Protein LTV1 homolog		
Niben101Scf26477g00003.1	sp|Q0ABH3|RL23_ALKEH	--*-	50S ribosomal protein L23	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf09987g01004.1	ref|XP_002524242.1|	****	zinc ion binding protein, putative [Ricinus communis] gb|EEF38166.1| zinc ion binding protein, putative [Ricinus communis]	IPR001781 (Zinc finger, LIM-type), IPR022087 (Protein DA1 like)	GO:0008270 (zinc ion binding)
Niben101Scf07790g03022.1	sp|Q5BKY1|LRC10_HUMAN	*-*-	Leucine-rich repeat-containing protein 10	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR016024 (Armadillo-type fold), IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf01993g02002.1	ref|NP_001047044.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf01822g16001.1	emb|CCA15163.1|	*-*-	conserved hypothetical protein [Albugo laibachii Nc14]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf08271g00006.1			Unknown protein		
Niben101Scf01006g05005.1	sp|F4ISV6|THG2_ARATH	*-**	tRNA(His) guanylyltransferase 2	IPR007537 (tRNAHis guanylyltransferase Thg1), IPR025845 (Thg1 C-terminal domain)	GO:0000287 (magnesium ion binding), GO:0006400 (tRNA modification), GO:0008193 (tRNA guanylyltransferase activity)
Niben101Scf10161g00011.1	emb|CDY05369.1|	--*-	BnaC02g40770D [Brassica napus]		
Niben101Scf03944g03006.1	sp|Q9XE58|SCL14_ARATH	***-	Scarecrow-like protein 14	IPR005202 (Transcription factor GRAS)	
Niben101Scf08121g00003.1	sp|Q6N069|NAA16_HUMAN	***-	N-alpha-acetyltransferase 16, NatA auxiliary subunit	IPR021183 (N-terminal acetyltransferase A, auxiliary subunit)	GO:0005515 (protein binding)
Niben101Scf13002g02004.1	sp|Q6DFF7|KLH25_XENLA	*-*-	Kelch-like protein 25	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf01784g08006.1	AT1G75150.1	***-	unknown protein; Has 38228 Blast hits to 24529 proteins in 1168 species: Archae - 169; Bacteria - 4103; Metazoa - 14594; Fungi - 5866; Plants - 1861; Viruses - 317; Other Eukaryotes - 11318 (source: NCBI BLink). LENGTH=784		
Niben101Scf01001g02006.1	sp|Q9C9J0|LHTL5_ARATH	***-	Lysine histidine transporter-like 5	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf03200g01002.1	AT4G35240.1	***-	Protein of unknown function (DUF630 and DUF632) LENGTH=865	IPR006867 (Domain of unknown function DUF632)	
Niben101Scf00504g06004.1	ref|WP_026327536.1|	***-	glutamate formiminotransferase [Proteiniphilum acetatigenes]	IPR022384 (Formiminotransferase subdomain)	GO:0005542 (folic acid binding), GO:0008152 (metabolic process), GO:0016740 (transferase activity)
Niben101Scf10064g00011.1	sp|P61242|YCF2_SOLLC	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf03448g03015.1	ref|YP_009045802.1|	*-*-	orf101b (mitochondrion) [Batis maritima] gb|AIC83405.1| orf101b (mitochondrion) [Batis maritima]		
Niben101Scf04438g00003.1	sp|Q8DBG3|GLND_VIBVU	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf00212g03026.1	sp|Q9H2M9|RBGPR_HUMAN	*-**	Rab3 GTPase-activating protein non-catalytic subunit	IPR026059 (Rab3-GAP regulatory subunit)	GO:0043087 (regulation of GTPase activity)
Niben101Scf05469g00005.1	sp|Q69Q47|CIPKO_ORYSJ	****	CBL-interacting protein kinase 24	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03978g09016.1	sp|Q285L8|RS3A_TOBAC	*-*-	40S ribosomal protein S3a	IPR001593 (Ribosomal protein S3Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08137g02019.1	sp|P50134|DCOR_DATST	***-	Ornithine decarboxylase	IPR000183 (Ornithine/DAP/Arg decarboxylase), IPR029066 (PLP-binding barrel)	GO:0003824 (catalytic activity), GO:0006596 (polyamine biosynthetic process)
Niben101Ctg14130g00002.1	sp|Q62442|VAMP1_MOUSE	--**	Vesicle-associated membrane protein 1	IPR001388 (Synaptobrevin)	GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf06404g01005.1	sp|Q6L545|GID1_ORYSJ	***-	Gibberellin receptor GID1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf02215g01001.1	sp|O49817|LEA2_CICAR	--*-	Late embryogenesis abundant protein 2		
Niben101Scf00104g04008.1	gb|ABA95488.2|	*-*-	expressed protein [Oryza sativa Japonica Group]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf01025g05001.1	sp|Q7T3I7|RBM38_XENLA	*-**	RNA-binding protein 38	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf12903g01001.1	gb|AEI61928.1|	***-	DBP1-interacting protein 2 [Nicotiana tabacum]		
Niben101Scf07639g05013.1	ref|XP_007052413.1|	***-	Chloroplast, plasma membrane, plastid, chloroplast envelope, putative [Theobroma cacao] gb|EOX96570.1| Chloroplast, plasma membrane, plastid, chloroplast envelope, putative [Theobroma cacao]		
Niben101Scf06603g01016.1	ref|XP_002528690.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF33679.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03241g00002.1	AT5G10500.1	***-	Kinase interacting (KIP1-like) family protein LENGTH=848	IPR011684 (KIP1-like)	
Niben101Scf02002g04014.1	gb|KEH21834.1|	--*-	nuclear transport factor 2 (NTF2) family protein [Medicago truncatula]		
Niben101Scf09861g01009.1	sp|Q9C707|BH083_ARATH	*-*-	Transcription factor bHLH83	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01386g01003.1	sp|Q9LZJ3|XXT1_ARATH	***-	Xyloglucan 6-xylosyltransferase 1	IPR008630 (Galactosyl transferase)	GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03011g01016.1	ref|NP_001057631.1|	*-*-	product [Oryza sativa Japonica Group]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf33542g00004.1	sp|Q9C6W4|BGA15_ARATH	***-	Beta-galactosidase 15	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf02822g07004.1	sp|O04479|LBD6_ARATH	***-	LOB domain-containing protein 6	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf08578g00005.1	sp|B9SLR1|Y231_RICCO	***-	UPF0392 protein RCOM_0530710	IPR008166 (Domain of unknown function DUF23)	
Niben101Scf04411g01002.1	sp|E9PZM4|CHD2_MOUSE	*-**	Chromodomain-helicase-DNA-binding protein 2	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR020838 (DBINO domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides)
Niben101Scf14179g02004.1	sp|Q6C9R9|SFH5_YARLI	*-*-	Phosphatidylinositol transfer protein SFH5	IPR001251 (CRAL-TRIO domain), IPR009038 (GOLD), IPR011074 (CRAL/TRIO, N-terminal domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf01872g02005.1	emb|CDX96411.1|	***-	BnaA07g30220D [Brassica napus]		
Niben101Scf18308g00009.1	sp|Q69Q47|CIPKO_ORYSJ	****	CBL-interacting protein kinase 24	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02802g00024.1	sp|P43255|CSN8_ARATH	***-	COP9 signalosome complex subunit 8	IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf05107g00009.1	ref|WP_026720334.1|	***-	fibrillin [Fischerella sp. PCC 9431]	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf00718g00009.1	AT2G14820.1	***-	Phototropic-responsive NPH3 family protein LENGTH=634	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain), IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0005515 (protein binding), GO:0009958 (positive gravitropism)
Niben101Scf03927g01007.1			Unknown protein		
Niben101Scf03156g01010.1	sp|Q8LBW3|LBD12_ARATH	***-	LOB domain-containing protein 12	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf02405g04012.1	AT2G37390.1	***-	Chloroplast-targeted copper chaperone protein LENGTH=259		
Niben101Scf03266g05013.1	emb|CDX86616.1|	*-*-	BnaC08g00870D [Brassica napus]	IPR027902 (Protein of unknown function DUF4487)	
Niben101Scf02838g07003.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf00577g01006.1	sp|Q8TF05|PP4R1_HUMAN	*-*-	Serine/threonine-protein phosphatase 4 regulatory subunit 1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00372g05012.1	gb|AHI85713.1|	***-	stress-induced protein 8 [Capsicum annuum]		
Niben101Scf14427g00008.1	gb|AFI44305.1|	*-**	DNA polymerase (mitochondrion) [Silene vulgaris]	IPR004868 (DNA-directed DNA polymerase, family B, mitochondria/virus), IPR012337 (Ribonuclease H-like domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf04932g00016.1	sp|Q39265|ZFP6_ARATH	--*-	Zinc finger protein 6	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf06560g02033.1	sp|Q921Y2|IMP3_MOUSE	***-	U3 small nucleolar ribonucleoprotein protein IMP3	IPR001912 (Ribosomal protein S4/S9, N-terminal), IPR002942 (RNA-binding S4 domain), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding), GO:0005622 (intracellular), GO:0019843 (rRNA binding)
Niben101Scf03035g04012.1	sp|A1VEW4|HIS8_DESVV	****	Histidinol-phosphate aminotransferase	IPR021178 (Tyrosine transaminase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02650g01013.1	ref|XP_002530460.1|	*-**	transcription cofactor, putative [Ricinus communis] gb|EEF31930.1| transcription cofactor, putative [Ricinus communis]	IPR003101 (Coactivator CBP, KIX domain)	GO:0003712 (transcription cofactor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf15579g00002.1	ref|XP_007032367.1|	***-	Membrane lipoprotein, putative [Theobroma cacao] gb|EOY03293.1| Membrane lipoprotein, putative [Theobroma cacao]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf04113g17020.1	sp|Q0WPY0|TLP6_ARATH	***-	Tubby-like F-box protein 6	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf07826g04017.1	ref|XP_003616941.1|	*-*-	Receptor kinase [Medicago truncatula]	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Scf02468g06008.1			Unknown protein		
Niben101Scf02172g06018.1			Unknown protein		
Niben101Scf06613g03015.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01269g08007.1	sp|A6MZM2|SUI1_ORYSI	****	Protein translation factor SUI1 homolog	IPR005874 (Eukaryotic translation initiation factor SUI1)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf03814g00001.1	sp|Q9XGW1|AGO10_ARATH	***-	Protein argonaute 10	IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf05862g00016.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000742 (Epidermal growth factor-like domain), IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf12966g00006.1	sp|P55038|GLTS_SYNY3	*-**	Ferredoxin-dependent glutamate synthase 2	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0006537 (glutamate biosynthetic process), GO:0015930 (glutamate synthase activity), GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00592g07009.1	sp|H2DH18|C7A12_PANGI	***-	Cytochrome P450 CYP736A12	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08892g00011.1	AT1G70810.1	***-	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=165		
Niben101Scf06090g01003.1	emb|CDY29536.1|	--*-	BnaA03g53810D [Brassica napus]		
Niben101Scf06395g00004.1	AT1G03650.1	***-	Acyl-CoA N-acyltransferases (NAT) superfamily protein LENGTH=158		
Niben101Scf04231g00019.1	ref|NP_001190042.1|	--*-	protein RESPONSE TO LOW SULFUR 1 [Arabidopsis thaliana] gb|AEE78560.1| response to low sulfur 1 protein [Arabidopsis thaliana]		
Niben101Scf01795g13002.1	sp|Q3B724|CALS5_ARATH	*-*-	Callose synthase 5		
Niben101Scf10409g00006.1	AT4G32330.1	*-*-	TPX2 (targeting protein for Xklp2) protein family LENGTH=437	IPR027329 (TPX2, C-terminal domain)	
Niben101Scf01175g05011.1	sp|Q3SWX8|RBBP7_BOVIN	--**	Histone-binding protein RBBP7	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01623g04022.1	sp|Q7M1E7|PGLR2_CHAOB	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04196g00004.1	gb|ADK13069.1|	***-	conserved hypothetical protein 12 [Hevea brasiliensis]		
Niben101Scf03432g00012.1	sp|Q9FKC0|R13A4_ARATH	****	60S ribosomal protein L13a-4	IPR005822 (Ribosomal protein L13), IPR023563 (Ribosomal protein L13, conserved site), IPR023564 (Ribosomal protein L13 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf10064g00012.1	sp|A4GG97|PSAA_PHAVU	****	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf03030g01014.1			Unknown protein		
Niben101Scf00851g04008.1	ref|XP_002523935.1|	****	hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gb|EEF38422.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07015g00009.1	sp|A4FUD4|PEX12_BOVIN	*-**	Peroxisome assembly protein 12	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017375 (Peroxisome assembly protein 12)	GO:0005779 (integral component of peroxisomal membrane), GO:0006625 (protein targeting to peroxisome), GO:0008022 (protein C-terminus binding), GO:0008270 (zinc ion binding)
Niben101Scf07741g03005.1	sp|A2BN38|RS12_HYPBU	****	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf00318g11015.1	ref|XP_007026671.1|	*-*-	Transducin family protein / WD-40 repeat family protein, putative isoform 3 [Theobroma cacao] gb|EOY07173.1| Transducin family protein / WD-40 repeat family protein, putative isoform 3 [Theobroma cacao]	IPR001388 (Synaptobrevin), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf08679g00012.1			Unknown protein		
Niben101Scf00063g10005.1	sp|Q944S9|MAD16_ORYSJ	*-*-	MADS-box transcription factor 16	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03045g01004.1	sp|Q7XSK0|BGL18_ORYSJ	***-	Beta-glucosidase 18	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07716g00013.1	AT3G08620.1	****	RNA-binding KH domain-containing protein LENGTH=283	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf01143g02007.1	ref|NP_191672.1|	****	alpha-1,4-galacturon [Arabidopsis thaliana] emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gb|AHL38722.1| glycosyltransferase, partial [Arabidopsis thaliana]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf02367g04004.1	gb|KFV93691.1|	***-	UPF0369 protein C6orf57, partial [Fulmarus glacialis]	IPR012875 (Protein of unknown function DUF1674)	
Niben101Scf06754g00007.1	sp|Q9M612|NACA_PINTA	***-	Nascent polypeptide-associated complex subunit alpha-like protein	IPR016641 (Nascent polypeptide-associated complex subunit alpha)	GO:0005515 (protein binding)
Niben101Scf09787g01003.1	sp|Q56XP4|NHX2_ARATH	****	Sodium/hydrogen exchanger 2	IPR006153 (Cation/H+ exchanger), IPR018422 (Cation/H+ exchanger, CPA1 family)	GO:0005774 (vacuolar membrane), GO:0005886 (plasma membrane), GO:0006812 (cation transport), GO:0006814 (sodium ion transport), GO:0006885 (regulation of pH), GO:0009651 (response to salt stress), GO:0015299 (solute:proton antiporter activity), GO:0015385 (sodium:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055075 (potassium ion homeostasis), GO:0055085 (transmembrane transport)
Niben101Scf04409g00002.1	sp|A4QJB1|PSBC_AETCO	*-*-	Photosystem II CP43 reaction center protein		
Niben101Scf20787g00007.1	sp|Q8GYX0|MOB1_ARATH	***-	MOB kinase activator-like 1	IPR005301 (Mob1/phocein)	
Niben101Scf05233g00010.1	AT2G32910.1	*-*-	DCD (Development and Cell Death) domain protein LENGTH=691	IPR013989 (Development/cell death domain)	
Niben101Scf06789g01001.1	ref|NP_001044734.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf02747g00011.1	sp|Q94AU2|SEC22_ARATH	****	25.3 kDa vesicle transport protein	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf02538g06007.1	sp|C5BDY7|MDTK_EDWI9	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02172g04007.1	AT5G61280.1	*-*-	Remorin family protein LENGTH=263	IPR005516 (Remorin, C-terminal)	
Niben101Scf11552g03009.1	gb|ADY38784.1|	****	sequence-specific DNA-binding transcription factor [Coffea arabica]	IPR007759 (DNA-directed RNA polymerase delta subunit/Asxl), IPR009057 (Homeodomain-like), IPR018501 (DDT domain superfamily), IPR028941 (WHIM2 domain)	GO:0003677 (DNA binding), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf24225g00008.1	sp|Q9FNJ1|FDL47_ARATH	--*-	F-box/FBD/LRR-repeat protein	IPR006566 (FBD domain)	
Niben101Scf08785g02008.1	sp|Q9SXA1|P4KA1_ARATH	*-**	Phosphatidylinositol 4-kinase alpha 1	IPR015433 (Phosphatidylinositol Kinase)	GO:0046854 (phosphatidylinositol phosphorylation), GO:0048015 (phosphatidylinositol-mediated signaling)
Niben101Scf04915g00003.1	AT4G13050.1	***-	Acyl-ACP thioesterase LENGTH=367	IPR002864 (Acyl-ACP thioesterase), IPR029069 (HotDog domain)	GO:0006633 (fatty acid biosynthetic process), GO:0016790 (thiolester hydrolase activity)
Niben101Scf01202g02006.1	sp|P93163|GPA2_SOYBN	****	Guanine nucleotide-binding protein alpha-2 subunit	IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0007186 (G-protein coupled receptor signaling pathway), GO:0019001 (guanyl nucleotide binding), GO:0031683 (G-protein beta/gamma-subunit complex binding)
Niben101Scf03450g02011.1	sp|Q3TTA7|CBLB_MOUSE	--*-	E3 ubiquitin-protein ligase CBL-B	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015063 (USP8 dimerisation domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05664g00010.1			Unknown protein		
Niben101Scf21196g00004.1	sp|D8QNI1|CSPLH_SELML	***-	CASP-like protein 5A1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf01145g00014.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf06868g01005.1	sp|Q2JU97|SAT_SYNJA	--*-	Sulfate adenylyltransferase		
Niben101Scf07829g01008.1	ref|XP_002517605.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF44769.1| conserved hypothetical protein [Ricinus communis]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf03199g00008.1	sp|G3X9R7|RN148_MOUSE	--*-	RING finger protein 148	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Ctg12603g00002.1	AT1G70320.1	*-**	ubiquitin-protein ligase 2 LENGTH=3658	IPR000569 (HECT)	GO:0004842 (ubiquitin-protein transferase activity)
Niben101Scf00944g06006.1	sp|Q556Y4|KC1_DICDI	*-**	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06258g00016.1	ref|XP_002513141.1|	*-**	nucleic acid binding protein, putative [Ricinus communis] gb|EEF49644.1| nucleic acid binding protein, putative [Ricinus communis]	IPR000467 (G-patch domain)	GO:0003676 (nucleic acid binding)
Niben101Scf02338g00007.1	emb|CDY17905.1|	--*-	BnaC04g03140D [Brassica napus]		
Niben101Scf10776g00021.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR001878 (Zinc finger, CCHC-type), IPR004087 (K Homology domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0008270 (zinc ion binding)
Niben101Scf01369g04021.1	AT2G44750.2	****	thiamin pyrophosphokinase 2 LENGTH=267	IPR006282 (Thiamin pyrophosphokinase)	GO:0004788 (thiamine diphosphokinase activity), GO:0005524 (ATP binding), GO:0006772 (thiamine metabolic process), GO:0009229 (thiamine diphosphate biosynthetic process), GO:0030975 (thiamine binding)
Niben101Scf08973g01006.1	sp|Q9CAY3|GPAT5_ARATH	***-	Glycerol-3-phosphate acyltransferase 5	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf00391g02001.1	sp|Q9XHP1|2SS1_SESIN	--*-	2S seed storage protein 1	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02125g00015.1	AT1G17230.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1101	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf01001g06013.1	sp|Q9SUY0|FB244_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf02486g08008.1	ref|NP_001051957.1|	*-*-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Ctg08897g00002.1	gb|KEH20284.1|	*-*-	RNA-binding protein, putative [Medicago truncatula]		
Niben101Scf02297g09008.1	gb|KEH17312.1|	*-**	O-acyltransferase (WSD1-like) family protein [Medicago truncatula]	IPR009721 (O-acyltransferase, WSD1, C-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity)
Niben101Scf01313g06006.1	ref|XP_007023907.1|	*-**	Ribonuclease H-like protein [Theobroma cacao] gb|EOY26529.1| Ribonuclease H-like protein [Theobroma cacao]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf01177g02013.1	sp|Q95RC0|NAA30_DROME	*-**	N-alpha-acetyltransferase 30	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf02486g01009.1	sp|Q6I544|GL52_ORYSJ	***-	Germin-like protein 5-1	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf04562g04002.1			Unknown protein		
Niben101Scf06750g00009.1	sp|Q8VY01|SCP46_ARATH	--*-	Serine carboxypeptidase-like 46		
Niben101Scf05247g02001.1	sp|A2WT96|PLA2_ORYSI	***-	Phospholipase A1-II 2	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf01882g00003.1			Unknown protein		
Niben101Scf08470g05002.1	AT2G26150.1	****	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06836g01001.1	AT1G62050.1	***-	Ankyrin repeat family protein LENGTH=624	IPR020683 (Ankyrin repeat-containing domain), IPR021832 (Ankyrin repeat domain-containing protein 13)	GO:0005515 (protein binding)
Niben101Scf00870g01013.1	AT5G50420.1	***-	O-fucosyltransferase family protein LENGTH=566	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf14939g01020.1			Unknown protein		
Niben101Scf03098g00010.1			Unknown protein		
Niben101Scf05948g05001.1	sp|P53016|RFC4_CAEEL	*-**	Replication factor C subunit 4	IPR012763 (DNA polymerase III, subunit gamma/ tau), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0005524 (ATP binding), GO:0006260 (DNA replication), GO:0009360 (DNA polymerase III complex)
Niben101Scf01934g01015.1	emb|CAB90452.1|	*-**	homolog to cAMP response element binding and beta transducin family proteins [Homo sapiens]	IPR001487 (Bromodomain), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02984g00005.1	sp|Q37548|COX2_MACCA	*-**	Cytochrome c oxidase subunit 2	IPR008972 (Cupredoxin)	GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0016020 (membrane)
Niben101Scf01190g02016.1	sp|O22800|COL14_ARATH	--**	Zinc finger protein CONSTANS-LIKE 14	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf05468g10026.1	AT3G59770.3	***-	sacI homology domain-containing protein / WW domain-containing protein LENGTH=1646	IPR001202 (WW domain), IPR002013 (SAC domain)	GO:0005515 (protein binding), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf02749g05024.1			Unknown protein		
Niben101Scf02500g01001.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf07031g00004.1	sp|Q971C9|RL7A_SULTO	***-	50S ribosomal protein L7Ae	IPR018492 (Ribosomal protein L7Ae/L8/Nhp2 family), IPR029064 (50S ribosomal protein L30e-like)	GO:0003723 (RNA binding), GO:0005730 (nucleolus), GO:0030529 (ribonucleoprotein complex), GO:0042254 (ribosome biogenesis)
Niben101Scf03723g00009.1	AT3G21690.1	***-	MATE efflux family protein LENGTH=506	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01710g04005.1	sp|Q6NMR8|FAF3_ARATH	*-*-	Protein FANTASTIC FOUR 3	IPR021410 (The fantastic four family)	
Niben101Scf07463g00002.1	sp|Q8L8A5|GIF1_ARATH	*-*-	GRF1-interacting factor 1	IPR007726 (SS18 family)	
Niben101Ctg12577g00001.1	sp|P54772|DCHS_SOLLC	***-	Histidine decarboxylase	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03175g01012.1	sp|B6JKJ8|MIAB_HELP2	--*-	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase		
Niben101Scf05416g00015.1	sp|Q5R8F6|RUS1_PONAB	--*-	RUS1 family protein C16orf58 homolog		
Niben101Scf02360g01019.1	sp|Q9XHS0|RS12_HORVU	*-*-	40S ribosomal protein S12	IPR000530 (Ribosomal protein S12e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Ctg13931g00001.1	sp|Q869L3|MDN1_DICDI	*-*-	Midasin		
Niben101Scf04763g01001.1	AT3G29180.1	***-	Protein of unknown function (DUF1336) LENGTH=513	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf00054g01002.1	sp|Q41001|BCP_PEA	*-*-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf02390g00002.1	sp|Q9SD82|RFA1B_ARATH	*-*-	Replication protein A 70 kDa DNA-binding subunit B	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf07673g00003.1			Unknown protein		
Niben101Scf01545g03002.1	AT4G33160.1	***-	F-box family protein LENGTH=457	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf05689g03003.1			Unknown protein		
Niben101Scf34602g00003.1	AT1G19180.1	***-	jasmonate-zim-domain protein 1 LENGTH=253	IPR010399 (Tify), IPR018467 (CO/COL/TOC1, conserved site)	
Niben101Scf04819g03002.1	AT4G02030.2	****	Vps51/Vps67 family (components of vesicular transport) protein LENGTH=805	IPR029175 (Exocyst complex component Sec5)	GO:0000145 (exocyst), GO:0006893 (Golgi to plasma membrane transport)
Niben101Scf03287g02002.1	sp|O04006|PSAH_BRACM	****	Photosystem I reaction center subunit VI, chloroplastic	IPR004928 (Photosystem I PsaH, reaction centre subunit VI), IPR023833 (Signal peptide, camelysin), IPR029027 (Single alpha-helix domain)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf00212g01015.1	sp|Q9LXT3|MBF1B_ARATH	***-	Multiprotein-bridging factor 1b	IPR010982 (Lambda repressor-like, DNA-binding domain), IPR013729 (Multiprotein bridging factor 1, N-terminal)	GO:0003677 (DNA binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02887g00014.1	sp|Q80UW8|RPAB1_MOUSE	--**	DNA-directed RNA polymerases I, II, and III subunit RPABC1	IPR005571 (RNA polymerase, Rpb5, N-terminal)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf04763g02007.1			Unknown protein		
Niben101Scf02562g00010.1			Unknown protein		
Niben101Scf02239g04009.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf11937g02001.1	sp|P41099|RLA2_PARAR	*-*-	60S acidic ribosomal protein P2	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf00662g05006.1	sp|Q7XHI9|BH084_ARATH	*-*-	Transcription factor bHLH84	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf24865g00007.1	AT4G21380.1	*-**	receptor kinase 3 LENGTH=850	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08015g01005.1			Unknown protein		
Niben101Scf00402g00004.1			Unknown protein		
Niben101Scf06916g01007.1	AT5G48040.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=422	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf08092g00003.1	gb|KEH39902.1|	*-*-	Smr (small MutS-related) domain protein [Medicago truncatula]	IPR002625 (Smr protein/MutS2 C-terminal)	
Niben101Scf09790g00018.1	ref|XP_007039866.1|	*-*-	P-loop containing nucle isoform 4 [Theobroma cacao]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf06509g05008.1	sp|Q5R7R9|SNW1_PONAB	*-*-	SNW domain-containing protein 1	IPR017862 (SKI-interacting protein, SKIP)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf09317g01008.1	gb|AAF14244.1|AF110228_1	***-	nuclear RNA binding protein A [Spinacia oleracea]	IPR006861 (Hyaluronan/mRNA-binding protein), IPR019084 (Stm1, N-terminal)	
Niben101Scf02749g01002.1	AT5G07990.1	*-*-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05645g06005.1	sp|Q01IH3|PX114_ORYSI	****	Peroxisomal membrane protein 11-4	IPR008733 (Peroxisomal biogenesis factor 11)	GO:0005779 (integral component of peroxisomal membrane), GO:0016559 (peroxisome fission)
Niben101Scf00885g13010.1	emb|CAE05840.2|	*-*-	OSJNBa0091C07.2 [Oryza sativa Japonica Group]	IPR018289 (MULE transposase domain)	
Niben101Scf02583g02013.1	sp|Q06721|RCA_ANASC	***-	Ribulose bisphosphate carboxylase/oxygenase activase	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf04181g00016.1			Unknown protein		
Niben101Scf00447g01012.1	ref|XP_002514668.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF47774.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00627g00008.1	sp|Q9XJ60|MAD50_ORYSJ	*-**	MADS-box transcription factor 50	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00851g06024.1	sp|Q9LVQ5|PP432_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02461g03004.1	AT1G16330.1	***-	cyclin b3;1 LENGTH=648	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf07585g00005.1	sp|Q7XJE6|MCA1_ARATH	*-*-	Metacaspase-1	IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04379g01005.1			Unknown protein		
Niben101Scf03431g00002.1	sp|P62915|TF2B_MOUSE	--*-	Transcription initiation factor IIB		
Niben101Scf02063g02015.1	sp|P10967|ACCH3_SOLLC	*-*-	1-aminocyclopropane-1-carboxylate oxidase homolog	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf02031g07002.1	sp|Q9LTS3|CKX3_ARATH	****	Cytokinin dehydrogenase 3	IPR016164 (FAD-linked oxidase-like, C-terminal), IPR016166 (FAD-binding, type 2), IPR016170 (Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0009690 (cytokinin metabolic process), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0019139 (cytokinin dehydrogenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07608g03008.1	sp|Q9C8J8|AB13G_ARATH	--*-	ABC transporter G family member 13		
Niben101Scf01842g06009.1	AT3G48410.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=385	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf16915g02001.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf00798g01008.1	sp|A3D7V9|PYRC_SHEB5	--*-	Dihydroorotase		
Niben101Scf00338g08013.1	sp|B8PAR0|RSSA_POSPM	****	40S ribosomal protein S0	IPR001865 (Ribosomal protein S2), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf09552g01025.1			Unknown protein		
Niben101Scf06437g01008.1	sp|Q8KBK4|RL13_CHLTE	***-	50S ribosomal protein L13	IPR005822 (Ribosomal protein L13), IPR023563 (Ribosomal protein L13, conserved site), IPR023564 (Ribosomal protein L13 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04663g04002.1	AT5G11430.1	****	SPOC domain / Transcription elongation factor S-II protein LENGTH=873	IPR003618 (Transcription elongation factor S-II, central domain), IPR012921 (Spen paralogue and orthologue SPOC, C-terminal)	GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf02847g00042.1	gb|AFK76482.1|	--*-	tRNA ligase [Solanum melongena]		
Niben101Scf00503g07008.1	sp|P51965|UB2E1_HUMAN	***-	Ubiquitin-conjugating enzyme E2 E1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf01689g05002.1	sp|Q945T0|RALF_TOBAC	***-	Rapid alkalinization factor	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf01887g02002.1	ref|XP_003589248.1|	*-*-	Pheromone receptor-like protein [Medicago truncatula] gb|AES59499.1| DUF1645 family protein [Medicago truncatula]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf12653g01005.1	sp|Q9JI74|KLHL1_MOUSE	*-*-	Kelch-like protein 1	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf00149g06013.1	ref|WP_008196576.1|	****	chitin-binding protein [Microcystis sp. T1-4] emb|CCI30484.1| Chlorophyll a synthase [Microcystis sp. T1-4]	IPR000537 (UbiA prenyltransferase family)	GO:0004659 (prenyltransferase activity), GO:0015995 (chlorophyll biosynthetic process), GO:0016021 (integral component of membrane), GO:0046408 (chlorophyll synthetase activity)
Niben101Scf05937g01004.1	emb|CDX85682.1|	***-	BnaA02g01310D [Brassica napus]		
Niben101Scf00752g01003.1	sp|P36183|ENPL_HORVU	--*-	Endoplasmin homolog		
Niben101Scf00175g02018.1	sp|Q2V6K0|UFOG6_FRAAN	--*-	UDP-glucose flavonoid 3-O-glucosyltransferase 6		
Niben101Scf11262g01008.1	sp|Q9XGW1|AGO10_ARATH	***-	Protein argonaute 10	IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf04113g12008.1	AT5G42770.2	***-	Maf-like protein LENGTH=233	IPR029001 (Inosine triphosphate pyrophosphatase-like)	GO:0005737 (cytoplasm)
Niben101Scf01954g02001.1	sp|O88587|COMT_MOUSE	--*-	Catechol O-methyltransferase	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01423g05013.1	sp|Q1PE04|FBL25_ARATH	*-*-	F-box/LRR-repeat protein 25	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf09367g00018.1	ref|XP_002513646.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF49049.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05300g00010.1	AT2G21340.1	***-	MATE efflux family protein LENGTH=559		
Niben101Ctg13201g00003.1			Unknown protein		
Niben101Scf06132g00007.1	sp|Q8W5S1|CCH11_ARATH	--*-	Cyclin-H1-1		
Niben101Scf01623g01029.1			Unknown protein		
Niben101Scf08045g03002.1	AT1G27930.1	***-	Protein of unknown function (DUF579) LENGTH=289	IPR021148 (Putative polysaccharide biosynthesis protein)	
Niben101Scf03729g00011.1	AT4G20380.8	***-	LSD1 zinc finger family protein LENGTH=210	IPR005735 (Zinc finger, LSD1-type)	
Niben101Scf06876g01025.1	sp|Q8LC83|RS242_ARATH	***-	40S ribosomal protein S24-2	IPR001976 (Ribosomal protein S24e), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Ctg15394g00005.1	AT4G09980.1	*-*-	Methyltransferase MT-A70 family protein LENGTH=963		
Niben101Scf01064g03006.1	sp|P19963|ALL1_OLEEU	***-	Major pollen allergen Ole e 1	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf03080g01015.1	AT1G68670.1	***-	myb-like transcription factor family protein LENGTH=354	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf12197g03016.1	AT5G42570.1	****	B-cell receptor-associated 31-like LENGTH=218	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Ctg08336g00002.1			Unknown protein		
Niben101Scf03446g01001.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf06301g01006.1	emb|CDY49982.1|	--*-	BnaC03g34390D [Brassica napus]		
Niben101Scf00872g03005.1	sp|Q40477|ERF4_TOBAC	*-**	Ethylene-responsive transcription factor 4	IPR015300 (DNA-binding pseudobarrel domain), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04551g00005.1	ref|XP_003599924.1|	*-**	ATP-dependent DNA helicase PIF1 [Medicago truncatula]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf13518g00007.1	AT5G54855.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=146	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf06216g01014.1	sp|A1CJ34|CHL1_ASPCL	****	ATP-dependent RNA helicase chl1	IPR006555 (ATP-dependent helicase, C-terminal), IPR014013 (Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0004003 (ATP-dependent DNA helicase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008026 (ATP-dependent helicase activity), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf02440g00006.1	sp|C4XGC2|NQOR_DESMR	***-	NAD(P)H dehydrogenase (quinone)	IPR010089 (Flavoprotein WrbA), IPR029039 (Flavoprotein-like)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0045892 (negative regulation of transcription, DNA-templated)
Niben101Scf13394g00021.1	sp|B0U0U4|RLMKL_FRAP2	--*-	Ribosomal RNA large subunit methyltransferase K/L		
Niben101Scf01888g07005.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08357g01006.1	ref|XP_002531850.1|	****	calcium ion binding protein, putative [Ricinus communis] gb|EEF30528.1| calcium ion binding protein, putative [Ricinus communis]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf07080g03004.1	sp|P07597|NLTP1_HORVU	--*-	Non-specific lipid-transfer protein 1	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf01739g03002.1	sp|Q39JI8|PUR9_BURL3	****	Bifunctional purine biosynthesis protein PurH	IPR002695 (AICARFT/IMPCHase bienzyme), IPR016193 (Cytidine deaminase-like), IPR024051 (AICAR transformylase domain)	GO:0003824 (catalytic activity), GO:0003937 (IMP cyclohydrolase activity), GO:0004643 (phosphoribosylaminoimidazolecarboxamide formyltransferase activity), GO:0006164 (purine nucleotide biosynthetic process)
Niben101Scf01433g02014.1	sp|B1AS42|NB5R5_MOUSE	--*-	NADH-cytochrome b5 reductase-like	IPR019180 (Oxidoreductase-like, N-terminal)	
Niben101Scf00332g02011.1	sp|Q9FT74|RQL1_ARATH	*-*-	ATP-dependent DNA helicase Q-like 1		
Niben101Scf25485g00001.1	AT5G18490.1	*-*-	Plant protein of unknown function (DUF946) LENGTH=553	IPR009291 (Vacuolar protein sorting-associated protein 62)	
Niben101Scf00753g03003.1	sp|P13416|CHS1_SINAL	*-*-	Chalcone synthase 1	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf19295g00011.1	sp|A4QJA7|RPOB_AETCO	*-**	DNA-directed RNA polymerase subunit beta	IPR007642 (RNA polymerase Rpb2, domain 2), IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf01429g01016.1	sp|Q9ZSD4|SY121_ARATH	***-	Syntaxin-121	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf17514g00011.1	ref|XP_002529976.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF32419.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf13577g01007.1	sp|A8FGH8|PCKA_BACP2	****	Phosphoenolpyruvate carboxykinase [ATP]	IPR001272 (Phosphoenolpyruvate carboxykinase, ATP-utilising)	GO:0004611 (phosphoenolpyruvate carboxykinase activity), GO:0004612 (phosphoenolpyruvate carboxykinase (ATP) activity), GO:0005524 (ATP binding), GO:0006094 (gluconeogenesis), GO:0017076 (purine nucleotide binding)
Niben101Scf03278g04010.1	sp|Q9C534|FB19_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02148g00003.1			Unknown protein		
Niben101Scf13188g00006.1	sp|Q06H17|PSBA_DRIGR	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf05889g00002.1	ref|XP_002518274.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF44034.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06081g00007.1	sp|O23755|EF2_BETVU	*-*-	Elongation factor 2		
Niben101Scf04568g01009.1	sp|Q8L7S4|MP702_ARATH	****	Microtubule-associated protein 70-2	IPR009768 (Microtubule-associated protein 70)	GO:0007010 (cytoskeleton organization), GO:0008017 (microtubule binding)
Niben101Scf02077g12030.1	sp|Q8R307|VPS18_MOUSE	--*-	Vacuolar protein sorting-associated protein 18 homolog		
Niben101Scf03865g03002.1	sp|P50134|DCOR_DATST	***-	Ornithine decarboxylase	IPR000183 (Ornithine/DAP/Arg decarboxylase), IPR029066 (PLP-binding barrel)	GO:0003824 (catalytic activity), GO:0006596 (polyamine biosynthetic process)
Niben101Scf15536g01002.1	sp|Q3U2U7|MET17_MOUSE	*-**	Methyltransferase-like protein 17, mitochondrial	IPR007533 (Cytochrome c oxidase assembly protein CtaG/Cox11), IPR015324 (Ribosomal protein Rsm22, bacterial-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005507 (copper ion binding), GO:0006412 (translation), GO:0008168 (methyltransferase activity)
Niben101Scf04511g00010.1	AT1G30270.1	****	CBL-interacting protein kinase 23 LENGTH=482	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04395g00004.1	sp|Q8LHP0|ELOF1_ORYSJ	*-*-	Transcription elongation factor 1 homolog	IPR007808 (Transcription elongation factor 1)	
Niben101Scf11355g02005.1	AT5G38650.1	***-	Proteasome maturation factor UMP1 LENGTH=141	IPR008012 (Proteasome maturation factor UMP1)	
Niben101Scf05444g07021.1	sp|Q7Z2K6|ERMP1_HUMAN	*-*-	Endoplasmic reticulum metallopeptidase 1	IPR007484 (Peptidase M28)	
Niben101Scf07725g00006.1	sp|Q84UU9|TPS06_ARATH	*-**	Terpenoid synthase 6	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf02043g04017.1	sp|Q6NQJ8|SDG40_ARATH	***-	Protein SET DOMAIN GROUP 40	IPR001214 (SET domain), IPR015353 (Rubisco LSMT, substrate-binding domain)	GO:0005515 (protein binding)
Niben101Scf00247g04007.1	sp|Q3Z990|AROE_DEHM1	****	Shikimate dehydrogenase	IPR013708 (Shikimate dehydrogenase substrate binding, N-terminal), IPR013785 (Aldolase-type TIM barrel), IPR016040 (NAD(P)-binding domain), IPR022893 (Shikimate, quinate/shikimate dehydrogenase)	GO:0003824 (catalytic activity), GO:0003855 (3-dehydroquinate dehydratase activity), GO:0004764 (shikimate 3-dehydrogenase (NADP+) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01934g00006.1	sp|Q9M7X7|RL291_ARATH	***-	60S ribosomal protein L29-1	IPR002673 (Ribosomal protein L29e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02459g01005.1	sp|Q9Y5Q9|TF3C3_HUMAN	*-*-	General transcription factor 3C polypeptide 3	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf18110g00002.1			Unknown protein		
Niben101Scf04122g00022.1	AT1G11360.1	***-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=242	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf01323g03005.1	sp|Q67ZE1|HSDD2_ARATH	****	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2	IPR016040 (NAD(P)-binding domain)	GO:0003854 (3-beta-hydroxy-delta5-steroid dehydrogenase activity), GO:0006694 (steroid biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00149g10014.1	sp|Q9LMN7|WAK5_ARATH	*-**	Wall-associated receptor kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03738g03018.1	ref|XP_002534451.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF27931.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09304g00002.1	sp|B0C431|RS11_ACAM1	*-*-	30S ribosomal protein S11	IPR001971 (Ribosomal protein S11)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09424g03006.1	sp|Q8LD23|GDL4_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01992g01010.1	sp|Q8S8I2|ULT2_ARATH	***-	Protein ULTRAPETALA 2		
Niben101Scf02155g00008.1			Unknown protein		
Niben101Scf04819g00002.1	sp|P27898|MYBP_MAIZE	*-*-	Myb-related protein P	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00702g00045.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07080g03005.1	emb|CDY11823.1|	***-	BnaC03g57550D [Brassica napus]		
Niben101Scf15723g00018.1	AT1G72820.1	***-	Mitochondrial substrate carrier family protein LENGTH=349	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf04436g15049.1	sp|Q3EDF8|PPR28_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf08007g00002.1	sp|O24160|TGA21_TOBAC	*-**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04674g00006.1	sp|P16924|P4HA1_CHICK	--*-	Prolyl 4-hydroxylase subunit alpha-1		
Niben101Scf08702g00022.1	sp|P46291|RL38_SOLLC	***-	60S ribosomal protein L38	IPR002675 (Ribosomal protein L38e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03930g00022.1	emb|CDY30110.1|	*-*-	BnaC05g37520D [Brassica napus]		
Niben101Scf02312g05007.1	sp|Q54ZG7|TM234_DICDI	***-	Transmembrane protein 234 homolog	IPR018908 (Uncharacterised protein family UPF0546)	
Niben101Scf19059g00005.1	sp|Q58DS5|RAB13_BOVIN	***-	Ras-related protein Rab-13	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02073g09007.1	gb|ABK78687.1|	*-**	GTP binding protein [Brassica rapa]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf03638g05005.1	AT3G03000.1	****	EF hand calcium-binding protein family LENGTH=165	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01001g02005.1	sp|O24160|TGA21_TOBAC	*-**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg16210g00008.1	sp|P27492|CB21_TOBAC	***-	Chlorophyll a-b binding protein 16, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf02148g00005.1			Unknown protein		
Niben101Scf03114g09011.1	sp|Q80WS3|FBLL1_MOUSE	****	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1	IPR000692 (Fibrillarin), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0006364 (rRNA processing), GO:0008033 (tRNA processing), GO:0008168 (methyltransferase activity)
Niben101Scf00511g00010.1	sp|O66921|DNAJ2_AQUAE	--*-	Chaperone protein DnaJ 2	IPR001623 (DnaJ domain)	
Niben101Scf02915g08013.1	sp|P59277|SYP81_ARATH	***-	Syntaxin-81	IPR010989 (t-SNARE), IPR019529 (SNARE-complex protein Syntaxin-18 N-terminal)	GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf01942g05017.1	sp|Q9ZSK5|ZOG_PHALU	--*-	Zeatin O-glucosyltransferase		
Niben101Scf00802g00005.1	sp|O80742|PUB19_ARATH	***-	U-box domain-containing protein 19	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf00579g01005.1	AT3G03430.1	****	Calcium-binding EF-hand family protein LENGTH=83	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf08127g05002.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf06170g00012.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06840g00014.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2		
Niben101Scf02367g00006.1			Unknown protein		
Niben101Scf02849g06001.1	sp|B8AQW7|PLP1_ORYSI	***-	Patatin-like protein 1	IPR000160 (GGDEF domain), IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf07402g00012.1	AT4G22290.1	***-	Ubiquitin-specific protease family C19-related protein LENGTH=445		
Niben101Scf10970g00003.1			Unknown protein		
Niben101Scf09862g01002.1	sp|Q5ZMU6|PP4R2_CHICK	*-*-	Serine/threonine-protein phosphatase 4 regulatory subunit 2	IPR015267 (Protein phosphatase 4 core regulatory subunit R2)	
Niben101Scf11515g00003.1	AT5G65470.1	***-	O-fucosyltransferase family protein LENGTH=504	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf04300g03002.1	sp|Q96321|IMA1_ARATH	***-	Importin subunit alpha-1	IPR002652 (Importin-alpha, importin-beta-binding domain), IPR016024 (Armadillo-type fold), IPR024931 (Importin subunit alpha)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006606 (protein import into nucleus), GO:0008565 (protein transporter activity)
Niben101Ctg00765g00002.1			Unknown protein		
Niben101Scf05617g01022.1	sp|Q9LSL9|PP445_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03257g01005.1	AT4G38160.3	****	Mitochondrial transcription termination factor family protein LENGTH=378	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05732g00015.1	sp|Q8LCW9|RLA11_ARATH	***-	60S acidic ribosomal protein P1-1	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf09014g01009.1	AT2G27770.1	*-*-	Plant protein of unknown function (DUF868) LENGTH=320	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf03385g02011.1	AT2G15220.1	***-	Plant basic secretory protein (BSP) family protein LENGTH=225	IPR007541 (Uncharacterised protein family, basic secretory protein)	
Niben101Scf06216g01012.1	AT1G79900.1	***-	Mitochondrial substrate carrier family protein LENGTH=296	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf06738g02015.1	sp|Q8TYC2|RRP42_METKA	***-	Exosome complex component Rrp42	IPR015847 (Exoribonuclease, phosphorolytic domain 2), IPR020568 (Ribosomal protein S5 domain 2-type fold)	
Niben101Scf02517g06012.1	ref|XP_003620005.1|	***-	GRF zinc finger containing protein [Medicago truncatula]		
Niben101Scf02929g03004.1	gb|AGZ90705.1|	*-*-	maturase, partial (mitochondrion) [Forsskaolea angustifolia]		
Niben101Scf00858g06023.1	AT5G54530.1	***-	Protein of unknown function, DUF538 LENGTH=161	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf04964g00001.1	sp|Q9FKE9|RHD32_ARATH	*-*-	Protein ROOT HAIR DEFECTIVE 3 homolog 2	IPR008803 (RHD3/Sey1)	
Niben101Scf10158g00002.1	sp|Q9FJR0|RENT1_ARATH	*-*-	Regulator of nonsense transcripts 1 homolog		
Niben101Scf00308g00002.1	sp|Q94JX9|NACA2_ARATH	*-*-	Nascent polypeptide-associated complex subunit alpha-like protein 2	IPR016641 (Nascent polypeptide-associated complex subunit alpha)	
Niben101Scf03206g01010.1	sp|Q68RU4|YCF2_PANGI	--*-	Protein Ycf2		
Niben101Scf02045g02007.1	AT1G64530.1	*-*-	Plant regulator RWP-RK family protein LENGTH=841	IPR029016 (GAF domain-like)	
Niben101Scf00219g04018.1	sp|Q9NV70|EXOC1_HUMAN	***-	Exocyst complex component 1	IPR019160 (Exocyst complex, component 1/SEC3)	
Niben101Scf10234g00007.1			Unknown protein		
Niben101Scf04724g04001.1	sp|Q76CU2|PDR1_TOBAC	*-*-	Pleiotropic drug resistance protein 1		
Niben101Scf03987g00013.1	sp|Q9FLJ2|NC100_ARATH	*-*-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09960g01013.1	ref|NP_001147391.1|	*-**	phot s psbY [Zea mays]	IPR009388 (Photosystem II PsbY)	GO:0009523 (photosystem II), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0030145 (manganese ion binding)
Niben101Scf04539g02016.1	AT4G32950.1	***-	Protein phosphatase 2C family protein LENGTH=326	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf09696g01116.1	sp|Q36551|CYB_STRTC	***-	Cytochrome b	IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf03283g04033.1	AT3G10140.1	*-*-	RECA homolog 3 LENGTH=389	IPR013765 (DNA recombination and repair protein RecA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003697 (single-stranded DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0006281 (DNA repair), GO:0008094 (DNA-dependent ATPase activity), GO:0009432 (SOS response)
Niben101Scf03911g05010.1	sp|Q58FS3|RAD_ANTMA	--*-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf02639g03015.1	AT1G54320.1	***-	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein LENGTH=349	IPR005045 (CDC50/LEM3 family)	GO:0016020 (membrane)
Niben101Scf03431g00058.1			Unknown protein		
Niben101Scf02626g05001.1	sp|Q9SUY0|FB244_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf11312g01007.1	AT1G72480.1	***-	Lung seven transmembrane receptor family protein LENGTH=509	IPR009637 (Transmembrane receptor, eukaryota)	GO:0016021 (integral component of membrane)
Niben101Scf06435g02003.1			Unknown protein		
Niben101Scf04918g07003.1	sp|Q9FZP1|HPSE3_ARATH	***-	Heparanase-like protein 3	IPR005199 (Glycoside hydrolase, family 79)	GO:0005975 (carbohydrate metabolic process), GO:0016020 (membrane), GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf03905g01001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03599g01007.1	AT4G00150.1	*-*-	GRAS family transcription factor LENGTH=558	IPR005202 (Transcription factor GRAS)	
Niben101Scf00526g03006.1	sp|O22585|AMYB_MEDSA	*-**	Beta-amylase	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf02897g00009.1	dbj|BAD81757.1|	*-*-	aminotransferase-like [Oryza sativa Japonica Group]	IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf00447g01010.1	sp|Q9M310|FBK77_ARATH	***-	F-box/kelch-repeat protein	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf03858g00030.1	AT4G00990.1	***-	Transcription factor jumonji (jmjC) domain-containing protein LENGTH=840	IPR003347 (JmjC domain), IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Scf02407g06005.1	gb|AAA34060.1|	*-*-	cysteine-rich extensin-like protein-2 [Nicotiana tabacum]		
Niben101Scf10381g02009.1	sp|Q6DRN3|NOC3L_DANRE	***-	Nucleolar complex protein 3 homolog	IPR005612 (CCAAT-binding factor), IPR011501 (Nucleolar complex-associated), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf06976g02009.1	sp|O77750|AQP4_BOVIN	***-	Aquaporin-4	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf06512g00007.1			Unknown protein		
Niben101Scf35628g00005.1	AT3G26370.1	***-	O-fucosyltransferase family protein LENGTH=557	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf01071g03004.1	AT5G64740.1	****	cellulose synthase 6 LENGTH=1084	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf06928g00012.1	sp|Q54JC8|PUR4_DICDI	*-*-	Phosphoribosylformylglycinamidine synthase	IPR016188 (PurM, N-terminal-like)	GO:0003824 (catalytic activity)
Niben101Scf00344g00003.1	gb|AAC24187.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf02318g05003.1	sp|Q32KY9|NSE2_BOVIN	--**	E3 SUMO-protein ligase NSE2	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR026846 (E3 SUMO-protein ligase Nse2 (Mms21))	GO:0000724 (double-strand break repair via homologous recombination), GO:0019789 (SUMO transferase activity), GO:0030915 (Smc5-Smc6 complex)
Niben101Scf00228g01005.1	gb|AES64345.2|	*-*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf03064g02029.1	sp|Q27RY7|YCF2_SOLTU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf03099g00011.1	ref|XP_007033325.1|	--*-	Myb-like HTH transcriptional regulator family protein [Theobroma cacao] gb|EOY04251.1| Myb-like HTH transcriptional regulator family protein [Theobroma cacao]		
Niben101Scf04654g04007.1	sp|A4SWL7|PDXH_POLSQ	*-**	Pyridoxine/pyridoxamine 5'-phosphate oxidase	IPR000659 (Pyridoxamine 5'-phosphate oxidase), IPR021198 (Pyridoxamine 5'-phosphate oxidase, plant)	GO:0004733 (pyridoxamine-phosphate oxidase activity), GO:0008615 (pyridoxine biosynthetic process), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03308g02014.1			Unknown protein		
Niben101Scf09778g00002.1	AT3G26560.1	*-**	ATP-dependent RNA helicase, putative LENGTH=1168	IPR002487 (Transcription factor, K-box), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0004386 (helicase activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf18418g00008.1	AT1G51170.1	*-**	Protein kinase superfamily protein LENGTH=404	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13000g04016.1	AT4G26210.1	****	Mitochondrial ATP synthase subunit G protein LENGTH=122	IPR006808 (ATPase, F0 complex, subunit G, mitochondrial)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf01453g09008.1	gb|KEH30241.1|	-***	plant invertase/pectin methylesterase inhibitor protein [Medicago truncatula]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf24149g00002.1	sp|Q39265|ZFP6_ARATH	*-*-	Zinc finger protein 6	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf07058g05012.1			Unknown protein		
Niben101Scf10225g00005.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02117g00001.1	sp|Q9S762|HIS1A_ARATH	--*-	ATP phosphoribosyltransferase 1, chloroplastic		
Niben101Scf12307g01004.1	sp|Q03461|NLTP2_TOBAC	****	Non-specific lipid-transfer protein 2	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf01392g02013.1	emb|CAG26908.1|	***-	impaired sucrose induction 1-like protein [Medicago truncatula]	IPR012535 (Cell division protein Cdc14), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf03398g04007.1	ref|XP_002534100.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF28282.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01172g11017.1	sp|Q9FMZ4|Y5270_ARATH	*-*-	B3 domain-containing protein		
Niben101Scf02269g00011.1	AT3G08510.1	****	phospholipase C 2 LENGTH=581	IPR001192 (Phosphoinositide phospholipase C family)	GO:0004435 (phosphatidylinositol phospholipase C activity), GO:0005515 (protein binding), GO:0006629 (lipid metabolic process), GO:0007165 (signal transduction), GO:0008081 (phosphoric diester hydrolase activity), GO:0035556 (intracellular signal transduction)
Niben101Scf00854g04006.1			Unknown protein		
Niben101Scf00527g06004.1			Unknown protein		
Niben101Scf04758g00001.1	sp|Q9KP42|THIQ_VIBCH	--**	Thiamine import ATP-binding protein ThiQ	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf01740g13006.1	AT4G08630.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=845		
Niben101Scf01218g00007.1	sp|Q93WC4|IAA29_ARATH	*-*-	Auxin-responsive protein IAA29	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf02814g02013.1	gb|KEH24112.1|	***-	NLI interacting factor-like phosphatase [Medicago truncatula]	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding)
Niben101Scf00894g00004.1	sp|Q94A43|BEH2_ARATH	***-	BES1/BZR1 homolog protein 2	IPR008540 (BZR1, transcriptional repressor)	
Niben101Scf05640g00004.1	sp|Q14FG7|RPOC2_POPAL	*-**	DNA-directed RNA polymerase subunit beta''	IPR007066 (RNA polymerase Rpb1, domain 3)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf08609g01015.1	emb|CDY61112.1|	*-*-	BnaA06g39450D [Brassica napus]		
Niben101Scf02929g05010.1	AT4G01810.1	*-*-	Sec23/Sec24 protein transport family protein LENGTH=880	IPR002035 (von Willebrand factor, type A)	
Niben101Scf04109g05007.1	sp|Q5R874|DHX9_PONAB	****	ATP-dependent RNA helicase A	IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014720 (Double-stranded RNA-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004386 (helicase activity)
Niben101Scf04181g00015.1	sp|O76021|RL1D1_HUMAN	***-	Ribosomal L1 domain-containing protein 1	IPR016094 (Ribosomal protein L1, 2-layer alpha/beta-sandwich), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding)
Niben101Scf02936g04020.1	sp|Q2V465|SCP11_ARATH	****	Serine carboxypeptidase-like 11	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04537g01009.1	sp|O82345|BAG6_ARATH	*-**	BAG family molecular chaperone regulator 6	IPR000048 (IQ motif, EF-hand binding site), IPR003103 (BAG domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf02740g06007.1	sp|B3GS44|LRE_ARATH	***-	GPI-anchored protein LORELEI		
Niben101Scf00117g02009.1	sp|Q93Y22|COPD_ARATH	***-	Coatomer subunit delta	IPR011012 (Longin-like domain), IPR027059 (Coatomer delta subunit), IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0006890 (retrograde vesicle-mediated transport, Golgi to ER), GO:0016192 (vesicle-mediated transport), GO:0030126 (COPI vesicle coat), GO:0030131 (clathrin adaptor complex)
Niben101Ctg11814g00001.1	AT3G24315.1	*-*-	Sec20 family protein LENGTH=293		
Niben101Scf03648g04020.1	AT4G02460.1	*-*-	DNA mismatch repair protein, putative LENGTH=923		
Niben101Scf06222g02009.1	gb|AAC33276.1|	*-*-	cotton fiber expressed protein 1 [Gossypium hirsutum]	IPR008480 (Protein of unknown function DUF761, plant), IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf01469g05005.1	AT1G61870.1	***-	pentatricopeptide repeat 336 LENGTH=408	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06153g03015.1	AT2G37740.1	*-*-	zinc-finger protein 10 LENGTH=304	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf07549g02022.1	sp|Q9C9X3|ANXD5_ARATH	***-	Annexin D5	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf04875g00016.1	sp|P82129|RR7_SPIOL	*-**	30S ribosomal protein S7, chloroplastic	IPR006032 (Ribosomal protein S12/S23), IPR023798 (Ribosomal protein S7 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf06551g00010.1	emb|CDY42644.1|	-**-	BnaC01g00560D [Brassica napus]		
Niben101Scf01596g01016.1	sp|P07506|COX1_SOYBN	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10210g01004.1	sp|G5CEW6|IF4G_WHEAT	*-*-	Eukaryotic translation initiation factor 4G	IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf08271g00007.1	ref|XP_007018378.1|	*-*-	RNA-binding KH domain-containing protein, putative isoform 3 [Theobroma cacao] gb|EOY15603.1| RNA-binding KH domain-containing protein, putative isoform 3 [Theobroma cacao]		
Niben101Scf01882g00005.1	sp|A0A352|PSBE_COFAR	***-	Cytochrome b559 subunit alpha	IPR006217 (Photosystem II cytochrome b559, alpha subunit)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf06646g00021.1	sp|C3L3G5|PRMA_CLOB6	--*-	Ribosomal protein L11 methyltransferase	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf05683g00015.1	sp|B4SBU2|RS12_PELPB	*-**	30S ribosomal protein S12	IPR000440 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3), IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0015935 (small ribosomal subunit), GO:0055114 (oxidation-reduction process)
Niben101Scf01314g02007.1	AT5G15050.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=434	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf08137g02018.1	sp|O22582|H2B_GOSHI	***-	Histone H2B	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf03932g05003.1	AT3G15030.1	*-*-	TCP family transcription factor 4 LENGTH=420	IPR005333 (Transcription factor, TCP)	
Niben101Scf05709g01018.1	sp|Q9LV40|ROGF8_ARATH	****	Rho guanine nucleotide exchange factor 8	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Ctg06502g00001.1	AT1G12310.1	****	Calcium-binding EF-hand family protein LENGTH=148	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf07863g00003.1	sp|Q9NW13|RBM28_HUMAN	*-**	RNA-binding protein 28	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00212g03027.1	sp|P81898|PNAA_PRUDU	***-	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A	IPR021102 (Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A)	
Niben101Scf04643g01003.1	ref|WP_026786098.1|	***-	MULTISPECIES: hypothetical protein [Planktothrix]	IPR016174 (Di-haem cytochrome, transmembrane), IPR025067 (Protein of unknown function DUF4079)	GO:0016020 (membrane), GO:0022904 (respiratory electron transport chain)
Niben101Scf00298g03010.1	AT1G19110.1	***-	inter-alpha-trypsin inhibitor heavy chain-related LENGTH=754	IPR002035 (von Willebrand factor, type A)	
Niben101Scf05824g13013.1	sp|Q9M2Z5|FBL53_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf03221g02008.1	sp|A1XQR9|RUXE_PIG	***-	Small nuclear ribonucleoprotein E	IPR010920 (Like-Sm (LSM) domain), IPR027078 (Small nuclear ribonucleoprotein E)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf00390g04007.1	AT1G61600.1	***-	Protein of unknown function (DUF1262) LENGTH=421	IPR010683 (Protein of unknown function DUF1262)	
Niben101Scf18293g00005.1	AT2G45180.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=134	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00369g04019.1	sp|P22242|DRPE_CRAPL	*-*-	Desiccation-related protein PCC13-62		
Niben101Scf07201g01002.1	sp|P0DI74|S61G1_ARATH	****	Protein transport protein Sec61 subunit gamma-1	IPR001901 (Protein translocase complex, SecE/Sec61-gamma subunit), IPR023391 (Protein translocase SecE domain)	GO:0006605 (protein targeting), GO:0006886 (intracellular protein transport), GO:0015031 (protein transport), GO:0015450 (P-P-bond-hydrolysis-driven protein transmembrane transporter activity), GO:0016020 (membrane)
Niben101Ctg14707g00003.1	sp|Q7M443|CHIT2_TULBA	***-	Chitinase 2	IPR000677 (2S globulin), IPR017853 (Glycoside hydrolase superfamily)	
Niben101Scf04286g01010.1	AT2G27660.1	*-*-	Cysteine/Histidine-rich C1 domain family protein LENGTH=718	IPR011424 (C1-like)	GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04895g00007.1	sp|Q1W375|PMM_TOBAC	****	Phosphomannomutase	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0004615 (phosphomannomutase activity), GO:0005737 (cytoplasm), GO:0008152 (metabolic process), GO:0019307 (mannose biosynthetic process)
Niben101Scf04900g00007.1	AT2G38970.1	****	Zinc finger (C3HC4-type RING finger) family protein LENGTH=692	IPR002035 (von Willebrand factor, type A), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06280g06002.1	sp|Q9JII7|ZFN2A_MOUSE	***-	AN1-type zinc finger protein 2A	IPR000058 (Zinc finger, AN1-type)	
Niben101Scf01619g00014.1	sp|Q9Y5A7|NUB1_HUMAN	*-*-	NEDD8 ultimate buster 1	IPR009060 (UBA-like)	GO:0005515 (protein binding)
Niben101Scf00317g00011.1	AT4G17370.1	****	Oxidoreductase family protein LENGTH=368	IPR004104 (Oxidoreductase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04411g01003.1	AT5G04010.1	***-	F-box family protein LENGTH=287	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05037g00004.1	sp|Q9NXR1|NDE1_HUMAN	--*-	Nuclear distribution protein nudE homolog 1		
Niben101Scf04290g00005.1	sp|Q9M5P8|SNAA_SOLTU	--*-	Alpha-soluble NSF attachment protein		
Niben101Scf03257g00010.1	sp|Q94KD3|VP52A_ARATH	***-	Vacuolar protein sorting-associated protein 52 A	IPR007258 (Vps52)	
Niben101Scf01933g04010.1	gb|ABF94520.1|	*-*-	meiotic asynaptic mutant 1, putative [Oryza sativa Japonica Group]		
Niben101Scf04325g01013.1	emb|CDY38444.1|	***-	BnaA10g17140D [Brassica napus]		
Niben101Scf02024g02023.1	sp|A8EV23|HTPG_ARCB4	--*-	Chaperone protein HtpG	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf01920g00012.1	ref|WP_012917708.1|	--*-	NAD-dependent epimerase/dehydratase [Kribbella flavida] ref|YP_003377950.1| NAD-dependent epimerase/dehydratase [Kribbella flavida DSM 17836] gb|ADB29151.1| NAD-dependent epimerase/dehydratase [Kribbella flavida DSM 17836]		
Niben101Scf00577g01007.1			Unknown protein		
Niben101Scf01359g03006.1	sp|Q96KR6|F210B_HUMAN	*-*-	Protein FAM210B	IPR009688 (Domain of unknown function DUF1279)	
Niben101Scf06956g00008.1	ref|WP_024521784.1|	--*-	glycosyl transferase [Lactobacillus plantarum]		
Niben101Scf03954g01001.1	AT1G76760.1	***-	thioredoxin Y1 LENGTH=172	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf35862g00005.1	AT3G19850.1	***-	Phototropic-responsive NPH3 family protein LENGTH=554	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	
Niben101Scf01524g00017.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02111g18005.1	sp|Q9FGY4|FB341_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf01892g02013.1	AT1G53510.1	****	mitogen-activated protein kinase 18 LENGTH=615	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03888g00002.1	sp|O23264|SEBP1_ARATH	****	Selenium-binding protein 1	IPR008826 (Selenium-binding protein)	GO:0005515 (protein binding), GO:0008430 (selenium binding)
Niben101Scf08137g01034.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02069g01020.1	sp|O82509|TBL23_ARATH	***-	Protein trichome birefringence-like 23	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf09854g02013.1	sp|Q9FPT1|UBP12_ARATH	*-*-	Ubiquitin carboxyl-terminal hydrolase 12	IPR024729 (ICP0-binding domain of Ubiquitin-specific protease 7)	
Niben101Scf02566g02010.1	ref|NP_198057.1|	--*-	protein AGAMOUS-LIKE 101 [Arabidopsis thaliana] gb|AAY78839.1| MADS-box family protein [Arabidopsis thaliana] gb|AED93644.1| protein agamous-like 101 [Arabidopsis thaliana]	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01182g01028.1	sp|O22881|POT2_ARATH	*-**	Potassium transporter 2	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf00779g00005.1	AT2G40490.1	****	Uroporphyrinogen decarboxylase LENGTH=394	IPR006361 (Uroporphyrinogen decarboxylase HemE)	GO:0004853 (uroporphyrinogen decarboxylase activity), GO:0006779 (porphyrin-containing compound biosynthetic process)
Niben101Scf00438g02026.1			Unknown protein		
Niben101Scf04377g01001.1	sp|Q9C7S7|ERO1_ARATH	****	Endoplasmic reticulum oxidoreductin-1	IPR007266 (Endoplasmic reticulum oxidoreductin 1)	GO:0003756 (protein disulfide isomerase activity), GO:0005783 (endoplasmic reticulum), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf39449g00002.1	sp|P36049|EBP2_YEAST	*-*-	rRNA-processing protein EBP2	IPR008610 (Eukaryotic rRNA processing)	
Niben101Scf05310g03014.1	sp|Q90515|TMEDA_TAKRU	***-	Transmembrane emp24 domain-containing protein 10	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf04495g02005.1	AT1G30950.1	***-	F-box family protein LENGTH=442	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf04350g05009.1	gb|KEH31121.1|	*-*-	hydroxyproline-rich glycoprotein family protein, putative [Medicago truncatula]		
Niben101Scf02896g00004.1	sp|Q2LVL0|MSBA_SYNAS	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf13995g01016.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf15476g01015.1	AT1G26520.1	***-	Cobalamin biosynthesis CobW-like protein LENGTH=374	IPR003495 (CobW/HypB/UreG domain), IPR011629 (Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf08535g05002.1	sp|Q570U6|EF4L4_ARATH	***-	Protein ELF4-LIKE 4	IPR009741 (Protein of unknown function DUF1313)	
Niben101Scf01250g00001.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf02123g04002.1	AT1G04945.3	*-*-	HIT-type Zinc finger family protein LENGTH=644	IPR007529 (Zinc finger, HIT-type)	
Niben101Scf05439g02055.1			Unknown protein		
Niben101Scf10161g00012.1	ref|NP_001233978.1|	*-*-	extensin-like protein Dif54 precursor [Solanum lycopersicum] emb|CAA67814.1| extensin-like protein Dif54 [Solanum lycopersicum]		
Niben101Scf05621g04002.1			Unknown protein		
Niben101Scf04231g02014.1	ref|NP_001149203.1|	***-	seed specific protein Bn15D1B [Zea mays] gb|ACG34551.1| seed specific protein Bn15D1B [Zea mays]		
Niben101Scf03905g02008.1	sp|Q8LGG8|USPAL_ARATH	*-**	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf10064g00010.1	sp|Q589A6|YCF2_SILLA	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf23177g00001.1	AT1G68940.3	*-*-	Armadillo/beta-catenin-like repeat family protein LENGTH=1061	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf10132g01036.1	sp|P49133|TPT_MAIZE	*-*-	Triose phosphate/phosphate translocator, chloroplastic	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf00485g00004.1	sp|Q2FJB5|CLPC_STAA3	*-*-	ATP-dependent Clp protease ATP-binding subunit ClpC	IPR004176 (Clp, N-terminal), IPR023150 (Double Clp-N motif)	GO:0019538 (protein metabolic process)
Niben101Scf01236g05016.1	gb|AEW48209.1|	*-*-	disease resistance protein RGH5 [Solanum huancabambense]		
Niben101Scf07639g05012.1	gb|KEH31575.1|	****	plant invertase/pectin methylesterase inhibitor [Medicago truncatula]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00975g01004.1	ref|XP_007050453.1|	***-	Serine/arginine repetitive matrix protein 2 isoform 1 [Theobroma cacao] gb|EOX94610.1| Serine/arginine repetitive matrix protein 2 isoform 1 [Theobroma cacao]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf04528g12007.1	sp|Q9YES4|PSB1_AERPE	****	Proteasome subunit beta 1	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf04285g03019.1	sp|Q9DF42|RB8AA_XENLA	--**	RNA-binding protein 8A-A	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01566g00007.1	AT1G17100.1	***-	SOUL heme-binding family protein LENGTH=232	IPR006917 (SOUL haem-binding protein), IPR011256 (Regulatory factor, effector binding domain)	
Niben101Scf00536g15021.1	sp|P22928|CHSJ_PETHY	*-*-	Chalcone synthase J	IPR016039 (Thiolase-like)	
Niben101Scf07662g02006.1			Unknown protein		
Niben101Scf03607g01010.1	sp|O64759|CAAT5_ARATH	****	Cationic amino acid transporter 5	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf03011g01015.1	sp|Q9JPD1|UBIE_RUBGI	--**	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf03241g00003.1	ref|XP_002533956.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF28425.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00725g01008.1	sp|Q8LG76|COL6_ARATH	****	Zinc finger protein CONSTANS-LIKE 6	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf06603g01015.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00578g05003.1	AT4G27280.1	***-	Calcium-binding EF-hand family protein LENGTH=130	IPR011992 (EF-hand domain pair)	
Niben101Scf04343g01005.1	sp|P93332|NOD3_MEDTR	*-*-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf00568g04025.1	sp|Q6ENH4|PSAA_ORYNI	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf01681g01005.1			Unknown protein		
Niben101Scf11438g00003.1	sp|P52012|PPIL2_CAEEL	*-**	Peptidyl-prolyl cis-trans isomerase 4	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf15579g00004.1	emb|CDY11325.1|	--*-	BnaA03g01610D [Brassica napus]		
Niben101Scf08578g00004.1	AT3G01750.1	***-	Ankyrin repeat family protein LENGTH=664	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf01460g04015.1	sp|Q8GXM8|MATE7_ARATH	*-*-	MATE efflux family protein 7		
Niben101Scf01761g06005.1	sp|Q49593|RADA_METJA	****	DNA repair and recombination protein RadA	IPR010995 (DNA repair Rad51/transcription factor NusA, alpha-helical), IPR013632 (DNA recombination and repair protein Rad51, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000166 (nucleotide binding), GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0008094 (DNA-dependent ATPase activity)
Niben101Scf01847g06002.1	AT2G21100.1	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=187	IPR004265 (Plant disease resistance response protein)	
Niben101Ctg15370g00002.1	ref|NP_001048739.1|	*-*-	product [Oryza sativa Japonica Group]	IPR007608 (Senescence regulator S40)	
Niben101Scf31472g00009.1	emb|CDY56759.1|	***-	BnaA06g40720D [Brassica napus]		
Niben101Scf06091g06022.1	AT5G32440.3	***-	Ubiquitin system component Cue protein LENGTH=265	IPR009060 (UBA-like)	GO:0005515 (protein binding)
Niben101Scf01826g02009.1	sp|Q8GWQ6|Y6344_ARATH	***-	UPF0235 protein	IPR003746 (Protein of unknown function DUF167)	
Niben101Scf02111g00007.1	emb|CDY38155.1|	***-	BnaA07g02280D [Brassica napus]		
Niben101Scf02838g07002.1	sp|Q9SK27|ENL1_ARATH	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf09331g00004.1	AT1G60460.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 23 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=493		
Niben101Scf02929g06048.1	sp|Q6BDH1|MATK_PINSI	--*-	Maturase K		
Niben101Scf02405g04013.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05745g00004.1	gb|KEH40957.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00381g04010.1	sp|Q9JIF3|GTR8_MOUSE	*-**	Solute carrier family 2, facilitated glucose transporter member 8	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03035g04011.1			Unknown protein		
Niben101Scf08590g02008.1	AT5G24340.1	****	3'-5' exonuclease domain-containing protein LENGTH=505	IPR002782 (Mut7-C RNAse domain), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf06091g06023.1	emb|CDY36547.1|	***-	BnaA06g10000D [Brassica napus]	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03210g00020.1	sp|Q5SSH8|NEUFC_MOUSE	--*-	Neuferricin		
Niben101Scf05621g00027.1	sp|Q80UM7|MOGS_MOUSE	****	Mannosyl-oligosaccharide glucosidase	IPR004888 (Glycoside hydrolase, family 63)	GO:0003824 (catalytic activity), GO:0004573 (mannosyl-oligosaccharide glucosidase activity), GO:0009311 (oligosaccharide metabolic process)
Niben101Scf00986g02003.1	sp|P49720|PSB3_HUMAN	****	Proteasome subunit beta type-3	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf03714g03018.1	sp|Q9ZUX7|IPT2_ARATH	****	tRNA dimethylallyltransferase 2	IPR002627 (tRNA isopentenyltransferase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf12966g00005.1	sp|P55038|GLTS_SYNY3	*-*-	Ferredoxin-dependent glutamate synthase 2	IPR002489 (Glutamate synthase, alpha subunit, C-terminal)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05862g00017.1	sp|A8GCS6|NQOR_SERP5	***-	NAD(P)H dehydrogenase (quinone)	IPR029039 (Flavoprotein-like)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity)
Niben101Scf02164g01001.1	AT1G21000.1	***-	PLATZ transcription factor family protein LENGTH=246	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf01697g10005.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07516g04019.1	AT2G45540.2	***-	WD-40 repeat family protein / beige-related LENGTH=3001	IPR000409 (BEACH domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR023362 (PH-BEACH domain)	GO:0005515 (protein binding)
Niben101Scf07398g00003.1	emb|CDY04159.1|	*-*-	BnaA09g19370D [Brassica napus]		
Niben101Scf08785g02007.1	sp|Q9SXA1|P4KA1_ARATH	*-*-	Phosphatidylinositol 4-kinase alpha 1		
Niben101Scf15579g00003.1	sp|Q9FUR2|IP5P2_ARATH	*-**	Type I inositol 1,4,5-trisphosphate 5-phosphatase 2	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf02899g06004.1	ref|NP_181089.1|	***-	late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] gb|AAC36175.1| similar to harpin-induced protein hin1 from tobacco [Arabidopsis thaliana] gb|AEC09110.1| late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf01180g07004.1	sp|Q5E971|TMEDA_BOVIN	***-	Transmembrane emp24 domain-containing protein 10	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf01060g01010.1	sp|Q20BM9|CSPL1_PANGI	*-*-	CASP-like protein 1	IPR005735 (Zinc finger, LSD1-type), IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf06094g07003.1	sp|Q5PP37|ATXR2_ARATH	***-	Histone-lysine N-methyltransferase ATXR2	IPR001214 (SET domain), IPR002893 (Zinc finger, MYND-type)	GO:0005515 (protein binding)
Niben101Scf00069g04002.1	sp|A4J4I4|GLGA_DESRM	*-*-	Glycogen synthase	IPR013534 (Starch synthase, catalytic domain)	
Niben101Scf07722g00001.1	sp|Q0WPR4|SCP34_ARATH	****	Serine carboxypeptidase-like 34	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04871g04001.1	AT4G27570.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=453	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06090g01004.1	gb|KFF77694.1|	***-	gluconolaconase [Serratia marcescens]	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf00944g06005.1	sp|Q9T043|RL142_ARATH	***-	60S ribosomal protein L14-2	IPR002784 (Ribosomal protein L14), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02531g02003.1	AT4G18780.1	****	cellulose synthase family protein LENGTH=985	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf01506g02001.1	sp|Q41238|LOX16_SOLTU	***-	Linoleate 9S-lipoxygenase 6	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04196g00003.1	sp|P26573|RBS8_NICPL	***-	Ribulose bisphosphate carboxylase small chain 8B, chloroplastic	IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain)	
Niben101Scf00807g00001.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf37922g00002.1	sp|Q15560|TCEA2_HUMAN	*-**	Transcription elongation factor A protein 2	IPR003618 (Transcription elongation factor S-II, central domain), IPR016492 (Transcription elongation factor, TFIIS-related), IPR017923 (Transcription factor IIS, N-terminal)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0008270 (zinc ion binding), GO:0032784 (regulation of DNA-templated transcription, elongation)
Niben101Scf00573g01014.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]		
Niben101Scf11465g00006.1	sp|Q8S8T8|PCR10_ARATH	***-	Protein PLANT CADMIUM RESISTANCE 10	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Ctg15559g00001.1	AT5G04670.1	***-	Enhancer of polycomb-like transcription factor protein LENGTH=766	IPR019542 (Enhancer of polycomb-like, N-terminal), IPR024943 (Enhancer of polycomb protein)	GO:0032777 (Piccolo NuA4 histone acetyltransferase complex), GO:0035267 (NuA4 histone acetyltransferase complex)
Niben101Scf05434g01006.1	sp|Q0P5H9|TTC5_BOVIN	*-*-	Tetratricopeptide repeat protein 5		
Niben101Scf00046g07016.1	sp|Q3T0R4|DRS7B_BOVIN	*-**	Dehydrogenase/reductase SDR family member 7B	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf06249g02003.1	sp|Q2KIG2|WDR5_BOVIN	--*-	WD repeat-containing protein 5	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf35531g00006.1	AT4G08480.1	*-**	mitogen-activated protein kinase kinase kinase 9 LENGTH=773	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12680g03016.1	AT3G26100.2	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=532	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf00453g03018.1	AT3G57280.1	***-	Transmembrane proteins 14C LENGTH=226	IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane)
Niben101Scf04934g01001.1	gb|KEH41865.1|	*-*-	MD-like lipid recognition domain protein/ML domain protein [Medicago truncatula]		
Niben101Scf06710g00008.1	AT5G35570.1	***-	O-fucosyltransferase family protein LENGTH=652	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf22702g00005.1	sp|A7HT39|SUCC_PARL1	***-	Succinyl-CoA ligase [ADP-forming] subunit beta	IPR005809 (Succinyl-CoA synthetase, beta subunit), IPR016102 (Succinyl-CoA synthetase-like)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0046872 (metal ion binding)
Niben101Scf02207g08008.1	AT2G41660.1	*-*-	Protein of unknown function, DUF617 LENGTH=297	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf03579g04001.1			Unknown protein		
Niben101Scf00629g01001.1	ref|WP_014243176.1|	****	2-oxoglutarate translocator [Bacteriovorax marinus] ref|YP_005034360.1| putative membrane transport protein [Bacteriovorax marinus SJ] emb|CBW25389.1| putative membrane transport protein [Bacteriovorax marinus SJ]	IPR001898 (Sodium/sulphate symporter)	GO:0005215 (transporter activity), GO:0006814 (sodium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00898g00026.1	sp|Q9ZUE9|PP149_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Ctg08402g00001.1	emb|CDY63594.1|	*-*-	BnaUnng00820D [Brassica napus] emb|CDY19656.1| BnaC09g29120D [Brassica napus] emb|CDX95222.1| BnaC09g16480D [Brassica napus] emb|CDX71647.1| BnaC09g26880D [Brassica napus]		
Niben101Scf07741g03006.1	emb|CDY18461.1|	--*-	BnaA04g21260D [Brassica napus]		
Niben101Scf00984g11002.1	sp|Q39262|ZFP3_ARATH	*-*-	Zinc finger protein 3	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01985g01012.1	sp|Q56XP4|NHX2_ARATH	****	Sodium/hydrogen exchanger 2	IPR006153 (Cation/H+ exchanger), IPR018422 (Cation/H+ exchanger, CPA1 family)	GO:0005774 (vacuolar membrane), GO:0005886 (plasma membrane), GO:0006812 (cation transport), GO:0006814 (sodium ion transport), GO:0006885 (regulation of pH), GO:0009651 (response to salt stress), GO:0015299 (solute:proton antiporter activity), GO:0015385 (sodium:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055075 (potassium ion homeostasis), GO:0055085 (transmembrane transport)
Niben101Scf15166g03009.1	gb|AGV54804.1|	*-*-	transport protein SFT2-like protein [Phaseolus vulgaris]		
Niben101Scf01192g06006.1	sp|A4XYX3|LIPA_PSEMY	****	Lipoyl synthase	IPR003698 (Lipoyl synthase)	GO:0003824 (catalytic activity), GO:0009107 (lipoate biosynthetic process), GO:0016992 (lipoate synthase activity), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf00440g04009.1	sp|Q6NQ79|ARID4_ARATH	--*-	AT-rich interactive domain-containing protein 4		
Niben101Scf01693g03008.1			Unknown protein		
Niben101Scf00318g11014.1	ref|XP_007008944.1|	*-*-	Transducin family protein / WD-40 repeat family protein, putative isoform 4 [Theobroma cacao] gb|EOY17754.1| Transducin family protein / WD-40 repeat family protein, putative isoform 4 [Theobroma cacao]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Ctg16180g00004.1	sp|Q9FIX3|PP407_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04113g17021.1	ref|XP_002302027.2|	*-*-	isoflavone reductase family protein [Populus trichocarpa] gb|EEE81300.2| isoflavone reductase family protein [Populus trichocarpa]		
Niben101Scf09424g03005.1	AT2G40490.1	****	Uroporphyrinogen decarboxylase LENGTH=394	IPR006361 (Uroporphyrinogen decarboxylase HemE)	GO:0004853 (uroporphyrinogen decarboxylase activity), GO:0006779 (porphyrin-containing compound biosynthetic process)
Niben101Scf02626g07011.1	gb|ABA99444.2|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf00063g10004.1	sp|P27521|CA4_ARATH	***-	Chlorophyll a-b binding protein 4, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf01283g00015.1	ref|XP_002533815.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF28568.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf14778g00002.1	sp|Q6BSS5|ESF2_DEBHA	*-*-	Pre-rRNA-processing protein ESF2		
Niben101Scf00369g24024.1	emb|CDY53340.1|	*-*-	BnaCnng24980D [Brassica napus]		
Niben101Scf00415g07013.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf20935g00017.1	sp|Q9SCV5|BGAL7_ARATH	***-	Beta-galactosidase 7	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00643g01010.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY), IPR018872 (Zn-cluster domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf18308g01001.1	sp|P56335|IF5A3_SOLTU	****	Eukaryotic translation initiation factor 5A-3	IPR001884 (Translation elongation factor IF5A)	GO:0003723 (RNA binding), GO:0003746 (translation elongation factor activity), GO:0006452 (translational frameshifting), GO:0043022 (ribosome binding), GO:0045901 (positive regulation of translational elongation), GO:0045905 (positive regulation of translational termination)
Niben101Scf00055g00006.1	gb|KEH42510.1|	*-*-	Serine/Threonine-kinase, putative [Medicago truncatula]		
Niben101Scf10448g01003.1	AT4G18030.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=621	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf19533g00007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02253g14010.1	sp|Q9LFR3|GASAE_ARATH	*-*-	Gibberellin-regulated protein 14	IPR003854 (Gibberellin regulated protein)	
Niben101Scf10289g00007.1	ref|XP_002517792.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF44599.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00777g05017.1	AT2G25660.1	*-*-	embryo defective 2410 LENGTH=2166	IPR007452 (Protein of unknown function DUF490)	
Niben101Scf13734g00002.1			Unknown protein		
Niben101Scf07528g00003.1	sp|Q6MFZ5|TRI39_RAT	--*-	E3 ubiquitin-protein ligase TRIM39	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07926g05011.1	AT4G31990.3	***-	aspartate aminotransferase 5 LENGTH=462	IPR000796 (Aspartate/other aminotransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf24225g00007.1	sp|Q1PE04|FBL25_ARATH	***-	F-box/LRR-repeat protein 25	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf11154g00003.1	sp|F1MCA7|LRRC7_BOVIN	*-*-	Leucine-rich repeat-containing protein 7	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02538g06006.1	sp|Q9SIA4|MATE5_ARATH	*-*-	MATE efflux family protein 5	IPR002528 (Multi antimicrobial extrusion protein)	
Niben101Scf06613g03016.1	sp|Q0WQ63|ERDL8_ARATH	*-*-	Sugar transporter ERD6-like 8		
Niben101Scf01269g08008.1	AT1G50700.1	****	calcium-dependent protein kinase 33 LENGTH=521	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06603g02011.1	ref|NP_001232838.1|	*-**	non-green plastid inner envelope membrane protein [Zea mays] gb|ACG33245.1| non-green plastid inner envelope membrane protein [Zea mays]	IPR002828 (Survival protein SurE-like phosphatase/nucleotidase), IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane), GO:0016787 (hydrolase activity)
Niben101Scf05732g03004.1	sp|Q4V7B8|RNF44_RAT	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01110g00002.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Ctg12776g00001.1	sp|Q8S3D2|BH087_ARATH	*-*-	Transcription factor bHLH87	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03293g01010.1	sp|P41129|RL132_BRANA	***-	60S ribosomal protein L13-2	IPR001380 (Ribosomal protein L13e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02125g00014.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf01545g03001.1	sp|Q9STL1|C71AM_ARATH	***-	Cytochrome P450 71A22	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02908g01001.1	AT3G51370.1	****	Protein phosphatase 2C family protein LENGTH=379	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf10465g00014.1	sp|P46423|GSTF_HYOMU	***-	Glutathione S-transferase	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf03436g02006.1	sp|Q9LEX0|P2A13_ARATH	***-	F-box protein PP2-A13	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf01623g04023.1	sp|Q9SY66|FRS11_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 11	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf02160g06060.1	sp|B8J860|RS10_ANAD2	--*-	30S ribosomal protein S10	IPR001848 (Ribosomal protein S10), IPR027486 (Ribosomal protein S10 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02688g06007.1			Unknown protein		
Niben101Scf00542g01003.1	sp|Q9YHB5|CND3_XENLA	****	Condensin complex subunit 3	IPR016024 (Armadillo-type fold), IPR018247 (EF-Hand 1, calcium-binding site), IPR025977 (Nuclear condensin complex subunit 3, C-terminal domain), IPR027165 (Condensin complex subunit 3)	GO:0000796 (condensin complex), GO:0005488 (binding), GO:0007076 (mitotic chromosome condensation)
Niben101Scf02297g09009.1	sp|Q5JNJ5|ENL1_ORYSJ	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf07695g01020.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03098g00011.1	sp|Q8RX80|CRK18_ARATH	*-**	Cysteine-rich receptor-like protein kinase 18	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01020g04001.1	sp|Q6NM73|CRR3_ARATH	***-	Cysteine-rich repeat secretory protein 3	IPR002902 (Gnk2-homologous domain)	
Niben101Scf07015g00008.1	AT1G32580.1	***-	plastid developmental protein DAG, putative LENGTH=229		
Niben101Scf14939g01021.1	sp|Q7ZZ00|ZN511_DANRE	***-	Zinc finger protein 511	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf00568g04060.1	sp|Q8S8V2|YCF2A_ATRBE	*-*-	Protein Ycf2 A	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf18662g00007.1	sp|Q8TZ14|GLMS_METKA	*-*-	Glutamine--fructose-6-phosphate aminotransferase [isomerizing]	IPR029055 (Nucleophile aminohydrolases, N-terminal), IPR029057 (Phosphoribosyltransferase-like)	GO:0008152 (metabolic process), GO:0009116 (nucleoside metabolic process)
Niben101Scf06836g01002.1	sp|A2YS06|ATG8C_ORYSI	***-	Autophagy-related protein 8C	IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain)	
Niben101Scf09241g00006.1	AT2G46260.1	***-	BTB/POZ/Kelch-associated protein LENGTH=561	IPR008974 (TRAF-like), IPR011333 (BTB/POZ fold), IPR011705 (BTB/Kelch-associated)	GO:0005515 (protein binding)
Niben101Scf03562g04001.1	ref|YP_002720024.1|	*-*-	Ycf1 [Nicotiana tabacum]		
Niben101Scf04934g00005.1	sp|Q5K4R0|MAD47_ORYSJ	*-*-	MADS-box transcription factor 47	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01517g08009.1	ref|NP_001117385.1|	--*-	Magnesium transporter CorA-like family protein [Arabidopsis thaliana] gb|AEE31137.1| Magnesium transporter CorA-like family protein [Arabidopsis thaliana]		
Niben101Scf14158g00005.1	ref|XP_007047192.1|	--*-	SAP domain-containing protein, putative isoform 1 [Theobroma cacao] gb|EOX91349.1| SAP domain-containing protein, putative isoform 1 [Theobroma cacao]	IPR003034 (SAP domain)	
Niben101Scf01237g13017.1	sp|O22874|EXPA8_ARATH	***-	Expansin-A8	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf05385g01018.1	sp|Q9QUR6|PPCE_MOUSE	****	Prolyl endopeptidase	IPR002470 (Peptidase S9A, prolyl oligopeptidase), IPR023302 (Peptidase S9A, N-terminal domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0070008 (serine-type exopeptidase activity)
Niben101Scf11737g00009.1			Unknown protein		
Niben101Scf10834g02008.1	sp|A9HRD8|ACP_GLUDA	***-	Acyl carrier protein	IPR003231 (Acyl carrier protein (ACP)), IPR009081 (Acyl carrier protein-like)	GO:0006633 (fatty acid biosynthetic process)
Niben101Scf03515g00091.1	sp|Q06GR0|PSAA_PIPCE	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf06700g04008.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07805g02017.1	sp|A7X2Y0|DNAJ_STAA1	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf04875g00017.1	sp|A6LXP5|NUON_CLOB8	--*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf05610g03019.1	sp|P41099|RLA2_PARAR	*-*-	60S acidic ribosomal protein P2	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf14630g01004.1			Unknown protein		
Niben101Scf00332g10003.1	sp|A3MKJ8|CLPP_BURM7	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05177g01031.1	AT5G23370.1	***-	GRAM domain-containing protein / ABA-responsive protein-related LENGTH=219	IPR004182 (GRAM domain)	
Niben101Scf05468g10027.1	sp|Q9Y305|ACOT9_HUMAN	--*-	Acyl-coenzyme A thioesterase 9, mitochondrial	IPR029069 (HotDog domain)	
Niben101Scf07275g01009.1	ref|WP_029292314.1|	***-	glyoxalase [Pseudomonas fluorescens]	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf02296g00013.1	sp|Q99PL6|UBXN6_MOUSE	*-*-	UBX domain-containing protein 6	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Ctg15582g00003.1	sp|O04714|GCR1_ARATH	*-*-	G-protein coupled receptor 1	IPR022343 (GCR1-cAMP receptor)	
Niben101Scf10411g00001.1	gb|AHF12889.1|	--*-	cysteine desulfurase [Barnesiella viscericola DSM 18177]		
Niben101Scf08045g01001.1	sp|P21885|SPEA_BACSU	***-	Arginine decarboxylase	IPR008286 (Orn/Lys/Arg decarboxylase, C-terminal), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf06019g01031.1	sp|A4QJZ7|CYF_OLIPU	--*-	Apocytochrome f	IPR002325 (Cytochrome f), IPR024094 (Cytochrome f large domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0015979 (photosynthesis), GO:0020037 (heme binding), GO:0031361 (integral component of thylakoid membrane)
Niben101Scf01232g04001.1	emb|CDX89403.1|	***-	BnaA01g14900D [Brassica napus]		
Niben101Scf03963g00005.1	sp|P42696|RBM34_HUMAN	--**	RNA-binding protein 34	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00332g12024.1	sp|Q9LQC8|ARF2A_ARATH	*-*-	ADP-ribosylation factor 2-A	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf02093g01004.1	ref|XP_007049519.1|	***-	Mediator of RNA polymerase II transcription subunit 19 [Theobroma cacao] gb|EOX93676.1| Mediator of RNA polymerase II transcription subunit 19 [Theobroma cacao]		
Niben101Scf04431g03005.1	AT5G41340.1	*-*-	ubiquitin conjugating enzyme 4 LENGTH=187	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf18129g00016.1	emb|CDY65732.1|	*-*-	BnaCnng48510D [Brassica napus]		
Niben101Scf11937g02002.1			Unknown protein		
Niben101Scf03375g02017.1	sp|Q9C5H4|Y3627_ARATH	***-	VHS domain-containing protein	IPR008942 (ENTH/VHS), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf09628g02002.1	ref|XP_002533735.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF28647.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01818g03023.1	gb|AES68213.2|	*-**	mediator of RNA polymerase II transcription subunit 15a, putative [Medicago truncatula]	IPR003101 (Coactivator CBP, KIX domain)	GO:0003712 (transcription cofactor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf30182g00004.1	sp|Q80YV3|TRRAP_MOUSE	*-*-	Transformation/transcription domain-associated protein	IPR014009 (PIK-related kinase)	GO:0005515 (protein binding)
Niben101Scf09225g04003.1	emb|CDX74885.1|	--*-	BnaA05g06310D [Brassica napus]		
Niben101Scf01888g07004.1	sp|O74111|RFC3_BLAAD	****	Replication factor C subunit 3	IPR003959 (ATPase, AAA-type, core), IPR008921 (DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006260 (DNA replication)
Niben101Scf00391g02002.1	sp|Q9XHP1|2SS1_SESIN	--*-	2S seed storage protein 1	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00340g00006.1	sp|Q9M2Q6|SPL15_ARATH	*-**	Squamosa promoter-binding-like protein 15	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf02232g02002.1	sp|B0Z4M7|RPOC2_OENAR	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf02180g00029.1			Unknown protein		
Niben101Scf05346g09028.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf01777g03001.1	AT2G26170.1	***-	cytochrome P450, family 711, subfamily A, polypeptide 1 LENGTH=522	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03393g00014.1	sp|P0C8Q7|PP369_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf08702g02004.1	AT1G65730.1	***-	YELLOW STRIPE like 7 LENGTH=688	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf03308g02013.1	emb|CDY45104.1|	***-	BnaA02g04720D [Brassica napus]		
Niben101Scf07820g00005.1	AT5G02580.1	***-	Plant protein 1589 of unknown function LENGTH=91	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf09357g00005.1	sp|O95208|EPN2_HUMAN	*-*-	Epsin-2	IPR008942 (ENTH/VHS)	
Niben101Scf08470g05003.1			Unknown protein		
Niben101Scf19295g00010.1	sp|A4QK10|RPOB_ARAHI	*-**	DNA-directed RNA polymerase subunit beta	IPR007644 (RNA polymerase, beta subunit, protrusion), IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf15907g00013.1	AT4G35690.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=284	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf01281g06010.1	sp|Q5PP70|NTM1_ARATH	*-**	Alpha N-terminal protein methyltransferase 1	IPR008576 (Protein of unknown function DUF858, methyltransferase-like)	GO:0008168 (methyltransferase activity)
Niben101Scf01427g00001.1	sp|Q17R01|FXL14_BOVIN	*-*-	F-box/LRR-repeat protein 14	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf04993g00002.1			Unknown protein		
Niben101Scf09790g00019.1	AT4G00150.1	*-*-	GRAS family transcription factor LENGTH=558	IPR005202 (Transcription factor GRAS)	
Niben101Scf01252g00003.1	AT4G39700.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=158	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf05827g00005.1	sp|P62427|RL7A_NANEQ	*-*-	50S ribosomal protein L7Ae	IPR018492 (Ribosomal protein L7Ae/L8/Nhp2 family), IPR029064 (50S ribosomal protein L30e-like)	GO:0003723 (RNA binding), GO:0005730 (nucleolus)
Niben101Scf02821g14006.1	AT3G24140.1	*-*-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=414	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf11266g00004.1	sp|F4I2J8|CATIN_ARATH	***-	Cactin	IPR006501 (Pectinesterase inhibitor domain), IPR018816 (Cactin, central domain), IPR019134 (Cactin, C-terminal)	GO:0004857 (enzyme inhibitor activity), GO:0005515 (protein binding), GO:0030599 (pectinesterase activity)
Niben101Scf28037g00003.1	sp|P09229|CYT1_ORYSJ	--**	Cysteine proteinase inhibitor 1	IPR000010 (Proteinase inhibitor I25, cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf02461g03003.1	sp|Q96GG9|DCNL1_HUMAN	***-	DCN1-like protein 1	IPR009060 (UBA-like), IPR014764 (Defective-in-cullin neddylation protein)	GO:0005515 (protein binding)
Niben101Scf06081g00006.1	ref|XP_003614078.1|	--*-	HGWP repeat containing protein-like protein [Medicago truncatula]		
Niben101Scf05811g06014.1	AT5G59460.1	***-	scarecrow-like transcription factor 11 (SCL11) LENGTH=172	IPR019324 (M-phase phosphoprotein 6)	
Niben101Scf02688g02013.1	AT5G60900.1	****	receptor-like protein kinase 1 LENGTH=748	IPR000858 (S-locus glycoprotein), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf15536g01001.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00056g07009.1	sp|Q6L8F9|ZIP6_ORYSJ	****	Zinc transporter 6	IPR003689 (Zinc/iron permease)	GO:0005385 (zinc ion transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport), GO:0071577 (zinc ion transmembrane transport)
Niben101Scf08516g00009.1	sp|P84634|DCL4_ARATH	--*-	Dicer-like protein 4		
Niben101Scf07725g00005.1	sp|Q49SP5|TPGAS_POGCB	*-**	Germacrene A synthase	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf08884g00010.1	AT2G39120.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=387	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf06420g01001.1	sp|Q9LJX1|PRE5_ARATH	***-	Transcription factor PRE5	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf18667g01002.1	AT1G21326.1	***-	VQ motif-containing protein LENGTH=239	IPR008889 (VQ)	
Niben101Scf03224g01003.1	AT1G16190.1	****	Rad23 UV excision repair protein family LENGTH=368	IPR004806 (UV excision repair protein Rad23), IPR009060 (UBA-like), IPR029071 (Ubiquitin-related domain)	GO:0003684 (damaged DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006289 (nucleotide-excision repair), GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
Niben101Scf02523g00007.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf01991g04009.1	sp|P26573|RBS8_NICPL	***-	Ribulose bisphosphate carboxylase small chain 8B, chloroplastic	IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain)	
Niben101Scf07608g03009.1	sp|Q8RXN0|AB11G_ARATH	***-	ABC transporter G family member 11	IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0016020 (membrane)
Niben101Scf02160g01001.1	gb|AES76641.2|	*-*-	calmodulin-binding-like protein [Medicago truncatula]		
Niben101Scf05764g02002.1	sp|Q9FJZ9|PER72_ARATH	****	Peroxidase 72	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01802g00010.1	AT5G67080.1	*-*-	mitogen-activated protein kinase kinase kinase 19 LENGTH=344	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02042g01009.1	sp|A9MQL9|UXAC_SALAR	--*-	Uronate isomerase		
Niben101Scf10635g02008.1	sp|Q9ZU97|VAC14_ARATH	***-	Protein VAC14 homolog	IPR016024 (Armadillo-type fold), IPR021841 (Vacuolar protein 14 C-terminal Fig4-binding domain), IPR026825 (Vacuole morphology and inheritance protein 14)	GO:0005488 (binding), GO:0043550 (regulation of lipid kinase activity), GO:0070772 (PAS complex)
Niben101Scf02468g06009.1	sp|P25793|CYSP2_HAECO	****	Cathepsin B-like cysteine proteinase 2	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01623g00001.1			Unknown protein		
Niben101Scf02124g01011.1	ref|NP_001061425.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAF23339.1| Os08g0272000, partial [Oryza sativa Japonica Group]		
Niben101Scf01423g05012.1	gb|ABF95707.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf05300g00011.1	sp|P53800|FDFT_NICBE	***-	Squalene synthase	IPR002060 (Squalene/phytoene synthase)	GO:0004310 (farnesyl-diphosphate farnesyltransferase activity), GO:0008610 (lipid biosynthetic process), GO:0009058 (biosynthetic process), GO:0016021 (integral component of membrane), GO:0016740 (transferase activity), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf00069g00005.1	sp|Q08211|DHX9_HUMAN	*-**	ATP-dependent RNA helicase A	IPR000571 (Zinc finger, CCCH-type), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0046872 (metal ion binding)
Niben101Scf04724g04002.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf02822g10013.1	sp|P29162|ASOL_TOBAC	***-	L-ascorbate oxidase homolog	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09599g00012.1	sp|Q10FZ7|YAB2_ORYSJ	***-	Protein YABBY 2	IPR006780 (YABBY protein)	
Niben101Scf08211g00002.1	sp|F4K4J0|THO5B_ARATH	*-*-	THO complex subunit 5B	IPR019163 (THO complex, subunit 5)	
Niben101Scf16313g00003.1	gb|AIT42219.1|	-**-	metallocarboxypeptidase inhibitor [Solanum tuberosum]		
Niben101Scf14427g00009.1			Unknown protein		
Niben101Scf11689g02007.1	sp|Q6RVV4|TIC32_PEA	*-*-	Short-chain dehydrogenase TIC 32, chloroplastic		
Niben101Scf00369g11018.1	sp|Q6DUX3|TCTP_SOLLC	***-	Translationally-controlled tumor protein homolog	IPR018105 (Translationally controlled tumour protein)	
Niben101Scf03729g00010.1	sp|O80831|BAM7_ARATH	*-*-	Beta-amylase 7	IPR008540 (BZR1, transcriptional repressor)	
Niben101Scf08637g01001.1	sp|P46512|CAH1_FLALI	***-	Carbonic anhydrase 1	IPR001765 (Carbonic anhydrase)	GO:0004089 (carbonate dehydratase activity), GO:0008270 (zinc ion binding), GO:0015976 (carbon utilization)
Niben101Ctg14905g00002.1	AT3G05420.2	*-*-	acyl-CoA binding protein 4 LENGTH=669		
Niben101Scf01307g02003.1	ref|XP_002529714.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF32680.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06216g01013.1	sp|Q8LEM8|RL373_ARATH	***-	60S ribosomal protein L37-3	IPR001569 (Ribosomal protein L37e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00094g01002.1	sp|Q9FJ17|DI197_ARATH	***-	Protein DEHYDRATION-INDUCED 19 homolog 7	IPR008598 (Drought induced 19 protein-like, zinc-binding domain), IPR027935 (Protein dehydration-induced 19, C-terminal)	
Niben101Scf10007g00001.1	AT5G19473.1	***-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=99		
Niben101Scf01218g01003.1	sp|Q8GY42|NAC25_ARATH	--**	NAC transcription factor 25	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03446g01002.1	sp|Q9FN94|RLK7_ARATH	--**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08390g00005.1	sp|Q8LA16|ALFL7_ARATH	***-	PHD finger protein ALFIN-LIKE 7	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR021998 (Alfin)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0042393 (histone binding)
Niben101Ctg15034g00003.1	sp|P54654|CAP_DICDI	***-	Adenylyl cyclase-associated protein	IPR001837 (Adenylate cyclase-associated CAP), IPR017901 (C-CAP/cofactor C-like domain)	GO:0000902 (cell morphogenesis), GO:0003779 (actin binding), GO:0007010 (cytoskeleton organization)
Niben101Scf02078g08039.1	AT3G13784.1	***-	cell wall invertase 5 LENGTH=569	IPR001362 (Glycoside hydrolase, family 32), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04643g04013.1	sp|Q8LE94|RING3_ARATH	--*-	E3 ubiquitin-protein ligase	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08015g01004.1			Unknown protein		
Niben101Scf02449g02005.1	emb|CDY10434.1|	***-	BnaCnng03350D [Brassica napus]		
Niben101Scf12708g02026.1	AT2G31820.1	***-	Ankyrin repeat family protein LENGTH=662	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf00164g02016.1	sp|A7Y3H4|PSBB_IPOPU	*-**	Photosystem II CP47 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf00592g07008.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027367 (YMGG-like Gly-zipper)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Ctg05178g00001.1	sp|Q6IQX0|KD5BB_DANRE	*-*-	Lysine-specific demethylase 5B-B	IPR003347 (JmjC domain), IPR003349 (JmjN domain)	
Niben101Scf01892g01001.1	sp|Q5NQ55|RL14_ZYMMO	****	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf01750g06001.1			Unknown protein		
Niben101Scf01739g03001.1	ref|XP_007014955.1|	*-*-	Far1-related sequence 4 isoform 3 [Theobroma cacao] gb|EOY32574.1| Far1-related sequence 4 isoform 3 [Theobroma cacao]	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf01409g12007.1	AT4G30360.1	****	cyclic nucleotide-gated channel 17 LENGTH=720	IPR005821 (Ion transport domain), IPR014710 (RmlC-like jelly roll fold)	GO:0005216 (ion channel activity), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf08045g03001.1	AT5G48930.1	****	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase LENGTH=433	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf10576g01015.1	gb|ADQ28399.1|	*-*-	transport membrane protein, partial (mitochondrion) [Butomus umbellatus]		
Niben101Scf04422g13002.1	sp|Q6NKW9|E138_ARATH	***-	Glucan endo-1,3-beta-glucosidase 8	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02749g01001.1	AT1G17420.1	***-	lipoxygenase 3 LENGTH=919	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00585g01003.1	sp|Q14442|PIGH_HUMAN	--**	Phosphatidylinositol N-acetylglucosaminyltransferase subunit H	IPR019328 (GPI-GlcNAc transferase complex, PIG-H component, conserved domain)	GO:0017176 (phosphatidylinositol N-acetylglucosaminyltransferase activity)
Niben101Scf07182g00017.1	sp|Q9M1S9|CDT1B_ARATH	***-	CDT1-like protein b	IPR014939 (CDT1 Geminin-binding domain-like)	
Niben101Scf01661g02017.1	sp|Q9LDF2|LAG11_ARATH	***-	LAG1 longevity assurance homolog 1	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf01980g07012.1			Unknown protein		
Niben101Scf00135g03007.1	AT4G38840.1	***-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02907g07010.1	sp|P69103|GBLP_TRYBB	-***	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf13577g01008.1	sp|Q40831|TBA1_PELFA	***-	Tubulin alpha-1 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf02517g12015.1	sp|Q86AS6|SYHC_DICDI	--*-	Histidine--tRNA ligase, cytoplasmic	IPR004154 (Anticodon-binding)	
Niben101Scf01319g04019.1	AT1G30755.1	***-	Protein of unknown function (DUF668) LENGTH=615	IPR007700 (Protein of unknown function DUF668), IPR021864 (Protein of unknown function DUF3475)	
Niben101Scf24398g00002.1	sp|P0C8Q7|PP369_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03070g07004.1	sp|Q9XSR3|RBM47_CANFA	*-**	RNA-binding protein 47	IPR001202 (WW domain), IPR002343 (Paraneoplastic encephalomyelitis antigen), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005515 (protein binding)
Niben101Scf04395g00003.1	AT4G35160.1	****	O-methyltransferase family protein LENGTH=382	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf00380g00001.1	AT4G16150.1	*-**	calmodulin binding;transcription regulators LENGTH=923	IPR000048 (IQ motif, EF-hand binding site), IPR005559 (CG-1 DNA-binding domain), IPR020683 (Ankyrin repeat-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf08293g01002.1	sp|Q43804|OLEO1_PRUDU	***-	Oleosin 1	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf00647g01007.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Ctg16210g00009.1	sp|P55200|KMT2A_MOUSE	*-**	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR003105 (SRA-YDG), IPR003616 (Post-SET domain), IPR007728 (Pre-SET domain), IPR015947 (PUA-like domain), IPR025794 (Histone H3-K9 methyltransferase, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016571 (histone methylation), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0042393 (histone binding)
Niben101Scf04568g01008.1	AT3G16857.2	*-*-	response regulator 1 LENGTH=690	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily), IPR017053 (Response regulator, plant B-type)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01866g02002.1	gb|AIW66448.1|	***-	11S seed storage protein [Oryza rufipogon]	IPR006044 (11-S seed storage protein, plant)	GO:0045735 (nutrient reservoir activity)
Niben101Scf00576g02034.1	emb|CDX81737.1|	--*-	BnaC08g38640D [Brassica napus]		
Niben101Scf00819g01009.1	AT5G05365.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=77	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf01738g04010.1	AT3G09070.1	***-	Protein of unknown function (DUF740) LENGTH=685	IPR008004 (Uncharacterised protein family UPF0503)	
Niben101Scf12986g00001.1	sp|Q9M8J9|BPM2_ARATH	***-	BTB/POZ and MATH domain-containing protein 2	IPR008974 (TRAF-like), IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf09552g01026.1			Unknown protein		
Niben101Scf11447g00001.1	emb|CDX97158.1|	***-	BnaC09g44670D [Brassica napus]	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf05135g00001.1	sp|Q9C626|FB37_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf00149g06012.1	sp|Q8VYP0|SCO11_ARATH	****	Protein SCO1 homolog 1, mitochondrial	IPR003782 (Copper chaperone SCO1/SenC), IPR012336 (Thioredoxin-like fold)	GO:0005507 (copper ion binding), GO:0005743 (mitochondrial inner membrane), GO:0006825 (copper ion transport), GO:0006878 (cellular copper ion homeostasis), GO:0008535 (respiratory chain complex IV assembly)
Niben101Ctg13406g00001.1	sp|Q9FZ03|MAN2_SOLLC	*-*-	Mannan endo-1,4-beta-mannosidase 2	IPR013781 (Glycoside hydrolase, catalytic domain)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf00447g02006.1	AT4G05400.1	***-	copper ion binding LENGTH=250		
Niben101Scf02405g05001.1	gb|AFJ52932.1|	*-*-	UDP-glycosyltransferase 1 [Linum usitatissimum]		
Niben101Scf07980g00002.1	sp|A4G9I1|TATB_HERAR	*-*-	Sec-independent protein translocase protein TatB		
Niben101Scf01281g09001.1	sp|Q84MA5|CAAT1_ARATH	****	Cationic amino acid transporter 1	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf15467g02024.1	sp|O48723|PLP2_ARATH	***-	Patatin-like protein 2	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf02210g01004.1	emb|CDY03924.1|	***-	BnaC07g11490D [Brassica napus]	IPR016340 (Ribosomal protein L31, mitochondrial)	
Niben101Scf05368g04009.1	sp|P70168|IMB1_MOUSE	***-	Importin subunit beta-1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01110g01005.1			Unknown protein	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf04674g02003.1	sp|A8AJF8|RIHA_CITK8	*-*-	Pyrimidine-specific ribonucleoside hydrolase RihA	IPR001910 (Inosine/uridine-preferring nucleoside hydrolase domain), IPR023186 (Inosine/uridine-preferring nucleoside hydrolase)	
Niben101Scf03851g02008.1	ref|XP_007033392.1|	***-	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1 [Theobroma cacao] gb|EOY04318.1| Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1 [Theobroma cacao]	IPR005344 (Uncharacterised protein family UPF0121)	GO:0016021 (integral component of membrane)
Niben101Scf05040g00009.1	sp|O80560|IP5PC_ARATH	****	Type I inositol 1,4,5-trisphosphate 5-phosphatase 12	IPR005135 (Endonuclease/exonuclease/phosphatase), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf04409g00008.1	AT3G44160.1	****	Outer membrane OMP85 family protein LENGTH=362	IPR000184 (Bacterial surface antigen (D15))	GO:0019867 (outer membrane)
Niben101Scf03214g01022.1	ref|NP_565550.1|	****	protein RER1C1 [Arabidopsis thaliana] RecName: Full=Protein RER1C; Short=AtRER1C [Arabidopsis thaliana] dbj|BAA33862.1| AtRER1C [Arabidopsis thaliana] gb|AAL47450.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAB87102.2| putative integral membrane protein [Arabidopsis thaliana] gb|AAM19906.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAM63458.1| putative integral membrane protein [Arabidopsis thaliana] gb|AEC07439.1| protein RER1C1 [Arabidopsis thaliana]	IPR004932 (Retrieval of early ER protein Rer1)	GO:0016021 (integral component of membrane)
Niben101Scf05330g02006.1	AT1G61870.1	***-	pentatricopeptide repeat 336 LENGTH=408	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04044g13014.1	dbj|BAB11196.1|	--*-	mutator-like transposase [Arabidopsis thaliana]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf06565g03004.1	sp|Q9DGI3|THIO_ICTPU	***-	Thioredoxin	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01243g01007.1	sp|O80856|ARC1A_ARATH	****	Actin-related protein 2/3 complex subunit 1A	IPR017383 (Actin-related protein 2/3 complex subunit 1)	GO:0005515 (protein binding), GO:0005885 (Arp2/3 protein complex), GO:0015629 (actin cytoskeleton), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf12383g01003.1	sp|Q9HC62|SENP2_HUMAN	*-*-	Sentrin-specific protease 2	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf15568g00034.1			Unknown protein		
Niben101Scf02026g02001.1	sp|Q43046|COMT1_POPKI	****	Caffeic acid 3-O-methyltransferase 1	IPR016461 (O-methyltransferase COMT-type), IPR022657 (Orn/DAP/Arg decarboxylase 2, conserved site), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf00369g00001.1	sp|Q567C6|ZN367_DANRE	--*-	Zinc finger protein 367	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf11609g01012.1	sp|Q8ZYF2|PSB1_PYRAE	****	Proteasome subunit beta 1	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf02360g04004.1	sp|Q92535|PIGC_HUMAN	****	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C	IPR009450 (Phosphatidylinositol N-acetylglucosaminyltransferase subunit C)	GO:0006506 (GPI anchor biosynthetic process), GO:0016021 (integral component of membrane), GO:0017176 (phosphatidylinositol N-acetylglucosaminyltransferase activity)
Niben101Scf03141g04017.1			Unknown protein		
Niben101Scf02936g04017.1	sp|O42993|FKBP_SCHPO	*-*-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf01596g06013.1	AT5G61910.1	*-*-	DCD (Development and Cell Death) domain protein LENGTH=738	IPR013989 (Development/cell death domain)	
Niben101Scf07942g00002.1	sp|D2XNQ8|FLOT1_MEDTR	***-	Flotillin-like protein 1	IPR001107 (Band 7 protein)	
Niben101Scf02595g02021.1	sp|Q54U63|LVSC_DICDI	*-*-	BEACH domain-containing protein lvsC	IPR000409 (BEACH domain), IPR023362 (PH-BEACH domain)	
Niben101Scf04626g00001.1	AT5G40240.2	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=382	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf03371g01004.1	sp|Q56X05|PPR15_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02622g11009.1	sp|Q9Z2D1|MTMR2_MOUSE	*-*-	Myotubularin-related protein 2	IPR029021 (Protein-tyrosine phosphatase-like)	GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf01781g01002.1	AT2G28790.1	***-	Pathogenesis-related thaumatin superfamily protein LENGTH=249	IPR001938 (Thaumatin)	
Niben101Scf01514g00004.1	AT3G02800.1	****	Tyrosine phosphatase family protein LENGTH=203	IPR004861 (Protein-tyrosine phosphatase, SIW14-like), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf00592g07007.1			Unknown protein		
Niben101Scf12708g02027.1			Unknown protein		
Niben101Scf04362g03006.1	sp|Q72YK9|MENE_BACC1	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf11903g01001.1	sp|Q944X7|AOP3V_ARATH	*-*-	2-oxoglutarate-dependent dioxygenase AOP3	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf03842g01002.1	AT2G18600.1	***-	Ubiquitin-conjugating enzyme family protein LENGTH=185	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf00747g02026.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf19091g00016.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR013992 (Adenylate cyclase-associated CAP, N-terminal), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0003779 (actin binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0007010 (cytoskeleton organization)
Niben101Scf03203g05021.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf01818g03020.1	sp|Q67XJ2|NFYBA_ARATH	***-	Nuclear transcription factor Y subunit B-10	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf09108g00005.1	AT1G02816.1	***-	Protein of unknown function, DUF538 LENGTH=166	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf04653g03013.1	sp|P04798|CP1A1_HUMAN	***-	Cytochrome P450 1A1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01356g00013.1	gb|ABE80133.2|	--*-	Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf13934g00008.1	sp|O95372|LYPA2_HUMAN	*-*-	Acyl-protein thioesterase 2	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf02929g06002.1			Unknown protein		
Niben101Scf03512g02010.1	sp|Q8BXJ9|TMM62_MOUSE	*-*-	Transmembrane protein 62	IPR029052 (Metallo-dependent phosphatase-like)	
Niben101Scf02929g04090.1	gb|AFI44296.1|	*-**	transport membrane protein, partial (mitochondrion) [Silene vulgaris]	IPR002033 (Sec-independent periplasmic protein translocase TatC)	GO:0016021 (integral component of membrane)
Niben101Scf10423g00001.1	AT5G20810.2	***-	SAUR-like auxin-responsive protein family LENGTH=190	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03121g02001.1	dbj|BAD66730.1|	-**-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf05649g02012.1	ref|XP_003593019.1|	***-	Membralin [Medicago truncatula] gb|AES63270.1| S3 self-incompatibility locus-linked pollen 3.15 protein [Medicago truncatula]	IPR019144 (Membralin)	
Niben101Scf00837g10008.1	AT1G30755.1	***-	Protein of unknown function (DUF668) LENGTH=615	IPR007700 (Protein of unknown function DUF668), IPR021864 (Protein of unknown function DUF3475)	
Niben101Scf03839g05003.1			Unknown protein		
Niben101Scf02175g00007.1	gb|ABA00785.1|	--*-	granule-bound starch synthase [Lycium sp. N-309]		
Niben101Scf03564g00007.1			Unknown protein		
Niben101Scf00110g02001.1	sp|B6VJS4|ROMT_VITVI	*-**	Trans-resveratrol di-O-methyltransferase	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity)
Niben101Scf02039g01002.1	AT3G04350.1	***-	Plant protein of unknown function (DUF946) LENGTH=567	IPR009291 (Vacuolar protein sorting-associated protein 62)	
Niben101Scf02362g00003.1	sp|Q5B4E7|PPID_EMENI	*-**	Peptidyl-prolyl cis-trans isomerase D	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf12797g00006.1	sp|O64890|GUN13_ARATH	***-	Endoglucanase 13	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf11756g01025.1	sp|Q8RWZ7|VHAA1_ARATH	****	V-type proton ATPase subunit a1	IPR002490 (V-type  ATPase, V0 complex, 116kDa subunit family)	GO:0000220 (vacuolar proton-transporting V-type ATPase, V0 domain), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf17477g00008.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf04764g03001.1	sp|A1B495|NUOD_PARDP	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04652g00027.1			Unknown protein		
Niben101Scf02223g06005.1	sp|Q5CZL1|GDAP2_XENTR	--*-	Ganglioside-induced differentiation-associated protein 2	IPR001251 (CRAL-TRIO domain)	
Niben101Scf02125g01006.1	sp|O04887|PME2_CITSI	****	Pectinesterase 2	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01435g00003.1	sp|F4I878|BLT_ARATH	***-	Protein BRANCHLESS TRICHOME		
Niben101Scf01326g07008.1	emb|CDX99259.1|	***-	BnaC05g33740D [Brassica napus]		
Niben101Scf13162g00010.1	sp|P81391|MYB05_ANTMA	*-*-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01188g00001.1	emb|CDY28341.1|	--*-	BnaC01g35110D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf06778g02003.1	emb|CDX70368.1|	***-	BnaC03g04520D [Brassica napus]	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf00173g06008.1	ref|XP_007047760.1|	*-*-	UDP-Glyc , putative [Theobroma cacao]		
Niben101Scf02139g05001.1	AT5G60800.2	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=302	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf04283g02014.1			Unknown protein		
Niben101Scf02359g00029.1	AT4G30780.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=589		
Niben101Scf18348g01035.1	AT4G01070.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05395g03020.1	sp|O24339|CATA_SOLAP	****	Catalase	IPR002226 (Catalase haem-binding site), IPR010582 (Catalase immune-responsive domain), IPR011614 (Catalase core domain), IPR018028 (Catalase, mono-functional, haem-containing), IPR020835 (Catalase-like domain), IPR024708 (Catalase active site)	GO:0004096 (catalase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02929g05019.1	sp|P93311|RM02_ARATH	***-	60S ribosomal protein L2, mitochondrial		
Niben101Scf06358g00004.1	dbj|BAH57854.1|	*-*-	tracheary element differentiation-related 7A [Zinnia violacea]	IPR013320 (Concanavalin A-like lectin/glucanase domain)	
Niben101Scf09799g00006.1	emb|CDY09502.1|	*-*-	BnaC02g20440D [Brassica napus]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf01054g14001.1	sp|Q41001|BCP_PEA	--*-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf00109g09004.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00132g03003.1	ref|XP_003602276.1|	*-*-	Protein ABIL2 [Medicago truncatula] gb|AES72527.1| ABIL1-like protein [Medicago truncatula]		
Niben101Scf04456g03002.1	sp|Q55E69|SYS1_DICDI	*-*-	Protein SYS1 homolog	IPR019185 (Integral membrane protein SYS1-related)	
Niben101Scf11738g00017.1	AT1G18040.1	****	cyclin-dependent kinase D1;3 LENGTH=391	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07728g02014.1	sp|Q9SX03|MCM33_MAIZE	****	DNA replication licensing factor MCM3 homolog 3	IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027925 (MCM N-terminal domain)	GO:0003677 (DNA binding), GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006270 (DNA replication initiation), GO:0042555 (MCM complex)
Niben101Scf04627g00001.1	sp|O24160|TGA21_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02509g12004.1	sp|A0KAS4|TRML_BURCH	****	tRNA (cytidine(34)-2'-O)-methyltransferase	IPR029028 (Alpha/beta knot methyltransferases)	GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0008173 (RNA methyltransferase activity)
Niben101Scf02996g08008.1	AT5G13180.1	*-*-	NAC domain containing protein 83 LENGTH=252	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05670g00005.1	AT1G49330.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=331		
Niben101Scf02479g01017.1	sp|O80434|LAC4_ARATH	*-*-	Laccase-4	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02122g00010.1	AT4G36090.3	****	oxidoreductase, 2OG-Fe(II) oxygenase family protein LENGTH=520	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf13141g02002.1	sp|Q9SR92|STR10_ARATH	***-	Rhodanese-like domain-containing protein 10	IPR001763 (Rhodanese-like domain)	
Niben101Scf01326g11035.1	sp|P54001|P4HA1_RAT	*-*-	Prolyl 4-hydroxylase subunit alpha-1	IPR003582 (ShKT domain), IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03128g04013.1	sp|Q9SKR2|SYT1_ARATH	***-	Synaptotagmin-1	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00773g14026.1	ref|XP_007008921.1|	***-	Differentiation-associated protein 1, putative isoform 2 [Theobroma cacao] gb|EOY17731.1| Differentiation-associated protein 1, putative isoform 2 [Theobroma cacao]		
Niben101Scf06654g02002.1	sp|B0C3M8|THF1_ACAM1	***-	Protein Thf1	IPR017499 (Photosystem II Psp29, biogenesis)	GO:0009523 (photosystem II), GO:0010027 (thylakoid membrane organization), GO:0015979 (photosynthesis)
Niben101Scf01172g05001.1			Unknown protein		
Niben101Scf00752g01005.1	gb|ABA98491.1|	--*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf05061g00010.1			Unknown protein		
Niben101Scf03624g01009.1	AT4G24400.1	****	CBL-interacting protein kinase 8 LENGTH=445	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05627g01014.1			Unknown protein		
Niben101Scf08721g01019.1	sp|Q9FNP8|RS193_ARATH	***-	40S ribosomal protein S19-3	IPR001266 (Ribosomal protein S19e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02381g06002.1	sp|Q3ZCI6|F204A_BOVIN	--*-	Protein FAM204A		
Niben101Scf00037g03004.1	emb|CDX67716.1|	***-	BnaA07g17560D [Brassica napus]		
Niben101Scf05311g00007.1	sp|Q8GXI9|PV42B_ARATH	***-	SNF1-related protein kinase regulatory subunit gamma-like PV42b	IPR000644 (CBS domain)	
Niben101Scf01063g01003.1	ref|NP_001173722.1|	***-	OsJ_13440 [Oryza sativa Japonica Group] dbj|BAH92450.1| [Oryza sativa Japonica Group]		
Niben101Ctg15519g00001.1	ref|XP_010111583.1|	*-**	30S rib S21 [Morus notabilis]	IPR001911 (Ribosomal protein S21)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Ctg11170g00003.1	sp|P42731|PABP2_ARATH	*-**	Polyadenylate-binding protein 2	IPR002004 (Polyadenylate-binding protein/Hyperplastic disc protein)	GO:0003723 (RNA binding)
Niben101Scf06132g00005.1	AT1G19100.1	***-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=663	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf02530g02011.1	sp|Q8LA53|MBD2_ARATH	****	Methyl-CpG-binding domain-containing protein 2	IPR011124 (Zinc finger, CW-type), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf13920g00001.1	sp|Q9ZQI8|NLTL2_ARATH	***-	Non-specific lipid-transfer protein-like protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf17153g00005.1	AT4G26640.2	****	WRKY family transcription factor family protein LENGTH=557	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00925g00005.1	sp|O14981|BTAF1_HUMAN	****	TATA-binding protein-associated factor 172	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR016024 (Armadillo-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005488 (binding), GO:0005524 (ATP binding)
Niben101Scf03307g04013.1	AT4G29310.1	***-	Protein of unknown function (DUF1005) LENGTH=424	IPR010410 (Protein of unknown function DUF1005)	
Niben101Scf03431g00012.1	ref|XP_010111818.1|	*-*-	4-coumarate--CoA ligase-like 7 [Morus notabilis] gb|EXC31783.1| 4-coumarate--CoA ligase-like 7 [Morus notabilis]		
Niben101Scf02945g01001.1	sp|Q8GZ17|COBL7_ARATH	***-	COBRA-like protein 7	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf03548g02003.1	sp|Q6P1R3|MSD2_HUMAN	--**	Myb/SANT-like DNA-binding domain-containing protein 2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf00291g02036.1	sp|Q9PKA0|SODM_CHLMU	*-**	Superoxide dismutase [Mn]	IPR001189 (Manganese/iron superoxide dismutase)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00015g00009.1	sp|Q4P9T3|CCR4_USTMA	*-*-	Glucose-repressible alcohol dehydrogenase transcriptional effector	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf00739g02007.1	sp|Q5ZLX5|ZRAB2_CHICK	*-**	Zinc finger Ran-binding domain-containing protein 2	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf14922g00046.1	AT1G01225.1	*-*-	NC domain-containing protein-related LENGTH=260	IPR007053 (LRAT-like domain)	
Niben101Scf10671g00002.1	sp|A2Z1W9|ACCO1_ORYSI	--*-	1-aminocyclopropane-1-carboxylate oxidase 1	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf08365g00002.1	sp|Q8GT20|BEBT_TOBAC	***-	Benzyl alcohol O-benzoyltransferase	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02994g02001.1	AT1G23000.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=358	IPR006121 (Heavy metal-associated domain, HMA), IPR007055 (BON domain)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf08772g00001.1	sp|Q9LF97|Y3295_ARATH	***-	CBS domain-containing protein CBSCBSPB3	IPR000270 (Phox/Bem1p), IPR000644 (CBS domain)	GO:0005515 (protein binding)
Niben101Scf06583g01007.1			Unknown protein		
Niben101Scf15166g03008.1	sp|Q8GXM8|MATE7_ARATH	--*-	MATE efflux family protein 7		
Niben101Scf10423g01006.1	emb|CDX82821.1|	*-*-	BnaC01g12710D [Brassica napus]		
Niben101Scf06252g01017.1			Unknown protein		
Niben101Scf02210g10009.1	sp|Q9SZY4|PTR27_ARATH	***-	Protein NRT1/ PTR FAMILY 6.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf05082g03006.1	sp|P12298|GLGL1_WHEAT	*-*-	Glucose-1-phosphate adenylyltransferase large subunit	IPR011004 (Trimeric LpxA-like)	
Niben101Scf09955g01007.1	sp|Q3B724|CALS5_ARATH	****	Callose synthase 5	IPR003440 (Glycosyl transferase, family 48)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf03971g01010.1			Unknown protein		
Niben101Scf07326g00003.1			Unknown protein		
Niben101Scf00376g02001.1	sp|Q9SDS7|VATC_ARATH	****	V-type proton ATPase subunit C	IPR004907 (ATPase, V1 complex, subunit C)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033180 (proton-transporting V-type ATPase, V1 domain)
Niben101Scf05315g00005.1	ref|XP_002529720.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF32686.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02104g00015.1			Unknown protein		
Niben101Scf08729g02026.1	gb|AES73754.2|	*-*-	zinc finger protein, putative [Medicago truncatula]		
Niben101Scf01832g01022.1	AT5G07990.1	*-*-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01001g04003.1	sp|Q9Y225|RNF24_HUMAN	--*-	RING finger protein 24	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02849g01004.1	sp|Q3B736|ATGA1_DANRE	***-	Autophagy-related protein 101	IPR012445 (Autophagy-related protein 1010)	
Niben101Scf01143g09016.1	emb|CDY42438.1|	***-	BnaC02g22700D [Brassica napus]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf05776g01040.1	sp|Q9SSM2|MDLL_ARATH	--*-	(R)-mandelonitrile lyase-like		
Niben101Scf01623g04024.1	sp|Q9WZV3|DNAJ_THEMA	--*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf13595g01022.1	gb|AET78871.1|	*-*-	At2g46550-like protein [Arabidopsis halleri]		
Niben101Scf01697g11008.1	sp|O49686|PYR1_ARATH	*-*-	Abscisic acid receptor PYR1	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf06348g00009.1	sp|Q0SMR8|RSMA_BORAP	*-*-	Ribosomal RNA small subunit methyltransferase A	IPR001737 (Ribosomal RNA adenine methyltransferase KsgA/Erm), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00087g03012.1	sp|A0R5C5|GALE_MYCS2	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005888 (dTDP-glucose 4,6-dehydratase), IPR029903 (RmlD-like substrate binding domain)	GO:0003824 (catalytic activity), GO:0008460 (dTDP-glucose 4,6-dehydratase activity), GO:0009225 (nucleotide-sugar metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf04653g02002.1	gb|KEH35012.1|	***-	sieve element occlusion protein [Medicago truncatula]	IPR027942 (Sieve element occlusion, N-terminal), IPR027944 (Sieve element occlusion, C-terminal)	
Niben101Scf01143g01009.1	ref|XP_007045750.1|	--*-	18S pre-rib gar2-related, putative isoform 2 [Theobroma cacao]		
Niben101Scf04040g05013.1	ref|XP_007011616.1|	***-	Centromere-associated protein E, putative isoform 1 [Theobroma cacao] gb|EOY29235.1| Centromere-associated protein E, putative isoform 1 [Theobroma cacao]		
Niben101Scf35473g00001.1	sp|P06511|PSAA_SPIOL	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00149g12019.1	AT5G46330.1	***-	Leucine-rich receptor-like protein kinase family protein LENGTH=1173	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf02232g02003.1	sp|Q68S17|RR2_PANGI	*-*-	30S ribosomal protein S2, chloroplastic	IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	
Niben101Scf03687g00003.1	sp|Q9FJB5|RP8L3_ARATH	*-*-	Disease resistance RPP8-like protein 3		
Niben101Scf00264g03014.1	AT2G33570.1	***-	Domain of unknown function (DUF23) LENGTH=496	IPR008166 (Domain of unknown function DUF23)	
Niben101Scf05140g02014.1	sp|A4PBL4|RAD54_ORYSJ	*-*-	DNA repair and recombination protein RAD54	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00220g04019.1	sp|P46607|HGL2_ARATH	--*-	Homeobox-leucine zipper protein GLABRA 2		
Niben101Scf07005g00008.1	AT3G52880.2	****	monodehydroascorbate reductase 1 LENGTH=466	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR016156 (FAD/NAD-linked reductase, dimerisation domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06153g03010.1			Unknown protein		
Niben101Scf03863g01007.1	gb|AFV46172.1|	--*-	spelt factor protein [Triticum aestivum]		
Niben101Scf01661g00004.1	sp|Q9SIL5|PP165_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf10323g00011.1	AT1G66480.1	***-	plastid movement impaired 2 LENGTH=225	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf12414g04009.1	sp|O42993|FKBP_SCHPO	*-*-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type), IPR024057 (Nucleoplasmin core domain)	GO:0006457 (protein folding)
Niben101Scf30081g00015.1	AT5G09890.2	****	Protein kinase family protein LENGTH=516	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg15767g00002.1	AT2G33700.1	****	Protein phosphatase 2C family protein LENGTH=380	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf00304g06001.1	sp|Q9ZVC9|FRS3_ARATH	***-	Protein FAR1-RELATED SEQUENCE 3	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type), IPR018289 (MULE transposase domain)	GO:0008270 (zinc ion binding)
Niben101Scf05060g05007.1	AT1G51700.1	*-*-	DOF zinc finger protein 1 LENGTH=194	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01847g00002.1	AT4G38790.1	****	ER lumen protein retaining receptor family protein LENGTH=273	IPR000133 (ER lumen protein retaining receptor)	GO:0006621 (protein retention in ER lumen), GO:0016021 (integral component of membrane), GO:0046923 (ER retention sequence binding)
Niben101Scf07974g03008.1	sp|P29829|GBB2_DROME	*-**	Guanine nucleotide-binding protein subunit beta-2	IPR006594 (LisH dimerisation motif), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01959g07016.1			Unknown protein		
Niben101Scf04067g05007.1	ref|XP_002513467.1|	*-*-	ubiquitin-protein ligase, putative [Ricinus communis] gb|EEF48870.1| ubiquitin-protein ligase, putative [Ricinus communis]		
Niben101Scf02626g07012.1	AT5G48970.1	***-	Mitochondrial substrate carrier family protein LENGTH=339	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf04930g00006.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf15286g00022.1	sp|Q94K41|SDR3B_ARATH	****	Short-chain dehydrogenase reductase 3b	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf15653g00004.1	AT1G34550.1	***-	Protein of unknown function (DUF616) LENGTH=735	IPR006852 (Protein of unknown function DUF616)	
Niben101Scf02468g11010.1	sp|Q7T339|CHMP5_DANRE	*-*-	Charged multivesicular body protein 5	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf01870g03004.1	ref|NP_064026.1|	***-	orf145 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] dbj|BAA99337.1| orf145 [Beta vulgaris subsp. vulgaris]		
Niben101Scf05649g05018.1	ref|NP_186958.1|	****	zinc-binding dehydrogenase family protein [Arabidopsis thaliana] putative NADP-dependent oxidoreductase [Arabidopsis thaliana] gb|AEE73899.1| zinc-binding dehydrogenase family protein [Arabidopsis thaliana]	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06826g06002.1	sp|Q9FGH4|E139_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 9	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05279g05006.1	sp|Q8LGG8|USPAL_ARATH	--**	Universal stress protein A-like protein	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf04558g02035.1	AT2G21530.1	***-	SMAD/FHA domain-containing protein LENGTH=209	IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf02425g01001.1			Unknown protein		
Niben101Scf01176g01033.1	sp|Q9W7R4|TEN3_DANRE	--*-	Teneurin-3	IPR000316 (Plant EC metallothionein-like protein, family 15)	GO:0008270 (zinc ion binding)
Niben101Scf03184g06001.1	sp|Q9C9A9|COL7_ARATH	*-*-	Zinc finger protein CONSTANS-LIKE 7	IPR010402 (CCT domain)	GO:0005515 (protein binding)
Niben101Scf01084g05013.1	gb|ACZ73650.1|	*-*-	glycine-rich protein precursor [Nicotiana tabacum]	IPR010800 (Glycine rich protein)	
Niben101Scf00116g05007.1			Unknown protein		
Niben101Scf00279g11013.1	sp|Q9LSM5|SGT1_ARATH	*-*-	Protein SGT1 homolog	IPR010770 (SGT1)	
Niben101Scf05017g04007.1	AT2G20590.1	*-*-	Reticulon family protein LENGTH=431	IPR003388 (Reticulon)	
Niben101Scf09885g00008.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR000118 (Granulin), IPR013128 (Peptidase C1A), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf05629g00005.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf00082g07005.1	emb|CDY44792.1|	*-*-	BnaC02g00950D [Brassica napus]		
Niben101Scf05764g00013.1	sp|A2ZDX9|DHR21_ORYSI	--**	Water stress-inducible protein Rab21	IPR000167 (Dehydrin)	GO:0006950 (response to stress), GO:0009415 (response to water)
Niben101Scf01695g03007.1	gb|EMT03450.1|	***-	Universal stress protein A-like protein [Aegilops tauschii]	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	
Niben101Scf03937g03010.1	ref|NP_001063350.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf00478g06001.1	AT4G31860.1	****	Protein phosphatase 2C family protein LENGTH=357	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf02081g02001.1	sp|H3K2Y6|MED12_ARATH	****	Mediator of RNA polymerase II transcription subunit 12	IPR019035 (Mediator complex, subunit Med12)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf06205g02014.1	sp|B8D0S5|SAT_HALOH	****	Sulfate adenylyltransferase	IPR002650 (Sulphate adenylyltransferase), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR015947 (PUA-like domain)	GO:0000103 (sulfate assimilation), GO:0004781 (sulfate adenylyltransferase (ATP) activity)
Niben101Scf05881g01007.1	gb|AAF76312.1|AF220603_4	--*-	Prf [Solanum lycopersicum]		
Niben101Scf12846g00010.1	gb|AET03373.2|	***-	isochorismatase hydrolase family protein [Medicago truncatula]	IPR000868 (Isochorismatase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01966g01003.1			Unknown protein		
Niben101Scf06064g00011.1	sp|B9SXY8|CSPLE_RICCO	*-*-	CASP-like protein 4D1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf23003g00001.1	sp|Q0WLC7|Y5053_ARATH	***-	CBS domain-containing protein CBSCBSPB4	IPR000270 (Phox/Bem1p), IPR000644 (CBS domain)	GO:0005515 (protein binding)
Niben101Scf14799g01012.1	AT3G57240.1	***-	beta-1,3-glucanase 3 LENGTH=341	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03736g00001.1	sp|Q84N34|HHP2_ARATH	***-	Heptahelical transmembrane protein 2	IPR004254 (AdipoR/Haemolysin-III-related)	GO:0016021 (integral component of membrane)
Niben101Scf04871g22001.1	sp|P29060|CHIA_TOBAC	***-	Acidic endochitinase	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04414g01004.1	sp|Q25378|KPC1_LYTPI	*-**	Protein kinase C	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02063g03002.1	AT1G06620.1	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=365	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf04921g01030.1	gb|ABF97907.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf01146g06012.1	sp|P29677|MPPA_SOLTU	***-	Mitochondrial-processing peptidase subunit alpha	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0046872 (metal ion binding)
Niben101Scf14378g04001.1	emb|CDX92616.1|	***-	BnaC07g38740D [Brassica napus]	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf08446g01006.1	gb|AAL50981.1|AF453322_1	*-*-	zinc finger protein LSD1 [Brassica oleracea]	IPR005735 (Zinc finger, LSD1-type)	
Niben101Scf39295g00002.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf07491g00004.1	gb|KEH44398.1|	*-*-	MFS transporter [Medicago truncatula]		
Niben101Scf00863g10001.1	sp|Q9C5H9|GACP2_ARATH	***-	Gamma-tubulin complex component 2	IPR007259 (Gamma-tubulin complex component protein)	GO:0000226 (microtubule cytoskeleton organization), GO:0000922 (spindle pole), GO:0005815 (microtubule organizing center)
Niben101Scf01959g06014.1	ref|XP_007021390.1|	--*-	Silencing defective 5, putative isoform 1 [Theobroma cacao] gb|EOY12915.1| Silencing defective 5, putative isoform 1 [Theobroma cacao]		
Niben101Scf00862g02048.1	AT5G06150.1	***-	Cyclin family protein LENGTH=445	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf00960g15004.1	sp|Q9FEP7|SUT13_ARATH	****	Sulfate transporter 1.3	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0005886 (plasma membrane), GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf17482g00019.1	sp|Q8L7W2|NUDT8_ARATH	*-**	Nudix hydrolase 8	IPR003293 (Nudix hydrolase 6-like)	GO:0016787 (hydrolase activity)
Niben101Scf01626g04004.1	AT5G56040.2	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1090	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf06996g01006.1			Unknown protein		
Niben101Scf20935g00014.1	AT2G43400.1	****	electron-transfer flavoprotein:ubiquinone oxidoreductase LENGTH=633	IPR007859 (Electron transfer flavoprotein-ubiquinone oxidoreductase)	GO:0004174 (electron-transferring-flavoprotein dehydrogenase activity), GO:0055114 (oxidation-reduction process)
Niben101Ctg15311g00001.1	AT5G43050.1	***-	Protein of unknown function (DUF565) LENGTH=158	IPR007572 (Uncharacterised protein family Ycf20)	
Niben101Scf05543g01005.1			Unknown protein		
Niben101Scf03191g02011.1	sp|Q02171|MYSP_ONCVO	--*-	Paramyosin	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf13448g00007.1	sp|O50064|FIMB2_ARATH	***-	Fimbrin-2	IPR001715 (Calponin homology domain)	GO:0005515 (protein binding)
Niben101Scf03250g00001.1			Unknown protein		
Niben101Scf05710g00007.1	AT2G17840.1	***-	Senescence/dehydration-associated protein-related LENGTH=452	IPR009686 (Senescence/spartin-associated)	
Niben101Scf03141g03004.1			Unknown protein		
Niben101Scf04742g02006.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01842g02006.1	emb|CDX73606.1|	--*-	BnaC08g23970D [Brassica napus]		
Niben101Scf11110g00025.1	sp|Q7XUK4|GUN12_ORYSJ	***-	Endoglucanase 12	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00193g03004.1	AT1G51700.1	*-*-	DOF zinc finger protein 1 LENGTH=194	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02041g03005.1	AT2G17200.1	***-	ubiquitin family protein LENGTH=551	IPR009060 (UBA-like), IPR015496 (Ubiquilin), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf03576g01001.1	sp|Q55721|FBT_SYNY3	***-	Folate-biopterin transporter	IPR004324 (Folate-biopterin transporter), IPR020846 (Major facilitator superfamily domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf06280g01016.1	ref|XP_002517421.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF44963.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf00398g06018.1	sp|Q9SFX2|PUB43_ARATH	*-*-	U-box domain-containing protein 43		
Niben101Scf03634g13006.1	sp|B6VJS4|ROMT_VITVI	*-**	Trans-resveratrol di-O-methyltransferase	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity)
Niben101Scf03389g00044.1	AT4G16050.1	*-*-	Aminotransferase-like, plant mobile domain family protein LENGTH=666	IPR006904 (Protein of unknown function DUF716 (TMEM45)), IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf20768g00025.1	sp|P42798|R15A1_ARATH	--*-	40S ribosomal protein S15a-1		
Niben101Scf05993g01013.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05105g00001.1	AT4G21750.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=762	IPR002913 (START domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008289 (lipid binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04446g00028.1	ref|XP_007026070.1|	*-*-	Homer protein isoform 2 [Theobroma cacao] gb|EOY28692.1| Homer protein isoform 2 [Theobroma cacao]		
Niben101Scf05506g00006.1	AT5G47890.1	***-	NADH-ubiquinone oxidoreductase B8 subunit, putative LENGTH=97	IPR012336 (Thioredoxin-like fold), IPR016464 (NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2)	
Niben101Scf00488g06010.1	sp|Q94758|DYL1_SCHMA	*-*-	Dynein light chain	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Scf01954g01021.1	ref|XP_002513040.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF49543.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf10058g00019.1	sp|Q84KG5|CCD_CROSA	***-	Carotenoid 9,10(9',10')-cleavage dioxygenase	IPR004294 (Carotenoid oxygenase)	
Niben101Scf05378g01017.1	sp|O82491|SPT16_ARATH	*-*-	FACT complex subunit SPT16	IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	
Niben101Scf10048g02013.1	sp|Q85A24|CYB6_ANTFO	****	Cytochrome b6	IPR016174 (Di-haem cytochrome, transmembrane), IPR023530 (Cytochrome b6, PetB), IPR027387 (Cytochrome b/b6-like domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0016491 (oxidoreductase activity), GO:0020037 (heme binding), GO:0022900 (electron transport chain), GO:0022904 (respiratory electron transport chain), GO:0045158 (electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity)
Niben101Scf04562g00005.1	AT5G32440.3	***-	Ubiquitin system component Cue protein LENGTH=265		
Niben101Scf08625g00005.1	emb|CDY25179.1|	*-*-	BnaC06g04040D [Brassica napus]		
Niben101Scf02638g03015.1	gb|KEH20669.1|	*-*-	alpha/beta-hydrolase superfamily protein [Medicago truncatula]		
Niben101Scf09260g03026.1	sp|Q12310|PRR2_YEAST	--*-	Serine/threonine-protein kinase PRR2		
Niben101Scf05713g01012.1	sp|O51453|RS13_BORBU	-**-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH)	
Niben101Scf03894g02004.1	AT4G24130.1	***-	Protein of unknown function, DUF538 LENGTH=157	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf00140g02010.1	sp|B7GW04|RL23_ACIB3	--*-	50S ribosomal protein L23	IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06832g01009.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf00837g07002.1	ref|NP_001051960.1|	***-	[Oryza sativa Japonica Group] dbj|BAF13874.1| [Oryza sativa Japonica Group]		
Niben101Scf00294g02015.1	sp|Q8RV04|TI141_ARATH	***-	Mitochondrial import inner membrane translocase subunit TIM14-1	IPR001623 (DnaJ domain)	
Niben101Scf06976g06012.1	ref|XP_002309346.1|	*-*-	methyladenine glyc [Populus trichocarpa]		
Niben101Scf17858g00001.1	sp|Q2QNS6|CSLD4_ORYSJ	*-**	Cellulose synthase-like protein D4	IPR005150 (Cellulose synthase)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Ctg03638g00002.1	sp|B6JD11|RPPH_OLICO	--*-	RNA pyrophosphohydrolase	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf08194g02004.1	sp|Q9SWG3|FAR1_ARATH	--*-	Protein FAR-RED IMPAIRED RESPONSE 1	IPR018289 (MULE transposase domain)	
Niben101Scf08368g05014.1	sp|Q2T9X7|UB2E3_BOVIN	*-*-	Ubiquitin-conjugating enzyme E2 E3	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf06599g00001.1	sp|Q9FZ70|FDL1_ARATH	--*-	F-box/FBD/LRR-repeat protein		
Niben101Scf12431g00010.1	sp|Q9SU13|FLA2_ARATH	***-	Fasciclin-like arabinogalactan protein 2	IPR000782 (FAS1 domain)	
Niben101Scf00764g03002.1			Unknown protein		
Niben101Scf01337g06007.1	AT3G55820.1	*-*-	Fasciclin-like arabinogalactan family protein LENGTH=204		
Niben101Scf06661g03005.1	gb|AAG37451.1|	***-	seed maturation protein LEA 4 [Glycine tomentella]	IPR005513 (Late embryogenesis abundant protein, LEA-25/LEA-D113)	GO:0009790 (embryo development)
Niben101Scf08326g00018.1	sp|Q6DR20|FB110_ARATH	***-	F-box protein	IPR005174 (Protein of unknown function DUF295)	
Niben101Scf05329g01007.1	AT3G56200.1	***-	Transmembrane amino acid transporter family protein LENGTH=435	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf04174g01013.1	sp|Q5A4W8|BDF1_CANAL	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf26131g00007.1	sp|O04887|PME2_CITSI	****	Pectinesterase 2	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf22781g00001.1	AT1G13220.2	***-	nuclear matrix constituent protein-related LENGTH=1128		
Niben101Scf06831g00001.1	sp|Q0JNK6|CCB13_ORYSJ	****	Cyclin-B1-3	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf00290g01031.1	AT5G12460.1	***-	Protein of unknown function (DUF604) LENGTH=441	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf03964g04027.1	sp|B7LQF8|PAT_ESCF3	*-*-	Putrescine aminotransferase	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03839g06005.1	AT5G28080.2	*-**	Protein kinase superfamily protein LENGTH=492	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00276g04002.1	sp|Q3ANN7|ARLY_SYNSC	****	Argininosuccinate lyase	IPR000362 (Fumarate lyase family), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0004056 (argininosuccinate lyase activity), GO:0042450 (arginine biosynthetic process via ornithine)
Niben101Scf05468g10024.1	sp|Q9Y305|ACOT9_HUMAN	--*-	Acyl-coenzyme A thioesterase 9, mitochondrial	IPR029069 (HotDog domain)	
Niben101Scf12994g03001.1	ref|XP_002511983.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF50652.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07326g00004.1	sp|Q9SLH0|EIL1_ARATH	*-*-	ETHYLENE INSENSITIVE 3-like 1 protein		
Niben101Scf08637g01006.1	AT1G23750.1	***-	Nucleic acid-binding, OB-fold-like protein LENGTH=137	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf05283g00019.1	AT1G30470.1	***-	SIT4 phosphatase-associated family protein LENGTH=811	IPR007587 (SIT4 phosphatase-associated protein family), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf06219g00005.1	gb|KEH25124.1|	***-	polygalacturonase QRT3-like protein [Medicago truncatula]	IPR011050 (Pectin lyase fold/virulence factor)	
Niben101Scf00318g02002.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00271g01015.1	AT5G45120.1	***-	Eukaryotic aspartyl protease family protein LENGTH=491	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00705g02005.1	ref|XP_007023235.1|	*-*-	TMV resistance protein N [Theobroma cacao] gb|EOY25857.1| TMV resistance protein N [Theobroma cacao]		
Niben101Scf03371g02004.1	sp|B3QXY8|TIG_CHLT3	--*-	Trigger factor		
Niben101Scf04001g00003.1	gb|ADV15953.1|	*-*-	maturase, partial (mitochondrion) [Syringa vulgaris]		
Niben101Scf14814g00012.1	emb|CDY16302.1|	*-*-	BnaC01g23370D [Brassica napus]		
Niben101Scf09708g01012.1	sp|O54862|MBTP2_CRIGR	****	Membrane-bound transcription factor site-2 protease	IPR001193 (Membrane-bound transcription factor site-2 protease)	GO:0004222 (metalloendopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf01976g00017.1	sp|Q9LID0|LDL2_ARATH	***-	Lysine-specific histone demethylase 1 homolog 2	IPR002937 (Amine oxidase), IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR016040 (NAD(P)-binding domain)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01066g05008.1	ref|WP_010251933.1|	--*-	NADH dehydrogenase [Acetivibrio cellulolyticus]	IPR012336 (Thioredoxin-like fold)	
Niben101Scf04939g01006.1	gb|KEH18933.1|	***-	BON1-associated-like protein [Medicago truncatula]	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf07790g03024.1	sp|Q8IZT6|ASPM_HUMAN	*-**	Abnormal spindle-like microcephaly-associated protein	IPR000048 (IQ motif, EF-hand binding site), IPR016024 (Armadillo-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029955 (Abnormal spindle-like microcephaly-associated protein)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0007051 (spindle organization)
Niben101Scf03404g01013.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00714g08018.1	sp|Q07442|BDF2_YEAST	*-*-	Bromodomain-containing factor 2	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf13773g00025.1	AT1G01920.1	*-*-	SET domain-containing protein LENGTH=572		
Niben101Scf04934g02002.1	gb|ABF97907.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf04109g10001.1	ref|WP_020768874.1|	*-*-	ab-hydrolase associated lipase region [Leptospira sp. B5-022] gb|EMK00921.1| ab-hydrolase associated lipase region [Leptospira sp. B5-022]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05071g00012.1	sp|Q3SZF8|SMD2_BOVIN	****	Small nuclear ribonucleoprotein Sm D2	IPR010920 (Like-Sm (LSM) domain), IPR027248 (Small nuclear ribonucleoprotein Sm D2)	GO:0008380 (RNA splicing), GO:0030532 (small nuclear ribonucleoprotein complex)
Niben101Scf07169g00005.1	sp|Q9ZQR4|Y2452_ARATH	***-	DUF21 domain-containing protein	IPR000644 (CBS domain), IPR002550 (Domain of unknown function DUF21)	
Niben101Scf05680g00018.1	sp|Q8LLE5|FPP_SOLLC	*-*-	Filament-like plant protein	IPR008587 (Filament-like plant protein)	
Niben101Scf02069g01021.1	AT1G14570.2	*-*-	UBX domain-containing protein LENGTH=468	IPR006577 (UAS), IPR009060 (UBA-like), IPR012336 (Thioredoxin-like fold), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf00273g00014.1	sp|Q9FJ13|COBL9_ARATH	***-	COBRA-like protein 9	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf02422g02015.1	AT5G66890.1	***-	Leucine-rich repeat (LRR) family protein LENGTH=415	IPR002182 (NB-ARC), IPR008808 (Powdery mildew resistance protein, RPW8 domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01642g03015.1	AT5G18650.1	****	CHY-type/CTCHY-type/RING-type Zinc finger protein LENGTH=267	IPR004039 (Rubredoxin-type fold), IPR008913 (Zinc finger, CHY-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017921 (Zinc finger, CTCHY-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09087g01022.1	AT1G61980.1	*-**	Mitochondrial transcription termination factor family protein LENGTH=418	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04049g00020.1	gb|AIU50013.1|	-**-	tunicamycin induced 1, partial [Medicago truncatula]		
Niben101Scf09854g00001.1	AT3G04580.1	****	Signal transduction histidine kinase, hybrid-type, ethylene sensor LENGTH=766	IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily), IPR014525 (Signal transduction histidine kinase, hybrid-type, ethylene sensor), IPR029016 (GAF domain-like)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004673 (protein histidine kinase activity), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0005789 (endoplasmic reticulum membrane), GO:0007165 (signal transduction), GO:0009873 (ethylene-activated signaling pathway)
Niben101Scf05932g04005.1			Unknown protein		
Niben101Scf08711g01028.1	sp|Q9FGZ9|UBL5_ARATH	*-*-	Ubiquitin-like protein 5	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf04820g02009.1	sp|O84068|TLC1_CHLTR	****	ADP,ATP carrier protein 1	IPR004667 (ADP/ATP carrier protein), IPR020846 (Major facilitator superfamily domain)	GO:0005471 (ATP:ADP antiporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf00894g00005.1			Unknown protein		
Niben101Scf03467g00010.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf00773g14025.1	sp|Q9SRL8|LBD21_ARATH	*-*-	LOB domain-containing protein 21	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf04764g10019.1	sp|E1BLZ4|ZFY26_BOVIN	*-*-	Zinc finger FYVE domain-containing protein 26		
Niben101Scf04820g03004.1	gb|KEH28741.1|	*-*-	DUF2921 family protein [Medicago truncatula]	IPR021319 (Protein of unknown function DUF2921)	
Niben101Scf05761g01038.1	AT3G15030.1	*-*-	TCP family transcription factor 4 LENGTH=420	IPR005333 (Transcription factor, TCP)	
Niben101Scf01339g06011.1	emb|CDY19080.1|	***-	BnaA04g18200D [Brassica napus]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf00234g02045.1	gb|ACI02101.1|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Isoetes engelmannii]		
Niben101Scf20506g01008.1	AT2G35360.1	***-	ubiquitin family protein LENGTH=225	IPR019387 (Uncharacterised domain SAYSvFN), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf01696g05016.1	AT2G34210.1	*-**	Transcription elongation factor Spt5 LENGTH=989	IPR005100 (Transcription elongation factor Spt5, NGN domain), IPR006645 (NusG, N-terminal), IPR008991 (Translation protein SH3-like domain)	GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01623g10011.1	AT2G47480.1	***-	Protein of unknown function (DUF3511) LENGTH=110	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf02264g06030.1	AT4G21380.1	*-**	receptor kinase 3 LENGTH=850	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03867g00006.1	ref|XP_002532616.1|	--*-	serine-threonine protein kinase, plant-type, putative [Ricinus communis] gb|EEF29782.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]		
Niben101Scf04557g03013.1	AT2G28110.1	***-	Exostosin family protein LENGTH=448	IPR004263 (Exostosin-like)	
Niben101Scf05955g00002.1	sp|Q9SFX2|PUB43_ARATH	***-	U-box domain-containing protein 43	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00861g07002.1	sp|Q56Y85|MAP22_ARATH	****	Methionine aminopeptidase 2B	IPR000994 (Peptidase M24, structural domain), IPR001714 (Peptidase M24, methionine aminopeptidase), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0004177 (aminopeptidase activity), GO:0006508 (proteolysis), GO:0008235 (metalloexopeptidase activity)
Niben101Scf04939g02022.1	sp|Q28KF4|RS21_JANSC	-**-	30S ribosomal protein S21	IPR001911 (Ribosomal protein S21)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04122g06011.1	sp|Q570C0|TIR1_ARATH	***-	Protein TRANSPORT INHIBITOR RESPONSE 1	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf00077g06002.1	AT5G07050.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=402	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf07231g06005.1	gb|KEH33317.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf09906g02028.1	AT2G38610.1	****	RNA-binding KH domain-containing protein LENGTH=286	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf01750g06005.1			Unknown protein		
Niben101Scf04410g09010.1	sp|Q4V8X0|TPRA1_DANRE	-**-	Transmembrane protein adipocyte-associated 1 homolog	IPR018781 (Transmembrane protein adipocyte-associated 1)	
Niben101Scf01037g02018.1	sp|Q9LFQ3|SNL2_ARATH	*-*-	Paired amphipathic helix protein Sin3-like 2	IPR003822 (Paired amphipathic helix), IPR013194 (Histone deacetylase interacting)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10576g01019.1			Unknown protein		
Niben101Scf11513g00004.1	AT2G26150.1	****	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf10248g01019.1	sp|Q5NAI4|PLA5_ORYSJ	*-*-	Phospholipase A1-II 5	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf00870g16016.1	AT1G72710.1	*-*-	casein kinase 1-like protein 2 LENGTH=465	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00501g02005.1	sp|Q9Y2G4|ANKR6_HUMAN	*-*-	Ankyrin repeat domain-containing protein 6	IPR003903 (Ubiquitin interacting motif), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf23001g00002.1	sp|A5VSL6|TSAD_BRUO2	***-	tRNA N6-adenosine threonylcarbamoyltransferase	IPR000905 (Gcp-like domain), IPR017861 (Kae1/YgjD family)	
Niben101Scf01153g00016.1	sp|Q9FC99|PFKA3_STRCO	****	ATP-dependent 6-phosphofructokinase 3	IPR000023 (Phosphofructokinase domain), IPR012004 (Pyrophosphate-dependent phosphofructokinase TP0108), IPR022953 (Phosphofructokinase)	GO:0003872 (6-phosphofructokinase activity), GO:0005524 (ATP binding), GO:0006002 (fructose 6-phosphate metabolic process), GO:0006096 (glycolytic process)
Niben101Scf04096g03003.1	sp|Q9M2Z5|FBL53_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf06207g01007.1	gb|AIX92333.1|	*-*-	Ycf1, partial (chloroplast) [Paeonia californica]		
Niben101Scf01027g01017.1	sp|Q9FF55|PDI14_ARATH	****	Protein disulfide isomerase-like 1-4	IPR005792 (Protein disulphide isomerase), IPR012336 (Thioredoxin-like fold)	GO:0005783 (endoplasmic reticulum), GO:0016853 (isomerase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03948g02008.1	sp|Q2HJJ0|KLC4_BOVIN	--*-	Kinesin light chain 4	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04197g01023.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07748g03004.1	AT2G30690.1	*-*-	Protein of unknown function, DUF593 LENGTH=760	IPR007656 (Zein-binding domain)	
Niben101Scf06187g01031.1	sp|O35696|SIA8B_MOUSE	*-**	Alpha-2,8-sialyltransferase 8B	IPR001675 (Glycosyl transferase, family 29)	GO:0006486 (protein glycosylation), GO:0008373 (sialyltransferase activity)
Niben101Scf04650g03004.1	ref|XP_003620991.1|	--*-	Histone H4 [Medicago truncatula]	IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf16812g01017.1	gb|ABA99444.2|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf09458g00001.1	AT1G63980.1	***-	D111/G-patch domain-containing protein LENGTH=391		
Niben101Scf11306g00009.1	sp|P93028|UBE11_ARATH	****	Ubiquitin-activating enzyme E1 1	IPR000011 (Ubiquitin/SUMO-activating enzyme E1), IPR018965 (Ubiquitin-activating enzyme e1, C-terminal), IPR023280 (Ubiquitin-like 1 activating enzyme, catalytic cysteine domain)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0006464 (cellular protein modification process), GO:0008641 (small protein activating enzyme activity)
Niben101Scf09132g00012.1	AT5G66600.4	***-	Protein of unknown function, DUF547 LENGTH=629	IPR006869 (Domain of unknown function DUF547)	
Niben101Scf09628g02007.1	ref|XP_002533735.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF28647.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf15310g00001.1	sp|Q39786|PGLR_GOSHI	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01668g00002.1	emb|CDY58982.1|	***-	BnaA04g28680D [Brassica napus]	IPR007789 (Protein of unknown function DUF688)	
Niben101Scf01673g03001.1	emb|CDY45072.1|	***-	BnaA02g05040D [Brassica napus]	IPR007650 (Zf-FLZ domain)	
Niben101Scf02452g04011.1	AT1G77290.1	*-*-	Glutathione S-transferase family protein LENGTH=266	IPR010987 (Glutathione S-transferase, C-terminal-like)	
Niben101Scf04473g08010.1	AT1G56440.2	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=494	IPR011990 (Tetratricopeptide-like helical domain), IPR025986 (RNA-polymerase II-associated protein 3-like, C-terminal domain)	GO:0005515 (protein binding)
Niben101Scf02769g01001.1	AT4G01440.1	*-**	nodulin MtN21 /EamA-like transporter family protein LENGTH=365	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf03577g00001.1	sp|P46629|RAB25_RABIT	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02786g03006.1	AT3G18570.1	***-	Oleosin family protein LENGTH=166	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf00231g07017.1			Unknown protein		
Niben101Scf12628g03003.1	AT1G15220.1	***-	cytochrome c biogenesis protein family LENGTH=159	IPR005616 (Cytochrome C biogenesis protein CcmH)	
Niben101Scf07391g03013.1	sp|Q39649|2SS_CUCMA	--*-	2S albumin	IPR000617 (Napin/ Bra allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0045735 (nutrient reservoir activity)
Niben101Ctg08121g00003.1	sp|Q9FVV1|GDL28_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf03266g05019.1			Unknown protein		
Niben101Scf02838g07001.1	sp|Q8L868|E1311_ARATH	***-	Glucan endo-1,3-beta-glucosidase 11	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00837g03003.1	sp|Q84NC5|MAD25_ORYSJ	***-	MADS-box transcription factor 25	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf02105g02006.1	AT4G15050.1	***-	Protein of Unknown Function (DUF239) LENGTH=396	IPR004314 (Domain of unknown function DUF239)	
Niben101Scf01394g00003.1	ref|NP_001154388.1|	*-*-	inactive poly [ADP-ribose] polymerase RCD1 [Arabidopsis thaliana] gb|AEE31454.1| inactive poly [ADP-ribose] polymerase RCD1 [Arabidopsis thaliana]		
Niben101Scf03518g00006.1	sp|P51106|DFRA_HORVU	*-*-	Dihydroflavonol-4-reductase	IPR016040 (NAD(P)-binding domain)	
Niben101Scf05346g05001.1	sp|P15252|REF_HEVBR	***-	Rubber elongation factor protein	IPR008802 (Rubber elongation factor)	
Niben101Scf09273g00004.1	AT4G27010.2	*-*-	INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages;		
Niben101Scf05173g02010.1	AT1G02120.1	*-*-	GRAM domain family protein LENGTH=598		
Niben101Scf00854g00034.1	sp|A1B495|NUOD_PARDP	*-*-	NADH-quinone oxidoreductase subunit D		
Niben101Scf03076g00002.1	AT3G54070.1	***-	Ankyrin repeat family protein LENGTH=574	IPR020683 (Ankyrin repeat-containing domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	GO:0005515 (protein binding)
Niben101Scf06789g04019.1	ref|XP_007034677.1|	***-	OB-fold-like isoform 1 [Theobroma cacao] gb|EOY05603.1| OB-fold-like isoform 1 [Theobroma cacao]	IPR003750 (Putative RNA methyltransferase), IPR012340 (Nucleic acid-binding, OB-fold), IPR029028 (Alpha/beta knot methyltransferases)	
Niben101Scf02971g00005.1	sp|Q9LPI5|CID11_ARATH	****	Polyadenylate-binding protein-interacting protein 11	IPR009818 (Ataxin-2, C-terminal), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Ctg15702g00001.1	sp|Q9LIB5|GAT17_ARATH	*-**	GATA transcription factor 17	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf25021g01002.1	sp|Q9SRE6|CML38_ARATH	--**	Calcium-binding protein CML38	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01993g06013.1	gb|AES63134.2|	***-	lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf13926g01014.1	sp|A6MFK9|CRVP_DEMVE	***-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf01872g01006.1	sp|A8MQA3|PP330_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04220g04001.1	sp|Q43735|PER27_ARATH	****	Peroxidase 27	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04216g03017.1	AT1G34320.1	***-	Protein of unknown function (DUF668) LENGTH=657	IPR007700 (Protein of unknown function DUF668), IPR021864 (Protein of unknown function DUF3475)	
Niben101Scf06757g00005.1			Unknown protein		
Niben101Scf05811g03002.1	sp|P78968|PPZ_SCHPO	*-*-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf05939g01011.1	sp|Q6Q3H3|TPSGD_VITVI	*-**	(-)-germacrene D synthase	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf00127g01008.1	sp|Q55E69|SYS1_DICDI	***-	Protein SYS1 homolog	IPR019185 (Integral membrane protein SYS1-related)	
Niben101Scf01076g02012.1	sp|Q84JH9|TBL25_ARATH	***-	Protein trichome birefringence-like 25	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf04731g01001.1			Unknown protein		
Niben101Scf15476g01014.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]	IPR002182 (NB-ARC), IPR021929 (Late blight resistance protein R1)	GO:0043531 (ADP binding)
Niben101Scf00854g08048.1	ref|YP_006291856.1|	*-*-	orf51a gene product (mitochondrion) [Daucus carota subsp. sativus] ref|YP_006291870.1| orf51b gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81191.1| orf51a (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81196.1| orf51b (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf11108g03003.1	AT5G12040.1	***-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein LENGTH=369	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf01155g04007.1	sp|Q40161|GP1_SOLLC	***-	Polygalacturonase-1 non-catalytic subunit beta	IPR004873 (BURP domain)	
Niben101Scf04015g02030.1	AT5G43100.1	***-	Eukaryotic aspartyl protease family protein LENGTH=631	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf10148g00012.1	sp|P51267|ODPA_PORPU	****	Pyruvate dehydrogenase E1 component subunit alpha	IPR017597 (Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y), IPR029061 (Thiamin diphosphate-binding fold)	GO:0004739 (pyruvate dehydrogenase (acetyl-transferring) activity), GO:0006096 (glycolytic process), GO:0008152 (metabolic process), GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor), GO:0043231 (intracellular membrane-bounded organelle), GO:0055114 (oxidation-reduction process)
Niben101Scf03253g00017.1	sp|Q9FGZ9|UBL5_ARATH	***-	Ubiquitin-like protein 5	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf02547g02012.1	sp|Q84WU6|ARFQ_ARATH	*-*-	Auxin response factor 17	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf08029g01007.1	AT3G02800.1	****	Tyrosine phosphatase family protein LENGTH=203	IPR004861 (Protein-tyrosine phosphatase, SIW14-like), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf07516g00015.1	ref|NP_001047545.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf03628g14016.1	AT3G58610.1	****	ketol-acid reductoisomerase LENGTH=591	IPR013023 (Acetohydroxy acid isomeroreductase), IPR016040 (NAD(P)-binding domain)	GO:0004455 (ketol-acid reductoisomerase activity), GO:0008652 (cellular amino acid biosynthetic process), GO:0009082 (branched-chain amino acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00103g00017.1	sp|Q9C554|EXPA1_ARATH	***-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf06426g00001.1	ref|XP_002530829.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF31542.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06087g02012.1	sp|Q11HS1|RL15_CHESB	****	50S ribosomal protein L15	IPR005749 (Ribosomal protein L15, bacterial-type), IPR021131 (Ribosomal protein L18e/L15P)	GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Ctg16285g00004.1	sp|Q39263|ZFP4_ARATH	***-	Zinc finger protein 4	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf02632g03007.1	sp|P18417|STSY_CATRO	*-*-	Strictosidine synthase	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf00597g08021.1	emb|CDY02954.1|	-**-	BnaC04g25320D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf05534g01008.1	AT1G66220.1	*-*-	Subtilase family protein LENGTH=753	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf00831g02021.1	gb|KEH23814.1|	***-	auxin canalization protein [Medicago truncatula]	IPR008546 (Domain of unknown function DUF828), IPR013666 (Pleckstrin-like, plant)	
Niben101Scf01746g03013.1			Unknown protein		
Niben101Scf07532g02008.1	AT1G12310.1	*-**	Calcium-binding EF-hand family protein LENGTH=148	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf08576g00001.1	sp|Q03585|RPOA1_THEAC	*-**	DNA-directed RNA polymerase subunit A'	IPR006592 (RNA polymerase, N-terminal), IPR007066 (RNA polymerase Rpb1, domain 3), IPR007080 (RNA polymerase Rpb1, domain 1), IPR007081 (RNA polymerase Rpb1, domain 5), IPR007083 (RNA polymerase Rpb1, domain 4), IPR015801 (Copper amine oxidase, N2/N3-terminal), IPR021602 (Protein of unknown function DUF3223)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005507 (copper ion binding), GO:0006351 (transcription, DNA-templated), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding)
Niben101Scf19295g00014.1	sp|Q3C1G9|RPOC2_NICSY	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf02979g01007.1	sp|Q2HBE7|DED1_CHAGB	*-**	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR001878 (Zinc finger, CCHC-type), IPR012562 (GUCT), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf03924g03003.1	ref|XP_002524654.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF37673.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11453g02016.1			Unknown protein		
Niben101Scf04114g02022.1			Unknown protein		
Niben101Scf03520g01007.1	AT4G08540.1	***-	DNA-directed RNA polymerase II protein LENGTH=473	IPR018791 (UV radiation resistance protein/autophagy-related protein 14)	GO:0010508 (positive regulation of autophagy)
Niben101Scf01395g03010.1	AT1G30760.1	*-*-	FAD-binding Berberine family protein LENGTH=534		
Niben101Scf00961g01018.1	AT2G38840.1	****	Guanylate-binding family protein LENGTH=602	IPR003191 (Guanylate-binding protein, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf09801g00001.1	emb|CDY26379.1|	***-	BnaA02g23910D [Brassica napus]		
Niben101Scf01398g00006.1	AT4G29510.1	*-**	arginine methyltransferase 11 LENGTH=390	IPR025799 (Protein arginine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity)
Niben101Scf12383g01002.1	sp|P49756|RBM25_HUMAN	*-**	RNA-binding protein 25	IPR002483 (PWI domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0006397 (mRNA processing)
Niben101Scf10416g00005.1	dbj|BAD81603.1|	*-*-	helicase-like protein [Oryza sativa Japonica Group]		
Niben101Scf04044g13015.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf01959g07015.1	ref|NP_064104.1|	*-*-	orf110b gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] ref|YP_004222346.1| hypothetical protein BevumaM_p112 [Beta vulgaris subsp. maritima] ref|YP_004842151.1| hypothetical protein BemaM_p107 [Beta macrocarpa] dbj|BAA99498.1| orf110b [Beta vulgaris subsp. vulgaris] emb|CBJ14076.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBJ17566.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBJ20714.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBX24956.1| hypothetical protein [Beta macrocarpa] emb|CBL51962.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp. maritima]		
Niben101Scf01529g03007.1	sp|Q570C0|TIR1_ARATH	***-	Protein TRANSPORT INHIBITOR RESPONSE 1	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf04409g00009.1	AT1G48480.1	****	receptor-like kinase 1 LENGTH=655	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00370g01002.1	AT1G54820.1	****	Protein kinase superfamily protein LENGTH=458	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00770g02022.1	sp|B6EPS8|RL2_ALISL	*-*-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf28901g00009.1	sp|B1IZB8|AES_ECOLC	-**-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf07004g02014.1	sp|Q9SAJ5|PP133_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf09654g01014.1	sp|Q6FM63|ATG18_CANGA	--*-	Autophagy-related protein 18	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf07728g02015.1	sp|P73283|FABF_SYNY3	***-	3-oxoacyl-[acyl-carrier-protein] synthase 2	IPR020841 (Polyketide synthase, beta-ketoacyl synthase domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03939g06020.1	sp|Q2VZE7|APAG_MAGSA	*-*-	Protein ApaG	IPR001943 (UVR domain), IPR007474 (ApaG domain)	GO:0005515 (protein binding)
Niben101Scf29341g00001.1	sp|Q42963|PMT1_TOBAC	*-*-	Putrescine N-methyltransferase 1		
Niben101Scf10287g01022.1	AT4G25330.1	***-	unknown protein; Has 21 Blast hits to 21 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=229		
Niben101Scf03857g04018.1	sp|Q9SF33|TI142_ARATH	***-	Mitochondrial import inner membrane translocase subunit TIM14-2	IPR001623 (DnaJ domain)	
Niben101Scf03035g05002.1	sp|B5DF11|ZFAN5_RAT	--**	AN1-type zinc finger protein 5	IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf01429g01017.1	sp|Q9S7D1|DGDG1_ARATH	*-*-	Digalactosyldiacylglycerol synthase 1, chloroplastic		
Niben101Scf00551g01026.1	sp|A4GFC2|PROCF_OLEEU	***-	Profilin-4	IPR005455 (Profilin), IPR027310 (Profilin conserved site)	GO:0003779 (actin binding)
Niben101Scf10620g00004.1	AT1G35670.1	****	calcium-dependent protein kinase 2 LENGTH=495	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf19295g00012.1	sp|A6MMJ9|RPOB_DIOEL	*-**	DNA-directed RNA polymerase subunit beta	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf01983g00004.1			Unknown protein		
Niben101Scf01557g04008.1	sp|Q9FFC6|GDL78_ARATH	*-**	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016298 (lipase activity), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00747g02025.1	ref|NP_564634.1|	--*-	rib L18ae family [Arabidopsis thaliana]		
Niben101Scf00735g02013.1	sp|Q9SXD8|PPR90_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05183g08001.1	sp|Q9D1H7|GET4_MOUSE	*-*-	Golgi to ER traffic protein 4 homolog	IPR007317 (Uncharacterised protein family UPF0363)	
Niben101Scf30734g00003.1	sp|Q9LZQ1|TBL6_ARATH	*-*-	Protein trichome birefringence-like 6	IPR026057 (PC-Esterase)	
Niben101Scf06043g02006.1	AT3G29400.1	****	exocyst subunit exo70 family protein E1 LENGTH=658	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf00119g03013.1	gb|ACG43350.1|	***-	SLT1 protein [Zea mays]	IPR002068 (Alpha crystallin/Hsp20 domain)	
Niben101Scf01356g00012.1			Unknown protein		
Niben101Scf00350g03005.1	ref|XP_007017571.1|	***-	DNA polymerase epsilon catalytic subunit A, putative [Theobroma cacao] gb|EOY14796.1| DNA polymerase epsilon catalytic subunit A, putative [Theobroma cacao]		
Niben101Scf02237g09023.1			Unknown protein		
Niben101Scf33515g00005.1	sp|Q4R779|NOP58_MACFA	***-	Nucleolar protein 58	IPR002687 (Nop domain), IPR012974 (NOP5, N-terminal), IPR012976 (NOSIC)	
Niben101Scf01818g03021.1	ref|XP_007051196.1|	*-*-	Domain of Uncharacterized protein function 724 6, putative isoform 3 [Theobroma cacao] gb|EOX95353.1| Domain of Uncharacterized protein function 724 6, putative isoform 3 [Theobroma cacao]	IPR007930 (Protein of unknown function DUF724)	
Niben101Scf04906g00016.1	gb|KEH22373.1|	--*-	DUF4283 domain protein [Medicago truncatula]		
Niben101Scf02167g00006.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf24315g00001.1	sp|Q9FZ95|PUP3_ARATH	***-	Purine permease 3	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf06509g04001.1	AT4G15450.1	***-	Senescence/dehydration-associated protein-related LENGTH=381	IPR009686 (Senescence/spartin-associated)	
Niben101Scf13399g00027.1			Unknown protein		
Niben101Scf07541g00024.1			Unknown protein		
Niben101Scf02798g01063.1			Unknown protein		
Niben101Scf02929g06003.1			Unknown protein		
Niben101Scf01987g01018.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01738g02010.1	ref|WP_030162649.1|	***-	membrane protein [Streptomyces sp. NRRL S-244]	IPR009305 (Protein of unknown function DUF962)	
Niben101Scf01411g00010.1	sp|Q8K157|GALM_MOUSE	***-	Aldose 1-epimerase	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf02461g00012.1	sp|Q67T82|FTSH2_SYMTH	--*-	ATP-dependent zinc metalloprotease FtsH 2		
Niben101Scf24384g00001.1	AT5G09890.2	*-*-	Protein kinase family protein LENGTH=516	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07980g00003.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00841g00003.1	sp|P21529|CBP3_HORVU	*-**	Serine carboxypeptidase 3	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01577g01017.1	sp|P21873|ODPA_GEOSE	****	Pyruvate dehydrogenase E1 component subunit alpha	IPR017597 (Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y), IPR029061 (Thiamin diphosphate-binding fold)	GO:0004739 (pyruvate dehydrogenase (acetyl-transferring) activity), GO:0006096 (glycolytic process), GO:0008152 (metabolic process), GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor), GO:0043231 (intracellular membrane-bounded organelle), GO:0055114 (oxidation-reduction process)
Niben101Ctg02529g00002.1	ref|NP_001274830.1|	--*-	serine/arginine-rich splicing factor 2-like [Solanum tuberosum] gb|ABB29919.1| unknown [Solanum tuberosum]		
Niben101Scf07748g00018.1	sp|A2WT95|PLA1_ORYSI	***-	Phospholipase A1-II 1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf06461g04009.1	AT2G24360.1	*-**	Protein kinase superfamily protein LENGTH=411	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf17477g00009.1	ref|XP_002518868.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF43401.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02223g06006.1	sp|Q9LS40|ASPG1_ARATH	--*-	Protein ASPARTIC PROTEASE IN GUARD CELL 1	IPR021109 (Aspartic peptidase domain)	
Niben101Scf00294g03017.1	AT5G02810.1	*-*-	pseudo-response regulator 7 LENGTH=727		
Niben101Scf13146g00014.1	emb|CBM56257.1|	*-*-	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	
Niben101Scf03214g01021.1	sp|Q84V03|FB348_ARATH	*-*-	F-box protein		
Niben101Scf00484g03011.1	AT3G11945.2	****	homogentisate prenyltransferase LENGTH=393	IPR000537 (UbiA prenyltransferase family)	GO:0004659 (prenyltransferase activity), GO:0016021 (integral component of membrane)
Niben101Scf02045g04006.1	AT5G12920.2	*-*-	Transducin/WD40 repeat-like superfamily protein LENGTH=572	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05676g05014.1			Unknown protein		
Niben101Scf05324g00001.1	sp|P81394|MYB15_ANTMA	***-	Myb-related protein 315	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01409g03001.1	sp|C5BDY7|MDTK_EDWI9	*-*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00051g04021.1	emb|CDX94069.1|	***-	BnaC07g37030D [Brassica napus]	IPR007608 (Senescence regulator S40)	
Niben101Scf01326g07007.1	AT3G28850.1	***-	Glutaredoxin family protein LENGTH=428	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf04607g02019.1	sp|A3PAR9|RL7_PROM0	*-*-	50S ribosomal protein L7/L12	IPR000206 (Ribosomal protein L7/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00294g00014.1	sp|Q03199|IPIB_TOBAC	****	Proteinase inhibitor I-B	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding)
Niben101Scf01341g03028.1	sp|Q39266|ZFP7_ARATH	***-	Zinc finger protein 7	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf22708g01006.1	sp|Q9M2S4|LRKS4_ARATH	--*-	L-type lectin-domain containing receptor kinase S.4	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0030246 (carbohydrate binding)
Niben101Scf07695g01022.1	ref|XP_002534699.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF27685.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf13150g03001.1	gb|ABB47419.1|	--*-	expressed protein [Oryza sativa Japonica Group] dbj|BAG91237.1| unnamed protein product [Oryza sativa Japonica Group] dbj|BAG97055.1| unnamed protein product [Oryza sativa Japonica Group]		
Niben101Scf04283g02015.1	sp|A6ZP47|DED1_YEAS7	****	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf09161g01012.1	AT3G11590.1	***-	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=622		
Niben101Scf00173g06007.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf09087g01021.1	AT5G07900.1	****	Mitochondrial transcription termination factor family protein LENGTH=405	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05095g01007.1	AT1G18940.1	*-*-	Nodulin-like / Major Facilitator Superfamily protein LENGTH=526	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf03458g00002.1	AT2G14880.1	***-	SWIB/MDM2 domain superfamily protein LENGTH=141	IPR003121 (SWIB/MDM2 domain)	GO:0005515 (protein binding)
Niben101Scf10400g00005.1	sp|A5GV53|CH60_SYNR3	***-	60 kDa chaperonin	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding), GO:0042026 (protein refolding), GO:0044267 (cellular protein metabolic process)
Niben101Scf02790g05015.1	sp|Q9FJA6|RS33_ARATH	***-	40S ribosomal protein S3-3	IPR001351 (Ribosomal protein S3, C-terminal), IPR009019 (K homology domain, prokaryotic type)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03371g01005.1	sp|Q07977|SIA8B_RAT	*-**	Alpha-2,8-sialyltransferase 8B	IPR001675 (Glycosyl transferase, family 29)	GO:0006486 (protein glycosylation), GO:0008373 (sialyltransferase activity)
Niben101Scf04081g02009.1			Unknown protein		
Niben101Scf10576g01017.1	sp|Q5FGW5|NUOH_EHRRG	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf07790g02012.1	sp|Q39828|SDL5A_SOYBN	*-*-	Dynamin-related protein 5A	IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf09799g00005.1	gb|EMT22538.1|	*-*-	Disease resistance protein RGA2 [Aegilops tauschii]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf00067g01010.1	sp|Q9LZC5|GDL73_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01017g05011.1	AT1G04500.1	***-	CCT motif family protein LENGTH=386	IPR010402 (CCT domain)	GO:0005515 (protein binding)
Niben101Scf08045g02007.1			Unknown protein		
Niben101Scf00592g07006.1	sp|Q05B78|ZFY21_BOVIN	*-*-	Zinc finger FYVE domain-containing protein 21	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0046872 (metal ion binding)
Niben101Scf01985g04006.1	sp|Q5F3D7|UTP15_CHICK	****	U3 small nucleolar RNA-associated protein 15 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR018983 (U3 small nucleolar RNA-associated protein 15, C-terminal)	GO:0005515 (protein binding), GO:0005730 (nucleolus), GO:0006364 (rRNA processing)
Niben101Scf00022g00011.1	ref|XP_002516625.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF45749.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf16812g01016.1	AT5G48970.1	*-*-	Mitochondrial substrate carrier family protein LENGTH=339	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf00293g11005.1	sp|Q8VY22|TBL38_ARATH	***-	Protein trichome birefringence-like 38	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Ctg15207g00002.1	ref|NP_001047213.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf12708g02028.1	sp|Q8RHK3|SYV_FUSNN	****	Valine--tRNA ligase	IPR002303 (Valine-tRNA ligase), IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding), IPR010978 (tRNA-binding arm)	GO:0000166 (nucleotide binding), GO:0002161 (aminoacyl-tRNA editing activity), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004832 (valine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006438 (valyl-tRNA aminoacylation)
Niben101Scf01369g04022.1	sp|Q6MLS7|FTSH1_BDEBA	*-**	ATP-dependent zinc metalloprotease FtsH 1	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf06286g02003.1	AT2G02860.1	*-*-	sucrose transporter 2 LENGTH=594	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Ctg14312g00004.1	sp|A2X2K3|2ABB_ORYSI	*-**	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	IPR000009 (Protein phosphatase 2A, regulatory subunit PR55), IPR017986 (WD40-repeat-containing domain)	GO:0000159 (protein phosphatase type 2A complex), GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf03927g03014.1	gb|AID21636.1|	***-	At4g21420p-like protein [Arabidopsis lyrata]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf02074g04058.1	sp|Q7YKQ9|MATK_AVIGE	--*-	Maturase K	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf03350g09015.1	dbj|BAD38193.1|	*-**	mitochondrial transcription termination factor-like [Oryza sativa Japonica Group]	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg11012g00003.1	sp|Q0WKZ3|PP105_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf17688g00028.1	gb|KEH26436.1|	****	APO RNA-binding protein [Medicago truncatula]	IPR023342 (APO domain)	GO:0003723 (RNA binding)
Niben101Scf00595g03007.1	gb|AES62511.2|	*-*-	ATP-binding protein, putative [Medicago truncatula]		
Niben101Scf02284g00009.1	AT5G57940.1	****	cyclic nucleotide gated channel 5 LENGTH=717	IPR000048 (IQ motif, EF-hand binding site), IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0005515 (protein binding), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02381g06003.1	sp|Q46909|YGCS_ECOLI	*-**	Inner membrane metabolite transport protein YgcS	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03624g01008.1	sp|A8MQA3|PP330_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05005g00001.1	AT2G35980.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=227	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf12197g03017.1	sp|A1KL82|CYSH_MYCBP	*-**	Phosphoadenosine phosphosulfate reductase	IPR004508 (Thioredoxin-independent 5'-adenylylsulphate reductase), IPR012336 (Thioredoxin-like fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0019419 (sulfate reduction), GO:0045454 (cell redox homeostasis), GO:0055114 (oxidation-reduction process)
Niben101Scf02043g06010.1	sp|F1NBT0|STK10_CHICK	*-**	Serine/threonine-protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02890g00012.1	emb|CDY69512.1|	***-	BnaAnng30650D [Brassica napus]	IPR008004 (Uncharacterised protein family UPF0503)	
Niben101Scf04764g10017.1	gb|AES73754.2|	*-*-	zinc finger protein, putative [Medicago truncatula]		
Niben101Scf01918g04015.1	sp|Q9DC48|PRP17_MOUSE	*-*-	Pre-mRNA-processing factor 17	IPR003613 (U box domain), IPR013915 (Pre-mRNA-splicing factor 19), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf03340g06007.1	AT2G44020.1	****	Mitochondrial transcription termination factor family protein LENGTH=507	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00858g00008.1	AT1G75710.1	*-*-	C2H2-like zinc finger protein LENGTH=462	IPR007087 (Zinc finger, C2H2), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain)	GO:0003950 (NAD+ ADP-ribosyltransferase activity), GO:0046872 (metal ion binding)
Niben101Scf05311g00008.1	ref|XP_003620005.1|	***-	GRF zinc finger containing protein [Medicago truncatula]		
Niben101Scf06326g00010.1	sp|Q8L706|SYT5_ARATH	***-	Synaptotagmin-5	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf14562g00013.1	sp|Q9S7G7|MB3R1_ARATH	*-*-	Myb-related protein 3R-1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05633g00015.1	AT2G27490.1	****	dephospho-CoA kinase family LENGTH=232	IPR001977 (Dephospho-CoA kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004140 (dephospho-CoA kinase activity), GO:0005524 (ATP binding), GO:0015937 (coenzyme A biosynthetic process)
Niben101Scf08080g00009.1	sp|O82139|CAS1_PANGI	***-	Cycloartenol Synthase	IPR018333 (Squalene cyclase)	GO:0016866 (intramolecular transferase activity)
Niben101Scf00764g03003.1	sp|P52427|PSA4_SPIOL	****	Proteasome subunit alpha type-4	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf05329g01008.1	AT3G56200.1	***-	Transmembrane amino acid transporter family protein LENGTH=435	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf03936g01006.1	sp|Q93ZY3|STT3A_ARATH	***-	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	IPR003674 (Oligosaccharyl transferase, STT3 subunit)	GO:0004576 (oligosaccharyl transferase activity), GO:0006486 (protein glycosylation), GO:0016020 (membrane)
Niben101Scf03431g00011.1	ref|XP_002535064.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF27325.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03848g02005.1	sp|O14435|GBB_CRYPA	*-**	Guanine nucleotide-binding protein subunit beta	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf05092g01009.1	AT1G53040.1	***-	Protein of unknown function (DUF616) LENGTH=540	IPR006852 (Protein of unknown function DUF616)	
Niben101Scf13640g00006.1	sp|Q1LZC5|ANR54_BOVIN	--*-	Ankyrin repeat domain-containing protein 54	IPR011333 (BTB/POZ fold), IPR020683 (Ankyrin repeat-containing domain), IPR021094 (NPR1/NIM1-like, C-terminal), IPR024228 (Domain of unknown function DUF3420)	GO:0005515 (protein binding)
Niben101Scf03173g01008.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06509g05007.1	gb|KEH27185.1|	***-	Avr9/Cf-9 rapidly elicited protein [Medicago truncatula]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf04052g02009.1	sp|Q9XEC6|CRK36_ARATH	*-**	Cysteine-rich receptor-like protein kinase 36	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11685g00006.1	sp|Q6LA43|APRR2_ARATH	*-*-	Two-component response regulator-like APRR2	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf03488g08010.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03488g06017.1	sp|Q3SWX0|NIPA2_BOVIN	****	Magnesium transporter NIPA2	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf01319g06004.1	sp|Q9CPC8|Y119_PASMU	-**-	UPF0307 protein PM0119	IPR006839 (Ribosome-associated, YjgA), IPR023153 (PSPTO4464-like domain)	
Niben101Scf07437g04001.1	AT1G70950.1	*-*-	TPX2 (targeting protein for Xklp2) protein family LENGTH=478		
Niben101Scf07953g01009.1	AT4G28390.1	***-	ADP/ATP carrier 3 LENGTH=379	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf04103g04015.1	ref|XP_007013284.1|	****	Integral membrane protein-like isoform 1 [Theobroma cacao] ref|XP_007013285.1| Integral membrane protein-like isoform 1 [Theobroma cacao] gb|EOY30903.1| Integral membrane protein-like isoform 1 [Theobroma cacao] gb|EOY30904.1| Integral membrane protein-like isoform 1 [Theobroma cacao]	IPR002794 (Protein of unknown function DUF92, TMEM19)	GO:0016021 (integral component of membrane)
Niben101Scf08729g02027.1	sp|Q68DK2|ZFY26_HUMAN	*-*-	Zinc finger FYVE domain-containing protein 26		
Niben101Scf00341g03009.1	sp|Q9CWZ3|RBM8A_MOUSE	--**	RNA-binding protein 8A	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01365g01014.1	AT1G34320.1	***-	Protein of unknown function (DUF668) LENGTH=657	IPR007700 (Protein of unknown function DUF668), IPR021864 (Protein of unknown function DUF3475)	
Niben101Scf10576g00007.1	sp|Q9S9Q9|Y1044_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf04077g05016.1	sp|A9AA58|SYFB_METM6	*-**	Phenylalanine--tRNA ligase beta subunit	IPR009061 (DNA binding domain, putative)	GO:0000287 (magnesium ion binding), GO:0003723 (RNA binding), GO:0005524 (ATP binding), GO:0006432 (phenylalanyl-tRNA aminoacylation)
Niben101Scf02359g00028.1	AT1G23000.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=358	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf12680g03014.1	sp|A1U7J4|YIDC_MARHV	*-**	Membrane protein insertase YidC	IPR001708 (Membrane insertase OXA1/ALB3/YidC), IPR028055 (Membrane insertase YidC/Oxa1, C-terminal)	GO:0016021 (integral component of membrane), GO:0051205 (protein insertion into membrane)
Niben101Scf00276g07003.1	sp|Q9LQL2|PTR14_ARATH	*-*-	Protein NRT1/ PTR FAMILY 7.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05279g05007.1	AT1G19440.1	***-	3-ketoacyl-CoA synthase 4 LENGTH=516	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf14606g01001.1	ref|XP_002524806.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF37649.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02111g14012.1	ref|WP_011434181.1|	****	4Fe-4S ferredoxin [Synechococcus sp. JA-2-3B'a(2-13)] ref|YP_478819.1| (Fe-S)-binding protein [Synechococcus sp. JA-2-3B'a(2-13)] gb|ABD03556.1| iron-sulfur cluster-binding protein [Synechococcus sp. JA-2-3B'a(2-13)]	IPR013283 (ABC transporter ABCE), IPR021039 (Iron-sulphur binding protein LdpA, C-terminal)	GO:0051536 (iron-sulfur cluster binding)
Niben101Scf10927g00013.1	sp|Q8RY79|TYDC1_ARATH	*-*-	Tyrosine decarboxylase 1	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Ctg15867g00004.1	AT5G02460.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=399	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01510g00028.1	sp|Q2KID2|NTH_BOVIN	***-	Endonuclease III-like protein 1	IPR005759 (Endonuclease III), IPR011257 (DNA glycosylase), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0003906 (DNA-(apurinic or apyrimidinic site) lyase activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf00046g07018.1	ref|XP_003601496.1|	*-*-	Membrane protein, putative [Medicago truncatula]		
Niben101Scf04796g00034.1	AT3G09950.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=92		
Niben101Scf08160g01012.1	sp|Q9M069|E137_ARATH	***-	Glucan endo-1,3-beta-glucosidase 7	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00234g01013.1	ref|XP_006370969.1|	--*-	DNA-binding family protein [Populus trichocarpa] gb|ERP48766.1| DNA-binding family protein [Populus trichocarpa]	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf06332g03016.1	sp|O26113|RL2_METTH	*-*-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00978g12003.1	ref|XP_002525632.1|	****	hydrolase, acting on ester bonds, putative [Ricinus communis] gb|EEF36750.1| hydrolase, acting on ester bonds, putative [Ricinus communis]	IPR007312 (Phosphoesterase)	GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf07156g01005.1	sp|Q9FHH5|GDU3_ARATH	*-*-	Protein GLUTAMINE DUMPER 3		
Niben101Scf06975g00017.1	AT4G35720.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=325	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf12318g00018.1	sp|P93541|DHE3_SOLLC	***-	Glutamate dehydrogenase	IPR006095 (Glutamate/phenylalanine/leucine/valine dehydrogenase), IPR016040 (NAD(P)-binding domain)	GO:0006520 (cellular amino acid metabolic process), GO:0016491 (oxidoreductase activity), GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf02146g00007.1	sp|P98204|ALA1_ARATH	*-**	Phospholipid-transporting ATPase 1	IPR006539 (P-type ATPase, subfamily IV)	GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane)
Niben101Scf01066g05009.1	emb|CDY67948.1|	***-	BnaC06g40830D [Brassica napus]		
Niben101Scf05862g00015.1	sp|O81832|Y4729_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR013227 (PAN-2 domain)	
Niben101Scf04664g02013.1	sp|P53800|FDFT_NICBE	***-	Squalene synthase	IPR002060 (Squalene/phytoene synthase)	GO:0009058 (biosynthetic process), GO:0016740 (transferase activity), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf04686g01001.1	ref|NP_191672.1|	*-**	alpha-1,4-galacturon [Arabidopsis thaliana] emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gb|AHL38722.1| glycosyltransferase, partial [Arabidopsis thaliana]	IPR029993 (Plant galacturonosyltransferase GAUT)	GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf01145g02002.1	sp|Q17TI5|BRX_ARATH	***-	Protein BREVIS RADIX	IPR013591 (Brevis radix (BRX) domain), IPR027988 (Transcription factor  BREVIS RADIX, N-terminal domain)	
Niben101Scf08370g00010.1	AT5G47650.1	****	nudix hydrolase homolog 2 LENGTH=278	IPR003293 (Nudix hydrolase 6-like)	GO:0016787 (hydrolase activity)
Niben101Scf00806g01001.1			Unknown protein		
Niben101Scf02112g02015.1	gb|ABI34321.1|	--*-	RNase H family protein [Solanum demissum]	IPR012337 (Ribonuclease H-like domain)	
Niben101Scf02305g00003.1	AT4G27280.1	****	Calcium-binding EF-hand family protein LENGTH=130	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02752g15004.1			Unknown protein		
Niben101Scf07152g04032.1	sp|Q84K00|NAC78_ARATH	***-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03517g00001.1	ref|NP_001042953.2|	***-	product [Oryza sativa Japonica Group] dbj|BAF04867.2| [Oryza sativa Japonica Group]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf02354g13005.1	AT4G32760.2	*-*-	ENTH/VHS/GAT family protein LENGTH=676	IPR004152 (GAT domain), IPR008942 (ENTH/VHS)	GO:0005622 (intracellular), GO:0006886 (intracellular protein transport)
Niben101Scf04377g02011.1	sp|Q96499|RL44_GOSHI	***-	60S ribosomal protein L44	IPR000552 (Ribosomal protein L44e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05588g13005.1	sp|Q9PR63|GYRA_UREPA	--*-	DNA gyrase subunit A		
Niben101Scf00490g01040.1	sp|A7VLV1|SGRW_PEA	***-	Protein STAY-GREEN, chloroplastic	IPR024438 (Staygreen protein)	
Niben101Scf05330g02007.1	AT5G61040.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=590		
Niben101Scf00925g00006.1	AT1G14590.1	***-	Nucleotide-diphospho-sugar transferase family protein LENGTH=386	IPR005069 (Nucleotide-diphospho-sugar transferase)	
Niben101Scf09416g00007.1	sp|Q8LPL6|AP2A1_ARATH	*-**	AP-2 complex subunit alpha-1	IPR009028 (Coatomer/calthrin adaptor appendage, C-terminal subdomain), IPR013041 (Coatomer/clathrin adaptor appendage, Ig-like subdomain)	GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030131 (clathrin adaptor complex)
Niben101Scf03307g04012.1	emb|CBM56257.1|	*-**	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf16329g00020.1	sp|Q10CQ8|PHYC_ORYSJ	***-	Phytochrome C	IPR001294 (Phytochrome), IPR005467 (Signal transduction histidine kinase, core), IPR029016 (GAF domain-like)	GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0007165 (signal transduction), GO:0009584 (detection of visible light), GO:0009585 (red, far-red light phototransduction), GO:0009881 (photoreceptor activity), GO:0017006 (protein-tetrapyrrole linkage), GO:0018298 (protein-chromophore linkage), GO:0042803 (protein homodimerization activity)
Niben101Scf09471g00002.1	sp|O82012|HSP12_SOLPE	***-	17.6 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf05519g01004.1	sp|Q76LC6|RBM24_DANRE	*-**	RNA-binding protein 24	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02880g00013.1	sp|Q15UY7|MSBA_PSEA6	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf03015g05009.1	AT1G67080.1	***-	abscisic acid (aba)-deficient 4 LENGTH=220		
Niben101Scf01035g03002.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05855g01012.1	sp|P10973|NLTPA_RICCO	****	Non-specific lipid-transfer protein A	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf04675g07003.1	sp|P49043|VPE_CITSI	***-	Vacuolar-processing enzyme	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf10423g01007.1	gb|ABN08700.1|	*-*-	Endonuclease/exonuclease/phosphatase [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00173g05006.1	AT2G36290.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=364	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00745g03013.1	sp|Q9LU15|AHP4_ARATH	***-	Histidine-containing phosphotransfer protein 4	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity)
Niben101Scf04528g09014.1	gb|KEH39056.1|	***-	wound-responsive family protein [Medicago truncatula]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf08504g02005.1	sp|Q9SBV9|CYCLD_ANTMH	*-*-	Transcription factor CYCLOIDEA	IPR005333 (Transcription factor, TCP)	
Niben101Scf02405g04011.1	AT3G53520.4	***-	UDP-glucuronic acid decarboxylase 1 LENGTH=458	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf02486g08009.1	sp|Q4HXT6|PMP3_GIBZE	--**	Plasma membrane proteolipid 3	IPR000612 (Proteolipid membrane potential modulator)	GO:0016021 (integral component of membrane)
Niben101Scf01077g02004.1	prf||1207289A	*-*-	reverse transcriptase related protein		
Niben101Scf04395g00001.1	AT1G28510.1	***-	Optic atrophy 3 protein (OPA3) LENGTH=171	IPR010754 (Optic atrophy 3-like)	
Niben101Scf08446g03001.1	AT4G04970.1	****	glucan synthase-like 1 LENGTH=1768	IPR003440 (Glycosyl transferase, family 48), IPR026899 (1,3-beta-glucan synthase subunit FKS1-like, domain-1)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf08566g07003.1	sp|Q803I2|ERGI3_DANRE	***-	Endoplasmic reticulum-Golgi intermediate compartment protein 3	IPR012936 (Endoplasmic reticulum vesicle transporter, C-terminal)	
Niben101Scf05649g05017.1	emb|CDY53602.1|	*-*-	BnaC09g51900D [Brassica napus]		
Niben101Scf02066g01005.1	AT3G48670.1	***-	XH/XS domain-containing protein LENGTH=647	IPR005379 (Uncharacterised domain XH), IPR005380 (XS domain), IPR005381 (Zinc finger-XS domain)	GO:0031047 (gene silencing by RNA)
Niben101Scf04653g03012.1	sp|Q11HU1|TRPC_CHESB	****	Indole-3-glycerol phosphate synthase	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004425 (indole-3-glycerol-phosphate synthase activity), GO:0006568 (tryptophan metabolic process), GO:0008152 (metabolic process)
Niben101Scf04001g03011.1	ref|NP_001045287.1|	--*-	[Oryza sativa Japonica Group] dbj|BAF07201.1| [Oryza sativa Japonica Group]	IPR012337 (Ribonuclease H-like domain), IPR025558 (Domain of unknown function DUF4283)	GO:0003676 (nucleic acid binding)
Niben101Scf00116g05006.1	AT1G11360.1	***-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=242	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf01582g13009.1	AT4G20380.8	***-	LSD1 zinc finger family protein LENGTH=210	IPR005735 (Zinc finger, LSD1-type)	
Niben101Scf00893g01014.1	sp|Q84V03|FB348_ARATH	*-*-	F-box protein		
Niben101Scf02564g06002.1	gb|KEH31355.1|	*-*-	stress up-regulated Nod 19 protein [Medicago truncatula]	IPR011692 (Stress up-regulated Nod 19)	
Niben101Scf09764g02003.1	ref|NP_001175401.1|	***-	[Oryza sativa Japonica Group] dbj|BAH94129.1| [Oryza sativa Japonica Group]	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf02974g00005.1	sp|O81635|ATK4_ARATH	*-**	Kinesin-4	IPR001715 (Calponin homology domain), IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf09978g01019.1	sp|Q9FJ40|GDL86_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00897g00001.1	sp|C3VEQ3|NCED_ONCHC	***-	9-cis-epoxycarotenoid dioxygenase, chloroplastic	IPR004294 (Carotenoid oxygenase)	
Niben101Scf01607g05005.1	sp|P74230|RS12_SYNY3	*-**	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf01818g04001.1	sp|Q6LXE3|RL14_METMP	***-	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04764g06001.1	sp|Q54YW8|RPAB3_DICDI	****	DNA-directed RNA polymerases I, II, and III subunit rpabc3	IPR005570 (RNA polymerase, Rpb8)	GO:0006351 (transcription, DNA-templated)
Niben101Scf03998g00019.1	sp|Q9JHW9|AL1A3_MOUSE	****	Aldehyde dehydrogenase family 1 member A3	IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf05764g00014.1	sp|D2Q1C4|MSHA_KRIFD	*-*-	D-inositol 3-phosphate glycosyltransferase	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf01890g02001.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13525g01009.1	gb|KEH43149.1|	***-	knotted 1-binding protein [Medicago truncatula]		
Niben101Scf02004g00008.1	ref|XP_007034793.1|	--*-	NAD(P)H-quinone oxidoreductase subunit H, putative isoform 1 [Theobroma cacao] ref|XP_007034794.1| NAD(P)H-quinone oxidoreductase subunit H, putative isoform 1 [Theobroma cacao] gb|EOY05719.1| NAD(P)H-quinone oxidoreductase subunit H, putative isoform 1 [Theobroma cacao] gb|EOY05720.1| NAD(P)H-quinone oxidoreductase subunit H, putative isoform 1 [Theobroma cacao]		
Niben101Scf03839g04019.1	sp|A9I7K9|GCSP_BORPD	****	Glycine dehydrogenase (decarboxylating)	IPR020581 (Glycine cleavage system P protein)	GO:0003824 (catalytic activity), GO:0004375 (glycine dehydrogenase (decarboxylating) activity), GO:0006544 (glycine metabolic process), GO:0006546 (glycine catabolic process), GO:0030170 (pyridoxal phosphate binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00163g06002.1	sp|Q9SZL8|FRS5_ARATH	***-	Protein FAR1-RELATED SEQUENCE 5	IPR007527 (Zinc finger, SWIM-type), IPR018289 (MULE transposase domain)	GO:0008270 (zinc ion binding)
Niben101Scf30081g00014.1	ref|XP_007017230.1|	***-	Cold regulated gene 27, putative isoform 3 [Theobroma cacao] gb|EOY14455.1| Cold regulated gene 27, putative isoform 3 [Theobroma cacao]		
Niben101Scf03141g03005.1	AT1G44130.1	***-	Eukaryotic aspartyl protease family protein LENGTH=405	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04932g00017.1	AT2G37740.1	*-*-	zinc-finger protein 10 LENGTH=304	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Ctg13685g00001.1			Unknown protein		
Niben101Scf05880g03032.1			Unknown protein		
Niben101Scf10855g08001.1	sp|Q95044|UBE2C_SPISO	-**-	Ubiquitin-conjugating enzyme E2 C	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf05317g00004.1	sp|P62302|RS13_SOYBN	***-	40S ribosomal protein S13	IPR000589 (Ribosomal protein S15), IPR012606 (Ribosomal protein S13/S15, N-terminal)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00430g01012.1	AT1G72420.1	***-	NADH:ubiquinone oxidoreductase intermediate-associated protein 30 LENGTH=228	IPR008979 (Galactose-binding domain-like), IPR013857 (NADH:ubiquinone oxidoreductase intermediate-associated protein 30)	
Niben101Scf01966g01002.1	gb|AAU90304.1|	***-	MuDR family transposase containing protein [Solanum demissum]	IPR004332 (Transposase, MuDR, plant), IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf05329g00003.1	sp|Q9M5P8|SNAA_SOLTU	***-	Alpha-soluble NSF attachment protein	IPR000744 (NSF attachment protein)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport)
Niben101Scf08572g00002.1	sp|Q9XJ60|MAD50_ORYSJ	*-*-	MADS-box transcription factor 50	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf07688g00001.1	sp|P83326|PMEI_ACTDE	****	Pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf09928g00011.1	sp|Q8L397|DNAJ_ACHLA	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf03839g04018.1	sp|Q2L926|CLPP_GOSHI	--*-	ATP-dependent Clp protease proteolytic subunit	IPR009631 (Uncharacterised protein family Ycf36)	
Niben101Scf04117g10024.1	gb|ABD78324.1|	***-	SLL1 protein [Primula vulgaris]		
Niben101Scf06205g02016.1	sp|P93735|ELIP1_ARATH	***-	Early light-induced protein 1, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf07486g01009.1	sp|D3FA80|FTSH2_CONWI	*-**	ATP-dependent zinc metalloprotease FtsH 2	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027243 (Mitochondrial chaperone BCS1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0034551 (mitochondrial respiratory chain complex III assembly)
Niben101Scf03282g08010.1	sp|Q28CM8|ARFG2_XENTR	*-**	ADP-ribosylation factor GTPase-activating protein 2	IPR000008 (C2 domain), IPR001164 (Arf GTPase activating protein)	GO:0005515 (protein binding), GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf04411g01001.1	sp|Q8UVY2|BRX1_XENLA	***-	Ribosome biogenesis protein BRX1 homolog	IPR004154 (Anticodon-binding), IPR007109 (Brix domain), IPR026532 (Ribosome biogenesis protein BRX1)	
Niben101Scf07391g03014.1	AT1G63120.1	***-	RHOMBOID-like 2 LENGTH=317	IPR002610 (Peptidase S54, rhomboid)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf03374g08019.1	sp|O49564|CRK27_ARATH	*-**	Cysteine-rich receptor-like protein kinase 27	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01959g06013.1	sp|Q13823|NOG2_HUMAN	*-*-	Nucleolar GTP-binding protein 2	IPR012971 (Nucleolar GTP-binding protein 2, N-terminal domain), IPR024929 (Nucleolar GTP-binding protein 2)	GO:0005730 (nucleolus)
Niben101Scf05286g00003.1	sp|Q0J9V6.2|Y4294_ORYSJ	--*-	RecName: Full=Uncharacterized protein product [Oryza sativa Japonica Group]		
Niben101Scf00206g00010.1	AT3G21310.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=383	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf03497g12007.1	sp|Q96EC8|YIPF6_HUMAN	*-*-	Protein YIPF6	IPR006977 (Yip1 domain)	GO:0016020 (membrane)
Niben101Ctg13003g00003.1	gb|KEH39793.1|	***-	DUF1997 family protein [Medicago truncatula]	IPR018971 (Protein of unknown function DUF1997)	
Niben101Scf04979g00007.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf01582g13008.1			Unknown protein		
Niben101Scf06789g04018.1	sp|P51532|SMCA4_HUMAN	--*-	Transcription activator BRG1		
Niben101Scf03709g00007.1	sp|Q6NNI3|LSH1_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1	IPR006936 (ALOG domain)	
Niben101Scf13002g03019.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf07875g00001.1	sp|Q1MN12|DNAJ_RHIL3	***-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf07433g00001.1	sp|Q9QWZ1|RAD1_MOUSE	***-	Cell cycle checkpoint protein RAD1	IPR003021 (Rad1/Rec1/Rad17)	GO:0005634 (nucleus), GO:0006281 (DNA repair)
Niben101Scf05732g00017.1	gb|AFX95944.1|	***-	green-ripe protein [Solanum melongena]	IPR008496 (Protein of unknown function DUF778)	
Niben101Scf05283g00018.1	sp|P83774|GBLP_CANAL	*-**	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf00217g02002.1	AT2G43280.1	***-	Far-red impaired responsive (FAR1) family protein LENGTH=206	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf01256g00007.1	sp|C5D8P2|SYI_GEOSW	****	Isoleucine--tRNA ligase	IPR002301 (Isoleucine-tRNA ligase), IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)	GO:0000166 (nucleotide binding), GO:0002161 (aminoacyl-tRNA editing activity), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004822 (isoleucine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006428 (isoleucyl-tRNA aminoacylation)
Niben101Scf00103g00018.1	sp|P85894|LTP1_MORNI	****	Non-specific lipid-transfer protein 1	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf00854g08047.1			Unknown protein		
Niben101Scf03687g01012.1	sp|P30819|NADC_PSEAE	****	Nicotinate-nucleotide pyrophosphorylase [carboxylating]	IPR004393 (Nicotinate-nucleotide pyrophosphorylase)	GO:0003824 (catalytic activity), GO:0004514 (nicotinate-nucleotide diphosphorylase (carboxylating) activity), GO:0009435 (NAD biosynthetic process), GO:0016763 (transferase activity, transferring pentosyl groups), GO:0019363 (pyridine nucleotide biosynthetic process)
Niben101Scf01227g04027.1			Unknown protein		
Niben101Scf05373g02004.1	sp|Q9U7D0|H4_MASBA	*-*-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly), GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity)
Niben101Scf04939g01007.1	AT4G05110.1	****	equilibrative nucleoside transporter 6 LENGTH=418	IPR002259 (Equilibrative nucleoside transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005337 (nucleoside transmembrane transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf00914g02003.1	ref|XP_002514181.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF48135.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01954g01020.1	sp|Q9SFB8|PI5K6_ARATH	****	Phosphatidylinositol 4-phosphate 5-kinase 6	IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf07790g03023.1	sp|Q402F4|TOM1_TOBAC	***-	Tobamovirus multiplication protein 1	IPR009457 (Domain of unknown function DUF1084)	
Niben101Scf06967g02005.1	sp|Q9JUF4|HSCA_NEIMA	--*-	Chaperone protein HscA homolog		
Niben101Scf02160g00017.1	sp|Q9B1Z4|CYB_MUSST	***-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal), IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf03015g05008.1	AT5G15270.2	****	RNA-binding KH domain-containing protein LENGTH=548	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf01396g02011.1	sp|B9DNJ2|MTNN_STACT	***-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	IPR018017 (Nucleoside phosphorylase)	GO:0003824 (catalytic activity), GO:0009116 (nucleoside metabolic process)
Niben101Scf05506g00007.1	sp|Q9SR97|YIPL1_ARATH	-**-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf01775g01014.1	sp|P52948|NUP98_HUMAN	*-**	Nuclear pore complex protein Nup98-Nup96	IPR007230 (Peptidase S59, nucleoporin)	GO:0005643 (nuclear pore), GO:0006810 (transport)
Niben101Scf05629g00006.1	sp|Q9CAY3|GPAT5_ARATH	***-	Glycerol-3-phosphate acyltransferase 5	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf05310g02005.1	emb|CDX80466.1|	***-	BnaC07g29780D [Brassica napus]	IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf01176g01032.1	sp|Q9XGM8|MGAT1_ARATH	****	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	IPR004139 (Glycosyl transferase, family 13), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0006486 (protein glycosylation), GO:0008375 (acetylglucosaminyltransferase activity)
Niben101Scf01521g16013.1	sp|O82244|ALG3_ARATH	***-	Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase	IPR007873 (Glycosyltransferase, ALG3)	GO:0005783 (endoplasmic reticulum), GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf09260g03027.1	AT1G14750.1	*-*-	Cyclin family protein LENGTH=578	IPR002557 (Chitin binding domain), IPR013763 (Cyclin-like)	GO:0005576 (extracellular region), GO:0006030 (chitin metabolic process), GO:0008061 (chitin binding)
Niben101Scf00525g04010.1	sp|P54864|JUN_SERCA	--*-	Transcription factor AP-1		
Niben101Scf00624g00002.1	AT5G16010.1	***-	3-oxo-5-alpha-steroid 4-dehydrogenase family protein LENGTH=268	IPR001104 (3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal)	GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
Niben101Scf02502g14001.1	sp|Q5HMF5|ILVA_STAEQ	****	L-threonine dehydratase biosynthetic IlvA	IPR001721 (ACT-like domain), IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme), IPR005787 (Threonine dehydratase, biosynthetic)	GO:0004794 (L-threonine ammonia-lyase activity), GO:0006520 (cellular amino acid metabolic process), GO:0009097 (isoleucine biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf07004g00007.1	sp|Q0ZPV7|CXE1_ACTER	***-	Carboxylesterase 1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf04686g01002.1	sp|Q9LSG3|GAUT8_ARATH	*-**	Galacturonosyltransferase 8	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf08368g05015.1	AT1G70680.1	***-	Caleosin-related family protein LENGTH=192	IPR007736 (Caleosin)	
Niben101Scf04871g22002.1	sp|Q3AET7|GCST_CARHZ	--*-	Aminomethyltransferase		
Niben101Scf03188g07009.1	sp|Q8H038|KATAM_ORYSJ	***-	Xyloglucan galactosyltransferase KATAMARI1 homolog	IPR004263 (Exostosin-like)	
Niben101Scf03839g02001.1	sp|Q944K3|HDA2_ARATH	***-	Histone deacetylase 2	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	
Niben101Scf03863g01005.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	
Niben101Scf02945g01002.1	sp|Q8VXU6|DI194_ARATH	***-	Protein DEHYDRATION-INDUCED 19 homolog 4	IPR008598 (Drought induced 19 protein-like, zinc-binding domain), IPR027935 (Protein dehydration-induced 19, C-terminal)	
Niben101Scf00862g02047.1			Unknown protein		
Niben101Scf09348g00004.1	emb|CBY05740.1|	*-*-	ASR2 protein [Solanum chilense]	IPR003496 (ABA/WDS induced protein)	GO:0006950 (response to stress)
Niben101Scf02709g00001.1	AT4G15802.1	***-	heat shock factor binding protein LENGTH=86	IPR009643 (Heat shock factor binding 1)	
Niben101Scf07491g00005.1	ref|XP_007017916.1|	*-*-	Major facilitator superfamily protein isoform 2 [Theobroma cacao] gb|EOY15141.1| Major facilitator superfamily protein isoform 2 [Theobroma cacao]		
Niben101Scf01626g04003.1	sp|Q9C9H7|RLP12_ARATH	*-*-	Receptor-like protein 12	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf05304g10005.1	sp|Q39204|MYC2_ARATH	*-*-	Transcription factor MYC2	IPR025610 (Transcription factor MYC/MYB N-terminal)	
Niben101Scf00863g10002.1	prf||1808322A	****	stearoyl-acyl carrier protein desaturase	IPR005067 (Fatty acid desaturase, type 2), IPR009078 (Ferritin-like superfamily)	GO:0006631 (fatty acid metabolic process), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0045300 (acyl-[acyl-carrier-protein] desaturase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05468g10025.1	sp|A5YVF1|SGS3_SOLLC	****	Protein SUPPRESSOR OF GENE SILENCING 3	IPR005380 (XS domain), IPR005381 (Zinc finger-XS domain)	GO:0031047 (gene silencing by RNA)
Niben101Scf03839g06006.1	sp|O82643|ZIP9_ARATH	****	Zinc transporter 9	IPR003689 (Zinc/iron permease)	GO:0005385 (zinc ion transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport), GO:0071577 (zinc ion transmembrane transport)
Niben101Scf01322g03005.1	AT1G77210.1	****	sugar transporter 14 LENGTH=504	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf05217g00010.1	sp|Q8NEM2|SHCBP_HUMAN	--**	SHC SH2 domain-binding protein 1	IPR001810 (F-box domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0005515 (protein binding)
Niben101Scf01164g00011.1	sp|Q9XQ96|NU2C_BRANA	*-*-	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit), IPR023798 (Ribosomal protein S7 domain)	
Niben101Scf00046g07019.1	ref|XP_003601496.1|	*-*-	Membrane protein, putative [Medicago truncatula]		
Niben101Scf01841g03006.1	sp|P61219|RPAB2_MOUSE	****	DNA-directed RNA polymerases I, II, and III subunit RPABC2	IPR006110 (RNA polymerase, subunit omega/K/RPB6)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf00542g03004.1	sp|Q7SFY2|MCR1_NEUCR	****	NADH-cytochrome b5 reductase 2	IPR001433 (Oxidoreductase FAD/NAD(P)-binding), IPR001834 (NADH:cytochrome b5 reductase (CBR)), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05118g09003.1	AT2G46040.1	****	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=562	IPR000949 (ELM2 domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf05787g00008.1	sp|Q8VCX2|S35C2_MOUSE	*-*-	Solute carrier family 35 member C2	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf18106g02004.1	ref|XP_002511068.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF51670.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07326g00005.1	sp|Q5XVF0|MEE12_ARATH	***-	TATA box-binding protein-associated factor RNA polymerase I subunit B		
Niben101Scf00273g07004.1	emb|CDX67896.1|	***-	BnaA07g19360D [Brassica napus]	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf14102g01013.1			Unknown protein		
Niben101Scf02221g04004.1	gb|EMT13698.1|	*-*-	CTD small phosphatase-like protein 2 [Aegilops tauschii]		
Niben101Scf02793g25007.1	gb|AAG37451.1|	***-	seed maturation protein LEA 4 [Glycine tomentella]	IPR005513 (Late embryogenesis abundant protein, LEA-25/LEA-D113)	GO:0009790 (embryo development)
Niben101Scf01696g06033.1	AT5G28770.2	****	bZIP transcription factor family protein LENGTH=314	IPR004827 (Basic-leucine zipper domain), IPR020983 (Basic leucine-zipper, C-terminal)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00705g02004.1	sp|Q9FID0|GL114_ARATH	***-	Germin-like protein subfamily 1 member 14	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf02174g00007.1	sp|O82176|EXOL7_ARATH	***-	Protein EXORDIUM-like 7	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf00344g00001.1			Unknown protein		
Niben101Scf01511g02014.1			Unknown protein		
Niben101Scf09132g00013.1	AT2G16090.1	***-	RING/U-box superfamily protein LENGTH=593	IPR002867 (Zinc finger, C6HC-type)	GO:0008270 (zinc ion binding)
Niben101Scf00683g03048.1	sp|Q9MAU3|TAF6_ARATH	****	Transcription initiation factor TFIID subunit 6	IPR009072 (Histone-fold), IPR011442 (Domain of unknown function DUF1546)	GO:0005634 (nucleus), GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity), GO:0051090 (regulation of sequence-specific DNA binding transcription factor activity)
Niben101Ctg08558g00002.1	sp|Q8L397|DNAJ_ACHLA	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf02452g04010.1	AT1G77290.1	***-	Glutathione S-transferase family protein LENGTH=266	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf02621g01002.1	gb|KFJ92987.1|	****	16S rRNA methyltransferase [Pseudomonas sp. 1-7]	IPR006700 (Ribosomal RNA small subunit methyltransferase E), IPR029028 (Alpha/beta knot methyltransferases)	GO:0006364 (rRNA processing), GO:0008168 (methyltransferase activity)
Niben101Scf21584g00017.1	AT2G21500.2	***-	RING/U-box superfamily protein LENGTH=421	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf39539g00005.1	sp|Q0IIS3|EPHX3_XENTR	*-*-	Epoxide hydrolase 3	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf07511g02010.1	AT5G10500.1	***-	Kinase interacting (KIP1-like) family protein LENGTH=848	IPR011684 (KIP1-like)	
Niben101Scf00121g00024.1			Unknown protein		
Niben101Scf00133g06002.1	sp|O43683|BUB1_HUMAN	*-*-	Mitotic checkpoint serine/threonine-protein kinase BUB1	IPR015661 (Mitotic checkpoint serine/threonine protein kinase Bub1/Mitotic spindle checkpoint component Mad3)	
Niben101Scf00067g00005.1	sp|Q9LFC5|PP360_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08176g00005.1	AT2G24360.1	*-**	Protein kinase superfamily protein LENGTH=411	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05713g01013.1	sp|O51453|RS13_BORBU	-**-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH)	
Niben101Scf06436g02010.1	sp|P93788|REMO_SOLTU	*-*-	Remorin	IPR005516 (Remorin, C-terminal)	
Niben101Scf06357g00017.1	AT5G60620.1	***-	glycerol-3-phosphate acyltransferase 9 LENGTH=376	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf02318g03012.1	sp|Q9FLJ2|NC100_ARATH	*-*-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05849g00005.1	AT1G55190.1	***-	PRA1 (Prenylated rab acceptor) family protein LENGTH=189	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf01568g01026.1			Unknown protein		
Niben101Scf00751g03009.1	sp|Q39172|P1_ARATH	*-**	NADP-dependent alkenal double bond reductase P1	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09960g01015.1	AT5G50210.1	****	quinolinate synthase LENGTH=718	IPR003473 (Quinolinate synthetase A), IPR003808 (Fe-S metabolism associated domain, SufE-like)	GO:0008987 (quinolinate synthetase A activity), GO:0009435 (NAD biosynthetic process), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf03733g03007.1	sp|O14435|GBB_CRYPA	*-**	Guanine nucleotide-binding protein subunit beta	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf08194g02003.1	sp|Q9LNU6|PPR53_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05311g00009.1	AT5G32440.3	***-	Ubiquitin system component Cue protein LENGTH=265	IPR009060 (UBA-like)	GO:0005515 (protein binding)
Niben101Scf05969g00013.1	sp|Q6Z2G9|TLP5_ORYSJ	***-	Tubby-like F-box protein 5	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf01642g03014.1	ref|XP_002520680.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF41642.1| conserved hypothetical protein [Ricinus communis]	IPR013730 (rRNA processing)	
Niben101Scf03944g04010.1	sp|Q9CAY3|GPAT5_ARATH	*-*-	Glycerol-3-phosphate acyltransferase 5		
Niben101Scf00773g14024.1	AT5G05470.1	****	eukaryotic translation initiation factor 2 alpha subunit LENGTH=344	IPR011488 (Translation initiation factor 2, alpha subunit), IPR012340 (Nucleic acid-binding, OB-fold), IPR024054 (Translation initiation factor 2, alpha subunit, middle domain), IPR024055 (Translation initiation factor 2, alpha subunit, C-terminal)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005850 (eukaryotic translation initiation factor 2 complex)
Niben101Scf04764g10018.1			Unknown protein		
Niben101Scf06832g01008.1	sp|P85076|PME_ACTDE	****	Pectinesterase	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf03015g06014.1	sp|P26573|RBS8_NICPL	***-	Ribulose bisphosphate carboxylase small chain 8B, chloroplastic	IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain)	
Niben101Scf12011g01009.1	sp|Q94C60|SPT42_ARATH	****	Transcription elongation factor SPT4 homolog 2	IPR016046 (Transcription initiation Spt4-like), IPR029040 (RNA polymerase subunit RPABC4/transcription elongation factor Spt4)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0032786 (positive regulation of DNA-templated transcription, elongation)
Niben101Scf02364g02003.1	sp|Q9H069|LRC48_HUMAN	*-*-	Leucine-rich repeat-containing protein 48	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00317g06031.1	sp|Q9LVQ0|PME31_ARATH	--*-	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	
Niben101Ctg02807g00002.1	sp|Q9M896|TBL20_ARATH	*-*-	Protein trichome birefringence-like 20	IPR026057 (PC-Esterase)	
Niben101Scf17564g00004.1	ref|XP_003589248.1|	***-	Pheromone receptor-like protein [Medicago truncatula] gb|AES59499.1| DUF1645 family protein [Medicago truncatula]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf02585g00006.1	sp|Q9LVX1|C3H41_ARATH	***-	Zinc finger CCCH domain-containing protein 41	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf03804g09010.1	AT4G08300.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=373	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01326g11037.1	sp|Q9LVQ5|PP432_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00234g02044.1	AT3G21190.1	***-	O-fucosyltransferase family protein LENGTH=422	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf01339g06010.1	sp|Q97BW2|RS14Z_THEVO	--*-	30S ribosomal protein S14 type Z	IPR001209 (Ribosomal protein S14)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01635g00001.1	sp|Q6NZZ9|RBM22_DANRE	*-*-	Pre-mRNA-splicing factor RBM22	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06286g02004.1	AT1G14340.1	***-	RNA-binding (RRM/RBD/RNP motifs) family protein LENGTH=244		
Niben101Scf05939g01012.1	sp|Q84UU9|TPS06_ARATH	*-**	Terpenoid synthase 6	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf04122g06010.1	sp|A2AU72|ARMC3_MOUSE	--*-	Armadillo repeat-containing protein 3	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf07977g03015.1	AT4G35420.1	***-	dihydroflavonol 4-reductase-like1 LENGTH=326	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf02614g00003.1	sp|Q9FJR0|RENT1_ARATH	*-*-	Regulator of nonsense transcripts 1 homolog		
Niben101Scf15106g00004.1	sp|P49211|RL321_ARATH	***-	60S ribosomal protein L32-1	IPR001515 (Ribosomal protein L32e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04294g03007.1	sp|Q31RR1|TATA_SYNE7	--*-	Sec-independent protein translocase protein TatA	IPR003369 (Sec-independent protein translocase protein TatA/B/E)	GO:0008565 (protein transporter activity), GO:0015031 (protein transport)
Niben101Scf09417g01008.1	AT3G12120.1	***-	fatty acid desaturase 2 LENGTH=383	IPR005804 (Fatty acid desaturase, type 1), IPR021863 (Protein of unknown function DUF3474)	GO:0006629 (lipid metabolic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0055114 (oxidation-reduction process)
Niben101Scf13982g00001.1	sp|Q9FND8|PP409_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05955g00001.1	sp|O60306|AQR_HUMAN	***-	Intron-binding protein aquarius	IPR026300 (CWF11 family), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf04557g03012.1	sp|Q54XX1|SRPRB_DICDI	*-*-	Signal recognition particle receptor subunit beta	IPR019009 (Signal recognition particle receptor, beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf13141g02004.1	gb|AES72538.2|	****	RNA-binding protein with multiple splicing protein [Medicago truncatula]	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR024888 (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'')	GO:0000166 (nucleotide binding), GO:0000398 (mRNA splicing, via spliceosome), GO:0017069 (snRNA binding)
Niben101Scf09100g00001.1	sp|P45555|DNAJ_STAAU	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Ctg06906g00002.1	sp|P49825|FTSH_ODOSI	*-**	ATP-dependent zinc metalloprotease FtsH	IPR000642 (Peptidase M41)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis)
Niben101Scf01259g10012.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf07321g00007.1	sp|P30236|HSP41_SOYBN	***-	22.0 kDa class IV heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf05551g02001.1	ref|XP_002511182.1|	***-	nucleic acid binding protein, putative [Ricinus communis] gb|EEF51784.1| nucleic acid binding protein, putative [Ricinus communis]		
Niben101Scf09161g01013.1	gb|KDC21792.1|	****	hydrolase, carbon-nitrogen family [Bordetella bronchiseptica F-1] gb|KDC30602.1| hydrolase, carbon-nitrogen family [Bordetella bronchiseptica F2]	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf00369g21012.1	AT5G27930.1	***-	Protein phosphatase 2C family protein LENGTH=373	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf06654g02001.1			Unknown protein		
Niben101Scf10148g00011.1	AT5G58100.1	***-	unknown protein; INVOLVED IN: pollen exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=945		
Niben101Scf00854g10033.1	ref|NP_817264.1|	*-*-	ORF40s [Pinus koraiensis] gb|AAO74109.1| ORF40s [Pinus koraiensis]		
Niben101Scf11911g00005.1	sp|O23969|SF21_HELAN	***-	Pollen-specific protein SF21	IPR004142 (NDRG), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Ctg13137g00001.1	sp|O65719|HSP7C_ARATH	--*-	Heat shock 70 kDa protein 3	IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf01013g00008.1			Unknown protein		
Niben101Scf03097g02002.1	sp|Q9JLB9|PVRL3_MOUSE	--*-	Nectin-3	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf09929g02009.1	ref|XP_002530764.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF31624.1| conserved hypothetical protein [Ricinus communis]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00661g02003.1	sp|Q5ZJR3|OSTC_CHICK	***-	Oligosaccharyltransferase complex subunit OSTC	IPR021149 (Oligosaccharyl transferase complex, subunit OST3/OST6)	
Niben101Scf37108g00003.1	gb|AAU95277.1|	*-*-	R1 [Solanum tuberosum]	IPR002182 (NB-ARC)	GO:0043531 (ADP binding)
Niben101Scf02316g03001.1	sp|Q9FE67|ERF80_ARATH	*-**	Ethylene-responsive transcription factor 9	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02769g01002.1	AT3G16560.1	***-	Protein phosphatase 2C family protein LENGTH=493	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf04797g00027.1			Unknown protein		
Niben101Scf02074g00052.1	tpg|DAA38079.1|	--*-	TPA: hypothetical protein ZEAMMB73_787989 [Zea mays]		
Niben101Scf02172g02009.1	sp|Q8L608|HPSE2_ARATH	***-	Heparanase-like protein 2	IPR005199 (Glycoside hydrolase, family 79)	GO:0005975 (carbohydrate metabolic process), GO:0016020 (membrane), GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf01373g02003.1	sp|Q7XSK0|BGL18_ORYSJ	*-*-	Beta-glucosidase 18	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08447g01022.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08685g00016.1	sp|Q9HEC9|SEC16_NEUCR	*-**	COPII coat assembly protein sec16	IPR024340 (Sec16, central conserved domain), IPR024880 (COPII coat assembly protein, Sec16)	GO:0048208 (COPII vesicle coating)
Niben101Scf00318g09009.1	sp|Q254S9|TRPF_CHLFF	--*-	N-(5'-phosphoribosyl)anthranilate isomerase	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf06024g01005.1	sp|O04705|GAO1D_WHEAT	***-	Gibberellin 20 oxidase 1-D	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02627g01016.1	sp|A1A5X2|FBXL7_DANRE	--*-	F-box/LRR-repeat protein 7		
Niben101Scf06545g03012.1	sp|Q9CYW4|HDHD3_MOUSE	****	Haloacid dehalogenase-like hydrolase domain-containing protein 3	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf08711g01029.1	sp|P23579|RPOB_EUGGR	--*-	DNA-directed RNA polymerase subunit beta		
Niben101Scf12628g03004.1	AT1G55340.1	*-*-	Protein of unknown function (DUF1639) LENGTH=205	IPR012438 (Protein of unknown function DUF1639)	
Niben101Scf02786g03005.1	sp|Q9LDE4|ERF83_ARATH	--**	Ethylene-responsive transcription factor 7	IPR001471 (AP2/ERF domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf12785g00002.1	sp|Q0A778|NUOD_ALKEH	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05269g03023.1			Unknown protein		
Niben101Scf01177g00002.1	sp|B4GAJ1|LIS1_DROPE	--*-	Lissencephaly-1 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00799g04002.1	emb|CDY40887.1|	***-	BnaCnng09780D [Brassica napus]		
Niben101Scf05731g00010.1	gb|AAU90304.1|	--*-	MuDR family transposase containing protein [Solanum demissum]	IPR018289 (MULE transposase domain)	
Niben101Scf06223g00023.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04283g05001.1	sp|Q9LS23|ALMTD_ARATH	****	Aluminum-activated malate transporter 13	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf03518g00007.1	sp|O81322|LBD31_ARATH	***-	LOB domain-containing protein 31	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf03710g04008.1	sp|O64798|Y1747_ARATH	--*-	Inactive serine/threonine-protein kinase		
Niben101Scf03657g03002.1			Unknown protein		
Niben101Scf07926g07004.1	sp|Q9LDE4|ERF83_ARATH	*-**	Ethylene-responsive transcription factor 7	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01368g00028.1	gb|ACF19787.1|	****	NAC transcription factor [Nicotiana tabacum]	IPR003441 (NAC domain), IPR017926 (Glutamine amidotransferase)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05374g01014.1	sp|Q8TBZ6|TM10A_HUMAN	*-*-	tRNA methyltransferase 10 homolog A	IPR007356 (tRNA (guanine-N1-)-methyltransferase, eukaryotic), IPR016009 (tRNA methyltransferase TRMD/TRM10-type domain)	
Niben101Scf00435g05017.1	sp|Q1RHI5|ODO2_RICBR	*-**	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex	IPR006255 (Dihydrolipoamide succinyltransferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0004149 (dihydrolipoyllysine-residue succinyltransferase activity), GO:0006099 (tricarboxylic acid cycle), GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups), GO:0045252 (oxoglutarate dehydrogenase complex)
Niben101Scf04860g02008.1	sp|Q95KC9|PCYOX_MACFA	*-*-	Prenylcysteine oxidase		
Niben101Scf06757g00004.1	sp|Q7XNX6|SUS7_ORYSJ	****	Sucrose synthase 7	IPR012820 (Sucrose synthase, plant/cyanobacteria)	GO:0005985 (sucrose metabolic process), GO:0009058 (biosynthetic process), GO:0016157 (sucrose synthase activity)
Niben101Scf02474g03021.1	sp|Q74IB5|FPG_LACJO	****	Formamidopyrimidine-DNA glycosylase	IPR010979 (Ribosomal protein S13-like, H2TH), IPR012319 (DNA glycosylase/AP lyase, catalytic domain)	GO:0003676 (nucleic acid binding), GO:0003684 (damaged DNA binding), GO:0003906 (DNA-(apurinic or apyrimidinic site) lyase activity), GO:0006284 (base-excision repair), GO:0006289 (nucleotide-excision repair), GO:0008270 (zinc ion binding), GO:0016799 (hydrolase activity, hydrolyzing N-glycosyl compounds)
Niben101Scf01356g00011.1	sp|Q39238|TSL_ARATH	***-	Serine/threonine-protein kinase TOUSLED		
Niben101Scf01076g02011.1	sp|Q9SHB5|WRK55_ARATH	*-**	WRKY transcription factor 55	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04731g01002.1	sp|Q9SUF1|WTR31_ARATH	***-	WAT1-related protein	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Ctg14691g00001.1	sp|Q9LK58|PP225_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf12307g01006.1	sp|A7NY33|PER4_VITVI	****	Peroxidase 4	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf15962g00030.1	sp|A8M9L3|FEN_CALMQ	*-*-	Flap endonuclease 1	IPR006085 (XPG N-terminal), IPR006086 (XPG-I domain), IPR020045 (5'-3' exonuclease, C-terminal domain), IPR029060 (PIN domain-like)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0004518 (nuclease activity), GO:0006281 (DNA repair)
Niben101Scf01238g00001.1	sp|Q9STF0|LRKS3_ARATH	****	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01155g04008.1	sp|Q7MZ25|SYV_PHOLL	*-**	Valine--tRNA ligase	IPR002303 (Valine-tRNA ligase), IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)	GO:0000166 (nucleotide binding), GO:0002161 (aminoacyl-tRNA editing activity), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004832 (valine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006438 (valyl-tRNA aminoacylation)
Niben101Scf04396g03005.1	sp|Q9BPU3|KIF2_DICDI	*-**	Kinesin-related protein 2	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf03240g01008.1	AT1G66180.1	***-	Eukaryotic aspartyl protease family protein LENGTH=430	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03328g02008.1	ref|XP_007011990.1|	--*-	Cysteine-rich RLK 34, putative isoform 2 [Theobroma cacao] gb|EOY29609.1| Cysteine-rich RLK 34, putative isoform 2 [Theobroma cacao]	IPR017853 (Glycoside hydrolase superfamily)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf11108g03002.1	emb|CDY65902.1|	*-*-	BnaCnng49070D [Brassica napus]	IPR003035 (RWP-RK domain), IPR006706 (Extensin domain)	GO:0005199 (structural constituent of cell wall), GO:0009664 (plant-type cell wall organization)
Niben101Scf15476g01013.1	sp|O75439|MPPB_HUMAN	****	Mitochondrial-processing peptidase subunit beta	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0046872 (metal ion binding)
Niben101Scf01552g05010.1	sp|Q6YW46|EF1G2_ORYSJ	****	Elongation factor 1-gamma 2	IPR001662 (Translation elongation factor EF1B, gamma chain, conserved), IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0003746 (translation elongation factor activity), GO:0005515 (protein binding), GO:0006414 (translational elongation)
Niben101Scf13289g02010.1	AT5G20950.1	*-**	Glycosyl hydrolase family protein LENGTH=624	IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05158g01001.1	ref|XP_002535856.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf13041g02010.1	sp|O15488|GLYG2_HUMAN	*-*-	Glycogenin-2	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf06207g01006.1	gb|ADX62222.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia mexicana]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf03595g19024.1	emb|CDY25348.1|	*-*-	BnaA05g19360D [Brassica napus]		
Niben101Scf01789g03003.1	sp|Q5RBP6|CH3L1_PONAB	****	Chitinase-3-like protein 1	IPR017853 (Glycoside hydrolase superfamily), IPR029070 (Chitinase insertion domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004568 (chitinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process)
Niben101Scf01027g01018.1	sp|Q9ULJ6|ZMIZ1_HUMAN	*-**	Zinc finger MIZ domain-containing protein 1	IPR004181 (Zinc finger, MIZ-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027229 (E3 SUMO protein ligase)	GO:0008270 (zinc ion binding), GO:0019789 (SUMO transferase activity)
Niben101Scf03202g12001.1	sp|Q9LV01|ETOL2_ARATH	***-	ETO1-like protein 2	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00556g00005.1	emb|CDY13349.1|	***-	BnaC06g14080D [Brassica napus]		
Niben101Scf00597g08020.1	gb|AAS93776.1|	--*-	AT21482p [Drosophila melanogaster]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf06890g00008.1	AT5G19760.1	***-	Mitochondrial substrate carrier family protein LENGTH=298	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf03948g02007.1	AT2G30690.1	*-*-	Protein of unknown function, DUF593 LENGTH=760	IPR007656 (Zein-binding domain)	
Niben101Scf00831g02022.1	AT1G03080.1	*-*-	kinase interacting (KIP1-like) family protein LENGTH=1733	IPR011684 (KIP1-like)	
Niben101Scf03883g05015.1	AT3G45630.1	*-*-	RNA binding (RRM/RBD/RNP motifs) family protein LENGTH=989		
Niben101Scf02145g10016.1	sp|Q9SC80|DHYS_TOBAC	***-	Deoxyhypusine synthase	IPR002773 (Deoxyhypusine synthase), IPR029035 (DHS-like NAD/FAD-binding domain)	GO:0008612 (peptidyl-lysine modification to peptidyl-hypusine)
Niben101Scf09011g01005.1	sp|C5BDY7|MDTK_EDWI9	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf19295g00013.1	sp|Q8S8Y1|RPOC2_ATRBE	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf09530g01011.1	AT1G76010.1	*-**	Alba DNA/RNA-binding protein LENGTH=350	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Scf03214g01020.1	sp|P52578|IFRH_SOLTU	***-	Isoflavone reductase homolog	IPR016040 (NAD(P)-binding domain)	
Niben101Scf02486g03012.1	sp|Q4P1V1|FEN1_USTMA	***-	Flap endonuclease 1	IPR002421 (5'-3' exonuclease, N-terminal), IPR006085 (XPG N-terminal), IPR006086 (XPG-I domain), IPR023426 (Flap structure-specific endonuclease), IPR029060 (PIN domain-like)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0004518 (nuclease activity), GO:0006281 (DNA repair), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01409g03002.1	sp|O60656|UD19_HUMAN	*-*-	UDP-glucuronosyltransferase 1-9	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03273g02008.1	sp|P49692|RL7A1_ARATH	***-	60S ribosomal protein L7a-1	IPR018492 (Ribosomal protein L7Ae/L8/Nhp2 family), IPR029064 (50S ribosomal protein L30e-like)	GO:0030529 (ribonucleoprotein complex), GO:0042254 (ribosome biogenesis)
Niben101Scf08621g02001.1	AT5G22510.1	***-	alkaline/neutral invertase LENGTH=617	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf10450g00012.1	sp|C3PLF4|UBIE_RICAE	*-**	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf09570g00030.1	sp|P46297|RS23_FRAAN	***-	40S ribosomal protein S23	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00271g08009.1	sp|Q9SYG9|CCX4_ARATH	***-	Cation/calcium exchanger 4	IPR004837 (Sodium/calcium exchanger membrane region), IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf07042g00007.1	sp|Q9SLD2|DGAT1_ARATH	*-**	Diacylglycerol O-acyltransferase 1	IPR004299 (Membrane bound O-acyl transferase, MBOAT)	GO:0008374 (O-acyltransferase activity)
Niben101Scf01269g04025.1	sp|Q9LJU7|PPA18_ARATH	*-**	Purple acid phosphatase 18	IPR008963 (Purple acid phosphatase-like, N-terminal)	GO:0003993 (acid phosphatase activity), GO:0046872 (metal ion binding)
Niben101Scf00484g03012.1	AT3G13600.1	***-	calmodulin-binding family protein LENGTH=605		
Niben101Scf09906g02026.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11624g00001.1	sp|Q9SSK5|MLP43_ARATH	***-	MLP-like protein 43	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf07748g00017.1	sp|Q8W104|FBL17_ARATH	***-	F-box/LRR-repeat protein 17		
Niben101Scf01283g00012.1	AT1G17280.1	***-	ubiquitin-conjugating enzyme 34 LENGTH=237	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf09458g01011.1	sp|Q9SI37|WRKY1_ARATH	--**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07797g02006.1	sp|Q9LKU8|PP401_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf10032g00002.1	sp|O48957|C99A1_SORBI	***-	Cytochrome P450 CYP99A1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02632g07001.1	AT2G28810.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=340	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf36713g00002.1	sp|Q6L398|PSAA_SACHY	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf21600g00002.1	AT3G51550.1	*-*-	Malectin/receptor-like protein kinase family protein LENGTH=895	IPR024788 (Malectin-like carbohydrate-binding domain)	
Niben101Scf09087g01020.1	sp|P08973|YCF2_SPIOL	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf02011g09010.1	sp|Q46I73|RS6_PROMT	--*-	30S ribosomal protein S6	IPR000529 (Ribosomal protein S6), IPR014717 (Translation elongation factor EF1B/ribosomal protein S6)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf00551g01023.1	sp|A4GGA5|RPOB_PHAVU	*-**	DNA-directed RNA polymerase subunit beta	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf02909g09004.1	gb|AGT97382.1|	***-	EG5651 [Manihot esculenta]		
Niben101Scf01784g08001.1	sp|Q9NV70|EXOC1_HUMAN	***-	Exocyst complex component 1	IPR019160 (Exocyst complex, component 1/SEC3)	
Niben101Scf04950g07020.1			Unknown protein		
Niben101Ctg12814g00002.1	sp|Q6RHR6|DMI1_MEDTR	*-*-	Ion channel DMI1	IPR016040 (NAD(P)-binding domain)	
Niben101Scf00962g04002.1	sp|P93311|RM02_ARATH	*-*-	60S ribosomal protein L2, mitochondrial		
Niben101Scf03141g04015.1	AT1G76270.1	*-*-	O-fucosyltransferase family protein LENGTH=572	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Ctg13927g00002.1	sp|P27491|CB27_TOBAC	*-*-	Chlorophyll a-b binding protein 7, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf01697g23017.1	sp|Q6DN52|CBPL_DICDI	--**	Calcium-binding protein L	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03015g06015.1	sp|P26573|RBS8_NICPL	***-	Ribulose bisphosphate carboxylase small chain 8B, chloroplastic	IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain)	
Niben101Scf01674g00002.1	AT1G20160.1	*-**	Subtilisin-like serine endopeptidase family protein LENGTH=769	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf22708g01007.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07695g01023.1	sp|Q9LIG2|RLK6_ARATH	****	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00317g06030.1	sp|Q9LVQ0|PME31_ARATH	****	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf06769g02002.1	sp|Q6EW56|RPOB_NYMAL	*-**	DNA-directed RNA polymerase subunit beta	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf06123g01019.1	sp|Q8LEJ6|FLA11_ARATH	--*-	Fasciclin-like arabinogalactan protein 11	IPR000782 (FAS1 domain)	
Niben101Scf02370g04001.1			Unknown protein		
Niben101Scf13595g01024.1	emb|CDY29863.1|	***-	BnaA03g48840D [Brassica napus]	IPR007789 (Protein of unknown function DUF688)	
Niben101Scf03341g02006.1	sp|P34727|ARF_AJECA	***-	ADP-ribosylation factor	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf02074g04059.1	ref|XP_002535265.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF27117.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04777g05003.1	AT1G09880.1	*-*-	Rhamnogalacturonate lyase family protein LENGTH=631	IPR010325 (Rhamnogalacturonate lyase)	
Niben101Scf03376g02005.1	ref|WP_010506780.1|	--*-	ubiquinol-cytochrome C reductase [Komagataeibacter europaeus]	IPR015947 (PUA-like domain)	
Niben101Scf06026g01017.1	sp|Q00526|CDK3_HUMAN	*-**	Cyclin-dependent kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02167g00007.1	sp|Q9FF81|VPS36_ARATH	***-	Vacuolar protein sorting-associated protein 36	IPR007286 (EAP30), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR021648 (Vacuolar protein sorting protein 36, GLUE domain)	GO:0032266 (phosphatidylinositol-3-phosphate binding), GO:0043130 (ubiquitin binding)
Niben101Scf02839g02012.1	AT5G53450.1	***-	OBP3-responsive gene 1 LENGTH=670	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07066g04005.1	sp|Q8VC52|RBPS2_MOUSE	*-**	RNA-binding protein with multiple splicing 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01538g04011.1	AT1G55360.1	***-	Protein of Unknown Function (DUF239) LENGTH=422	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf04053g03020.1	sp|Q9XJ60|MAD50_ORYSJ	*-*-	MADS-box transcription factor 50	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf05711g00004.1	sp|Q4I7K4|DED1_GIBZE	****	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf25633g00014.1	sp|Q0WVW7|RQL5_ARATH	*-**	ATP-dependent DNA helicase Q-like 5	IPR004589 (DNA helicase, ATP-dependent, RecQ type), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029491 (Helicase Helix-turn-helix domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0006310 (DNA recombination), GO:0008026 (ATP-dependent helicase activity), GO:0043140 (ATP-dependent 3'-5' DNA helicase activity), GO:0044237 (cellular metabolic process)
Niben101Scf03497g07007.1	sp|Q54GS1|CL16A_DICDI	*-*-	Protein CLEC16A homolog	IPR019155 (Uncharacterised protein family FPL)	
Niben101Scf36042g00007.1	sp|Q8RY67|WAKLO_ARATH	****	Wall-associated receptor kinase-like 14	IPR011009 (Protein kinase-like domain), IPR023413 (Green fluorescent protein-like)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03350g00002.1	sp|Q6YW46|EF1G2_ORYSJ	****	Elongation factor 1-gamma 2	IPR001662 (Translation elongation factor EF1B, gamma chain, conserved), IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0003746 (translation elongation factor activity), GO:0005515 (protein binding), GO:0006414 (translational elongation)
Niben101Scf04610g07010.1	sp|Q8H8N3|TYW1_ORYSJ	***-	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase	IPR007197 (Radical SAM), IPR013785 (Aldolase-type TIM barrel), IPR013917 (tRNA wybutosine-synthesis)	GO:0003824 (catalytic activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf00348g11007.1	dbj|BAB02595.1|	--*-	En/Spm transposon-like protein [Arabidopsis thaliana]		
Niben101Scf00789g00017.1	sp|Q6Z2X6|CAS_ORYSJ	*-*-	Cycloartenol synthase	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	
Niben101Scf00858g00009.1	sp|P40282|H2A_PLAFA	***-	Histone H2A	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf01411g00011.1	sp|Q9STT2|VPS29_ARATH	***-	Vacuolar protein sorting-associated protein 29	IPR000979 (Phosphodiesterase MJ0936/Vps29), IPR029052 (Metallo-dependent phosphatase-like)	
Niben101Scf03867g01009.1	AT5G45030.1	***-	Trypsin family protein LENGTH=607	IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity)
Niben101Scf04235g00019.1	AT2G17410.1	*-**	ARID/BRIGHT DNA-binding domain-containing protein LENGTH=786	IPR001606 (ARID DNA-binding domain), IPR008978 (HSP20-like chaperone)	GO:0003677 (DNA binding)
Niben101Scf02890g00011.1	sp|Q9SFC7|FB135_ARATH	*-*-	F-box protein	IPR017451 (F-box associated interaction domain)	
Niben101Scf01239g03006.1	emb|CDY62323.1|	***-	BnaC04g52310D [Brassica napus]		
Niben101Scf00494g06001.1	AT4G25250.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=199	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00962g02008.1	sp|Q08649|ESA1_YEAST	***-	Histone acetyltransferase ESA1	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01577g01014.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf08355g02003.1	AT4G38040.1	***-	Exostosin family protein LENGTH=425	IPR004263 (Exostosin-like)	
Niben101Ctg06481g00003.1	sp|P16273|PRPX_HORVU	*-*-	Pathogen-related protein		
Niben101Scf07765g01010.1	sp|P60039|RL73_ARATH	***-	60S ribosomal protein L7-3	IPR005998 (Ribosomal protein L7, eukaryotic)	
Niben101Scf01398g00005.1	sp|P04707|ADH2_MAIZE	--*-	Alcohol dehydrogenase 2		
Niben101Scf10940g05003.1	gb|AES87033.2|	*-*-	DUF674 family protein [Medicago truncatula]	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf07790g02015.1	ref|XP_003626920.1|	****	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00998g02003.1	emb|CDX67716.1|	***-	BnaA07g17560D [Brassica napus]		
Niben101Scf04113g17024.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00841g00004.1	sp|Q6NRM7|CHMP3_XENLA	***-	Charged multivesicular body protein 3	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf04549g02005.1	sp|Q4FUE0|RL18_PSYA2	-**-	50S ribosomal protein L18	IPR005484 (Ribosomal protein L18/L5)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10620g00003.1	sp|Q9NPJ3|ACO13_HUMAN	***-	Acyl-coenzyme A thioesterase 13	IPR029069 (HotDog domain)	
Niben101Scf04052g02006.1			Unknown protein		
Niben101Scf00577g10002.1	gb|AAU90304.1|	***-	MuDR family transposase containing protein [Solanum demissum]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf00109g09002.1	sp|Q9Y575|ASB3_HUMAN	--*-	Ankyrin repeat and SOCS box protein 3	IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf02821g14003.1	sp|Q9C7T4|BH096_ARATH	***-	Transcription factor bHLH96	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01870g03002.1	sp|O04722|SUT21_ARATH	****	Sulfate transporter 2.1	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf10287g01021.1	sp|A7SXK3|TMED_NEMVE	***-	Transmembrane emp24 domain-containing protein	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf07488g01010.1	AT4G03420.1	***-	Protein of unknown function (DUF789) LENGTH=310	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf12938g00003.1	gb|KEH35704.1|	*-*-	tapetum determinant protein [Medicago truncatula]		
Niben101Scf00758g06006.1	sp|B0TC35|SYC_HELMI	*-**	Cysteine--tRNA ligase	IPR004493 (Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic), IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)	GO:0000166 (nucleotide binding), GO:0002161 (aminoacyl-tRNA editing activity), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004823 (leucine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006429 (leucyl-tRNA aminoacylation)
Niben101Scf04943g01018.1	sp|Q54BM3|MCFG_DICDI	***-	Mitochondrial substrate carrier family protein G	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf07757g00006.1	AT3G62260.2	****	Protein phosphatase 2C family protein LENGTH=384	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf01537g02004.1	sp|Q8H157|PTR19_ARATH	***-	Protein NRT1/ PTR FAMILY 4.6	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf04271g07008.1	sp|Q6ZMU5|TRI72_HUMAN	--*-	Tripartite motif-containing protein 72	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf09670g00004.1	sp|A4QN59|DPH2_DANRE	****	Diphthamide biosynthesis protein 2	IPR002728 (Diphthamide synthesis, DPH1/DPH2)	GO:0005737 (cytoplasm), GO:0017183 (peptidyl-diphthamide biosynthetic process from peptidyl-histidine)
Niben101Scf02325g03014.1	ref|XP_002524009.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF38377.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00501g01007.1	sp|Q9XHP0|11S2_SESIN	***-	11S globulin seed storage protein 2	IPR006044 (11-S seed storage protein, plant)	GO:0045735 (nutrient reservoir activity)
Niben101Scf05319g05001.1	AT3G06140.1	*-*-	RING/U-box superfamily protein LENGTH=359		
Niben101Scf01917g11015.1	AT5G23280.1	***-	TCP family transcription factor LENGTH=250	IPR005333 (Transcription factor, TCP)	
Niben101Scf05314g00007.1	sp|Q9LUL5|PP229_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00279g11011.1			Unknown protein		
Niben101Scf00542g02014.1	AT5G18030.1	***-	SAUR-like auxin-responsive protein family LENGTH=88	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf12307g01008.1			Unknown protein		
Niben101Scf01377g01003.1			Unknown protein		
Niben101Scf01289g03001.1	ref|XP_002534687.1|	*-*-	NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis] gb|EEF27701.1| NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis]		
Niben101Scf03445g02008.1	sp|Q9SB63|MOS1_ARATH	*-*-	Protein MODIFIER OF SNC1 1	IPR009738 (BAT2, N-terminal)	
Niben101Scf05174g01001.1	sp|P97852|DHB4_RAT	*-*-	Peroxisomal multifunctional enzyme type 2	IPR003033 (SCP2 sterol-binding domain)	
Niben101Scf05134g02002.1			Unknown protein		
Niben101Scf02222g00021.1	ref|WP_008056381.1|	*-**	membrane protein [Arthrospira sp. PCC 8005] emb|CCE20009.1| putative permease (membrane component) [Arthrospira sp. PCC 8005] emb|CDM98553.1| putative permease (membrane component) [Arthrospira sp. PCC 8005]	IPR000620 (EamA domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf06497g00012.1	AT1G67820.1	****	Protein phosphatase 2C family protein LENGTH=445	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf03736g02001.1	gb|AAD25575.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf03886g03004.1	AT3G26935.1	****	DHHC-type zinc finger family protein LENGTH=443	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf19133g00002.1	emb|CDY00905.1|	***-	BnaC05g42950D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf00478g06003.1	sp|Q9FIX2|AIG2L_ARATH	***-	AIG2-like protein	IPR013024 (Butirosin biosynthesis, BtrG-like)	
Niben101Scf05247g00006.1	gb|KEH40671.1|	*-*-	pollen Ole e I family allergen [Medicago truncatula]	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf01145g02005.1	AT4G19110.2	****	Protein kinase superfamily protein LENGTH=464	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10749g01004.1	ref|XP_007040872.1|	--*-	Embryo defective 3006, putative isoform 2 [Theobroma cacao] gb|EOY25373.1| Embryo defective 3006, putative isoform 2 [Theobroma cacao]		
Niben101Scf01110g01007.1	sp|Q93ZB9|FACR3_ARATH	****	Fatty acyl-CoA reductase 3	IPR016040 (NAD(P)-binding domain), IPR026055 (Fatty acyl-CoA reductase)	GO:0080019 (fatty-acyl-CoA reductase (alcohol-forming) activity)
Niben101Scf12103g00013.1	AT3G17510.1	****	CBL-interacting protein kinase 1 LENGTH=444	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03431g00010.1	ref|YP_009045802.1|	***-	orf101b (mitochondrion) [Batis maritima] gb|AIC83405.1| orf101b (mitochondrion) [Batis maritima]		
Niben101Scf00297g00028.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf05582g02009.1	sp|Q86VZ2|WDR5B_HUMAN	*-*-	WD repeat-containing protein 5B	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00560g12013.1	AT2G20430.1	*-*-	ROP-interactive CRIB motif-containing protein 6 LENGTH=212	IPR000095 (CRIB domain)	
Niben101Scf26075g00017.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf01931g11009.1	sp|C3MZB8|RL11_SULIA	***-	50S ribosomal protein L11	IPR000911 (Ribosomal protein L11/L12)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00108g05010.1			Unknown protein		
Niben101Scf05588g13006.1	sp|Q9ZVC9|FRS3_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 3		
Niben101Scf02740g06003.1	sp|O68816|TRPA_STRCO	--*-	Tryptophan synthase alpha chain		
Niben101Scf07741g01021.1			Unknown protein		
Niben101Scf07152g04033.1	gb|KEH39793.1|	*-*-	DUF1997 family protein [Medicago truncatula]	IPR018971 (Protein of unknown function DUF1997)	
Niben101Scf02112g02016.1	gb|ABI34321.1|	--*-	RNase H family protein [Solanum demissum]	IPR012337 (Ribonuclease H-like domain)	
Niben101Scf04044g13016.1	sp|O80443|GDL46_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Ctg12341g00003.1	sp|Q869L3|MDN1_DICDI	*-*-	Midasin	IPR002035 (von Willebrand factor, type A)	
Niben101Scf01319g06003.1	sp|Q8CXD3|DNAJ_OCEIH	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf02469g00016.1			Unknown protein		
Niben101Scf05283g00016.1	AT1G68620.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=336	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf03458g00005.1			Unknown protein		
Niben101Scf06588g02019.1	AT1G11090.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=324	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01832g01020.1	sp|P26882|PPID_BOVIN	*-*-	Peptidyl-prolyl cis-trans isomerase D	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR011990 (Tetratricopeptide-like helical domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0005515 (protein binding), GO:0006457 (protein folding)
Niben101Scf04325g01016.1	sp|C5PBM5|MTNA_COCP7	***-	Methylthioribose-1-phosphate isomerase	IPR000649 (Initiation factor 2B-related), IPR027363 (Methylthioribose-1-phosphate isomerase-like, N-terminal domain)	GO:0044237 (cellular metabolic process), GO:0044249 (cellular biosynthetic process)
Niben101Scf10363g01006.1	sp|Q1IF69|LLDD_PSEE4	*-*-	L-lactate dehydrogenase	IPR012133 (Alpha-hydroxy acid dehydrogenase, FMN-dependent), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03045g09005.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf00854g09041.1			Unknown protein		
Niben101Scf01210g00017.1			Unknown protein		
Niben101Scf01076g01017.1			Unknown protein		
Niben101Scf04724g00011.1			Unknown protein		
Niben101Scf05137g01022.1	sp|Q9LUV1|PMEI2_ARATH	-***	Pectinesterase inhibitor 2	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf07465g00001.1	ref|XP_007017719.1|	*-*-	Cell growth defect factor-2 isoform 1 [Theobroma cacao] gb|EOY14944.1| Cell growth defect factor-2 isoform 1 [Theobroma cacao]		
Niben101Scf05304g02001.1	sp|Q9MBA1|CAO_ARATH	****	Chlorophyllide a oxygenase, chloroplastic	IPR013626 (Pheophorbide a oxygenase), IPR017941 (Rieske [2Fe-2S] iron-sulphur domain)	GO:0005506 (iron ion binding), GO:0010277 (chlorophyllide a oxygenase [overall] activity), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01100g00011.1	ref|NP_063979.1|	--*-	orf315 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] ref|YP_004222308.1| hypothetical protein BevumaM_p073 [Beta vulgaris subsp. maritima] ref|YP_004842113.1| hypothetical protein BemaM_p068 [Beta macrocarpa] dbj|BAA99291.1| orf315 [Beta vulgaris subsp. vulgaris] emb|CBJ17535.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBX24917.1| hypothetical protein [Beta macrocarpa]		
Niben101Scf01702g04011.1	sp|Q9FQ03|XRN3_ARATH	****	5'-3' exoribonuclease 3	IPR027073 (5'-3' exoribonuclease)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity), GO:0004534 (5'-3' exoribonuclease activity), GO:0005634 (nucleus), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008270 (zinc ion binding)
Niben101Scf03368g00003.1	sp|Q9FZ70|FDL1_ARATH	*-*-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf08368g03004.1	emb|CDY01869.1|	***-	BnaC06g29090D [Brassica napus]		
Niben101Scf01557g04009.1	sp|Q9FNA9|PDAT1_ARATH	****	Phospholipid:diacylglycerol acyltransferase 1	IPR003386 (Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0008374 (O-acyltransferase activity)
Niben101Scf09119g01007.1			Unknown protein		
Niben101Scf02759g03005.1	AT5G45560.1	***-	Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein LENGTH=719	IPR009769 (Domain of unknown function DUF1336), IPR011993 (Pleckstrin homology-like domain), IPR023393 (START-like domain)	
Niben101Scf02353g06001.1	AT4G39630.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=233		
Niben101Scf04422g18002.1			Unknown protein		
Niben101Scf23791g00001.1			Unknown protein		
Niben101Scf02837g08007.1	sp|F4HRI2|HEI10_ARATH	***-	E3 ubiquitin-protein ligase CCNB1IP1 homolog		
Niben101Scf01194g00006.1	sp|Q9SJ06|FB115_ARATH	--*-	F-box protein	IPR017451 (F-box associated interaction domain)	
Niben101Scf01822g13004.1	sp|Q39639|PLSB_CUCSA	****	Glycerol-3-phosphate acyltransferase, chloroplastic	IPR016222 (Glycerol-3-phosphate O-acyltransferase, chloroplast)	GO:0004366 (glycerol-3-phosphate O-acyltransferase activity), GO:0006650 (glycerophospholipid metabolic process), GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf00119g03014.1	sp|P41755|DHE2_ACHKL	--*-	NAD-specific glutamate dehydrogenase	IPR019651 (Glutamate dehydrogenase, NAD-specific)	
Niben101Scf04819g03006.1	sp|Q0WN60|PPR48_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf03929g00002.1	gb|ABF97305.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf02772g07005.1	AT1G13340.1	*-*-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=409	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf01701g12002.1	sp|P74038|RSMI_SYNY3	****	Ribosomal RNA small subunit methyltransferase I	IPR000878 (Tetrapyrrole methylase), IPR008189 (rRNA small subunit methyltransferase I)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf02203g03014.1	gb|AES77240.2|	****	GPI-GlcNAc transferase complex, PIG-H component [Medicago truncatula]	IPR019328 (GPI-GlcNAc transferase complex, PIG-H component, conserved domain)	GO:0017176 (phosphatidylinositol N-acetylglucosaminyltransferase activity)
Niben101Scf14323g01021.1	AT4G23840.1	*-*-	Leucine-rich repeat (LRR) family protein LENGTH=597		
Niben101Scf08160g02006.1	AT1G75170.1	*-*-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=296	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf01702g08009.1	dbj|BAB11196.1|	*-*-	mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf02195g04001.1	AT2G23610.1	***-	methyl esterase 3 LENGTH=263	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01497g04008.1	AT3G51390.1	****	DHHC-type zinc finger family protein LENGTH=340	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf06153g03012.1	ref|XP_003866561.1|	****	Ymc1 inner mitochondrial membrane transporter [Candida orthopsilosis Co 90-125] emb|CCG21122.1| Ymc1 inner mitochondrial membrane transporter [Candida orthopsilosis Co 90-125]	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf03739g07009.1	sp|O16102|CHD3_DROME	--**	Chromodomain-helicase-DNA-binding protein 3	IPR000330 (SNF2-related), IPR011990 (Tetratricopeptide-like helical domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf04567g00003.1	sp|Q6IP09|PABPB_XENLA	*-**	Polyadenylate-binding protein 1-B	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf28650g00005.1	emb|CDY21623.1|	*-*-	BnaC09g46690D [Brassica napus]		
Niben101Scf01556g03003.1	emb|CDY50089.1|	***-	BnaC01g32640D [Brassica napus]	IPR021924 (Protein of unknown function DUF3537)	
Niben101Scf07438g02004.1	AT5G35220.1	****	Peptidase M50 family protein LENGTH=548	IPR008915 (Peptidase M50)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00616g02011.1	sp|Q9CAJ9|Y1385_ARATH	***-	BTB/POZ domain-containing protein	IPR000210 (BTB/POZ-like)	GO:0005515 (protein binding)
Niben101Scf02046g01013.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00264g03012.1	AT1G20990.1	***-	Cysteine/Histidine-rich C1 domain family protein LENGTH=319	IPR011424 (C1-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04764g06002.1	sp|Q7Z5Q5|DPOLN_HUMAN	*-**	DNA polymerase nu	IPR001650 (Helicase, C-terminal), IPR002298 (DNA polymerase A), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0005524 (ATP binding), GO:0006260 (DNA replication), GO:0006261 (DNA-dependent DNA replication)
Niben101Scf05378g00020.1	sp|Q5R8K4|ZN207_PONAB	*-*-	Zinc finger protein 207	IPR003656 (Zinc finger, BED-type), IPR015880 (Zinc finger, C2H2-like)	GO:0003677 (DNA binding), GO:0046872 (metal ion binding)
Niben101Scf02125g01004.1	sp|Q84WW6|ASHH1_ARATH	*-*-	Histone-lysine N-methyltransferase ASHH1		
Niben101Scf01435g00001.1	ref|XP_002519598.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF42784.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05140g02012.1	sp|A4PBL4|RAD54_ORYSJ	*-**	DNA repair and recombination protein RAD54	IPR000330 (SNF2-related), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf02192g01017.1	sp|Q6L398|PSAA_SACHY	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf01635g03001.1	ref|XP_002534514.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF27871.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05767g03018.1			Unknown protein		
Niben101Scf00017g04008.1	AT5G08710.1	*-*-	Regulator of chromosome condensation (RCC1) family protein LENGTH=434	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf00961g01015.1	ref|XP_003599472.1|	--*-	Defensin-like protein [Medicago truncatula]		
Niben101Scf03809g02013.1	sp|Q91YM2|RHG35_MOUSE	*-*-	Rho GTPase-activating protein 35	IPR008936 (Rho GTPase activation protein)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf06589g00008.1	gb|AAS86297.1|	***-	myc-like anthocyanin regulatory protein [Cornus unalaschkensis]	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf06477g00001.1	sp|Q80T74|KLH29_MOUSE	*-*-	Kelch-like protein 29	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf04558g02037.1	gb|KAK48983.1|	--*-	aldo/keto reductase [Burkholderia sp. MP-1]	IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf02111g14011.1	emb|CAA05276.1|	*-*-	Hcr9-9E [Solanum pimpinellifolium]		
Niben101Scf00465g07002.1	AT1G13470.1	***-	Protein of unknown function (DUF1262) LENGTH=379	IPR010683 (Protein of unknown function DUF1262)	
Niben101Scf04230g02003.1	ref|XP_002521949.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF40353.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00646g07016.1	AT1G09380.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=374	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf07725g01003.1	sp|Q84LF0|5EAS2_NICAT	*-**	5-epi-aristolochene synthase 2	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf04193g06007.1	sp|A2YQU8|SLU7_ORYSI	***-	Pre-mRNA-splicing factor SLU7	IPR021715 (Pre-mRNA splicing Prp18-interacting factor)	
Niben101Scf02562g02012.1	AT3G11340.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=447	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04554g07027.1	AT1G50740.1	***-	Transmembrane proteins 14C LENGTH=119	IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane)
Niben101Scf03710g03004.1	sp|Q96E22|NGBR_HUMAN	***-	Dehydrodolichyl diphosphate syntase complex subunit NUS1	IPR001441 (Decaprenyl diphosphate synthase-like)	GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf01005g06011.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf04674g04003.1	sp|Q8S9G8|SPL7_ARATH	*-*-	Squamosa promoter-binding-like protein 7		
Niben101Scf06545g00010.1	sp|O59306|RS4_PYRHO	****	30S ribosomal protein S4	IPR001912 (Ribosomal protein S4/S9, N-terminal), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0006412 (translation), GO:0015935 (small ribosomal subunit), GO:0019843 (rRNA binding)
Niben101Scf17858g00003.1	AT5G42670.1	*-*-	Agenet domain-containing protein LENGTH=294	IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf30958g00012.1	AT3G24450.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=140	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf07539g00019.1	AT3G09570.1	***-	Lung seven transmembrane receptor family protein LENGTH=439	IPR009637 (Transmembrane receptor, eukaryota)	GO:0016021 (integral component of membrane)
Niben101Scf07170g01008.1	sp|Q08069|RS8_MAIZE	***-	40S ribosomal protein S8	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04216g07018.1	AT1G66220.1	*-*-	Subtilase family protein LENGTH=753	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf00288g06005.1	sp|Q6QI44|NAA25_RAT	--*-	N-alpha-acetyltransferase 25, NatB auxiliary subunit	IPR019183 (N-acetyltransferase B complex, non-catalytic subunit)	
Niben101Scf05800g02021.1			Unknown protein		
Niben101Scf01739g03006.1	sp|Q9LYN8|EXS_ARATH	***-	Leucine-rich repeat receptor protein kinase EXS	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf26023g00004.1	sp|O24606|EIN3_ARATH	*-*-	Protein ETHYLENE INSENSITIVE 3		
Niben101Scf08160g01011.1			Unknown protein		
Niben101Scf05670g00003.1	sp|B7FKW7|CYNS_MEDTR	****	Cyanate hydratase	IPR008076 (Cyanate hydratase)	GO:0003677 (DNA binding), GO:0008824 (cyanate hydratase activity), GO:0009439 (cyanate metabolic process)
Niben101Scf03147g07006.1	sp|Q971C9|RL7A_SULTO	***-	50S ribosomal protein L7Ae	IPR018492 (Ribosomal protein L7Ae/L8/Nhp2 family), IPR029064 (50S ribosomal protein L30e-like)	GO:0003723 (RNA binding), GO:0005730 (nucleolus), GO:0030529 (ribonucleoprotein complex), GO:0042254 (ribosome biogenesis)
Niben101Scf33374g00003.1	sp|Q8LF21|DRP1C_ARATH	*-*-	Dynamin-related protein 1C	IPR000375 (Dynamin central domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf01052g01005.1	sp|P82787|DEF19_ARATH	-**-	Defensin-like protein 19	IPR003614 (Knottin, scorpion toxin-like)	GO:0006952 (defense response)
Niben101Scf06883g01009.1	sp|Q8LGG8|USPAL_ARATH	-***	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf06065g02015.1	sp|Q9SNC6|PUB13_ARATH	***-	U-box domain-containing protein 13	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf00490g01043.1	AT4G11920.1	***-	cell cycle switch protein 52 A2 LENGTH=475	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02798g01066.1			Unknown protein		
Niben101Scf05110g00012.1	ref|XP_003589726.1|	*-**	Auxin-induced protein 5NG4 [Medicago truncatula] gb|AES59977.1| nodulin MtN21/EamA-like transporter family protein [Medicago truncatula]	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf06205g02012.1	sp|O23184|CML19_ARATH	****	Calcium-binding protein CML19	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00163g06003.1	sp|Q9SZL8|FRS5_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 5	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf01100g06020.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Ctg13403g00001.1	emb|CDY26511.1|	***-	BnaC09g41570D [Brassica napus]		
Niben101Scf08478g03025.1	sp|Q8R3D1|TBC13_MOUSE	*-*-	TBC1 domain family member 13	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf05245g00004.1	ref|XP_002527900.1|	-***	enzyme inhibitor, putative [Ricinus communis] gb|EEF34457.1| enzyme inhibitor, putative [Ricinus communis]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf01695g03009.1			Unknown protein		
Niben101Scf01176g01009.1			Unknown protein		
Niben101Scf00282g01003.1	AT4G25440.1	***-	zinc finger WD40 repeat protein 1 LENGTH=430	IPR000571 (Zinc finger, CCCH-type), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf01119g01007.1	sp|Q58DW6|RAB25_BOVIN	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf03371g02006.1	sp|Q6P2B1|TNPO3_MOUSE	*-*-	Transportin-3	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01442g01009.1	sp|P23922|HBP1A_WHEAT	--**	Transcription factor HBP-1a	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00350g05001.1			Unknown protein		
Niben101Scf03863g01004.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Ctg08283g00001.1	emb|CDY63594.1|	*-*-	BnaUnng00820D [Brassica napus] emb|CDY19656.1| BnaC09g29120D [Brassica napus] emb|CDX95222.1| BnaC09g16480D [Brassica napus] emb|CDX71647.1| BnaC09g26880D [Brassica napus]		
Niben101Scf00578g05006.1	sp|A8GCS6|NQOR_SERP5	***-	NAD(P)H dehydrogenase (quinone)	IPR010089 (Flavoprotein WrbA), IPR029039 (Flavoprotein-like)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0045892 (negative regulation of transcription, DNA-templated)
Niben101Scf01188g11001.1	AT1G50720.1	***-	Stigma-specific Stig1 family protein LENGTH=154	IPR006969 (Stigma-specific protein Stig1)	
Niben101Scf03661g01005.1			Unknown protein		
Niben101Scf02422g02017.1	sp|Q9S7T8|SPZX_ARATH	*-*-	Serpin-ZX	IPR000215 (Serpin family), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf00381g03009.1	AT1G62310.1	*-*-	transcription factor jumonji (jmjC) domain-containing protein LENGTH=883	IPR003347 (JmjC domain)	
Niben101Scf07229g00011.1	sp|Q5JVF3|PCID2_HUMAN	***-	PCI domain-containing protein 2	IPR000717 (Proteasome component (PCI) domain), IPR013143 (PCI/PINT associated module)	GO:0005515 (protein binding)
Niben101Scf04122g06013.1	gb|KEH36513.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00430g01013.1	sp|P80497|ATPY_SOLTU	*-*-	ATP synthase 6 kDa subunit, mitochondrial		
Niben101Scf09000g00002.1	sp|Q8LGG8|USPAL_ARATH	****	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf00887g03009.1	sp|Q4VA36|CCD84_MOUSE	*-*-	Coiled-coil domain-containing protein 84	IPR028015 (Coiled-coil domain-containing protein 84)	
Niben101Scf02700g00006.1	sp|Q7F8R0|C3H14_ORYSJ	***-	Zinc finger CCCH domain-containing protein 14	IPR000571 (Zinc finger, CCCH-type), IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0046872 (metal ion binding)
Niben101Scf06187g01033.1	sp|P13703|HMGCL_PSEMV	*-*-	Hydroxymethylglutaryl-CoA lyase	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf00482g03002.1	AT2G37420.1	****	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf39409g00004.1	gb|AAQ05799.1|AF478458_1	*-**	DNA binding protein Rav [Capsicum annuum]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf00370g02003.1	sp|Q53YF3|SPC3B_ARATH	****	Signal peptidase complex subunit 3B	IPR007653 (Signal peptidase 22kDa subunit)	GO:0005787 (signal peptidase complex), GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf02537g19002.1	dbj|BAD66730.1|	-**-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf00624g00001.1	sp|Q07502|DEF_SOYBN	***-	Defensin-like protein	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf00440g01018.1	sp|Q07346|DCE_PETHY	*-*-	Glutamate decarboxylase	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02968g01005.1	sp|Q9LVE0|PTR33_ARATH	***-	Protein NRT1/ PTR FAMILY 6.4	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01164g00012.1	sp|P07135|RR7_SOYBN	****	30S ribosomal protein S7, chloroplastic	IPR000235 (Ribosomal protein S5/S7), IPR023798 (Ribosomal protein S7 domain)	GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf01358g01002.1	emb|CDX72755.1|	***-	BnaC06g32030D [Brassica napus]		
Niben101Scf00259g00013.1	sp|P49985|RECA_RUMA7	*-*-	Protein RecA	IPR013765 (DNA recombination and repair protein RecA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003697 (single-stranded DNA binding), GO:0005524 (ATP binding), GO:0006281 (DNA repair), GO:0009432 (SOS response)
Niben101Scf00960g15006.1	AT1G36160.1	****	acetyl-CoA carboxylase 1 LENGTH=2254	IPR000089 (Biotin/lipoyl attachment), IPR011761 (ATP-grasp fold), IPR011764 (Biotin carboxylation domain), IPR013537 (Acetyl-CoA carboxylase, central domain), IPR016185 (Pre-ATP-grasp domain), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0003989 (acetyl-CoA carboxylase activity), GO:0004075 (biotin carboxylase activity), GO:0005524 (ATP binding), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016874 (ligase activity), GO:0046872 (metal ion binding)
Niben101Scf05351g02005.1	AT4G34860.1	*-*-	Plant neutral invertase family protein LENGTH=571	IPR024746 (Glycosyl hydrolase family 100)	GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf02601g02007.1	sp|P93263|METE_MESCR	--*-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase		
Niben101Scf03757g02001.1	sp|Q66GR0|FLA17_ARATH	***-	Fasciclin-like arabinogalactan protein 17	IPR000782 (FAS1 domain)	
Niben101Scf04878g00014.1			Unknown protein		
Niben101Scf29815g00002.1	AT3G21690.1	*-*-	MATE efflux family protein LENGTH=506	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf06583g01005.1	ref|WP_008161223.1|	--*-	PAS/PAC sensor protein, partial [Natronorubrum sulfidifaciens] gb|ELY46795.1| PAS/PAC sensor protein, partial [Natronorubrum sulfidifaciens JCM 14089]		
Niben101Scf01573g01007.1			Unknown protein		
Niben101Scf11110g00023.1	sp|P16273|PRPX_HORVU	***-	Pathogen-related protein		
Niben101Scf14102g01014.1	gb|ABG37650.2|	*-*-	CCHC-type integrase [Populus trichocarpa]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf03710g03005.1	sp|Q76NT9|ACCO1_DICDI	***-	1-aminocyclopropane-1-carboxylate oxidase	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf03250g00003.1	AT4G25500.1	***-	arginine/serine-rich splicing factor 35 LENGTH=350	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR029537 (Arginine/serine-rich-splicing factor RSP40/RSP41)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf21530g00001.1	AT3G29180.1	***-	Protein of unknown function (DUF1336) LENGTH=513	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf05543g01003.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00552g00005.1	sp|Q9FME8|OPT4_ARATH	***-	Oligopeptide transporter 4	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf02221g04005.1	sp|Q9PTJ6|CTDSL_CHICK	--*-	CTD small phosphatase-like protein	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding)
Niben101Scf01362g04002.1	gb|KEH24987.1|	*-**	2-aminoethanethiol dioxygenase-like protein [Medicago truncatula]	IPR012864 (Cysteamine dioxygenase), IPR014710 (RmlC-like jelly roll fold)	GO:0047800 (cysteamine dioxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09260g00005.1	AT2G48080.1	*-*-	oxidoreductase, 2OG-Fe(II) oxygenase family protein LENGTH=438	IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	
Niben101Scf08329g00002.1	sp|Q942D4|BURP3_ORYSJ	*-*-	BURP domain-containing protein 3	IPR004873 (BURP domain)	
Niben101Scf01905g01001.1	sp|Q03194|PMA4_NICPL	****	Plasma membrane ATPase 4	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane)
Niben101Scf04011g01003.1			Unknown protein		
Niben101Scf11443g01005.1	sp|Q6DIV4|RBM38_XENTR	*-**	RNA-binding protein 38	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06603g03002.1	sp|Q9SHB5|WRK55_ARATH	*-**	WRKY transcription factor 55	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00067g00006.1	sp|Q92F42|RADA_LISIN	****	DNA repair protein RadA homolog	IPR004504 (DNA repair protein RadA), IPR020588 (DNA recombination and repair protein RecA-like, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003684 (damaged DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0006281 (DNA repair), GO:0008094 (DNA-dependent ATPase activity)
Niben101Scf04197g01021.1	sp|Q2RNZ9|TRUA_RHORT	*-**	tRNA pseudouridine synthase A	IPR001406 (Pseudouridine synthase I, TruA), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf05378g01015.1	sp|Q5PQQ4|PIGC_RAT	--**	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C	IPR009450 (Phosphatidylinositol N-acetylglucosaminyltransferase subunit C)	GO:0006506 (GPI anchor biosynthetic process), GO:0016021 (integral component of membrane), GO:0017176 (phosphatidylinositol N-acetylglucosaminyltransferase activity)
Niben101Scf01027g01015.1	gb|KEH21133.1|	****	heavy metal transport/detoxification superfamily protein [Medicago truncatula]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf07147g02014.1	gb|KEH31889.1|	*-*-	aminoacyl-tRNA synthetase [Medicago truncatula]		
Niben101Scf04007g07006.1	AT1G45201.1	***-	triacylglycerol lipase-like 1 LENGTH=479	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf06599g00003.1			Unknown protein		
Niben101Scf03653g01008.1	sp|Q55BF2|NMD3_DICDI	*-*-	60S ribosomal export protein NMD3	IPR007064 (NMD3)	
Niben101Scf03944g04013.1			Unknown protein		
Niben101Scf02217g01002.1	sp|B5YEC9|GATC_DICT6	***-	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	IPR003837 (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit)	GO:0006450 (regulation of translational fidelity)
Niben101Scf19171g01029.1	sp|Q15139|KPCD1_HUMAN	*-**	Serine/threonine-protein kinase D1	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00616g02010.1	sp|Q8L1Z7|GPMA_BARHE	***-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	IPR001345 (Phosphoglycerate/bisphosphoglycerate mutase, active site), IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf32862g01009.1	AT5G55580.1	****	Mitochondrial transcription termination factor family protein LENGTH=496	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03224g09008.1	sp|P49972|SR542_SOLLC	****	Signal recognition particle 54 kDa protein 2	IPR000897 (Signal recognition particle, SRP54 subunit, GTPase domain), IPR004125 (Signal recognition particle, SRP54 subunit, M-domain), IPR013822 (Signal recognition particle, SRP54 subunit, helical bundle), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0048500 (signal recognition particle)
Niben101Scf04117g10023.1	sp|Q9SJ40|VPS11_ARATH	***-	Vacuolar protein-sorting-associated protein 11 homolog	IPR011990 (Tetratricopeptide-like helical domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR016528 (Vacuolar protein sorting-associated protein 11), IPR024763 (Vacuolar protein sorting protein 11, C-terminal)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0008270 (zinc ion binding), GO:0016192 (vesicle-mediated transport)
Niben101Scf02237g03004.1	sp|Q2H080|RM04_CHAGB	*-**	54S ribosomal protein L4, mitochondrial	IPR001854 (Ribosomal protein L29), IPR010729 (Ribosomal protein L47, mitochondrial)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005761 (mitochondrial ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Ctg15985g00004.1	sp|Q7KU24|CHD1_DROME	*-**	Chromodomain-helicase-DNA-binding protein 1	IPR000330 (SNF2-related), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf04306g01006.1	sp|Q9C8H1|AB11C_ARATH	***-	ABC transporter C family member 11	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf03839g04017.1	gb|AFX95943.1|	***-	green-ripe like protein 1 [Solanum melongena]	IPR008496 (Protein of unknown function DUF778)	
Niben101Scf02105g02008.1	AT4G15053.1	***-	Protein of Unknown Function (DUF239) LENGTH=403	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf00595g08046.1	emb|CAE05840.2|	--*-	OSJNBa0091C07.2 [Oryza sativa Japonica Group]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf03964g04029.1	sp|Q3V384|LACE1_MOUSE	***-	Lactation elevated protein 1	IPR005654 (ATPase, AFG1-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00527g05007.1	sp|Q9P0L0|VAPA_HUMAN	*-**	Vesicle-associated membrane protein-associated protein A	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf05615g02001.1	sp|P35687|RS21_ORYSJ	*-*-	40S ribosomal protein S21	IPR001931 (Ribosomal protein S21e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01977g01006.1	sp|A5DWE2|H31_LODEL	***-	Histone H3.1/H3.2	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf05036g01011.1	sp|A4VCM0|NAC45_ARATH	***-	NAC domain-containing protein 45		
Niben101Scf11805g02005.1	AT1G62975.1	****	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=259	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf11337g00009.1	sp|Q9M5P8|SNAA_SOLTU	***-	Alpha-soluble NSF attachment protein	IPR000744 (NSF attachment protein), IPR001252 (Malate dehydrogenase, active site)	GO:0005515 (protein binding), GO:0006108 (malate metabolic process), GO:0006886 (intracellular protein transport), GO:0016615 (malate dehydrogenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03015g03010.1	sp|Q6ZKC0|14333_ORYSJ	***-	14-3-3-like protein GF14-C	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf00893g01012.1	ref|XP_002524703.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF37722.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04496g00015.1	sp|Q556Z3|TPC10_DICDI	*-*-	Trafficking protein particle complex subunit 10	IPR011990 (Tetratricopeptide-like helical domain), IPR021773 (Foie gras liver health family 1), IPR022233 (TRAPP II complex, TRAPPC10)	GO:0005515 (protein binding)
Niben101Scf13540g01002.1			Unknown protein		
Niben101Scf08194g02006.1	sp|Q8RBI7|DAPH_CALS4	***-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	IPR011004 (Trimeric LpxA-like)	
Niben101Scf08941g00004.1	sp|P23433|E13D_TOBAC	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04436g13009.1	sp|Q67ZB3|FRL3_ARATH	***-	FRIGIDA-like protein 3	IPR012474 (Frigida-like)	
Niben101Scf07182g04009.1	sp|Q969H6|POP5_HUMAN	-***	Ribonuclease P/MRP protein subunit POP5	IPR002759 (Ribonuclease P/MRP protein subunit)	GO:0004540 (ribonuclease activity), GO:0008033 (tRNA processing)
Niben101Scf11468g00007.1	emb|CDY23881.1|	***-	BnaC04g01560D [Brassica napus]		
Niben101Scf03497g12008.1	sp|Q7JK24|B3GT1_GORGO	-***	Beta-1,3-galactosyltransferase 1	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf03374g08018.1	AT1G63470.1	*-*-	AT hook motif DNA-binding family protein LENGTH=378	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf01694g09005.1	sp|P93194|RPK1_IPONI	****	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf18175g00002.1	sp|Q9BXM0|PRAX_HUMAN	*-*-	Periaxin		
Niben101Scf05373g02003.1	AT2G39570.1	***-	ACT domain-containing protein LENGTH=411	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf07782g00001.1	sp|Q04189|TAP1_ANTMA	-**-	Protein TAP1		
Niben101Scf03502g01014.1	ref|XP_002519145.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF43356.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf01437g03008.1	sp|Q6ZIK5|GRF4_ORYSJ	***-	Growth-regulating factor 4	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf04396g03008.1	sp|Q8GWQ6|Y6344_ARATH	*-*-	UPF0235 protein	IPR003746 (Protein of unknown function DUF167)	
Niben101Scf00103g00019.1	AT1G29690.1	***-	MAC/Perforin domain-containing protein LENGTH=561	IPR020864 (Membrane attack complex component/perforin (MACPF) domain)	
Niben101Scf03907g01018.1	sp|Q9SAR0|1A16_ARATH	***-	1-aminocyclopropane-1-carboxylate synthase 6	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00315g01011.1	sp|Q8EUM4|DNAJ_MYCPE	*-*-	Chaperone protein DnaJ	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain), IPR001623 (DnaJ domain), IPR008971 (HSP40/DnaJ peptide-binding)	GO:0006457 (protein folding), GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf20493g00009.1	sp|Q9FJD5|LAC17_ARATH	*-*-	Laccase-17	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding)
Niben101Scf04032g00003.1	sp|C7Z638|MTNA_NECH7	***-	Methylthioribose-1-phosphate isomerase	IPR000649 (Initiation factor 2B-related), IPR027363 (Methylthioribose-1-phosphate isomerase-like, N-terminal domain)	GO:0044237 (cellular metabolic process)
Niben101Scf10920g01030.1	emb|CDX70091.1|	***-	BnaA10g24400D [Brassica napus]	IPR007656 (Zein-binding domain)	
Niben101Scf22015g02038.1	gb|EEZ33517.1|	--*-	conserved hypothetical protein [Brucella sp. 83/13]		
Niben101Scf11009g00029.1	sp|Q9LZB2|GDL74_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf12994g03003.1	gb|AAB24078.1|	--**	lipid body membrane protein [Daucus carota]	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf01111g04003.1	sp|Q6P2Q9|PRP8_HUMAN	*-**	Pre-mRNA-processing-splicing factor 8	IPR012337 (Ribonuclease H-like domain), IPR012591 (PRO8NT domain), IPR012592 (PROCN domain), IPR019580 (Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding), IPR019581 (Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding), IPR019582 (RNA recognition motif, spliceosomal PrP8), IPR027652 (Pre-mRNA-processing-splicing factor 8)	GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005681 (spliceosomal complex), GO:0017070 (U6 snRNA binding), GO:0030623 (U5 snRNA binding)
Niben101Scf06739g04004.1			Unknown protein		
Niben101Scf05310g02004.1	emb|CDX80466.1|	*-*-	BnaC07g29780D [Brassica napus]		
Niben101Scf02208g00003.1	gb|KEH39432.1|	***-	GTP-binding protein Obg/CgtA protein [Medicago truncatula]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf00713g03003.1	sp|Q17QU7|DHR13_BOVIN	****	Dehydrogenase/reductase SDR family member 13	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf05692g06003.1	sp|Q9SXS8|ERF3_TOBAC	*-**	Ethylene-responsive transcription factor 3	IPR001471 (AP2/ERF domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02132g00026.1	ref|NP_001043425.1|	*-*-	product [Oryza sativa Japonica Group]	IPR009500 (Protein of unknown function DUF1118)	
Niben101Scf03006g10002.1	sp|Q01664|TFAP4_HUMAN	--*-	Transcription factor AP-4	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf04998g01008.1	emb|CDY21094.1|	***-	BnaA08g24310D [Brassica napus]		
Niben101Scf09442g01008.1	sp|Q42993|CHI1_ORYSJ	****	Chitinase 1	IPR016283 (Glycoside hydrolase, family 19), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf00083g00009.1	AT4G04720.1	****	calcium-dependent protein kinase 21 LENGTH=531	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07645g05003.1	sp|Q9C857|GDL16_ARATH	--*-	GDSL esterase/lipase		
Niben101Scf37352g00001.1	sp|Q8TWS2|GATB_METKA	--*-	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B		
Niben101Scf02222g00020.1	emb|CAD41196.2|	*-*-	OSJNBa0074L08.7 [Oryza sativa Japonica Group]		
Niben101Scf05278g05001.1	sp|P93028|UBE11_ARATH	*-*-	Ubiquitin-activating enzyme E1 1	IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity)
Niben101Scf08088g04010.1	AT1G29370.1	***-	Kinase-related protein of unknown function (DUF1296) LENGTH=831	IPR009060 (UBA-like), IPR009719 (Protein of unknown function DUF1296, plant)	GO:0005515 (protein binding)
Niben101Scf02220g05009.1	sp|Q8P6A0|CLPB_XANCP	***-	Chaperone protein ClpB	IPR001270 (ClpA/B family), IPR004176 (Clp, N-terminal), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028299 (ClpA/B, conserved site 2)	GO:0005524 (ATP binding), GO:0019538 (protein metabolic process)
Niben101Scf03418g00001.1	emb|CDX69913.1|	***-	BnaA10g22620D [Brassica napus]	IPR019379 (Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit)	
Niben101Scf03786g03015.1	sp|P0A114|CLCD_PSEPU	***-	Carboxymethylenebutenolidase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf07939g00001.1	AT2G42850.1	***-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04099g03011.1	sp|O61125|STK4_DICDI	*-**	Serine/threonine-protein kinase 4 homolog A	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05014g00018.1	AT1G74830.1	***-	Protein of unknown function, DUF593 LENGTH=542	IPR007656 (Zein-binding domain)	
Niben101Scf00539g03013.1	AT1G76010.1	*-**	Alba DNA/RNA-binding protein LENGTH=350	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Scf01018g02004.1	sp|Q9LIG2|RLK6_ARATH	****	Receptor-like protein kinase	IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05726g00013.1	AT2G39510.1	*-**	nodulin MtN21 /EamA-like transporter family protein LENGTH=374	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01740g07011.1	AT5G53550.1	***-	YELLOW STRIPE like 3 LENGTH=675	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf01356g00010.1	sp|Q924X7|STK33_MOUSE	****	Serine/threonine-protein kinase 33	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03735g01024.1	sp|Q9D994|WDR38_MOUSE	*-*-	WD repeat-containing protein 38	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02264g06032.1	AT1G65800.1	*-**	receptor kinase 2 LENGTH=847	IPR000742 (Epidermal growth factor-like domain), IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf20506g01006.1	sp|Q21NX6|GCSH_SACD2	***-	Glycine cleavage system H protein	IPR002930 (Glycine cleavage system H-protein)	
Niben101Scf04820g03002.1	gb|KEH28740.1|	****	sulfate transporter-like protein [Medicago truncatula]	IPR011547 (Sulphate transporter)	GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf01339g06013.1	ref|NP_193381.1|	*-**	in [Arabidopsis thaliana] gb|AAO42160.1| putative membrane transporter [Arabidopsis thaliana] gb|AAO64127.1| putative membrane transporter [Arabidopsis thaliana] emb|CAJ00306.1| inositol transporter 4 [Arabidopsis thaliana] gb|AEE83759.1| inositol transporter 4 [Arabidopsis thaliana]	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00234g02043.1	ref|WP_017206512.1|	***-	pyridoxamine 5'-phosphate oxidase [Mycobacterium abscessus]	IPR012349 (FMN-binding split barrel)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05061g02001.1			Unknown protein		
Niben101Scf00109g00010.1	sp|Q56X05|PPR15_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01020g02008.1	sp|O13813|TOM22_SCHPO	--**	Mitochondrial import receptor subunit tom22	IPR005683 (Mitochondrial outer membrane translocase complex, subunit Tom22)	GO:0005741 (mitochondrial outer membrane), GO:0006886 (intracellular protein transport)
Niben101Scf07364g00001.1			Unknown protein		
Niben101Scf02479g02017.1	sp|A8AMG4|F16PA_CITK8	*-**	Fructose-1,6-bisphosphatase class 1	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf10248g01017.1	sp|Q9SIM9|MAX2_ARATH	***-	F-box protein MAX2	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf09150g02011.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09517g01010.1			Unknown protein		
Niben101Scf03329g02002.1	ref|WP_017328405.1|	***-	glycosyl transferase [Synechococcus sp. PCC 7336]	IPR028098 (Glycosyltransferase subfamily 4, N-terminal domain)	
Niben101Scf11911g00004.1			Unknown protein		
Niben101Scf04505g02002.1	AT1G14770.1	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=429	IPR009057 (Homeodomain-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01970g07024.1	sp|Q8W3M6|UBCP_ARATH	****	Ubiquitin-like domain-containing CTD phosphatase	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0004721 (phosphoprotein phosphatase activity), GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf17338g00001.1			Unknown protein		
Niben101Scf10002g00002.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01036g06005.1	gb|KEH43869.1|	***-	late embryogenesis abundant D-like protein [Medicago truncatula]	IPR007011 (Seed maturation protein)	
Niben101Scf10989g00004.1	sp|P92942|CLCB_ARATH	*-**	Chloride channel protein CLC-b	IPR000644 (CBS domain), IPR014743 (Chloride channel, core)	GO:0005216 (ion channel activity), GO:0055085 (transmembrane transport)
Niben101Scf10650g02017.1	ref|NP_001047761.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf01142g03010.1	sp|A7TKR8|DED1_VANPO	****	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR001878 (Zinc finger, CCHC-type), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding)
Niben101Scf02452g04013.1	ref|XP_007019221.1|	--*-	Histone methyltransferases(H3-K4 specific),histone methyltransferases(H3-K36 specific), putative isoform 1 [Theobroma cacao] ref|XP_007019222.1| Histone methyltransferases(H3-K4 specific),histone methyltransferases(H3-K36 specific), putative isoform 1 [Theobroma cacao] ref|XP_007019223.1| Histone methyltransferases(H3-K4 specific),histone methyltransferases(H3-K36 specific), putative isoform 1 [Theobroma cacao] gb|EOY16446.1| Histone methyltransferases(H3-K4 specific),histone methyltransferases(H3-K36 specific), putative isoform 1 [Theobroma cacao] gb|EOY16447.1| Histone methyltransferases(H3-K4 specific),histone methyltransferases(H3-K36 specific), putative isoform 1 [Theobroma cacao] gb|EOY16448.1| Histone methyltransferases(H3-K4 specific),histone methyltransferases(H3-K36 specific), putative isoform 1 [Theobroma cacao]		
Niben101Ctg16090g00005.1	ref|XP_002515508.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46957.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08162g00017.1	AT1G75170.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=296	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf00180g00004.1	sp|Q9SXA6|ENDO1_ARATH	****	Endonuclease 1	IPR003154 (S1/P1 nuclease), IPR008947 (Phospholipase C/P1 nuclease domain)	GO:0003676 (nucleic acid binding), GO:0004519 (endonuclease activity), GO:0006308 (DNA catabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Ctg13057g00004.1	gb|KEH36768.1|	*-*-	zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula]		
Niben101Scf05732g04008.1	AT1G60870.1	***-	maternal effect embryo arrest 9 LENGTH=147		
Niben101Scf07006g00009.1	sp|Q8L7L1|SPHK1_ARATH	*-**	Sphingosine kinase 1	IPR001206 (Diacylglycerol kinase, catalytic domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf24482g00006.1	gb|KFJ92987.1|	****	16S rRNA methyltransferase [Pseudomonas sp. 1-7]	IPR006700 (Ribosomal RNA small subunit methyltransferase E), IPR029028 (Alpha/beta knot methyltransferases)	GO:0006364 (rRNA processing), GO:0008168 (methyltransferase activity)
Niben101Scf03816g00006.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf00360g03013.1	AT2G24395.1	***-	chaperone protein dnaJ-related LENGTH=132		
Niben101Scf19091g00014.1			Unknown protein		
Niben101Scf04887g01003.1	AT2G45570.1	*-*-	cytochrome P450, family 76, subfamily C, polypeptide 2 LENGTH=512	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03939g06023.1	gb|KEH31824.1|	****	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf05956g01004.1	emb|CDY45481.1|	*-*-	BnaCnng12400D [Brassica napus]		
Niben101Scf03733g03006.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05711g02009.1	sp|Q10PP8|MTP4_ORYSJ	--*-	Metal tolerance protein 4		
Niben101Scf05731g00011.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf02798g01021.1			Unknown protein		
Niben101Scf00069g00001.1	ref|XP_007050919.1|	***-	LYR motif-containing protein 7 isoform 1 [Theobroma cacao] gb|EOX95076.1| LYR motif-containing protein 7 isoform 1 [Theobroma cacao]		
Niben101Scf00837g03001.1			Unknown protein		
Niben101Scf00983g04006.1	sp|B3EMN6|PNP_CHLPB	--*-	Polyribonucleotide nucleotidyltransferase		
Niben101Scf08333g00001.1	sp|Q60756|TCF15_MOUSE	--*-	Transcription factor 15	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf06009g00025.1	AT5G61210.1	***-	soluble N-ethylmaleimide-sensitive factor adaptor protein 33 LENGTH=300	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf39319g00006.1	AT3G45670.1	*-**	Protein kinase superfamily protein LENGTH=379	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08488g00011.1	sp|Q9M907|PP217_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf18308g00005.1	gb|AEW48196.1|	*-*-	disease resistance protein RGH7 [Solanum chacoense]		
Niben101Scf03363g01019.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02764g02010.1	sp|Q9FFF9|APC1_ARATH	****	Anaphase-promoting complex subunit 1	IPR024990 (Anaphase-promoting complex subunit 1)	GO:0005680 (anaphase-promoting complex)
Niben101Scf05405g02003.1	sp|Q9FFP8|DEF06_ARATH	***-	Defensin-like protein 6	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf05653g00010.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf02002g04018.1	AT4G22360.1	*-*-	SWIB complex BAF60b domain-containing protein LENGTH=385	IPR003121 (SWIB/MDM2 domain), IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding), GO:0005515 (protein binding)
Niben101Scf01337g06005.1	emb|CDY27263.1|	--*-	BnaA09g35390D [Brassica napus]		
Niben101Scf05939g01013.1	sp|Q6Q3H3|TPSGD_VITVI	*-*-	(-)-germacrene D synthase	IPR008949 (Isoprenoid synthase domain)	
Niben101Scf08355g03021.1	dbj|GAF64163.1|	****	RNA methyltransferase [Bacillus sp. TS-2]	IPR029028 (Alpha/beta knot methyltransferases), IPR029064 (50S ribosomal protein L30e-like)	GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0008173 (RNA methyltransferase activity)
Niben101Scf25596g00004.1	sp|Q9S7H5|SCL21_ARATH	*-*-	Scarecrow-like protein 21	IPR005202 (Transcription factor GRAS), IPR030018 (Scarecrow-like protein 5/chitin-inducible gibberellin-responsive protein 2)	
Niben101Scf00095g08008.1	sp|Q7L0R7|RNF44_HUMAN	--*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf13926g01012.1	AT4G34150.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=247	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf25427g00001.1	AT4G22870.2	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=153	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01326g11038.1	sp|D1C2C6|FTSH2_SPHTD	--**	ATP-dependent zinc metalloprotease FtsH 2	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf06123g01018.1	sp|B3EE31|DNAJ_CHLL2	*-*-	Chaperone protein DnaJ	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR001623 (DnaJ domain), IPR011990 (Tetratricopeptide-like helical domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf05676g03006.1	sp|Q6AWW5|Y5262_ARATH	*-*-	Ankyrin repeat-containing protein		
Niben101Scf05413g00002.1	ref|XP_002530916.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF31465.1| conserved hypothetical protein [Ricinus communis]		
Niben101Ctg15027g00001.1	AT4G17140.3	*-*-	pleckstrin homology (PH) domain-containing protein LENGTH=4219		
Niben101Scf05621g02012.1	sp|P40282|H2A_PLAFA	-**-	Histone H2A	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf02503g02003.1	sp|Q75K81|C3H36_ORYSJ	--*-	Zinc finger CCCH domain-containing protein 36		
Niben101Scf04439g01023.1	gb|KEH40500.1|	*-*-	zinc finger CCCH domain protein, putative [Medicago truncatula]		
Niben101Scf01968g01040.1	ref|WP_017641190.1|	***-	ABC transporter substrate-binding protein [Pseudomonas sp. 313]	IPR010839 (Protein of unknown function DUF1446)	
Niben101Scf21560g00001.1	sp|Q84UU9|TPS06_ARATH	*-**	Terpenoid synthase 6	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf06132g00003.1	AT4G01240.1	*-*-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=659	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf07790g03026.1	sp|Q9ZS88|DER22_ARATH	***-	Derlin-2.2	IPR007599 (Derlin)	
Niben101Scf11856g00004.1	ref|XP_007022137.1|	***-	Heat stress transcription factor B-4b, putative [Theobroma cacao] gb|EOY13662.1| Heat stress transcription factor B-4b, putative [Theobroma cacao]		
Niben101Scf39528g00002.1	gb|AES88819.2|	***-	DNA-binding protein, putative [Medicago truncatula]		
Niben101Scf02227g01002.1	sp|Q0JHZ2|C3H11_ORYSJ	***-	Zinc finger CCCH domain-containing protein 11	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf01568g01023.1	AT5G25270.1	***-	Ubiquitin-like superfamily protein LENGTH=658	IPR019956 (Ubiquitin), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf02172g02008.1	AT5G61210.1	***-	soluble N-ethylmaleimide-sensitive factor adaptor protein 33 LENGTH=300	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Ctg14652g00001.1	sp|Q8LF97|ASK21_ARATH	***-	SKP1-like protein 21	IPR001232 (S-phase kinase-associated protein 1-like), IPR011333 (BTB/POZ fold), IPR016072 (SKP1 component, dimerisation)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf07423g03016.1	gb|AAM12781.1|	--*-	auxin-induced SAUR-like protein [Capsicum annuum]		
Niben101Scf06404g00009.1	sp|O04705|GAO1D_WHEAT	***-	Gibberellin 20 oxidase 1-D	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00199g02014.1	sp|Q8CXK5|FOSB_OCEIH	***-	Metallothiol transferase FosB	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf00350g03002.1	sp|Q8HVY3|RPOC2_SOYBN	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf03202g12002.1	ref|XP_002526654.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF35676.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf14325g00009.1	sp|Q6P011|EMC4_DANRE	***-	ER membrane protein complex subunit 4	IPR009445 (Protein of unknown function DUF1077, TMEM85)	
Niben101Scf00714g08016.1	sp|P54752|ARGD_NOSS1	***-	Acetylornithine aminotransferase	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00725g00011.1	emb|CDY57544.1|	***-	BnaA05g33450D [Brassica napus]		
Niben101Scf00447g02002.1	gb|KEH18747.1|	*-*-	intracellular protein transporter USO1-like protein, putative [Medicago truncatula]		
Niben101Scf06207g01009.1	gb|AFI72644.1|	*-*-	Ycf1, partial [Minthostachys mollis]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf00057g00035.1	sp|F4IME2|MSL8_ARATH	***-	Mechanosensitive ion channel protein 8	IPR006685 (Mechanosensitive ion channel MscS), IPR010920 (Like-Sm (LSM) domain)	GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02486g03013.1	sp|P94014|GL21_ARATH	***-	Germin-like protein subfamily 2 member 1	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf16276g00003.1	AT2G25530.1	***-	AFG1-like ATPase family protein LENGTH=655	IPR005654 (ATPase, AFG1-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01398g00004.1	sp|P28032|ADH2_SOLLC	*-*-	Alcohol dehydrogenase 2		
Niben101Scf09541g00003.1	sp|Q8L9W3|ATL23_ARATH	*-*-	E3 ubiquitin-protein ligase ATL23		
Niben101Scf04113g17025.1	sp|P22413|ENPP1_HUMAN	--*-	Ectonucleotide pyrophosphatase/phosphodiesterase family member 1		
Niben101Scf05767g03017.1	sp|Q6JAN0|GPR98_DANRE	--*-	G-protein coupled receptor 98		
Niben101Scf22589g00002.1			Unknown protein		
Niben101Scf06050g03004.1	sp|B8H444|FTSH_CAUCN	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00972g00013.1	sp|O15488|GLYG2_HUMAN	*-*-	Glycogenin-2	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf01395g03012.1	AT1G30760.1	****	FAD-binding Berberine family protein LENGTH=534	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05000g00002.1	sp|Q0WPW4|ACCO5_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase 5	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf04456g03003.1	sp|Q9SV13|SUT31_ARATH	****	Sulfate transporter 3.1	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport), GO:1902358 (sulfate transmembrane transport)
Niben101Scf07728g02013.1	ref|WP_026733342.1|	***-	epimerase [Fischerella sp. PCC 9605]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf01660g00007.1	AT4G14090.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=456	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03577g01023.1	sp|Q9SRT2|BH062_ARATH	***-	Transcription factor bHLH62	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03309g01011.1	sp|A2WT95|PLA1_ORYSI	***-	Phospholipase A1-II 1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf00204g00004.1	sp|Q876F5|SC242_SACU7	****	Protein transport protein SEC24-2	IPR002035 (von Willebrand factor, type A), IPR006895 (Zinc finger, Sec23/Sec24-type), IPR006896 (Sec23/Sec24, trunk domain), IPR006900 (Sec23/Sec24, helical domain)	GO:0006886 (intracellular protein transport), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0008270 (zinc ion binding), GO:0030127 (COPII vesicle coat)
Niben101Scf08407g00001.1	sp|D3ZWE7|HORM1_RAT	--*-	HORMA domain-containing protein 1	IPR003511 (DNA-binding HORMA)	
Niben101Scf00839g04010.1	ref|XP_002518781.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF43706.1| DNA binding protein, putative [Ricinus communis]	IPR007930 (Protein of unknown function DUF724), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf03350g09017.1	AT5G64950.1	****	Mitochondrial transcription termination factor family protein LENGTH=391	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03939g06022.1	sp|Q96499|RL44_GOSHI	***-	60S ribosomal protein L44	IPR000552 (Ribosomal protein L44e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02360g04001.1	sp|Q94A79|DMS3_ARATH	***-	Protein DEFECTIVE IN MERISTEM SILENCING 3		
Niben101Scf05157g04006.1	sp|Q9SK02|RA51B_ARATH	****	DNA repair protein RAD51 homolog 2	IPR013632 (DNA recombination and repair protein Rad51, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0008094 (DNA-dependent ATPase activity)
Niben101Scf03141g04016.1	AT1G42430.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=426		
Niben101Scf01697g23018.1	sp|Q23919|PGM1_DICDI	***-	Phosphoglucomutase-1	IPR005841 (Alpha-D-phosphohexomutase superfamily)	GO:0000287 (magnesium ion binding), GO:0005975 (carbohydrate metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf01674g00001.1	sp|Q9FII5|TDR_ARATH	--*-	Leucine-rich repeat receptor-like protein kinase TDR	IPR001611 (Leucine-rich repeat), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf09696g01041.1			Unknown protein		
Niben101Scf13289g02013.1			Unknown protein		
Niben101Scf13595g01023.1	gb|ACG45151.1|	***-	fiber protein Fb11 [Zea mays]		
Niben101Scf00451g03015.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf05697g04002.1			Unknown protein		
Niben101Scf02615g00003.1	sp|Q3UDK1|TRAD1_MOUSE	*-**	TRAF-type zinc finger domain-containing protein 1	IPR001293 (Zinc finger, TRAF-type)	GO:0008270 (zinc ion binding)
Niben101Scf09025g02042.1	ref|XP_003602287.1|	***-	RNA-binding protein with multiple splicing [Medicago truncatula]		
Niben101Scf02849g09006.1	ref|XP_007042311.1|	*-**	DNA binding protein, putative isoform 3 [Theobroma cacao] gb|EOX98142.1| DNA binding protein, putative isoform 3 [Theobroma cacao]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf04777g05004.1	AT2G22620.1	***-	Rhamnogalacturonate lyase family protein LENGTH=677	IPR008979 (Galactose-binding domain-like)	
Niben101Scf03868g01004.1			Unknown protein		
Niben101Ctg16292g00001.1	sp|Q566M8|RN150_DANRE	--*-	RING finger protein 150	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07727g02002.1			Unknown protein		
Niben101Scf02052g00015.1	sp|C0ZAS6|URK_BREBN	*-**	Uridine kinase	IPR000764 (Uridine kinase like), IPR023577 (CYTH-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016301 (kinase activity)
Niben101Scf01607g02001.1	sp|P09607|PME21_SOLLC	*-**	Pectinesterase 2.1	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02167g00008.1	sp|Q318V5|CH10_PROM9	-**-	10 kDa chaperonin	IPR020818 (Chaperonin Cpn10)	GO:0005737 (cytoplasm), GO:0006457 (protein folding)
Niben101Scf04950g07021.1	gb|KEH40132.1|	--*-	F-box protein interaction domain protein [Medicago truncatula]	IPR017451 (F-box associated interaction domain)	
Niben101Scf06826g05004.1			Unknown protein		
Niben101Scf02530g02010.1	sp|P21885|SPEA_BACSU	***-	Arginine decarboxylase	IPR008286 (Orn/Lys/Arg decarboxylase, C-terminal), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01411g00012.1	sp|Q9CA64|PRE3_ARATH	***-	Transcription factor PRE3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05174g01002.1	AT5G42890.1	***-	sterol carrier protein 2 LENGTH=123	IPR003033 (SCP2 sterol-binding domain)	
Niben101Scf01623g01026.1			Unknown protein		
Niben101Scf09530g01010.1	sp|Q7XWU8|EXPA1_ORYSJ	***-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf05627g01015.1	sp|F4I1S7|ELP2_ARATH	***-	Elongator complex protein 2	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf00682g04003.1	AT3G53090.1	****	ubiquitin-protein ligase 7 LENGTH=1142	IPR000569 (HECT)	GO:0004842 (ubiquitin-protein transferase activity)
Niben101Scf02798g01023.1	ref|YP_009091714.1|	***-	orf105 (mitochondrion) [Panax ginseng] gb|AHJ81036.1| orf105 (mitochondrion) [Panax ginseng]		
Niben101Scf11557g03003.1			Unknown protein		
Niben101Scf02947g00003.1	gb|ACF19787.1|	*-**	NAC transcription factor [Nicotiana tabacum]	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01239g03007.1	sp|Q94JX9|NACA2_ARATH	***-	Nascent polypeptide-associated complex subunit alpha-like protein 2	IPR016641 (Nascent polypeptide-associated complex subunit alpha)	
Niben101Scf07765g01011.1	sp|Q9SA82|BH052_ARATH	*-*-	Transcription factor bHLH52	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02502g10020.1	sp|P43386|GLNA_HALVD	***-	Glutamine synthetase	IPR014746 (Glutamine synthetase/guanido kinase, catalytic domain)	GO:0003824 (catalytic activity), GO:0004356 (glutamate-ammonia ligase activity), GO:0006807 (nitrogen compound metabolic process)
Niben101Scf00962g02007.1	sp|P62694|GUX1_HYPJE	--*-	Exoglucanase 1		
Niben101Scf09906g02025.1	sp|B2GI63|MSHD_KOCRD	--**	Mycothiol acetyltransferase	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Ctg14075g00001.1	sp|Q9SWE7|VATE_CITLI	*-**	V-type proton ATPase subunit E	IPR002842 (ATPase, V1/A1 complex, subunit E)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf00261g02005.1	ref|XP_007040778.1|	***-	5'-AMP-activated protein kinase subunit gamma-3, putative [Theobroma cacao] gb|EOY25279.1| 5'-AMP-activated protein kinase subunit gamma-3, putative [Theobroma cacao]	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf06128g00010.1	sp|Q9SA23|SYP51_ARATH	***-	Syntaxin-51	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf01417g03001.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Ctg15194g00003.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf02450g01007.1	sp|Q10PP8|MTP4_ORYSJ	***-	Metal tolerance protein 4	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain), IPR027470 (Cation efflux protein cytoplasmic domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf06545g03014.1	sp|Q7XJN6|PP197_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05095g01009.1	sp|Q9C7F5|NTF2_ARATH	****	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2)	GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf03562g04005.1	sp|Q93YU2|RUS6_ARATH	***-	Protein root UVB sensitive 6	IPR006968 (Root UVB sensitive family)	
Niben101Scf01863g07004.1	sp|O81001|GRF1_ARATH	***-	Growth-regulating factor 1	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf01155g05002.1	emb|CDY47633.1|	***-	BnaC05g18890D [Brassica napus]	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Scf05855g01010.1	sp|P10973|NLTPA_RICCO	***-	Non-specific lipid-transfer protein A	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf17802g02011.1	sp|O65390|APA1_ARATH	****	Aspartic proteinase A1	IPR001461 (Aspartic peptidase), IPR011001 (Saposin-like), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis), GO:0006629 (lipid metabolic process)
Niben101Scf36713g00001.1	sp|Q3V535|PSAB_ACOCL	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf12994g02001.1	sp|O49250|CYCLD_ANTMA	*-*-	Transcription factor CYCLOIDEA	IPR005333 (Transcription factor, TCP)	
Niben101Scf00577g10001.1	emb|CDY48585.1|	*-*-	BnaCnng16440D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf14274g00007.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf07695g01024.1	sp|Q2MGH6|GH101_STRPN	--*-	Endo-alpha-N-acetylgalactosaminidase		
Niben101Scf04174g05007.1	sp|Q5E9N0|BYST_BOVIN	***-	Bystin	IPR007955 (Bystin)	
Niben101Scf04819g03005.1	AT2G47350.1	***-	HIT zinc finger ;PAPA-1-like conserved region LENGTH=486	IPR006880 (INO80 complex subunit B-like conserved region), IPR007529 (Zinc finger, HIT-type), IPR029523 (INO80 complex, subunit Ies2)	GO:0006338 (chromatin remodeling), GO:0006355 (regulation of transcription, DNA-templated), GO:0031011 (Ino80 complex)
Niben101Scf07987g00005.1			Unknown protein	IPR021775 (Protein of unknown function DUF3339)	
Niben101Scf04144g00001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09978g01017.1	sp|P00521|ABL_MLVAB	--*-	Tyrosine-protein kinase transforming protein Abl		
Niben101Scf04943g01017.1			Unknown protein		
Niben101Scf01369g04024.1	sp|Q9SFX3|OST1A_ARATH	****	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A	IPR007676 (Ribophorin I)	GO:0004579 (dolichyl-diphosphooligosaccharide-protein glycotransferase activity), GO:0005783 (endoplasmic reticulum), GO:0006486 (protein glycosylation), GO:0016021 (integral component of membrane)
Niben101Scf06312g00001.1	sp|P77966|GYRB_SYNY3	*-**	DNA gyrase subunit B	IPR001241 (DNA topoisomerase, type IIA)	GO:0003677 (DNA binding), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0006265 (DNA topological change)
Niben101Scf00482g12001.1	sp|O95201|ZN205_HUMAN	--*-	Zinc finger protein 205	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01917g11014.1	AT2G31600.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=301	IPR025927 (Potential DNA-binding domain)	
Niben101Scf00220g01001.1	emb|CDY67581.1|	***-	BnaC01g44360D [Brassica napus]		
Niben101Scf00662g01009.1	AT1G27700.1	***-	Syntaxin/t-SNARE family protein LENGTH=297	IPR010989 (t-SNARE)	GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport), GO:0048193 (Golgi vesicle transport)
Niben101Scf05967g00003.1	sp|Q4V7B8|RNF44_RAT	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02375g06001.1	sp|O04135|KNAP2_MALDO	***-	Homeobox protein knotted-1-like 2	IPR005539 (ELK), IPR005540 (KNOX1), IPR005541 (KNOX2), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04271g07007.1	ref|XP_003594059.1|	***-	Baculoviral IAP repeat-containing protein [Medicago truncatula]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf13141g02001.1	sp|O64982|PRS7_PRUPE	*-*-	26S protease regulatory subunit 7	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01991g01028.1	sp|Q7Z6J9|SEN54_HUMAN	*-*-	tRNA-splicing endonuclease subunit Sen54	IPR024336 (tRNA-splicing endonuclease, subunit Sen54, N-terminal), IPR024337 (tRNA-splicing endonuclease, subunit Sen54)	
Niben101Scf03863g06002.1	gb|KFG64306.1|	*-*-	esterase/lipase/thioesterase domain-containing protein [Toxoplasma gondii RUB]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01409g00008.1			Unknown protein		
Niben101Scf01035g01002.1	ref|WP_005934210.1|	--*-	MULTISPECIES: por secretion system C-terminal sorting domain-containing protein [Bacteroides] gb|EIY55823.1| hypothetical protein HMPREF1071_04522 [Bacteroides salyersiae CL02T12C01] gb|EOA48019.1| por secretion system C-terminal sorting domain-containing protein [Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988] emb|CCY47783.1| uncharacterized protein BN523_01202 [Bacteroides sp. CAG:189]		
Niben101Scf15724g00001.1			Unknown protein		
Niben101Scf05268g00012.1	sp|Q9EPJ9|ARFG1_MOUSE	*-**	ADP-ribosylation factor GTPase-activating protein 1	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf05880g03007.1	sp|P40977|PLC1_SCHPO	****	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase 1	IPR001192 (Phosphoinositide phospholipase C family), IPR011992 (EF-hand domain pair)	GO:0004435 (phosphatidylinositol phospholipase C activity), GO:0005515 (protein binding), GO:0006629 (lipid metabolic process), GO:0007165 (signal transduction), GO:0008081 (phosphoric diester hydrolase activity), GO:0035556 (intracellular signal transduction)
Niben101Scf05649g02013.1	AT3G56570.1	***-	SET domain-containing protein LENGTH=531	IPR011383 (RuBisCO-cytochrome methylase, RMS1)	GO:0005515 (protein binding)
Niben101Scf05025g10013.1	sp|Q01780|EXOSX_HUMAN	*-*-	Exosome component 10	IPR002121 (HRDC domain), IPR012337 (Ribonuclease H-like domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003824 (catalytic activity), GO:0005622 (intracellular), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity), GO:0044237 (cellular metabolic process)
Niben101Scf03445g02007.1	AT5G63050.1	***-	embryo defective 2759 LENGTH=345		
Niben101Scf00478g06002.1	sp|Q9M3V8|RS6_ASPOF	***-	40S ribosomal protein S6	IPR001377 (Ribosomal protein S6e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03309g04008.1	sp|A2WT95|PLA1_ORYSI	***-	Phospholipase A1-II 1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf03772g01002.1	AT4G16745.2	***-	Exostosin family protein LENGTH=589	IPR004263 (Exostosin-like)	
Niben101Scf05689g01003.1	AT3G09430.1	*-*-	unknown protein; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=301		
Niben101Scf00422g01003.1	sp|Q99K82|SMOX_MOUSE	***-	Spermine oxidase	IPR002937 (Amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10749g01003.1	gb|KEH42602.1|	****	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf10919g01025.1	sp|P28475|S6PD_MALDO	***-	NADP-dependent D-sorbitol-6-phosphate dehydrogenase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03848g02003.1			Unknown protein		
Niben101Scf04895g00003.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08415g00007.1	sp|P22852|TBB_POLAG	***-	Tubulin beta chain	IPR000217 (Tubulin)	GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0007017 (microtubule-based process)
Niben101Scf05368g04008.1	sp|Q9T048|DRL27_ARATH	***-	Disease resistance protein	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf06967g02002.1	gb|KEH23715.1|	--*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf08341g07010.1	sp|P42041|ALDH_ALTAL	****	Aldehyde dehydrogenase	IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf05885g01008.1	AT5G01890.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=967	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf14562g00015.1	sp|Q9XGX7|TIM9_ORYSJ	***-	Mitochondrial import inner membrane translocase subunit Tim9	IPR004217 (Tim10/DDP family zinc finger)	
Niben101Scf11325g00032.1	sp|P51414|RL261_ARATH	****	60S ribosomal protein L26-1	IPR005756 (Ribosomal protein L26/L24P, eukaryotic/archaeal), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf03028g04009.1	AT1G21722.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=233		
Niben101Scf00056g07005.1			Unknown protein		
Niben101Scf07681g02008.1	AT2G27080.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=260	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf12258g01003.1	AT2G40710.1	****	Haemolysin-III related integral membrane protein LENGTH=93	IPR004254 (AdipoR/Haemolysin-III-related)	GO:0016021 (integral component of membrane)
Niben101Scf00301g01005.1	AT5G06850.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=794	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf14606g01003.1	sp|Q9SHK2|PPR17_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf18121g00020.1	sp|Q9CQ48|NUDC2_MOUSE	***-	NudC domain-containing protein 2	IPR008978 (HSP20-like chaperone)	
Niben101Scf02467g01037.1	ref|XP_003609404.1|	*-*-	Telomere-associated protein RIF1 [Medicago truncatula] gb|AES91601.1| Rap1-interacting factor 1 amino-terminal protein [Medicago truncatula]	IPR022031 (Telomere-associated protein Rif1, N-terminal)	
Niben101Scf03907g01016.1	AT5G51680.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=343		
Niben101Scf04558g02036.1	AT5G06150.1	****	Cyclin family protein LENGTH=445	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf08504g00004.1	emb|CDY10775.1|	*-*-	BnaA05g11610D [Brassica napus]		
Niben101Scf00247g00013.1			Unknown protein		
Niben101Scf01464g00001.1	sp|O49118|H2B_CAPAN	*-*-	Histone H2B	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf00055g03019.1	AT1G75170.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=296	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf01655g02022.1	AT1G01730.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=224		
Niben101Scf01655g04030.1	AT3G48980.1	*-*-	Arabidopsis thaliana protein of unknown function (DUF821) LENGTH=539	IPR006598 (Lipopolysaccharide-modifying protein)	
Niben101Scf07170g01009.1	sp|Q08069|RS8_MAIZE	***-	40S ribosomal protein S8	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01194g00005.1	AT4G24090.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 144 Blast hits to 142 proteins in 73 species: Archae - 3; Bacteria - 62; Metazoa - 7; Fungi - 13; Plants - 44; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). LENGTH=308		
Niben101Scf08341g00020.1	AT1G65790.1	****	receptor kinase 1 LENGTH=843	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf30958g00013.1	sp|A7SE07|NUBP2_NEMVE	*-*-	Cytosolic Fe-S cluster assembly factor NUBP2 homolog	IPR002744 (Domain of unknown function DUF59), IPR010376 (Domain of unknown function DUF971), IPR019591 (Mrp/NBP35 ATP-binding protein), IPR025669 (AAA domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02232g02006.1	sp|Q8J0Q0|MNS1_CANAX	****	Mannosyl-oligosaccharide 1,2-alpha-mannosidase	IPR001382 (Glycoside hydrolase, family 47)	GO:0004571 (mannosyl-oligosaccharide 1,2-alpha-mannosidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane)
Niben101Scf04804g04001.1	sp|B1L6S7|PSB1_KORCO	****	Proteasome subunit beta 1	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf00542g03001.1	gb|KEH37791.1|	--*-	F-box/RNI/FBD-like domain protein [Medicago truncatula]		
Niben101Scf02798g01065.1	emb|CAJ70646.1|	***-	cytochrome c biogenesis protein [Helianthus annuus]		
Niben101Scf03739g07008.1	sp|O16102|CHD3_DROME	*-*-	Chromodomain-helicase-DNA-binding protein 3	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf06205g02013.1	sp|Q769F9|TMEDA_DICDI	***-	Transmembrane emp24 domain-containing protein A	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf14323g01022.1	sp|P41216|ACSL1_MOUSE	***-	Long-chain-fatty-acid--CoA ligase 1	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03886g03003.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf01826g07049.1	ref|NP_173857.2|	*-*-	S-aden [Arabidopsis thaliana]		
Niben101Scf10095g02011.1			Unknown protein		
Niben101Scf00023g06009.1	ref|XP_007020738.1|	***-	LIM and calponin domains-containing protein 1, putative [Theobroma cacao] gb|EOY12263.1| LIM and calponin domains-containing protein 1, putative [Theobroma cacao]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf01171g05008.1	sp|Q67ZU1|LIP2_ARATH	*-*-	Triacylglycerol lipase 2	IPR006693 (Partial AB-hydrolase lipase domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf01866g00004.1	sp|P16866|H2A4_VOLCA	***-	Histone H2A-IV	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf17477g00007.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf10671g00001.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00973g01001.1	AT3G14250.1	***-	RING/U-box superfamily protein LENGTH=303	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05804g04012.1	sp|Q5XIA4|CNO10_RAT	***-	CCR4-NOT transcription complex subunit 10	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01448g02005.1	gb|KEH17617.1|	*-*-	structural constituent of cell wall protein, putative [Medicago truncatula]	IPR010820 (Protein of unknown function DUF1421)	
Niben101Scf02192g01016.1	sp|Q54VZ8|EXOC8_DICDI	*-*-	Exocyst complex component 8	IPR016159 (Cullin repeat-like-containing domain)	
Niben101Scf02699g01012.1	AT1G03350.1	*-*-	BSD domain-containing protein LENGTH=470	IPR005607 (BSD)	
Niben101Scf02880g00011.1	sp|O23252|IF4E1_ARATH	****	Eukaryotic translation initiation factor 4E-1	IPR001040 (Translation Initiation factor eIF- 4e), IPR023398 (Translation Initiation factor eIF- 4e-like  domain)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0006413 (translational initiation)
Niben101Scf01051g07001.1	sp|Q60864|STIP1_MOUSE	*-*-	Stress-induced-phosphoprotein 1	IPR006636 (Heat shock chaperonin-binding)	
Niben101Scf06583g01006.1			Unknown protein	IPR018289 (MULE transposase domain)	
Niben101Scf07463g01018.1	sp|Q681K7|GEX1_ARATH	***-	Protein GAMETE EXPRESSED 1		
Niben101Scf03307g04014.1	sp|P27061|PPA1_SOLLC	****	Acid phosphatase 1	IPR005519 (Acid phosphatase (Class B)), IPR023214 (HAD-like domain)	GO:0003993 (acid phosphatase activity)
Niben101Scf01687g02006.1	AT3G07030.1	*-**	Alba DNA/RNA-binding protein LENGTH=405	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Scf15568g00031.1	sp|Q8GXF0|RA51C_ARATH	****	DNA repair protein RAD51 homolog 3	IPR016467 (DNA recombination and repair protein, RecA-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0008094 (DNA-dependent ATPase activity)
Niben101Scf14634g01035.1	AT2G27820.1	****	prephenate dehydratase 1 LENGTH=424	IPR001086 (Prephenate dehydratase), IPR002912 (ACT domain)	GO:0004664 (prephenate dehydratase activity), GO:0008152 (metabolic process), GO:0009094 (L-phenylalanine biosynthetic process), GO:0016597 (amino acid binding)
Niben101Scf18156g00009.1	sp|Q58CR3|EIF2D_BOVIN	--*-	Eukaryotic translation initiation factor 2D		
Niben101Scf04745g04004.1	sp|P54692|DAAA_BACLI	***-	D-alanine aminotransferase	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00712g16028.1	AT2G30600.5	***-	BTB/POZ domain-containing protein LENGTH=855	IPR008979 (Galactose-binding domain-like), IPR011333 (BTB/POZ fold), IPR011705 (BTB/Kelch-associated)	GO:0005515 (protein binding)
Niben101Scf07152g04034.1	emb|CDX78075.1|	***-	BnaA09g32700D [Brassica napus]		
Niben101Scf06888g01003.1	AT1G05420.1	*-*-	ovate family protein 12 LENGTH=226	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf02112g02017.1	sp|Q9SKK0|EBF1_ARATH	****	EIN3-binding F-box protein 1	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf02562g02011.1	AT2G18570.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=470	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04554g07026.1	AT2G24420.1	***-	DNA repair ATPase-related LENGTH=440		
Niben101Scf00699g00006.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01143g09017.1	sp|B3H4F1|SP1L1_ARATH	***-	Protein SPIRAL1-like 1		
Niben101Scf05559g00001.1	sp|J9RLZ7|TPS1_VALOF	*-**	Germacrene C/D synthase	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf00578g05007.1	AT4G27280.1	****	Calcium-binding EF-hand family protein LENGTH=130	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf04477g01007.1	sp|A9IYW8|ATPG_BART1	****	ATP synthase gamma chain	IPR000131 (ATPase, F1 complex, gamma subunit), IPR023632 (ATPase, F1 complex, gamma subunit conserved site), IPR023633 (ATPase, F1 complex, gamma subunit domain)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Ctg10585g00004.1	sp|Q9FH05|SCP42_ARATH	*-**	Serine carboxypeptidase-like 42	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06392g01004.1	AT2G37710.1	*-**	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf12410g00013.1	sp|Q9SLB7|LBD16_ARATH	*-*-	LOB domain-containing protein 16	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf03224g06001.1	AT1G15910.1	***-	XH/XS domain-containing protein LENGTH=634	IPR005379 (Uncharacterised domain XH), IPR005380 (XS domain), IPR005381 (Zinc finger-XS domain)	GO:0031047 (gene silencing by RNA)
Niben101Scf08045g02005.1	sp|Q9K9K5|SPEA_BACHD	***-	Arginine decarboxylase	IPR008286 (Orn/Lys/Arg decarboxylase, C-terminal), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02366g00003.1			Unknown protein		
Niben101Scf02133g00014.1	sp|Q8RXN4|HIBC5_ARATH	*-*-	3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial	IPR029045 (ClpP/crotonase-like domain)	
Niben101Scf01005g06010.1	sp|Q9SW08|AB4G_ARATH	***-	ABC transporter G family member 4	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf01784g08002.1			Unknown protein		
Niben101Scf00103g04023.1	ref|XP_007033561.1|	--*-	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative [Theobroma cacao] gb|EOY04487.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative [Theobroma cacao]		
Niben101Scf01701g12001.1	AT5G42990.1	***-	ubiquitin-conjugating enzyme 18 LENGTH=161	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf04216g07017.1	AT1G35670.1	****	calcium-dependent protein kinase 2 LENGTH=495	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf14717g00010.1	sp|P46300|RS4_SOLTU	***-	40S ribosomal protein S4	IPR000876 (Ribosomal protein S4e)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07580g07003.1			Unknown protein		
Niben101Scf25633g00013.1	sp|Q86KK2|FHIT_DICDI	*-*-	Bis(5'-adenosyl)-triphosphatase	IPR001310 (Histidine triad (HIT) protein), IPR011146 (HIT-like domain)	GO:0003824 (catalytic activity)
Niben101Scf06769g02001.1			Unknown protein		
Niben101Scf01052g01004.1	sp|Q39313|DEF3_BRANA	***-	Defensin-like protein 3	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf16252g01001.1	sp|A2BZ92|AROE_PROM5	--*-	Shikimate dehydrogenase		
Niben101Scf06348g00008.1	sp|B1HS82|RSMA_LYSSC	*-*-	Ribosomal RNA small subunit methyltransferase A	IPR001737 (Ribosomal RNA adenine methyltransferase KsgA/Erm), IPR023165 (rRNA adenine dimethylase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf09260g00006.1	sp|Q3C1Q5|CCSA_NICSY	*-**	Cytochrome c biogenesis protein CcsA	IPR002541 (Cytochrome c assembly protein)	GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf08624g00002.1	AT4G12010.1	*-*-	Disease resistance protein (TIR-NBS-LRR class) family LENGTH=1219		
Niben101Scf01750g13009.1	gb|ADH43621.1|	***-	sex-linked protein 9 [Silene latifolia]	IPR017498 (Photosystem I PsaO)	
Niben101Scf02191g00016.1	AT1G43710.1	****	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein LENGTH=482	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02203g03013.1			Unknown protein		
Niben101Scf02839g02013.1	emb|CDY44034.1|	***-	BnaA08g15720D [Brassica napus]		
Niben101Scf00426g02006.1	AT5G47635.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=164		
Niben101Scf03929g00001.1	ref|XP_007043499.1|	***-	Micronuclear linker histone polyprotein-like protein [Theobroma cacao] gb|EOX99330.1| Micronuclear linker histone polyprotein-like protein [Theobroma cacao]		
Niben101Scf00837g05005.1	AT2G25737.1	***-	Sulfite exporter TauE/SafE family protein LENGTH=476	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf08478g03024.1	sp|Q9Z1G4|VPP1_MOUSE	--*-	V-type proton ATPase 116 kDa subunit a isoform 1		
Niben101Scf02195g04002.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf30081g00016.1	sp|O04660|GLR21_ARATH	*-*-	Glutamate receptor 2.1	IPR028082 (Periplasmic binding protein-like I)	
Niben101Scf01954g02004.1	sp|O23090|BH014_ARATH	***-	Transcription factor bHLH14	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf04113g07011.1	ref|NP_001051767.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Ctg13039g00001.1	sp|Q9C9J0|LHTL5_ARATH	*-*-	Lysine histidine transporter-like 5	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf08637g01005.1	sp|Q9ZUN5|TET2_ARATH	*-*-	Tetraspanin-2	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf08716g01031.1	sp|Q8S8Y4|PSBK_ATRBE	****	Photosystem II reaction center protein K	IPR003687 (Photosystem II PsbK)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0015979 (photosynthesis)
Niben101Scf00713g00009.1	sp|Q40554|EIF3A_TOBAC	****	Eukaryotic translation initiation factor 3 subunit A	IPR000717 (Proteasome component (PCI) domain), IPR027512 (Eukaryotic translation initiation factor 3 subunit A)	GO:0005515 (protein binding), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf05317g00002.1	AT4G00110.1	****	UDP-D-glucuronate 4-epimerase 3 LENGTH=430	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf15519g00001.1	sp|P46510|CAHX_FLABI	*-*-	Carbonic anhydrase	IPR001765 (Carbonic anhydrase)	GO:0004089 (carbonate dehydratase activity), GO:0008270 (zinc ion binding)
Niben101Scf00409g00002.1	sp|Q72W01|AROC_LEPIC	****	Chorismate synthase	IPR000453 (Chorismate synthase)	GO:0004107 (chorismate synthase activity), GO:0009073 (aromatic amino acid family biosynthetic process)
Niben101Scf03839g04016.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03733g03005.1	sp|Q8GXA4|WIP1_ARATH	***-	WPP domain-interacting protein 1		
Niben101Scf04117g10022.1	sp|A3PBQ8|ACCA_PROM0	*-**	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	IPR001095 (Acetyl-CoA carboxylase, alpha subunit), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR029030 (Caspase-like domain), IPR029045 (ClpP/crotonase-like domain)	GO:0003989 (acetyl-CoA carboxylase activity), GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0006633 (fatty acid biosynthetic process), GO:0009317 (acetyl-CoA carboxylase complex)
Niben101Scf01014g09002.1			Unknown protein		
Niben101Scf00595g08047.1	sp|Q6VAF7|TBB5_GOSHI	*-*-	Tubulin beta-5 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf00294g02016.1	sp|Q9LSS5|ICR3_ARATH	***-	Interactor of constitutive active ROPs 3		
Niben101Scf17422g00019.1	sp|Q6NQI8|LAG13_ARATH	--*-	LAG1 longevity assurance homolog 3		
Niben101Scf03460g03003.1	sp|Q42517|PERN_ARMRU	****	Peroxidase N	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05351g02004.1	sp|Q9LNW3|P2C03_ARATH	****	Protein phosphatase 2C 3	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf03757g02002.1	AT2G35880.1	***-	TPX2 (targeting protein for Xklp2) protein family LENGTH=432	IPR027329 (TPX2, C-terminal domain)	
Niben101Scf00960g15005.1			Unknown protein		
Niben101Scf00821g04002.1	sp|Q8RQD1|GLND_AZOBR	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf06996g01003.1	sp|Q5BIY5|RN145_XENLA	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09716g02012.1	ref|XP_002518699.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF43624.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06789g04016.1	sp|Q9M651|RAGP2_ARATH	***-	RAN GTPase-activating protein 2	IPR003590 (Leucine-rich repeat, ribonuclease inhibitor subtype), IPR025265 (WPP domain)	
Niben101Scf01358g01001.1	gb|KEH30862.1|	*-*-	linker histone H1 and h5 family protein [Medicago truncatula]	IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf22230g00002.1	sp|Q4V7B8|RNF44_RAT	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00327g00014.1	sp|P51104|DFRA_DIACA	*-*-	Dihydroflavonol-4-reductase	IPR016040 (NAD(P)-binding domain)	
Niben101Scf03038g09001.1			Unknown protein		
Niben101Scf11468g00008.1	sp|Q9M3B9|AB20B_ARATH	--*-	ABC transporter B family member 20	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf04216g07016.1	sp|A9IM54|RL21_BART1	*-*-	50S ribosomal protein L21	IPR028909 (Ribosomal protein L21-like)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07229g01005.1	sp|Q9C889|PR1F2_ARATH	*-*-	PRA1 family protein F2	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf04653g02004.1	AT5G50240.1	****	protein-l-isoaspartate methyltransferase 2 LENGTH=309	IPR000682 (Protein-L-isoaspartate(D-aspartate) O-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0004719 (protein-L-isoaspartate (D-aspartate) O-methyltransferase activity), GO:0006464 (cellular protein modification process)
Niben101Scf01959g06015.1	ref|XP_007025645.1|	*-*-	Smr domain-containing protein YPL199C, putative isoform 4 [Theobroma cacao] gb|EOY28267.1| Smr domain-containing protein YPL199C, putative isoform 4 [Theobroma cacao]		
Niben101Scf05939g01014.1	sp|Q8VYD6|PP374_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf06661g03006.1	sp|Q7F8R0|C3H14_ORYSJ	***-	Zinc finger CCCH domain-containing protein 14	IPR000571 (Zinc finger, CCCH-type), IPR004087 (K Homology domain), IPR013563 (Oligopeptide/dipeptide ABC transporter, C-terminal)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005524 (ATP binding), GO:0015833 (peptide transport), GO:0046872 (metal ion binding)
Niben101Scf03001g00001.1	sp|Q8NEZ4|KMT2C_HUMAN	*-*-	Histone-lysine N-methyltransferase 2C	IPR001214 (SET domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05697g02007.1	AT3G52990.1	*-**	Pyruvate kinase family protein LENGTH=527	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf01119g01006.1	emb|CDY55840.1|	***-	BnaCnng29290D [Brassica napus]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04939g01005.1	gb|KEH18936.1|	***-	BON1-associated-like protein [Medicago truncatula]	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf03152g00007.1	sp|Q0ZIV6|YCF2_VITVI	*-*-	Protein Ycf2		
Niben101Scf01375g09008.1	ref|XP_007038908.1|	***-	LIM domain-containing protein A, putative isoform 1 [Theobroma cacao] gb|EOY23409.1| LIM domain-containing protein A, putative isoform 1 [Theobroma cacao]		
Niben101Scf07926g04009.1	sp|Q7MH19|ARGD_VIBVY	***-	Acetylornithine aminotransferase	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf05543g01004.1	gb|KEH31891.1|	*-*-	WW domain-binding protein [Medicago truncatula]	IPR019007 (WW domain binding protein 11)	GO:0006396 (RNA processing)
Niben101Scf03710g03006.1			Unknown protein		
Niben101Scf01259g10014.1	sp|Q8XZP8|CYSA_RALSO	--*-	Sulfate/thiosulfate import ATP-binding protein CysA	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf15672g00001.1	AT2G37420.1	*-**	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf02503g02002.1	AT2G33830.2	*-*-	Dormancy/auxin associated family protein LENGTH=108	IPR008406 (Dormancyauxin associated)	
Niben101Scf05310g02003.1	sp|Q8N7C7|RN148_HUMAN	*-*-	RING finger protein 148	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00925g00003.1	AT1G14590.1	*-*-	Nucleotide-diphospho-sugar transferase family protein LENGTH=386	IPR005069 (Nucleotide-diphospho-sugar transferase)	
Niben101Scf09260g03025.1	AT2G01818.1	***-	PLATZ transcription factor family protein LENGTH=222	IPR000315 (Zinc finger, B-box), IPR006734 (Protein of unknown function DUF597)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf04197g01022.1	sp|Q0VCZ3|YTHD2_BOVIN	*-*-	YTH domain-containing family protein 2	IPR007275 (YTH domain)	
Niben101Scf09157g00020.1	sp|Q3MAL4|DAPT1_ANAVT	****	LL-diaminopimelate aminotransferase 1	IPR015424 (Pyridoxal phosphate-dependent transferase), IPR019942 (LL-diaminopimelate aminotransferase, plants and Chlamydia type)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0009089 (lysine biosynthetic process via diaminopimelate), GO:0010285 (L,L-diaminopimelate aminotransferase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02354g13002.1	sp|Q57LW6|FADJ_SALCH	****	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0003857 (3-hydroxyacyl-CoA dehydrogenase activity), GO:0006631 (fatty acid metabolic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06603g03003.1	sp|P98204|ALA1_ARATH	*-**	Phospholipid-transporting ATPase 1	IPR006539 (P-type ATPase, subfamily IV)	GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane)
Niben101Scf01905g01002.1	sp|Q5SMI4|RL393_ORYSJ	***-	60S ribosomal protein L39-3	IPR000077 (Ribosomal protein L39e), IPR023626 (Ribosomal protein L39e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10360g00024.1	sp|A1L4Y2|ADHL3_ARATH	***-	Alcohol dehydrogenase-like 3	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02192g01015.1	sp|Q9LK09|SYP32_ARATH	***-	Syntaxin-32	IPR010989 (t-SNARE)	GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf09442g01007.1	sp|O80919|TBL34_ARATH	***-	Protein trichome birefringence-like 34	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf12262g00001.1	AT2G33170.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02207g05007.1	sp|Q0E2P1|2ABB_ORYSJ	*-**	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	IPR000009 (Protein phosphatase 2A, regulatory subunit PR55), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0000159 (protein phosphatase type 2A complex), GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf32862g01008.1	sp|Q9SZY4|PTR27_ARATH	*-*-	Protein NRT1/ PTR FAMILY 6.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf11581g02001.1	gb|ADV78030.1|	***-	cyclops, partial [Pteridium sp. BW-2011]	IPR014751 (DNA repair protein XRCC4, C-terminal)	GO:0003677 (DNA binding), GO:0006302 (double-strand break repair), GO:0006310 (DNA recombination)
Niben101Scf03224g09009.1	sp|P49972|SR542_SOLLC	*-*-	Signal recognition particle 54 kDa protein 2		
Niben101Scf04387g00001.1	emb|CDY19948.1|	*-*-	BnaA09g03030D [Brassica napus]	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf00820g07010.1	ref|NP_001047332.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAF09246.1| [Oryza sativa Japonica Group]		
Niben101Scf05857g00003.1	AT2G19460.1	***-	Protein of unknown function (DUF3511) LENGTH=116	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf07229g00010.1	sp|O14638|ENPP3_HUMAN	*-*-	Ectonucleotide pyrophosphatase/phosphodiesterase family member 3	IPR002591 (Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf02422g02018.1	AT1G64030.1	***-	serpin 3 LENGTH=385	IPR000215 (Serpin family), IPR023795 (Serpin, conserved site), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf03600g02020.1	sp|Q8W575|CSN3_ARATH	***-	COP9 signalosome complex subunit 3	IPR000717 (Proteasome component (PCI) domain)	GO:0005515 (protein binding)
Niben101Scf03736g00002.1	sp|Q2LR20|RL35_SYNAS	--*-	50S ribosomal protein L35	IPR021137 (Ribosomal protein L35)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10332g01011.1	AT3G45670.1	****	Protein kinase superfamily protein LENGTH=379	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01926g03001.1	emb|CDY24256.1|	***-	BnaC03g42290D [Brassica napus]		
Niben101Scf00370g02002.1	AT5G19090.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=587	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf04748g01012.1	ref|XP_007011630.1|	-***	DNA binding protein, putative isoform 1 [Theobroma cacao] gb|EOY29249.1| DNA binding protein, putative isoform 1 [Theobroma cacao]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf13600g01004.1	sp|P27492|CB21_TOBAC	***-	Chlorophyll a-b binding protein 16, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf04796g00031.1	AT5G55600.1	***-	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein LENGTH=663	IPR001025 (Bromo adjacent homology (BAH) domain), IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	GO:0003682 (chromatin binding)
Niben101Ctg15243g00002.1	sp|Q9SYC8|LPAT3_ARATH	*-*-	1-acyl-sn-glycerol-3-phosphate acyltransferase 3		
Niben101Scf02601g02008.1	sp|P42124|EZ_DROME	--**	Histone-lysine N-methyltransferase E(z)	IPR001214 (SET domain), IPR003105 (SRA-YDG), IPR007728 (Pre-SET domain), IPR015947 (PUA-like domain), IPR025794 (Histone H3-K9 methyltransferase, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016571 (histone methylation), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0042393 (histone binding)
Niben101Scf08326g00019.1	sp|Q3ZCG2|MPC1_BOVIN	****	Mitochondrial pyruvate carrier 1	IPR005336 (Mitochondrial pyruvate carrier)	GO:0005743 (mitochondrial inner membrane), GO:0006850 (mitochondrial pyruvate transport)
Niben101Scf05811g03003.1	sp|Q9WTL2|RAB25_MOUSE	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00234g01010.1	sp|Q6ZRY4|RBPS2_HUMAN	*-**	RNA-binding protein with multiple splicing 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07491g00003.1	sp|Q688M5|CHI9_ORYSJ	****	Chitinase 9	IPR016283 (Glycoside hydrolase, family 19), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process), GO:0008061 (chitin binding), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf04391g03001.1	ref|XP_007027122.1|	***-	Plant protein 1589 of Uncharacterized protein function [Theobroma cacao] gb|EOY07624.1| Plant protein 1589 of Uncharacterized protein function [Theobroma cacao]	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf01076g02013.1	AT4G01070.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf08446g01007.1	sp|B0R8D6|RPOB2_HALS3	*-**	DNA-directed RNA polymerase subunit B''	IPR007644 (RNA polymerase, beta subunit, protrusion), IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf02945g01004.1	AT4G16110.1	***-	response regulator 2 LENGTH=664	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01146g06011.1	sp|Q86H98|CHMP4_DICDI	***-	Charged multivesicular body protein 4	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf02125g00019.1			Unknown protein		
Niben101Scf00396g00013.1	sp|Q5YGP7|PLET2_ARATH	*-*-	AP2-like ethylene-responsive transcription factor PLT2		
Niben101Scf08504g02002.1	sp|Q01412|E13A_SOLLC	*-*-	Glucan endo-1,3-beta-glucosidase A	IPR000490 (Glycoside hydrolase, family 17)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07196g01001.1	sp|Q5YGP7|PLET2_ARATH	*-*-	AP2-like ethylene-responsive transcription factor PLT2		
Niben101Scf04396g03007.1	gb|AES82591.2|	*-*-	transducin/WD40 repeat protein [Medicago truncatula]		
Niben101Scf03263g04009.1	AT1G48910.1	****	Flavin-containing monooxygenase family protein LENGTH=383	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07554g01009.1	sp|Q28EX7|MARH2_XENTR	--*-	E3 ubiquitin-protein ligase MARCH2	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf02049g01002.1	sp|Q9LXT3|MBF1B_ARATH	***-	Multiprotein-bridging factor 1b	IPR010982 (Lambda repressor-like, DNA-binding domain), IPR013729 (Multiprotein bridging factor 1, N-terminal)	GO:0003677 (DNA binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04294g06042.1	sp|Q9XGM8|MGAT1_ARATH	****	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	IPR004139 (Glycosyl transferase, family 13), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0006486 (protein glycosylation), GO:0008375 (acetylglucosaminyltransferase activity)
Niben101Scf14102g01015.1	gb|AFA53102.1|	--*-	self-incompatibility S-locus F-box ZF3-2, partial [Solanum habrochaites]		
Niben101Scf08191g02007.1	sp|P08628|THIO_RABIT	*-*-	Thioredoxin	IPR011990 (Tetratricopeptide-like helical domain), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding), GO:0045454 (cell redox homeostasis)
Niben101Scf04742g02007.1	ref|XP_007015331.1|	***-	Dgd1 suppressor 1 isoform 2 [Theobroma cacao] gb|EOY32950.1| Dgd1 suppressor 1 isoform 2 [Theobroma cacao]		
Niben101Scf35628g00001.1	sp|P49107|PSAN_ARATH	****	Photosystem I reaction center subunit N, chloroplastic	IPR008796 (Photosystem I PsaN, reaction centre subunit N)	GO:0005516 (calmodulin binding), GO:0009522 (photosystem I), GO:0015979 (photosynthesis), GO:0042651 (thylakoid membrane)
Niben101Scf02221g04006.1	AT2G40120.1	*-**	Protein kinase superfamily protein LENGTH=570	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10438g02015.1	sp|Q9UHB4|NDOR1_HUMAN	--*-	NADPH-dependent diflavin oxidoreductase 1		
Niben101Scf04446g00027.1	ref|XP_007026070.1|	*-*-	Homer protein isoform 2 [Theobroma cacao] gb|EOY28692.1| Homer protein isoform 2 [Theobroma cacao]		
Niben101Scf03907g01017.1	AT4G22860.1	*-**	Cell cycle regulated microtubule associated protein LENGTH=509	IPR009675 (TPX2), IPR027330 (TPX2 central domain)	GO:0005819 (spindle), GO:0005874 (microtubule), GO:0007067 (mitotic nuclear division)
Niben101Scf00597g08022.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf05584g04007.1	sp|C1L2M7|RIMP_LISMC	--*-	Ribosome maturation factor RimP	IPR018790 (Protein of unknown function DUF2358)	
Niben101Scf02132g00027.1	sp|Q9SRH5|VDAC1_ARATH	****	Mitochondrial outer membrane protein porin 1	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0055085 (transmembrane transport)
Niben101Scf04998g01009.1	sp|O04893|AGLU_SPIOL	***-	Alpha-glucosidase	IPR000322 (Glycoside hydrolase family 31), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf00083g04026.1	AT4G38520.1	****	Protein phosphatase 2C family protein LENGTH=400	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf02772g07004.1	sp|Q6NPS8|NDOR1_ARATH	****	NADPH-dependent diflavin oxidoreductase 1	IPR001094 (Flavodoxin), IPR006924 (Ribosomal protein PSRP-3/Ycf65), IPR023173 (NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3), IPR029039 (Flavoprotein-like)	GO:0003735 (structural constituent of ribosome), GO:0003958 (NADPH-hemoprotein reductase activity), GO:0005506 (iron ion binding), GO:0005840 (ribosome), GO:0006412 (translation), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03883g05017.1	AT5G04730.1	*-*-	Ankyrin-repeat containing protein LENGTH=603	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	
Niben101Scf01048g00005.1	AT5G26780.3	****	serine hydroxymethyltransferase 2 LENGTH=533	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Ctg12648g00002.1	sp|Q9LT91|PER66_ARATH	*-**	Peroxidase 66	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01831g02006.1	AT5G57140.1	***-	purple acid phosphatase 28 LENGTH=397	IPR011230 (Phosphoesterase At2g46880), IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf02759g03006.1			Unknown protein		
Niben101Scf04184g00020.1			Unknown protein	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf07147g02013.1	emb|CDX75271.1|	*-*-	BnaA01g04310D [Brassica napus]		
Niben101Scf01241g01001.1			Unknown protein		
Niben101Scf12011g00003.1	AT2G17265.1	*-**	homoserine kinase LENGTH=370	IPR000870 (Homoserine kinase), IPR000932 (Photosystem antenna protein-like), IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0004413 (homoserine kinase activity), GO:0005524 (ATP binding), GO:0006566 (threonine metabolic process), GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf04388g02016.1	AT2G41810.1	***-	Protein of unknown function, DUF642 LENGTH=370	IPR006946 (Protein of unknown function DUF642), IPR008979 (Galactose-binding domain-like)	
Niben101Scf09345g00016.1	sp|F4IQJ4|GASAB_ARATH	***-	Gibberellin-regulated protein 11	IPR003854 (Gibberellin regulated protein)	
Niben101Scf05881g01004.1	sp|Q93Z81|CAX3_ARATH	***-	Vacuolar cation/proton exchanger 3	IPR004837 (Sodium/calcium exchanger membrane region)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf08931g00007.1	AT5G19650.1	*-*-	ovate family protein 8 LENGTH=221	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf09063g02002.1	sp|Q84WP3|REM17_ARATH	--*-	B3 domain-containing protein REM17		
Niben101Scf10287g01020.1			Unknown protein		
Niben101Scf20262g00004.1	AT5G42570.1	****	B-cell receptor-associated 31-like LENGTH=218	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf01642g03012.1	sp|Q570C0|TIR1_ARATH	***-	Protein TRANSPORT INHIBITOR RESPONSE 1	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf05014g00017.1	AT5G62600.1	***-	ARM repeat superfamily protein LENGTH=958	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf00983g04007.1	gb|ABF94719.1|	--*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf04099g03012.1	sp|Q5JME8|DI195_ORYSJ	***-	Protein DEHYDRATION-INDUCED 19 homolog 5	IPR008598 (Drought induced 19 protein-like, zinc-binding domain), IPR027935 (Protein dehydration-induced 19, C-terminal)	
Niben101Scf07058g01003.1			Unknown protein		
Niben101Scf03418g00002.1	ref|XP_007048399.1|	*-*-	GDP-mannose transporter, putative [Theobroma cacao] gb|EOX92556.1| GDP-mannose transporter, putative [Theobroma cacao]	IPR019379 (Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit)	
Niben101Scf14179g01001.1	sp|Q940G0|TMN1_ARATH	***-	Transmembrane 9 superfamily member 1	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf02375g06002.1	AT4G37790.1	*-*-	Homeobox-leucine zipper protein family LENGTH=278	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg11716g00002.1	sp|P56820|EIF3D_ARATH	****	Eukaryotic translation initiation factor 3 subunit D	IPR007783 (Eukaryotic translation initiation factor 3 subunit D)	GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf04557g03010.1	sp|Q9LDA9|CAF2P_ARATH	***-	CRS2-associated factor 2, chloroplastic	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf01750g06006.1	AT3G52060.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=346	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf04220g04002.1	sp|O23044|PER3_ARATH	****	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02798g02005.1	ref|YP_009091714.1|	***-	orf105 (mitochondrion) [Panax ginseng] gb|AHJ81036.1| orf105 (mitochondrion) [Panax ginseng]		
Niben101Scf04820g03003.1	ref|NP_001043856.1|	*-*-	product [Oryza sativa Japonica Group]	IPR021319 (Protein of unknown function DUF2921)	
Niben101Scf07981g00002.1	sp|Q8VCE1|DJC28_MOUSE	*-*-	DnaJ homolog subfamily C member 28	IPR018961 (DnaJ homologue, subfamily C, member 28, conserved domain)	
Niben101Scf20506g01005.1			Unknown protein		
Niben101Scf07875g00003.1	sp|P29429|THIO_EMENI	*-*-	Thioredoxin	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01941g02018.1	sp|F4JGZ1|MED16_ARATH	*-*-	Mediator of RNA polymerase II transcription subunit 16		
Niben101Scf02264g06031.1	AT1G65790.1	*-*-	receptor kinase 1 LENGTH=843		
Niben101Scf02564g04009.1	emb|CDY25634.1|	*-*-	BnaA04g13260D [Brassica napus]		
Niben101Scf01326g11039.1	AT5G40020.1	***-	Pathogenesis-related thaumatin superfamily protein LENGTH=256	IPR001938 (Thaumatin)	
Niben101Scf03848g05008.1	sp|Q9FLF4|PUB27_ARATH	***-	U-box domain-containing protein 27	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf01623g10010.1	ref|XP_002515316.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF47300.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03329g02001.1	sp|Q6ID18|LAC10_ARATH	*-*-	Laccase-10	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03628g14017.1	AT2G31040.1	***-	ATP synthase protein I -related LENGTH=350		
Niben101Scf04526g00011.1	sp|Q6YZA9|GL82_ORYSJ	***-	Germin-like protein 8-2	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf04445g01002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf01561g01010.1	sp|P40012|PPOX_YEAST	--*-	Protoporphyrinogen oxidase		
Niben101Scf01153g00015.1	sp|O82201|AP4S_ARATH	***-	AP-4 complex subunit sigma	IPR016635 (Adaptor protein complex, sigma subunit)	GO:0006810 (transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport)
Niben101Scf04032g00002.1	gb|AAO72598.1|	***-	myosin-like protein [Oryza sativa Japonica Group] gb|AAO72684.1| putative myosin heavy chain [Oryza sativa Japonica Group]		
Niben101Scf11334g00001.1	ref|WP_026731178.1|	--*-	acetoacetate decarboxylase [Fischerella sp. PCC 9605]		
Niben101Scf07578g00023.1	dbj|GAA29300.2|	--*-	leucine-rich repeat-containing protein 4 [Clonorchis sinensis]		
Niben101Ctg16351g00002.1	sp|Q43735|PER27_ARATH	****	Peroxidase 27	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00961g03002.1	AT4G32760.2	***-	ENTH/VHS/GAT family protein LENGTH=676	IPR008942 (ENTH/VHS)	GO:0006886 (intracellular protein transport)
Niben101Scf00504g06007.1	AT1G03520.1	*-**	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=447	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf09549g01001.1	sp|Q6IP65|RCD1_XENLA	***-	Cell differentiation protein RCD1 homolog	IPR007216 (Rcd1), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf08855g00008.1	AT1G73260.1	****	kunitz trypsin inhibitor 1 LENGTH=215	IPR002160 (Proteinase inhibitor I3, Kunitz legume)	GO:0004866 (endopeptidase inhibitor activity)
Niben101Scf15022g00015.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00854g10031.1	sp|B4RD45|ATPA_PHEZH	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf08447g01020.1	sp|P0C1I1|PPID_RHIO9	*-*-	Peptidyl-prolyl cis-trans isomerase D	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR011990 (Tetratricopeptide-like helical domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0005515 (protein binding), GO:0006457 (protein folding)
Niben101Ctg13566g00004.1	ref|XP_003593477.1|	*-*-	Lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf02210g01002.1	AT5G13180.1	***-	NAC domain containing protein 83 LENGTH=252	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02329g01002.1	sp|Q71XG3|FABH_LISMF	***-	3-oxoacyl-[acyl-carrier-protein] synthase 3	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00620g00002.1	sp|Q9LNT9|ASK4_ARATH	***-	SKP1-like protein 4	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf04797g00029.1	sp|P30181|TOP1_ARATH	*-**	DNA topoisomerase 1	IPR001631 (DNA topoisomerase I), IPR013499 (DNA topoisomerase I, eukaryotic-type), IPR025834 (Topoisomerase I C-terminal domain)	GO:0003677 (DNA binding), GO:0003917 (DNA topoisomerase type I activity), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0005694 (chromosome), GO:0006265 (DNA topological change)
Niben101Scf00360g03014.1	sp|A9WB97|GAL1_CHLAA	*-*-	Galactokinase	IPR006206 (Mevalonate/galactokinase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf01684g03001.1	sp|B6SGC5|CNR6_MAIZE	***-	Cell number regulator 6	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf07532g02009.1	AT1G12310.1	****	Calcium-binding EF-hand family protein LENGTH=148	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00797g20013.1	AT1G17410.1	****	Nucleoside diphosphate kinase family protein LENGTH=181	IPR001564 (Nucleoside diphosphate kinase)	GO:0004550 (nucleoside diphosphate kinase activity), GO:0005524 (ATP binding), GO:0006165 (nucleoside diphosphate phosphorylation), GO:0006183 (GTP biosynthetic process), GO:0006228 (UTP biosynthetic process), GO:0006241 (CTP biosynthetic process)
Niben101Scf16068g00005.1	AT3G25640.1	***-	Protein of unknown function, DUF617 LENGTH=267	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf02929g06044.1			Unknown protein		
Niben101Scf01394g00006.1	gb|KEH44339.1|	--*-	inactive poly [ADP-ribose] polymerase RCD1 [Medicago truncatula]		
Niben101Scf01239g03008.1	sp|A7QEU4|PER5_VITVI	****	Peroxidase 5	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf12389g00006.1	sp|P56902|FABF_RHIME	***-	3-oxoacyl-[acyl-carrier-protein] synthase 2	IPR017568 (3-oxoacyl-[acyl-carrier-protein] synthase 2), IPR020841 (Polyketide synthase, beta-ketoacyl synthase domain)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf05711g02008.1	sp|Q10PP8|MTP4_ORYSJ	***-	Metal tolerance protein 4	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain), IPR027470 (Cation efflux protein cytoplasmic domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02221g02001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf20652g01005.1	sp|Q9FXH7|SRS7_ARATH	*-*-	Protein SHI RELATED SEQUENCE 7	IPR007818 (Protein of unknown function DUF702)	
Niben101Scf04951g02003.1	gb|ACE79436.1|	***-	NBS-coding resistance gene analog [Nicotiana tabacum]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf02606g03010.1	gb|KEH42956.1|	*-*-	R3H domain protein [Medicago truncatula]	IPR024771 (SUZ domain)	
Niben101Scf01623g01025.1	sp|O81416|GUN17_ARATH	***-	Endoglucanase 17	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06009g00024.1	AT4G11400.1	*-*-	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=573		
Niben101Scf00159g08005.1	sp|Q9LUB9|Y5813_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf19133g01003.1	AT5G42140.1	***-	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain LENGTH=1073	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR011993 (Pleckstrin homology-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013591 (Brevis radix (BRX) domain), IPR027988 (Transcription factor  BREVIS RADIX, N-terminal domain)	GO:0046872 (metal ion binding)
Niben101Scf13523g00010.1	sp|Q8L838|COG4_ARATH	***-	Conserved oligomeric Golgi complex subunit 4	IPR013167 (Conserved oligomeric Golgi complex, subunit 4)	
Niben101Scf11557g03004.1	AT2G28085.1	***-	SAUR-like auxin-responsive protein family LENGTH=124	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf06757g00006.1	sp|Q9FFI5|NAC86_ARATH	***-	NAC domain-containing protein 86	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03820g02010.1	gb|KEH36135.1|	****	metalloendopeptidase/zinc ion-binding protein [Medicago truncatula]	IPR000742 (Epidermal growth factor-like domain), IPR001577 (Peptidase M8, leishmanolysin), IPR020067 (Frizzled domain)	GO:0004222 (metalloendopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis), GO:0007155 (cell adhesion), GO:0016020 (membrane)
Niben101Scf05453g00001.1	AT3G61200.1	*-*-	Thioesterase superfamily protein LENGTH=188	IPR029069 (HotDog domain)	
Niben101Scf01337g06006.1	AT2G39980.1	****	HXXXD-type acyl-transferase family protein LENGTH=482	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf15067g04002.1	AT4G00730.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=802	IPR002913 (START domain)	GO:0008289 (lipid binding)
Niben101Scf00272g04001.1	gb|ADV29952.1|	*-*-	MYB transcription factor MIXTA-like 8 protein, partial [Erythranthe guttata]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf09741g00010.1	sp|P82381|ICI_LINUS	*-**	Proteinase inhibitor	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding)
Niben101Scf00905g15003.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01992g01013.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02361g05004.1	sp|Q9UBC3|DNM3B_HUMAN	*-**	DNA (cytosine-5)-methyltransferase 3B	IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006306 (DNA methylation)
Niben101Scf00271g08008.1	sp|B9I534|CASP6_POPTR	*-*-	Casparian strip membrane protein 6	IPR005735 (Zinc finger, LSD1-type), IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Ctg03201g00001.1	AT1G07520.1	*-*-	GRAS family transcription factor LENGTH=695	IPR005202 (Transcription factor GRAS)	
Niben101Scf04742g00004.1	sp|Q8C3F7|KLH30_MOUSE	*-*-	Kelch-like protein 30	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf08011g02012.1	sp|Q28FH2|NTKL_XENTR	*-*-	N-terminal kinase-like protein	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf05621g02011.1	sp|Q3T134|SPCS1_BOVIN	****	Signal peptidase complex subunit 1	IPR009542 (Microsomal signal peptidase 12kDa subunit)	GO:0005787 (signal peptidase complex), GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf02890g00010.1	AT1G13510.1	*-*-	Protein of unknown function (DUF1262) LENGTH=380		
Niben101Scf00552g00004.1	sp|O04514|OPT2_ARATH	*-*-	Oligopeptide transporter 2	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf11515g02005.1	sp|Q6YXH8|CCD41_ORYSJ	***-	Cyclin-D4-1	IPR013763 (Cyclin-like)	
Niben101Scf00568g02004.1	sp|Q32P99|UBE2B_BOVIN	***-	Ubiquitin-conjugating enzyme E2 B	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf05157g04007.1	sp|B9K6U6|GLMM_THENN	--*-	Phosphoglucosamine mutase		
Niben101Scf10248g01018.1	sp|Q9M7K4|POT5_ARATH	****	Potassium transporter 5	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf03634g13003.1	emb|CDY72642.1|	*-*-	BnaAnng41820D [Brassica napus]		
Niben101Scf02045g05005.1	sp|Q9FIX3|PP407_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08447g02004.1	sp|Q9SSK9|MLP28_ARATH	***-	MLP-like protein 28	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Ctg14374g00002.1	AT4G19670.1	***-	RING/U-box superfamily protein LENGTH=532	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf11856g00005.1	ref|XP_007022137.1|	-**-	Heat stress transcription factor B-4b, putative [Theobroma cacao] gb|EOY13662.1| Heat stress transcription factor B-4b, putative [Theobroma cacao]		
Niben101Scf08149g00031.1	AT4G17720.1	***-	RNA-binding (RRM/RBD/RNP motifs) family protein LENGTH=313		
Niben101Scf01696g06031.1	sp|O34392|YTRE_BACSU	-***	ABC transporter ATP-binding protein YtrE	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf03222g04001.1	sp|B1VS80|GPMA_STRGG	--*-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	IPR001345 (Phosphoglycerate/bisphosphoglycerate mutase, active site), IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00705g02006.1	sp|P70389|ALS_MOUSE	--**	Insulin-like growth factor-binding protein complex acid labile subunit	IPR001611 (Leucine-rich repeat), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf08566g04016.1	sp|C1EYK0|ATKB_BACC3	*-*-	Potassium-transporting ATPase B chain	IPR008250 (P-type ATPase, A  domain), IPR018303 (P-type ATPase, phosphorylation site), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0046872 (metal ion binding)
Niben101Scf06132g00004.1	sp|Q94AH6|CUL1_ARATH	*-**	Cullin-1	IPR001373 (Cullin, N-terminal)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf01968g01041.1	ref|WP_025098822.1|	*-*-	ABC transporter substrate-binding protein [Burkholderia sp. A1]	IPR010839 (Protein of unknown function DUF1446)	
Niben101Scf01789g03005.1	sp|Q01149|CO1A2_MOUSE	*-*-	Collagen alpha-2(I) chain		
Niben101Scf19295g00015.1	sp|Q2VEI5|RPOC1_SOLTU	*-*-	DNA-directed RNA polymerase subunit beta'		
Niben101Scf03437g01014.1	AT5G57800.1	****	Fatty acid hydroxylase superfamily LENGTH=632	IPR006694 (Fatty acid hydroxylase), IPR016040 (NAD(P)-binding domain), IPR021940 (Uncharacterised domain Wax2, C-terminal)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10650g02016.1	sp|Q9SEK2|HXK1_TOBAC	****	Hexokinase-1	IPR001312 (Hexokinase)	GO:0004396 (hexokinase activity), GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0006096 (glycolytic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf02452g04012.1			Unknown protein		
Niben101Scf01568g01024.1	sp|Q089P5|RS17_SHEFN	-**-	30S ribosomal protein S17	IPR000266 (Ribosomal protein S17), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf16812g01018.1	gb|AES82481.2|	*-**	MTA3-Myb-like DNA-binding domain protein, putative [Medicago truncatula]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf11453g02015.1	sp|Q8VWK4|TRB1_ARATH	****	Telomere repeat-binding factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Ctg16285g00001.1	gb|ABJ99598.1|	--*-	NBS-LRR type resistance protein [Beta vulgaris]		
Niben101Scf00360g01005.1	sp|Q9M3V8|RS6_ASPOF	***-	40S ribosomal protein S6	IPR001377 (Ribosomal protein S6e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01218g01007.1	sp|O55012|PICAL_RAT	*-**	Phosphatidylinositol-binding clathrin assembly protein	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf05201g06001.1	sp|Q2LVI3|PYRC_SYNAS	***-	Dihydroorotase	IPR011778 (Hydantoinase/dihydropyrimidinase)	GO:0005737 (cytoplasm), GO:0006208 (pyrimidine nucleobase catabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds), GO:0016812 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides)
Niben101Scf03202g12003.1	sp|P70168|IMB1_MOUSE	*-*-	Importin subunit beta-1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf12159g01006.1	ref|XP_002535202.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF27181.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03239g00001.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06183g03003.1	sp|A7X2H6|UBIE_STAA1	****	Demethylmenaquinone methyltransferase	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf22589g00001.1	AT5G57800.1	****	Fatty acid hydroxylase superfamily LENGTH=632	IPR006694 (Fatty acid hydroxylase), IPR021940 (Uncharacterised domain Wax2, C-terminal)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf14394g01038.1	sp|Q07866|KLC1_HUMAN	*-*-	Kinesin light chain 1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06207g01008.1	AT4G16110.1	*-*-	response regulator 2 LENGTH=664	IPR001789 (Signal transduction response regulator, receiver domain), IPR008896 (Uncharacterised protein family Ycf1), IPR009057 (Homeodomain-like)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding)
Niben101Scf03365g02002.1	sp|Q4KLU2|PRP39_XENLA	****	Pre-mRNA-processing factor 39	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Scf12410g00014.1	sp|Q9SLB6|LBD17_ARATH	*-*-	LOB domain-containing protein 17	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf08127g01015.1	sp|Q01664|TFAP4_HUMAN	--*-	Transcription factor AP-4	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04139g00009.1	AT1G29820.1	****	Magnesium transporter CorA-like family protein LENGTH=540	IPR002523 (Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf05405g09001.1	sp|B6CJY4|TRAF6_CERAT	*-*-	TNF receptor-associated factor 6	IPR008974 (TRAF-like)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf03350g09018.1	sp|Q49AM1|MTEF2_HUMAN	--**	Transcription termination factor 2, mitochondrial	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02469g00014.1	AT2G37420.1	*-**	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf08665g02008.1	ref|XP_003621359.1|	*-*-	Ripening-related protein [Medicago truncatula]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf02936g04013.1	emb|CDY22603.1|	***-	BnaC08g42370D [Brassica napus]	IPR016972 (Uncharacterised conserved protein UCP031279)	
Niben101Scf08791g03011.1	sp|Q38741|SBP1_ANTMA	****	Squamosa promoter-binding protein 1	IPR017238 (Squamosa promoter-binding protein)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf05387g12004.1	sp|Q5FVJ8|SENP8_RAT	--*-	Sentrin-specific protease 8	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf03830g03015.1	sp|Q9SX26|PCR12_ARATH	***-	Protein PLANT CADMIUM RESISTANCE 12	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf01626g04008.1	sp|Q6L545|GID1_ORYSJ	***-	Gibberellin receptor GID1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf04044g13018.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf00369g10007.1	ref|XP_002519967.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF42415.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03225g00009.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02740g06001.1	sp|Q6IRP4|ABHDD_XENLA	***-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03628g08003.1	sp|Q9CR95|NECP1_MOUSE	***-	Adaptin ear-binding coat-associated protein 1	IPR011993 (Pleckstrin homology-like domain), IPR012466 (Adaptin ear-binding coat-associated protein 1 NECAP-1)	GO:0006897 (endocytosis), GO:0016020 (membrane)
Niben101Scf03028g04008.1	sp|B8HMQ7|RL2_CYAP4	--*-	50S ribosomal protein L2	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07242g07006.1	AT3G28740.1	***-	Cytochrome P450 superfamily protein LENGTH=509	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06942g02026.1	sp|Q57PR2|SUFS_SALCH	*-*-	Cysteine desulfurase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf11802g02006.1	sp|Q089P5|RS17_SHEFN	-**-	30S ribosomal protein S17	IPR000266 (Ribosomal protein S17), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01448g02004.1	sp|Q9LVX1|C3H41_ARATH	***-	Zinc finger CCCH domain-containing protein 41	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf08044g00001.1	AT5G24620.1	***-	Pathogenesis-related thaumatin superfamily protein LENGTH=420	IPR001938 (Thaumatin)	
Niben101Scf11581g00001.1	sp|Q9CA23|UFM1_ARATH	***-	Ubiquitin-fold modifier 1	IPR005375 (Ubiquitin-fold modifier 1), IPR029071 (Ubiquitin-related domain)	
Niben101Scf00973g01002.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf12103g00011.1	AT3G06483.1	***-	pyruvate dehydrogenase kinase LENGTH=366	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR005467 (Signal transduction histidine kinase, core), IPR018955 (Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase, N-terminal)	
Niben101Scf00560g12011.1	sp|Q08069|RS8_MAIZE	***-	40S ribosomal protein S8	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09442g01005.1	AT4G35690.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=284	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf07463g01017.1	AT5G16010.1	***-	3-oxo-5-alpha-steroid 4-dehydrogenase family protein LENGTH=268		
Niben101Scf01409g00003.1	AT3G02645.1	*-*-	Plant protein of unknown function (DUF247) LENGTH=529	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf03438g04006.1	gb|KEH38523.1|	*-*-	PPR containing protein, putative [Medicago truncatula]		
Niben101Scf02819g05022.1	AT4G35160.1	****	O-methyltransferase family protein LENGTH=382	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity)
Niben101Scf03121g02005.1	sp|A6X546|GLMU_OCHA4	--*-	Bifunctional protein GlmU		
Niben101Scf03580g01005.1	sp|Q39117|TGT2_ARATH	*-*-	Trihelix transcription factor GT-2	IPR001005 (SANT/Myb domain)	GO:0003682 (chromatin binding)
Niben101Scf03918g00008.1	emb|CDX85640.1|	*-*-	BnaA02g01730D [Brassica napus]		
Niben101Scf03114g00001.1	sp|Q06327|LOX1_ARATH	*-*-	Linoleate 9S-lipoxygenase 1	IPR000907 (Lipoxygenase)	GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01556g03005.1	sp|Q9P429|AOX_VENIN	*-**	Alternative oxidase, mitochondrial	IPR002680 (Alternative oxidase)	GO:0009916 (alternative oxidase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02114g00010.1	sp|P49420|DHAS_PROMA	****	Aspartate-semialdehyde dehydrogenase	IPR012080 (Aspartate-semialdehyde dehydrogenase), IPR016040 (NAD(P)-binding domain)	GO:0003942 (N-acetyl-gamma-glutamyl-phosphate reductase activity), GO:0004073 (aspartate-semialdehyde dehydrogenase activity), GO:0005737 (cytoplasm), GO:0008652 (cellular amino acid biosynthetic process), GO:0009086 (methionine biosynthetic process), GO:0009088 (threonine biosynthetic process), GO:0009089 (lysine biosynthetic process via diaminopimelate), GO:0009097 (isoleucine biosynthetic process), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0046983 (protein dimerization activity), GO:0050661 (NADP binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05371g06002.1	ref|XP_002529976.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF32419.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05629g01014.1	ref|XP_002531572.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF30808.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05118g00001.1	sp|Q9LE59|GAUT1_ARATH	*-*-	Polygalacturonate 4-alpha-galacturonosyltransferase		
Niben101Scf07935g02010.1	sp|Q94JM3|ARFB_ARATH	*-**	Auxin response factor 2	IPR010525 (Auxin response factor)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone)
Niben101Scf38631g00002.1			Unknown protein	IPR003656 (Zinc finger, BED-type)	GO:0003677 (DNA binding)
Niben101Scf02525g07007.1	sp|Q5A4W8|BDF1_CANAL	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf02915g06019.1			Unknown protein		
Niben101Scf01775g01019.1	sp|P33530|PHYA1_TOBAC	***-	Phytochrome A1	IPR001294 (Phytochrome), IPR005467 (Signal transduction histidine kinase, core), IPR029016 (GAF domain-like)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0007165 (signal transduction), GO:0009584 (detection of visible light), GO:0009585 (red, far-red light phototransduction), GO:0009881 (photoreceptor activity), GO:0016020 (membrane), GO:0017006 (protein-tetrapyrrole linkage), GO:0018298 (protein-chromophore linkage), GO:0042803 (protein homodimerization activity)
Niben101Scf17482g00014.1	sp|Q03194|PMA4_NICPL	****	Plasma membrane ATPase 4	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf04424g03004.1	sp|P18694|HSP72_USTMA	*-*-	Heat shock 70 kDa protein 2	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf01584g00007.1	emb|CDY60513.1|	*-*-	BnaC04g54240D [Brassica napus]	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Scf06245g01019.1	sp|O49118|H2B_CAPAN	*-*-	Histone H2B	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf02618g03012.1	sp|Q9SV13|SUT31_ARATH	****	Sulfate transporter 3.1	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf05652g00009.1	ref|XP_002510332.1|	****	zinc ion binding protein, putative [Ricinus communis] gb|EEF52519.1| zinc ion binding protein, putative [Ricinus communis]	IPR001781 (Zinc finger, LIM-type), IPR003903 (Ubiquitin interacting motif), IPR022087 (Protein DA1 like)	GO:0008270 (zinc ion binding)
Niben101Scf00966g00009.1	sp|O18956|ENTP1_BOVIN	***-	Ectonucleoside triphosphate diphosphohydrolase 1	IPR000407 (Nucleoside phosphatase GDA1/CD39)	GO:0016787 (hydrolase activity)
Niben101Scf00916g01007.1	sp|Q9SIQ9|VA712_ARATH	****	Vesicle-associated membrane protein 712	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf02942g00020.1	emb|CDY44410.1|	*-*-	BnaA02g29670D [Brassica napus]		
Niben101Scf02509g12008.1	gb|AES68730.2|	***-	DUF3128 family protein [Medicago truncatula]	IPR021475 (Protein of unknown function DUF3128)	
Niben101Scf02283g00005.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05049g00007.1	gb|KEH23932.1|	--*-	ENTH/VHS/GAT family protein [Medicago truncatula]		
Niben101Scf02366g01006.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf22885g00004.1	AT5G58520.1	***-	Protein kinase superfamily protein LENGTH=604		
Niben101Scf09792g00022.1	AT2G33460.1	*-*-	ROP-interactive CRIB motif-containing protein 1 LENGTH=224	IPR000095 (CRIB domain)	
Niben101Scf00398g06013.1			Unknown protein		
Niben101Scf04684g01006.1	ref|XP_006384993.1|	*-*-	bZIP family transcription factor family protein [Populus trichocarpa] gb|ERP62790.1| bZIP family transcription factor family protein [Populus trichocarpa]		
Niben101Scf08835g00014.1	AT3G11340.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=447	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02929g05015.1	sp|Q5F618|NUOD_NEIG1	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00326g00003.1	AT4G16380.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=254	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf04361g00012.1	AT1G55190.1	*-*-	PRA1 (Prenylated rab acceptor) family protein LENGTH=189	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf17430g00010.1			Unknown protein		
Niben101Scf16022g01008.1	sp|Q9LN94|EXPA7_ARATH	***-	Expansin-A7	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf05853g00002.1	sp|Q4V7B8|RNF44_RAT	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02045g04001.1	sp|Q43383|ACCH5_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 5	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf10412g02016.1	AT4G11800.1	***-	Calcineurin-like metallo-phosphoesterase superfamily protein LENGTH=1013	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf00298g00004.1	sp|Q9H361|PABP3_HUMAN	*-**	Polyadenylate-binding protein 3	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02585g00001.1	sp|Q8L8Q3|LBD25_ARATH	***-	LOB domain-containing protein 25	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf01062g07001.1	ref|WP_019301163.1|	*-*-	endonuclease [Xanthomonas oryzae]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf01285g03009.1	sp|Q84WM0|RL292_ARATH	*-*-	60S ribosomal protein L29-2	IPR002673 (Ribosomal protein L29e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10122g01006.1	AT1G30820.1	****	CTP synthase family protein LENGTH=600	IPR004468 (CTP synthase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003883 (CTP synthase activity), GO:0006221 (pyrimidine nucleotide biosynthetic process)
Niben101Scf09075g02003.1	AT4G37790.1	***-	Homeobox-leucine zipper protein family LENGTH=278	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04907g01014.1	sp|Q04W40|AROC_LEPBJ	****	Chorismate synthase	IPR000453 (Chorismate synthase)	GO:0004107 (chorismate synthase activity), GO:0009073 (aromatic amino acid family biosynthetic process)
Niben101Scf03350g06021.1	AT1G22610.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1029	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf02125g01002.1			Unknown protein		
Niben101Scf01866g00005.1			Unknown protein		
Niben101Scf00705g02001.1	sp|Q40392|TMVRN_NICGU	--*-	TMV resistance protein N	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf05829g00018.1	ref|XP_002532208.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF30177.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02237g03007.1	sp|Q27GI3|NAT6_ARATH	*-**	Nucleobase-ascorbate transporter 6	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03313g00021.1	sp|O49561|G2OX8_ARATH	***-	Gibberellin 2-beta-dioxygenase 8	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf22424g01016.1	gb|ACG36064.1|	***-	kinesin-like protein [Zea mays]		
Niben101Scf15435g00012.1	sp|Q39013|NAC2_ARATH	***-	NAC domain-containing protein 2	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01980g00014.1	sp|Q8GWJ6|MUB6_ARATH	***-	Membrane-anchored ubiquitin-fold protein 6	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf03104g02010.1	ref|XP_002518509.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF43896.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01976g00013.1	AT5G54370.1	***-	Late embryogenesis abundant (LEA) protein-related LENGTH=337	IPR009646 (Root cap)	
Niben101Scf01494g01007.1	sp|Q0WPE9|NAT7_ARATH	****	Nucleobase-ascorbate transporter 7	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf10920g01032.1	sp|Q8WVE0|N6MT2_HUMAN	****	N(6)-adenine-specific DNA methyltransferase 2	IPR019369 (DNA methylase, N-6 adenine-specific, eukaryotic)	GO:0003676 (nucleic acid binding), GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf00271g01019.1	AT1G31300.1	***-	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein LENGTH=278	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf03764g01005.1	ref|NP_001176094.1|	--*-	[Oryza sativa Japonica Group] dbj|BAH94822.1| [Oryza sativa Japonica Group]		
Niben101Scf02752g00016.1	sp|Q9JK24|P2R3C_MOUSE	***-	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf06910g01001.1	emb|CDY20517.1|	*-*-	BnaC04g05270D [Brassica napus]		
Niben101Scf03735g07010.1	sp|Q40585|VATL_TOBAC	****	V-type proton ATPase 16 kDa proteolipid subunit	IPR000245 (V-ATPase proteolipid subunit), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf04113g07012.1	AT2G21610.1	****	pectinesterase 11 LENGTH=352	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf00494g00002.1			Unknown protein		
Niben101Scf05618g02002.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf03147g07004.1	ref|XP_002534451.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF27931.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf13002g03013.1	sp|Q9FDZ9|RL212_ARATH	***-	60S ribosomal protein L21-2	IPR001147 (Ribosomal protein L21e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02334g00004.1	sp|Q9T065|1A18_ARATH	***-	1-aminocyclopropane-1-carboxylate synthase 8	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02156g14028.1	sp|Q5TC12|ATPF1_HUMAN	*-**	ATP synthase mitochondrial F1 complex assembly factor 1	IPR010591 (ATP11)	GO:0005739 (mitochondrion), GO:0006461 (protein complex assembly)
Niben101Scf05849g00002.1	sp|Q40479|ERF2_TOBAC	*-**	Ethylene-responsive transcription factor 2	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04784g05009.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR001878 (Zinc finger, CCHC-type), IPR007527 (Zinc finger, SWIM-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf05553g04002.1	sp|Q9BTD8|RBM42_HUMAN	*-**	RNA-binding protein 42	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00288g06007.1	AT5G58450.1	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=1065		
Niben101Scf02973g00003.1	emb|CDY64137.1|	--*-	BnaCnng43230D [Brassica napus]		
Niben101Scf01210g00019.1	sp|Q21CY5|ATPA_RHOPB	*-**	ATP synthase subunit alpha	IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf13029g01017.1	gb|KEH43438.1|	*-*-	XS domain protein [Medicago truncatula]		
Niben101Scf12680g03011.1			Unknown protein		
Niben101Ctg13781g00001.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00466g04001.1	sp|P42792|CYB_ARATH	*-*-	Cytochrome b		
Niben101Scf05047g00007.1	sp|Q58E26|TMX2_XENLA	***-	Thioredoxin-related transmembrane protein 2		
Niben101Scf09489g00001.1	sp|Q6ZMW2|ZN782_HUMAN	*-*-	Zinc finger protein 782	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00996g00011.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00905g10005.1	emb|CDY18986.1|	--*-	BnaC01g20820D [Brassica napus]		
Niben101Scf04827g04011.1	AT1G09320.1	***-	agenet domain-containing protein LENGTH=517	IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf03188g07004.1	gb|AFV66580.1|	***-	LSG [Saccharum hybrid cultivar]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf07951g02030.1	sp|O65420|VAL3_ARATH	*-*-	B3 domain-containing transcription factor VAL3		
Niben101Scf08653g04010.1	AT2G01190.1	*-*-	Octicosapeptide/Phox/Bem1p family protein LENGTH=720	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf06590g03003.1	sp|Q71V09|H4_CAPAN	***-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	
Niben101Scf02740g04012.1	AT4G12570.1	****	ubiquitin protein ligase 5 LENGTH=873	IPR000569 (HECT), IPR029071 (Ubiquitin-related domain)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding)
Niben101Scf01343g00015.1	ref|XP_007030875.1|	***-	HSP20-like chaperones superfamily protein isoform 2 [Theobroma cacao] gb|EOY11377.1| HSP20-like chaperones superfamily protein isoform 2 [Theobroma cacao]	IPR008978 (HSP20-like chaperone)	
Niben101Scf07184g05001.1	ref|XP_002519275.1|	*-**	hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gb|EEF43139.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01214g01004.1	sp|O23086|ALMTA_ARATH	*-**	Aluminum-activated malate transporter 10	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf09541g00004.1	sp|A6QLU8|NXN_BOVIN	*-*-	Nucleoredoxin	IPR012336 (Thioredoxin-like fold)	
Niben101Scf07423g03013.1	AT1G29500.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf06050g03003.1	sp|Q55BV5|PRS4_DICDI	*-*-	26S protease regulatory subunit 4 homolog	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01841g01002.1	sp|Q9LSL9|PP445_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02122g01014.1	AT1G11050.1	****	Protein kinase superfamily protein LENGTH=625	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00854g11101.1	sp|Q3V554|PSBA_ACOCL	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf06955g04016.1			Unknown protein		
Niben101Scf04236g00019.1	sp|Q9LXT3|MBF1B_ARATH	***-	Multiprotein-bridging factor 1b	IPR010982 (Lambda repressor-like, DNA-binding domain), IPR013729 (Multiprotein bridging factor 1, N-terminal)	GO:0003677 (DNA binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03565g02014.1	sp|Q9W0I6|SAC1_DROME	*-*-	Phosphatidylinositide phosphatase SAC1	IPR002013 (SAC domain)	GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf00057g00034.1	AT5G10460.1	***-	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=306	IPR006357 (HAD-superfamily hydrolase, subfamily IIA), IPR023214 (HAD-like domain)	
Niben101Scf01339g06015.1	sp|O23970|GPX1_HELAN	****	Glutathione peroxidase 1	IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029759 (Glutathione peroxidase active site), IPR029760 (Glutathione peroxidase conserved site)	GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process)
Niben101Scf03548g02007.1	sp|Q9DC53|CPNE8_MOUSE	***-	Copine-8	IPR000008 (C2 domain), IPR002035 (von Willebrand factor, type A), IPR010734 (Copine)	GO:0005515 (protein binding)
Niben101Scf01409g03004.1	sp|Q09GJ9|CRVP_PHIOL	*-*-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf01478g02007.1	sp|P93039|NAT4_ARATH	*-**	Nucleobase-ascorbate transporter 4	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02502g10021.1	sp|Q9LVQ0|PME31_ARATH	****	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf00854g10036.1	ref|XP_002535856.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf14323g01023.1	sp|B7UMH2|YIDC_ECO27	*-**	Membrane protein insertase YidC	IPR001708 (Membrane insertase OXA1/ALB3/YidC), IPR028055 (Membrane insertase YidC/Oxa1, C-terminal)	GO:0016021 (integral component of membrane), GO:0051205 (protein insertion into membrane)
Niben101Scf01497g04006.1	AT4G35730.1	*-*-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=466	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf04569g00007.1			Unknown protein		
Niben101Scf03309g04007.1	gb|AAY54607.1|	***-	truncated NRG1 [Nicotiana benthamiana]		
Niben101Scf04783g09004.1	sp|A8SED5|RPOA_CERDE	*-**	DNA-directed RNA polymerase subunit alpha	IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain)	GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf31181g00005.1	sp|Q9SLN1|FPP7_ARATH	*-*-	Filament-like plant protein 7	IPR008587 (Filament-like plant protein)	
Niben101Scf08566g04011.1	sp|Q8W4F0|DAR1_ARATH	*-*-	Protein DA1-related 1	IPR022087 (Protein DA1 like)	
Niben101Scf07182g05015.1	sp|P27320|FER_SYNY3	***-	Ferredoxin-1	IPR010241 (Ferredoxin [2Fe-2S], plant), IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0022900 (electron transport chain), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf01304g08015.1	sp|Q6CEJ6|CCR4_YARLI	*-*-	Glucose-repressible alcohol dehydrogenase transcriptional effector	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf04071g02001.1	AT5G13020.1	***-	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein LENGTH=397	IPR005491 (EMSY N-terminal)	
Niben101Scf13982g00005.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03113g02012.1	sp|P41101|RL27_SOLTU	***-	60S ribosomal protein L27	IPR001141 (Ribosomal protein L27e), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00415g04006.1			Unknown protein		
Niben101Scf37767g00003.1	AT3G04620.1	*-**	Alba DNA/RNA-binding protein LENGTH=164	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Scf02725g04002.1			Unknown protein		
Niben101Scf01538g04013.1	ref|XP_007010390.1|	*-*-	Retrotransp [Theobroma cacao]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf14144g00021.1	sp|Q9FYQ8|TMN11_ARATH	*-*-	Transmembrane 9 superfamily member 11	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf00709g03002.1	sp|P40283|H2B11_ARATH	*-*-	Histone H2B.11	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf02203g03016.1	ref|WP_003870695.1|	***-	RNA-directed DNA polymerase [Thermoanaerobacter ethanolicus] gb|EGD51276.1| RNA-directed DNA polymerase (Reverse transcriptase) [Thermoanaerobacter ethanolicus JW 200]	IPR000477 (Reverse transcriptase domain)	
Niben101Scf01154g00002.1	AT1G30800.1	*-*-	Fasciclin-like arabinogalactan family protein LENGTH=239	IPR000782 (FAS1 domain)	
Niben101Scf01740g14003.1	sp|Q96FN4|CPNE2_HUMAN	***-	Copine-2	IPR000008 (C2 domain), IPR002035 (von Willebrand factor, type A), IPR010734 (Copine)	GO:0005515 (protein binding)
Niben101Scf02912g00010.1	sp|P26882|PPID_BOVIN	*-*-	Peptidyl-prolyl cis-trans isomerase D	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR011990 (Tetratricopeptide-like helical domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0005515 (protein binding), GO:0006457 (protein folding)
Niben101Scf08478g01012.1	sp|Q5ZIN1|NUDC_CHICK	*-*-	Nuclear migration protein nudC	IPR008978 (HSP20-like chaperone)	
Niben101Scf28593g00003.1	sp|Q9ZSY8|IAA27_ARATH	***-	Auxin-responsive protein IAA27	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf06769g02004.1	dbj|BAF52855.1|	***-	repressor of silencing 1 [Nicotiana tabacum]	IPR011257 (DNA glycosylase), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal), IPR028924 (Permuted single zf-CXXC unit), IPR028925 (Demeter, RRM-fold domain)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf00777g04004.1	sp|Q9LM90|Y1060_ARATH	--*-	B3 domain-containing protein	IPR015300 (DNA-binding pseudobarrel domain)	
Niben101Scf02289g00012.1	AT3G30300.1	***-	O-fucosyltransferase family protein LENGTH=677	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf06779g03004.1	sp|Q9FL89|GL119_ARATH	***-	Germin-like protein subfamily 1 member 19	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf02244g01010.1	gb|KEH19490.1|	*-*-	anticodon-binding domain protein [Medicago truncatula]	IPR019181 (Anticodon-binding domain)	
Niben101Scf00177g10005.1			Unknown protein		
Niben101Scf12938g00001.1	sp|P19595|UGPA_SOLTU	****	UTP--glucose-1-phosphate uridylyltransferase	IPR002618 (UTP--glucose-1-phosphate uridylyltransferase family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0003983 (UTP:glucose-1-phosphate uridylyltransferase activity), GO:0006011 (UDP-glucose metabolic process), GO:0008152 (metabolic process), GO:0070569 (uridylyltransferase activity)
Niben101Scf02581g02007.1	sp|P22178|MAOC_FLATR	--*-	NADP-dependent malic enzyme, chloroplastic		
Niben101Scf05412g00009.1	sp|P59234|YIPL_SOLTU	***-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf03634g06013.1	sp|P10107|ANXA1_MOUSE	***-	Annexin A1	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf00646g07018.1	sp|Q9LPU9|VITH1_ARATH	***-	Vacuolar iron transporter homolog 1	IPR008217 (Ccc1 family)	
Niben101Scf01719g04026.1			Unknown protein		
Niben101Scf05706g01014.1	sp|Q8C7Q4|RBM4_MOUSE	--**	RNA-binding protein 4	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR016194 (SPOC like C-terminal domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf28181g00006.1	AT1G76170.1	****	2-thiocytidine tRNA biosynthesis protein, TtcA LENGTH=332	IPR012089 (2-thiocytidine tRNA biosynthesis protein, TtcA)	GO:0008033 (tRNA processing)
Niben101Scf01272g00014.1	sp|Q9LJK1|FUT11_ARATH	****	Glycoprotein 3-alpha-L-fucosyltransferase A	IPR001503 (Glycosyl transferase, family 10)	GO:0006486 (protein glycosylation), GO:0008417 (fucosyltransferase activity), GO:0016020 (membrane)
Niben101Scf00560g05009.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02829g08004.1	AT4G04614.1	***-	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). LENGTH=176		
Niben101Scf02133g08008.1	sp|Q6FLQ5|AIM32_CANGA	***-	Altered inheritance of mitochondria protein 32	IPR009737 (Sucraseferredoxin-like)	
Niben101Scf06533g00012.1	AT4G22756.1	***-	sterol C4-methyl oxidase 1-2 LENGTH=299	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01189g03003.1	AT5G66600.4	***-	Protein of unknown function, DUF547 LENGTH=629	IPR006869 (Domain of unknown function DUF547), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	
Niben101Scf08162g00014.1	sp|Q97U29|KDGK_SULSO	--*-	2-dehydro-3-deoxygluconokinase/2-dehydro-3-deoxygalactonokinase		
Niben101Scf14017g00004.1	sp|Q9NW13|RBM28_HUMAN	--**	RNA-binding protein 28	IPR008111 (RNA-binding motif protein 8), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006396 (RNA processing)
Niben101Scf03942g02001.1	sp|A0KHR8|MAO1_AERHH	****	NAD-dependent malic enzyme	IPR001891 (Malic oxidoreductase)	GO:0004470 (malic enzyme activity), GO:0004471 (malate dehydrogenase (decarboxylating) (NAD+) activity), GO:0006108 (malate metabolic process), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf12258g01006.1	AT4G28080.1	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=1819	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Ctg08693g00002.1	AT1G72790.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=561	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf14688g00017.1	sp|P86387|PLDA1_CARPA	****	Phospholipase D alpha 1	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0004630 (phospholipase D activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0046470 (phosphatidylcholine metabolic process)
Niben101Scf09792g03016.1	sp|Q84TE6|NAC22_ARATH	*-*-	NAC domain-containing protein 21/22	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01934g04019.1	sp|O93988|ACL1_SORMK	****	ATP-citrate synthase subunit 1	IPR002020 (Citrate synthase-like), IPR016040 (NAD(P)-binding domain), IPR016102 (Succinyl-CoA synthetase-like)	GO:0003824 (catalytic activity), GO:0003878 (ATP citrate synthase activity), GO:0004775 (succinate-CoA ligase (ADP-forming) activity), GO:0008152 (metabolic process), GO:0044262 (cellular carbohydrate metabolic process), GO:0046912 (transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer)
Niben101Scf08871g00012.1	emb|CDX81275.1|	-**-	BnaC09g06860D [Brassica napus]	IPR008004 (Uncharacterised protein family UPF0503)	
Niben101Scf09820g00005.1	AT1G30890.1	***-	Integral membrane HRF1 family protein LENGTH=269	IPR005578 (Hrf1)	
Niben101Scf00592g08013.1	ref|NP_680768.5|	--*-	RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] gb|AEE86565.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]		
Niben101Scf07578g00026.1	sp|Q8VH51|RBM39_MOUSE	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05298g06005.1	AT1G56220.3	***-	Dormancy/auxin associated family protein LENGTH=140	IPR008406 (Dormancyauxin associated)	
Niben101Scf03068g00004.1	sp|Q7YKL5|MATK_VERRI	*-*-	Maturase K	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf01497g05001.1	sp|Q8LB81|GDL79_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00978g14001.1			Unknown protein		
Niben101Scf08545g00004.1	AT1G76520.1	***-	Auxin efflux carrier family protein LENGTH=390	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf04031g02003.1	sp|A7HBU9|LIPA_ANADF	*-**	Lipoyl synthase	IPR003698 (Lipoyl synthase)	GO:0003824 (catalytic activity), GO:0009107 (lipoate biosynthetic process), GO:0016992 (lipoate synthase activity), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf00923g01002.1	sp|P45037|CCMF_HAEIN	--**	Cytochrome c-type biogenesis protein CcmF	IPR002541 (Cytochrome c assembly protein), IPR003567 (Cytochrome c-type biogenesis protein)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf30596g00017.1	sp|Q6YVY6|NNJA2_ORYSJ	*-*-	Ninja-family protein	IPR012463 (Ninja)	
Niben101Scf06123g04010.1	AT2G37180.1	*-*-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05103g00002.1	ref|NP_001061336.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf02323g01001.1	sp|Q964D8|BUP1_DICDI	***-	Beta-ureidopropionase	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf02494g09005.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01369g04028.1	sp|Q9SM57|OEP21_PEA	***-	Outer envelope pore protein 21, chloroplastic		
Niben101Scf07875g00004.1	AT1G27090.1	*-*-	glycine-rich protein LENGTH=420		
Niben101Scf04958g02014.1	sp|Q57PU1|YDIU_SALCH	***-	UPF0061 protein YdiU	IPR003846 (Uncharacterised protein family UPF0061)	
Niben101Scf02564g04008.1	emb|CDY63745.1|	***-	BnaC05g07770D [Brassica napus]	IPR010410 (Protein of unknown function DUF1005)	
Niben101Scf05830g03003.1	sp|Q0T7A9|AES_SHIF8	--*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01056g03008.1	AT5G11580.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=553	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf08684g03013.1	AT4G32620.2	*-*-	Enhancer of polycomb-like transcription factor protein LENGTH=1540	IPR019542 (Enhancer of polycomb-like, N-terminal)	
Niben101Scf06059g02002.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01848g01004.1	sp|Q9XI05|PSB3A_ARATH	****	Proteasome subunit beta type-3-A	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf05269g03026.1	sp|Q9MAX3|SUT12_ARATH	****	Sulfate transporter 1.2	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0005886 (plasma membrane), GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03325g01004.1	sp|Q5P4E1|ATPE_AROAE	--*-	ATP synthase epsilon chain		
Niben101Scf22845g00004.1	sp|P73016|FABI_SYNY3	***-	Enoyl-[acyl-carrier-protein] reductase [NADH] FabI	IPR016040 (NAD(P)-binding domain)	
Niben101Scf03891g02002.1	ref|XP_002516763.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF45661.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01018g04016.1	AT3G24880.1	*-*-	Helicase/SANT-associated, DNA binding protein LENGTH=1957		
Niben101Scf02806g00027.1	ref|WP_006854831.1|	***-	ATPase AAA [Synechococcus sp. WH 8016] gb|EHA59328.1| single-stranded nucleic acid binding R3H domain-containing protein [Synechococcus sp. WH 8016]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02627g01019.1	sp|A2RKR1|LEUD_LACLM	*-*-	3-isopropylmalate dehydratase small subunit	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf00352g03004.1	emb|CDX74441.1|	***-	BnaA04g09480D [Brassica napus]	IPR007770 (Protein of unknown function DUF679)	
Niben101Scf03718g03009.1	sp|P61759|PFD3_MOUSE	****	Prefoldin subunit 3	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex)
Niben101Scf00049g03004.1	AT4G19420.1	*-*-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf04388g02017.1	sp|Q1CD80|GHRB_YERPN	****	Glyoxylate/hydroxypyruvate reductase B	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg13129g00003.1	AT1G03590.1	***-	Protein phosphatase 2C family protein LENGTH=462	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf05926g02004.1	AT3G22970.1	***-	Protein of unknown function (DUF506) LENGTH=370	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf07096g00005.1	gb|AES73124.2|	***-	localization and RNA pol II promoter Fmp27 domain protein [Medicago truncatula]	IPR019441 (FMP27, GFWDK domain), IPR019443 (FMP27,  C-terminal)	
Niben101Scf11303g01002.1	sp|Q24K12|GPTC1_BOVIN	***-	G patch domain-containing protein 1	IPR000061 (SWAP/Surp), IPR000467 (G-patch domain), IPR011666 (Domain of unknown function DUF1604)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0006396 (RNA processing)
Niben101Scf05541g02010.1	sp|Q55G16|RN113_DICDI	*-*-	RING finger protein 113 homolog	IPR000571 (Zinc finger, CCCH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf06529g06010.1	sp|P24325|GALE_HAEIN	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005886 (UDP-glucose 4-epimerase GalE), IPR025308 (UDP-glucose 4-epimerase C-terminal domain)	GO:0003824 (catalytic activity), GO:0003978 (UDP-glucose 4-epimerase activity), GO:0006012 (galactose metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf05881g01003.1	ref|XP_007016104.1|	*-*-	Smr domain-containing protein, putative [Theobroma cacao] gb|EOY33723.1| Smr domain-containing protein, putative [Theobroma cacao]		
Niben101Scf03271g00010.1	sp|Q9SZY4|PTR27_ARATH	***-	Protein NRT1/ PTR FAMILY 6.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf05880g03037.1	sp|O80872|TBL45_ARATH	***-	Protein trichome birefringence-like 45	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf15568g00039.1	emb|CDX85900.1|	*-*-	BnaC06g22340D [Brassica napus]		
Niben101Scf00180g00006.1	sp|Q1JPL4|NDB1_ARATH	*-**	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06753g02002.1	sp|Q8H038|KATAM_ORYSJ	***-	Xyloglucan galactosyltransferase KATAMARI1 homolog	IPR004263 (Exostosin-like)	
Niben101Scf02312g02006.1	AT1G04870.2	****	protein arginine methyltransferase 10 LENGTH=383	IPR025799 (Protein arginine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity)
Niben101Scf10055g08007.1	AT4G19400.1	***-	Profilin family protein LENGTH=148	IPR005455 (Profilin)	
Niben101Scf04283g10016.1	AT3G63200.1	***-	PATATIN-like protein 9 LENGTH=384	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf03156g01009.1	sp|Q9Q720|POL_HV1V9	--*-	Gag-Pol polyprotein	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02074g04019.1	sp|P08743|COX1_OENBE	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02167g00009.1	sp|P98204|ALA1_ARATH	****	Phospholipid-transporting ATPase 1	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf20768g00029.1	sp|P16273|PRPX_HORVU	*-*-	Pathogen-related protein		
Niben101Scf04706g01012.1	sp|Q9XJ66|MAD22_ORYSJ	****	MADS-box transcription factor 22	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf00585g05010.1	AT4G38380.1	***-	MATE efflux family protein LENGTH=560	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf13540g04025.1	sp|A7X1U8|MIAA_STAA1	*-**	tRNA dimethylallyltransferase	IPR002627 (tRNA isopentenyltransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf06413g02011.1	AT5G18020.1	***-	SAUR-like auxin-responsive protein family LENGTH=91	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf06602g00009.1	sp|Q8MKD1|UBB_HORSE	***-	Polyubiquitin-B	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf01774g10020.1	ref|WP_032378363.1|	*-*-	membrane protein [Rhodococcus fascians]	IPR021414 (Protein of unknown function DUF3054)	
Niben101Scf01001g00003.1	sp|P23432|E13C_TOBAC	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	
Niben101Scf01594g10008.1	ref|XP_007048621.1|	*-*-	CAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 3 [Theobroma cacao] gb|EOX92778.1| CAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 3 [Theobroma cacao]		
Niben101Scf01505g02034.1	sp|Q9LUJ2|PP249_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05173g05003.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00883g14001.1	sp|P45434|SSRA_ARATH	***-	Translocon-associated protein subunit alpha	IPR005595 (Translocon-associated protein (TRAP), alpha subunit)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf05605g00052.1	sp|Q07060|ATP9_PETSP	*-**	ATP synthase subunit 9, mitochondrial	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf05543g01001.1			Unknown protein		
Niben101Scf02632g06005.1	emb|CDY47242.1|	--*-	BnaA02g29280D [Brassica napus]		
Niben101Scf03015g03012.1	ref|WP_002802095.1|	*-*-	membrane protein [Microcystis aerugin [Microcystis aeruginosa PCC 9701]	IPR021275 (Protein of unknown function DUF2854)	
Niben101Scf01247g03002.1	sp|Q9STS6|LBD27_ARATH	*-*-	LOB domain-containing protein 27	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf02725g04003.1			Unknown protein		
Niben101Scf08326g00014.1	sp|Q9SF78|GDL29_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain), IPR015880 (Zinc finger, C2H2-like)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds), GO:0046872 (metal ion binding)
Niben101Scf00104g04002.1	sp|Q9SV13|SUT31_ARATH	****	Sulfate transporter 3.1	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0009507 (chloroplast), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf12293g02026.1	sp|P36627|BYR3_SCHPO	****	Cellular nucleic acid-binding protein homolog	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf03208g01009.1	sp|Q69ZF3|GBA2_MOUSE	*-**	Non-lysosomal glucosylceramidase	IPR006775 (Glucosylceramidase)	GO:0003824 (catalytic activity), GO:0004348 (glucosylceramidase activity), GO:0006665 (sphingolipid metabolic process), GO:0016021 (integral component of membrane)
Niben101Scf15120g01015.1	sp|Q7Y1B6|GAI_SOLLC	***-	DELLA protein GAI	IPR005202 (Transcription factor GRAS), IPR021914 (Transcriptional factor DELLA, N-terminal), IPR030006 (Transcriptional factor DELLA)	GO:0000989 (transcription factor binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf04653g02007.1	sp|Q9NW13|RBM28_HUMAN	*-**	RNA-binding protein 28	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05932g03011.1	sp|B7N9S6|SYQ_ECOLU	****	Glutamine--tRNA ligase	IPR000924 (Glutamyl/glutaminyl-tRNA synthetase)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004818 (glutamate-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006412 (translation), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006424 (glutamyl-tRNA aminoacylation), GO:0016876 (ligase activity, forming aminoacyl-tRNA and related compounds), GO:0043039 (tRNA aminoacylation)
Niben101Scf04036g01001.1	AT1G78870.1	***-	ubiquitin-conjugating enzyme 35 LENGTH=154	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf03004g03025.1	sp|Q9NVE7|PANK4_HUMAN	*-*-	Pantothenate kinase 4	IPR016949 (Uncharacterised conserved protein UCP030210)	
Niben101Scf03056g02008.1	sp|Q3A9T5|RL15_CARHZ	****	50S ribosomal protein L15	IPR005749 (Ribosomal protein L15, bacterial-type), IPR021131 (Ribosomal protein L18e/L15P)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf00369g19023.1	sp|O49006|PME3_ARATH	--**	Pectinesterase/pectinesterase inhibitor 3	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf05095g01002.1	AT3G01930.2	*-*-	Major facilitator superfamily protein LENGTH=584	IPR010658 (Nodulin-like)	
Niben101Scf06976g06016.1	ref|WP_009782089.1|	***-	glycosyltransferase [Lyngbya sp. PCC 8106] gb|EAW39129.1| Glycosyl transferase, family 9 [Lyngbya sp. PCC 8106]		
Niben101Scf03772g01004.1	sp|Q6PFJ7|NSMA3_DANRE	*-**	Sphingomyelin phosphodiesterase 4	IPR024129 (Sphingomyelin phosphodiesterase 4)	GO:0050290 (sphingomyelin phosphodiesterase D activity)
Niben101Scf01927g06013.1	sp|Q9ZR37|DUS1_ARATH	*-**	Dual specificity protein phosphatase 1	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf08931g00006.1	ref|NP_197537.1|	--*-	serine-rich protein-like protein [Arabidopsis thaliana] gb|AED92836.1| serine-rich protein-like protein [Arabidopsis thaliana]		
Niben101Scf01752g02011.1	sp|D3ZTQ1|SFSWA_RAT	*-*-	Splicing factor, suppressor of white-apricot homolog	IPR000061 (SWAP/Surp), IPR019147 (Suppressor of white apricot N-terminal domain)	GO:0003723 (RNA binding), GO:0006396 (RNA processing)
Niben101Scf18348g01031.1	ref|XP_002905633.1|	*-**	helitron helicase-like protein [Phytophthora infestans T30-4] gb|EEY68474.1| helitron helicase-like protein [Phytophthora infestans T30-4]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf07678g02003.1	AT3G58790.1	****	galacturonosyltransferase 15 LENGTH=540	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf03038g02002.1			Unknown protein		
Niben101Scf01093g05001.1	gb|ADX23485.1|	***-	DOG1, partial [Arabidopsis thaliana]	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00167g04011.1	sp|Q8DLP3|ATPA_THEEB	****	ATP synthase subunit alpha	IPR005294 (ATPase, F1 complex, alpha subunit), IPR023366 (ATP synthase subunit alpha-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0015992 (proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046034 (ATP metabolic process), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf04934g02006.1	sp|P43510|CPR6_CAEEL	****	Cathepsin B-like cysteine proteinase 6	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf08176g00008.1	AT3G13060.2	***-	evolutionarily conserved C-terminal region 5 LENGTH=634	IPR007275 (YTH domain)	
Niben101Scf00273g00010.1			Unknown protein		
Niben101Scf12320g01017.1	AT1G28420.1	*-*-	homeobox-1 LENGTH=1705	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf06090g02009.1			Unknown protein		
Niben101Scf09068g02005.1	sp|Q6NWI1|RSRC2_DANRE	--*-	Arginine/serine-rich coiled-coil protein 2	IPR028124 (Small acidic protein-like domain)	
Niben101Scf04130g00007.1	sp|Q6DBP8|GAT11_ARATH	****	GATA transcription factor 11	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00935g00014.1	sp|Q7NG34|GLO2_GLOVI	*-*-	Hydroxyacylglutathione hydrolase	IPR001279 (Beta-lactamase-like), IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf00472g06015.1	sp|F4I0N3|Y1572_ARATH	--*-	WEB family protein		
Niben101Scf01339g05013.1	AT1G05900.2	*-*-	endonuclease III 2 LENGTH=386	IPR011257 (DNA glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair)
Niben101Scf02074g00055.1	ref|YP_009045728.1|	***-	orf112a (mitochondrion) [Batis maritima] gb|AIC83331.1| orf112a (mitochondrion) [Batis maritima]		
Niben101Scf00338g02017.1	sp|Q8T2T7|TOP3_DICDI	*-**	DNA topoisomerase 3	IPR000380 (DNA topoisomerase, type IA), IPR023405 (DNA topoisomerase, type IA, core domain)	GO:0003677 (DNA binding), GO:0003916 (DNA topoisomerase activity), GO:0003917 (DNA topoisomerase type I activity), GO:0006265 (DNA topological change)
Niben101Scf01510g00023.1	gb|AFO69204.1|	****	ATPase subunit 8 (mitochondrion) [Gossypium hirsutum]	IPR003319 (ATP synthase YMF19-like, N-terminal), IPR009455 (ATP synthase YMF19, uncharacterised, C-terminal)	GO:0005739 (mitochondrion), GO:0016021 (integral component of membrane), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances)
Niben101Scf00231g02002.1	sp|Q5SMI4|RL393_ORYSJ	*-*-	60S ribosomal protein L39-3	IPR000077 (Ribosomal protein L39e), IPR023626 (Ribosomal protein L39e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf34405g00002.1	AT1G49750.1	*-*-	Leucine-rich repeat (LRR) family protein LENGTH=494	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02467g00007.1	gb|ABA93441.1|	--*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf04989g01026.1	AT1G53025.1	*-*-	Ubiquitin-conjugating enzyme family protein LENGTH=543	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf00761g05018.1	AT5G13490.1	***-	ADP/ATP carrier 2 LENGTH=385	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf04099g06015.1	AT1G27510.1	*-*-	Protein of unknown function (DUF3506) LENGTH=651		
Niben101Scf05787g00005.1	sp|O65238|Y5537_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain)	GO:0048544 (recognition of pollen)
Niben101Scf09141g02019.1	sp|Q6TDP3|KLH17_MOUSE	*-*-	Kelch-like protein 17	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf01158g01007.1	ref|XP_007035479.1|	***-	NAD(P)-binding R isoform 1 [Theobroma cacao]		
Niben101Scf07790g03028.1	sp|O49710|HS154_ARATH	***-	15.4 kDa class V heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf04052g02003.1			Unknown protein		
Niben101Scf04032g00001.1	sp|B2AML6|MTNA_PODAN	*-*-	Methylthioribose-1-phosphate isomerase	IPR000649 (Initiation factor 2B-related), IPR000782 (FAS1 domain), IPR027363 (Methylthioribose-1-phosphate isomerase-like, N-terminal domain)	GO:0044237 (cellular metabolic process)
Niben101Ctg09567g00001.1	sp|Q14974|IMB1_HUMAN	*-*-	Importin subunit beta-1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02045g05008.1	gb|AAK91897.1|AC091627_10	***-	Hsp20/alpha crystallin family protein [Solanum demissum]	IPR008978 (HSP20-like chaperone)	
Niben101Scf03978g09010.1	ref|WP_029946612.1|	***-	membrane protein [Bacillus subtilis]	IPR008537 (Protein of unknown function DUF819)	
Niben101Scf00856g02001.1	sp|P19244|HSP41_PEA	*-*-	22.7 kDa class IV heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf01212g02030.1	AT4G18470.1	***-	negative regulator of systemic acquired resistance (SNI1) LENGTH=432		
Niben101Scf03326g04014.1	AT1G65000.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=83		
Niben101Scf02945g01005.1	AT4G16100.1	***-	Protein of unknown function (DUF789) LENGTH=394	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf02232g02008.1	sp|Q57604|MJK1_METJA	--**	Potassium channel protein 1	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03143g06001.1	dbj|BAB13710.1|	***-	elicitor resposible protein [Nicotiana tabacum] gb|AAS55699.1| TCIP [Nicotiana tabacum]		
Niben101Scf01750g06009.1	AT1G03445.1	*-*-	Serine/threonine protein phosphatase family protein LENGTH=793	IPR015915 (Kelch-type beta propeller), IPR029052 (Metallo-dependent phosphatase-like)	GO:0005515 (protein binding), GO:0016787 (hydrolase activity)
Niben101Scf01259g10003.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf09501g01006.1	sp|Q9CHL8|LMRA_LACLA	*-**	Multidrug resistance ABC transporter ATP-binding and permease protein	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf05827g06015.1	AT3G43240.1	****	ARID/BRIGHT DNA-binding domain-containing protein LENGTH=747	IPR001606 (ARID DNA-binding domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003677 (DNA binding)
Niben101Scf00234g02049.1	sp|Q5PQZ3|ZNT9_DANRE	****	Zinc transporter 9	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf08653g06015.1	gb|AES71102.2|	--*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf24948g00003.1	AT5G05930.1	***-	guanylyl cyclase 1 LENGTH=274	IPR018616 (Guanylyl cyclase)	
Niben101Scf04220g06004.1	sp|Q9S9N4|MRS21_ARATH	****	Magnesium transporter MRS2-1	IPR002523 (Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB), IPR026573 (Magnesium transporter MRS2/LPE10)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01841g03003.1	sp|Q17QU7|DHR13_BOVIN	*-**	Dehydrogenase/reductase SDR family member 13	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf05618g02003.1	sp|Q9C857|GDL16_ARATH	--*-	GDSL esterase/lipase		
Niben101Scf09760g04002.1			Unknown protein		
Niben101Scf02252g01014.1	sp|Q9FMR0|PER60_ARATH	****	Peroxidase 60	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf20645g00007.1	ref|XP_003588352.1|	*-*-	NADH dehydrogenase subunit [Medicago truncatula]		
Niben101Scf00574g05005.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf17422g00018.1	sp|O26144|RPOD_METTH	****	DNA-directed RNA polymerase subunit D	IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf02706g00003.1	sp|Q6NQB7|B3GT7_ARATH	*-**	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf02029g01003.1	sp|Q9SW80|BLH2_ARATH	*-*-	BEL1-like homeodomain protein 2	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01196g01009.1	AT1G24620.1	****	EF hand calcium-binding protein family LENGTH=186	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf05137g01020.1	sp|Q8GWC3|PR1A2_ARATH	***-	PRA1 family protein A2	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf08706g01012.1	sp|Q2ULC6|UTP10_ASPOR	*-*-	U3 small nucleolar RNA-associated protein 10	IPR012954 (BP28, C-terminal domain), IPR016024 (Armadillo-type fold), IPR022125 (U3 small nucleolar RNA-associated protein 10)	GO:0005488 (binding)
Niben101Scf07728g01005.1	sp|Q9LR69|PPR8_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06200g03017.1	AT1G28410.1	***-	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: my s in 77 species: Archae - 4; Bacteria - 22; Metazoa - 249; Fungi - 4; Plants - 98; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). LENGTH=277		
Niben101Scf05166g07011.1	sp|P0CB49|YLPM1_RAT	*-*-	YLP motif-containing protein 1	IPR026314 (YLP motif-containing protein 1)	GO:0005634 (nucleus)
Niben101Scf02309g03018.1	emb|CDX91444.1|	--*-	BnaC04g07060D [Brassica napus]	IPR004314 (Domain of unknown function DUF239)	
Niben101Scf02408g01009.1	sp|Q9LJK3|LAG12_ARATH	***-	LAG1 longevity assurance homolog 2	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf14079g00010.1			Unknown protein		
Niben101Scf02805g06002.1	sp|Q8N7C7|RN148_HUMAN	*-*-	RING finger protein 148	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02232g00021.1	ref|XP_007026488.1|	****	RNA-binding protein, putative isoform 2 [Theobroma cacao] gb|EOY06990.1| RNA-binding protein, putative isoform 2 [Theobroma cacao]	IPR002344 (Lupus La protein), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0006396 (RNA processing), GO:0030529 (ribonucleoprotein complex)
Niben101Scf05438g01010.1			Unknown protein		
Niben101Scf02207g05006.1	sp|Q05935|MYBA_XENLA	*-*-	Myb-related protein A	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06516g04017.1	sp|Q4KYM5|CCD42_ORYSJ	***-	Cyclin-D4-2	IPR013763 (Cyclin-like)	
Niben101Scf02433g00004.1	AT1G16360.1	***-	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein LENGTH=336	IPR005045 (CDC50/LEM3 family)	GO:0016020 (membrane)
Niben101Scf13608g00009.1	ref|XP_002513686.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF49089.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02759g03007.1	sp|Q9AXT8|CMT1_MAIZE	****	DNA (cytosine-5)-methyltransferase 1	IPR001025 (Bromo adjacent homology (BAH) domain), IPR001525 (C-5 cytosine methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003682 (chromatin binding), GO:0008168 (methyltransferase activity)
Niben101Scf00063g06038.1	gb|AGZ19448.1|	***-	APOLLO [Boechera sp. IPK 66]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf04146g01012.1	AT5G10270.1	****	cyclin-dependent kinase C;1 LENGTH=505	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06105g03006.1	sp|Q9C652|RBP1_ARATH	--**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06364g00002.1			Unknown protein		
Niben101Scf04444g08013.1	AT5G55910.1	*-**	D6 protein kinase LENGTH=498	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02477g00012.1	sp|Q9M0E2|RL282_ARATH	***-	60S ribosomal protein L28-2	IPR002672 (Ribosomal protein L28e), IPR029004 (Ribosomal L28e/Mak16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06236g00001.1	AT3G60680.1	***-	Plant protein of unknown function (DUF641) LENGTH=499	IPR006943 (Domain of unknown function DUF641, plant)	
Niben101Scf20037g00007.1	gb|ABA91837.2|	*-*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf03373g01009.1	sp|Q3ZBR5|TTC1_BOVIN	*-*-	Tetratricopeptide repeat protein 1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf09559g03003.1	emb|CDY19064.1|	*-*-	BnaA04g18040D [Brassica napus]		
Niben101Scf03445g00002.1	sp|Q8L8T2|GRXC1_ARATH	***-	Glutaredoxin-C1	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00126g04003.1	AT3G16510.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=360	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf09260g00003.1	sp|Q8H129|PPA3_ARATH	****	Purple acid phosphatase 3	IPR024927 (Acid phosphatase, type 5), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity)
Niben101Scf01259g10017.1			Unknown protein		
Niben101Scf00271g02002.1	AT3G55600.1	***-	Membrane fusion protein Use1 LENGTH=240	IPR019150 (Vesicle transport protein, Use1)	
Niben101Scf20564g00002.1	AT3G10190.1	****	Calcium-binding EF-hand family protein LENGTH=209	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02283g00004.1	AT3G61730.1	***-	reduced male fertility LENGTH=354	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf07554g01008.1	emb|CDY23510.1|	--*-	BnaC06g24790D [Brassica napus]		
Niben101Scf00099g01001.1	emb|CAA78966.1|	--*-	pollen preferential protein [Lilium longiflorum] emb|CAA78977.1| pollen preferential protein [Lilium longiflorum] gb|AAA33399.1| pollen preferential protein [Lilium longiflorum]		
Niben101Scf07736g00003.1	sp|A7M958|RPOB_CUSRE	*-**	DNA-directed RNA polymerase subunit beta	IPR007642 (RNA polymerase Rpb2, domain 2), IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf00453g01001.1	sp|P11505|AT2B1_RAT	*-**	Plasma membrane calcium-transporting ATPase 1	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0016021 (integral component of membrane)
Niben101Scf02335g04021.1	AT5G59460.1	***-	scarecrow-like transcription factor 11 (SCL11) LENGTH=172	IPR019324 (M-phase phosphoprotein 6)	
Niben101Scf09885g00003.1	sp|Q7XR52|CYSP1_ORYSJ	*-**	Cysteine protease 1	IPR000118 (Granulin), IPR013128 (Peptidase C1A)	GO:0008234 (cysteine-type peptidase activity)
Niben101Scf04422g01007.1	AT5G06610.1	***-	Protein of unknown function (DUF620) LENGTH=368	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf39490g00019.1	sp|Q0I5Y6|MNMA_HISS1	****	tRNA-specific 2-thiouridylase MnmA	IPR004506 (tRNA-specific 2-thiouridylase), IPR023382 (Adenine nucleotide alpha hydrolase-like domains)	GO:0008033 (tRNA processing), GO:0016740 (transferase activity), GO:0016783 (sulfurtransferase activity)
Niben101Scf01269g05003.1	sp|Q567B1|OTU1_DANRE	***-	Ubiquitin thioesterase OTU1	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf02441g03001.1	sp|Q73E41|BACA1_BACC1	***-	Calcium-transporting ATPase 1	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf04156g01008.1	AT5G53060.1	****	RNA-binding KH domain-containing protein LENGTH=652	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf07671g00007.1	gb|ABA95676.1|	*-*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf13926g01010.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf02228g02003.1			Unknown protein		
Niben101Scf01773g03005.1	sp|Q31FG4|HLDD_THICR	--**	ADP-L-glycero-D-manno-heptose-6-epimerase	IPR016040 (NAD(P)-binding domain)	GO:0003854 (3-beta-hydroxy-delta5-steroid dehydrogenase activity), GO:0006694 (steroid biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00869g01011.1	sp|P54802|ANAG_HUMAN	--*-	Alpha-N-acetylglucosaminidase	IPR007781 (Alpha-N-acetylglucosaminidase), IPR024732 (Alpha-N-acetylglucosaminidase, C-terminal), IPR024733 (Alpha-N-acetylglucosaminidase, tim-barrel domain)	
Niben101Scf08724g04002.1	AT1G26850.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=616	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf04914g00017.1	AT1G29690.1	***-	MAC/Perforin domain-containing protein LENGTH=561	IPR020864 (Membrane attack complex component/perforin (MACPF) domain)	
Niben101Scf01394g00007.1			Unknown protein		
Niben101Scf01634g03019.1	sp|O22213|CKX1_ARATH	****	Cytokinin dehydrogenase 1	IPR016164 (FAD-linked oxidase-like, C-terminal), IPR016166 (FAD-binding, type 2), IPR016170 (Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0009690 (cytokinin metabolic process), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0019139 (cytokinin dehydrogenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03687g00008.1	AT1G59620.1	*-*-	Disease resistance protein (CC-NBS-LRR class) family LENGTH=842	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01689g04016.1	sp|P22242|DRPE_CRAPL	***-	Desiccation-related protein PCC13-62		
Niben101Scf03733g03004.1	emb|CDX89334.1|	***-	BnaA01g15590D [Brassica napus]		
Niben101Scf00850g01031.1	sp|Q42510|GNOM_ARATH	****	ARF guanine-nucleotide exchange factor GNOM	IPR000904 (Sec7 domain), IPR023394 (Sec7 domain, alpha orthogonal bundle)	GO:0005086 (ARF guanyl-nucleotide exchange factor activity), GO:0032012 (regulation of ARF protein signal transduction)
Niben101Scf05855g04003.1	sp|O80647|PP195_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf12389g00005.1	sp|Q9BYX2|TBD2A_HUMAN	*-*-	TBC1 domain family member 2A	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf00687g00011.1	sp|B8HMR1|RL16_CYAP4	*-*-	50S ribosomal protein L16	IPR000114 (Ribosomal protein L16), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf00962g00007.1	gb|AAF79798.1|AC020646_21	--*-	T32E20.29 [Arabidopsis thaliana]		
Niben101Scf00911g06016.1	sp|Q5SPX3|RN215_MOUSE	--*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08804g02009.1	ref|NP_001048037.1|	-**-	product [Oryza sativa Japonica Group]		
Niben101Scf04748g01013.1	AT5G19940.1	***-	Plastid-lipid associated protein PAP / fibrillin family protein LENGTH=239	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf02425g01005.1	sp|Q9LVJ7|NFYA6_ARATH	****	Nuclear transcription factor Y subunit A-6	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00174g00037.1	sp|Q9LT47|FIE_ARATH	*-*-	Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM	IPR017986 (WD40-repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf09696g00044.1	sp|P60620|COX1_ARATH	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03039g01020.1	sp|Q9C8K7|FBK21_ARATH	***-	F-box/kelch-repeat protein	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf04943g01012.1	sp|O48837|LRKS2_ARATH	--*-	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00560g12010.1	sp|Q8S8X9|RPOB_ATRBE	*-*-	DNA-directed RNA polymerase subunit beta		
Niben101Scf11962g00015.1	sp|Q9BUK6|MSTO1_HUMAN	*-*-	Protein misato homolog 1	IPR003008 (Tubulin/FtsZ, GTPase domain), IPR019605 (Misato Segment II tubulin-like domain), IPR029209 (DML1/Misato, tubulin domain)	
Niben101Scf02699g01010.1	ref|XP_002524800.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF37643.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf03431g00051.1	ref|YP_009045808.1|	***-	orf134 (mitochondrion) [Batis maritima] gb|AIC83411.1| orf134 (mitochondrion) [Batis maritima]		
Niben101Scf39201g00004.1	sp|Q2G512|ACSA_NOVAD	***-	Acetyl-coenzyme A synthetase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00360g01006.1	AT4G31860.1	****	Protein phosphatase 2C family protein LENGTH=357	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf00426g02005.1	sp|A5PKH3|FAAA_BOVIN	****	Fumarylacetoacetase	IPR005959 (Fumarylacetoacetase), IPR011234 (Fumarylacetoacetase, C-terminal-related)	GO:0003824 (catalytic activity), GO:0004334 (fumarylacetoacetase activity), GO:0008152 (metabolic process), GO:0009072 (aromatic amino acid family metabolic process)
Niben101Scf01075g00019.1	sp|Q8L706|SYT5_ARATH	*-*-	Synaptotagmin-5	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01462g01008.1			Unknown protein		
Niben101Scf13762g02019.1	AT5G54930.1	*-*-	AT hook motif-containing protein LENGTH=286		
Niben101Scf05713g00009.1	sp|Q9P7W5|RIO2_SCHPO	****	Serine/threonine-protein kinase rio2	IPR011009 (Protein kinase-like domain), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR015285 (RIO2 kinase, winged helix, N-terminal), IPR018934 (RIO-like kinase)	GO:0003824 (catalytic activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06008g00008.1	gb|AGT17598.1|	*-*-	xyloglucan-specific endoglucanase inhibitor 11 [Solanum tuberosum]	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02741g02005.1	AT2G36970.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=490	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00398g06014.1	sp|Q9FII1|FK118_ARATH	*-*-	F-box/kelch-repeat protein		
Niben101Scf03389g00040.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02289g00011.1	ref|XP_007032900.1|	*-*-	O-fuc isoform 2 [Theobroma cacao]		
Niben101Scf12143g00001.1	sp|P81392|MYB06_ANTMA	***-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05387g12005.1	sp|Q5FVJ8|SENP8_RAT	*-*-	Sentrin-specific protease 8		
Niben101Scf00326g00004.1	sp|Q8GYX3|MP705_ARATH	****	Microtubule-associated protein 70-5	IPR009768 (Microtubule-associated protein 70)	GO:0007010 (cytoskeleton organization), GO:0008017 (microtubule binding)
Niben101Scf02581g02006.1	gb|AAK13103.1|AC078839_19	*-**	Helicase-like protein [Oryza sativa Japonica Group]	IPR010285 (DNA helicase Pif1 like), IPR025476 (Helitron helicase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf03350g09019.1	ref|XP_007050821.1|	*-**	Mitochondrial transcription termination factor family protein [Theobroma cacao] gb|EOX94978.1| Mitochondrial transcription termination factor family protein [Theobroma cacao]	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00010g04002.1	sp|Q9FLJ2|NC100_ARATH	*-*-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10708g00008.1	emb|CCG20324.1|	*-*-	Ran GTPase activating protein 2 [Solanum spegazzinii]	IPR025265 (WPP domain)	
Niben101Scf00766g00014.1	AT1G13000.1	***-	Protein of unknown function (DUF707) LENGTH=401	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf05855g04004.1	sp|Q3SZV6|TIM21_BOVIN	*-**	Mitochondrial import inner membrane translocase subunit Tim21	IPR013261 (Mitochondrial import inner membrane translocase subunit Tim21)	GO:0005744 (mitochondrial inner membrane presequence translocase complex), GO:0030150 (protein import into mitochondrial matrix)
Niben101Scf12199g00018.1	gb|AAY43791.1|	--*-	E6-2 [Gossypium hirsutum]		
Niben101Scf07477g02010.1	sp|Q62101|KPCD1_MOUSE	*-**	Serine/threonine-protein kinase D1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02437g05001.1	AT5G20810.2	***-	SAUR-like auxin-responsive protein family LENGTH=190	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf06589g00009.1	sp|B1WY30|GUAA_CYAA5	****	GMP synthase [glutamine-hydrolyzing]	IPR001674 (GMP synthase, C-terminal), IPR004739 (GMP synthase, N-terminal), IPR022955 (GMP synthase), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003922 (GMP synthase (glutamine-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0006164 (purine nucleotide biosynthetic process), GO:0006177 (GMP biosynthetic process), GO:0016462 (pyrophosphatase activity)
Niben101Scf04044g13019.1	emb|CDY14988.1|	***-	BnaA10g08680D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985), IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf09442g01004.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf12103g00012.1	sp|Q5HNR8|RELA_STAEQ	*-*-	GTP pyrophosphokinase	IPR007685 (RelA/SpoT), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding), GO:0015969 (guanosine tetraphosphate metabolic process)
Niben101Scf03942g02002.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR001878 (Zinc finger, CCHC-type), IPR009057 (Homeodomain-like)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0008270 (zinc ion binding)
Niben101Scf02826g00010.1	sp|P46903|NATA_BACSU	*-**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR026082 (ABC transporter A, ABCA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005215 (transporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity)
Niben101Scf01623g09004.1	AT1G02700.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=247		
Niben101Scf03028g04007.1	sp|Q6F1Z1|RL2_MESFL	--*-	50S ribosomal protein L2	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02819g05021.1	sp|Q39786|PGLR_GOSHI	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01442g01008.1	AT3G58480.1	***-	calmodulin-binding family protein LENGTH=575		
Niben101Scf04748g01015.1	sp|Q9LVQ5|PP432_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00069g05004.1			Unknown protein		
Niben101Scf05829g00017.1	sp|A7SXK3|TMED_NEMVE	***-	Transmembrane emp24 domain-containing protein	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf02803g01010.1	sp|Q54P76|EXOC4_DICDI	--**	Exocyst complex component 4	IPR007191 (Sec8 exocyst complex component specific domain)	GO:0000145 (exocyst), GO:0006904 (vesicle docking involved in exocytosis), GO:0015031 (protein transport)
Niben101Scf06734g02021.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04035g00002.1	sp|Q55141|ILVH_SYNY3	*-**	Acetolactate synthase small subunit	IPR004789 (Acetolactate synthase, small subunit)	GO:0003984 (acetolactate synthase activity), GO:0008152 (metabolic process), GO:0009082 (branched-chain amino acid biosynthetic process), GO:0016597 (amino acid binding)
Niben101Scf02659g02009.1	sp|A9BFL9|FTSH1_PETMO	*-**	ATP-dependent zinc metalloprotease FtsH 1	IPR001487 (Bromodomain), IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf02752g00015.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01175g01002.1	sp|Q8L9P8|RLF33_ARATH	***-	Protein RALF-like 33	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf02798g05008.1	gb|KEH42947.1|	***-	lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf02114g00011.1	AT1G68040.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=363	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf03918g00009.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07926g04007.1	sp|P14232|TGA1A_TOBAC	****	TGACG-sequence-specific DNA-binding protein TGA-1A	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03570g01013.1	AT1G04340.1	*-*-	HR-like lesion-inducing protein-related LENGTH=159	IPR008637 (HR-like lesion-inducer)	
Niben101Scf06043g02002.1	emb|CDY49124.1|	***-	BnaA02g16820D [Brassica napus]		
Niben101Scf01775g01018.1	sp|Q6I544|GL52_ORYSJ	***-	Germin-like protein 5-1	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf10431g00014.1	sp|P20284|RS19_HALMA	****	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf02160g00013.1			Unknown protein		
Niben101Scf02334g01022.1	sp|Q18CD3|ISPF_PEPD6	****	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	IPR003526 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase)	GO:0008685 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity), GO:0016114 (terpenoid biosynthetic process)
Niben101Scf00288g06006.1	sp|Q8BWZ3|NAA25_MOUSE	*-*-	N-alpha-acetyltransferase 25, NatB auxiliary subunit	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02401g02012.1			Unknown protein		
Niben101Scf05183g08005.1	sp|Q03ER2|TGT_PEDPA	****	Queuine tRNA-ribosyltransferase	IPR002616 (tRNA-guanine(15) transglycosylase-like)	GO:0006400 (tRNA modification), GO:0008479 (queuine tRNA-ribosyltransferase activity), GO:0008616 (queuosine biosynthetic process)
Niben101Scf02929g05016.1	sp|B0TWP7|NUOD_FRAP2	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09792g00021.1	ref|XP_003590809.1|	***-	Tetratricopeptide repeat protein 7B [Medicago truncatula] gb|AES61060.1| TPR 7B-like protein [Medicago truncatula]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02366g01005.1	gb|AFW65822.1|	***-	COV1 [Zea mays]	IPR007462 (Protein of unknown function DUF502)	
Niben101Scf02283g00006.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0030247 (polysaccharide binding)
Niben101Scf01343g00016.1			Unknown protein		
Niben101Scf08632g00001.1	sp|Q2JFH5|RL4_FRASC	*-*-	50S ribosomal protein L4	IPR002136 (Ribosomal protein L4/L1e), IPR023574 (Ribosomal protein L4 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf13600g01002.1	sp|P27492|CB21_TOBAC	***-	Chlorophyll a-b binding protein 16, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf00465g07001.1	sp|Q91YE6|IPO9_MOUSE	***-	Importin-9	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf05049g00008.1	AT1G06210.1	*-*-	ENTH/VHS/GAT family protein LENGTH=383	IPR004152 (GAT domain)	GO:0005622 (intracellular), GO:0006886 (intracellular protein transport)
Niben101Scf04554g07024.1	sp|Q9M086|DCAF1_ARATH	***-	DDB1- and CUL4-associated factor homolog 1	IPR006594 (LisH dimerisation motif), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02919g03005.1	sp|B3MKS0|IHOG_DROAN	--*-	Interference hedgehog		
Niben101Scf03538g02003.1	sp|P43672|UUP_ECOLI	****	ABC transporter ATP-binding protein uup	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf06876g00013.1	AT3G04860.1	***-	Plant protein of unknown function (DUF868) LENGTH=289	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf02502g10022.1	AT5G36670.1	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=1193	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02929g03081.1	sp|P60434|RL2_STRP1	*-*-	50S ribosomal protein L2	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09590g01009.1			Unknown protein		
Niben101Scf00846g02001.1	sp|Q9LW48|ERF5_NICSY	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg13537g00001.1	sp|O80800|ACPM2_ARATH	***-	Acyl carrier protein 2, mitochondrial	IPR009081 (Acyl carrier protein-like)	
Niben101Scf02433g00002.1	sp|P48979|PGLR_PRUPE	*-**	Polygalacturonase	IPR000408 (Regulator of chromosome condensation, RCC1), IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04907g01013.1	sp|Q8L7G0|ARFA_ARATH	*-*-	Auxin response factor 1	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf04329g00001.1	sp|Q9LFU9|GNA1_ARATH	****	Glucosamine 6-phosphate N-acetyltransferase	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf10434g00009.1	gb|KCU94345.1|	--*-	4-alpha-glucanotransferase [Salmonella enterica subsp. enterica serovar Cerro FSL R8-0235]		
Niben101Scf04015g01007.1	gb|KEH28921.1|	--*-	verticillium wilt resistance-like protein [Medicago truncatula]		
Niben101Scf01976g00014.1	sp|Q5RET6|T184C_PONAB	***-	Transmembrane protein 184C	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184)	
Niben101Scf06100g02030.1			Unknown protein		
Niben101Scf01289g03004.1	sp|Q9C652|RBP1_ARATH	*-**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04205g01001.1	ref|XP_003617651.1|	*-*-	PHD finger protein [Medicago truncatula]		
Niben101Scf01757g01006.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Ctg14991g00002.1	gb|KFB84164.1|	***-	alpha/beta hydrolase [Calothrix sp. 336/3]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00870g15009.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04993g05013.1	sp|O81263|KITH_ORYSJ	*-**	Thymidine kinase	IPR001267 (Thymidine kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004797 (thymidine kinase activity), GO:0005524 (ATP binding)
Niben101Scf01702g08008.1	AT1G75620.1	***-	glyoxal oxidase-related protein LENGTH=547	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR014756 (Immunoglobulin E-set), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf02015g01015.1	gb|KEH43498.1|	***-	animal RPA1 domain protein [Medicago truncatula]		
Niben101Scf02869g09002.1	sp|Q8W1W9|5MAT1_SALSN	***-	Malonyl-coenzyme:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01701g12003.1	sp|O65685|BLH6_ARATH	***-	BEL1-like homeodomain protein 6	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02203g03015.1	sp|Q6GM29|SAC1_XENLA	****	Phosphatidylinositide phosphatase SAC1	IPR002013 (SAC domain), IPR030069 (Phosphoinositide phosphatase SAC6/7/8)	GO:0042578 (phosphoric ester hydrolase activity), GO:0052866 (phosphatidylinositol phosphate phosphatase activity)
Niben101Scf05849g00001.1	sp|P00787|CATB_RAT	--*-	Cathepsin B	IPR000668 (Peptidase C1A, papain C-terminal)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf13002g03014.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf09028g00013.1	sp|Q08603|PGTB2_RAT	****	Geranylgeranyl transferase type-2 subunit beta	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR026873 (Geranylgeranyl transferase type-2 subunit beta)	GO:0003824 (catalytic activity), GO:0004663 (Rab geranylgeranyltransferase activity), GO:0018344 (protein geranylgeranylation)
Niben101Scf02191g00014.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00494g00003.1	sp|O23474|PER40_ARATH	****	Peroxidase 40	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf17482g00013.1	sp|Q8BX32|SLX1_MOUSE	*-*-	Structure-specific endonuclease subunit SLX1	IPR000305 (GIY-YIG nuclease superfamily)	
Niben101Scf18879g00004.1	sp|Q51876|LEP_PHOLA	*-**	Signal peptidase I	IPR000223 (Peptidase S26A, signal peptidase I), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf01146g03013.1	gb|AAT39962.2|	*-*-	Late blight resistance protein, putative [Solanum demissum]		
Niben101Scf05800g02020.1	sp|Q5U241|PD5BB_XENLA	*-*-	Sister chromatid cohesion protein PDS5 homolog B-B	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00916g01008.1	AT5G58070.1	***-	temperature-induced lipocalin LENGTH=186	IPR002446 (Lipocalin, bacterial), IPR011038 (Calycin-like)	GO:0005215 (transporter activity)
Niben101Scf08535g04013.1	sp|F1LZ52|KLHL3_RAT	*-*-	Kelch-like protein 3	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf00308g00008.1	sp|A7QEU4|PER5_VITVI	****	Peroxidase 5	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09489g00002.1	sp|A0JPN6|MED22_RAT	*-**	Mediator of RNA polymerase II transcription subunit 22	IPR009332 (Mediator complex, subunit Med22)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf01350g04013.1	sp|Q9FXA3|BH095_ARATH	***-	Transcription factor bHLH95	IPR002912 (ACT domain), IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0046983 (protein dimerization activity)
Niben101Scf02244g01011.1	AT1G70260.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=375	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf02838g00003.1	AT1G61630.1	****	equilibrative nucleoside transporter 7 LENGTH=417	IPR002259 (Equilibrative nucleoside transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005337 (nucleoside transmembrane transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf01722g04008.1	sp|O85282|DNAK_NEOSE	--*-	Chaperone protein DnaK	IPR008011 (Complex 1 LYR protein)	
Niben101Scf01719g04025.1	gb|KEH39279.1|	*-**	heavy metal transport/detoxification superfamily protein [Medicago truncatula]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf01297g01011.1	sp|P93194|RPK1_IPONI	****	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04036g01002.1	sp|P19963|ALL1_OLEEU	***-	Major pollen allergen Ole e 1	IPR006041 (Pollen Ole e 1 allergen/extensin)	GO:0005615 (extracellular space)
Niben101Scf00536g00003.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01832g00007.1	sp|Q9SSQ2|FB55_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf05664g03008.1	emb|CDX72341.1|	***-	BnaC07g43630D [Brassica napus]		
Niben101Scf06050g03002.1	AT1G65730.1	***-	YELLOW STRIPE like 7 LENGTH=688	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf07260g01009.1			Unknown protein		
Niben101Scf02459g09004.1	sp|O82528|RL15_PETHY	***-	60S ribosomal protein L15	IPR000439 (Ribosomal protein L15e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09541g00005.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07423g03012.1	sp|Q04739|GAL83_YEAST	--*-	SNF1 protein kinase subunit beta-3	IPR006828 (Association with the SNF1 complex (ASC) domain)	GO:0005515 (protein binding)
Niben101Scf02836g01004.1	sp|A5UEJ5|GLGA_HAEIG	*-*-	Glycogen synthase	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf07402g06009.1	sp|Q9Y580|RBM7_HUMAN	--**	RNA-binding protein 7	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03954g01008.1	sp|Q921L5|COG2_MOUSE	****	Conserved oligomeric Golgi complex subunit 2	IPR009316 (COG complex component, COG2), IPR024602 (Conserved oligomeric Golgi complex, subunit 2, N-terminal), IPR024603 (COG complex component, COG2, C-terminal)	GO:0007030 (Golgi organization), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00883g03004.1	AT2G18180.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=558	IPR001071 (Cellular retinaldehyde binding/alpha-tocopherol transport), IPR011074 (CRAL/TRIO, N-terminal domain)	GO:0005215 (transporter activity), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf34798g00008.1	sp|Q48965|PYRG_MYCCT	*-**	CTP synthase	IPR004468 (CTP synthase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003883 (CTP synthase activity), GO:0006221 (pyrimidine nucleotide biosynthetic process)
Niben101Scf02585g00002.1	sp|Q9SS98|OLEO5_ARATH	***-	Oleosin 5	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf00057g00033.1	sp|Q9LH74|MSL5_ARATH	***-	Mechanosensitive ion channel protein 5	IPR006685 (Mechanosensitive ion channel MscS)	GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01200g04005.1	sp|Q9XEE9|ALG11_ARATH	*-*-	GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf02798g01025.1			Unknown protein		
Niben101Scf06976g09004.1	AT4G39050.1	*-**	Kinesin motor family protein LENGTH=1055	IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement)
Niben101Scf02250g03003.1	sp|P78712|ARP3_NEUCR	--*-	Actin-related protein 3		
Niben101Scf04478g01007.1	emb|CDY16192.1|	*-*-	BnaA09g29260D [Brassica napus]	IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf11611g00003.1			Unknown protein		
Niben101Scf10440g00010.1	sp|Q5HGY8|DLDH_STAAC	*-*-	Dihydrolipoyl dehydrogenase	IPR016156 (FAD/NAD-linked reductase, dimerisation domain)	GO:0016491 (oxidoreductase activity), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02015g02006.1	gb|AID21636.1|	***-	At4g21420p-like protein [Arabidopsis lyrata]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf04526g00013.1	sp|Q9SFF9|GL17_ARATH	***-	Germin-like protein subfamily 1 member 7	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf05697g02001.1	ref|WP_029655728.1|	*-*-	rhamnosyltransferase [Brucella abortus]	IPR007402 (Protein of unknown function DUF455)	
Niben101Scf03990g02006.1	emb|CDX91339.1|	***-	BnaC04g08110D [Brassica napus]		
Niben101Scf04276g01012.1	sp|A1C5V3|DBP3_ASPCL	****	ATP-dependent RNA helicase dbp3	IPR004589 (DNA helicase, ATP-dependent, RecQ type), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0006310 (DNA recombination), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf04049g00024.1	AT1G47670.1	***-	Transmembrane amino acid transporter family protein LENGTH=519	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf04981g00016.1			Unknown protein		
Niben101Scf03057g00002.1	AT3G48660.1	***-	Protein of unknown function (DUF 3339) LENGTH=89	IPR021775 (Protein of unknown function DUF3339)	
Niben101Scf14268g00002.1	gb|ABX46123.1|	***-	blight-associated protein P12, partial [Citrus medica]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf04950g07023.1	ref|WP_017891411.1|	****	magnesium-transporting ATPase [Serratia sp. S4]	IPR001757 (P-type ATPase), IPR006415 (P-type ATPase, subfamily IIIB), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0015444 (magnesium-importing ATPase activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf02381g08020.1	gb|AES79945.2|	***-	titan9, putative [Medicago truncatula]		
Niben101Scf03628g12006.1	sp|Q01664|TFAP4_HUMAN	--*-	Transcription factor AP-4	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05319g05002.1	sp|Q6CF78|BRE1_YARLI	--*-	E3 ubiquitin-protein ligase BRE1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03068g00005.1	sp|Q8MD32|MATK_MENLA	*-*-	Maturase K	IPR024942 (Maturase MatK, N-terminal domain)	
Niben101Scf02074g00056.1	gb|AHA47115.1|	****	NADH dehydrogenase subunit 6 (mitochondrion) [Amborella trichopoda]	IPR001457 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 6), IPR022801 (Ribosomal protein S4/S9)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf36042g00006.1	ref|XP_003636005.1|	--*-	Helicase-like protein [Medicago truncatula]		
Niben101Ctg14138g00002.1	sp|Q55G16|RN113_DICDI	*-*-	RING finger protein 113 homolog	IPR000571 (Zinc finger, CCCH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0046872 (metal ion binding)
Niben101Scf01538g04014.1			Unknown protein		
Niben101Scf08478g01011.1			Unknown protein		
Niben101Scf01777g00003.1	gb|ABA95265.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf12938g00002.1	ref|XP_004343014.1|	****	protein tyr tyrosine phosphatase [Capsaspora owczarzaki ATCC 30864]	IPR004861 (Protein-tyrosine phosphatase, SIW14-like), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity)
Niben101Scf08504g02009.1	sp|Q9LIQ6|ING1_ARATH	--*-	PHD finger protein ING1		
Niben101Scf07825g01001.1	AT5G12460.1	***-	Protein of unknown function (DUF604) LENGTH=441	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf05047g00006.1	sp|Q9M817|PTR6_ARATH	***-	Protein NRT1/ PTR FAMILY 1.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf06779g03003.1	sp|Q9SFF9|GL17_ARATH	***-	Germin-like protein subfamily 1 member 7	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf04871g19004.1	sp|O04609|WRK22_ARATH	****	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01375g09001.1	sp|Q41238|LOX16_SOLTU	***-	Linoleate 9S-lipoxygenase 6	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00257g00018.1	AT2G19920.1	*-**	RNA-dependent RNA polymerase family protein LENGTH=927	IPR007855 (RNA-dependent RNA polymerase, eukaryotic-type)	GO:0003968 (RNA-directed RNA polymerase activity)
Niben101Scf01917g04004.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf14274g00005.1	sp|Q5HZA3|ZCH12_RAT	--*-	Zinc finger CCHC domain-containing protein 12		
Niben101Scf14312g00006.1			Unknown protein		
Niben101Scf00128g03011.1	AT1G59650.1	***-	Protein of unknown function (DUF1336) LENGTH=492	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf05413g04002.1	sp|Q9UNW9|NOVA2_HUMAN	--**	RNA-binding protein Nova-2	IPR004088 (K Homology domain, type 1)	GO:0003723 (RNA binding)
Niben101Scf02479g02013.1	sp|B0JH56|F16PA_MICAN	****	Fructose-1,6-bisphosphatase class 1	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf07586g01002.1	emb|CDX99879.1|	*-*-	BnaC05g23010D [Brassica napus]		
Niben101Scf01697g16001.1	gb|ACI05918.1|	--*-	kinase-like protein pac.x.7.4 [Platanus x acerifolia]		
Niben101Scf08685g00012.1	sp|Q84LH3|WEX_ARATH	*-**	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf05962g03003.1	emb|CDY03393.1|	*-*-	BnaC01g16890D [Brassica napus]		
Niben101Ctg06133g00002.1	sp|P41112|ACT1_PODCA	***-	Actin-1/2	IPR004000 (Actin family)	
Niben101Scf02408g02009.1	AT2G15620.1	****	nitrite reductase 1 LENGTH=586	IPR005117 (Nitrite/Sulfite reductase ferredoxin-like domain), IPR006067 (Nitrite/sulphite reductase 4Fe-4S domain)	GO:0016491 (oxidoreductase activity), GO:0020037 (heme binding), GO:0051536 (iron-sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06437g06009.1	sp|A6MM35|PSAB_BUXMI	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00592g08012.1	sp|Q9NW13|RBM28_HUMAN	*-**	RNA-binding protein 28	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03817g16005.1	sp|A4IRW4|Y2723_GEOTN	--*-	UPF0354 protein GTNG_2723		
Niben101Scf00435g05013.1	emb|CDY25170.1|	--*-	BnaC06g03950D [Brassica napus]		
Niben101Scf00854g11102.1	sp|Q8S8V2|YCF2A_ATRBE	*-*-	Protein Ycf2 A	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf03412g05006.1	ref|NP_001045015.1|	*-*-	product [Oryza sativa Japonica Group]	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02474g03025.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf15568g00037.1	sp|P93788|REMO_SOLTU	***-	Remorin	IPR005516 (Remorin, C-terminal), IPR005518 (Remorin, N-terminal)	
Niben101Ctg11401g00001.1	sp|Q69KJ0|RTL3_ORYSJ	--**	Ribonuclease 3-like protein 3	IPR000999 (Ribonuclease III domain)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0006396 (RNA processing)
Niben101Ctg15984g00001.1	AT2G28560.1	****	DNA repair (Rad51) family protein LENGTH=371	IPR013632 (DNA recombination and repair protein Rad51, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0008094 (DNA-dependent ATPase activity)
Niben101Scf06426g00004.1			Unknown protein		
Niben101Scf03905g02002.1	emb|CDY30362.1|	--*-	BnaA09g09150D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf01020g02003.1	sp|A4XJ48|LEUC_CALS8	*-*-	3-isopropylmalate dehydratase large subunit	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf00253g00003.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021820 (S-locus receptor kinase, C-terminal)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf03267g00053.1	ref|XP_002534597.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF27784.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00774g01001.1	AT4G30950.1	***-	fatty acid desaturase 6 LENGTH=448	IPR005804 (Fatty acid desaturase, type 1)	GO:0006629 (lipid metabolic process)
Niben101Scf00988g06009.1	sp|Q9FJH7|NRT23_ARATH	***-	High affinity nitrate transporter 2.3	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Ctg09680g00002.1			Unknown protein		
Niben101Scf02860g01012.1	sp|Q63ZR0|MAGT1_XENLA	***-	Magnesium transporter protein 1	IPR021149 (Oligosaccharyl transferase complex, subunit OST3/OST6)	
Niben101Scf03325g01006.1	ref|XP_007016476.1|	*-*-	P-hydroxybenzoic acid efflux pump subunit aaeB [Theobroma cacao] gb|EOY34095.1| P-hydroxybenzoic acid efflux pump subunit aaeB [Theobroma cacao]		
Niben101Scf09792g03017.1	sp|Q9UGL1|KDM5B_HUMAN	*-*-	Lysine-specific demethylase 5B	IPR003347 (JmjC domain), IPR003349 (JmjN domain), IPR004198 (Zinc finger, C5HC2-type)	
Niben101Scf32536g00003.1	sp|B0URU2|MNME_HISS2	--*-	tRNA modification GTPase MnmE	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf02105g02002.1	sp|Q8L727|GSTT2_ARATH	*-*-	Glutathione S-transferase T2	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf00103g01006.1	AT5G01850.1	****	Protein kinase superfamily protein LENGTH=333	IPR011009 (Protein kinase-like domain), IPR015784 (Putative serine/threonine-protein kinase, plants)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04439g01026.1	ref|NP_001055589.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf00719g00004.1	AT4G32480.1	***-	Protein of unknown function (DUF506) LENGTH=287	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf02439g00030.1	AT1G27070.1	***-	5'-AMP-activated protein kinase-related LENGTH=532	IPR014756 (Immunoglobulin E-set)	
Niben101Scf03015g07001.1	gb|AES67059.2|	--*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf02354g02014.1	ref|WP_019540397.1|	****	GTP-binding protein YsxC [Proteiniphilum acetatigenes]	IPR006073 (GTP binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00381g03001.1	sp|P70587|LRRC7_RAT	*-*-	Leucine-rich repeat-containing protein 7	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Ctg10966g00002.1			Unknown protein		
Niben101Ctg13288g00002.1	AT1G27760.3	*-*-	interferon-related developmental regulator family protein / IFRD protein family LENGTH=441		
Niben101Scf05711g00003.1	sp|Q810K3|SGPP2_MOUSE	***-	Sphingosine-1-phosphate phosphatase 2	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Scf05017g04002.1	AT3G11320.1	***-	Nucleotide-sugar transporter family protein LENGTH=308	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf04053g03021.1	gb|AIU50013.1|	*-*-	tunicamycin induced 1, partial [Medicago truncatula]		
Niben101Scf04410g09013.1	sp|E9PZJ8|ASCC3_MOUSE	***-	Activating signal cointegrator 1 complex subunit 3	IPR000008 (C2 domain), IPR001650 (Helicase, C-terminal), IPR004179 (Sec63 domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014756 (Immunoglobulin E-set), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf31173g00004.1	sp|O22190|GH33_ARATH	***-	Indole-3-acetic acid-amido synthetase GH3.3	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf00254g06007.1	ref|WP_026179190.1|	***-	phosphoglycerate mutase [Streptomyces sp. R1-NS-10]	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf06769g02003.1	AT5G03730.2	****	Protein kinase superfamily protein LENGTH=821	IPR011009 (Protein kinase-like domain), IPR028324 (Serine/threonine-protein kinase CTR1)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06065g02016.1	sp|Q9LZW3|PUB16_ARATH	*-*-	U-box domain-containing protein 16		
Niben101Scf00923g01003.1			Unknown protein		
Niben101Scf01943g08004.1	sp|Q9FGK4|B561J_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR017214 (Uncharacterised conserved protein UCP037471)	
Niben101Scf01426g05014.1	sp|Q15208|STK38_HUMAN	--**	Serine/threonine-protein kinase 38	IPR011009 (Protein kinase-like domain), IPR015661 (Mitotic checkpoint serine/threonine protein kinase Bub1/Mitotic spindle checkpoint component Mad3)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02564g04007.1	ref|XP_002301132.1|	****	integral membrane family protein [Populus trichocarpa] gb|ABK92649.1| unknown [Populus trichocarpa] gb|EEE80405.1| integral membrane family protein [Populus trichocarpa]	IPR005352 (Erg28)	GO:0016021 (integral component of membrane)
Niben101Scf00234g02006.1			Unknown protein		
Niben101Scf04783g00005.1	sp|Q8W4J2|MPK16_ARATH	*-*-	Mitogen-activated protein kinase 16		
Niben101Scf01773g03004.1	sp|Q9LRP7|ATG8I_ARATH	***-	Autophagy-related protein 8i	IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain)	
Niben101Scf05755g03007.1	AT3G33530.3	***-	Transducin family protein / WD-40 repeat family protein LENGTH=1376	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02844g03005.1	emb|CDX99259.1|	***-	BnaC05g33740D [Brassica napus]		
Niben101Scf01593g04003.1			Unknown protein		
Niben101Scf01056g03007.1	sp|Q9Y225|RNF24_HUMAN	--*-	RING finger protein 24	IPR007527 (Zinc finger, SWIM-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07372g00014.1	sp|Q8GX77|FB316_ARATH	*-*-	F-box protein		
Niben101Scf05830g03002.1	ref|XP_003599472.1|	-**-	Defensin-like protein [Medicago truncatula]		
Niben101Scf05929g01014.1	sp|Q8W4J9|RPP8_ARATH	--*-	Disease resistance protein RPP8		
Niben101Scf19171g01026.1	sp|Q12UG7|RADA_METBU	****	DNA repair and recombination protein RadA	IPR016467 (DNA recombination and repair protein, RecA-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000166 (nucleotide binding), GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006259 (DNA metabolic process), GO:0007131 (reciprocal meiotic recombination), GO:0008094 (DNA-dependent ATPase activity)
Niben101Scf08991g02006.1	emb|CDX97982.1|	*-*-	BnaA06g07330D [Brassica napus]		
Niben101Scf00167g05011.1	sp|Q38898|AKT2_ARATH	--*-	Potassium channel AKT2/3		
Niben101Scf17179g00002.1	sp|Q8RWS6|FRO6_ARATH	****	Ferric reduction oxidase 6	IPR000778 (Cytochrome b245, heavy chain), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02971g00008.1	sp|Q41342|ETR1_SOLLC	*-*-	Ethylene receptor 1	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR029016 (GAF domain-like)	GO:0005515 (protein binding), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf16197g01005.1	sp|Q9FZ96|PUP1_ARATH	***-	Purine permease 1	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf03004g03024.1	sp|A7HPQ6|DAPE_PARL1	***-	Succinyl-diaminopimelate desuccinylase	IPR002933 (Peptidase M20)	GO:0004046 (aminoacylase activity), GO:0005737 (cytoplasm), GO:0006508 (proteolysis), GO:0006520 (cellular amino acid metabolic process), GO:0008152 (metabolic process), GO:0008237 (metallopeptidase activity), GO:0016787 (hydrolase activity)
Niben101Scf00339g06010.1	sp|P40973|PLY_LILLO	****	Pectate lyase	IPR007524 (Pectate lyase, N-terminal), IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	GO:0030570 (pectate lyase activity)
Niben101Scf02768g00007.1	AT4G17080.1	***-	Histone H3 K4-specific methyltransferase SET7/9 family protein LENGTH=513	IPR003409 (MORN motif)	
Niben101Scf04731g02001.1	ref|XP_007011685.1|	--*-	Ubiquitin carboxyl-terminal hydrolase 22 [Theobroma cacao] gb|EOY29304.1| Ubiquitin carboxyl-terminal hydrolase 22 [Theobroma cacao]		
Niben101Scf27982g00001.1			Unknown protein		
Niben101Scf06059g02003.1	AT2G03430.1	***-	Ankyrin repeat family protein LENGTH=240	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf00551g01022.1	sp|Q9FJU9|E1313_ARATH	***-	Glucan endo-1,3-beta-glucosidase 13	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf18348g01032.1	sp|P05100|3MG1_ECOLI	****	DNA-3-methyladenine glycosylase 1	IPR005019 (Methyladenine glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0008725 (DNA-3-methyladenine glycosylase activity)
Niben101Scf03267g00010.1			Unknown protein		
Niben101Scf08373g00010.1	sp|P46270|QCR9_SOLTU	****	Cytochrome b-c1 complex subunit 9	IPR008027 (Cytochrome b-c1 complex subunit 9)	GO:0005743 (mitochondrial inner membrane), GO:0005750 (mitochondrial respiratory chain complex III), GO:0006122 (mitochondrial electron transport, ubiquinol to cytochrome c)
Niben101Scf09654g01010.1	sp|Q0WPN8|CRR60_ARATH	***-	Cysteine-rich repeat secretory protein 60	IPR002902 (Gnk2-homologous domain)	
Niben101Scf04117g10020.1	AT1G58100.1	***-	TCP family transcription factor LENGTH=401	IPR005333 (Transcription factor, TCP)	
Niben101Scf00352g03003.1	sp|Q74L74|RL18_LACJO	***-	50S ribosomal protein L18	IPR005484 (Ribosomal protein L18/L5)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04044g16001.1	sp|O80877|EF4L1_ARATH	***-	Protein ELF4-LIKE 1	IPR009741 (Protein of unknown function DUF1313)	
Niben101Scf02294g04002.1	gb|AET03373.2|	***-	isochorismatase hydrolase family protein [Medicago truncatula]	IPR000868 (Isochorismatase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01954g01024.1	sp|P15349|RPOA1_HALMO	*-**	DNA-directed RNA polymerase subunit A'	IPR006592 (RNA polymerase, N-terminal), IPR007066 (RNA polymerase Rpb1, domain 3), IPR007080 (RNA polymerase Rpb1, domain 1)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf00935g00013.1	AT1G68390.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=408	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf02531g02009.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00338g02016.1	sp|Q9LVP1|TOP3A_ARATH	*-**	DNA topoisomerase 3-alpha	IPR000380 (DNA topoisomerase, type IA)	GO:0003677 (DNA binding), GO:0003917 (DNA topoisomerase type I activity), GO:0006265 (DNA topological change)
Niben101Scf02467g00008.1	gb|AAX92720.1|	--*-	retrotransp , putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf02312g02005.1	ref|XP_003609239.1|	****	E3 ubiquitin-protein ligase MARCH3 [Medicago truncatula] gb|AES91436.1| zinc finger protein [Medicago truncatula]	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf05998g03015.1	AT1G32700.1	***-	PLATZ transcription factor family protein LENGTH=213	IPR006734 (Protein of unknown function DUF597)	
Niben101Ctg02231g00001.1	sp|B0FGA9|GAS2_HELAN	*-*-	Germacrene A synthase 2	IPR008949 (Isoprenoid synthase domain)	
Niben101Scf15568g00038.1	ref|XP_003621359.1|	***-	Ripening-related protein [Medicago truncatula]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf06437g06008.1	sp|Q9LQ55|DRP2B_ARATH	***-	Dynamin-2B	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR011993 (Pleckstrin homology-like domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf06042g03019.1	sp|Q91WD1|RPC4_MOUSE	*-**	DNA-directed RNA polymerase III subunit RPC4	IPR007811 (DNA-directed RNA polymerase III subunit RPC4)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005666 (DNA-directed RNA polymerase III complex), GO:0006383 (transcription from RNA polymerase III promoter)
Niben101Scf04099g06014.1	ref|WP_023508058.1|	*-**	membrane protease subunit stomatin/prohibitin-like protein [Rickettsia monacensis] emb|CDI29842.1| membrane protease subunit stomatin/prohibitin-like protein [Rickettsia monacensis IrR/Munich]	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf02622g11005.1	sp|Q5ZIV1|MTMR2_CHICK	--*-	Myotubularin-related protein 2	IPR004182 (GRAM domain), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf01774g10021.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf15022g00017.1	sp|Q5JKB0|MCM4_ORYSJ	****	DNA replication licensing factor MCM4	IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR004039 (Rubredoxin-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027925 (MCM N-terminal domain)	GO:0003677 (DNA binding), GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0006260 (DNA replication), GO:0006270 (DNA replication initiation), GO:0042555 (MCM complex)
Niben101Scf01001g00004.1	sp|P23432|E13C_TOBAC	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	
Niben101Scf06413g02010.1	sp|Q8FUZ3|UBIE_BRUSU	--**	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf01328g02027.1	AT1G06510.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 376 Blast hits to 369 proteins in 152 species: Archae - 5; Bacteria - 113; Metazoa - 105; Fungi - 46; Plants - 27; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink). LENGTH=277		
Niben101Scf06008g00009.1	AT1G03220.1	***-	Eukaryotic aspartyl protease family protein LENGTH=433	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03026g04003.1	AT4G39700.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=158	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf05605g00051.1	ref|XP_010110759.1|	--*-	50S rib L2 [Morus notabilis]		
Niben101Scf07541g00020.1	AT2G07739.1	*-*-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf00491g04045.1	AT3G18490.1	***-	Eukaryotic aspartyl protease family protein LENGTH=500	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00412g00001.1	sp|Q9FMV4|MED30_ARATH	***-	Mediator of RNA polymerase II transcription subunit 30		
Niben101Scf00262g00006.1	sp|A6MMB7|PSBD_CHLSC	--*-	Photosystem II D2 protein		
Niben101Scf02945g01006.1	sp|Q9UU76|PUF6_SCHPO	***-	Pumilio homology domain family member 6	IPR012959 (CPL), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf15120g01016.1	AT1G14920.1	***-	GRAS family transcription factor family protein LENGTH=533	IPR005202 (Transcription factor GRAS), IPR030027 (Scarecrow-like protein 28)	
Niben101Scf09078g01001.1	sp|Q9JI44|DMAP1_MOUSE	****	DNA methyltransferase 1-associated protein 1	IPR009057 (Homeodomain-like), IPR027109 (SWR1-complex protein 4/DNA methyltransferase 1-associated protein 1)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0006281 (DNA repair), GO:0006338 (chromatin remodeling), GO:0035267 (NuA4 histone acetyltransferase complex), GO:0043967 (histone H4 acetylation), GO:0043968 (histone H2A acetylation)
Niben101Scf04110g00002.1	AT3G58610.1	****	ketol-acid reductoisomerase LENGTH=591	IPR013023 (Acetohydroxy acid isomeroreductase), IPR016040 (NAD(P)-binding domain)	GO:0004455 (ketol-acid reductoisomerase activity), GO:0008652 (cellular amino acid biosynthetic process), GO:0009082 (branched-chain amino acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05095g01003.1	sp|P92792|TOM20_SOLTU	*-*-	Mitochondrial import receptor subunit TOM20		
Niben101Scf03350g00006.1			Unknown protein		
Niben101Scf00159g08007.1	AT3G07790.1	***-	DGCR14-related LENGTH=508	IPR019148 (Nuclear protein DGCR14)	
Niben101Scf03736g00004.1	AT4G28080.1	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=1819	IPR028275 (Clustered mitochondria protein, N-terminal)	
Niben101Scf07939g00002.1	AT4G31170.1	****	Protein kinase superfamily protein LENGTH=412	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf39319g00007.1	sp|Q8VYG3|GUN16_ARATH	*-*-	Endoglucanase 16	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03245g07004.1	AT4G25500.1	***-	arginine/serine-rich splicing factor 35 LENGTH=350	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR029537 (Arginine/serine-rich-splicing factor RSP40/RSP41)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf15133g00001.1	dbj|BAF01865.1|	***-	CER1 protein [Arabidopsis thaliana]	IPR021940 (Uncharacterised domain Wax2, C-terminal)	
Niben101Scf03038g02001.1	ref|WP_026100890.1|	--**	thiol:disulfide interchange protein [Synechococcus sp. PCC 7336]	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf05081g01020.1	sp|P53756|PDR18_YEAST	*-**	ABC transporter ATP-binding protein/permease PDR18	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf01752g02012.1	sp|O94903|PROSC_HUMAN	***-	Proline synthase co-transcribed bacterial homolog protein	IPR011078 (Uncharacterised protein family UPF0001), IPR029066 (PLP-binding barrel)	
Niben101Scf03206g04006.1	AT2G37195.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=133		
Niben101Ctg05524g00001.1	sp|P15688|NU2M_BETVU	*-*-	NADH-ubiquinone oxidoreductase chain 2		
Niben101Scf11557g02002.1	AT4G31320.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=189	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02665g00003.1	AT2G29650.1	***-	phosphate transporter 4;1 LENGTH=512	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02910g01040.1	sp|P93788|REMO_SOLTU	***-	Remorin	IPR005516 (Remorin, C-terminal), IPR005518 (Remorin, N-terminal)	
Niben101Scf16007g00007.1	sp|Q0VFE3|PGAP3_XENTR	***-	Post-GPI attachment to proteins factor 3	IPR007217 (Per1-like)	
Niben101Scf02298g03002.1	AT5G44360.1	****	FAD-binding Berberine family protein LENGTH=532	IPR012951 (Berberine/berberine-like)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00121g00020.1			Unknown protein		
Niben101Scf01922g04015.1	sp|Q9D8Y8|ING5_MOUSE	***-	Inhibitor of growth protein 5	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR024610 (Inhibitor of growth protein, N-terminal), IPR028651 (ING family)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016568 (chromatin modification)
Niben101Scf02309g03019.1	gb|AET02817.2|	*-*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf00231g02003.1	sp|A2SS78|PSB_METLZ	****	Proteasome subunit beta	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf01101g02002.1	sp|Q9FEL7|LAX2_MEDTR	***-	Auxin transporter-like protein 2	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf00472g06014.1	ref|XP_005651523.1|	****	iron-sulfur cluster assembly protein [Coccomyxa subellipsoidea C-169] gb|EIE26979.1| iron-sulfur cluster assembly protein [Coccomyxa subellipsoidea C-169]	IPR001075 (NIF system FeS cluster assembly, NifU, C-terminal)	GO:0005506 (iron ion binding), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf02452g04014.1	sp|Q03164|KMT2A_HUMAN	*-**	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR003616 (Post-SET domain), IPR006560 (AWS domain), IPR011124 (Zinc finger, CW-type)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0018024 (histone-lysine N-methyltransferase activity)
Niben101Scf01082g02022.1	sp|P86137|NLTP1_ACTDE	****	Non-specific lipid-transfer protein 1	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf01339g05012.1	sp|Q9VQG2|APH1_DROME	***-	Gamma-secretase subunit Aph-1	IPR009294 (Gamma-secretase subunit Aph-1)	GO:0016021 (integral component of membrane), GO:0016485 (protein processing), GO:0043085 (positive regulation of catalytic activity)
Niben101Scf13540g04026.1	sp|Q9BX46|RBM24_HUMAN	--**	RNA-binding protein 24	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf02136g01025.1	AT3G15355.1	*-*-	ubiquitin-conjugating enzyme 25 LENGTH=609	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf11116g00002.1	dbj|BAB09105.1|	--*-	retroelement pol polyprotein-like [Arabidopsis thaliana]		
Niben101Scf20768g00028.1	sp|P19704|T1SA_ECOLX	--*-	Type-1 restriction enzyme EcoAI specificity protein		
Niben101Scf15166g03002.1	sp|P38166|SFT2_YEAST	*-**	Protein transport protein SFT2	IPR007305 (Vesicle transport protein, Got1/SFT2-like)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf06590g03001.1			Unknown protein		
Niben101Scf04944g05002.1	sp|Q9C5T4|WRK18_ARATH	****	WRKY transcription factor 18	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01970g07025.1	sp|O04500|COBL6_ARATH	***-	COBRA-like protein 6	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf13254g00005.1	AT1G58030.1	****	cationic amino acid transporter 2 LENGTH=635	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf03671g00001.1	AT1G21790.1	*-*-	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein LENGTH=288		
Niben101Scf05173g05004.1			Unknown protein		
Niben101Scf03445g00001.1	AT5G63000.1	***-	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein LENGTH=201	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Scf10248g01016.1			Unknown protein		
Niben101Scf00505g04002.1	sp|B7ZRU9|EVI1A_XENLA	--*-	MDS1 and EVI1 complex locus protein EVI1-A		
Niben101Scf01350g04014.1	gb|ADM75421.1|	***-	late embryogenesis abundant-like protein, partial [Picea sitchensis]	IPR009646 (Root cap)	
Niben101Scf01594g10007.1	ref|XP_007022483.1|	***-	Peptidyl-prolyl cis-trans isomerase G isoform 1 [Theobroma cacao] gb|EOY14008.1| Peptidyl-prolyl cis-trans isomerase G isoform 1 [Theobroma cacao]	IPR004043 (LCCL domain), IPR013951 (Histone deacetylation protein Rxt3)	
Niben101Scf00305g05041.1	AT4G36520.1	*-*-	Chaperone DnaJ-domain superfamily protein LENGTH=1422	IPR001623 (DnaJ domain)	
Niben101Scf06382g01016.1	sp|Q9LV60|CRR55_ARATH	--*-	Cysteine-rich repeat secretory protein 55	IPR002902 (Gnk2-homologous domain)	
Niben101Scf12024g00003.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]	IPR002182 (NB-ARC)	GO:0043531 (ADP binding)
Niben101Scf04417g00022.1	emb|CDY35069.1|	***-	BnaA06g10790D [Brassica napus]		
Niben101Scf03836g01008.1	sp|P28304|QOR1_ECOLI	****	Quinone oxidoreductase 1	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06736g08001.1	AT5G17680.1	***-	disease resistance protein (TIR-NBS-LRR class), putative LENGTH=1294	IPR000157 (Toll/interleukin-1 receptor homology (TIR) domain), IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0043531 (ADP binding)
Niben101Scf01259g10004.1	sp|P52427|PSA4_SPIOL	****	Proteasome subunit alpha type-4	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf09760g04001.1			Unknown protein		
Niben101Scf05618g02004.1	AT5G15640.1	***-	Mitochondrial substrate carrier family protein LENGTH=323	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf05060g05004.1	sp|Q9VUQ8|DCN1L_DROME	*-*-	DCN1-like protein	IPR014764 (Defective-in-cullin neddylation protein)	
Niben101Scf00869g01010.1			Unknown protein		
Niben101Scf04384g05013.1	AT1G07640.3	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=339	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03341g03009.1	sp|Q9M352|RL362_ARATH	***-	60S ribosomal protein L36-2	IPR000509 (Ribosomal protein L36e)	
Niben101Scf00595g08045.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02372g00002.1	sp|O22775|XXT2_ARATH	*-*-	Xyloglucan 6-xylosyltransferase 2	IPR008630 (Galactosyl transferase)	GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01587g00004.1	sp|Q9SP35|TI172_ARATH	****	Mitochondrial import inner membrane translocase subunit TIM17-2	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	GO:0005744 (mitochondrial inner membrane presequence translocase complex), GO:0006886 (intracellular protein transport), GO:0015450 (P-P-bond-hydrolysis-driven protein transmembrane transporter activity)
Niben101Scf01817g02010.1	emb|CDY18986.1|	--*-	BnaC01g20820D [Brassica napus]		
Niben101Scf14831g00007.1	AT2G12190.1	***-	Cytochrome P450 superfamily protein LENGTH=512	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00687g00010.1	sp|B7KI00|RS8_CYAP7	*-*-	30S ribosomal protein S8	IPR000630 (Ribosomal protein S8)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01660g00001.1	AT3G23740.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=566		
Niben101Scf01616g01008.1			Unknown protein		
Niben101Scf04724g00010.1			Unknown protein		
Niben101Scf05553g06006.1	sp|Q9ZPE7|EXO_ARATH	*-*-	Protein EXORDIUM	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf03404g01010.1	sp|O65420|VAL3_ARATH	*-*-	B3 domain-containing transcription factor VAL3	IPR011124 (Zinc finger, CW-type), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf01373g02007.1			Unknown protein		
Niben101Scf06516g04016.1	sp|Q7SIA8|CUTA_THET8	***-	Divalent-cation tolerance protein CutA	IPR004323 (Divalent ion tolerance protein, CutA)	GO:0010038 (response to metal ion)
Niben101Scf09458g00004.1	sp|P22503|GUN_PHAVU	*-*-	Endoglucanase	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02369g04004.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10412g02014.1	sp|Q5ZLN0|LRC40_CHICK	*-*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat), IPR019164 (Protein of unknown function DUF2053, membrane)	GO:0005515 (protein binding)
Niben101Scf00063g02008.1	ref|XP_002514710.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF47816.1| conserved hypothetical protein [Ricinus communis]	IPR008545 (WEB family)	
Niben101Scf06919g00027.1			Unknown protein		
Niben101Scf02952g02005.1	AT5G04740.1	***-	ACT domain-containing protein LENGTH=301		
Niben101Scf03203g07006.1	sp|A0RY01|RS13_CENSY	***-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH), IPR027437 (30s ribosomal protein S13, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08517g00009.1	emb|CDY20740.1|	*-*-	BnaA02g08800D [Brassica napus]		
Niben101Scf02445g06001.1	sp|Q2QN26|CCA32_ORYSJ	--*-	Cyclin-A3-2	IPR013763 (Cyclin-like)	
Niben101Scf03705g00009.1	sp|Q6C347|FAL1_YARLI	*-**	ATP-dependent RNA helicase FAL1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf05917g00003.1	AT4G22770.1	***-	AT hook motif DNA-binding family protein LENGTH=334	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf05060g02002.1	sp|P81392|MYB06_ANTMA	***-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf10626g00007.1	sp|A1RWU6|RFCL_THEPD	*-*-	Replication factor C large subunit	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02207g05005.1	sp|Q96499|RL44_GOSHI	***-	60S ribosomal protein L44	IPR000552 (Ribosomal protein L44e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Ctg11391g00004.1	AT4G21380.1	*-**	receptor kinase 3 LENGTH=850	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00638g00014.1	AT4G32330.1	***-	TPX2 (targeting protein for Xklp2) protein family LENGTH=437	IPR027329 (TPX2, C-terminal domain)	
Niben101Scf03287g00008.1	sp|Q94758|DYL1_SCHMA	***-	Dynein light chain	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Scf00271g01018.1	sp|Q9JJT0|RCL1_MOUSE	****	RNA 3'-terminal phosphate cyclase-like protein	IPR000228 (RNA 3'-terminal phosphate cyclase)	GO:0003824 (catalytic activity), GO:0005730 (nucleolus), GO:0006396 (RNA processing), GO:0042254 (ribosome biogenesis)
Niben101Scf06301g02003.1	emb|CDY49982.1|	--*-	BnaC03g34390D [Brassica napus]		
Niben101Ctg14350g00001.1	sp|Q5ZJF4|PRDX6_CHICK	*-**	Peroxiredoxin-6	IPR012336 (Thioredoxin-like fold)	GO:0051920 (peroxiredoxin activity), GO:0055114 (oxidation-reduction process)
Niben101Scf39326g00001.1	sp|O49859|C82A4_SOYBN	*-*-	Cytochrome P450 82A4	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf23735g00007.1			Unknown protein		
Niben101Scf01281g03001.1	sp|Q1DCU1|RLMN1_MYXXD	****	Dual-specificity RNA methyltransferase RlmN 1	IPR004383 (Ribosomal RNA large subunit methyltransferase RlmN/Cfr), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0006364 (rRNA processing), GO:0008173 (RNA methyltransferase activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf03329g02003.1	sp|Q5ZM74|RN141_CHICK	--*-	RING finger protein 141	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06975g00013.1	gb|KEH37570.1|	***-	F-box protein [Medicago truncatula]	IPR001810 (F-box domain), IPR005174 (Protein of unknown function DUF295)	GO:0005515 (protein binding)
Niben101Ctg13012g00003.1	sp|Q9XJ35|CLPR1_ARATH	--*-	ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic		
Niben101Scf03313g00020.1	sp|P62203|CALM_PLAF7	--*-	Calmodulin	IPR011992 (EF-hand domain pair), IPR025224 (Cell cycle and apoptosis regulator protein), IPR025954 (DBC1/CARP1 catalytically inactive NUDIX hydrolase domain)	GO:0005509 (calcium ion binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06501g02006.1	AT1G31710.1	****	Copper amine oxidase family protein LENGTH=681	IPR000269 (Copper amine oxidase)	GO:0005507 (copper ion binding), GO:0008131 (primary amine oxidase activity), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding), GO:0055114 (oxidation-reduction process)
Niben101Scf12994g01005.1	sp|C3KX35|MUTS_CLOB6	*-**	DNA mismatch repair protein MutS	IPR000432 (DNA mismatch repair protein MutS, C-terminal), IPR007696 (DNA mismatch repair protein MutS, core), IPR007860 (DNA mismatch repair protein MutS, connector domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf04156g01009.1	sp|Q05090|KLC_STRPU	*-*-	Kinesin light chain	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02996g02001.1	AT5G13150.1	****	exocyst subunit exo70 family protein C1 LENGTH=653	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf01681g02009.1	sp|Q8LPG9|IQD14_ARATH	***-	Protein IQ-DOMAIN 14	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf03326g04013.1	emb|CDY16984.1|	*-*-	BnaC09g41110D [Brassica napus]	IPR008545 (WEB family)	
Niben101Scf02836g00008.1	sp|Q76FK4|NOL8_HUMAN	*-*-	Nucleolar protein 8	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01146g09022.1	sp|A8ABN0|SYM_IGNH4	****	Methionine--tRNA ligase	IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding), IPR012340 (Nucleic acid-binding, OB-fold), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR015413 (Methionyl/Leucyl tRNA synthetase), IPR029038 (Methionyl-tRNA synthetase, Zn-domain)	GO:0000049 (tRNA binding), GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004825 (methionine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006431 (methionyl-tRNA aminoacylation)
Niben101Scf00415g00012.1	ref|XP_003596170.1|	***-	1-aminocyclopropane-1-carboxylate oxidase-like protein [Medicago truncatula]	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf02250g02001.1	emb|CDX80332.1|	*-*-	BnaC09g34100D [Brassica napus]	IPR021584 (Thylakoid soluble phosphoprotein TSP9)	
Niben101Ctg14561g00002.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01764g03011.1	sp|Q9FXT6|PEX14_ARATH	*-**	Peroxisomal membrane protein PEX14	IPR006785 (Peroxisome membrane anchor protein Pex14p, N-terminal), IPR025655 (Peroxisomal membrane protein 14)	GO:0005515 (protein binding), GO:0005778 (peroxisomal membrane), GO:0016560 (protein import into peroxisome matrix, docking)
Niben101Scf08584g00013.1	AT2G26310.1	***-	Chalcone-flavanone isomerase family protein LENGTH=398	IPR016087 (Chalcone isomerase)	GO:0016872 (intramolecular lyase activity)
Niben101Scf03517g00005.1	AT4G02120.1	****	CTP synthase family protein LENGTH=556	IPR004468 (CTP synthase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003883 (CTP synthase activity), GO:0006221 (pyrimidine nucleotide biosynthetic process)
Niben101Scf03309g07010.1	AT1G09310.1	***-	Protein of unknown function, DUF538 LENGTH=179	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf05057g04016.1	sp|Q9SI37|WRKY1_ARATH	--**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00574g04011.1	ref|XP_007019185.1|	*-**	Zinc ion binding, putative isoform 5 [Theobroma cacao] gb|EOY16410.1| Zinc ion binding, putative isoform 5 [Theobroma cacao]	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027370 (RING-type zinc-finger, LisH dimerisation motif)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05374g01018.1	sp|Q9NTI5|PDS5B_HUMAN	*-*-	Sister chromatid cohesion protein PDS5 homolog B	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01671g06021.1	sp|Q8GYA6|PS13B_ARATH	***-	26S proteasome non-ATPase regulatory subunit 13 homolog B	IPR000717 (Proteasome component (PCI) domain)	GO:0005515 (protein binding)
Niben101Scf02248g00007.1	sp|P35687|RS21_ORYSJ	***-	40S ribosomal protein S21	IPR001931 (Ribosomal protein S21e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01689g04015.1	sp|Q9SW09|RS101_ARATH	*-*-	40S ribosomal protein S10-1	IPR005326 (Plectin/S10, N-terminal)	
Niben101Scf14273g00023.1	sp|Q8PWF5|MSRB_METMA	-***	Peptide methionine sulfoxide reductase MsrB	IPR011057 (Mss4-like)	GO:0033743 (peptide-methionine (R)-S-oxide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01182g03011.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf06223g00027.1	AT2G38050.1	****	3-oxo-5-alpha-steroid 4-dehydrogenase family protein LENGTH=262	IPR016636 (3-oxo-5-alpha-steroid 4-dehydrogenase)	GO:0003865 (3-oxo-5-alpha-steroid 4-dehydrogenase activity), GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0008202 (steroid metabolic process), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0055114 (oxidation-reduction process)
Niben101Scf08091g00022.1	AT5G18010.1	***-	SAUR-like auxin-responsive protein family LENGTH=90	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01779g04012.1	sp|Q9FLJ2|NC100_ARATH	*-*-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00478g02010.1	AT5G28770.2	*-**	bZIP transcription factor family protein LENGTH=314	IPR004827 (Basic-leucine zipper domain), IPR020983 (Basic leucine-zipper, C-terminal)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01105g00001.1	sp|P12360|CB11_SOLLC	***-	Chlorophyll a-b binding protein 6A, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf01515g08001.1			Unknown protein		
Niben101Scf02798g05009.1	sp|Q93Y38|GDT13_ARATH	***-	GDT1-like protein 3	IPR001727 (Uncharacterised protein family UPF0016)	GO:0016020 (membrane)
Niben101Scf01453g05015.1	ref|XP_002524325.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38065.1| conserved hypothetical protein [Ricinus communis]	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf04748g01014.1	ref|XP_002515369.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF46818.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf08711g01025.1	sp|Q9SID1|BBX25_ARATH	*-*-	B-box zinc finger protein 25		
Niben101Scf06348g00006.1	sp|Q5R831|S35B3_PONAB	***-	Adenosine 3'-phospho 5'-phosphosulfate transporter 2	IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf11962g00016.1	sp|Q4IBL8|DML1_GIBZE	*-*-	Protein DML1	IPR003008 (Tubulin/FtsZ, GTPase domain), IPR029209 (DML1/Misato, tubulin domain)	
Niben101Scf01440g02013.1	sp|Q9X248|FABG_THEMA	****	3-oxoacyl-[acyl-carrier-protein] reductase FabG	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01027g01014.1	AT4G23650.1	****	calcium-dependent protein kinase 6 LENGTH=529	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01970g02002.1	emb|CDY45547.1|	--*-	BnaCnng13060D [Brassica napus]		
Niben101Scf02849g00006.1	emb|CDY54168.1|	***-	BnaC07g48580D [Brassica napus]		
Niben101Scf03659g02003.1	sp|P22242|DRPE_CRAPL	***-	Desiccation-related protein PCC13-62		
Niben101Scf00174g00038.1	gb|AAO26660.1|	***-	fertilization-independent endosperm protein 2 [Zea mays]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf03894g01002.1	ref|XP_007039411.1|	***-	Zinc finger matrin-type protein 1, putative isoform 1 [Theobroma cacao] gb|EOY23912.1| Zinc finger matrin-type protein 1, putative isoform 1 [Theobroma cacao]		
Niben101Scf01448g02002.1			Unknown protein		
Niben101Scf01388g01002.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02957g01014.1	ref|XP_007022019.1|	***-	Gb:AAD10662.1, putative isoform 5 [Theobroma cacao] gb|EOY13544.1| Gb:AAD10662.1, putative isoform 5 [Theobroma cacao]		
Niben101Scf06482g01011.1	sp|B7VSB8|RNB_VIBTL	*-*-	Exoribonuclease 2	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf06236g00002.1	sp|B8EJI6|TSAD_METSB	****	tRNA N6-adenosine threonylcarbamoyltransferase	IPR000905 (Gcp-like domain), IPR017861 (Kae1/YgjD family)	GO:0004222 (metalloendopeptidase activity), GO:0070526 (threonylcarbamoyladenosine biosynthetic process)
Niben101Scf04995g00002.1	sp|Q64092|TFE3_MOUSE	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf07673g03005.1	sp|A8AFL6|RSMF_CITK8	*-**	Ribosomal RNA small subunit methyltransferase F	IPR015947 (PUA-like domain), IPR023267 (RNA (C5-cytosine) methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0008168 (methyltransferase activity)
Niben101Scf03006g10003.1	sp|Q75FA7|COX16_ASHGO	-***	Cytochrome c oxidase assembly protein COX16, mitochondrial	IPR020164 (Cytochrome c oxidase assembly protein COX16)	GO:0031966 (mitochondrial membrane)
Niben101Scf06467g05001.1	sp|P34011|ATI_VAR67	--*-	A-type inclusion protein A25 homolog		
Niben101Scf18000g00032.1	sp|Q94AU2|SEC22_ARATH	****	25.3 kDa vesicle transport protein	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf08407g00008.1	sp|Q03701|CEBPZ_HUMAN	*-**	CCAAT/enhancer-binding protein zeta	IPR005612 (CCAAT-binding factor), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf09559g03004.1	emb|CDY24730.1|	*-*-	BnaC04g13350D [Brassica napus]		
Niben101Scf09467g00005.1	sp|Q6DI40|TTC33_DANRE	*-*-	Tetratricopeptide repeat protein 33	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Ctg11841g00001.1			Unknown protein		
Niben101Scf02197g02004.1	AT1G77480.1	***-	Eukaryotic aspartyl protease family protein LENGTH=466	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf10333g00029.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf01420g01001.1	sp|Q9C658|DCP5_ARATH	*-*-	Protein decapping 5	IPR019050 (FDF domain), IPR025768 (TFG box)	
Niben101Scf07742g00001.1	sp|Q8H1U5|APC2_ARATH	****	Anaphase-promoting complex subunit 2	IPR001373 (Cullin, N-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR014786 (Anaphase-promoting complex subunit 2, C-terminal)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf05938g01050.1	AT2G15780.1	*-*-	Cupredoxin superfamily protein LENGTH=257	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf04331g06017.1	ref|YP_009045783.1|	***-	orf109b (mitochondrion) [Batis maritima] gb|AIC83386.1| orf109b (mitochondrion) [Batis maritima]		
Niben101Scf05993g01016.1	sp|P93755|C3H30_ARATH	***-	Zinc finger CCCH domain-containing protein 30	IPR000571 (Zinc finger, CCCH-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf04852g00006.1	ref|XP_002524503.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37943.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07465g00005.1	ref|XP_007017719.1|	***-	Cell growth defect factor-2 isoform 1 [Theobroma cacao] gb|EOY14944.1| Cell growth defect factor-2 isoform 1 [Theobroma cacao]		
Niben101Scf06851g01015.1			Unknown protein		
Niben101Scf06000g03001.1			Unknown protein		
Niben101Scf07607g01001.1	AT4G33920.1	****	Protein phosphatase 2C family protein LENGTH=380	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf14639g00005.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf08407g00004.1	AT3G14205.1	***-	Phosphoinositide phosphatase family protein LENGTH=808	IPR002013 (SAC domain), IPR030213 (Phosphoinositide phosphatase SAC)	GO:0007033 (vacuole organization), GO:0036092 (phosphatidylinositol-3-phosphate biosynthetic process), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf04506g05001.1	emb|CDY53602.1|	--*-	BnaC09g51900D [Brassica napus]		
Niben101Scf01274g03002.1	AT2G41290.1	****	strictosidine synthase-like 2 LENGTH=376	IPR004141 (Strictosidine synthase)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf01907g00003.1	sp|Q9FKK7|XYLA_ARATH	****	Xylose isomerase	IPR001998 (Xylose isomerase)	GO:0005975 (carbohydrate metabolic process), GO:0009045 (xylose isomerase activity)
Niben101Scf03538g02002.1	dbj|BAA96881.1|	--*-	mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf14922g00048.1	sp|Q9FI80|PP425_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04015g01008.1	sp|Q9FZ59|PEPR2_ARATH	***-	Leucine-rich repeat receptor-like protein kinase PEPR2	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf01027g01010.1	dbj|BAD35335.1|	*-*-	loricrin-like [Oryza sativa Japonica Group]		
Niben101Scf07576g01015.1	sp|P92949|FRO2_ARATH	****	Ferric reduction oxidase 2	IPR013121 (Ferric reductase, NAD binding), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02373g02002.1	emb|CDX79249.1|	***-	BnaC06g20540D [Brassica napus]	IPR001202 (WW domain)	GO:0005515 (protein binding)
Niben101Scf01623g09005.1	sp|Q9FJ10|GAT16_ARATH	****	GATA transcription factor 16	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03049g00001.1	sp|O88751|CABP1_RAT	--**	Calcium-binding protein 1	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf10314g03002.1	sp|Q7SXR3|MAEA_DANRE	***-	Macrophage erythroblast attacher	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013144 (CRA domain), IPR024964 (CTLH/CRA C-terminal to LisH motif domain), IPR027370 (RING-type zinc-finger, LisH dimerisation motif)	GO:0005515 (protein binding)
Niben101Scf03307g04011.1	AT4G29240.1	***-	Leucine-rich repeat (LRR) family protein LENGTH=415	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf00440g01014.1	sp|Q605C5|RS14_METCA	*-*-	30S ribosomal protein S14	IPR001209 (Ribosomal protein S14)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05917g00001.1	sp|Q84W04|CNIH4_ARATH	***-	Protein cornichon homolog 4	IPR003377 (Cornichon)	GO:0016020 (membrane), GO:0035556 (intracellular signal transduction)
Niben101Scf02829g03014.1	AT3G63290.1	***-	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=403	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf01349g04004.1	sp|Q6LXN1|RS13_METMP	***-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH), IPR027437 (30s ribosomal protein S13, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03264g01004.1	sp|P80680|FTRV_MAIZE	*-*-	Ferredoxin-thioredoxin reductase, variable chain	IPR003698 (Lipoyl synthase), IPR008990 (Electron transport accessory protein-like domain)	GO:0009107 (lipoate biosynthetic process), GO:0015979 (photosynthesis), GO:0016992 (lipoate synthase activity), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf03565g02016.1	sp|Q04960|DNJH_CUCSA	*-*-	DnaJ protein homolog		
Niben101Scf10324g01001.1	AT2G05620.1	***-	proton gradient regulation 5 LENGTH=133		
Niben101Scf00709g07012.1	AT2G23093.1	***-	Major facilitator superfamily protein LENGTH=449	IPR008509 (Molybdate-anion transporter MOT2), IPR020846 (Major facilitator superfamily domain)	GO:0015098 (molybdate ion transmembrane transporter activity), GO:0015689 (molybdate ion transport), GO:0016021 (integral component of membrane)
Niben101Scf20325g00006.1	sp|Q94AH6|CUL1_ARATH	****	Cullin-1	IPR001373 (Cullin, N-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf01985g03019.1	sp|Q7T3I7|RBM38_XENLA	*-**	RNA-binding protein 38	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03164g02013.1	sp|P93354|H2B_TOBAC	***-	Histone H2B	IPR009072 (Histone-fold)	GO:0046982 (protein heterodimerization activity)
Niben101Scf03309g04005.1	AT3G28670.1	*-*-	oxidoreductase, zinc-binding dehydrogenase family protein LENGTH=491	IPR029454 (ODR-4-like)	
Niben101Scf02114g00012.1	AT5G14060.1	****	Aspartate kinase family protein LENGTH=544	IPR001341 (Aspartate kinase domain)	GO:0004072 (aspartate kinase activity), GO:0008152 (metabolic process), GO:0008652 (cellular amino acid biosynthetic process), GO:0016597 (amino acid binding)
Niben101Scf01573g01003.1	AT1G17440.1	*-**	Transcription initiation factor TFIID subunit A LENGTH=683	IPR009072 (Histone-fold)	GO:0005669 (transcription factor TFIID complex), GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity)
Niben101Scf01757g01005.1	sp|Q9LZQ1|TBL6_ARATH	***-	Protein trichome birefringence-like 6	IPR026057 (PC-Esterase)	
Niben101Scf04665g02021.1	AT5G06850.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=794	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf05030g04004.1	AT5G42190.1	*-**	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein LENGTH=171	IPR016072 (SKP1 component, dimerisation)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf04015g00003.1	ref|XP_002512326.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF49778.1| conserved hypothetical protein [Ricinus communis]	IPR021410 (The fantastic four family)	
Niben101Scf13429g04019.1	sp|Q3T056|LDH6B_BOVIN	****	L-lactate dehydrogenase A-like 6B	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0004459 (L-lactate dehydrogenase activity), GO:0005975 (carbohydrate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf01697g19003.1	sp|O82302|P2C29_ARATH	*-*-	Protein phosphatase 2C 29	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf13962g01022.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf00966g00007.1			Unknown protein		
Niben101Scf04410g09016.1	sp|Q8XKG8|CLPB_CLOPE	***-	Chaperone protein ClpB	IPR001270 (ClpA/B family), IPR004176 (Clp, N-terminal), IPR019489 (Clp ATPase, C-terminal), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028299 (ClpA/B, conserved site 2)	GO:0005524 (ATP binding), GO:0019538 (protein metabolic process)
Niben101Scf02942g00022.1			Unknown protein		
Niben101Scf02160g00014.1	ref|XP_002535265.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF27117.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06277g00007.1	sp|O48723|PLP2_ARATH	***-	Patatin-like protein 2	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf07805g01006.1	sp|Q6NKW9|E138_ARATH	***-	Glucan endo-1,3-beta-glucosidase 8	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf11122g01009.1	AT5G19473.1	***-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=99		
Niben101Scf02132g02007.1	sp|Q2YYA2|RNZ_STAAB	***-	Ribonuclease Z	IPR001279 (Beta-lactamase-like)	
Niben101Scf01775g01017.1	sp|Q8RY25|NU98A_ARATH	--*-	Nuclear pore complex protein NUP98A		
Niben101Scf02990g02003.1	ref|XP_002522077.1|	--*-	Pinin, putative [Ricinus communis] gb|EEF40277.1| Pinin, putative [Ricinus communis]		
Niben101Scf33551g00001.1	sp|Q40592|RL10_TOBAC	***-	60S ribosomal protein L10	IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09108g00003.1	gb|ADW66129.1|	-**-	late embryogenesis abundant protein Lea5 [Solanum nigrum]	IPR004926 (Late embryogenesis abundant protein, LEA-5)	GO:0006950 (response to stress)
Niben101Scf01594g07001.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07488g01014.1	gb|AES59710.2|	*-*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf16824g00012.1	emb|CDY27722.1|	***-	BnaA05g31310D [Brassica napus]		
Niben101Scf00766g00013.1	gb|KEH20772.1|	***-	lysine ketoglutarate reductase trans-splicing protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf14274g00004.1	gb|AAD26892.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf02581g02005.1	ref|XP_003622843.1|	--**	Helicase-like protein [Medicago truncatula]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf10941g01004.1	sp|Q1GE28|FOLD_RUEST	***-	Bifunctional protein FolD	IPR000672 (Tetrahydrofolate dehydrogenase/cyclohydrolase)	GO:0003824 (catalytic activity), GO:0004488 (methylenetetrahydrofolate dehydrogenase (NADP+) activity), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf01159g00001.1	sp|Q94JU3|CSN7_ARATH	***-	COP9 signalosome complex subunit 7		
Niben101Scf15928g00003.1	sp|Q9SYK0|HEXO2_ARATH	*-**	Beta-hexosaminidase 2	IPR017853 (Glycoside hydrolase superfamily), IPR025705 (Beta-hexosaminidase), IPR029018 (Chitobiase/beta-hexosaminidase domain 2-like)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004563 (beta-N-acetylhexosaminidase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02929g05017.1	gb|ACZ52183.1|	***-	ribosomal protein L10 (mitochondrion) [Digitalis purpurea]		
Niben101Scf02790g05016.1	AT2G06010.1	***-	OBP3-responsive gene 4 LENGTH=188		
Niben101Scf01256g00003.1	AT3G06240.1	***-	F-box family protein LENGTH=427	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf22885g00006.1	sp|Q94K41|SDR3B_ARATH	****	Short-chain dehydrogenase reductase 3b	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01453g09001.1	ref|XP_002869709.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH45968.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf01036g07007.1	sp|O23144|PPI1_ARATH	****	Proton pump-interactor 1	IPR029669 (Proton pump-interactor)	GO:0005783 (endoplasmic reticulum), GO:0005886 (plasma membrane), GO:0010155 (regulation of proton transport)
Niben101Scf05270g01004.1	dbj|BAD66730.1|	***-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf38709g00001.1	sp|Q9T076|ENL2_ARATH	--*-	Early nodulin-like protein 2	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf02725g06010.1	sp|D6R901|U17LL_HUMAN	*-**	Ubiquitin carboxyl-terminal hydrolase 17-like protein 21	IPR002893 (Zinc finger, MYND-type), IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf06848g09002.1	sp|O80340|ERF78_ARATH	****	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00792g00006.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf02366g03008.1	AT4G36660.1	***-	Protein of unknown function (DUF1195) LENGTH=179	IPR010608 (Protein of unknown function DUF1195)	
Niben101Scf02293g03027.1	sp|Q9S7N7|PSAG_ARATH	****	Photosystem I reaction center subunit V, chloroplastic	IPR000549 (Photosystem I PsaG/PsaK protein), IPR023618 (Photosystem I PsaG/PsaK domain)	GO:0009522 (photosystem I), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0016168 (chlorophyll binding)
Niben101Scf02752g15007.1	sp|O82248|NFYB5_ARATH	***-	Nuclear transcription factor Y subunit B-5	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf00650g01008.1	sp|Q5U780|LIP_BACSP	--*-	Lipase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04785g01015.1	AT4G36950.1	*-**	mitogen-activated protein kinase kinase kinase 21 LENGTH=336	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00087g02010.1	sp|Q7S6S4|TIM16_NEUCR	****	Mitochondrial import inner membrane translocase subunit tim16	IPR005341 (Mitochondrial import inner membrane translocase subunit Tim16)	GO:0005744 (mitochondrial inner membrane presequence translocase complex), GO:0030150 (protein import into mitochondrial matrix)
Niben101Scf13118g00001.1	sp|Q8LGG8|USPAL_ARATH	****	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf09996g01001.1	AT3G13510.1	***-	Protein of Unknown Function (DUF239) LENGTH=419	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf09792g03018.1	sp|Q9XHP0|11S2_SESIN	*-*-	11S globulin seed storage protein 2	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf10855g08005.1	AT5G22250.1	***-	Polynucleotidyl transferase, ribonuclease H-like superfamily protein LENGTH=278	IPR006941 (Ribonuclease CAF1), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Scf01934g04017.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11362g01011.1	AT4G02930.1	*-**	GTP binding Elongation factor Tu family protein LENGTH=454	IPR005225 (Small GTP-binding protein domain), IPR006298 (GTP-binding protein TypA), IPR009000 (Translation protein, beta-barrel domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf05554g06005.1	sp|Q6GQD1|CYFP2_XENLA	***-	Cytoplasmic FMR1-interacting protein 2	IPR008081 (Cytoplasmic FMR1-interacting)	
Niben101Scf02752g00014.1	sp|Q9Y225|RNF24_HUMAN	--*-	RING finger protein 24	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02015g01014.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10574g00001.1	sp|Q9LZQ1|TBL6_ARATH	***-	Protein trichome birefringence-like 6	IPR026057 (PC-Esterase)	
Niben101Scf03141g07008.1	sp|Q84LH3|WEX_ARATH	*-**	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf05829g00016.1	AT2G04410.1	***-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=73	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf11894g00001.1	AT2G47230.2	*-*-	DOMAIN OF UNKNOWN FUNCTION 724 6 LENGTH=709	IPR007930 (Protein of unknown function DUF724), IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf00905g00006.1	sp|A8MQA3|PP330_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf01768g04009.1	sp|B8H4E1|RL16_CAUCN	***-	50S ribosomal protein L16	IPR000114 (Ribosomal protein L16), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf00234g01014.1	sp|Q9C5V5|GLR28_ARATH	****	Glutamate receptor 2.8	IPR017103 (Ionotropic glutamate receptor, plant), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf02733g00008.1	sp|Q7F613|SCAM2_ORYSJ	****	Secretory carrier-associated membrane protein 2	IPR007273 (SCAMP)	GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf13002g03015.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf14937g00009.1	sp|Q11QA8|RS12_CYTH3	*-**	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf00662g01006.1			Unknown protein	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf04784g05007.1			Unknown protein		
Niben101Scf01176g01035.1	sp|Q8L7R2|KHSE_ARATH	***-	Homoserine kinase	IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0005524 (ATP binding)
Niben101Scf04387g01024.1	sp|Q67ZB3|FRL3_ARATH	***-	FRIGIDA-like protein 3	IPR012474 (Frigida-like)	
Niben101Scf00520g06006.1	sp|Q9C519|WRKY6_ARATH	****	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01343g00013.1	AT1G54850.1	*-*-	HSP20-like chaperones superfamily protein LENGTH=206	IPR008978 (HSP20-like chaperone)	
Niben101Scf09955g01009.1	AT2G19600.1	*-*-	K+ efflux antiporter 4 LENGTH=592		
Niben101Ctg14192g00001.1	AT4G17720.1	***-	RNA-binding (RRM/RBD/RNP motifs) family protein LENGTH=313		
Niben101Scf03204g01009.1			Unknown protein		
Niben101Scf01531g02001.1	sp|Q9SAR1|MADS8_ORYSJ	****	MADS-box transcription factor 8	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07109g04011.1	sp|P01122|RHO_APLCA	****	Ras-like GTP-binding protein RHO	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf08535g04010.1	sp|P57294|DKSA_BUCAI	--*-	RNA polymerase-binding transcription factor DksA		
Niben101Scf06183g03009.1	AT2G42590.3	***-	general regulatory factor 9 LENGTH=276	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf02849g01002.1	gb|KEH43386.1|	--*-	cytochrome P450 family protein [Medicago truncatula]		
Niben101Scf06954g02002.1	AT1G25270.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=355	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Ctg04900g00001.1	sp|Q9BY66|KDM5D_HUMAN	*-*-	Lysine-specific demethylase 5D		
Niben101Scf05824g01001.1			Unknown protein		
Niben101Scf01051g01020.1	ref|XP_003611337.1|	*-*-	DNA mismatch repair protein mutS [Medicago truncatula]		
Niben101Scf01623g07001.1	gb|ACG39131.1|	****	transferase, transferring glycosyl groups [Zea mays]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf09489g00003.1	sp|Q9XHS0|RS12_HORVU	***-	40S ribosomal protein S12	IPR000530 (Ribosomal protein S12e), IPR029064 (50S ribosomal protein L30e-like)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf14606g01006.1	emb|CDY17988.1|	***-	BnaC03g30600D [Brassica napus]		
Niben101Scf02467g01034.1	AT2G10950.1	*-*-	BSD domain-containing protein LENGTH=336		
Niben101Scf02513g02003.1			Unknown protein		
Niben101Scf02290g08007.1			Unknown protein	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf15568g00036.1	sp|Q9LQ81|ADF10_ARATH	****	Actin-depolymerizing factor 10	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf05588g13002.1	sp|Q8VYI9|NLTL5_ARATH	****	Non-specific lipid-transfer protein-like protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf01243g01005.1	sp|Q9LVF9|PP245_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01529g03006.1	sp|A2AU72|ARMC3_MOUSE	--*-	Armadillo repeat-containing protein 3	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02893g02002.1			Unknown protein		
Niben101Scf07372g00013.1	sp|O64788|FBD33_ARATH	***-	FBD-associated F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01798g02004.1	sp|Q5R8F7|PABP1_PONAB	*-**	Polyadenylate-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01552g02001.1	sp|Q8BX70|VP13C_MOUSE	--*-	Vacuolar protein sorting-associated protein 13C		
Niben101Scf01001g00005.1	sp|P23432|E13C_TOBAC	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	
Niben101Scf02515g00011.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf08566g04013.1	sp|Q9FY75|POT7_ARATH	****	Potassium transporter 7	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf15836g03011.1	sp|Q7DLR9|PSB4_ARATH	*-*-	Proteasome subunit beta type-4	IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf05629g01016.1	AT2G37650.1	*-*-	GRAS family transcription factor LENGTH=718		
Niben101Scf00854g10034.1	sp|P09003|MI25_TOBAC	*-**	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf10002g00006.1	sp|A4J136|RS13_DESRM	***-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH), IPR027437 (30s ribosomal protein S13, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01020g02004.1	AT2G33320.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=602	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf05969g00011.1	sp|Q96JC1|VPS39_HUMAN	***-	Vam6/Vps39-like protein	IPR000547 (Clathrin, heavy chain/VPS, 7-fold repeat), IPR001180 (Citron-like), IPR019452 (Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1), IPR019453 (Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2)	GO:0005083 (small GTPase regulator activity), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport)
Niben101Scf00276g04009.1	sp|C4Z0V2|ARLY_EUBE2	*-**	Argininosuccinate lyase	IPR000362 (Fumarate lyase family), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0004056 (argininosuccinate lyase activity), GO:0042450 (arginine biosynthetic process via ornithine)
Niben101Scf16812g01015.1	AT5G48970.1	***-	Mitochondrial substrate carrier family protein LENGTH=339	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf28617g00001.1	sp|Q6GL41|MCM4_XENTR	--*-	DNA replication licensing factor mcm4		
Niben101Scf08478g01010.1	AT4G16195.1	***-	Plant self-incompatibility protein S1 family LENGTH=161	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf02618g03010.1	gb|KEH41335.1|	*-*-	linker histone H1 and h5 family protein [Medicago truncatula]	IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf03302g04003.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01302g00001.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00350g04009.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03036g04004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03045g09001.1	AT1G70570.2	***-	anthranilate phosphoribosyltransferase, putative LENGTH=632	IPR000312 (Glycosyl transferase, family 3)	GO:0008152 (metabolic process), GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf05929g01012.1	AT2G33360.1	***-	Protein of unknown function (DUF3527) LENGTH=603	IPR021916 (Protein of unknown function DUF3527)	
Niben101Scf10336g01001.1	AT1G70170.1	****	matrix metalloproteinase LENGTH=378	IPR021190 (Peptidase M10A), IPR024079 (Metallopeptidase, catalytic domain)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity), GO:0008270 (zinc ion binding), GO:0031012 (extracellular matrix)
Niben101Scf02006g03006.1	sp|A1CXK7|DED1_NEOFI	****	ATP-dependent RNA helicase ded1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf00127g01005.1	AT1G52360.2	***-	Coatomer, beta' subunit LENGTH=970	IPR016453 (Coatomer beta' subunit (COPB2))	GO:0005198 (structural molecule activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf01085g07007.1	gb|KEH35570.1|	*-*-	nucleotide/sugar transporter family protein [Medicago truncatula]		
Niben101Scf02145g10013.1	sp|Q7Y0W3|EHD1_ORYSI	*-*-	Two-component response regulator EHD1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07829g03020.1	sp|Q9ZUA9|Y2181_ARATH	*-*-	PHD finger protein		
Niben101Scf03240g01006.1	sp|P00965|GLNA3_PHAVU	*-*-	Glutamine synthetase N-1	IPR014746 (Glutamine synthetase/guanido kinase, catalytic domain)	GO:0003824 (catalytic activity), GO:0004356 (glutamate-ammonia ligase activity), GO:0006807 (nitrogen compound metabolic process)
Niben101Scf05449g02010.1	AT4G26180.1	***-	Mitochondrial substrate carrier family protein LENGTH=325	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf00536g00002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03446g12003.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf02509g12006.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01429g00010.1	sp|Q8LFJ8|RFA2B_ARATH	****	Replication protein A 32 kDa subunit B	IPR014646 (Replication factor A protein 2)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0006310 (DNA recombination)
Niben101Scf07586g01001.1	AT5G01990.1	***-	Auxin efflux carrier family protein LENGTH=431	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00420g09001.1	AT4G01070.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01272g00016.1	ref|XP_002883165.1|	*-**	DNA binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH59424.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]	IPR007608 (Senescence regulator S40), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Ctg08762g00001.1	ref|YP_005090400.1|	*-*-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf01657g03002.1	AT5G53590.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=142	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf13411g05036.1	sp|Q6ZMY6|WDR88_HUMAN	*-*-	WD repeat-containing protein 88	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05395g03022.1	AT1G20830.1	***-	multiple chloroplast division site 1 LENGTH=349		
Niben101Scf04717g03004.1	sp|Q61171|PRDX2_MOUSE	****	Peroxiredoxin-2	IPR012336 (Thioredoxin-like fold)	GO:0016209 (antioxidant activity), GO:0016491 (oxidoreductase activity), GO:0051920 (peroxiredoxin activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02461g07005.1	AT4G34660.1	***-	SH3 domain-containing protein LENGTH=368	IPR001452 (SH3 domain), IPR027267 (Arfaptin homology (AH) domain/BAR domain)	GO:0005515 (protein binding), GO:0005737 (cytoplasm)
Niben101Scf03376g01001.1	sp|Q27GI3|NAT6_ARATH	*-**	Nucleobase-ascorbate transporter 6	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01999g07017.1	sp|Q7Z2H8|S36A1_HUMAN	--*-	Proton-coupled amino acid transporter 1	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf01062g03002.1			Unknown protein		
Niben101Scf06395g03008.1			Unknown protein		
Niben101Scf02045g04003.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf04959g00001.1	sp|A4W9T2|MDTK_ENT38	*-*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf05720g02003.1	sp|Q93WC4|IAA29_ARATH	***-	Auxin-responsive protein IAA29	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf10416g00004.1			Unknown protein		
Niben101Scf01124g00004.1	gb|ABR25514.1|	--*-	sterol carrier protein 2 [Oryza sativa Indica Group]		
Niben101Scf02836g01003.1	sp|A7HBM7|RS17_ANADF	***-	30S ribosomal protein S17	IPR000266 (Ribosomal protein S17), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09057g00007.1	AT2G46140.1	***-	Late embryogenesis abundant protein LENGTH=166	IPR004864 (Late embryogenesis abundant protein, LEA-14), IPR013783 (Immunoglobulin-like fold)	GO:0009269 (response to desiccation)
Niben101Scf00592g08011.1	emb|CAA70700.1|	--*-	transformer-SR ribonucleoprotein [Nicotiana tabacum]		
Niben101Scf02223g06007.1	sp|Q9LS40|ASPG1_ARATH	--*-	Protein ASPARTIC PROTEASE IN GUARD CELL 1		
Niben101Scf08199g00003.1	gb|AGG55716.1|	--*-	cyclin-dependent protein kinase inhibitor Siamese [Gossypium arboreum]		
Niben101Scf03057g00001.1			Unknown protein	IPR021775 (Protein of unknown function DUF3339)	
Niben101Scf06650g05012.1	sp|Q55721|FBT_SYNY3	***-	Folate-biopterin transporter	IPR004324 (Folate-biopterin transporter), IPR020846 (Major facilitator superfamily domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf05245g00008.1	AT4G19650.1	****	Mitochondrial transcription termination factor family protein LENGTH=575	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04049g00023.1	sp|P46032|PTR2_ARATH	***-	Protein NRT1/ PTR FAMILY 8.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00870g15008.1	sp|Q58860|THRC_METJA	***-	Threonine synthase	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme), IPR004450 (Threonine synthase-like)	GO:0006520 (cellular amino acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01987g01019.1			Unknown protein		
Niben101Scf05811g04005.1	sp|Q39950|NLTP_HELAN	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf05311g00005.1	sp|Q3ZBQ4|SNR25_BOVIN	***-	U11/U12 small nuclear ribonucleoprotein 25 kDa protein	IPR029071 (Ubiquitin-related domain)	
Niben101Scf03104g02012.1	sp|Q9D9Q0|LRC69_MOUSE	*-*-	Leucine-rich repeat-containing protein 69	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR016024 (Armadillo-type fold), IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf01587g02020.1	sp|A6QSQ0|FAL1_AJECN	****	ATP-dependent RNA helicase FAL1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf00109g10029.1	ref|XP_002509497.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF50884.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04113g07014.1	sp|E1U332|ALL12_OLEEU	***-	Isoflavone reductase-like protein	IPR016040 (NAD(P)-binding domain)	
Niben101Scf11611g00002.1	ref|NP_001233978.1|	*-*-	extensin-like protein Dif54 precursor [Solanum lycopersicum] emb|CAA67814.1| extensin-like protein Dif54 [Solanum lycopersicum]		
Niben101Scf35301g00004.1	sp|Q3YMR2|NLTP2_SOLCI	****	Non-specific lipid-transfer protein 2	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf08672g02003.1	sp|Q39204|MYC2_ARATH	***-	Transcription factor MYC2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf01716g00009.1	AT2G29650.1	***-	phosphate transporter 4;1 LENGTH=512	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf22376g00002.1	gb|KEH17374.1|	****	calmodulin-binding protein [Medicago truncatula]	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf03147g07002.1	sp|Q8BHL8|PSMF1_MOUSE	--*-	Proteasome inhibitor PI31 subunit	IPR021625 (Fbxo7/PI31 domain)	
Niben101Scf04995g01002.1	emb|CAE01801.2|	***-	product [Oryza sativa Japonica Group]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf08351g05006.1	sp|Q1RJJ1|NUOE_RICBR	****	NADH-quinone oxidoreductase subunit E	IPR002023 (NADH-quinone oxidoreductase subunit E-like), IPR012336 (Thioredoxin-like fold)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02207g01011.1	ref|WP_016706512.1|	*-*-	spermidine synthase [Pseudoalteromonas haloplanktis]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00611g01010.1	sp|Q8GZ92|BRXL4_ARATH	***-	Protein Brevis radix-like 4	IPR013591 (Brevis radix (BRX) domain), IPR027988 (Transcription factor  BREVIS RADIX, N-terminal domain)	
Niben101Scf14268g00001.1	sp|A7TEF4|FAL1_VANPO	*-**	ATP-dependent RNA helicase FAL1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf10224g00005.1	sp|Q9W6S3|SIN1_CHICK	--*-	Target of rapamycin complex 2 subunit MAPKAP1		
Niben101Scf03932g08006.1			Unknown protein		
Niben101Scf03068g00007.1	AT4G32820.2	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=1872		
Niben101Scf00862g02042.1	emb|CDY31483.1|	--*-	BnaC05g15920D [Brassica napus]		
Niben101Scf02836g00005.1	sp|O15245|S22A1_HUMAN	***-	Solute carrier family 22 member 1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf06050g03001.1	sp|Q0WSH6|PP312_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07680g01004.1			Unknown protein		
Niben101Scf00005g00003.1	sp|Q8LC79|GAT18_ARATH	****	GATA transcription factor 18	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00057g00032.1	AT1G76040.2	****	calcium-dependent protein kinase 29 LENGTH=561	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09535g00001.1			Unknown protein	IPR013177 (Domain of unknown function DUF1713, mitochondria)	
Niben101Scf06996g01008.1	sp|Q895K2|DPO3_CLOTE	*-*-	DNA polymerase III PolC-type	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf11550g00001.1			Unknown protein		
Niben101Scf06902g02019.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02029g01001.1	sp|Q7ZZN9|CRVP_PROJR	***-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	
Niben101Scf02812g00002.1	sp|Q80TE7|LRRC7_MOUSE	*-*-	Leucine-rich repeat-containing protein 7	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf06172g04003.1	sp|P50258|TBAD_PHYPO	*-*-	Tubulin alpha-1A chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf07695g01027.1	sp|Q54UB0|TM208_DICDI	***-	Transmembrane protein 208 homolog	IPR008506 (Protein of unknown function DUF788, TMEM208)	
Niben101Scf17244g00008.1	AT1G48320.1	***-	Thioesterase superfamily protein LENGTH=156	IPR029069 (HotDog domain)	
Niben101Scf01013g00010.1	AT3G54700.1	****	phosphate transporter 1;7 LENGTH=535	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005315 (inorganic phosphate transmembrane transporter activity), GO:0006817 (phosphate ion transport), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01061g08028.1	sp|Q9C5Q8|HEN1_ARATH	****	Small RNA 2'-O-methyltransferase	IPR026610 (3'-RNA ribose 2'-O-methyltransferase, Hen1), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0001510 (RNA methylation), GO:0008171 (O-methyltransferase activity), GO:0008173 (RNA methyltransferase activity)
Niben101Scf00819g08009.1	AT3G56200.1	***-	Transmembrane amino acid transporter family protein LENGTH=435	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf07486g01008.1	AT3G17611.1	*-*-	RHOMBOID-like protein 14 LENGTH=334	IPR022764 (Peptidase S54, rhomboid domain)	GO:0004252 (serine-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf00381g03005.1	gb|ABD28710.1|	***-	Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain), IPR026960 (Reverse transcriptase zinc-binding domain)	GO:0003676 (nucleic acid binding)
Niben101Scf02806g00029.1	sp|Q54VZ8|EXOC8_DICDI	*-*-	Exocyst complex component 8	IPR016159 (Cullin repeat-like-containing domain)	
Niben101Scf09087g01024.1	ref|NP_001044712.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf02627g01017.1			Unknown protein		
Niben101Scf05298g06002.1	sp|P42791|RL182_ARATH	***-	60S ribosomal protein L18-2	IPR000039 (Ribosomal protein L18e), IPR021131 (Ribosomal protein L18e/L15P)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03526g01018.1			Unknown protein		
Niben101Scf04049g00022.1	sp|P46032|PTR2_ARATH	***-	Protein NRT1/ PTR FAMILY 8.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02422g02013.1	AT2G14540.1	***-	serpin 2 LENGTH=407	IPR000215 (Serpin family), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf01832g00006.1	sp|Q7KKH3|SDA1_DROME	***-	Protein SDA1 homolog	IPR007949 (SDA1 domain), IPR016024 (Armadillo-type fold), IPR027312 (Sda1)	GO:0000055 (ribosomal large subunit export from nucleus), GO:0005488 (binding), GO:0030036 (actin cytoskeleton organization), GO:0042273 (ribosomal large subunit biogenesis)
Niben101Scf06685g00021.1	sp|O48916|FAH1_ARATH	****	Fatty acid 2-hydroxylase 1	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09817g01010.1	sp|Q8RWU5|FBL3_ARATH	***-	F-box/LRR-repeat protein 3	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf02408g01007.1	AT5G05690.1	***-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03817g05001.1	ref|XP_007017926.1|	--*-	ACT-like protein tyr isoform 1 [Theobroma cacao]		
Niben101Scf03215g00003.1	AT2G32380.1	***-	Transmembrane protein 97, predicted LENGTH=168	IPR016964 (Transmembrane protein 6/97)	
Niben101Scf00173g04001.1	AT3G56680.1	****	Single-stranded nucleic acid binding R3H protein LENGTH=353	IPR001374 (Single-stranded nucleic acid binding R3H), IPR024771 (SUZ domain)	GO:0003676 (nucleic acid binding)
Niben101Scf00448g14001.1	sp|Q5ACX1|RAD5_CANAL	*-**	DNA repair protein RAD5	IPR000330 (SNF2-related), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf01917g09008.1	AT1G50310.1	****	sugar transporter 9 LENGTH=517	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf08873g01015.1	sp|P49637|R27A3_ARATH	***-	60S ribosomal protein L27a-3	IPR021131 (Ribosomal protein L18e/L15P)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03817g03037.1			Unknown protein		
Niben101Scf01789g03002.1	sp|Q9WTV1|CH3L1_RAT	****	Chitinase-3-like protein 1	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004568 (chitinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process)
Niben101Ctg12788g00003.1	gb|KEH30664.1|	*-*-	exostosin family protein [Medicago truncatula]	IPR004263 (Exostosin-like)	
Niben101Ctg14421g00002.1	sp|Q9M886|LBD41_ARATH	***-	LOB domain-containing protein 41	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf11443g01001.1	gb|AAM60860.1|	*-*-	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative [Arabidopsis thaliana]	IPR006287 (DJ-1), IPR029062 (Class I glutamine amidotransferase-like)	
Niben101Scf05605g00054.1			Unknown protein		
Niben101Scf10333g00026.1	gb|AFC90614.1|	*-**	nucleotide-binding site leucine-rich repeat protein, partial [Rhododendron formosanum]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00573g05012.1	sp|Q8DLP3|ATPA_THEEB	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR009741 (Protein of unknown function DUF1313), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf04574g05016.1	AT5G65500.1	*-*-	U-box domain-containing protein kinase family protein LENGTH=791		
Niben101Scf09825g00015.1	AT4G30993.2	***-	Calcineurin-like metallo-phosphoesterase superfamily protein LENGTH=285	IPR029052 (Metallo-dependent phosphatase-like)	
Niben101Scf03164g05001.1	sp|Q9SZD1|TCX5_ARATH	***-	Protein tesmin/TSO1-like CXC 5	IPR005172 (CRC domain), IPR028307 (Lin-54 family)	
Niben101Scf01487g02002.1	AT1G64030.1	***-	serpin 3 LENGTH=385	IPR000215 (Serpin family), IPR023795 (Serpin, conserved site), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf04500g03011.1	AT5G08250.1	*-*-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04099g02011.1	emb|CCA25546.1|	*-*-	phosphatidylinositol kinase putative [Albugo laibachii Nc14]	IPR000270 (Phox/Bem1p), IPR000433 (Zinc finger, ZZ-type), IPR009060 (UBA-like), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04182g05008.1	sp|Q13367|AP3B2_HUMAN	*-**	AP-3 complex subunit beta-2	IPR002553 (Clathrin/coatomer adaptor, adaptin-like, N-terminal), IPR016024 (Armadillo-type fold), IPR026739 (AP complex subunit beta)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030123 (AP-3 adaptor complex)
Niben101Scf04478g01008.1			Unknown protein		
Niben101Scf20768g00027.1	gb|KEH35417.1|	*-*-	organic solute transporter ostalpha protein [Medicago truncatula]	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184)	
Niben101Scf03240g01007.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf05993g01019.1			Unknown protein		
Niben101Scf03937g02034.1	ref|NP_001059263.1|	*-*-	product [Oryza sativa Japonica Group]	IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf01577g01018.1	emb|CDY11634.1|	*-*-	BnaC06g31050D [Brassica napus]		
Niben101Scf02792g03006.1			Unknown protein		
Niben101Scf17179g00001.1	sp|Q8RWS6|FRO6_ARATH	*-**	Ferric reduction oxidase 6	IPR000778 (Cytochrome b245, heavy chain), IPR013130 (Ferric reductase transmembrane component-like domain)	GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02979g05003.1	ref|XP_003620005.1|	--**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00265g00003.1	sp|O34431|ATCL_BACSU	--*-	Calcium-transporting ATPase	IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	
Niben101Scf05018g00002.1	AT4G19185.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=398	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf07914g01002.1			Unknown protein		
Niben101Scf05929g01013.1	sp|Q03164|KMT2A_HUMAN	*-**	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR007728 (Pre-SET domain), IPR018848 (WIYLD domain), IPR025776 (Histone-lysine N-methyltransferase SUVR1/2/4)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation)
Niben101Scf00127g01006.1	gb|KEH20531.1|	***-	transcription factor [Medicago truncatula]		
Niben101Scf13982g00002.1	sp|Q9LSL9|PP445_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf11756g01023.1	sp|Q9VAT2|DCA10_DROME	--*-	DDB1- and CUL4-associated factor 10 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf08326g00016.1	gb|KEH21265.1|	***-	DUF2439 family protein [Medicago truncatula]	IPR018838 (Domain of unknown function DUF2439)	
Niben101Scf01773g03003.1	sp|O93277|WDR1_CHICK	--*-	WD repeat-containing protein 1	IPR011041 (Soluble quinoprotein glucose/sorbosone dehydrogenase), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0003824 (catalytic activity), GO:0005515 (protein binding)
Niben101Scf21409g00006.1	sp|Q1PEZ8|FB117_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR005174 (Protein of unknown function DUF295)	GO:0005515 (protein binding)
Niben101Scf01430g05003.1	sp|Q7M1E7|PGLR2_CHAOB	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02325g03019.1	sp|Q9M9V8|CDPKA_ARATH	*-**	Calcium-dependent protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00595g08042.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07926g01008.1	ref|XP_003609239.1|	*-**	E3 ubiquitin-protein ligase MARCH3 [Medicago truncatula] gb|AES91436.1| zinc finger protein [Medicago truncatula]	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf01383g01003.1	sp|O49884|RL30_LUPLU	***-	60S ribosomal protein L30	IPR000231 (Ribosomal protein L30e), IPR022991 (Ribosomal protein L30e, conserved site), IPR029064 (50S ribosomal protein L30e-like)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07103g02001.1	sp|Q94CL9|KRP7_ARATH	*-**	Cyclin-dependent kinase inhibitor 7	IPR003175 (Cyclin-dependent kinase inhibitor)	GO:0004861 (cyclin-dependent protein serine/threonine kinase inhibitor activity), GO:0005634 (nucleus), GO:0007050 (cell cycle arrest)
Niben101Scf19173g00005.1	sp|O81767|PP348_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02632g06007.1	AT1G69030.1	***-	BSD domain-containing protein LENGTH=317	IPR005607 (BSD)	
Niben101Scf01922g10020.1	AT3G47520.1	****	malate dehydrogenase LENGTH=403	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf00294g02013.1	AT5G03040.1	*-*-	IQ-domain 2 LENGTH=461	IPR025064 (Domain of unknown function DUF4005)	
Niben101Scf01147g05008.1	ref|XP_002516005.1|	--*-	transcription factor, putative [Ricinus communis] gb|EEF46425.1| transcription factor, putative [Ricinus communis]		
Niben101Scf06151g02007.1	emb|CDY27722.1|	***-	BnaA05g31310D [Brassica napus]		
Niben101Scf06836g01009.1	emb|CDX97982.1|	--*-	BnaA06g07330D [Brassica napus]		
Niben101Scf02372g00005.1	sp|Q5HZP1|RNH2B_XENLA	*-*-	Ribonuclease H2 subunit B	IPR019024 (Ribonuclease H2, subunit B)	GO:0005634 (nucleus)
Niben101Scf08091g00023.1	sp|P33083|AX6B_SOYBN	***-	Auxin-induced protein 6B	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03206g04005.1	ref|NP_001050797.1|	*-*-	product [Oryza sativa Japonica Group]	IPR019358 (Transmembrane protein 194)	
Niben101Scf07391g03011.1	AT4G23060.1	***-	IQ-domain 22 LENGTH=484	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf05095g01004.1	sp|P92792|TOM20_SOLTU	***-	Mitochondrial import receptor subunit TOM20	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08942g00014.1	sp|Q9CAM8|PP100_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02786g03004.1	ref|XP_002511983.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF50652.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03634g06015.1	sp|Q9LHA4|VA0D2_ARATH	****	V-type proton ATPase subunit d2	IPR002843 (ATPase, V0 complex,  c/d subunit)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf03027g01003.1	sp|Q94G86|ALL9_OLEEU	*-*-	Glucan endo-1,3-beta-D-glucosidase	IPR012946 (X8 domain)	
Niben101Scf05998g03014.1			Unknown protein		
Niben101Scf02467g00009.1	gb|AFW77109.1|	***-	alkaline alpha galactosidase 2 [Zea mays]	IPR008811 (Glycosyl hydrolases 36), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf18660g00010.1	gb|AFX66971.1|	****	3-beta-hydroxy-delta5-steroid dehydrogenase [Solanum tuberosum]	IPR016040 (NAD(P)-binding domain), IPR028110 (Protein of unknown function DUF4499)	GO:0003854 (3-beta-hydroxy-delta5-steroid dehydrogenase activity), GO:0006694 (steroid biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00344g03006.1	ref|XP_007015661.1|	*-*-	Chaperone DnaJ-domain superfamily protein [Theobroma cacao] gb|EOY33280.1| Chaperone DnaJ-domain superfamily protein [Theobroma cacao]		
Niben101Scf02074g00053.1	AT2G07695.1	*-*-	Cytochrome C oxidase subunit II-like, transmembrane domain LENGTH=291		
Niben101Scf00962g02003.1			Unknown protein		
Niben101Scf00935g00012.1	sp|Q9ZSY2|DNJ15_ARATH	***-	Chaperone protein dnaJ 15		
Niben101Scf04943g01014.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10707g00018.1			Unknown protein		
Niben101Scf03005g02002.1	ref|NP_001049384.1|	***-	OsJ_09921 [Oryza sativa Japonica Group]		
Niben101Scf10142g00009.1	ref|WP_024650074.1|	***-	FAD-dependent oxidoreductase [Pseudomonas syringae]		
Niben101Scf01521g16018.1	ref|WP_025946871.1|	***-	MULTISPECIES: ribonuclease P [Prochlorococcus]	IPR005182 (Domain of unknown function DUF304)	
Niben101Scf00735g02010.1	sp|B4II68|PURA_DROSE	****	Adenylosuccinate synthetase	IPR001114 (Adenylosuccinate synthetase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004019 (adenylosuccinate synthase activity), GO:0005525 (GTP binding), GO:0006164 (purine nucleotide biosynthetic process)
Niben101Scf03479g04014.1	AT3G07210.1	*-*-	unknown protein; Has 97 Blast hits to 85 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa - 7; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). LENGTH=547		
Niben101Scf05314g00003.1	emb|CDX81363.1|	*-*-	BnaC09g07740D [Brassica napus]		
Niben101Scf02794g01001.1	sp|Q9LJB7|BBX32_ARATH	*-**	B-box zinc finger protein 32	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf02407g13010.1	sp|P22128|RAB8_DIPOM	***-	Ras-related protein Rab-8	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf03097g02003.1	sp|Q9CZU3|SK2L2_MOUSE	*-*-	Superkiller viralicidic activity 2-like 2		
Niben101Scf02319g03005.1	sp|Q7PCJ8|SAT2_BOVIN	****	Diamine acetyltransferase 2	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf22564g00003.1	sp|Q9LVQ5|PP432_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01940g00009.1	sp|Q9UXR9|DNAJ_METTE	***-	Chaperone protein DnaJ	IPR012724 (Chaperone DnaJ)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0009408 (response to heat), GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf01158g01005.1	sp|Q0WPW4|ACCO5_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase 5	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf10148g00010.1	sp|Q8BFQ9|KLH42_MOUSE	*-*-	Kelch-like protein 42	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf03778g01006.1	AT1G55190.1	***-	PRA1 (Prenylated rab acceptor) family protein LENGTH=189	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf03253g00019.1	AT5G46330.1	***-	Leucine-rich receptor-like protein kinase family protein LENGTH=1173	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf00712g02010.1	sp|P25802|CYSP1_OSTOS	****	Cathepsin B-like cysteine proteinase 1	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf02325g01006.1	sp|O22714|PPR86_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf13762g02017.1	emb|CDX89288.1|	***-	BnaA01g16050D [Brassica napus]	IPR025852 (Ataxin 2, SM domain)	
Niben101Scf01696g05014.1	sp|Q9NQP4|PFD4_HUMAN	****	Prefoldin subunit 4	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex), GO:0051082 (unfolded protein binding)
Niben101Scf08690g01010.1	sp|Q93ZR6|WSD1_ARATH	*-**	O-acyltransferase WSD1	IPR004255 (O-acyltransferase, WSD1, N-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity), GO:0045017 (glycerolipid biosynthetic process)
Niben101Scf09987g00009.1	AT3G06190.1	***-	BTB-POZ and MATH domain 2 LENGTH=406	IPR008974 (TRAF-like), IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf03628g08001.1	sp|Q94K00|TBL28_ARATH	***-	Protein trichome birefringence-like 28	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf05633g00012.1	sp|Q84WU6|ARFQ_ARATH	****	Auxin response factor 17	IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone)
Niben101Scf00905g06006.1	AT4G31590.1	***-	Cellulose-synthase-like C5 LENGTH=692	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf07491g00006.1	AT2G17040.1	***-	NAC domain containing protein 36 LENGTH=276	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02334g00007.1			Unknown protein		
Niben101Scf05286g00002.1	sp|P10538|AMYB_SOYBN	****	Beta-amylase	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf04110g00005.1			Unknown protein		
Niben101Scf03326g04012.1	ref|XP_007029644.1|	***-	Plasma membrane isoform 4 [Theobroma cacao] gb|EOY10146.1| Plasma membrane isoform 4 [Theobroma cacao]	IPR011528 (Nuclease-related domain, NERD)	
Niben101Scf04728g00009.1	ref|XP_002514524.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF47630.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04653g09001.1	sp|C7LYP4|ARC_ACIFD	*-*-	Proteasome-associated ATPase	IPR001270 (ClpA/B family), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00163g23018.1	sp|B0S230|PFKA_FINM2	*-**	ATP-dependent 6-phosphofructokinase	IPR000023 (Phosphofructokinase domain), IPR012004 (Pyrophosphate-dependent phosphofructokinase TP0108), IPR022953 (Phosphofructokinase)	GO:0003872 (6-phosphofructokinase activity), GO:0005524 (ATP binding), GO:0006002 (fructose 6-phosphate metabolic process), GO:0006096 (glycolytic process)
Niben101Scf05932g04007.1	sp|Q9FZ27|GL22_ARATH	***-	Germin-like protein subfamily 2 member 2	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf01018g04014.1	AT3G24880.1	****	Helicase/SANT-associated, DNA binding protein LENGTH=1957	IPR009057 (Homeodomain-like), IPR014012 (Helicase/SANT-associated, DNA binding)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03338g01004.1	sp|Q96300|14337_ARATH	*-*-	14-3-3-like protein GF14 nu	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf02469g00012.1	AT2G30570.1	****	photosystem II reaction center W LENGTH=133	IPR009806 (Photosystem II PsbW, class 2)	GO:0009507 (chloroplast), GO:0009523 (photosystem II), GO:0015979 (photosynthesis)
Niben101Scf01616g01007.1	sp|Q04716|RT03_PETHY	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf07939g00005.1	sp|A6MVV9|CEMA_RHDSA	****	Chloroplast envelope membrane protein	IPR004282 (Chloroplast envelope membrane protein, CemA)	GO:0016021 (integral component of membrane)
Niben101Scf01779g04011.1	emb|CDY46149.1|	***-	BnaA04g14370D [Brassica napus]		
Niben101Scf04124g02002.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf12205g00011.1	sp|Q40704|MADS3_ORYSJ	****	MADS-box transcription factor 3	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf00005g01012.1	sp|Q5BLD8|MT21A_DANRE	*-*-	Protein N-lysine methyltransferase METTL21A	IPR019410 (Nicotinamide N-methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf05957g00008.1	ref|YP_002608396.1|	***-	orf86 [Vitis vinifera] emb|CAQ77655.1| orf86 [Vitis vinifera] gb|ACS15212.1| ORF86 [Vitis vinifera]		
Niben101Scf04388g02019.1	gb|ACF59712.1|	***-	anthocyanidin synthase [Ipomoea trifida]	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf08572g00005.1	AT5G51830.1	****	pfkB-like carbohydrate kinase family protein LENGTH=343	IPR002139 (Ribokinase), IPR029056 (Ribokinase-like)	GO:0004747 (ribokinase activity), GO:0006014 (D-ribose metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf07741g01026.1	AT1G17745.2	****	D-3-phosphoglycerate dehydrogenase LENGTH=651	IPR006236 (D-3-phosphoglycerate dehydrogenase), IPR015878 (S-adenosyl-L-homocysteine hydrolase, NAD binding domain), IPR016040 (NAD(P)-binding domain), IPR029009 (Allosteric substrate binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1), IPR029753 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site)	GO:0004617 (phosphoglycerate dehydrogenase activity), GO:0006564 (L-serine biosynthetic process), GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01274g04010.1	ref|NP_001047691.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf05173g04004.1	AT1G02100.3	****	Leucine carboxyl methyltransferase LENGTH=332	IPR007213 (Leucine carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf00133g06001.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04096g03009.1	sp|Q9XFM6|MSBP1_ARATH	****	Membrane steroid-binding protein 1	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf10122g01003.1	sp|O76003|GLRX3_HUMAN	*-*-	Glutaredoxin-3	IPR004480 (Monothiol glutaredoxin-related), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf06164g01006.1	sp|Q40161|GP1_SOLLC	***-	Polygalacturonase-1 non-catalytic subunit beta		
Niben101Scf02792g00006.1	sp|Q9HDW7|ATC2_SCHPO	*-*-	Calcium-transporting ATPase 2	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf10767g03024.1	gb|ABI34369.1|	*-*-	Late blight resistance protein, putative [Solanum demissum]		
Niben101Scf08478g02009.1	sp|P31927|SPSA_MAIZE	****	Sucrose-phosphate synthase	IPR012819 (Sucrose phosphate synthase, plant), IPR028098 (Glycosyltransferase subfamily 4, N-terminal domain)	GO:0005985 (sucrose metabolic process), GO:0009058 (biosynthetic process), GO:0046524 (sucrose-phosphate synthase activity)
Niben101Scf01440g02012.1	sp|Q6DDZ9|TLDC1_XENLA	***-	TLD domain-containing protein 1	IPR006571 (TLDc domain), IPR011992 (EF-hand domain pair)	
Niben101Scf08653g02007.1	AT3G18200.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=360	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf02309g03016.1	ref|YP_009091709.1|	*-*-	orf109 (mitochondrion) [Panax ginseng] gb|AHJ81034.1| orf109 (mitochondrion) [Panax ginseng]		
Niben101Scf04778g02013.1	sp|Q9SD82|RFA1B_ARATH	--*-	Replication protein A 70 kDa DNA-binding subunit B	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf00398g06016.1	sp|O35841|API5_MOUSE	***-	Apoptosis inhibitor 5	IPR008383 (Apoptosis inhibitory 5)	GO:0005488 (binding)
Niben101Scf03329g02006.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00890g01004.1			Unknown protein		
Niben101Scf07465g00006.1	gb|ABU50826.1|	*-*-	GAGA-binding transcriptional activator [Arabidopsis arenosa]	IPR010409 (GAGA-binding transcriptional activator)	
Niben101Scf01774g10022.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03484g03002.1	ref|NP_001053826.1|	--*-	[Oryza sativa Japonica Group] dbj|BAF15740.1| Os04g0610000, partial [Oryza sativa Japonica Group]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf19949g00007.1	emb|CDX80520.1|	***-	BnaC07g29240D [Brassica napus]		
Niben101Scf04477g01001.1	sp|Q9H6D7|HAUS4_HUMAN	--**	HAUS augmin-like complex subunit 4	IPR029327 (HAUS augmin-like complex subunit 4)	GO:0051225 (spindle assembly), GO:0070652 (HAUS complex)
Niben101Scf01552g05013.1	sp|Q6YW46|EF1G2_ORYSJ	****	Elongation factor 1-gamma 2	IPR001662 (Translation elongation factor EF1B, gamma chain, conserved), IPR008974 (TRAF-like), IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0003746 (translation elongation factor activity), GO:0005515 (protein binding), GO:0006414 (translational elongation)
Niben101Scf07638g03006.1			Unknown protein		
Niben101Scf06825g02038.1	dbj|BAD90706.1|	*-*-	plastid DNA-binding protein [Brassica napus]		
Niben101Scf01594g07002.1	emb|CEF97928.1|	*-**	Nucleotide-binding, alpha-beta plait [Ostreococcus tauri]	IPR007201 (RNA recognition motif 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf01592g01001.1	sp|P50250|SAHH_PLAF7	****	Adenosylhomocysteinase	IPR000043 (Adenosylhomocysteinase), IPR016040 (NAD(P)-binding domain)	GO:0004013 (adenosylhomocysteinase activity), GO:0006730 (one-carbon metabolic process)
Niben101Scf01582g13007.1			Unknown protein		
Niben101Scf06964g00007.1	sp|Q7YJX7|PSBD_CALFG	****	Photosystem II D2 protein	IPR000484 (Photosynthetic reaction centre, L/M), IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009523 (photosystem II), GO:0009767 (photosynthetic electron transport chain), GO:0009772 (photosynthetic electron transport in photosystem II), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf08624g00006.1	sp|Q69ZM6|STK36_MOUSE	*-**	Serine/threonine-protein kinase 36	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07671g00005.1	sp|Q42560|ACO1_ARATH	*-*-	Aconitate hydratase 1	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf12293g02028.1	dbj|BAO49723.1|	****	nuclear pore complex protein Nup188b [Nicotiana benthamiana]	IPR021827 (Nucleoporin Nup186/Nup192/Nup205)	GO:0005643 (nuclear pore)
Niben101Scf15120g01013.1	AT5G50330.1	***-	Protein kinase superfamily protein LENGTH=479	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf17644g00001.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf04918g03007.1	sp|A5CWW1|MURG_VESOH	****	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	IPR007235 (Glycosyl transferase, family 28, C-terminal), IPR009695 (Diacylglycerol glucosyltransferase, N-terminal)	GO:0005975 (carbohydrate metabolic process), GO:0009247 (glycolipid biosynthetic process), GO:0016758 (transferase activity, transferring hexosyl groups), GO:0030246 (carbohydrate binding), GO:0030259 (lipid glycosylation)
Niben101Scf03271g02004.1	sp|Q1XDC7|YCF60_PYRYE	***-	Tic20 family protein Ycf60		
Niben101Scf00863g07002.1	sp|Q93Y38|GDT13_ARATH	***-	GDT1-like protein 3	IPR001727 (Uncharacterised protein family UPF0016)	GO:0016020 (membrane)
Niben101Scf11557g03009.1	sp|P82682|TL14_SPIOL	--*-	Thylakoid lumenal 14.7 kDa protein	IPR007621 (TPM domain)	
Niben101Scf12785g00001.1	gb|ABE65766.1|	*-*-	mandelonitrile lyase [Arabidopsis thaliana]		
Niben101Scf01587g00005.1	sp|Q9M9Q9|PER5_ARATH	*-**	Peroxidase 5	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02771g01008.1	sp|Q8N7C7|RN148_HUMAN	*-*-	RING finger protein 148	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00854g00032.1			Unknown protein		
Niben101Scf02502g14004.1	sp|P31212|THD1_SOLTU	*-*-	Threonine dehydratase biosynthetic	IPR001721 (ACT-like domain)	
Niben101Scf10324g01002.1	sp|O81481|IF4E1_MAIZE	****	Eukaryotic translation initiation factor 4E-1	IPR001040 (Translation Initiation factor eIF- 4e), IPR023398 (Translation Initiation factor eIF- 4e-like  domain)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0006413 (translational initiation)
Niben101Scf06009g00029.1	sp|Q8L608|HPSE2_ARATH	***-	Heparanase-like protein 2	IPR005199 (Glycoside hydrolase, family 79)	GO:0005975 (carbohydrate metabolic process), GO:0016020 (membrane), GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf20325g00005.1	AT1G03010.1	***-	Phototropic-responsive NPH3 family protein LENGTH=634	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf06385g01007.1	sp|O81211|RBOHE_ARATH	****	Respiratory burst oxidase homolog protein E	IPR000778 (Cytochrome b245, heavy chain), IPR011992 (EF-hand domain pair), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0004601 (peroxidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0050664 (oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf30710g00001.1	dbj|BAD66730.1|	***-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf01497g03009.1	sp|A1L244|SAC1A_DANRE	*-**	Phosphatidylinositide phosphatase SAC1-A	IPR002013 (SAC domain), IPR030069 (Phosphoinositide phosphatase SAC6/7/8)	GO:0042578 (phosphoric ester hydrolase activity), GO:0052866 (phosphatidylinositol phosphate phosphatase activity)
Niben101Scf00270g17013.1	AT1G74120.1	*-*-	Mitochondrial transcription termination factor family protein LENGTH=445		
Niben101Scf01448g02001.1	tpg|DAA53276.1|	***-	TPA: hypothetical protein ZEAMMB73_330697 [Zea mays]	IPR022542 (Domain of unknown function DUF3730)	
Niben101Scf00690g07002.1	sp|A2YEZ6|SAP8_ORYSI	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	IPR000058 (Zinc finger, AN1-type), IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf07673g03004.1	AT1G56150.1	***-	SAUR-like auxin-responsive protein family LENGTH=110	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03584g06014.1			Unknown protein		
Niben101Scf05629g00007.1	gb|ACF19787.1|	****	NAC transcription factor [Nicotiana tabacum]	IPR003441 (NAC domain), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf16542g00001.1			Unknown protein		
Niben101Scf03404g01011.1	gb|KEZ86104.1|	***-	Holliday junction resolvase [Clostridium sulfidigenes]	IPR005227 (Resolvase, holliday junction-type, YqgF-like), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005737 (cytoplasm), GO:0006139 (nucleobase-containing compound metabolic process), GO:0006281 (DNA repair), GO:0006310 (DNA recombination), GO:0006974 (cellular response to DNA damage stimulus), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00174g00039.1	sp|Q9SXD8|PPR90_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00472g06013.1	sp|Q9U2A9|BOP1_CAEEL	****	Ribosome biogenesis protein BOP1 homolog	IPR012953 (BOP1, N-terminal domain), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR028598 (WD repeat BOP1/Erb1)	GO:0005515 (protein binding), GO:0006364 (rRNA processing), GO:0042254 (ribosome biogenesis)
Niben101Scf13920g00004.1	sp|Q8VYI9|NLTL5_ARATH	***-	Non-specific lipid-transfer protein-like protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf03018g18009.1	sp|Q5FFD8|RPOC_EHRRG	--*-	DNA-directed RNA polymerase subunit beta'		
Niben101Scf04675g09022.1	gb|AES59286.2|	*-*-	PHAX RNA-binding domain protein [Medicago truncatula]		
Niben101Scf08134g00005.1	sp|Q9LT72|PUS4_ARATH	*-*-	RNA pseudouridine synthase 4, mitochondrial		
Niben101Scf06653g01010.1	ref|WP_026805859.1|	-***	MULTISPECIES: ribonuclease HI [Arcobacter]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf17290g01007.1	gb|KEH18169.1|	-**-	Defensin-like protein [Medicago truncatula]	IPR003614 (Knottin, scorpion toxin-like)	GO:0006952 (defense response)
Niben101Scf01696g06036.1	sp|Q3L181|PERR_RAUSE	****	Perakine reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06734g00014.1	AT1G70280.2	***-	NHL domain-containing protein LENGTH=509	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0005515 (protein binding)
Niben101Scf02026g04007.1	AT2G25180.1	*-*-	response regulator 12 LENGTH=596	IPR010402 (CCT domain), IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system), GO:0005515 (protein binding)
Niben101Scf04852g00005.1	sp|Q9SZR0|CHMO_ARATH	***-	Choline monooxygenase, chloroplastic	IPR001663 (Aromatic-ring-hydroxylating dioxygenase, alpha subunit), IPR015879 (Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain)	GO:0005506 (iron ion binding), GO:0006725 (cellular aromatic compound metabolic process), GO:0016491 (oxidoreductase activity), GO:0016708 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor), GO:0019439 (aromatic compound catabolic process), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03371g02002.1	gb|AHF63750.1|	***-	transcription-repair coupling factor [Synechococcus sp. WH 8109]	IPR001650 (Helicase, C-terminal), IPR003711 (CarD-like/TRCF domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf08637g01008.1			Unknown protein		
Niben101Scf04989g01024.1	AT1G53780.2	*-**	peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases LENGTH=620	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029067 (CDC48 domain 2-like)	GO:0005524 (ATP binding)
Niben101Scf08707g00001.1	AT3G06890.1	***-	unknown protein; Has 91 Blast hits to 91 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=128		
Niben101Scf06430g00022.1	gb|ABG66090.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf00584g03029.1	AT3G23530.1	***-	Cyclopropane-fatty-acyl-phospholipid synthase LENGTH=867	IPR002937 (Amine oxidase), IPR003333 (Mycolic acid cyclopropane synthase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008610 (lipid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02386g02002.1	sp|Q3AVV5|NDK_SYNS9	****	Nucleoside diphosphate kinase	IPR001564 (Nucleoside diphosphate kinase)	GO:0004550 (nucleoside diphosphate kinase activity), GO:0005524 (ATP binding), GO:0006165 (nucleoside diphosphate phosphorylation), GO:0006183 (GTP biosynthetic process), GO:0006228 (UTP biosynthetic process), GO:0006241 (CTP biosynthetic process)
Niben101Scf07188g02003.1	gb|KEH37427.1|	--*-	low-molecular-weight cysteine-rich protein [Medicago truncatula]		
Niben101Scf03481g00007.1	sp|P53607|ILVA_BURM1	***-	L-threonine dehydratase biosynthetic IlvA	IPR001721 (ACT-like domain), IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme)	GO:0006520 (cellular amino acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02594g08002.1	sp|Q5ZL42|BZW2_CHICK	*-*-	Basic leucine zipper and W2 domain-containing protein 2	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf23355g00024.1	sp|Q9NW13|RBM28_HUMAN	*-**	RNA-binding protein 28	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05855g04006.1	sp|Q3ZBN5|ASPN_BOVIN	--*-	Asporin		
Niben101Scf06826g06001.1	sp|Q6NKW9|E138_ARATH	***-	Glucan endo-1,3-beta-glucosidase 8	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00482g03005.1	sp|Q71V09|H4_CAPAN	***-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly), GO:0046982 (protein heterodimerization activity)
Niben101Scf02706g00004.1	sp|Q8VY97|Y4213_ARATH	***-	ER membrane protein complex subunit 7 homolog	IPR019008 (Domain of unknown function DUF2012)	
Niben101Scf05108g04016.1	ref|XP_007049403.1|	***-	Cell wall protein AWA1 isoform 1 [Theobroma cacao] gb|EOX93560.1| Cell wall protein AWA1 isoform 1 [Theobroma cacao]	IPR009060 (UBA-like), IPR009719 (Protein of unknown function DUF1296, plant)	GO:0005515 (protein binding)
Niben101Scf06385g01008.1	AT1G19240.1	*-*-	unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=104		
Niben101Scf02581g02004.1			Unknown protein		
Niben101Scf01907g00002.1	AT2G24765.1	***-	ADP-ribosylation factor 3 LENGTH=182	IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf01090g02014.1	sp|Q8SAG3|ADF_VITVI	****	Actin-depolymerizing factor	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf01274g03003.1	AT1G08470.1	****	strictosidine synthase-like 3 LENGTH=390	IPR004141 (Strictosidine synthase)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf03595g06002.1	sp|B2FQR2|CLPP_STRMK	*-*-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00861g07009.1	sp|Q66GR0|FLA17_ARATH	***-	Fasciclin-like arabinogalactan protein 17	IPR000782 (FAS1 domain)	
Niben101Scf02836g01002.1	sp|A6MVV9|CEMA_RHDSA	****	Chloroplast envelope membrane protein	IPR004282 (Chloroplast envelope membrane protein, CemA)	GO:0016021 (integral component of membrane)
Niben101Scf01383g09013.1	emb|CDY49624.1|	*-*-	BnaCnng17760D [Brassica napus]		
Niben101Scf01623g09006.1	ref|WP_002867692.1|	--**	GTP-binding protein [Campylobacter jejuni] gb|EHI15597.1| GTP-binding protein [Campylobacter jejuni subsp. jejuni NW]	IPR006073 (GTP binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf02340g01003.1	AT4G27450.1	***-	Aluminium induced protein with YGL and LRDR motifs LENGTH=250	IPR024286 (Domain of unknown function DUF3700), IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf06565g03007.1	AT3G10870.1	*-*-	methyl esterase 17 LENGTH=276	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02366g03007.1	AT3G50685.1	***-	unknown protein; Has 52 Blast hits to 46 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). LENGTH=158		
Niben101Scf01847g00001.1	AT4G38810.2	*-*-	Calcium-binding EF-hand family protein LENGTH=375		
Niben101Scf00748g00009.1	AT3G11340.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=447	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04785g01014.1	sp|Q3MG81|DNAJ_ANAVT	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf29015g00010.1	sp|Q8CN53|LRGB_STAES	*-*-	Antiholin-like protein LrgB	IPR007300 (CidB/LrgB family)	
Niben101Scf12277g02002.1	AT4G08240.2	***-	unknown protein; Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=136		
Niben101Scf22905g00003.1	ref|XP_002529614.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF32759.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09075g01004.1	sp|P49210|RL9_ORYSJ	*-*-	60S ribosomal protein L9	IPR020040 (Ribosomal protein L6, alpha-beta domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf04665g02022.1	AT5G06839.3	****	bZIP transcription factor family protein LENGTH=460	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02078g05014.1			Unknown protein		
Niben101Scf05811g04006.1			Unknown protein		
Niben101Scf04209g00009.1	sp|P43510|CPR6_CAEEL	--**	Cathepsin B-like cysteine proteinase 6	IPR013128 (Peptidase C1A)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf09151g02001.1			Unknown protein		
Niben101Scf11122g01008.1	sp|Q9FII7|SMC6B_ARATH	***-	Structural maintenance of chromosomes protein 6B	IPR003395 (RecF/RecN/SMC, N-terminal), IPR010935 (SMCs flexible hinge), IPR027132 (Structural maintenance of chromosomes protein 6), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000724 (double-strand break repair via homologous recombination), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0006281 (DNA repair), GO:0030915 (Smc5-Smc6 complex), GO:0051276 (chromosome organization)
Niben101Scf02207g01010.1	sp|Q9FML2|HDA6_ARATH	****	Histone deacetylase 6	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	GO:0004407 (histone deacetylase activity), GO:0016575 (histone deacetylation)
Niben101Scf02401g02014.1	AT5G19010.1	****	mitogen-activated protein kinase 16 LENGTH=567	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03213g03012.1	sp|Q9DC40|TELO2_MOUSE	*-*-	Telomere length regulation protein TEL2 homolog	IPR016024 (Armadillo-type fold), IPR019337 (Telomere length regulation protein, conserved domain)	GO:0005488 (binding)
Niben101Scf02805g06001.1	sp|Q8RYC6|IAA32_ARATH	***-	Auxin-responsive protein IAA32	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf12214g00004.1	AT4G34270.1	***-	TIP41-like family protein LENGTH=290	IPR007303 (TIP41-like protein)	
Niben101Scf05553g04001.1	sp|Q9EQB9|ZN287_MOUSE	--*-	Zinc finger protein 287	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR029789 (Protein TRANSPARENT TESTA 1 like)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01498g08006.1	AT1G72170.1	***-	Domain of unknown function (DUF543) LENGTH=102	IPR007512 (Protein of unknown function DUF543)	
Niben101Scf00234g01015.1	sp|Q54VZ8|EXOC8_DICDI	***-	Exocyst complex component 8	IPR016159 (Cullin repeat-like-containing domain)	
Niben101Scf07267g01004.1	AT3G10970.1	***-	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=365	IPR023214 (HAD-like domain)	
Niben101Scf04820g00007.1	sp|Q5AI86|EIF3I_CANAL	***-	Eukaryotic translation initiation factor 3 subunit I	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01764g03014.1	sp|A7X1N7|RRF_STAA1	--*-	Ribosome-recycling factor	IPR007930 (Protein of unknown function DUF724)	
Niben101Scf03279g02003.1	sp|Q6ICX4|PTBP3_ARATH	****	Polypyrimidine tract-binding protein homolog 3	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02525g07004.1	emb|CDY10086.1|	***-	BnaC08g43650D [Brassica napus]		
Niben101Scf00919g03002.1	AT3G07700.3	***-	Protein kinase superfamily protein LENGTH=724	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00350g03007.1	sp|Q9LVQ0|PME31_ARATH	*-**	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01023g05002.1	gb|KEH17617.1|	*-*-	structural constituent of cell wall protein, putative [Medicago truncatula]	IPR010820 (Protein of unknown function DUF1421)	
Niben101Scf07488g01015.1			Unknown protein		
Niben101Scf00238g11008.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02936g04014.1	AT5G19980.1	*-**	golgi nucleotide sugar transporter 4 LENGTH=341	IPR029663 (GDP-mannose transporter GONST4, plant)	GO:0005794 (Golgi apparatus), GO:0015780 (nucleotide-sugar transport)
Niben101Scf14639g00004.1	emb|CDY69512.1|	***-	BnaAnng30650D [Brassica napus]		
Niben101Scf09955g01008.1	sp|Q42560|ACO1_ARATH	*-*-	Aconitate hydratase 1	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf23735g00004.1	sp|Q9ZVD5|AGO4_ARATH	*-*-	Protein argonaute 4	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Ctg13716g00003.1	sp|P93751|ZFP8_ARATH	***-	Zinc finger protein 8	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf00099g01005.1	gb|EMT03847.1|	*-*-	70 kDa peptidyl-prolyl isomerase [Aegilops tauschii]		
Niben101Scf03431g00009.1	sp|Q9MV47|MATK_CYCPA	--*-	Maturase K		
Niben101Scf06154g02008.1	gb|EKO59585.1|	--*-	PF09835 family protein [Leptospira kirschneri str. H2]		
Niben101Scf02929g05018.1	sp|P01888|B2MG_BOVIN	-**-	Beta-2-microglobulin		
Niben101Scf18696g00001.1	emb|CDY45142.1|	***-	BnaA09g14500D [Brassica napus]	IPR007679 (Protein of unknown function DUF569), IPR008999 (Actin cross-linking)	
Niben101Scf10423g01005.1	ref|XP_007014461.1|	***-	EF-hand domain-containing protein 1, putative [Theobroma cacao] gb|EOY32080.1| EF-hand domain-containing protein 1, putative [Theobroma cacao]		
Niben101Scf02068g04004.1	sp|Q9UHG3|PCYOX_HUMAN	****	Prenylcysteine oxidase 1	IPR010795 (Prenylcysteine lyase)	GO:0016670 (oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor), GO:0030328 (prenylcysteine catabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf02469g00013.1	sp|Q6RZZ9|KIF13_DICDI	*-**	Kinesin-related protein 13	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf01159g00002.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05855g01014.1	sp|Q9D9H8|CB069_MOUSE	***-	UPF0565 protein C2orf69 homolog	IPR018881 (Uncharacterised protein family UPF0565)	
Niben101Scf00792g00005.1	ref|WP_028279532.1|	***-	alpha-1,6-glucosidase [Arthrobacter sp. H5]	IPR011839 (Alpha-1,6-glucosidases, pullulanase-type), IPR013783 (Immunoglobulin-like fold), IPR015902 (Glycoside hydrolase, family 13), IPR017853 (Glycoside hydrolase superfamily), IPR024561 (Alpha-1,6-glucosidases, pullulanase-type, C-terminal)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0043169 (cation binding), GO:0051060 (pullulanase activity)
Niben101Scf04886g04001.1	AT5G02460.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=399	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf15467g02029.1	sp|O48723|PLP2_ARATH	***-	Patatin-like protein 2	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf12797g00005.1	sp|Q9UNI6|DUS12_HUMAN	****	Dual specificity protein phosphatase 12	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf03326g04011.1			Unknown protein		
Niben101Scf09523g02006.1	gb|AFW71223.1|	*-*-	meiosis 5 [Zea mays]		
Niben101Scf03150g06002.1	sp|Q40477|ERF4_TOBAC	*-**	Ethylene-responsive transcription factor 4	IPR015300 (DNA-binding pseudobarrel domain), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00087g02011.1	sp|Q8S9L6|CRK29_ARATH	*-**	Cysteine-rich receptor-like protein kinase 29	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01274g04012.1	AT3G57040.1	***-	response regulator 9 LENGTH=234	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf05057g04014.1	gb|KEH43621.1|	***-	transmembrane protein, putative [Medicago truncatula]	IPR009943 (Protein of unknown function DUF1475)	
Niben101Scf01733g01007.1	sp|Q9LXH0|NRT26_ARATH	*-*-	High affinity nitrate transporter 2.6	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf10122g01005.1	sp|F4KAB8|MCM6_ARATH	****	DNA replication licensing factor MCM6	IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR004039 (Rubredoxin-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027925 (MCM N-terminal domain)	GO:0003677 (DNA binding), GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006270 (DNA replication initiation), GO:0042555 (MCM complex)
Niben101Scf03913g01049.1	sp|P29162|ASOL_TOBAC	*-*-	L-ascorbate oxidase homolog	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04610g02005.1	emb|CDY52064.1|	*-*-	BnaA09g53360D [Brassica napus]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf09792g03019.1	sp|Q05A36|MEX3C_MOUSE	*-**	RNA-binding E3 ubiquitin-protein ligase MEX3C	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01628g04009.1	sp|P42791|RL182_ARATH	***-	60S ribosomal protein L18-2	IPR000039 (Ribosomal protein L18e), IPR021131 (Ribosomal protein L18e/L15P)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf12652g00006.1	gb|ABA98998.1|	--*-	expressed protein [Oryza sativa Japonica Group]	IPR009500 (Protein of unknown function DUF1118)	
Niben101Scf08191g02003.1	sp|P19963|ALL1_OLEEU	***-	Major pollen allergen Ole e 1	IPR006041 (Pollen Ole e 1 allergen/extensin)	GO:0005615 (extracellular space)
Niben101Scf00590g00007.1	sp|Q9C7T4|BH096_ARATH	*-*-	Transcription factor bHLH96	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00616g02014.1	sp|Q9Y225|RNF24_HUMAN	*-*-	RING finger protein 24	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04987g00019.1	sp|O04940|CDS1_SOLTU	****	Phosphatidate cytidylyltransferase	IPR000374 (Phosphatidate cytidylyltransferase)	GO:0004605 (phosphatidate cytidylyltransferase activity), GO:0016020 (membrane), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13429g04018.1	AT4G16510.1	*-**	YbaK/aminoacyl-tRNA synthetase-associated domain LENGTH=232	IPR007214 (YbaK/aminoacyl-tRNA synthetase-associated domain)	GO:0002161 (aminoacyl-tRNA editing activity)
Niben101Scf15435g00011.1	ref|XP_007033814.1|	*-*-	RING/U-box superfamily protein, putative isoform 3 [Theobroma cacao] gb|EOY04740.1| RING/U-box superfamily protein, putative isoform 3 [Theobroma cacao]	IPR003101 (Coactivator CBP, KIX domain)	GO:0003712 (transcription cofactor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01377g01006.1	sp|P49043|VPE_CITSI	***-	Vacuolar-processing enzyme	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00082g07008.1	sp|Q8VY89|APC7_ARATH	*-*-	Anaphase-promoting complex subunit 7	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06933g02041.1	sp|Q1XDM0|ODPA_PYRYE	****	Pyruvate dehydrogenase E1 component subunit alpha	IPR017597 (Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y), IPR029061 (Thiamin diphosphate-binding fold)	GO:0004739 (pyruvate dehydrogenase (acetyl-transferring) activity), GO:0006096 (glycolytic process), GO:0008152 (metabolic process), GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor), GO:0043231 (intracellular membrane-bounded organelle), GO:0055114 (oxidation-reduction process)
Niben101Scf01497g05002.1	gb|ABF93550.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR018960 (Domain of unknown function DUF1990)	
Niben101Scf32851g00020.1	sp|Q6NKX5|POT1B_ARATH	*-*-	Protection of telomeres protein 1b	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0000723 (telomere maintenance), GO:0000784 (nuclear chromosome, telomeric region), GO:0003677 (DNA binding)
Niben101Scf06277g00008.1	sp|Q4P0V4|PPID_USTMA	****	Peptidyl-prolyl cis-trans isomerase D	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR011990 (Tetratricopeptide-like helical domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0005515 (protein binding), GO:0006457 (protein folding)
Niben101Scf14079g00013.1	AT3G54700.1	****	phosphate transporter 1;7 LENGTH=535	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005315 (inorganic phosphate transmembrane transporter activity), GO:0006817 (phosphate ion transport), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03711g01021.1	sp|Q9XEX2|PRX2B_ARATH	***-	Peroxiredoxin-2B	IPR012336 (Thioredoxin-like fold)	GO:0016491 (oxidoreductase activity)
Niben101Scf03302g04002.1	AT5G60710.1	****	Zinc finger (C3HC4-type RING finger) family protein LENGTH=704	IPR002035 (von Willebrand factor, type A), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09987g00007.1	AT3G55580.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=488	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf10092g00009.1	AT2G01870.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=157		
Niben101Scf01546g00011.1			Unknown protein		
Niben101Scf04000g01027.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00662g01005.1	sp|B2TJ40|RS2_CLOBB	*-**	30S ribosomal protein S2	IPR001865 (Ribosomal protein S2), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf14937g00008.1	sp|Q06RD1|PSAA_JASNU	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf02869g07004.1	AT1G03495.1	****	HXXXD-type acyl-transferase family protein LENGTH=465	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00536g00001.1	sp|Q9NQQ7|S35C2_HUMAN	***-	Solute carrier family 35 member C2	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf02044g00008.1	sp|Q9UBN7|HDAC6_HUMAN	*-*-	Histone deacetylase 6	IPR000286 (Histone deacetylase superfamily), IPR001607 (Zinc finger, UBP-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf11116g00005.1			Unknown protein		
Niben101Scf01664g06012.1	gb|AES95190.2|	*-*-	basic leucine zipper transcription factor [Medicago truncatula]		
Niben101Scf03160g01011.1	sp|Q8LGI3|ARC2A_ARATH	****	Actin-related protein 2/3 complex subunit 2A	IPR007188 (Actin-related protein 2/3 complex subunit 2)	GO:0005885 (Arp2/3 protein complex), GO:0015629 (actin cytoskeleton), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf01272g00015.1			Unknown protein		
Niben101Scf11364g00008.1	gb|KEH35238.1|	*-*-	rhodanese/cell cycle control phosphatase superfamily protein [Medicago truncatula]		
Niben101Scf22885g00007.1	sp|Q99LB2|DHRS4_MOUSE	*-*-	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	
Niben101Scf02509g12005.1	sp|Q94C11|SUGP1_ARATH	***-	SURP and G-patch domain-containing protein 1-like protein	IPR000061 (SWAP/Surp), IPR000467 (G-patch domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0006396 (RNA processing)
Niben101Scf05447g00002.1	emb|CDX97259.1|	*-*-	BnaA02g20500D [Brassica napus]		
Niben101Scf18348g01034.1	sp|Q8BYI6|PCAT2_MOUSE	--*-	Lysophosphatidylcholine acyltransferase 2		
Niben101Scf04329g04001.1	AT2G36220.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=263		
Niben101Scf14606g01007.1	sp|Q877P8|EFTU_XYLFT	****	Elongation factor Tu	IPR004541 (Translation elongation factor EFTu/EF1A, bacterial/organelle), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006414 (translational elongation)
Niben101Scf00341g03003.1			Unknown protein		
Niben101Scf06954g02001.1	sp|O75132|ZBED4_HUMAN	--*-	Zinc finger BED domain-containing protein 4	IPR003656 (Zinc finger, BED-type)	GO:0003677 (DNA binding)
Niben101Scf09654g01012.1	sp|Q0H904|XYNC_ASPFU	*-*-	Endo-1,4-beta-xylanase C	IPR001000 (Glycoside hydrolase, family 10), IPR008979 (Galactose-binding domain-like), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf02635g03011.1			Unknown protein		
Niben101Scf01062g03001.1	sp|Q6GPM1|ZFR_XENLA	--**	Zinc finger RNA-binding protein	IPR003604 (Zinc finger, U1-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf00863g01001.1	emb|CDX80240.1|	--*-	BnaC09g35020D [Brassica napus]		
Niben101Scf02585g00004.1	AT3G27670.1	***-	ARM repeat superfamily protein LENGTH=1841	IPR016024 (Armadillo-type fold), IPR022542 (Domain of unknown function DUF3730)	GO:0005488 (binding)
Niben101Scf01426g05012.1	sp|Q38741|SBP1_ANTMA	*-**	Squamosa promoter-binding protein 1	IPR017238 (Squamosa promoter-binding protein)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf10416g00003.1			Unknown protein		
Niben101Scf04655g04031.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf15533g00019.1	gb|KEH31110.1|	*-*-	epoxide hydrolase-like protein [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf10707g00016.1			Unknown protein		
Niben101Scf02798g02009.1			Unknown protein		
Niben101Scf07372g00012.1	sp|P49178|GBB_MAIZE	*-**	Guanine nucleotide-binding protein subunit beta	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf16234g01009.1	sp|Q9LZM4|WAKLQ_ARATH	--*-	Wall-associated receptor kinase-like 20	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf05245g00009.1	sp|Q1LZC5|ANR54_BOVIN	--*-	Ankyrin repeat domain-containing protein 54	IPR011333 (BTB/POZ fold), IPR020683 (Ankyrin repeat-containing domain), IPR021094 (NPR1/NIM1-like, C-terminal), IPR024228 (Domain of unknown function DUF3420)	GO:0005515 (protein binding)
Niben101Scf02515g00010.1	sp|Q5ZLN0|LRC40_CHICK	--*-	Leucine-rich repeat-containing protein 40		
Niben101Scf12083g00001.1	sp|Q54CU7|TPC2L_DICDI	***-	Trafficking protein particle complex subunit 2-like protein	IPR006722 (Sedlin)	GO:0005622 (intracellular), GO:0006810 (transport), GO:0006888 (ER to Golgi vesicle-mediated transport)
Niben101Scf18002g00001.1	sp|Q9SMP0|NFYC1_ARATH	****	Nuclear transcription factor Y subunit C-1	IPR009072 (Histone-fold), IPR027170 (Transcriptional activator NFYC/HAP5 subunit)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005622 (intracellular), GO:0006355 (regulation of transcription, DNA-templated), GO:0016602 (CCAAT-binding factor complex), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf06734g02023.1	sp|P54117|G3P_COLLN	*-*-	Glyceraldehyde-3-phosphate dehydrogenase	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf01001g00006.1	sp|P23433|E13D_TOBAC	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf13118g00002.1			Unknown protein		
Niben101Ctg04800g00002.1	gb|AAU93590.2|	*-*-	Late blight resistance protein, putative [Solanum demissum]		
Niben101Scf01171g05004.1	AT1G04910.1	***-	O-fucosyltransferase family protein LENGTH=519	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf08581g01017.1	AT1G11090.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=324	IPR022742 (Putative lysophospholipase), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02325g01007.1	sp|Q9ZW24|GSTU7_ARATH	***-	Glutathione S-transferase U7	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf03580g01006.1	sp|Q86A67|ALF_DICDI	****	Fructose-bisphosphate aldolase	IPR000741 (Fructose-bisphosphate aldolase, class-I), IPR013785 (Aldolase-type TIM barrel), IPR029768 (Fructose-bisphosphate aldolase class-I active site)	GO:0003824 (catalytic activity), GO:0004332 (fructose-bisphosphate aldolase activity), GO:0006096 (glycolytic process)
Niben101Scf07541g00022.1	sp|P51409|RM05_SOLTU	***-	60S ribosomal protein L5, mitochondrial	IPR022803 (Ribosomal protein L5 domain)	
Niben101Scf00854g10035.1	sp|Q8HQQ8|MATK_PINHA	--*-	Maturase K		
Niben101Scf03206g04003.1	AT5G03230.1	***-	Protein of unknown function, DUF584 LENGTH=166	IPR007608 (Senescence regulator S40)	
Niben101Scf03564g00008.1	sp|Q63ZP1|PHF10_XENLA	--*-	PHD finger protein 10	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00735g02011.1	ref|XP_002513164.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF49155.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05813g08004.1	sp|Q11SV1|GPMA_CYTH3	***-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	IPR001345 (Phosphoglycerate/bisphosphoglycerate mutase, active site), IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf05103g00003.1	emb|CDY36440.1|	***-	BnaC03g67600D [Brassica napus]	IPR024738 (Transcriptional coactivator Hfi1/Transcriptional adapter 1)	GO:0070461 (SAGA-type complex)
Niben101Scf07949g00001.1	sp|Q338N2|C3H62_ORYSJ	*-*-	Zinc finger CCCH domain-containing protein 62		
Niben101Scf01085g07008.1	AT2G30460.1	***-	Nucleotide/sugar transporter family protein LENGTH=353	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf00127g01004.1	sp|O04289|SUT32_ARATH	*-**	Sulfate transporter 3.2	IPR001902 (Sulphate anion transporter)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport), GO:1902358 (sulfate transmembrane transport)
Niben101Scf05998g03013.1	sp|A2RP08|MUTL_LACLM	*-**	DNA mismatch repair protein MutL	IPR002099 (DNA mismatch repair protein family)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding), GO:0032300 (mismatch repair complex)
Niben101Scf00046g00015.1	AT5G40500.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=123		
Niben101Scf00119g03011.1	sp|Q7YQC6|HSP71_CANFA	*-*-	Heat shock 70 kDa protein 1	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain)	
Niben101Scf01194g00009.1	sp|Q9FXT9|PRS7_ORYSJ	*-*-	26S protease regulatory subunit 7	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf39499g00005.1	sp|Q9SJE8|ALMT2_ARATH	****	Aluminum-activated malate transporter 2	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf04783g09001.1	emb|CDY05239.1|	***-	BnaC05g45640D [Brassica napus]		
Niben101Scf03113g02015.1	AT2G36350.1	*-**	Protein kinase superfamily protein LENGTH=949	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf37108g00001.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00935g00011.1	sp|Q9C5S8|CRK5_ARATH	*-**	Cysteine-rich receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02996g08009.1	ref|XP_007048620.1|	--*-	CAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 2 [Theobroma cacao] gb|EOX92777.1| CAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 2 [Theobroma cacao]		
Niben101Scf06207g02015.1	AT5G52030.2	***-	TraB family protein LENGTH=402	IPR002816 (Pheromone shutdown, TraB)	
Niben101Scf00420g09002.1	ref|WP_025891424.1|	*-*-	MULTISPECIES: TenA family transcriptional regulator [Prochlorococcus]	IPR016084 (Haem oxygenase-like, multi-helical), IPR023214 (HAD-like domain)	
Niben101Scf04099g06017.1	AT3G61980.1	***-	serine protease inhibitor, Kazal-type family protein LENGTH=117		
Niben101Scf01343g00014.1			Unknown protein		
Niben101Scf00594g05009.1	sp|F6HDM2|NNRD_VITVI	***-	ATP-dependent (S)-NAD(P)H-hydrate dehydratase	IPR029056 (Ribokinase-like)	
Niben101Scf01182g01020.1	sp|Q9LUJ2|PP249_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02479g02011.1	emb|CDX93338.1|	***-	BnaC04g45580D [Brassica napus]		
Niben101Scf07829g03021.1	sp|Q9LT81|C3H39_ARATH	***-	Zinc finger CCCH domain-containing protein 39	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf05449g02011.1	AT5G56760.1	****	serine acetyltransferase 1;1 LENGTH=312	IPR005881 (Serine O-acetyltransferase)	GO:0005737 (cytoplasm), GO:0006535 (cysteine biosynthetic process from serine), GO:0009001 (serine O-acetyltransferase activity), GO:0016740 (transferase activity)
Niben101Scf04717g03003.1	sp|Q8GW29|LOG7_ARATH	***-	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf08632g00003.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf13411g05037.1	sp|Q05967|PGLR_TOBAC	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06529g06013.1	sp|Q42059|GUN6_ARATH	***-	Endoglucanase 6	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like), IPR019028 (Carbohydrate binding domain CBM49)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf02973g00004.1	emb|CDY38422.1|	***-	BnaA10g17360D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf04574g05014.1	sp|Q6SZ87|NAT11_ARATH	****	Nucleobase-ascorbate transporter 11	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf05822g06017.1	sp|Q23919|PGM1_DICDI	***-	Phosphoglucomutase-1	IPR005841 (Alpha-D-phosphohexomutase superfamily)	GO:0000287 (magnesium ion binding), GO:0005975 (carbohydrate metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf00311g04004.1			Unknown protein		
Niben101Scf04015g01009.1	sp|Q10Q08|RFA1B_ORYSJ	*-*-	Replication protein A 70 kDa DNA-binding subunit B	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf05330g02005.1	sp|Q9ZPR4|MRS25_ARATH	****	Magnesium transporter MRS2-5	IPR026573 (Magnesium transporter MRS2/LPE10)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport)
Niben101Scf02354g13007.1			Unknown protein		
Niben101Ctg15004g00001.1			Unknown protein		
Niben101Scf00854g11100.1			Unknown protein		
Niben101Scf02786g02008.1	sp|Q8LPF0|TAF2_ARATH	***-	Transcription initiation factor TFIID subunit 2	IPR014782 (Peptidase M1, membrane alanine aminopeptidase, N-terminal)	GO:0008237 (metallopeptidase activity), GO:0008270 (zinc ion binding)
Niben101Scf04436g08005.1	sp|Q9LYK9|RS263_ARATH	*-*-	40S ribosomal protein S26-3	IPR000892 (Ribosomal protein S26e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05342g05013.1	ref|XP_007031809.1|	*-*-	F28J7.14 protein, putative isoform 4 [Theobroma cacao] gb|EOY02735.1| F28J7.14 protein, putative isoform 4 [Theobroma cacao]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf02829g08007.1	sp|Q9M1W4|HMT2_ARATH	****	Homocysteine S-methyltransferase 2	IPR003726 (Homocysteine S-methyltransferase)	GO:0008898 (S-adenosylmethionine-homocysteine S-methyltransferase activity)
Niben101Scf02223g06008.1	sp|Q9LS42|CASP_ARATH	***-	Protein CASP	IPR012955 (CASP, C-terminal)	GO:0006891 (intra-Golgi vesicle-mediated transport), GO:0030173 (integral component of Golgi membrane)
Niben101Scf03410g01012.1			Unknown protein		
Niben101Scf04040g08010.1	sp|O82013|HSP21_SOLPE	***-	17.3 kDa class II heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf08447g02008.1	sp|Q08069|RS8_MAIZE	***-	40S ribosomal protein S8	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf20549g00002.1	sp|P30163|ACT2_ONCVO	***-	Actin-2	IPR004000 (Actin family)	
Niben101Scf02899g00011.1			Unknown protein		
Niben101Scf08566g04012.1	sp|Q8W4F0|DAR1_ARATH	***-	Protein DA1-related 1	IPR022087 (Protein DA1 like)	
Niben101Scf03376g04028.1	sp|Q88V96|MNMA_LACPL	--*-	tRNA-specific 2-thiouridylase MnmA	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf05073g02018.1	sp|Q93VH6|GIF3_ARATH	--*-	GRF1-interacting factor 3		
Niben101Scf01587g02021.1	sp|Q9SJ96|RPB6B_ARATH	*-**	DNA-directed RNA polymerases II and V subunit 6B	IPR006110 (RNA polymerase, subunit omega/K/RPB6)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Ctg13319g00001.1	sp|P82094|TMF1_HUMAN	--*-	TATA element modulatory factor	IPR022091 (TATA element modulatory factor 1 TATA binding)	
Niben101Scf06426g00002.1	ref|XP_002536345.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26037.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02537g19008.1	sp|Q9CQN7|RM41_MOUSE	--*-	39S ribosomal protein L41, mitochondrial	IPR019189 (Ribosomal protein L27/L41, mitochondrial)	
Niben101Scf03930g04019.1	ref|XP_007023883.1|	*-*-	Galact isoform 1 [Theobroma cacao]	IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf08871g00013.1	ref|XP_002534524.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF27860.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf30418g00019.1	AT5G13550.1	****	sulfate transporter 4.1 LENGTH=685	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00595g03009.1	emb|CDX91647.1|	***-	BnaC02g15130D [Brassica napus]		
Niben101Scf05880g03034.1	sp|M1BYJ7|ENDB1_SOLTU	****	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04001g03013.1	AT1G27090.1	*-*-	glycine-rich protein LENGTH=420		
Niben101Scf01521g09001.1	pdb|2V0U|A	*-**	Chain A, N- And C-terminal Helices Of Oat Lov2 (404-546) Are Involved In Light-induced Signal Transduction (cryo Dark Structure Of Lov2 (404-546)) Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are Involved In Light-Induced Signal Transduction (Cryo- Trapped Light Structure Of Lov2 (404-546))	IPR000014 (PAS domain)	GO:0004871 (signal transducer activity), GO:0007165 (signal transduction)
Niben101Scf02942g00023.1	AT5G39530.1	***-	Protein of unknown function (DUF1997) LENGTH=239	IPR018971 (Protein of unknown function DUF1997)	
Niben101Scf02725g04001.1	gb|AES86343.2|	*-*-	exocyst complex component 84B [Medicago truncatula]		
Niben101Scf37767g00002.1	sp|D0MGU8|FTSH_RHOM4	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf05711g00001.1	sp|Q5ZIZ2|SMYD5_CHICK	*-*-	SET and MYND domain-containing protein 5	IPR001214 (SET domain)	GO:0005515 (protein binding)
Niben101Scf00265g00002.1	sp|P37278|ATCL_SYNE7	--*-	Calcium-transporting ATPase	IPR008250 (P-type ATPase, A  domain), IPR023299 (P-type ATPase, cytoplasmic domain N)	GO:0000166 (nucleotide binding), GO:0046872 (metal ion binding)
Niben101Scf05018g00001.1	sp|P41129|RL132_BRANA	***-	60S ribosomal protein L13-2	IPR001380 (Ribosomal protein L13e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03937g02033.1	sp|Q8BHI7|ELOV5_MOUSE	***-	Elongation of very long chain fatty acids protein 5	IPR002076 (ELO family)	GO:0016021 (integral component of membrane)
Niben101Scf05755g03009.1	emb|CDX85164.1|	*-*-	BnaC07g07420D [Brassica napus]	IPR003101 (Coactivator CBP, KIX domain)	GO:0003712 (transcription cofactor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06650g05014.1	AT1G08630.1	***-	threonine aldolase 1 LENGTH=358	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0016829 (lyase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03224g11010.1	sp|Q943Q3|HS166_ORYSJ	*-*-	16.6 kDa heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf09760g04003.1	sp|Q9ZPQ3|GEK1_ARATH	****	D-aminoacyl-tRNA deacylase	IPR007508 (D-aminoacyl-tRNA deacylase), IPR013763 (Cyclin-like), IPR013922 (Cyclin PHO80-like)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0016788 (hydrolase activity, acting on ester bonds), GO:0019901 (protein kinase binding), GO:0051499 (D-aminoacyl-tRNA deacylase activity)
Niben101Scf02632g06006.1	ref|XP_002905600.1|	--*-	helitron helicase-like protein [Phytophthora infestans T30-4] gb|EEY68441.1| helitron helicase-like protein [Phytophthora infestans T30-4]		
Niben101Scf03076g00003.1			Unknown protein		
Niben101Scf02085g22009.1	sp|Q8RXQ1|TBL35_ARATH	***-	Protein trichome birefringence-like 35	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf00372g05019.1	sp|Q96Q15|SMG1_HUMAN	*-*-	Serine/threonine-protein kinase SMG1	IPR003152 (PIK-related kinase, FATC)	GO:0005515 (protein binding)
Niben101Scf17422g00015.1	gb|ACE98153.1|	***-	expressed protein [Populus tremula]		
Niben101Scf06172g04004.1	sp|Q9FLE9|PRE1_ARATH	***-	Transcription factor PRE1	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03184g01002.1	ref|NP_194330.1|	****	RNA-binding KH domain-containing protein PEPPER [Arabidopsis thaliana] emb|CAB39665.1| putative nucleic acid binding protein [Arabidopsis thaliana] emb|CAB79455.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAL07137.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAM20510.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAM45112.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AEE85142.1| RNA-binding KH domain-containing protein PEPPER [Arabidopsis thaliana]	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf12783g01008.1	AT3G12210.2	*-*-	DNA binding LENGTH=209		
Niben101Scf04220g02005.1	sp|Q43735|PER27_ARATH	****	Peroxidase 27	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00595g08043.1	sp|P39062|ACSA_BACSU	***-	Acetyl-coenzyme A synthetase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf02372g00004.1	AT1G13530.1	***-	Protein of unknown function (DUF1262) LENGTH=385	IPR010683 (Protein of unknown function DUF1262)	
Niben101Scf08942g00013.1	sp|Q00416|SEN1_YEAST	*-*-	Helicase SEN1	IPR026852 (Helicase Sen1-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03396g01003.1	sp|A9NA82|CH60_COXBR	***-	60 kDa chaperonin	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding), GO:0042026 (protein refolding), GO:0044267 (cellular protein metabolic process)
Niben101Scf04049g00021.1	sp|Q51876|LEP_PHOLA	*-**	Signal peptidase I	IPR000223 (Peptidase S26A, signal peptidase I), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf07391g03012.1	sp|Q39649|2SS_CUCMA	***-	2S albumin	IPR000617 (Napin/ Bra allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0045735 (nutrient reservoir activity)
Niben101Scf07728g01008.1	sp|Q9FRG8|GRF9_ORYSJ	--*-	Growth-regulating factor 9	IPR014977 (WRC)	
Niben101Scf06059g02001.1	sp|Q8W4J9|RPP8_ARATH	*-*-	Disease resistance protein RPP8		
Niben101Scf03004g03026.1	sp|P22249|SYE_GEOSE	****	Glutamate--tRNA ligase	IPR000924 (Glutamyl/glutaminyl-tRNA synthetase)	GO:0000049 (tRNA binding), GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004818 (glutamate-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006424 (glutamyl-tRNA aminoacylation), GO:0016876 (ligase activity, forming aminoacyl-tRNA and related compounds), GO:0043039 (tRNA aminoacylation)
Niben101Scf01075g02005.1	gb|ADK13069.1|	--*-	conserved hypothetical protein 12 [Hevea brasiliensis]		
Niben101Scf00381g03004.1	AT5G56840.1	*-*-	myb-like transcription factor family protein LENGTH=233	IPR009057 (Homeodomain-like), IPR017849 (Alkaline phosphatase-like, alpha/beta/alpha)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf11408g01026.1	ref|NP_001078225.1|	-**-	ECA1 gametogenesis related family protein [Arabidopsis thaliana] gb|AEE77614.1| uncharacterized protein [Arabidopsis thaliana]	IPR008502 (Prolamin-like domain)	
Niben101Scf03471g01007.1			Unknown protein		
Niben101Scf01510g00022.1	sp|B7KUA4|ATPA_METC4	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02408g01008.1	sp|Q9LJK3|LAG12_ARATH	*-*-	LAG1 longevity assurance homolog 2	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf10840g00002.1	gb|AES77604.2|	****	hydrolyzing O-glycosyl compounds hydrolase [Medicago truncatula]	IPR000772 (Ricin B lectin domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00338g02018.1	sp|Q9LVP1|TOP3A_ARATH	*-*-	DNA topoisomerase 3-alpha	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf06091g04018.1	ref|WP_009782089.1|	***-	glycosyltransferase [Lyngbya sp. PCC 8106] gb|EAW39129.1| Glycosyl transferase, family 9 [Lyngbya sp. PCC 8106]		
Niben101Scf03479g04015.1	sp|Q67A25|NCS_THLFG	*-*-	S-norcoclaurine synthase	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf05314g00002.1	AT3G19190.1	*-**	autophagy 2 LENGTH=1839	IPR026849 (Autophagy-related protein 2), IPR026854 (Vacuolar protein sorting-associated protein 13A N-terminal domain)	GO:0006914 (autophagy)
Niben101Scf12320g01018.1	sp|Q9M9R6|PPR43_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03817g05002.1	sp|A1U1Y5|STHA_MARHV	*-**	Soluble pyridine nucleotide transhydrogenase	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04934g02005.1	AT5G06470.1	***-	Glutaredoxin family protein LENGTH=239	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02632g03006.1	sp|P62427|RL7A_NANEQ	*-*-	50S ribosomal protein L7Ae	IPR018492 (Ribosomal protein L7Ae/L8/Nhp2 family), IPR029064 (50S ribosomal protein L30e-like)	GO:0003723 (RNA binding), GO:0005730 (nucleolus)
Niben101Scf13399g00025.1	emb|CDX76016.1|	***-	BnaA04g02800D [Brassica napus]	IPR008889 (VQ)	
Niben101Scf09825g00014.1	sp|Q48GL0|CCMA_PSE14	*-**	Cytochrome c biogenesis ATP-binding export protein CcmA	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf23611g00001.1			Unknown protein		
Niben101Scf06509g04003.1	ref|XP_002515965.1|	***-	Histidine-containing ph , putative [Ricinus communis]	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity)
Niben101Scf05697g02003.1	AT5G43400.1	***-	Uncharacterised conserved protein UCP015417, vWA LENGTH=655	IPR024553 (Domain of unknown function DUF2828)	
Niben101Scf05939g03002.1	sp|Q6GNT2|CL049_XENLA	*-*-	UPF0454 protein C12orf49 homolog	IPR019352 (Uncharacterised protein family UPF0454)	
Niben101Scf39379g00002.1	ref|XP_002892177.1|	*-*-	F21B7.33 [Arabidopsis lyrata subsp. lyrata] gb|EFH68436.1| F21B7.33 [Arabidopsis lyrata subsp. lyrata]		
Niben101Scf04679g00013.1	AT4G32140.1	*-*-	EamA-like transporter family LENGTH=394		
Niben101Scf06413g02012.1	sp|Q8VYM0|ERF93_ARATH	*-**	Ethylene-responsive transcription factor 15	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf12339g01014.1	AT3G43240.1	****	ARID/BRIGHT DNA-binding domain-containing protein LENGTH=747	IPR001606 (ARID DNA-binding domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003677 (DNA binding)
Niben101Scf00484g01006.1	sp|O49044|SODC2_MESCR	****	Superoxide dismutase [Cu-Zn] 2	IPR001424 (Superoxide dismutase, copper/zinc binding domain)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04099g06016.1	ref|XP_003608391.1|	*-*-	Protein EXECUTER [Medicago truncatula]		
Niben101Scf02622g11007.1			Unknown protein		
Niben101Scf03113g02016.1	sp|B0JYZ2|PEX16_XENTR	***-	Peroxisomal membrane protein PEX16	IPR013919 (Peroxisome membrane protein, Pex16)	
Niben101Scf08326g00015.1	sp|P49964|SRP19_ORYSJ	****	Signal recognition particle 19 kDa protein	IPR002778 (Signal recognition particle, SRP19 subunit)	GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0048500 (signal recognition particle)
Niben101Scf06856g00002.1	sp|O23693|MLO4_ARATH	***-	MLO-like protein 4	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf01177g04031.1	sp|Q9LW48|ERF5_NICSY	****	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01577g01019.1	AT1G59940.1	***-	response regulator 3 LENGTH=231	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Ctg14992g00001.1	ref|WP_008308917.1|	--*-	Protein of unknown function (DUF3007) [Leptolyngbya sp. PCC 6406]	IPR021562 (Protein of unknown function DUF3007)	
Niben101Scf02513g02002.1	sp|Q8WXF0|SRS12_HUMAN	*-*-	Serine/arginine-rich splicing factor 12	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01240g06009.1	sp|P55871|IF2B_MALDO	****	Eukaryotic translation initiation factor 2 subunit beta	IPR002735 (Translation initiation factor IF2/IF5)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf00594g07012.1	sp|Q9HDW7|ATC2_SCHPO	--*-	Calcium-transporting ATPase 2	IPR023298 (P-type ATPase,  transmembrane domain)	
Niben101Scf02155g03024.1	sp|Q29RM3|REEP5_BOVIN	*-*-	Receptor expression-enhancing protein 5	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf00806g02001.1	sp|P49598|P2C37_ARATH	****	Protein phosphatase 2C 37	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf07765g01015.1	sp|Q56WM6|ROGFE_ARATH	****	Rop guanine nucleotide exchange factor 14	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf21409g00005.1	sp|P11480|TBAE_PHYPO	***-	Tubulin alpha-2B chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf03179g00007.1	sp|Q0H904|XYNC_ASPFU	*-*-	Endo-1,4-beta-xylanase C	IPR001000 (Glycoside hydrolase, family 10), IPR008979 (Galactose-binding domain-like), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08834g00018.1	AT2G17710.1	***-	unknown protein; Has 39 Blast hits to 39 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=152		
Niben101Scf12954g01001.1	sp|Q41638|XTHA_PHAAN	****	Xyloglucan endotransglucosylase/hydrolase protein A	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf08091g00024.1	sp|P33083|AX6B_SOYBN	-**-	Auxin-induced protein 6B		
Niben101Scf08680g01018.1	sp|Q9MAB9|MUB1_ARATH	***-	Membrane-anchored ubiquitin-fold protein 1	IPR017000 (Membrane-anchored ubiquitin-fold protein, HCG-1), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf02357g07003.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf11552g03001.1	emb|CDX76524.1|	***-	BnaA08g08760D [Brassica napus]	IPR007770 (Protein of unknown function DUF679)	
Niben101Scf07645g05006.1			Unknown protein		
Niben101Scf18667g00003.1	gb|KEH40445.1|	***-	transmembrane protein, putative [Medicago truncatula]	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	
Niben101Scf09977g00006.1	sp|Q9SU94|ANM11_ARATH	*-**	Protein arginine N-methyltransferase 1.1	IPR025799 (Protein arginine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity)
Niben101Scf03634g06014.1	sp|Q943Q3|HS166_ORYSJ	--*-	16.6 kDa heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf12673g01014.1	AT5G11130.1	***-	Exostosin family protein LENGTH=480	IPR004263 (Exostosin-like)	
Niben101Scf08711g01027.1	AT3G61320.1	***-	Bestrophin-like protein LENGTH=410	IPR021134 (Bestrophin/UPF0187), IPR024701 (Uncharacterised conserved protein, UCP016988)	
Niben101Scf04276g01015.1	ref|XP_007031115.1|	*-*-	Polynucleotidyl transferase isoform 5, partial [Theobroma cacao] gb|EOY11617.1| Polynucleotidyl transferase isoform 5, partial [Theobroma cacao]		
Niben101Scf01171g05003.1	sp|Q9D099|ACER3_MOUSE	***-	Alkaline ceramidase 3	IPR008901 (Ceramidase)	GO:0006672 (ceramide metabolic process), GO:0016021 (integral component of membrane), GO:0016811 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides)
Niben101Scf09087g01023.1	ref|XP_007045149.1|	*-*-	Ubiquitin-protein ligase, putative [Theobroma cacao] gb|EOY00981.1| Ubiquitin-protein ligase, putative [Theobroma cacao]		
Niben101Scf03129g03018.1			Unknown protein		
Niben101Scf04943g01013.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01383g05022.1	sp|P00561|AK1H_ECOLI	*-**	Bifunctional aspartokinase/homoserine dehydrogenase 1	IPR016040 (NAD(P)-binding domain), IPR022697 (Homoserine dehydrogenase lacking ACT domain)	GO:0004412 (homoserine dehydrogenase activity), GO:0006520 (cellular amino acid metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf02621g01004.1			Unknown protein		
Niben101Scf00344g03007.1	sp|Q9SY06|FAF1_ARATH	*-*-	Protein FANTASTIC FOUR 1	IPR021410 (The fantastic four family)	
Niben101Scf00173g04002.1	sp|Q2HJH1|DNPEP_BOVIN	****	Aspartyl aminopeptidase	IPR001948 (Peptidase M18), IPR023358 (Peptidase M18, domain 2)	GO:0004177 (aminopeptidase activity), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding)
Niben101Scf34405g00001.1	AT1G49750.1	*-*-	Leucine-rich repeat (LRR) family protein LENGTH=494		
Niben101Scf01797g01008.1	sp|P49211|RL321_ARATH	***-	60S ribosomal protein L32-1	IPR001515 (Ribosomal protein L32e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10330g05018.1	sp|P53632|PAP2_YEAST	*-*-	Poly(A) RNA polymerase protein 2	IPR002934 (Nucleotidyl transferase domain)	GO:0016779 (nucleotidyltransferase activity)
Niben101Scf06437g00010.1	sp|Q940T9|COL4_ARATH	*-**	Zinc finger protein CONSTANS-LIKE 4	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf07987g00001.1	sp|Q0WLC7|Y5053_ARATH	***-	CBS domain-containing protein CBSCBSPB4	IPR000270 (Phox/Bem1p), IPR000644 (CBS domain)	GO:0005515 (protein binding)
Niben101Scf00501g02004.1			Unknown protein		
Niben101Scf00573g05011.1	AT1G07220.1	***-	Arabidopsis thaliana protein of unknown function (DUF821) LENGTH=507	IPR006598 (Lipopolysaccharide-modifying protein)	
Niben101Scf03170g01019.1	sp|Q9FLP6|SUMO2_ARATH	***-	Small ubiquitin-related modifier 2	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf01091g00036.1	sp|Q04903|FNTB_PEA	****	Protein farnesyltransferase subunit beta	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR026872 (Protein farnesyltransferase subunit beta)	GO:0003824 (catalytic activity), GO:0005965 (protein farnesyltransferase complex), GO:0018343 (protein farnesylation), GO:0042127 (regulation of cell proliferation)
Niben101Scf00404g01009.1	AT4G21620.1	*-*-	glycine-rich protein LENGTH=131		
Niben101Scf05173g05002.1	sp|Q94JU3|CSN7_ARATH	***-	COP9 signalosome complex subunit 7		
Niben101Scf04329g04002.1	AT5G03870.1	***-	Glutaredoxin family protein LENGTH=384	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf13762g02018.1	sp|Q6CRF4|DBP4_KLULA	*-**	ATP-dependent RNA helicase DBP4	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR025313 (Domain of unknown function DUF4217), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf00177g10007.1	sp|P02578|ACT1_ACACA	*-*-	Actin-1	IPR004000 (Actin family)	
Niben101Scf03227g04002.1	AT3G45400.1	***-	exostosin family protein LENGTH=475	IPR004263 (Exostosin-like)	
Niben101Scf04019g05010.1	AT1G03010.1	***-	Phototropic-responsive NPH3 family protein LENGTH=634	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf09132g00011.1	sp|Q80Z60|ECE2_MOUSE	--*-	Endothelin-converting enzyme 2		
Niben101Scf01970g07027.1	sp|Q93ZD7|MRS24_ARATH	****	Magnesium transporter MRS2-4	IPR002523 (Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB), IPR026573 (Magnesium transporter MRS2/LPE10)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00712g02011.1	sp|Q9LUE0|TPS19_ARATH	****	Terpenoid synthase 19	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf13540g04024.1	sp|A3DDI1|MIAA_CLOTH	****	tRNA dimethylallyltransferase	IPR018022 (tRNA delta(2)-isopentenylpyrophosphate transferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf06151g03008.1	sp|P46014|P2C70_ARATH	****	Protein phosphatase 2C 70	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR008984 (SMAD/FHA domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0005515 (protein binding), GO:0006470 (protein dephosphorylation)
Niben101Scf02044g00009.1	sp|Q28I80|YLAT2_XENTR	-***	Y+L amino acid transporter 2	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf04706g01011.1	sp|Q5H8A4|PIGG_HUMAN	*-*-	GPI ethanolamine phosphate transferase 2	IPR002591 (Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf07763g02004.1	AT1G72410.2	*-*-	COP1-interacting protein-related LENGTH=1270		
Niben101Scf00869g01012.1	sp|P54802|ANAG_HUMAN	*-*-	Alpha-N-acetylglucosaminidase	IPR007781 (Alpha-N-acetylglucosaminidase), IPR024733 (Alpha-N-acetylglucosaminidase, tim-barrel domain)	
Niben101Scf00905g06007.1			Unknown protein		
Niben101Scf03320g05019.1	sp|C3MEM7|MURB_RHISN	--*-	UDP-N-acetylenolpyruvoylglucosamine reductase		
Niben101Scf13002g03017.1	sp|Q86MW9|SINA_SCHMA	****	E3 ubiquitin-protein ligase sina	IPR004162 (E3 ubiquitin-protein ligase SINA like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf20506g01001.1			Unknown protein		
Niben101Scf17482g00016.1	sp|P40825|SYA_YEAST	--*-	Alanine--tRNA ligase, mitochondrial		
Niben101Scf01696g05015.1	sp|Q8DJ44|TATA_THEEB	***-	Sec-independent protein translocase protein TatA	IPR003369 (Sec-independent protein translocase protein TatA/B/E)	GO:0008565 (protein transporter activity), GO:0015031 (protein transport)
Niben101Scf03817g10004.1	sp|Q5M1T7|DNAJ_STRT1	--*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf02405g05008.1	AT2G36670.1	***-	Eukaryotic aspartyl protease family protein LENGTH=512	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00056g07001.1	sp|Q6L8F9|ZIP6_ORYSJ	****	Zinc transporter 6	IPR003689 (Zinc/iron permease)	GO:0005385 (zinc ion transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport), GO:0071577 (zinc ion transmembrane transport)
Niben101Scf02286g01005.1	sp|Q84SL2|C3H50_ORYSJ	*-*-	Zinc finger CCCH domain-containing protein 50	IPR000571 (Zinc finger, CCCH-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf08936g06015.1	AT3G48710.1	*-*-	DEK domain-containing chromatin associated protein LENGTH=462	IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding)
Niben101Scf03455g06020.1	ref|WP_026733342.1|	***-	epimerase [Fischerella sp. PCC 9605]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf09987g00008.1	sp|F4K2A1|FPGS1_ARATH	****	Folylpolyglutamate synthase	IPR001645 (Folylpolyglutamate synthetase)	GO:0004326 (tetrahydrofolylpolyglutamate synthase activity), GO:0005524 (ATP binding), GO:0009058 (biosynthetic process), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0016874 (ligase activity)
Niben101Scf12293g02029.1	sp|Q8DK65|GATA_THEEB	***-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf04918g03006.1			Unknown protein		
Niben101Scf07509g00002.1	gb|KEH43918.1|	*-*-	RING zinc finger protein, putative [Medicago truncatula]	IPR017907 (Zinc finger, RING-type, conserved site)	
Niben101Scf02360g01011.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR015757 (Calcineurin B protein)	GO:0005509 (calcium ion binding)
Niben101Scf01491g00004.1	sp|Q04789|ILVX_BACSU	****	Acetolactate synthase	IPR012846 (Acetolactate synthase, large subunit, biosynthetic), IPR029035 (DHS-like NAD/FAD-binding domain), IPR029061 (Thiamin diphosphate-binding fold)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0003984 (acetolactate synthase activity), GO:0009082 (branched-chain amino acid biosynthetic process), GO:0030976 (thiamine pyrophosphate binding), GO:0050660 (flavin adenine dinucleotide binding)
Niben101Scf01587g00006.1	sp|Q9M9Q9|PER5_ARATH	****	Peroxidase 5	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00962g00006.1	sp|Q9CXL1|TM50A_MOUSE	-**-	Transmembrane protein 50A	IPR007919 (Uncharacterised protein family UPF0220)	
Niben101Scf02771g01007.1	sp|P17879|HS71B_MOUSE	***-	Heat shock 70 kDa protein 1B	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf16197g01003.1	sp|Q9FZ95|PUP3_ARATH	***-	Purine permease 3	IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf05166g07012.1	sp|Q9FM19|HIR1_ARATH	***-	Hypersensitive-induced response protein 1	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf01671g02024.1	sp|Q8NHU6|TDRD7_HUMAN	--*-	Tudor domain-containing protein 7		
Niben101Scf00163g23017.1	AT5G61580.1	*-*-	phosphofructokinase 4 LENGTH=530		
Niben101Scf02502g11005.1	AT3G53130.1	***-	Cytochrome P450 superfamily protein LENGTH=539	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00276g07001.1	sp|Q02499|KPYK_GEOSE	****	Pyruvate kinase	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf10712g00020.1	sp|Q7SXP4|SRS1A_DANRE	--*-	Serine/arginine-rich splicing factor 1A	IPR001878 (Zinc finger, CCHC-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf08572g00004.1	sp|Q9XJ60|MAD50_ORYSJ	****	MADS-box transcription factor 50	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01634g03018.1	sp|Q1H0I2|RF3_METFK	--*-	Peptide chain release factor 3		
Niben101Scf08531g03030.1	AT1G72170.1	***-	Domain of unknown function (DUF543) LENGTH=102	IPR007512 (Protein of unknown function DUF543)	
Niben101Scf00005g01013.1	sp|Q96JC1|VPS39_HUMAN	***-	Vam6/Vps39-like protein	IPR000547 (Clathrin, heavy chain/VPS, 7-fold repeat), IPR001180 (Citron-like), IPR019452 (Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1), IPR019453 (Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2)	GO:0005083 (small GTPase regulator activity), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport)
Niben101Scf12205g00010.1	AT1G18160.1	*-**	Protein kinase superfamily protein LENGTH=992	IPR011009 (Protein kinase-like domain), IPR016253 (Integrin-linked protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0009966 (regulation of signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf28650g00001.1	AT4G31170.1	*-**	Protein kinase superfamily protein LENGTH=412	IPR002912 (ACT domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09929g02003.1	sp|Q8L706|SYT5_ARATH	***-	Synaptotagmin-5	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00270g17012.1	sp|Q9QY93|DCTP1_MOUSE	***-	dCTP pyrophosphatase 1	IPR004518 (NTP pyrophosphohydrolase MazG, putative catalytic core), IPR009039 (EAR)	
Niben101Scf06364g00003.1	sp|Q41238|LOX16_SOLTU	***-	Linoleate 9S-lipoxygenase 6	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf21965g00002.1	sp|Q8LL04|CPL3_ARATH	****	RNA polymerase II C-terminal domain phosphatase-like 3	IPR001357 (BRCT domain), IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0004721 (phosphoprotein phosphatase activity), GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf13186g01014.1	sp|O42993|FKBP_SCHPO	-**-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf04784g05006.1			Unknown protein		
Niben101Scf02375g02001.1	emb|CDY63745.1|	*-*-	BnaC05g07770D [Brassica napus]	IPR010410 (Protein of unknown function DUF1005)	
Niben101Scf01983g13002.1	sp|Q5FVJ6|BSCL2_RAT	*-*-	Seipin	IPR009617 (Adipose-regulatory protein, Seipin)	
Niben101Scf02407g13011.1	sp|Q4KKR8|SYGB_PSEF5	--**	Glycine--tRNA ligase beta subunit	IPR006194 (Glycine-tRNA synthetase, heterodimeric)	GO:0000166 (nucleotide binding), GO:0004820 (glycine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006426 (glycyl-tRNA aminoacylation)
Niben101Scf04117g05009.1	sp|A2YQU8|SLU7_ORYSI	*-*-	Pre-mRNA-splicing factor SLU7		
Niben101Scf00646g01022.1	sp|Q9Y6E0|STK24_HUMAN	*-**	Serine/threonine-protein kinase 24	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05506g00009.1	sp|Q9LQQ4|H2B1_ARATH	***-	Histone H2B.1	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf06919g00029.1	AT1G05990.1	****	EF hand calcium-binding protein family LENGTH=150	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf39201g00003.1	sp|Q9M817|PTR6_ARATH	*-*-	Protein NRT1/ PTR FAMILY 1.2	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Ctg16090g00002.1	ref|WP_014243176.1|	*-**	2-oxoglutarate translocator [Bacteriovorax marinus] ref|YP_005034360.1| putative membrane transport protein [Bacteriovorax marinus SJ] emb|CBW25389.1| putative membrane transport protein [Bacteriovorax marinus SJ]	IPR001898 (Sodium/sulphate symporter)	GO:0005215 (transporter activity), GO:0006814 (sodium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00180g00007.1	ref|XP_002521420.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF40910.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01373g02009.1	sp|Q7XSK0|BGL18_ORYSJ	***-	Beta-glucosidase 18	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03404g01012.1	AT3G08740.1	****	elongation factor P (EF-P) family protein LENGTH=236	IPR020599 (Translation elongation factor P/YeiP)	GO:0003746 (translation elongation factor activity), GO:0005737 (cytoplasm), GO:0006414 (translational elongation), GO:0043043 (peptide biosynthetic process)
Niben101Scf03455g04015.1			Unknown protein		
Niben101Scf06008g00007.1	gb|KEH36784.1|	*-*-	xyloglucanase-specific endoglucanase inhibitor protein [Medicago truncatula]	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01942g04020.1			Unknown protein		
Niben101Scf01399g00012.1	sp|A9IYW8|ATPG_BART1	****	ATP synthase gamma chain	IPR000131 (ATPase, F1 complex, gamma subunit), IPR023632 (ATPase, F1 complex, gamma subunit conserved site), IPR023633 (ATPase, F1 complex, gamma subunit domain)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf02071g05002.1	ref|XP_002535265.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF27117.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf20390g00001.1	sp|A3DF94|LEU1_CLOTH	*-*-	2-isopropylmalate synthase	IPR013785 (Aldolase-type TIM barrel), IPR030020 (Hydroxymethylglutaryl-CoA lyase, mitochondrial)	GO:0003824 (catalytic activity), GO:0004419 (hydroxymethylglutaryl-CoA lyase activity), GO:0005739 (mitochondrion), GO:0046951 (ketone body biosynthetic process)
Niben101Scf01409g01006.1	AT1G18160.1	*-**	Protein kinase superfamily protein LENGTH=992	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01001g04009.1	AT4G15010.1	***-	Mitochondrial substrate carrier family protein LENGTH=378	IPR023395 (Mitochondrial carrier domain)	
Niben101Scf02146g00001.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00698g02002.1	gb|KEH33643.1|	*-*-	aldo/keto reductase family oxidoreductase [Medicago truncatula]		
Niben101Scf02133g01001.1	sp|B7GFW3|GATA_ANOFW	***-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR011990 (Tetratricopeptide-like helical domain), IPR023631 (Amidase signature domain)	GO:0005515 (protein binding), GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf04554g07021.1	ref|NP_194330.1|	****	RNA-binding KH domain-containing protein PEPPER [Arabidopsis thaliana] emb|CAB39665.1| putative nucleic acid binding protein [Arabidopsis thaliana] emb|CAB79455.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAL07137.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAM20510.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAM45112.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AEE85142.1| RNA-binding KH domain-containing protein PEPPER [Arabidopsis thaliana]	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf00458g00003.1	gb|EMS62218.1|	--*-	Pre-mRNA-splicing factor SF2 [Triticum urartu]		
Niben101Scf21897g00004.1	sp|Q84TQ7|GAI_GOSHI	*-*-	DELLA protein GAI	IPR005202 (Transcription factor GRAS), IPR030028 (Scarecrow-like protein 26/nodulation signalling pathway 2)	
Niben101Ctg15829g00004.1	ref|XP_002510111.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52298.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf13823g02021.1	sp|Q6IQU6|RPF1_DANRE	*-*-	Ribosome production factor 1		
Niben101Scf01051g02003.1	AT4G17420.1	***-	Tryptophan RNA-binding attenuator protein-like LENGTH=285	IPR002838 (Mitochondrial biogenesis protein AIM24), IPR016031 (Tryptophan RNA-binding attenuator protein-like domain)	
Niben101Scf01182g03013.1	sp|Q9SDS7|VATC_ARATH	****	V-type proton ATPase subunit C	IPR004907 (ATPase, V1 complex, subunit C)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033180 (proton-transporting V-type ATPase, V1 domain)
Niben101Scf01553g02001.1	AT1G45207.2	***-	Remorin family protein LENGTH=555	IPR005516 (Remorin, C-terminal)	
Niben101Scf05918g03001.1	sp|P80595|APY_SOLTU	***-	Apyrase	IPR000407 (Nucleoside phosphatase GDA1/CD39)	GO:0016787 (hydrolase activity)
Niben101Scf03271g02003.1	sp|Q5T2S8|ARMC4_HUMAN	*-*-	Armadillo repeat-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00863g07003.1	sp|Q9FFD5|RIC4_ARATH	-**-	CRIB domain-containing protein RIC4	IPR000095 (CRIB domain)	
Niben101Scf25485g00009.1	sp|Q8L925|CRC_ARATH	***-	Protein CRABS CLAW	IPR006780 (YABBY protein)	
Niben101Scf02401g02015.1	sp|Q9D853|MET10_MOUSE	--*-	Methyltransferase-like protein 10	IPR001737 (Ribosomal RNA adenine methyltransferase KsgA/Erm), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf15120g01014.1	sp|Q2JM43|RS21_SYNJB	--*-	30S ribosomal protein S21	IPR001911 (Ribosomal protein S21)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00854g00031.1	gb|ACZ52183.1|	***-	ribosomal protein L10 (mitochondrion) [Digitalis purpurea]		
Niben101Scf00340g07014.1			Unknown protein		
Niben101Scf09248g06004.1	ref|NP_001150011.1|	***-	sap [Zea mays]	IPR008373 (Saposin)	GO:0005764 (lysosome), GO:0006629 (lipid metabolic process), GO:0006665 (sphingolipid metabolic process)
Niben101Scf13231g02003.1	emb|CDX95105.1|	*-*-	BnaC05g05660D [Brassica napus]		
Niben101Scf05711g02004.1	gb|KEH27808.1|	*-*-	myb transcription factor [Medicago truncatula]		
Niben101Scf04674g04008.1	sp|Q8LBI9|EDL16_ARATH	****	Sugar transporter ERD6-like 16	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf16092g00001.1	sp|Q566M8|RN150_DANRE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01697g19001.1	sp|Q9LS88|PP250_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf18636g00002.1	AT4G23030.1	*-*-	MATE efflux family protein LENGTH=502	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf07939g00004.1	sp|Q1IFV7|RS17_PSEE4	***-	30S ribosomal protein S17	IPR000266 (Ribosomal protein S17), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04015g00001.1	AT3G05170.1	***-	Phosphoglycerate mutase family protein LENGTH=316	IPR001345 (Phosphoglycerate/bisphosphoglycerate mutase, active site), IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00978g09002.1	sp|Q304B9|NCASE_ARATH	***-	Neutral ceramidase	IPR006823 (Neutral/alkaline nonlysosomal ceramidase)	
Niben101Scf20645g00006.1	sp|P15688.2|NU2M_BETVU	*-*-	RecName: Full=NADH-ubiquinone oxidoreductase chain 2; AltName: Full=NADH dehydrogenase subunit 2 (mitochondrion) [Beta vulgaris] emb|CAA34728.1| NADH:ubiquinone reductase subunit 2 [Beta vulgaris subsp. vulgaris]		
Niben101Scf06009g00028.1	sp|Q05B92|TFE3_BOVIN	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf18106g01015.1	ref|XP_003629399.1|	*-*-	Mitochondrial chaperone BCS1 [Medicago truncatula] gb|AET03875.1| P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]		
Niben101Scf15062g00002.1	sp|Q93ZQ5|SPXM3_ARATH	*-**	SPX domain-containing membrane protein	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01950g04002.1			Unknown protein		
Niben101Scf09764g02001.1			Unknown protein		
Niben101Scf02969g01008.1	sp|P37116|NCPR_VIGRR	****	NADPH--cytochrome P450 reductase	IPR001094 (Flavodoxin), IPR023173 (NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3), IPR029039 (Flavoprotein-like)	GO:0005506 (iron ion binding), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00063g06039.1	sp|O80488|PPR23_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02477g00013.1	sp|A2X2K3|2ABB_ORYSI	****	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	IPR000009 (Protein phosphatase 2A, regulatory subunit PR55), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0000159 (protein phosphatase type 2A complex), GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf00426g02002.1	sp|Q0DCM5|MAN6_ORYSJ	***-	Mannan endo-1,4-beta-mannosidase 6	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06996g02034.1	sp|Q0V254|DML1_PHANO	***-	Protein DML1	IPR003008 (Tubulin/FtsZ, GTPase domain), IPR019605 (Misato Segment II tubulin-like domain), IPR029209 (DML1/Misato, tubulin domain)	
Niben101Scf03038g06006.1	AT4G24810.2	****	Protein kinase superfamily protein LENGTH=481	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13920g00005.1	ref|NP_180763.1|	****	Acyl-CoA N-acyltransferases (NAT) superfamily protein [Arabidopsis thaliana] putative alanine acetyl transferase [Arabidopsis thaliana] gb|AAD15401.1| putative alanine acetyl transferase [Arabidopsis thaliana] gb|ABD60717.1| [Arabidopsis thaliana] gb|AEC08624.1| GCN5-related N-acetyltransferase-like protein [Arabidopsis thaliana]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf08653g02006.1	AT1G18030.1	***-	Protein phosphatase 2C family protein LENGTH=351	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf12159g01002.1	emb|CDY21908.1|	***-	BnaC09g00140D [Brassica napus]		
Niben101Scf01222g01012.1	AT2G01430.1	***-	homeobox-leucine zipper protein 17 LENGTH=275	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02860g03005.1			Unknown protein		
Niben101Scf07580g07007.1	emb|CDY00663.1|	*-*-	BnaC03g36470D [Brassica napus]	IPR010605 (Protein of unknown function DUF1191)	
Niben101Scf00725g05007.1	sp|Q8LPF0|TAF2_ARATH	***-	Transcription initiation factor TFIID subunit 2	IPR014782 (Peptidase M1, membrane alanine aminopeptidase, N-terminal), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0008237 (metallopeptidase activity), GO:0008270 (zinc ion binding)
Niben101Scf03952g04005.1	AT2G46495.1	***-	RING/U-box superfamily protein LENGTH=372	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf04778g02012.1	sp|Q6Z382|COPG2_ORYSJ	***-	Coatomer subunit gamma-2	IPR009028 (Coatomer/calthrin adaptor appendage, C-terminal subdomain), IPR013041 (Coatomer/clathrin adaptor appendage, Ig-like subdomain), IPR016024 (Armadillo-type fold), IPR017106 (Coatomer gamma subunit)	GO:0005198 (structural molecule activity), GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030126 (COPI vesicle coat)
Niben101Scf02309g03017.1	ref|XP_002536610.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF25773.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00890g01005.1	ref|XP_002518180.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF44313.1| conserved hypothetical protein [Ricinus communis]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf07736g00004.1	AT4G24290.2	***-	MAC/Perforin domain-containing protein LENGTH=606	IPR020864 (Membrane attack complex component/perforin (MACPF) domain)	
Niben101Scf01505g02031.1	sp|Q0JLS6|RHD3_ORYSJ	*-*-	Protein ROOT HAIR DEFECTIVE 3	IPR008803 (RHD3/Sey1)	
Niben101Scf30199g00003.1			Unknown protein		
Niben101Scf04294g03001.1	sp|Q04799|FMO5_RABIT	****	Dimethylaniline monooxygenase [N-oxide-forming] 5	IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04182g05009.1	sp|Q9JME5|AP3B2_MOUSE	*-**	AP-3 complex subunit beta-2	IPR002553 (Clathrin/coatomer adaptor, adaptin-like, N-terminal), IPR016024 (Armadillo-type fold), IPR026739 (AP complex subunit beta)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030123 (AP-3 adaptor complex)
Niben101Scf00705g02002.1	gb|AES86764.2|	*-*-	TIR-NBS-LRR class disease resistance protein [Medicago truncatula]		
Niben101Scf02283g00003.1	sp|Q9M364|ATX3_ARATH	*-*-	Histone-lysine N-methyltransferase ATX3	IPR000313 (PWWP domain)	
Niben101Scf01696g06035.1	ref|NP_001174997.1|	*-*-	OsI_24483 [Oryza sativa Indica Group] dbj|BAH93725.1| [Oryza sativa Japonica Group]		
Niben101Scf10333g00027.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf05171g00011.1	sp|Q9SVA5|PP357_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00271g02003.1			Unknown protein		
Niben101Scf01082g09004.1	sp|Q8L9K1|ERF99_ARATH	--**	Ethylene-responsive transcription factor 13	IPR001471 (AP2/ERF domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03141g03003.1	emb|CAE04909.2|	--*-	OSJNBa0082E08.6 [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf00894g03001.1	AT1G67080.1	***-	abscisic acid (aba)-deficient 4 LENGTH=220	IPR025461 (Protein of unknown function DUF4281)	
Niben101Scf00919g06003.1	AT5G10020.1	****	Leucine-rich receptor-like protein kinase family protein LENGTH=1048	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf20037g00012.1	sp|Q9SVA5|PP357_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01166g13001.1	sp|P33121|ACSL1_HUMAN	***-	Long-chain-fatty-acid--CoA ligase 1	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf08744g01007.1	ref|XP_007043836.1|	***-	RING finger protein, putative [Theobroma cacao] gb|EOX99667.1| RING finger protein, putative [Theobroma cacao]		
Niben101Scf08597g01029.1	ref|XP_003601543.1|	***-	Ubiquitin and WLM domain-containing protein [Medicago truncatula]	IPR006567 (PUG domain), IPR013536 (WLM), IPR018997 (PUB domain)	GO:0005515 (protein binding)
Niben101Scf02393g02015.1	sp|P34422|DPF6_CAEEL	*-**	Dipeptidyl peptidase family member 6	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf04375g08024.1	sp|Q42533|BCCP1_ARATH	*-*-	Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic		
Niben101Scf04148g01034.1	sp|Q8GUH1|PUB33_ARATH	*-*-	U-box domain-containing protein 33	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf01409g02004.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf28395g00001.1	sp|Q06721|RCA_ANASC	***-	Ribulose bisphosphate carboxylase/oxygenase activase	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02658g00012.1	sp|Q39255|SKP1A_ARATH	***-	SKP1-like protein 1A	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf03624g06004.1	emb|CBM56257.1|	*-**	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01700g03018.1	AT1G08760.1	*-*-	Plant protein of unknown function (DUF936) LENGTH=748	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Scf02116g00011.1	AT5G08630.1	***-	DDT domain-containing protein LENGTH=723	IPR013136 (WSTF/Acf1/Cbp146), IPR018501 (DDT domain superfamily), IPR028941 (WHIM2 domain)	
Niben101Scf13694g00023.1	sp|O14022|CTA5_SCHPO	*-**	Cation-transporting ATPase 5	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0006812 (cation transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0046872 (metal ion binding)
Niben101Scf03868g01013.1	sp|Q9M886|LBD41_ARATH	***-	LOB domain-containing protein 41	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf01125g01006.1	sp|Q9K786|GCSH_BACHD	****	Glycine cleavage system H protein	IPR002930 (Glycine cleavage system H-protein)	GO:0005960 (glycine cleavage complex), GO:0019464 (glycine decarboxylation via glycine cleavage system)
Niben101Scf05872g05008.1	sp|Q7XJE6|MCA1_ARATH	*-*-	Metacaspase-1	IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02581g00008.1	AT4G14100.1	***-	transferases, transferring glycosyl groups LENGTH=206		
Niben101Scf01326g11034.1	sp|O80437|GPAT6_ARATH	***-	Glycerol-3-phosphate 2-O-acyltransferase 6	IPR002123 (Phospholipid/glycerol acyltransferase), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf02840g04005.1	sp|Q9SD82|RFA1B_ARATH	--*-	Replication protein A 70 kDa DNA-binding subunit B	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf02665g12010.1	sp|Q9H321|VCX3B_HUMAN	--*-	Variable charge X-linked protein 3B		
Niben101Scf05634g00003.1	sp|A3PA97|NDK_PROM0	****	Nucleoside diphosphate kinase	IPR001564 (Nucleoside diphosphate kinase)	GO:0004550 (nucleoside diphosphate kinase activity), GO:0005524 (ATP binding), GO:0006165 (nucleoside diphosphate phosphorylation), GO:0006183 (GTP biosynthetic process), GO:0006228 (UTP biosynthetic process), GO:0006241 (CTP biosynthetic process)
Niben101Scf00793g09008.1	AT1G56460.2	*-*-	HIT zinc finger ;PAPA-1-like conserved region LENGTH=532	IPR006880 (INO80 complex subunit B-like conserved region), IPR007529 (Zinc finger, HIT-type), IPR029523 (INO80 complex, subunit Ies2)	GO:0006338 (chromatin remodeling), GO:0006355 (regulation of transcription, DNA-templated), GO:0031011 (Ino80 complex)
Niben101Ctg15507g00001.1	sp|Q6NRL0|PRXD1_XENLA	****	Prolyl-tRNA synthetase associated domain-containing protein 1	IPR007214 (YbaK/aminoacyl-tRNA synthetase-associated domain)	GO:0002161 (aminoacyl-tRNA editing activity)
Niben101Scf10448g00003.1	gb|KEH27490.1|	***-	allyl alcohol dehydrogenase-like protein [Medicago truncatula]		
Niben101Scf06888g02020.1	sp|O81154|CYSK_SOLTU	****	Cysteine synthase	IPR005856 (Cysteine synthase K/M)	GO:0004124 (cysteine synthase activity), GO:0006535 (cysteine biosynthetic process from serine)
Niben101Scf09928g00008.1	AT1G16000.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=86		
Niben101Scf00270g02002.1	sp|P47822|MED21_YEAST	--*-	Mediator of RNA polymerase II transcription subunit 21		
Niben101Scf13856g00015.1	emb|CAA62734.1|	***-	beta-fructofuranosidase (invertase) [Solanum lycopersicum]	IPR001362 (Glycoside hydrolase, family 32), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01433g07013.1	sp|Q9GZT6|CC90B_HUMAN	***-	Coiled-coil domain-containing protein 90B, mitochondrial	IPR024461 (Protein of unknown function DUF1640)	
Niben101Scf06898g02004.1	sp|Q54PM7|NAGK_DICDI	***-	N-acetyl-D-glucosamine kinase	IPR002731 (ATPase, BadF/BadG/BcrA/BcrD type)	
Niben101Scf02455g02002.1	AT1G80490.2	***-	TOPLESS-related 1 LENGTH=1120	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR027728 (Topless family)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04124g05005.1	emb|CAH67466.1|	***-	OsJ_15593 [Oryza sativa Japonica Group]		
Niben101Scf04098g00012.1	AT5G06970.1	***-	Protein of unknown function (DUF810) LENGTH=1101	IPR008528 (Protein of unknown function DUF810)	
Niben101Scf01517g05007.1	AT3G14410.1	***-	Nucleotide/sugar transporter family protein LENGTH=340	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf04950g03003.1			Unknown protein		
Niben101Scf08544g01023.1	sp|Q9FMK7|BT1_ARATH	***-	BTB/POZ and TAZ domain-containing protein 1	IPR000197 (Zinc finger, TAZ-type), IPR011333 (BTB/POZ fold)	GO:0003712 (transcription cofactor activity), GO:0004402 (histone acetyltransferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf16622g00003.1	sp|Q09433|THIO1_CAEEL	***-	Thioredoxin-1	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf14915g00001.1	sp|Q55FS2|STK4L_DICDI	*-**	Serine/threonine-protein kinase 4 homolog B	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00154g05017.1	sp|Q9D0B0|SRSF9_MOUSE	*-*-	Serine/arginine-rich splicing factor 9	IPR001878 (Zinc finger, CCHC-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf10374g00008.1	sp|Q13823|NOG2_HUMAN	*-*-	Nucleolar GTP-binding protein 2	IPR012971 (Nucleolar GTP-binding protein 2, N-terminal domain), IPR024929 (Nucleolar GTP-binding protein 2)	GO:0005730 (nucleolus)
Niben101Scf07234g00008.1	AT4G34980.1	****	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03129g01004.1			Unknown protein		
Niben101Scf03426g02006.1	sp|P53756|PDR18_YEAST	****	ABC transporter ATP-binding protein/permease PDR18	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf06190g02007.1	sp|P31414|AVP1_ARATH	*-**	Pyrophosphate-energized vacuolar membrane proton pump 1	IPR004131 (Pyrophosphate-energised proton pump)	GO:0004427 (inorganic diphosphatase activity), GO:0009678 (hydrogen-translocating pyrophosphatase activity), GO:0015992 (proton transport), GO:0016020 (membrane)
Niben101Scf03065g00007.1	sp|Q07G10|ALKB8_XENTR	***-	Alkylated DNA repair protein alkB homolog 8	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf19138g00007.1	AT5G05330.1	***-	HMG-box (high mobility group) DNA-binding family protein LENGTH=220	IPR009071 (High mobility group box domain)	
Niben101Scf03284g06013.1	gb|AAK13103.1|AC078839_19	*-*-	Helicase-like protein [Oryza sativa Japonica Group]	IPR025476 (Helitron helicase-like domain)	
Niben101Scf03077g01001.1	sp|Q2QQ96|CCA21_ORYSJ	****	Cyclin-A2-1	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Ctg13028g00004.1	sp|Q86YG4|NT5D4_HUMAN	*-*-	5'-nucleotidase domain-containing protein 4	IPR008380 (HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase), IPR023214 (HAD-like domain)	
Niben101Scf00854g11087.1	gb|AAA80307.1|	*-*-	orf154 [Petunia axillaris subsp. parodii]		
Niben101Scf00228g06003.1	sp|Q9SRT0|PUB9_ARATH	***-	U-box domain-containing protein 9	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf02699g01016.1	AT4G02940.1	***-	oxidoreductase, 2OG-Fe(II) oxygenase family protein LENGTH=569	IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	
Niben101Scf02538g00004.1	sp|Q9SIA4|MATE5_ARATH	*-*-	MATE efflux family protein 5	IPR002528 (Multi antimicrobial extrusion protein)	
Niben101Scf18121g00014.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04485g02009.1	sp|Q5FAF2|ISPH_NEIG1	--*-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase		
Niben101Scf00193g06002.1			Unknown protein		
Niben101Scf09509g00011.1	sp|Q9T0D6|PP306_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02325g03024.1	sp|Q9ZW24|GSTU7_ARATH	***-	Glutathione S-transferase U7	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf06349g00010.1	sp|P46824|KLC_DROME	*-*-	Kinesin light chain	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01848g00001.1	AT1G79790.1	****	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=245	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01982g03018.1	gb|AIU50598.1|	***-	accelerated cell death 11, partial [Ricinus communis]	IPR014830 (Glycolipid transfer protein domain)	GO:0005737 (cytoplasm), GO:0017089 (glycolipid transporter activity), GO:0046836 (glycolipid transport), GO:0051861 (glycolipid binding)
Niben101Scf22677g00005.1	AT5G43140.1	****	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein LENGTH=254	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf01502g01001.1	sp|Q7L0R7|RNF44_HUMAN	--*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf17496g00004.1	sp|O04202|EIF3F_ARATH	****	Eukaryotic translation initiation factor 3 subunit F	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR024969 (Rpn11/EIF3F C-terminal domain), IPR027531 (Eukaryotic translation initiation factor 3 subunit F)	GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf00324g00002.1	ref|WP_025921648.1|	*-*-	MULTISPECIES: hypothetical protein [Prochlorococcus]	IPR021659 (Protein of unknown function DUF3252)	
Niben101Scf01376g02002.1	ref|XP_002289915.1|	****	ran binding protein 7 [Thalassi 7 [Thalassiosira pseudonana CCMP1335]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf15156g01004.1	sp|Q8CCN5|BCAS3_MOUSE	*-*-	Breast carcinoma-amplified sequence 3 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR022175 (Breast carcinoma amplified sequence 3)	GO:0005515 (protein binding)
Niben101Scf15823g00016.1	AT1G62305.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=378	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf12673g01032.1	AT5G25310.1	***-	Exostosin family protein LENGTH=480	IPR004263 (Exostosin-like)	
Niben101Scf01220g01017.1			Unknown protein		
Niben101Scf02042g00006.1	sp|Q2YDE3|GOT1B_BOVIN	****	Vesicle transport protein GOT1B	IPR007305 (Vesicle transport protein, Got1/SFT2-like)	GO:0016192 (vesicle-mediated transport)
Niben101Scf03761g00010.1	sp|O61125|STK4_DICDI	*-**	Serine/threonine-protein kinase 4 homolog A	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01349g03016.1	sp|A1A5X2|FBXL7_DANRE	--*-	F-box/LRR-repeat protein 7		
Niben101Scf08195g03012.1	AT4G25300.1	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=356	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf11366g02026.1	sp|Q4JVD9|RUVB_CORJK	--**	Holliday junction ATP-dependent DNA helicase RuvB	IPR010339 (TIP49, C-terminal), IPR012340 (Nucleic acid-binding, OB-fold), IPR027238 (RuvB-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0043141 (ATP-dependent 5'-3' DNA helicase activity)
Niben101Scf03357g00033.1	sp|Q9SSQ2|FB55_ARATH	***-	F-box protein	IPR017451 (F-box associated interaction domain)	
Niben101Scf16189g00003.1	sp|Q2R352|GL111_ORYSJ	***-	Germin-like protein 11-1	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf00820g08011.1	AT4G33510.1	*-**	3-deoxy-d-arabino-heptulosonate 7-phosphate synthase LENGTH=507	IPR002480 (DAHP synthetase, class II)	GO:0003849 (3-deoxy-7-phosphoheptulonate synthase activity), GO:0009073 (aromatic amino acid family biosynthetic process)
Niben101Scf00854g00026.1			Unknown protein		
Niben101Scf02406g02001.1			Unknown protein		
Niben101Scf00803g01018.1	emb|CDX81322.1|	--*-	BnaC09g07330D [Brassica napus]		
Niben101Scf01824g00005.1	sp|F4I214|TET10_ARATH	***-	Tetraspanin-10	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf08841g00007.1			Unknown protein		
Niben101Scf07345g00008.1	sp|P0DH90|FRIGI_ARATH	*-*-	Protein FRIGIDA	IPR012474 (Frigida-like)	
Niben101Scf03925g01010.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf04950g01017.1	sp|Q9UUC8|RM51_SCHPO	***-	54S ribosomal protein L51, mitochondrial	IPR007741 (Ribosomal protein/NADH dehydrogenase domain), IPR012336 (Thioredoxin-like fold)	
Niben101Scf07287g02005.1	sp|Q9FRL5|ZHD5_ARATH	*-*-	Zinc-finger homeodomain protein 5	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf06078g01009.1			Unknown protein		
Niben101Scf02093g05001.1	sp|Q8VZ52|ATG10_ARATH	***-	Ubiquitin-like-conjugating enzyme ATG10		
Niben101Scf11496g01003.1	sp|A8X2R2|ZFPL1_CAEBR	*-**	Zinc finger protein-like 1 homolog	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf10541g00002.1	sp|Q9H0U3|MAGT1_HUMAN	*-*-	Magnesium transporter protein 1	IPR006844 (Magnesium transporter protein 1)	
Niben101Scf16406g00010.1	AT1G10940.2	****	Protein kinase superfamily protein LENGTH=371	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07191g00004.1	ref|NP_001154406.1|	--**	Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana] gb|ABE65693.1| hypothetical protein [Arabidopsis thaliana] gb|AEE32107.1| Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]	IPR018848 (WIYLD domain)	GO:0018024 (histone-lysine N-methyltransferase activity)
Niben101Scf06091g01021.1	AT1G80690.1	***-	PPPDE putative thiol peptidase family protein LENGTH=227	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf10498g01002.1	AT2G01870.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=157		
Niben101Scf09698g01005.1	AT2G41870.1	***-	Remorin family protein LENGTH=274	IPR005516 (Remorin, C-terminal)	
Niben101Scf03380g03006.1	sp|P92943|CLCD_ARATH	****	Chloride channel protein CLC-d	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01980g04006.1			Unknown protein		
Niben101Scf00920g03005.1	ref|XP_007048619.1|	--*-	CAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 1 [Theobroma cacao] gb|EOX92776.1| CAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 1 [Theobroma cacao]		
Niben101Scf03735g02006.1	AT2G17970.1	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=507	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf13916g01003.1	sp|A4GGB2|ATPA_PHAVU	*-**	ATP synthase subunit alpha, chloroplastic	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process)
Niben101Scf13608g00003.1	sp|Q41931|ACCO2_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase 2	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf07423g06002.1	sp|Q9LXH0|NRT26_ARATH	***-	High affinity nitrate transporter 2.6	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf05368g03015.1	sp|Q06721|RCA_ANASC	***-	Ribulose bisphosphate carboxylase/oxygenase activase	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf07576g00018.1	sp|O64705|PP184_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04099g12003.1	ref|NP_001045022.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf02535g04003.1	sp|Q9C9S4|TPPB_ARATH	*-*-	Trehalose-phosphate phosphatase B	IPR023214 (HAD-like domain)	
Niben101Scf01795g17003.1	ref|XP_007048379.1|	***-	Coiled-coil domain-containing protein 18, putative isoform 1 [Theobroma cacao] gb|EOX92536.1| Coiled-coil domain-containing protein 18, putative isoform 1 [Theobroma cacao]		
Niben101Scf02761g01003.1			Unknown protein		
Niben101Scf02665g02009.1	sp|P48620|FAD3C_SESIN	***-	Omega-3 fatty acid desaturase, chloroplastic	IPR005804 (Fatty acid desaturase, type 1), IPR021863 (Protein of unknown function DUF3474)	GO:0006629 (lipid metabolic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0055114 (oxidation-reduction process)
Niben101Scf04134g01017.1			Unknown protein		
Niben101Scf06482g02003.1	sp|O80932|EXPA3_ARATH	***-	Expansin-A3	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf02475g04001.1	AT3G10190.1	****	Calcium-binding EF-hand family protein LENGTH=209	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03766g09005.1	AT5G14500.1	***-	aldose 1-epimerase family protein LENGTH=306	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf07509g01012.1	AT1G53400.1	***-	Ubiquitin domain-containing protein LENGTH=114		
Niben101Scf17607g00005.1	AT4G10465.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=183	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf12528g00009.1	sp|M1BYJ7|ENDB1_SOLTU	****	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04440g00001.1	emb|CDX97836.1|	***-	BnaC04g41030D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf07091g02004.1	sp|Q43216|H2B5_WHEAT	*-*-	Histone H2B.5	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf02235g00001.1	sp|B1A930|PSBD_CARPA	*-**	Photosystem II D2 protein	IPR000484 (Photosynthetic reaction centre, L/M), IPR007207 (CCR4-Not complex component, Not N-terminal domain)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf12403g00010.1	sp|Q7WF12|UBIE_BORBR	*-**	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf05174g06008.1	sp|Q6PBN4|CQ10X_DANRE	*-*-	Coenzyme Q-binding protein COQ10 homolog, mitochondrial	IPR005031 (Streptomyces cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf08142g03001.1	sp|P92668|NU4M_MACRO	--*-	NADH-ubiquinone oxidoreductase chain 4	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf08575g03004.1	AT1G65690.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=252	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf04840g01004.1	AT1G36370.1	****	serine hydroxymethyltransferase 7 LENGTH=598	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase), IPR019775 (WD40 repeat, conserved site)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00863g09004.1	sp|O04479|LBD6_ARATH	***-	LOB domain-containing protein 6	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf07383g11001.1	gb|KEH43276.1|	--*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00272g08006.1	AT2G02960.5	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=275	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022143 (Protein of unknown function DUF3675)	GO:0008270 (zinc ion binding)
Niben101Scf07123g00019.1	sp|Q04739|GAL83_YEAST	*-*-	SNF1 protein kinase subunit beta-3	IPR006828 (Association with the SNF1 complex (ASC) domain), IPR014756 (Immunoglobulin E-set), IPR030067 (SNF1-related protein kinase regulatory subunit beta-1)	GO:0005515 (protein binding), GO:0009744 (response to sucrose), GO:0043562 (cellular response to nitrogen levels)
Niben101Scf04926g06003.1	sp|B4EAW5|DER_BURCJ	--*-	GTPase Der	IPR005688 (Chloroplast protein import component Toc34), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0006886 (intracellular protein transport), GO:0009707 (chloroplast outer membrane), GO:0015450 (P-P-bond-hydrolysis-driven protein transmembrane transporter activity)
Niben101Scf09141g02001.1	sp|Q8RWU5|FBL3_ARATH	***-	F-box/LRR-repeat protein 3	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf04503g01013.1	sp|Q8L7E5|WIT1_ARATH	***-	WPP domain-interacting tail-anchored protein 1		
Niben101Scf07404g04001.1	sp|O64791|SY124_ARATH	***-	Syntaxin-124	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf07515g03017.1	AT5G64290.1	*-**	dicarboxylate transport 2.1 LENGTH=563	IPR001898 (Sodium/sulphate symporter)	GO:0005215 (transporter activity), GO:0006814 (sodium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03488g02007.1	sp|Q945T0|RALF_TOBAC	*-*-	Rapid alkalinization factor	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf23592g00004.1	gb|KEH27856.1|	*-*-	LRR receptor-like kinase family protein [Medicago truncatula]		
Niben101Scf03906g02003.1	AT1G68140.1	*-*-	Protein of unknown function (DUF1644) LENGTH=334	IPR012866 (Protein of unknown function DUF1644), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf03573g00014.1	AT3G22620.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=203	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf03047g01004.1	gb|AAC64222.1|	*-*-	bHLH transcription factor [Arabidopsis thaliana]	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02270g01002.1	sp|Q6FM63|ATG18_CANGA	*-*-	Autophagy-related protein 18	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR022175 (Breast carcinoma amplified sequence 3)	GO:0005515 (protein binding)
Niben101Scf04024g02030.1	AT1G22970.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=357	IPR026907 (Cyclin-D1-binding protein 1)	GO:0051726 (regulation of cell cycle)
Niben101Scf12433g00002.1	sp|Q84Y01|ITPK1_MAIZE	****	Inositol-tetrakisphosphate 1-kinase 1	IPR008656 (Inositol-tetrakisphosphate 1-kinase)	GO:0000287 (magnesium ion binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0032957 (inositol trisphosphate metabolic process), GO:0047325 (inositol tetrakisphosphate 1-kinase activity), GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity), GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
Niben101Scf11512g00011.1	AT5G56960.1	*-*-	basic helix-loop-helix (bHLH) DNA-binding family protein LENGTH=466	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00837g12027.1	AT1G20060.1	*-**	ATP binding microtubule motor family protein LENGTH=970	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf08167g05009.1	sp|Q9FZ95|PUP3_ARATH	*-*-	Purine permease 3	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf02098g02015.1	sp|Q0WRW8|B561K_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf02594g10014.1	sp|Q40585|VATL_TOBAC	****	V-type proton ATPase 16 kDa proteolipid subunit	IPR000245 (V-ATPase proteolipid subunit), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf06724g00001.1	sp|Q057X7|DNAJ_BUCCC	***-	Chaperone protein DnaJ	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain), IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf01951g00023.1	sp|Q39697|TBB2_DAUCA	*-*-	Tubulin beta-2 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf14115g00003.1	sp|Q8L7W2|NUDT8_ARATH	*-*-	Nudix hydrolase 8	IPR003293 (Nudix hydrolase 6-like)	
Niben101Scf01157g02002.1	AT1G76260.1	****	DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2 LENGTH=350	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03262g00018.1	gb|KEH38305.1|	****	APO RNA-binding protein [Medicago truncatula]	IPR023342 (APO domain)	GO:0003723 (RNA binding)
Niben101Scf05411g02015.1	ref|XP_007037468.1|	*-*-	Integrase, catalytic region, putative [Theobroma cacao] gb|EOY21969.1| Integrase, catalytic region, putative [Theobroma cacao]	IPR029472 (Gag-polypeptide of LTR copia-type)	
Niben101Scf01063g04006.1	sp|Q80Y84|KDM5B_MOUSE	*-*-	Lysine-specific demethylase 5B	IPR003347 (JmjC domain), IPR003349 (JmjN domain)	
Niben101Scf02482g01018.1	sp|Q9LYK9|RS263_ARATH	***-	40S ribosomal protein S26-3	IPR000892 (Ribosomal protein S26e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf12373g01006.1	ref|XP_003636799.1|	****	2-aminoethanethiol dioxygenase [Medicago truncatula]	IPR012864 (Cysteamine dioxygenase), IPR014710 (RmlC-like jelly roll fold)	GO:0047800 (cysteamine dioxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Ctg13489g00001.1	sp|Q39172|P1_ARATH	*-**	NADP-dependent alkenal double bond reductase P1	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01941g01008.1	AT4G27450.1	***-	Aluminium induced protein with YGL and LRDR motifs LENGTH=250	IPR024286 (Domain of unknown function DUF3700)	
Niben101Scf06588g02020.1	AT1G61150.1	***-	LisH and RanBPM domains containing protein LENGTH=243	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR013144 (CRA domain), IPR024964 (CTLH/CRA C-terminal to LisH motif domain)	GO:0005515 (protein binding)
Niben101Scf06926g08002.1	emb|CDY20509.1|	*-*-	BnaC04g05350D [Brassica napus]		
Niben101Scf02074g02067.1	sp|A0A352|PSBE_COFAR	***-	Cytochrome b559 subunit alpha	IPR006217 (Photosystem II cytochrome b559, alpha subunit)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf01394g01021.1	sp|F1SVK0|FPOL_METMA	--**	F(420)H(2) dehydrogenase subunit L	IPR001516 (NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf01529g01009.1	sp|Q9P0L0|VAPA_HUMAN	--**	Vesicle-associated membrane protein-associated protein A	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf08304g04013.1	sp|Q5A4W8|BDF1_CANAL	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf06100g01001.1	ref|XP_008601774.1|	--**	cellular nucleic acid-binding protein [Beauveria bassiana ARSEF 2860] gb|EJP62544.1| cellular nucleic acid-binding protein [Beauveria bassiana ARSEF 2860] gb|KGQ04958.1| Cellular nucleic acid-binding protein [Beauveria bassiana D1-5]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf06708g02011.1	sp|O80877|EF4L1_ARATH	*-*-	Protein ELF4-LIKE 1	IPR009741 (Protein of unknown function DUF1313)	
Niben101Scf02378g00009.1	sp|O08863|BIRC3_MOUSE	--*-	Baculoviral IAP repeat-containing protein 3		
Niben101Scf01626g00001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06025g02023.1	gb|AIU50811.1|	***-	AT1G65230-like protein, partial [Solanum tuberosum]	IPR018790 (Protein of unknown function DUF2358)	
Niben101Scf05955g01001.1	AT3G53440.1	*-*-	Homeodomain-like superfamily protein LENGTH=512	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf02174g02010.1	AT5G45040.1	***-	Cytochrome c LENGTH=175	IPR009056 (Cytochrome c-like domain)	GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf04294g05002.1	emb|CAO03015.1|	***-	nodule inception protein [Medicago truncatula var. truncatula]	IPR003035 (RWP-RK domain)	
Niben101Scf04657g06001.1	sp|Q7XHI9|BH084_ARATH	***-	Transcription factor bHLH84	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03062g02023.1	AT4G08330.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=164		
Niben101Scf07223g03001.1	sp|P34080|AQP2_RAT	*-*-	Aquaporin-2	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01482g00006.1	ref|NP_567887.1|	***-	beta-1,3-N-Acetylgluc [Arabidopsis thaliana]		
Niben101Scf02372g00015.1	AT5G26600.2	****	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein LENGTH=475	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf11444g00013.1	AT3G02750.3	***-	Protein phosphatase 2C family protein LENGTH=527	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf00606g03004.1	sp|Q8VXX4|RFC3_ARATH	*-*-	Replication factor C subunit 3	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02828g03017.1			Unknown protein		
Niben101Scf07275g02012.1	sp|P17156|HSP72_MOUSE	***-	Heat shock-related 70 kDa protein 2	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf06172g00005.1	sp|Q54S83|NDUF7_DICDI	***-	NADH dehydrogenase [ubiquinone] complex I, assembly factor 7	IPR003788 (Putative S-adenosyl-L-methionine-dependent methyltransferase MidA), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf05417g02007.1	sp|Q8BW72|KDM4A_MOUSE	*-*-	Lysine-specific demethylase 4A	IPR001606 (ARID DNA-binding domain), IPR003347 (JmjC domain), IPR003349 (JmjN domain), IPR004198 (Zinc finger, C5HC2-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013637 (Lysine-specific demethylase-like domain)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf07288g05014.1	ref|NP_001058543.1|	***-	product [Oryza sativa Japonica Group]	IPR005134 (Uncharacterised protein family UPF0114)	
Niben101Scf00229g02008.1	ref|WP_017312818.1|	***-	epimerase [Fischerella sp. PCC 9339]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf01415g01005.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02059g06014.1	AT2G12646.1	***-	PLATZ transcription factor family protein LENGTH=256	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf02577g00004.1	emb|CDY00503.1|	*-*-	BnaA10g07700D [Brassica napus]		
Niben101Scf35903g00004.1	sp|A2WWV5|ERG1_ORYSI	*-*-	Elicitor-responsive protein 1	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01189g01003.1	sp|Q9SW80|BLH2_ARATH	*-*-	BEL1-like homeodomain protein 2	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02316g03036.1	sp|Q8SQK0|PRS8_ENCCU	***-	26S protease regulatory subunit 8 homolog	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf01283g02004.1	AT1G55915.1	****	zinc ion binding LENGTH=404	IPR001876 (Zinc finger, RanBP2-type), IPR013536 (WLM)	GO:0008270 (zinc ion binding)
Niben101Scf11126g00004.1	sp|A6QLA6|CAF1A_BOVIN	*-*-	Chromatin assembly factor 1 subunit A	IPR022043 (Chromatin assembly factor 1 subunit A)	
Niben101Scf00854g07044.1	sp|P05716|RT14_VICFA	***-	Ribosomal protein S14, mitochondrial		
Niben101Scf33689g00013.1	sp|Q7WTR3|MDTK_ERWAM	--*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00069g13004.1	emb|CDY71620.1|	***-	BnaC05g50380D [Brassica napus]		
Niben101Scf05323g00003.1			Unknown protein		
Niben101Scf03138g01011.1	sp|B9SXY8|CSPLE_RICCO	-**-	CASP-like protein 4D1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf04173g03010.1	sp|Q6DJF8|MET23_XENLA	--*-	Methyltransferase-like protein 23	IPR019410 (Nicotinamide N-methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf03141g04012.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf06662g01009.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf00905g13001.1	emb|CDX97434.1|	***-	BnaC08g12990D [Brassica napus]		
Niben101Scf04283g09005.1	ref|XP_003590651.1|	****	GTP-binding protein engA [Medicago truncatula] gb|AES60902.1| FZO-like protein [Medicago truncatula]	IPR006073 (GTP binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf14643g00008.1	sp|Q9FKI0|FIMB5_ARATH	***-	Fimbrin-5	IPR001715 (Calponin homology domain), IPR011992 (EF-hand domain pair)	GO:0005515 (protein binding)
Niben101Scf02572g04006.1	sp|O24409|IAA19_ARATH	***-	Auxin-responsive protein IAA19	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf19307g00007.1			Unknown protein		
Niben101Scf00463g00016.1	sp|C6VKW6|FTSH_LACPJ	****	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR005936 (Peptidase, FtsH), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Ctg11852g00002.1	gb|KEH32758.1|	*-*-	Non-lysosomal glucosylceramidase [Medicago truncatula]		
Niben101Scf05351g02008.1	ref|NP_001062213.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf02736g01002.1	sp|Q944R7|ANM16_ARATH	****	Protein arginine N-methyltransferase 1.6	IPR025799 (Protein arginine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity)
Niben101Scf01808g00003.1	AT5G47860.1	***-	Protein of unknown function (DUF1350) LENGTH=431	IPR010765 (Protein of unknown function DUF1350), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04300g02007.1	AT3G04970.1	****	DHHC-type zinc finger family protein LENGTH=397	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf09725g00018.1	sp|A0AV96|RBM47_HUMAN	*-**	RNA-binding protein 47	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf09373g00001.1	sp|P40690|ALKE_BABBO	*-*-	Aldo-keto reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf03778g01027.1	sp|Q2UPY3|IF4A_ASPOR	*-**	ATP-dependent RNA helicase eIF4A	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01683g00003.1			Unknown protein		
Niben101Scf05961g02035.1	sp|P70245|EBP_MOUSE	****	3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase	IPR007905 (Emopamil-binding protein)	GO:0016021 (integral component of membrane), GO:0016125 (sterol metabolic process), GO:0047750 (cholestenol delta-isomerase activity)
Niben101Scf01985g01009.1	sp|P23824|GATA2_CHICK	--*-	GATA-binding factor 2		
Niben101Scf02831g03013.1	sp|Q8H1F4|COPZ3_ARATH	***-	Coatomer subunit zeta-3	IPR011012 (Longin-like domain)	GO:0006810 (transport)
Niben101Scf00109g07004.1	ref|XP_007028895.1|	***-	Nucleolar protein gar2-related isoform 2 [Theobroma cacao] gb|EOY09397.1| Nucleolar protein gar2-related isoform 2 [Theobroma cacao]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf08936g09015.1	sp|Q7Q732|DHRS7_ANOGA	****	Dehydrogenase/reductase SDR family protein 7-like	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf03523g01011.1	AT1G33390.1	*-*-	RNA helicase family protein LENGTH=1237	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03396g06008.1	AT1G30910.1	*-*-	Molybdenum cofactor sulfurase family protein LENGTH=318	IPR005303 (MOSC, N-terminal beta barrel)	
Niben101Scf04260g00011.1	sp|Q6NVM6|NOL10_XENTR	*-*-	Nucleolar protein 10		
Niben101Scf08653g04019.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf11288g03008.1			Unknown protein		
Niben101Scf08137g04001.1	sp|A7HMM1|BIOF_FERNB	***-	8-amino-7-oxononanoate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0009058 (biosynthetic process), GO:0016740 (transferase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf04827g04008.1	sp|A4II73|OVCA2_XENTR	*-*-	Ovarian cancer-associated gene 2 protein homolog	IPR001763 (Rhodanese-like domain), IPR005645 (Serine hydrolase FSH), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf12540g00006.1	sp|Q55721|FBT_SYNY3	***-	Folate-biopterin transporter	IPR004324 (Folate-biopterin transporter), IPR020846 (Major facilitator superfamily domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf23557g00007.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf31818g00003.1	AT3G61490.1	*-*-	Pectin lyase-like superfamily protein LENGTH=476	IPR011050 (Pectin lyase fold/virulence factor)	
Niben101Scf03766g16002.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00167g03010.1	sp|Q67ZU1|LIP2_ARATH	***-	Triacylglycerol lipase 2	IPR006693 (Partial AB-hydrolase lipase domain), IPR025483 (Lipase, eukaryotic), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00854g11109.1			Unknown protein		
Niben101Scf07580g05001.1	ref|NP_001055171.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf01830g01024.1	AT4G10630.1	***-	Glutaredoxin family protein LENGTH=334	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf06275g02002.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00180g11008.1	sp|Q92541|RTF1_HUMAN	*-*-	RNA polymerase-associated protein RTF1 homolog	IPR004343 (Plus-3)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006352 (DNA-templated transcription, initiation), GO:0016570 (histone modification)
Niben101Scf09989g01020.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00705g03016.1	sp|Q9XGM3|RPS4C_ARATH	*-*-	Disease resistance protein RPS4		
Niben101Scf01447g01012.1	sp|Q12873|CHD3_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 3	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR005135 (Endonuclease/exonuclease/phosphatase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016197 (Chromo domain-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding)
Niben101Scf10120g01001.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf11646g03015.1	AT1G04620.1	*-*-	coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family LENGTH=462	IPR007525 (Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal)	
Niben101Scf00447g00006.1	AT4G01200.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=250	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01283g02003.1	sp|Q5KQN0|CAX2_ORYSJ	****	Vacuolar cation/proton exchanger 2	IPR004713 (Calcium/proton exchanger)	GO:0006812 (cation transport), GO:0006816 (calcium ion transport), GO:0008324 (cation transmembrane transporter activity), GO:0015369 (calcium:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02191g00008.1	AT4G36380.1	***-	Cytochrome P450 superfamily protein LENGTH=524	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02034g03002.1	gb|AES71403.2|	*-*-	pollen defective IN guidance-like protein [Medicago truncatula]		
Niben101Scf04133g02009.1	ref|XP_002531850.1|	****	calcium ion binding protein, putative [Ricinus communis] gb|EEF30528.1| calcium ion binding protein, putative [Ricinus communis]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00952g03005.1	ref|WP_025929815.1|	***-	cobalt ABC transporter permease [Prochlorococcus sp. scB241_528O2]	IPR003339 (ABC/ECF transporter, transmembrane component)	
Niben101Scf00381g03014.1	dbj|BAB08591.1|	*-*-	trigger factor-like protein [Arabidopsis thaliana]	IPR027304 (Trigger factor/SurA domain)	GO:0006457 (protein folding), GO:0015031 (protein transport)
Niben101Scf12521g00002.1	sp|P46290|RL31_NICGU	*-*-	60S ribosomal protein L31		
Niben101Scf07035g07011.1	sp|Q08752|PPID_HUMAN	*-*-	Peptidyl-prolyl cis-trans isomerase D	IPR011990 (Tetratricopeptide-like helical domain), IPR023114 (Elongated TPR repeat-containing domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0005515 (protein binding)
Niben101Scf04655g03005.1	sp|O80950|JAL22_ARATH	--*-	Jacalin-related lectin 22		
Niben101Scf00307g01038.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03948g01005.1	AT1G06730.1	*-*-	pfkB-like carbohydrate kinase family protein LENGTH=488	IPR029056 (Ribokinase-like)	
Niben101Scf04398g00002.1	gb|AES95732.2|	*-**	bZIP transcription factor family protein [Medicago truncatula]	IPR012900 (G-box binding, MFMR)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00965g02009.1	sp|Q5GUR8|RHLB_XANOR	*-**	ATP-dependent RNA helicase RhlB	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf05797g01004.1	sp|Q9SBV9|CYCLD_ANTMH	*-*-	Transcription factor CYCLOIDEA	IPR005333 (Transcription factor, TCP)	
Niben101Scf03891g03002.1	sp|Q7VYR2|IF2_BORPE	--*-	Translation initiation factor IF-2		
Niben101Scf00854g04037.1			Unknown protein		
Niben101Scf01847g08011.1	AT4G34940.1	***-	armadillo repeat only 1 LENGTH=664	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00150g03003.1	sp|Q9CR60|GOT1B_MOUSE	****	Vesicle transport protein GOT1B	IPR007305 (Vesicle transport protein, Got1/SFT2-like)	GO:0016192 (vesicle-mediated transport)
Niben101Scf00288g06012.1	sp|Q6QI44|NAA25_RAT	*-*-	N-alpha-acetyltransferase 25, NatB auxiliary subunit	IPR019183 (N-acetyltransferase B complex, non-catalytic subunit)	
Niben101Scf03822g00010.1	sp|Q9SII5|EXOL5_ARATH	***-	Protein EXORDIUM-like 5	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf00219g06001.1	sp|Q94A43|BEH2_ARATH	***-	BES1/BZR1 homolog protein 2	IPR008540 (BZR1, transcriptional repressor)	
Niben101Scf02066g05007.1	sp|Q42920|PME_MEDSA	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01701g04003.1	AT3G18210.1	*-*-	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=394		
Niben101Scf06388g02014.1	sp|Q8K4Z5|SF3A1_MOUSE	*-*-	Splicing factor 3A subunit 1	IPR000061 (SWAP/Surp), IPR022030 (Pre-mRNA splicing factor PRP21-like protein)	GO:0003723 (RNA binding), GO:0006396 (RNA processing)
Niben101Scf01498g06002.1	ref|XP_003597995.1|	*-**	Carboxymethylenebutenolidase-like protein [Medicago truncatula] gb|AES68246.1| dienelactone hydrolase family protein [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf07825g06009.1	ref|XP_007015082.1|	*-*-	Myosin-related isoform 1 [Theobroma cacao] gb|EOY32701.1| Myosin-related isoform 1 [Theobroma cacao]		
Niben101Scf06093g00005.1	sp|P0C8Q5|PP336_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04260g02021.1	sp|P34106|ALA2_PANMI	--*-	Alanine aminotransferase 2		
Niben101Scf08304g04014.1	sp|A4YAE8|MDH_SHEPC	****	Malate dehydrogenase	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf05341g01003.1	ref|XP_001464655.1|	--*-	conserved hypothetical protein [Leishmania infantum JPCM5] emb|CAM67053.1| conserved hypothetical protein [Leishmania infantum JPCM5]		
Niben101Scf07987g01001.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02098g02016.1	sp|P40818|UBP8_HUMAN	*-**	Ubiquitin carboxyl-terminal hydrolase 8	IPR006615 (Peptidase C19, ubiquitin-specific peptidase, DUSP domain), IPR028889 (Ubiquitin specific protease domain)	GO:0004843 (ubiquitin-specific protease activity), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf00952g01005.1	AT4G13110.1	*-*-	BSD domain-containing protein LENGTH=316	IPR005607 (BSD)	
Niben101Scf03252g04003.1	sp|P64185|GLPD2_MYCBO	****	Glycerol-3-phosphate dehydrogenase 2	IPR000447 (FAD-dependent glycerol-3-phosphate dehydrogenase), IPR006076 (FAD dependent oxidoreductase)	GO:0004368 (glycerol-3-phosphate dehydrogenase activity), GO:0006072 (glycerol-3-phosphate metabolic process), GO:0009331 (glycerol-3-phosphate dehydrogenase complex), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02594g10015.1	sp|A4VCH4|CP062_DANRE	--*-	UPF0505 protein C16orf62 homolog		
Niben101Scf11724g03004.1	ref|XP_002869579.1|	****	rab GTPase activator [Arabidopsis lyrata subsp. lyrata] gb|EFH45838.1| rab GTPase activator [Arabidopsis lyrata subsp. lyrata]	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf03591g00002.1	gb|AIE42546.1|	*-*-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf00994g02005.1	sp|Q6GJL2|METN1_STAAR	****	Methionine import ATP-binding protein MetN 1	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf03213g02004.1	sp|Q0WLC7|Y5053_ARATH	***-	CBS domain-containing protein CBSCBSPB4	IPR000270 (Phox/Bem1p), IPR000644 (CBS domain)	GO:0005515 (protein binding)
Niben101Scf33318g00002.1	emb|CDX73319.1|	--*-	BnaC05g27870D [Brassica napus]	IPR008004 (Uncharacterised protein family UPF0503)	
Niben101Scf20773g00013.1	ref|XP_007048772.1|	-**-	Ribonuclease H protein [Theobroma cacao] gb|EOX92929.1| Ribonuclease H protein [Theobroma cacao]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf04955g07015.1	gb|ABN08700.1|	*-*-	Endonuclease/exonuclease/phosphatase [Medicago truncatula]		
Niben101Scf09150g02004.1	sp|P54001|P4HA1_RAT	*-*-	Prolyl 4-hydroxylase subunit alpha-1	IPR003582 (ShKT domain), IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03047g01005.1	gb|AAC64222.1|	*-*-	bHLH transcription factor [Arabidopsis thaliana]	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf07400g00011.1	sp|Q62377|U2AFM_MOUSE	*-*-	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2	IPR009145 (U2 auxiliary factor small subunit), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0046872 (metal ion binding)
Niben101Scf05343g00001.1	sp|Q9BRL6|SRSF8_HUMAN	*-*-	Serine/arginine-rich splicing factor 8	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf17540g00018.1	AT1G14430.1	*-*-	glyoxal oxidase-related protein LENGTH=564	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf05190g02005.1	sp|Q8K1A0|METL5_MOUSE	--*-	Methyltransferase-like protein 5	IPR019410 (Nicotinamide N-methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00725g03016.1	ref|XP_007036453.1|	*-*-	ATP-dependent helicase/nuclease subunit A isoform 1 [Theobroma cacao] gb|EOY20954.1| ATP-dependent helicase/nuclease subunit A isoform 1 [Theobroma cacao]		
Niben101Scf00348g14005.1	sp|Q9FEL7|LAX2_MEDTR	***-	Auxin transporter-like protein 2	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Ctg07933g00004.1	gb|EWM28206.1|	*-**	cys met metabolism pyridoxal-phosphate-dependent enzyme [Nannochloropsis gaditana]	IPR000277 (Cys/Met metabolism, pyridoxal phosphate-dependent enzyme)	GO:0030170 (pyridoxal phosphate binding)
Niben101Scf06235g00012.1	AT3G62370.1	****	heme binding LENGTH=361	IPR019020 (Cytochrome c-552/DMSO reductase-like, haem-binding domain)	GO:0020037 (heme binding)
Niben101Scf05392g01009.1	gb|AAD25575.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf06375g00023.1	sp|Q9LXD6|BXL3_ARATH	***-	Beta-D-xylosidase 3	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026891 (Fibronectin type III-like domain), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03925g00006.1	sp|P47735|RLK5_ARATH	*-*-	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Ctg16023g00001.1	sp|Q8LDC8|ERF92_ARATH	*-**	Ethylene-responsive transcription factor 1B	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03766g08003.1	ref|XP_002521486.1|	****	ATP binding protein, putative [Ricinus communis] gb|EEF40976.1| ATP binding protein, putative [Ricinus communis]	IPR013750 (GHMP kinase, C-terminal domain), IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0005524 (ATP binding)
Niben101Scf10306g00028.1	dbj|BAK61830.1|	*-*-	NOL1/NOP2/sun family protein [Citrus unshiu]		
Niben101Scf00404g01014.1	sp|Q7F613|SCAM2_ORYSJ	****	Secretory carrier-associated membrane protein 2	IPR007273 (SCAMP)	GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf11379g00015.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf01509g00004.1	AT4G02900.1	***-	ERD (early-responsive to dehydration stress) family protein LENGTH=785	IPR003864 (Domain of unknown function DUF221), IPR027815 (Domain of unknown function DUF4463)	GO:0016020 (membrane)
Niben101Scf17137g00001.1	AT5G13020.1	***-	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein LENGTH=397	IPR005491 (EMSY N-terminal)	
Niben101Scf10287g01013.1	sp|Q5K4R0|MAD47_ORYSJ	*-*-	MADS-box transcription factor 47	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf10735g00018.1	sp|P43186|BEV1M_BETPN	***-	Major pollen allergen Bet v 1-M/N	IPR000916 (Bet v I domain), IPR023393 (START-like domain), IPR024949 (Bet v I type allergen)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf01964g02001.1	sp|P11410|G6PD_CYBJA	--**	Glucose-6-phosphate 1-dehydrogenase	IPR001282 (Glucose-6-phosphate dehydrogenase)	GO:0004345 (glucose-6-phosphate dehydrogenase activity), GO:0006006 (glucose metabolic process), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05385g02011.1	sp|P51659|DHB4_HUMAN	*-*-	Peroxisomal multifunctional enzyme type 2	IPR029069 (HotDog domain)	
Niben101Scf09792g02022.1	sp|Q6P756|NECP2_RAT	***-	Adaptin ear-binding coat-associated protein 2	IPR011993 (Pleckstrin homology-like domain), IPR012466 (Adaptin ear-binding coat-associated protein 1 NECAP-1)	GO:0006897 (endocytosis), GO:0016020 (membrane)
Niben101Scf12112g02001.1			Unknown protein		
Niben101Scf06769g04024.1	gb|AAY43791.1|	--*-	E6-2 [Gossypium hirsutum]		
Niben101Scf00527g05004.1	AT3G60690.1	***-	SAUR-like auxin-responsive protein family LENGTH=170	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf08445g00007.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01481g01001.1	sp|Q9FLS0|FB253_ARATH	*-*-	F-box protein		
Niben101Scf13203g00003.1	sp|Q42952|NLTP1_TOBAC	****	Non-specific lipid-transfer protein 1	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf08975g02015.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein		
Niben101Scf03981g00005.1	AT5G60580.2	*-*-	RING/U-box superfamily protein LENGTH=494	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf07372g00001.1	sp|Q969G6|RIFK_HUMAN	*-**	Riboflavin kinase	IPR023214 (HAD-like domain), IPR023465 (Riboflavin kinase domain), IPR023468 (Riboflavin kinase)	GO:0008531 (riboflavin kinase activity), GO:0009231 (riboflavin biosynthetic process)
Niben101Scf03969g03009.1			Unknown protein		
Niben101Scf03702g04015.1			Unknown protein		
Niben101Scf03147g02004.1	AT2G37880.1	***-	Protein of unknown function, DUF617 LENGTH=247	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf03169g00010.1	sp|Q7VEJ6|DNAJ_PROMA	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf05373g02019.1	sp|Q9FNA4|ELP1_ARATH	*-*-	Elongator complex protein 1	IPR006849 (IKI3)	
Niben101Scf00435g00005.1	ref|NP_001044500.1|	-**-	product [Oryza sativa Japonica Group]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf02929g06018.1			Unknown protein		
Niben101Scf02350g02013.1	sp|Q7TPN3|PIGV_MOUSE	****	GPI mannosyltransferase 2	IPR007315 (GPI mannosyltransferase 2)	GO:0006506 (GPI anchor biosynthetic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04386g00002.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08026g02046.1	sp|F1MCA7|LRRC7_BOVIN	*-*-	Leucine-rich repeat-containing protein 7	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf00854g09073.1	ref|YP_003275993.1|	--*-	Sec-Y independent protein translocase component (mitochondrion) [Pleurozia purpurea] gb|ACR19377.1| Sec-Y independent protein translocase component [Pleurozia purpurea]		
Niben101Scf01978g01007.1	sp|O16810|ORC1_DROME	*-*-	Origin recognition complex subunit 1	IPR001025 (Bromo adjacent homology (BAH) domain), IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003682 (chromatin binding), GO:0005524 (ATP binding)
Niben101Scf14479g01009.1	ref|XP_007046710.1|	--*-	2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 2 [Theobroma cacao] gb|EOX90867.1| 2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 2 [Theobroma cacao]		
Niben101Scf03365g03011.1	AT4G17940.1	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=274	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Ctg02561g00003.1			Unknown protein		
Niben101Scf00130g09002.1	AT1G48910.1	****	Flavin-containing monooxygenase family protein LENGTH=383	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR016040 (NAD(P)-binding domain), IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09184g02002.1	sp|Q0V7S0|FB39_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf00481g05007.1	sp|Q93ZB9|FACR3_ARATH	*-**	Fatty acyl-CoA reductase 3	IPR016040 (NAD(P)-binding domain), IPR026055 (Fatty acyl-CoA reductase)	GO:0080019 (fatty-acyl-CoA reductase (alcohol-forming) activity)
Niben101Scf00151g10011.1	AT1G04580.1	***-	aldehyde oxidase 4 LENGTH=1337	IPR012675 (Beta-grasp domain), IPR016166 (FAD-binding, type 2), IPR016208 (Aldehyde oxidase/xanthine dehydrogenase)	GO:0003824 (catalytic activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0046872 (metal ion binding), GO:0050660 (flavin adenine dinucleotide binding), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05928g02002.1	sp|Q99J95|CDK9_MOUSE	****	Cyclin-dependent kinase 9	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04071g03014.1	sp|Q9FLV4|Y5248_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain)	
Niben101Scf11028g00002.1			Unknown protein		
Niben101Scf08887g00009.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03959g00004.1	gb|AAT66777.2|	*-*-	Late blight resistance protein, putative [Solanum demissum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf05326g00010.1	ref|NP_001048145.1|	***-	product [Oryza sativa Japonica Group]	IPR008976 (Lipase/lipooxygenase, PLAT/LH2)	GO:0005515 (protein binding)
Niben101Scf01300g00009.1	sp|Q9SRH9|SNL1_ARATH	***-	Paired amphipathic helix protein Sin3-like 1	IPR003822 (Paired amphipathic helix), IPR013194 (Histone deacetylase interacting)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01933g05004.1	sp|Q9FJW4|NDUS4_ARATH	***-	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial	IPR006885 (NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0022900 (electron transport chain)
Niben101Scf01210g00005.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf01478g08020.1	AT5G08580.1	****	Calcium-binding EF hand family protein LENGTH=391	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf25928g00010.1	ref|XP_002521818.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF40628.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00085g04003.1	sp|Q8VY07|EPN1_ARATH	***-	Clathrin interactor EPSIN 1	IPR008942 (ENTH/VHS)	
Niben101Scf02237g06001.1	emb|CDY28677.1|	***-	BnaCnng05630D [Brassica napus]		
Niben101Scf08651g04006.1	sp|C5BZX2|CH10_BEUC1	*-*-	10 kDa chaperonin	IPR020818 (Chaperonin Cpn10)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding)
Niben101Scf01818g08020.1	sp|B8BKI8|MCM2_ORYSI	****	DNA replication licensing factor MCM2	IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027925 (MCM N-terminal domain)	GO:0003677 (DNA binding), GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006270 (DNA replication initiation), GO:0042555 (MCM complex)
Niben101Scf11150g02005.1	sp|Q0ZIV6|YCF2_VITVI	*-*-	Protein Ycf2		
Niben101Scf03714g00006.1	sp|Q3E7D0|NAT12_ARATH	****	Nucleobase-ascorbate transporter 12	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf04777g01011.1	AT3G30280.1	****	HXXXD-type acyl-transferase family protein LENGTH=443	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03600g02024.1	AT4G14605.1	*-**	Mitochondrial transcription termination factor family protein LENGTH=493	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07822g00002.1	AT4G39520.1	****	GTP-binding protein-related LENGTH=369	IPR005225 (Small GTP-binding protein domain), IPR012676 (TGS-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf10152g01002.1	AT5G12470.1	*-*-	Protein of unknown function (DUF3411) LENGTH=386	IPR007314 (Domain of unknown function DUF399), IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf00341g02007.1	sp|O23310|NFYB3_ARATH	****	Nuclear transcription factor Y subunit B-3	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf01585g03005.1	AT4G19400.1	***-	Profilin family protein LENGTH=148	IPR005455 (Profilin)	
Niben101Scf13250g02002.1	gb|ABD33259.2|	-**-	non-LTR retroelement reverse transcriptase-like protein, related [Medicago truncatula]		
Niben101Scf05107g02015.1	ref|XP_007014623.1|	*-*-	Evolutionarily conserved C-terminal region 2 isoform 2 [Theobroma cacao] gb|EOY32242.1| Evolutionarily conserved C-terminal region 2 isoform 2 [Theobroma cacao]		
Niben101Scf09871g00013.1			Unknown protein		
Niben101Scf18306g00005.1	sp|Q9SJ06|FB115_ARATH	--*-	F-box protein	IPR017451 (F-box associated interaction domain)	
Niben101Scf08711g00023.1	AT4G00525.1	***-	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). LENGTH=140		
Niben101Scf08653g07031.1	sp|Q5N0K5|GATA_SYNP6	*-*-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR011990 (Tetratricopeptide-like helical domain), IPR023631 (Amidase signature domain)	GO:0005515 (protein binding), GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf12571g00004.1			Unknown protein		
Niben101Scf09678g00008.1	AT2G29590.1	***-	Thioesterase superfamily protein LENGTH=158	IPR029069 (HotDog domain)	
Niben101Scf05823g01001.1	AT3G04300.1	***-	RmlC-like cupins superfamily protein LENGTH=96	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf04082g05007.1	AT1G69570.1	****	Dof-type zinc finger DNA-binding family protein LENGTH=399	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03929g04005.1	AT5G07990.1	*-*-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf14477g01006.1	sp|A1A5G0|CLAP1_XENTR	*-*-	CLIP-associating protein 1	IPR016024 (Armadillo-type fold), IPR024395 (CLASP N-terminal domain)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf07008g04002.1	gb|KEH39496.1|	*-**	Myb-like DNA-binding domain protein [Medicago truncatula]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf00010g05013.1	AT1G73840.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=388	IPR025742 (Cleavage stimulation factor subunit 2, hinge domain), IPR026896 (Transcription termination and cleavage factor C-terminal domain)	
Niben101Scf03407g01012.1	sp|A1JPA1|MDTK_YERE8	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf07580g01001.1			Unknown protein		
Niben101Scf00451g03023.1	sp|Q9FIW4|BGL42_ARATH	***-	Beta-glucosidase 42	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Ctg10559g00003.1	ref|NP_001060324.1|	*-*-	product [Oryza sativa Japonica Group]	IPR025131 (Domain of unknown function DUF4057)	
Niben101Scf09378g00009.1	sp|Q6Q1P4|SMC1_ARATH	*-*-	Structural maintenance of chromosomes protein 1	IPR003395 (RecF/RecN/SMC, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028468 (Structural maintenance of chromosomes protein 1)	GO:0003682 (chromatin binding), GO:0007064 (mitotic sister chromatid cohesion), GO:0008278 (cohesin complex), GO:0046982 (protein heterodimerization activity)
Niben101Scf00324g02022.1	AT4G23900.1	****	Nucleoside diphosphate kinase family protein LENGTH=237	IPR001564 (Nucleoside diphosphate kinase)	GO:0004550 (nucleoside diphosphate kinase activity), GO:0005524 (ATP binding), GO:0006165 (nucleoside diphosphate phosphorylation), GO:0006183 (GTP biosynthetic process), GO:0006228 (UTP biosynthetic process), GO:0006241 (CTP biosynthetic process)
Niben101Scf03886g02005.1	AT5G50870.2	***-	ubiquitin-conjugating enzyme 27 LENGTH=203	IPR009060 (UBA-like), IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	GO:0005515 (protein binding)
Niben101Scf21890g00010.1	sp|Q6F358|PLA6_ORYSJ	***-	Phospholipase A1-II 6	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf01070g04017.1	sp|Q64434|PTK6_MOUSE	*-**	Protein-tyrosine kinase 6	IPR002912 (ACT domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06825g04006.1	sp|Q5SMI4|RL393_ORYSJ	***-	60S ribosomal protein L39-3	IPR000077 (Ribosomal protein L39e), IPR023626 (Ribosomal protein L39e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01323g03010.1			Unknown protein		
Niben101Scf07311g01002.1			Unknown protein	IPR013880 (Yos1-like)	
Niben101Scf02571g01013.1	gb|KEH31889.1|	***-	aminoacyl-tRNA synthetase [Medicago truncatula]	IPR004022 (DDT domain)	
Niben101Scf12555g00006.1	emb|CDX80520.1|	***-	BnaC07g29240D [Brassica napus]		
Niben101Scf01813g00021.1			Unknown protein		
Niben101Scf00525g03009.1	sp|B5YAR4|DNAJ_DICT6	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR008971 (HSP40/DnaJ peptide-binding)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf00765g00006.1	sp|Q8VXX4|RFC3_ARATH	***-	Replication factor C subunit 3	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf04122g04002.1	gb|KEH39056.1|	***-	wound-responsive family protein [Medicago truncatula]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf00077g08014.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf04375g08025.1	AT5G16400.1	*-*-	thioredoxin F2 LENGTH=185	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf09672g02018.1	AT5G12400.1	****	DNA binding;zinc ion binding;DNA binding LENGTH=1602	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR018501 (DDT domain superfamily), IPR028942 (WHIM1 domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf13429g04022.1	sp|Q8VYK7|ATG8F_ARATH	***-	Autophagy-related protein 8f	IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain)	
Niben101Scf00953g09009.1			Unknown protein		
Niben101Scf02015g07030.1	sp|P40234|CKI2_SCHPO	*-**	Casein kinase I homolog 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf38658g00006.1	AT3G46180.1	***-	UDP-galactose transporter 5 LENGTH=347	IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf05579g03015.1	AT3G45630.1	*-*-	RNA binding (RRM/RBD/RNP motifs) family protein LENGTH=989		
Niben101Ctg13874g00002.1	ref|XP_002518189.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF44322.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11361g02018.1	AT4G25260.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=201	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf01711g00010.1	sp|Q975I1|RL3_SULTO	***-	50S ribosomal protein L3	IPR000597 (Ribosomal protein L3), IPR009000 (Translation protein, beta-barrel domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07214g00012.1	emb|CDY35398.1|	*-*-	BnaA03g19620D [Brassica napus]		
Niben101Scf13694g00024.1			Unknown protein		
Niben101Scf03648g01009.1	sp|B1XHZ3|ATP61_SYNP2	****	ATP synthase subunit a 1	IPR000568 (ATPase, F0 complex, subunit A)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf01694g08002.1	sp|Q7PC88|AB31G_ARATH	*-*-	ABC transporter G family member 31		
Niben101Scf00837g00008.1	ref|XP_002510653.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52840.1| conserved hypothetical protein [Ricinus communis]	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf32276g00001.1	sp|Q8TEQ8|PIGO_HUMAN	*-*-	GPI ethanolamine phosphate transferase 3	IPR017850 (Alkaline-phosphatase-like, core domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01507g01005.1	sp|Q57604|MJK1_METJA	--**	Potassium channel protein 1	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR013099 (Two pore domain potassium channel domain), IPR020683 (Ankyrin repeat-containing domain)	GO:0005249 (voltage-gated potassium channel activity), GO:0005515 (protein binding), GO:0006813 (potassium ion transport), GO:0016020 (membrane)
Niben101Scf04323g01010.1	sp|O74777|KRR1_SCHPO	***-	KRR1 small subunit processome component homolog	IPR004088 (K Homology domain, type 1), IPR024166 (Ribosomal RNA assembly KRR1)	GO:0003723 (RNA binding)
Niben101Scf05087g05001.1	sp|O23169|PP353_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00202g01009.1	AT2G39210.1	***-	Major facilitator superfamily protein LENGTH=601	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf13694g00022.1	AT2G44190.1	*-*-	Family of unknown function (DUF566) LENGTH=474	IPR007573 (Protein of unknown function DUF566)	
Niben101Scf06702g01002.1	ref|XP_007033868.1|	*-*-	RNA-binding ASCH domain protein, putative isoform 1 [Theobroma cacao] gb|EOY04794.1| RNA-binding ASCH domain protein, putative isoform 1 [Theobroma cacao]		
Niben101Scf03309g05002.1	sp|Q7XR52|CYSP1_ORYSJ	****	Cysteine protease 1	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf09368g02003.1	emb|CDY03452.1|	***-	BnaC01g16300D [Brassica napus]		
Niben101Scf01700g03017.1	sp|Q7XHI9|BH084_ARATH	*-*-	Transcription factor bHLH84	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00831g00002.1	AT4G14720.1	***-	TIFY domain/Divergent CCT motif family protein LENGTH=315	IPR010399 (Tify), IPR018467 (CO/COL/TOC1, conserved site)	
Niben101Scf02471g04005.1			Unknown protein		
Niben101Scf15823g00015.1	AT5G43860.1	****	chlorophyllase 2 LENGTH=318	IPR010821 (Chlorophyllase)	GO:0015996 (chlorophyll catabolic process), GO:0047746 (chlorophyllase activity)
Niben101Scf13697g01001.1	sp|Q8RY18|Y5436_ARATH	*-*-	MATH domain-containing protein	IPR008974 (TRAF-like)	GO:0005515 (protein binding)
Niben101Scf03284g06014.1	gb|AAK13103.1|AC078839_19	*-*-	Helicase-like protein [Oryza sativa Japonica Group]		
Niben101Scf28395g00002.1	sp|Q6ZSG1|RN165_HUMAN	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00793g09009.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01688g02025.1	AT4G19190.1	*-*-	zinc knuckle (CCHC-type) family protein LENGTH=595	IPR019339 (CBF1-interacting co-repressor CIR, N-terminal domain)	
Niben101Scf00715g08002.1	sp|Q6L8G0|ZIP5_ORYSJ	--*-	Zinc transporter 5		
Niben101Scf39473g00005.1	sp|P43176|BEV1C_BETPN	--*-	Major pollen allergen Bet v 1-C	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf07474g00018.1	sp|E9PTG8|STK10_RAT	*-**	Serine/threonine-protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00280g02005.1	gb|ADR31620.1|	***-	DUF579 protein [Populus trichocarpa]	IPR021148 (Putative polysaccharide biosynthesis protein)	
Niben101Scf05528g01009.1	sp|Q2TA10|UB2D1_BOVIN	***-	Ubiquitin-conjugating enzyme E2 D1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf04570g06006.1	sp|Q8WSF1|H33_TRIPS	***-	Histone H3.3	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf02275g03021.1	AT5G19400.1	***-	Telomerase activating protein Est1 LENGTH=1059	IPR018834 (DNA/RNA-binding domain, Est1-type), IPR019458 (Telomerase activating protein Est1)	
Niben101Scf03929g04006.1	AT1G72180.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=977	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf13776g02014.1	sp|Q9FLJ4|PP440_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02381g04001.1	sp|Q8NRI0|NADA_CORGL	--*-	Quinolinate synthase A		
Niben101Scf10448g00002.1	sp|Q6NWJ4|DNJC2_DANRE	*-*-	DnaJ homolog subfamily C member 2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02917g00038.1	sp|Q9ZW88|FBL34_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02577g00005.1	emb|CDX86917.1|	*-*-	BnaC03g51870D [Brassica napus]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf00271g06001.1	sp|Q9SXD8|PPR90_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01879g00005.1	dbj|BAB02449.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]	IPR018289 (MULE transposase domain)	
Niben101Scf01066g03011.1	AT3G59350.1	****	Protein kinase superfamily protein LENGTH=408	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05159g01001.1	sp|Q42430|ZFP1_WHEAT	***-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf04950g03004.1			Unknown protein		
Niben101Scf04180g00001.1	AT1G05900.2	***-	endonuclease III 2 LENGTH=386	IPR011257 (DNA glycosylase), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf03738g03021.1			Unknown protein		
Niben101Scf06822g00001.1	sp|O49696|ALMTC_ARATH	*-**	Aluminum-activated malate transporter 12	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf18099g00006.1	AT5G60580.2	***-	RING/U-box superfamily protein LENGTH=494	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf13856g00014.1	ref|XP_007027791.1|	***-	GATA zinc finger domain-containing protein C1393.08 isoform 1 [Theobroma cacao] gb|EOY08293.1| GATA zinc finger domain-containing protein C1393.08 isoform 1 [Theobroma cacao]		
Niben101Scf01433g07012.1	AT5G04330.1	***-	Cytochrome P450 superfamily protein LENGTH=512	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00390g05027.1			Unknown protein		
Niben101Scf21584g00007.1	sp|P33299|PRS7_YEAST	*-*-	26S protease regulatory subunit 7 homolog	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf07234g00009.1	AT3G50660.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05081g01016.1	AT2G37000.1	***-	TCP family transcription factor LENGTH=188	IPR005333 (Transcription factor, TCP)	
Niben101Scf05750g03033.1	sp|Q9ULA0|DNPEP_HUMAN	*-**	Aspartyl aminopeptidase	IPR001948 (Peptidase M18)	GO:0004177 (aminopeptidase activity), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding)
Niben101Scf16622g00002.1	sp|P42743|UBC15_ARATH	***-	Ubiquitin-conjugating enzyme 15	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf01005g08001.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf06305g00004.1	sp|B2IIJ7|IF2_BEII9	****	Translation initiation factor IF-2	IPR000178 (Translation initiation factor aIF-2, bacterial-like), IPR005225 (Small GTP-binding protein domain), IPR009000 (Translation protein, beta-barrel domain), IPR023115 (Translation initiation factor IF- 2, domain 3), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003743 (translation initiation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006413 (translational initiation)
Niben101Scf05633g01001.1	ref|XP_002509436.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF50823.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02712g00006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf17834g00008.1	sp|Q86KK2|FHIT_DICDI	***-	Bis(5'-adenosyl)-triphosphatase	IPR001310 (Histidine triad (HIT) protein), IPR011146 (HIT-like domain)	GO:0003824 (catalytic activity)
Niben101Scf03141g08013.1	emb|CDY46008.1|	*-*-	BnaA02g17880D [Brassica napus]		
Niben101Scf01305g04002.1	AT2G35490.1	***-	Plastid-lipid associated protein PAP / fibrillin family protein LENGTH=376	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf04788g00034.1			Unknown protein		
Niben101Scf08304g05032.1			Unknown protein		
Niben101Scf05385g04023.1	AT1G76190.1	***-	SAUR-like auxin-responsive protein family LENGTH=123	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf04608g02014.1	sp|P35614|ERF1Z_ARATH	****	Eukaryotic peptide chain release factor subunit 1-3	IPR004403 (Peptide chain release factor eRF1/aRF1), IPR029064 (50S ribosomal protein L30e-like)	GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf02289g02014.1	tpg|DAA61317.1|	***-	TPA: hypothetical protein ZEAMMB73_879621 [Zea mays]	IPR029131 (HAUS augmin-like complex subunit 5)	GO:0051225 (spindle assembly)
Niben101Scf01487g02006.1	sp|Q9S7T8|SPZX_ARATH	***-	Serpin-ZX	IPR023796 (Serpin domain)	
Niben101Scf02325g03023.1	sp|P59280|KLHL8_MOUSE	--*-	Kelch-like protein 8	IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf06545g04003.1	AT1G26850.1	*-*-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=616	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf03624g06003.1			Unknown protein		
Niben101Scf00704g03002.1	sp|Q6YYC0|C3H55_ORYSJ	*-*-	Zinc finger CCCH domain-containing protein 55	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf02042g00005.1			Unknown protein		
Niben101Scf15156g01003.1	sp|Q9ZNV9|AHP1_ARATH	***-	Histidine-containing phosphotransfer protein 1	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity)
Niben101Scf00099g00007.1	sp|P0C6U9|R1A_CVM2	--*-	Replicase polyprotein 1a		
Niben101Scf01220g01016.1	gb|AAU90304.1|	***-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf01505g02001.1	AT1G72960.1	*-**	Root hair defective 3 GTP-binding protein (RHD3) LENGTH=795	IPR008803 (RHD3/Sey1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf02840g04004.1	dbj|BAD68127.1|	*-**	helicase-like protein [Oryza sativa Japonica Group]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf02266g02012.1	ref|WP_029326331.1|	***-	globin [Bacillus sp. m3-13]	IPR001486 (Globin, truncated bacterial-like), IPR009050 (Globin-like)	GO:0005506 (iron ion binding), GO:0015671 (oxygen transport), GO:0019825 (oxygen binding), GO:0020037 (heme binding)
Niben101Scf01514g07002.1			Unknown protein		
Niben101Scf05459g00001.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf25430g00012.1			Unknown protein		
Niben101Scf09097g00009.1	sp|Q9M2F1|RS272_ARATH	***-	40S ribosomal protein S27-2	IPR000592 (Ribosomal protein S27e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03226g03006.1	AT2G46150.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=221	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf00226g02002.1	ref|XP_007042169.1|	*-*-	Cryptochrome-interacting basic-helix-loop-helix 1, putative isoform 1 [Theobroma cacao] gb|EOX98000.1| Cryptochrome-interacting basic-helix-loop-helix 1, putative isoform 1 [Theobroma cacao]		
Niben101Ctg14908g00004.1	sp|Q9ZVC9|FRS3_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 3		
Niben101Ctg11103g00003.1	AT5G02370.1	*-**	ATP binding microtubule motor family protein LENGTH=628	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf12443g02013.1	sp|F4K5L5|TBL16_ARATH	***-	Protein trichome birefringence-like 16	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf15072g00004.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02552g01024.1	sp|Q7XWU8|EXPA1_ORYSJ	*-*-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region)
Niben101Scf08672g04008.1	sp|Q0ADY0|DAPE_NITEC	*-*-	Succinyl-diaminopimelate desuccinylase	IPR002933 (Peptidase M20)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf35784g00001.1	AT2G37730.1	***-	Protein of unknown function (DUF604) LENGTH=532	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf02736g08009.1	sp|P42798|R15A1_ARATH	***-	40S ribosomal protein S15a-1	IPR000630 (Ribosomal protein S8)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09456g00019.1	AT3G60390.1	***-	homeobox-leucine zipper protein 3 LENGTH=315	IPR003106 (Leucine zipper, homeobox-associated), IPR006712 (HD-ZIP protein, N-terminal), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06375g04001.1	AT1G78020.1	***-	Protein of unknown function (DUF581) LENGTH=162	IPR007650 (Zf-FLZ domain)	
Niben101Scf00318g10005.1	sp|P48620|FAD3C_SESIN	***-	Omega-3 fatty acid desaturase, chloroplastic	IPR005804 (Fatty acid desaturase, type 1), IPR021863 (Protein of unknown function DUF3474)	GO:0006629 (lipid metabolic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0055114 (oxidation-reduction process)
Niben101Scf07287g02006.1	AT1G53780.2	*-**	peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases LENGTH=620	IPR003959 (ATPase, AAA-type, core), IPR021911 (ATPase family AAA domain-containing protein 3, domain of unknown function DUF3523), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf18898g00001.1	sp|Q54YW8|RPAB3_DICDI	****	DNA-directed RNA polymerases I, II, and III subunit rpabc3	IPR005570 (RNA polymerase, Rpb8)	GO:0006351 (transcription, DNA-templated)
Niben101Scf23592g00003.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Scf03018g14001.1	sp|Q3UX61|NAA11_MOUSE	****	N-alpha-acetyltransferase 11	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf13868g04003.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR001878 (Zinc finger, CCHC-type), IPR007527 (Zinc finger, SWIM-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf01795g01004.1	AT3G04590.2	***-	AT hook motif DNA-binding family protein LENGTH=411	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf00683g03014.1	sp|Q9NGQ2|KIF1_DICDI	*-**	Kinesin-related protein 1	IPR001752 (Kinesin motor domain), IPR010544 (Kinesin-related conserved domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf03380g03005.1	AT4G02050.1	****	sugar transporter protein 7 LENGTH=513	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00644g00016.1	sp|P24008|S5A1_RAT	--*-	3-oxo-5-alpha-steroid 4-dehydrogenase 1	IPR010721 (Protein of unknown function DUF1295)	GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
Niben101Scf10498g01001.1	sp|Q9LXV5|NFYA1_ARATH	****	Nuclear transcription factor Y subunit A-1	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00058g08006.1	sp|Q2QWE9|SGS3_ORYSJ	*-**	Protein SUPPRESSOR OF GENE SILENCING 3 homolog	IPR005380 (XS domain)	GO:0031047 (gene silencing by RNA)
Niben101Scf13290g00002.1	sp|A1S225|RL16_SHEAM	*-*-	50S ribosomal protein L16	IPR000114 (Ribosomal protein L16), IPR008972 (Cupredoxin), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0016020 (membrane), GO:0019843 (rRNA binding)
Niben101Scf03254g13007.1			Unknown protein	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf09284g01009.1	sp|Q9FG85|PP415_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01184g13009.1	AT1G43090.1	*-*-	Pectin lyase-like superfamily protein LENGTH=444	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02390g02012.1	AT3G58800.1	***-	unknown protein; Has 75 Blast hits to 75 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 17; Other Eukaryotes - 5 (source: NCBI BLink). LENGTH=344	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf13608g00002.1	sp|P54001|P4HA1_RAT	--*-	Prolyl 4-hydroxylase subunit alpha-1	IPR003582 (ShKT domain), IPR006620 (Prolyl 4-hydroxylase, alpha subunit)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00920g03006.1	ref|XP_003630954.1|	--*-	PIF-like protein [Medicago truncatula] ref|XP_003630960.1| PIF-like protein [Medicago truncatula] gb|AET05430.1| Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Ctg15571g00004.1			Unknown protein		
Niben101Scf05411g02016.1	sp|Q54UB1|TRM6_DICDI	***-	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6	IPR007316 (Eukaryotic initiation factor 3, gamma subunit)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf01792g00024.1	sp|E9QAU8|RN165_MOUSE	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08338g01026.1	AT1G61890.1	*-*-	MATE efflux family protein LENGTH=501	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02486g06009.1	emb|CDY42556.1|	*-*-	BnaA04g10570D [Brassica napus]		
Niben101Scf07026g00006.1	gb|ABI34321.1|	*-*-	RNase H family protein [Solanum demissum]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf08470g03008.1			Unknown protein		
Niben101Scf04126g04001.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06763g00019.1	ref|XP_002511317.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF51919.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf15442g00002.1	AT2G39140.1	*-*-	pseudouridine synthase family protein LENGTH=410	IPR002942 (RNA-binding S4 domain)	GO:0003723 (RNA binding)
Niben101Scf00321g05030.1	sp|A8HYF2|CLPP_AZOC5	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01626g00002.1			Unknown protein		
Niben101Scf24249g00001.1	sp|Q9SN74|BH047_ARATH	***-	Transcription factor bHLH47	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf13697g00001.1	sp|Q501E6|FLOT1_ARATH	***-	Flotillin-like protein 1	IPR001107 (Band 7 protein)	
Niben101Scf06218g00004.1	ref|XP_002510539.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52726.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02405g05018.1	AT1G21000.1	***-	PLATZ transcription factor family protein LENGTH=246	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf06349g00011.1	sp|O34358|HTRA_BACSU	****	Serine protease Do-like HtrA	IPR001940 (Peptidase S1C), IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity), GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf05107g03003.1	sp|Q9LXT9|CALS3_ARATH	****	Callose synthase 3	IPR003440 (Glycosyl transferase, family 48), IPR023175 (Vacuolar protein sorting-associate protein Vta1/Callose synthase, N-terminal domain), IPR026899 (1,3-beta-glucan synthase subunit FKS1-like, domain-1)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf02564g09011.1	sp|Q04716|RT03_PETHY	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf08936g06009.1	AT4G33495.1	*-*-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=409	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf09401g00008.1	sp|B6YUU9|TRM1_THEON	****	tRNA (guanine(26)-N(2))-dimethyltransferase	IPR002905 (tRNA methyltransferase, Trm1), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0004809 (tRNA (guanine-N2-)-methyltransferase activity), GO:0008033 (tRNA processing)
Niben101Scf14769g01001.1	AT2G36970.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=490	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06853g00014.1	sp|Q9SMZ2|PP347_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03871g04006.1	sp|Q7VM15|RNH_HAEDU	--**	Ribonuclease HI	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf06782g01008.1	sp|P42731|PABP2_ARATH	*-**	Polyadenylate-binding protein 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02919g00020.1	AT3G17850.1	****	Protein kinase superfamily protein LENGTH=1296	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07288g05013.1	sp|B5WWZ8|FAO1_LOTJA	****	Long-chain-alcohol oxidase FAO1	IPR012400 (Alcohol dehydrogenase, long-chain fatty)	GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0046577 (long-chain-alcohol oxidase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09792g02020.1	sp|Q556Y4|KC1_DICDI	****	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00180g07005.1	sp|O04084|SCP31_ARATH	****	Serine carboxypeptidase-like 31	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02828g03016.1			Unknown protein		
Niben101Scf03277g02005.1	emb|CDX79736.1|	*-*-	BnaC03g20720D [Brassica napus]		
Niben101Scf02451g06019.1	sp|Q9T0K7|HIBC6_ARATH	***-	3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf06435g03020.1	sp|Q86WJ1|CHD1L_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 1-like	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf09584g00004.1	ref|WP_009508077.1|	*-*-	riboflavin bi RibD [Acinetobacter sp. WC-323]	IPR016193 (Cytidine deaminase-like)	GO:0003824 (catalytic activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity)
Niben101Scf04292g05001.1	AT3G56170.1	****	Ca-2+ dependent nuclease LENGTH=323	IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding), IPR016071 (Staphylococcal nuclease (SNase-like), OB-fold)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004518 (nuclease activity), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation)
Niben101Scf00955g00004.1	emb|CDY09397.1|	***-	BnaA02g26130D [Brassica napus]		
Niben101Scf02213g03002.1	AT5G51800.1	***-	Protein kinase superfamily protein LENGTH=972		
Niben101Scf10994g00006.1	sp|Q9FLS9|PP441_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Ctg10718g00002.1	sp|P26573|RBS8_NICPL	***-	Ribulose bisphosphate carboxylase small chain 8B, chloroplastic	IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain)	
Niben101Scf00240g03001.1	ref|XP_002533818.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF28571.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03660g02003.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00546g00002.1	sp|Q94AN4|AP2L1_ARATH	****	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg03604g00001.1			Unknown protein	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf09698g01006.1	ref|XP_002519145.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF43356.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf03802g00011.1			Unknown protein		
Niben101Scf06091g01022.1	AT1G15870.1	****	Mitochondrial glycoprotein family protein LENGTH=242	IPR003428 (Mitochondrial glycoprotein)	GO:0005759 (mitochondrial matrix)
Niben101Scf01905g00003.1	AT2G46490.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=134		
Niben101Scf00081g00010.1	AT1G53570.1	*-**	mitogen-activated protein kinase kinase kinase 3 LENGTH=609	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00439g08001.1			Unknown protein		
Niben101Scf07741g05007.1	gb|AFW90556.1|	***-	fiber protein Fb15 [Solanum tuberosum]		
Niben101Scf04686g02008.1			Unknown protein		
Niben101Scf01945g01014.1	sp|P46969|RPE_YEAST	****	Ribulose-phosphate 3-epimerase	IPR000056 (Ribulose-phosphate 3-epimerase-like), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0008152 (metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives)
Niben101Scf03113g03019.1	sp|B1WSG7|DAPAT_CYAA5	*-**	LL-diaminopimelate aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase), IPR019942 (LL-diaminopimelate aminotransferase, plants and Chlamydia type)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0009089 (lysine biosynthetic process via diaminopimelate), GO:0010285 (L,L-diaminopimelate aminotransferase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf04406g04023.1	AT4G00750.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=633	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf06083g00004.1	ref|WP_031237450.1|	***-	nucleoside-diphosphate sugar epimerase [Asticcacaulis sp. AC460]	IPR009367 (Mitochondrial fission protein ELM1-like)	
Niben101Scf08167g05008.1	sp|Q9FZ96|PUP1_ARATH	***-	Purine permease 1	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf00837g12026.1	gb|AFI44276.1|	*-*-	NADH dehydrogenase subunit 5 (mitochondrion) [Silene vulgaris]		
Niben101Scf05158g01011.1	AT1G15550.1	*-*-	gibberellin 3-oxidase 1 LENGTH=358	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02647g00010.1	sp|O35166|GOSR2_MOUSE	****	Golgi SNAP receptor complex member 2	IPR027027 (GOSR2/Membrin/Bos1)	GO:0005795 (Golgi stack), GO:0006810 (transport)
Niben101Scf03573g00015.1	sp|Q9M7R0|ALL8_OLEEU	****	Calcium-binding allergen Ole e 8	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf06926g08001.1	emb|CDY07628.1|	*-*-	BnaA03g18830D [Brassica napus]		
Niben101Scf02400g02015.1	AT1G02120.1	***-	GRAM domain family protein LENGTH=598	IPR004182 (GRAM domain)	
Niben101Scf02074g02066.1	gb|AFI44275.1|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Silene vulgaris]		
Niben101Scf03262g00017.1	gb|AAG31015.1|	*-*-	tospovirus resistance protein C [Solanum lycopersicum]		
Niben101Scf02613g02012.1	sp|Q9ATF5|RL18A_CASSA	***-	60S ribosomal protein L18a	IPR023573 (Ribosomal protein L18a/LX), IPR028877 (50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01721g01006.1	sp|Q9SYK4|IP5PD_ARATH	****	Type I inositol 1,4,5-trisphosphate 5-phosphatase 13	IPR005135 (Endonuclease/exonuclease/phosphatase), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf01157g02003.1	sp|Q9M907|PP217_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01154g18019.1	sp|Q9FIG6|DIR1_ARATH	*-*-	Dirigent protein 1		
Niben101Scf04364g01014.1	sp|Q28222|HSP71_CHLAE	*-*-	Heat shock 70 kDa protein 1	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf02497g01006.1	ref|XP_003627601.1|	*-*-	(+)-neomenthol dehydrogenase [Medicago truncatula]		
Niben101Scf02174g02011.1	sp|A4SR03|LPTD_AERS4	--*-	LPS-assembly protein LptD		
Niben101Scf03255g03006.1	sp|Q54YG5|TPPC5_DICDI	***-	Trafficking protein particle complex subunit 5	IPR007194 (Transport protein particle (TRAPP) component), IPR024096 (NO signalling/Golgi transport  ligand-binding domain)	
Niben101Scf05955g01002.1	ref|XP_007042979.1|	*-*-	Dentin sialoph -related, putative isoform 3 [Theobroma cacao]		
Niben101Scf06410g00001.1	sp|Q43469|SLD1_HELAN	****	Delta(8)-fatty-acid desaturase	IPR012171 (Fatty acid/sphingolipid desaturase)	GO:0005506 (iron ion binding), GO:0006629 (lipid metabolic process), GO:0006633 (fatty acid biosynthetic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03683g01008.1	gb|AES71016.2|	*-*-	integral membrane Yip1 family protein [Medicago truncatula]		
Niben101Scf01204g00024.1	ref|NP_001052968.1|	***-	product [Oryza sativa Japonica Group]	IPR010417 (Embryo-specific 3)	GO:0005515 (protein binding)
Niben101Scf12775g00009.1	sp|F4K687|NMNAT_ARATH	--*-	Nicotinamide mononucleotide adenylyltransferase	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	
Niben101Scf03605g00001.1			Unknown protein		
Niben101Scf17127g00017.1	sp|P93788|REMO_SOLTU	*-*-	Remorin	IPR005516 (Remorin, C-terminal)	
Niben101Scf07223g03002.1	sp|O49399|PP321_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR007651 (Lipin, N-terminal), IPR013209 (LNS2, Lipin/Ned1/Smp2), IPR023214 (HAD-like domain)	
Niben101Scf00618g05002.1	sp|O49603|CVIF2_ARATH	****	Cell wall / vacuolar inhibitor of fructosidase 2	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf08552g00011.1	AT5G19473.1	***-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=99		
Niben101Scf01181g02004.1	emb|CDY51932.1|	***-	BnaAnng11090D [Brassica napus]		
Niben101Scf00606g03003.1	sp|Q9ZPV9|SY112_ARATH	***-	Syntaxin-112	IPR010989 (t-SNARE)	GO:0005515 (protein binding), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf02372g00016.1	gb|KEH43128.1|	*-*-	isopenicillin N epimerase-like protein [Medicago truncatula]		
Niben101Scf00229g02009.1	sp|Q9C8T7|PP101_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03069g01001.1	AT1G12310.1	****	Calcium-binding EF-hand family protein LENGTH=148	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02287g01001.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02475g08001.1	sp|Q84K00|NAC78_ARATH	*-*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00069g13003.1	emb|CDY71620.1|	***-	BnaC05g50380D [Brassica napus]		
Niben101Scf05123g01013.1			Unknown protein		
Niben101Scf03438g06011.1	sp|Q84K00|NAC78_ARATH	*-*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01785g10010.1	sp|P27493|CB22_TOBAC	*-*-	Chlorophyll a-b binding protein 21, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf00023g08006.1	sp|C5D7P0|HIS5_GEOSW	*-**	Imidazole glycerol phosphate synthase subunit HisH	IPR006062 (Histidine biosynthesis), IPR010139 (Imidazole glycerol phosphate synthase, subunit H), IPR014640 (Imidazole glycerol phosphate synthase HisHF), IPR029062 (Class I glutamine amidotransferase-like)	GO:0000105 (histidine biosynthetic process), GO:0000107 (imidazoleglycerol-phosphate synthase activity), GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0008152 (metabolic process), GO:0016763 (transferase activity, transferring pentosyl groups), GO:0016833 (oxo-acid-lyase activity)
Niben101Scf08873g01020.1	sp|Q59LU0|DBP2_CANAL	*-*-	ATP-dependent RNA helicase DBP2	IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01392g03016.1	AT5G24340.1	*-**	3'-5' exonuclease domain-containing protein LENGTH=505	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf01383g03006.1			Unknown protein		
Niben101Scf01362g04017.1	sp|Q9C519|WRKY6_ARATH	*-**	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02225g03010.1	sp|Q7ZV00|OTU6B_DANRE	*-*-	OTU domain-containing protein 6B	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf01269g01012.1	AT1G50820.1	*-*-	Aminotransferase-like, plant mobile domain family protein LENGTH=528	IPR006904 (Protein of unknown function DUF716 (TMEM45)), IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf03538g05008.1	AT5G08250.1	*-*-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00854g11107.1	ref|XP_003588355.1|	*-*-	Mitochondrial protein, putative [Medicago truncatula]		
Niben101Scf07327g01016.1	sp|P93005|PP181_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01368g00018.1	gb|ABF95303.1|	*-*-	expressed protein [Oryza sativa Japonica Group]	IPR022212 (Protein of unknown function DUF3741)	
Niben101Scf01147g05013.1	sp|Q75JQ3|PEX2_DICDI	***-	Peroxisome biogenesis factor 2	IPR006845 (Pex, N-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf00868g01005.1	sp|O22607|MSI4_ARATH	*-*-	WD-40 repeat-containing protein MSI4	IPR022052 (Histone-binding protein RBBP4, N-terminal)	
Niben101Scf00460g04014.1	emb|CAR92295.1|	*-*-	relative to APETALA2 1 [Solanum tuberosum subsp. andigenum]		
Niben101Scf05154g01012.1	ref|XP_007039076.1|	***-	Ribonuclease P protein subunit P38-related isoform 2 [Theobroma cacao] gb|EOY23577.1| Ribonuclease P protein subunit P38-related isoform 2 [Theobroma cacao]	IPR020849 (Small GTPase superfamily, Ras type)	GO:0005525 (GTP binding), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0016020 (membrane)
Niben101Scf01394g01022.1	sp|Q8S8V0|NU5C_ATRBE	*-*-	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic		
Niben101Scf01259g05006.1	gb|EMT07289.1|	***-	Katanin p60 ATPase-containing subunit A-like protein 2 [Aegilops tauschii]	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00773g01001.1	sp|Q9M0X5|CRK25_ARATH	*-**	Cysteine-rich receptor-like protein kinase 25	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11288g03007.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY), IPR018872 (Zn-cluster domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06180g00016.1	sp|Q9W790|TCPA_PALPA	***-	T-complex protein 1 subunit alpha	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf00916g02003.1			Unknown protein		
Niben101Scf08156g10007.1	sp|Q6DII2|SRSF1_XENTR	*-*-	Serine/arginine-rich splicing factor 1	IPR001878 (Zinc finger, CCHC-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf04388g01006.1	sp|Q80TE7|LRRC7_MOUSE	--*-	Leucine-rich repeat-containing protein 7	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf10043g00009.1	sp|P49825|FTSH_ODOSI	*-**	ATP-dependent zinc metalloprotease FtsH	IPR000642 (Peptidase M41)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis)
Niben101Scf00621g07006.1	sp|Q3K935|MSRB_PSEPF	****	Peptide methionine sulfoxide reductase MsrB	IPR011057 (Mss4-like), IPR028427 (Peptide methionine sulfoxide reductase)	GO:0006979 (response to oxidative stress), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0030091 (protein repair), GO:0033743 (peptide-methionine (R)-S-oxide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05954g00014.1	sp|P59234|YIPL_SOLTU	***-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf00288g07018.1	sp|Q1HDT2|CHX24_ARATH	*-**	Cation/H(+) antiporter 24	IPR006153 (Cation/H+ exchanger), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02475g10005.1	sp|Q609C6|PNP_METCA	*-*-	Polyribonucleotide nucleotidyltransferase	IPR008847 (Suppressor of forked), IPR011990 (Tetratricopeptide-like helical domain), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006396 (RNA processing), GO:0006397 (mRNA processing)
Niben101Scf09063g01006.1	sp|Q9SKH2|Y2369_ARATH	***-	BTB/POZ domain-containing protein		
Niben101Scf11688g00002.1	gb|KEH42602.1|	-***	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00228g11014.1	sp|Q941R6|MLP31_ARATH	***-	MLP-like protein 31	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf07400g00012.1	sp|Q4JC00|HELS_SULAC	*-**	ATP-dependent DNA helicase Hel308	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR016438 (RNA helicase, ATP-dependent, SK12/DOB1), IPR025696 (rRNA-processing arch domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf05190g02004.1	sp|Q9H867|MT21D_HUMAN	*-*-	Protein-lysine methyltransferase METTL21D	IPR019410 (Nicotinamide N-methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf03683g02005.1	sp|A4FUI2|RUXE_BOVIN	***-	Small nuclear ribonucleoprotein E	IPR010920 (Like-Sm (LSM) domain), IPR027078 (Small nuclear ribonucleoprotein E)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf00180g11009.1			Unknown protein		
Niben101Scf08394g00001.1	sp|Q01664|TFAP4_HUMAN	--*-	Transcription factor AP-4	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03925g00005.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf09017g00018.1	sp|Q0WUQ1|BAG1_ARATH	****	BAG family molecular chaperone regulator 1	IPR003103 (BAG domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf01830g01025.1	AT1G01110.2	***-	IQ-domain 18 LENGTH=527	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf07589g01006.1	ref|XP_002518340.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF44100.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11646g03014.1	AT4G28720.1	****	Flavin-binding monooxygenase family protein LENGTH=426	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05923g00003.1	AT2G28810.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=340	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05140g02005.1	gb|ABI34321.1|	*-*-	RNase H family protein [Solanum demissum]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf00952g03006.1	AT5G18970.1	***-	AWPM-19-like family protein LENGTH=171	IPR008390 (AWPM-19-like)	
Niben101Scf03129g02009.1	sp|P34164|SIP2_YEAST	***-	SNF1 protein kinase subunit beta-2	IPR006828 (Association with the SNF1 complex (ASC) domain), IPR014756 (Immunoglobulin E-set), IPR030070 (SNF1-related protein kinase regulatory subunit beta-2)	GO:0005515 (protein binding)
Niben101Scf02074g05028.1	sp|P05499|ATP6_TOBAC	--*-	ATP synthase subunit a		
Niben101Scf05060g08002.1	emb|CDX85240.1|	*-*-	BnaC07g25510D [Brassica napus]		
Niben101Scf09360g02001.1	AT2G44260.2	***-	Plant protein of unknown function (DUF946) LENGTH=583	IPR009291 (Vacuolar protein sorting-associated protein 62)	
Niben101Scf08526g01012.1	sp|Q9TVU5|RAB1_THEPA	***-	Ras-related protein Rab-1	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02994g00006.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf01559g04002.1			Unknown protein		
Niben101Scf07599g00012.1	sp|P57057|GLPT_HUMAN	****	Glycerol-3-phosphate transporter	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf06817g00016.1			Unknown protein		
Niben101Scf03906g04004.1	sp|Q9C519|WRKY6_ARATH	*-**	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01964g02002.1	AT1G09420.2	****	glucose-6-phosphate dehydrogenase 4 LENGTH=635	IPR001282 (Glucose-6-phosphate dehydrogenase)	GO:0004345 (glucose-6-phosphate dehydrogenase activity), GO:0006006 (glucose metabolic process), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01579g01039.1	sp|Q9LVQ5|PP432_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03021g00010.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02585g00014.1	sp|Q5WLQ0|RL5_BACSK	***-	50S ribosomal protein L5	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01847g08012.1	sp|O54310|CSP_THEMA	*-*-	Cold shock-like protein	IPR001878 (Zinc finger, CCHC-type), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf00150g03004.1	AT1G28680.1	****	HXXXD-type acyl-transferase family protein LENGTH=451	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03643g02029.1	sp|P32808|COX3_HELAN	*-**	Cytochrome c oxidase subunit 3	IPR000298 (Cytochrome c oxidase subunit III domain)	GO:0015002 (heme-copper terminal oxidase activity), GO:0016020 (membrane)
Niben101Scf04160g02003.1	ref|XP_002509953.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF51340.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03891g03003.1	sp|B3GS44|LRE_ARATH	***-	GPI-anchored protein LORELEI		
Niben101Scf12775g00008.1	sp|Q9SFD8|NFYB9_ARATH	*-*-	Nuclear transcription factor Y subunit B-9	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf00116g04003.1	AT1G11380.1	***-	PLAC8 family protein LENGTH=254	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf06388g02015.1			Unknown protein		
Niben101Scf03591g00003.1	dbj|BAM36190.1|	*-*-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf00994g02004.1	AT4G08850.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf02594g10016.1	sp|Q9LQZ7|BBX21_ARATH	****	B-box zinc finger protein 21	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf08936g09016.1	ref|XP_002514878.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF47432.1| conserved hypothetical protein [Ricinus communis]	IPR008480 (Protein of unknown function DUF761, plant), IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf02098g02017.1	gb|KEH39496.1|	****	Myb-like DNA-binding domain protein [Medicago truncatula]	IPR009057 (Homeodomain-like), IPR022228 (Protein of unknown function DUF3755)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02736g02003.1	sp|Q66K41|Z385C_HUMAN	--**	Zinc finger protein 385C	IPR003604 (Zinc finger, U1-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf12954g00002.1	sp|Q05761|RS13_MAIZE	--*-	40S ribosomal protein S13		
Niben101Scf01998g10005.1	sp|Q9LRW1|LBD22_ARATH	*-*-	LOB domain-containing protein 22	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf01773g05007.1	sp|Q42608|PME_BRACM	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf09052g03001.1	sp|Q32KA4|DNAJ_SHIDS	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf03047g01006.1	sp|Q5R5R4|RUFY2_PONAB	*-*-	RUN and FYVE domain-containing protein 2	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0046872 (metal ion binding)
Niben101Scf00144g00007.1	sp|Q9AST6|VSP55_ARATH	***-	Vacuolar protein sorting-associated protein 55 homolog	IPR007262 (Vacuolar protein sorting 55)	
Niben101Scf11439g00001.1	sp|Q9UKV3|ACINU_HUMAN	*-*-	Apoptotic chromatin condensation inducer in the nucleus	IPR003034 (SAP domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf00167g03011.1	AT3G27090.1	***-	DCD (Development and Cell Death) domain protein LENGTH=296	IPR013989 (Development/cell death domain)	
Niben101Scf08939g02004.1	gb|EEQ87690.1|	--*-	conserved hypothetical protein [Ajellomyces dermatitidis ER-3]		
Niben101Scf28085g00011.1	gb|KEH24722.1|	*-*-	katanin p80 WD40 repeat subunit B1-like protein [Medicago truncatula]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf03403g00007.1	ref|XP_007018249.1|	--*-	Tetratricopeptide repeat-like superfamily protein [Theobroma cacao] gb|EOY15474.1| Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]		
Niben101Scf06775g00039.1	sp|O49564|CRK27_ARATH	*-**	Cysteine-rich receptor-like protein kinase 27	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03113g03018.1	ref|WP_012307378.1|	***-	NAD dependent epimerase/dehydratase family protein [Synechococcus sp. PCC 7002] ref|YP_001735011.1| NAD dependent epimerase/dehydratase family protein [Synechococcus sp. PCC 7002] gb|ACA99755.1| NAD dependent epimerase/dehydratase family protein [Synechococcus sp. PCC 7002]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf20077g00030.1	sp|Q9Y259|CHKB_HUMAN	****	Choline/ethanolamine kinase	IPR011009 (Protein kinase-like domain), IPR026712 (Choline/Ethanolamine kinase)	GO:0016301 (kinase activity), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0046474 (glycerophospholipid biosynthetic process)
Niben101Scf00173g09007.1	sp|Q10Z38|ATPB_TRIEI	*-**	ATP synthase subunit beta	IPR004100 (ATPase, F1 complex alpha/beta subunit, N-terminal domain)	GO:0015992 (proton transport), GO:0046034 (ATP metabolic process)
Niben101Scf04219g01011.1	AT3G20270.1	*-**	lipid-binding serum glycoprotein family protein LENGTH=722	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf09505g01018.1	sp|Q1DCU1|RLMN1_MYXXD	****	Dual-specificity RNA methyltransferase RlmN 1	IPR004383 (Ribosomal RNA large subunit methyltransferase RlmN/Cfr), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0006364 (rRNA processing), GO:0008173 (RNA methyltransferase activity)
Niben101Scf11154g00021.1	sp|A4J2B1|MURG_DESRM	*-**	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	IPR007235 (Glycosyl transferase, family 28, C-terminal), IPR009695 (Diacylglycerol glucosyltransferase, N-terminal)	GO:0005975 (carbohydrate metabolic process), GO:0009247 (glycolipid biosynthetic process), GO:0016758 (transferase activity, transferring hexosyl groups), GO:0030246 (carbohydrate binding), GO:0030259 (lipid glycosylation)
Niben101Scf05697g01005.1	sp|Q1RJT3|ODP2_RICBR	***-	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	IPR000089 (Biotin/lipoyl attachment), IPR001078 (2-oxoacid dehydrogenase acyltransferase, catalytic domain), IPR004167 (E3-binding domain), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf00254g06012.1	ref|XP_002535856.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01269g14004.1			Unknown protein		
Niben101Scf04001g06002.1	sp|Q41001|BCP_PEA	*-*-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf10306g00029.1	sp|C4ZZJ2|RSMF_ECOBW	*-**	Ribosomal RNA small subunit methyltransferase F	IPR023267 (RNA (C5-cytosine) methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf11025g00004.1	ref|XP_002513964.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF48547.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05145g00005.1	sp|O64477|Y2913_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain)	
Niben101Scf12112g02002.1	sp|Q94BZ5|HSFA5_ARATH	****	Heat stress transcription factor A-5	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01146g04001.1	AT2G19680.1	****	Mitochondrial ATP synthase subunit G protein LENGTH=122	IPR006808 (ATPase, F0 complex, subunit G, mitochondrial)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf01653g01004.1	ref|XP_002518181.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF44314.1| conserved hypothetical protein [Ricinus communis]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf12403g00012.1	AT2G12646.1	***-	PLATZ transcription factor family protein LENGTH=256	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf07883g02005.1	AT1G35490.1	****	bZIP family transcription factor LENGTH=300	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08975g02016.1	sp|O80443|GDL46_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf09701g00002.1			Unknown protein		
Niben101Scf02168g04016.1	sp|O80522|GDL2_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01611g11002.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf24096g00038.1	sp|Q9EZ02|PFP_SPITD	****	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase	IPR000023 (Phosphofructokinase domain), IPR011183 (Pyrophosphate-dependent phosphofructokinase PfpB)	GO:0003872 (6-phosphofructokinase activity), GO:0005524 (ATP binding), GO:0006096 (glycolytic process), GO:0047334 (diphosphate-fructose-6-phosphate 1-phosphotransferase activity)
Niben101Scf02937g04006.1	emb|CDY50122.1|	***-	BnaC04g32570D [Brassica napus]		
Niben101Scf05063g00001.1	sp|P01122|RHO_APLCA	*-**	Ras-like GTP-binding protein RHO	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf06879g00001.1	sp|Q9SJ56|BLH1_ARATH	***-	BEL1-like homeodomain protein 1	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00966g01002.1	sp|P41098|RL34_TOBAC	***-	60S ribosomal protein L34	IPR008195 (Ribosomal protein L34Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf26315g00007.1	sp|Q9SKN2|DRB2_ARATH	***-	Double-stranded RNA-binding protein 2	IPR014720 (Double-stranded RNA-binding domain)	
Niben101Scf09112g01002.1	gb|AIT42219.1|	-**-	metallocarboxypeptidase inhibitor [Solanum tuberosum]	IPR004231 (Carboxypeptidase A inhibitor-like)	
Niben101Scf02132g01013.1	AT1G74720.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1081	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf04457g03006.1	sp|Q766C3|NEP1_NEPGR	--*-	Aspartic proteinase nepenthesin-1	IPR021109 (Aspartic peptidase domain)	
Niben101Scf03858g01004.1	sp|Q5PQQ4|PIGC_RAT	--**	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C	IPR009450 (Phosphatidylinositol N-acetylglucosaminyltransferase subunit C)	GO:0006506 (GPI anchor biosynthetic process), GO:0016021 (integral component of membrane), GO:0017176 (phosphatidylinositol N-acetylglucosaminyltransferase activity)
Niben101Scf02830g02034.1	emb|CDY32792.1|	*-*-	BnaA10g10570D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf05615g03001.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf29357g00009.1	sp|D0LWB8|FTSH_HALO1	--*-	ATP-dependent zinc metalloprotease FtsH		
Niben101Scf09811g00009.1	ref|XP_003628568.1|	*-*-	Replication factor A protein [Medicago truncatula]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf01881g02001.1	AT2G13560.1	****	NAD-dependent malic enzyme 1 LENGTH=623	IPR001891 (Malic oxidoreductase)	GO:0004470 (malic enzyme activity), GO:0004471 (malate dehydrogenase (decarboxylating) (NAD+) activity), GO:0006108 (malate metabolic process), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01550g00007.1	sp|A2AWA9|RBGP1_MOUSE	--**	Rab GTPase-activating protein 1	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf00854g09074.1			Unknown protein		
Niben101Scf10753g01020.1	sp|F4IDU4|MBOA1_ARATH	***-	Lysophospholipid acyltransferase 1	IPR004299 (Membrane bound O-acyl transferase, MBOAT)	
Niben101Scf04614g03001.1	sp|Q3SJR5|RLME_THIDA	*-**	Ribosomal RNA large subunit methyltransferase E	IPR015507 (Ribosomal RNA large subunit methyltransferase E), IPR024576 (Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0001510 (RNA methylation), GO:0005634 (nucleus), GO:0006364 (rRNA processing), GO:0008168 (methyltransferase activity), GO:0008649 (rRNA methyltransferase activity), GO:0031167 (rRNA methylation), GO:0032259 (methylation)
Niben101Ctg16016g00003.1	AT2G28690.1	***-	Protein of unknown function (DUF1635) LENGTH=231	IPR012862 (Protein of unknown function DUF1635)	
Niben101Scf02929g06017.1			Unknown protein		
Niben101Scf15958g00003.1	AT5G34930.1	*-**	arogenate dehydrogenase LENGTH=640	IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR012070 (Arogenate/prephenate dehydrogenase)	GO:0004665 (prephenate dehydrogenase (NADP+) activity), GO:0006571 (tyrosine biosynthetic process), GO:0008977 (prephenate dehydrogenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03307g06009.1	sp|B0S230|PFKA_FINM2	*-**	ATP-dependent 6-phosphofructokinase	IPR000023 (Phosphofructokinase domain), IPR012004 (Pyrophosphate-dependent phosphofructokinase TP0108), IPR022953 (Phosphofructokinase)	GO:0003872 (6-phosphofructokinase activity), GO:0005524 (ATP binding), GO:0006002 (fructose 6-phosphate metabolic process), GO:0006096 (glycolytic process)
Niben101Scf02062g04006.1			Unknown protein		
Niben101Scf33251g00002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf17753g00002.1	sp|Q871G3|DRE2_NEUCR	*-**	Fe-S cluster assembly protein dre2	IPR007785 (Anamorsin)	GO:0005737 (cytoplasm), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf01719g08001.1	sp|Q7PC83|AB41G_ARATH	***-	ABC transporter G family member 41	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00928g00002.1	AT5G59560.1	***-	sensitivity to red light reduced protein (SRR1) LENGTH=275	IPR012942 (Sensitivity To Red Light Reduced-like, SRR1)	
Niben101Scf00440g01009.1	sp|Q8LGG8|USPAL_ARATH	-***	Universal stress protein A-like protein	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf21890g00011.1	sp|Q94AY3|DRIP2_ARATH	***-	E3 ubiquitin protein ligase DRIP2	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09456g00018.1	gb|AAF14244.1|AF110228_1	*-*-	nuclear RNA binding protein A [Spinacia oleracea]	IPR006861 (Hyaluronan/mRNA-binding protein), IPR019084 (Stm1, N-terminal)	
Niben101Scf07008g00029.1	sp|P0CM87|COX19_CRYNB	***-	Cytochrome c oxidase assembly protein COX19	IPR010625 (CHCH)	
Niben101Scf07423g06001.1	sp|O82811|NRT21_ARATH	***-	High-affinity nitrate transporter 2.1	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf01054g13007.1	AT1G15910.1	***-	XH/XS domain-containing protein LENGTH=634	IPR005379 (Uncharacterised domain XH), IPR005380 (XS domain), IPR005381 (Zinc finger-XS domain)	GO:0031047 (gene silencing by RNA)
Niben101Scf02668g02001.1	sp|P94598|DHE3_BACTN	***-	Glutamate dehydrogenase	IPR006095 (Glutamate/phenylalanine/leucine/valine dehydrogenase), IPR016040 (NAD(P)-binding domain)	GO:0006520 (cellular amino acid metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07018g06007.1	AT5G05930.1	***-	guanylyl cyclase 1 LENGTH=274	IPR018616 (Guanylyl cyclase)	
Niben101Scf12623g00005.1	sp|Q9C6X2|SCAM4_ARATH	****	Secretory carrier-associated membrane protein 4	IPR007273 (SCAMP)	GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf00875g14001.1			Unknown protein		
Niben101Scf06631g00010.1	AT3G15940.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=697	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf03105g00008.1	AT5G65470.1	***-	O-fucosyltransferase family protein LENGTH=504	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf00802g00010.1	sp|P47895|AL1A3_HUMAN	****	Aldehyde dehydrogenase family 1 member A3	IPR015657 (Aminobutyraldehyde dehydrogenase), IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf02073g04012.1	sp|O82528|RL15_PETHY	***-	60S ribosomal protein L15	IPR000439 (Ribosomal protein L15e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf13558g01018.1	sp|Q8GXU9|FAF2_ARATH	*-*-	Protein FANTASTIC FOUR 2	IPR021410 (The fantastic four family)	
Niben101Scf06909g02011.1			Unknown protein		
Niben101Scf11366g02028.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01409g00016.1	AT5G57090.1	***-	Auxin efflux carrier family protein LENGTH=647	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02544g01011.1	ref|NP_172639.2|	--*-	ankyrin repeat family protein [Arabidopsis thaliana] gb|AEE28777.1| ankyrin repeat family protein [Arabidopsis thaliana]		
Niben101Scf05134g03004.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf16189g00001.1	AT3G13110.1	****	serine acetyltransferase 2;2 LENGTH=391	IPR005881 (Serine O-acetyltransferase)	GO:0005737 (cytoplasm), GO:0006535 (cysteine biosynthetic process from serine), GO:0009001 (serine O-acetyltransferase activity), GO:0016740 (transferase activity)
Niben101Scf08887g00008.1	sp|Q0WPW4|ACCO5_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase 5	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf11379g00014.1	AT2G35605.1	***-	SWIB/MDM2 domain superfamily protein LENGTH=109	IPR003121 (SWIB/MDM2 domain)	GO:0005515 (protein binding)
Niben101Scf03761g00012.1	AT4G25500.1	****	arginine/serine-rich splicing factor 35 LENGTH=350	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR029536 (Arginine/serine-rich-splicing factor RSP31)	GO:0000166 (nucleotide binding), GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005681 (spliceosomal complex)
Niben101Scf05099g00008.1	sp|Q58DI9|ARL11_BOVIN	***-	ADP-ribosylation factor-like protein 11	IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction)
Niben101Ctg11036g00004.1	sp|Q8LQ68|HXK6_ORYSJ	*-*-	Hexokinase-6	IPR001312 (Hexokinase)	GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf01409g12015.1	AT4G30360.1	*-*-	cyclic nucleotide-gated channel 17 LENGTH=720		
Niben101Ctg15917g00002.1	sp|Q55E69|SYS1_DICDI	***-	Protein SYS1 homolog	IPR019185 (Integral membrane protein SYS1-related)	
Niben101Scf02864g02004.1	AT5G49410.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=145		
Niben101Scf08651g04007.1	sp|Q6P7N1|MAK16_XENTR	*-*-	Protein MAK16 homolog	IPR006958 (Mak16 protein), IPR029004 (Ribosomal L28e/Mak16)	
Niben101Scf01478g08021.1	AT3G19960.2	****	myosin 1 LENGTH=1176	IPR000048 (IQ motif, EF-hand binding site), IPR027401 (Myosin-like IQ motif-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf00085g04002.1	sp|Q9SZE4|VP322_ARATH	*-**	Vacuolar protein sorting-associated protein 32 homolog 2	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf36944g00005.1	sp|Q9FE06|EXOL2_ARATH	***-	Protein EXORDIUM-like 2	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf04657g07001.1	sp|Q42430|ZFP1_WHEAT	***-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf08653g07030.1	AT3G17980.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=177	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf04950g01016.1	sp|Q9QY80|HACD1_MOUSE	***-	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1	IPR007482 (Protein-tyrosine phosphatase-like, PTPLA)	
Niben101Scf16592g00007.1	sp|A2QI25|DED1_ASPNC	*-**	ATP-dependent RNA helicase ded1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01417g04002.1	sp|Q9LZW3|PUB16_ARATH	***-	U-box domain-containing protein 16	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf08711g00022.1	sp|Q80WS3|FBLL1_MOUSE	*-**	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1	IPR000692 (Fibrillarin), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0006364 (rRNA processing), GO:0008033 (tRNA processing), GO:0008168 (methyltransferase activity)
Niben101Scf07822g00001.1	gb|KEH18466.1|	***-	myb transcription factor [Medicago truncatula]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07465g02005.1	AT5G39590.1	***-	TLD-domain containing nucleolar protein LENGTH=542	IPR006571 (TLDc domain)	
Niben101Scf01330g02010.1	sp|Q6YXZ7|ANM5_ORYSJ	****	Protein arginine N-methyltransferase 5	IPR025799 (Protein arginine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity)
Niben101Scf30106g00004.1	sp|A8I3Z3|NUOD_AZOC5	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07321g00039.1	ref|XP_003638652.1|	*-**	Squamous cell carcinoma antigen recognized by T-cells [Medicago truncatula]	IPR008669 (LSM-interacting domain), IPR011990 (Tetratricopeptide-like helical domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Scf04763g02043.1	gb|AET00069.2|	***-	early nodulin-like protein [Medicago truncatula]	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf03261g00003.1			Unknown protein		
Niben101Scf01985g03008.1	AT4G03115.1	***-	Mitochondrial substrate carrier family protein LENGTH=314	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf10650g01003.1	sp|Q9LK08|HIBC7_ARATH	*-*-	3-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial	IPR029045 (ClpP/crotonase-like domain)	
Niben101Scf01756g02027.1			Unknown protein		
Niben101Scf00128g05008.1	sp|Q9STS6|LBD27_ARATH	*-*-	LOB domain-containing protein 27	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf02350g02012.1	AT3G32940.1	*-**	RNA-binding KH domain-containing protein LENGTH=607	IPR004088 (K Homology domain, type 1)	GO:0003723 (RNA binding)
Niben101Scf02399g02004.1	AT2G22590.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=470	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf14477g01007.1	AT3G59500.1	***-	Integral membrane HRF1 family protein LENGTH=269	IPR005578 (Hrf1)	
Niben101Scf07226g07005.1	sp|O03376|AOX3_SOYBN	****	Alternative oxidase 3, mitochondrial	IPR002680 (Alternative oxidase)	GO:0009916 (alternative oxidase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02420g02001.1			Unknown protein		
Niben101Scf02511g06008.1	AT5G50400.1	****	purple acid phosphatase 27 LENGTH=611	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf09184g02003.1	AT5G66690.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=481	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04860g02011.1	sp|Q40478|ERF5_TOBAC	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04082g05006.1			Unknown protein		
Niben101Scf10887g01004.1	sp|Q9M367|BECN1_ARATH	*-*-	Beclin-1-like protein	IPR007243 (Atg6/Beclin)	GO:0006914 (autophagy)
Niben101Scf06847g00002.1	AT3G53580.1	****	diaminopimelate epimerase family protein LENGTH=362	IPR001653 (Diaminopimelate epimerase, DapF)	GO:0008837 (diaminopimelate epimerase activity), GO:0009089 (lysine biosynthetic process via diaminopimelate)
Niben101Scf07576g01004.1	sp|Q8LB02|SDHB2_ARATH	****	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial	IPR004489 (Succinate dehydrogenase/fumarate reductase iron-sulphur protein), IPR009051 (Alpha-helical ferredoxin), IPR012675 (Beta-grasp domain), IPR017896 (4Fe-4S ferredoxin-type, iron-sulphur binding domain)	GO:0006099 (tricarboxylic acid cycle), GO:0009055 (electron carrier activity), GO:0016491 (oxidoreductase activity), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07763g01003.1	AT3G14170.1	***-	Plant protein of unknown function (DUF936) LENGTH=505	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Scf02320g00022.1	sp|Q9SUT9|RTNLB_ARATH	***-	Reticulon-like protein B2	IPR003388 (Reticulon)	
Niben101Scf05220g00004.1			Unknown protein		
Niben101Scf08447g00001.1			Unknown protein		
Niben101Scf07311g01003.1	AT3G11320.1	***-	Nucleotide-sugar transporter family protein LENGTH=308	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf11737g00033.1	sp|Q9S709|U2AFA_ARATH	*-*-	Splicing factor U2af small subunit A	IPR009145 (U2 auxiliary factor small subunit), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0046872 (metal ion binding)
Niben101Scf02913g00028.1	sp|Q42656|AGAL_COFAR	***-	Alpha-galactosidase	IPR000111 (Glycoside hydrolase, clan GH-D)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07945g00002.1	AT5G49690.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02755g05005.1			Unknown protein		
Niben101Scf00439g10053.1	emb|CDY30072.1|	***-	BnaC05g09480D [Brassica napus]		
Niben101Scf07527g02015.1	emb|CDY56786.1|	***-	BnaA01g35980D [Brassica napus]		
Niben101Scf11823g00020.1	sp|Q504M8|RAB26_MOUSE	***-	Ras-related protein Rab-26	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00077g08013.1	sp|P14233|TGA1B_TOBAC	*-**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03038g05003.1	sp|Q8YPE9|ATKB1_NOSS1	*-**	Potassium-transporting ATPase B chain 1	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0006812 (cation transport), GO:0016021 (integral component of membrane), GO:0019829 (cation-transporting ATPase activity), GO:0046872 (metal ion binding)
Niben101Scf05553g04009.1	sp|C5A5Y9|SYFA_THEGJ	*-**	Phenylalanine--tRNA ligase alpha subunit	IPR002319 (Phenylalanyl-tRNA synthetase)	GO:0000049 (tRNA binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0043039 (tRNA aminoacylation)
Niben101Ctg14099g00002.1	sp|Q2TA14|PCP_BOVIN	*-**	Lysosomal Pro-X carboxypeptidase	IPR008758 (Peptidase S28)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf00224g00003.1	sp|Q70Z17|NAP1C_TOBAC	*-*-	Nucleosome assembly protein 1;3		
Niben101Scf03959g00003.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf00953g09008.1			Unknown protein		
Niben101Scf05764g05020.1	AT4G36280.1	***-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=626	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf01210g00006.1	sp|P29923|NQO11_PARDE	****	NADH-quinone oxidoreductase subunit 11	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf14323g02010.1	sp|Q3EBY8|FB111_ARATH	--*-	F-box protein		
Niben101Scf04570g06007.1	sp|Q754B9|ERG3_ASHGO	***-	C-5 sterol desaturase	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf12405g00019.1	sp|Q9PGC1|CLPB_XYLFA	***-	Chaperone protein ClpB	IPR001270 (ClpA/B family), IPR019489 (Clp ATPase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028299 (ClpA/B, conserved site 2)	GO:0005524 (ATP binding)
Niben101Scf00214g03002.1	sp|Q9LYZ9|PP362_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06093g00004.1	emb|CDX81035.1|	--*-	BnaC03g02890D [Brassica napus]		
Niben101Scf01700g03016.1	sp|Q7XHI9|BH084_ARATH	--*-	Transcription factor bHLH84		
Niben101Scf02663g00025.1	sp|Q969V3|NCLN_HUMAN	***-	Nicalin	IPR008710 (Nicastrin), IPR018247 (EF-Hand 1, calcium-binding site)	GO:0016021 (integral component of membrane), GO:0016485 (protein processing)
Niben101Scf04690g02025.1			Unknown protein		
Niben101Scf03600g02023.1	sp|Q99NH0|ANR17_MOUSE	*-*-	Ankyrin repeat domain-containing protein 17	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf17872g00011.1	ref|XP_007025376.1|	*-*-	D-mann with Apple-like carbohydrate-binding domain, putative [Theobroma cacao]		
Niben101Scf01694g08003.1	sp|O34392|YTRE_BACSU	*-**	ABC transporter ATP-binding protein YtrE	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf07250g01004.1	AT5G66120.2	****	3-dehydroquinate synthase, putative LENGTH=442	IPR016037 (3-dehydroquinate synthase AroB)	GO:0003856 (3-dehydroquinate synthase activity), GO:0005737 (cytoplasm), GO:0009073 (aromatic amino acid family biosynthetic process)
Niben101Scf13250g02001.1	sp|Q9LQ16|PPR94_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00870g15020.1	AT4G26060.1	*-*-	Ribosomal protein L18ae family LENGTH=133		
Niben101Scf08859g00010.1			Unknown protein		
Niben101Scf04122g03002.1	emb|CBM56257.1|	*-*-	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	
Niben101Scf03284g06015.1	gb|ABF97674.1|	*-*-	expressed protein [Oryza sativa Japonica Group]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf00245g05008.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00474g06009.1	sp|Q6TEP1|F91A1_DANRE	*-*-	Protein FAM91A1	IPR028091 (FAM91, N-terminal domain), IPR028097 (FAM91, C-terminal domain)	
Niben101Scf01208g03019.1	AT1G28760.1	***-	Uncharacterized conserved protein (DUF2215) LENGTH=476	IPR019358 (Transmembrane protein 194)	
Niben101Scf01436g03003.1	sp|Q90ZL4|LIS1_XENLA	*-*-	Lissencephaly-1 homolog	IPR006594 (LisH dimerisation motif), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03307g01014.1	sp|Q8VZU9|DERL1_ARATH	*-*-	Derlin-1	IPR007599 (Derlin), IPR018609 (Bud13)	
Niben101Scf23299g00008.1	sp|Q2Y9Y7|BIOH_NITMU	***-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02904g05011.1	AT4G00340.1	****	receptor-like protein kinase 4 LENGTH=818	IPR000742 (Epidermal growth factor-like domain), IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf04148g01032.1	AT3G19770.1	*-*-	Vacuolar sorting protein 9 (VPS9) domain LENGTH=520	IPR003123 (Vacuolar sorting protein 9)	
Niben101Scf26775g00008.1			Unknown protein		
Niben101Scf01049g03007.1	sp|Q46909|YGCS_ECOLI	*-**	Inner membrane metabolite transport protein YgcS	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf08195g01011.1	gb|KEH19984.1|	*-*-	flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula]	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf08298g00011.1	sp|Q6NYW6|CLAP2_DANRE	*-*-	CLIP-associating protein 2	IPR016024 (Armadillo-type fold), IPR024395 (CLASP N-terminal domain)	GO:0005488 (binding)
Niben101Scf00271g06002.1	sp|Q14376|GALE_HUMAN	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005886 (UDP-glucose 4-epimerase GalE), IPR025308 (UDP-glucose 4-epimerase C-terminal domain)	GO:0003824 (catalytic activity), GO:0003978 (UDP-glucose 4-epimerase activity), GO:0006012 (galactose metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf06184g00008.1	AT3G56760.1	****	Protein kinase superfamily protein LENGTH=577	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf25930g00002.1	gb|AFV70821.1|	*-*-	tetratricopeptide repeat-like superfamily protein, partial [Arabidopsis halleri]	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01209g07002.1	sp|P69685|PSBD_ANTMA	*-**	Photosystem II D2 protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf39473g00004.1	sp|B2JS88|BETB_BURP8	****	NAD/NADP-dependent betaine aldehyde dehydrogenase	IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf09097g00008.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00786g02015.1	AT3G48660.1	***-	Protein of unknown function (DUF 3339) LENGTH=89	IPR021775 (Protein of unknown function DUF3339)	
Niben101Scf03224g05003.1	sp|Q9XHS0|RS12_HORVU	***-	40S ribosomal protein S12	IPR000530 (Ribosomal protein S12e), IPR029064 (50S ribosomal protein L30e-like)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02840g04003.1			Unknown protein		
Niben101Scf02381g04004.1	ref|WP_027659120.1|	*-*-	alpha/beta hydrolase [Salinispora pacifica]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02798g00025.1	sp|Q0G9W2|PSAA_DAUCA	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf03437g00009.1	ref|NP_001049319.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf04106g03005.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf25928g00012.1	ref|XP_007012032.1|	*-*-	Bromo-adjacent domain-containing protein, putative isoform 4 [Theobroma cacao] gb|EOY29651.1| Bromo-adjacent domain-containing protein, putative isoform 4 [Theobroma cacao]		
Niben101Scf04869g07002.1	sp|Q9H2D1|MFTC_HUMAN	--*-	Mitochondrial folate transporter/carrier	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf02908g06013.1	sp|Q9BWH6|RPAP1_HUMAN	*-*-	RNA polymerase II-associated protein 1	IPR013929 (RNA polymerase II-associated protein 1, C-terminal), IPR013930 (RNA polymerase II-associated protein 1, N-terminal), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf17626g00001.1	sp|Q9LJK1|FUT11_ARATH	****	Glycoprotein 3-alpha-L-fucosyltransferase A	IPR001503 (Glycosyl transferase, family 10)	GO:0006486 (protein glycosylation), GO:0008417 (fucosyltransferase activity), GO:0016020 (membrane)
Niben101Scf00116g02001.1			Unknown protein		
Niben101Scf06275g04008.1			Unknown protein		
Niben101Scf06825g04003.1	AT5G50680.1	***-	SUMO activating enzyme 1B LENGTH=320	IPR016040 (NAD(P)-binding domain)	
Niben101Scf07809g00006.1	sp|Q03461|NLTP2_TOBAC	****	Non-specific lipid-transfer protein 2	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf07515g03015.1	AT1G71697.1	*-*-	choline kinase 1 LENGTH=346	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00483g03011.1	sp|Q9C9Y4|FB136_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf25868g00011.1	AT1G49720.2	****	abscisic acid responsive element-binding factor 1 LENGTH=403	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08470g03007.1	sp|P25070|CML24_ARATH	****	Calcium-binding protein CML24	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02538g00006.1	sp|Q10173|NUF2_SCHPO	*-*-	Kinetochore protein nuf2	IPR005549 (Kinetochore protein Nuf2)	GO:0000775 (chromosome, centromeric region), GO:0007067 (mitotic nuclear division)
Niben101Scf13289g02009.1	AT5G20950.1	*-**	Glycosyl hydrolase family protein LENGTH=624	IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09954g00010.1	sp|P56821|EIF3B_TOBAC	****	Eukaryotic translation initiation factor 3 subunit B	IPR011042 (Six-bladed beta-propeller, TolB-like), IPR011400 (Eukaryotic translation initiation factor 3 subunit B), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005852 (eukaryotic translation initiation factor 3 complex), GO:0006413 (translational initiation), GO:0031369 (translation initiation factor binding)
Niben101Scf01998g04004.1	AT2G26180.1	***-	IQ-domain 6 LENGTH=416	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf39220g00001.1	emb|CDX96874.1|	*-*-	BnaA08g24170D [Brassica napus]	IPR008581 (Protein of unknown function DUF863, plant)	
Niben101Scf02482g01016.1	AT5G28080.2	****	Protein kinase superfamily protein LENGTH=492	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02074g02069.1			Unknown protein		
Niben101Scf05411g02017.1	AT5G22220.2	*-**	E2F transcription factor 1 LENGTH=469	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR015633 (E2F Family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005667 (transcription factor complex), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07223g01007.1	sp|Q9SF40|RL4A_ARATH	***-	60S ribosomal protein L4-1	IPR002136 (Ribosomal protein L4/L1e), IPR023574 (Ribosomal protein L4 domain), IPR025755 (60S ribosomal protein L4, C-terminal domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf14115g00001.1	sp|Q501G5|FB250_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf10519g01006.1	sp|Q0WLB5|CLAH2_ARATH	*-**	Clathrin heavy chain 2	IPR016341 (Clathrin, heavy chain)	GO:0005198 (structural molecule activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030130 (clathrin coat of trans-Golgi network vesicle), GO:0030132 (clathrin coat of coated pit)
Niben101Scf03164g03003.1	ref|XP_007019700.1|	--*-	Nitrate transporter, putative [Theobroma cacao] gb|EOY16925.1| Nitrate transporter, putative [Theobroma cacao]		
Niben101Scf01756g02023.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04473g05004.1	AT5G26860.1	***-	lon protease 1 LENGTH=940	IPR027065 (Lon protease), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004176 (ATP-dependent peptidase activity), GO:0004252 (serine-type endopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0030163 (protein catabolic process)
Niben101Scf20887g00001.1	AT2G45340.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=691	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf05438g04003.1	sp|Q8RYM9|LAC2_ORYSJ	***-	Laccase-2	IPR008972 (Cupredoxin)	
Niben101Scf06702g01003.1	sp|A7SL20|RRP36_NEMVE	--*-	Ribosomal RNA processing protein 36 homolog		
Niben101Scf17496g00002.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf12673g01034.1	sp|O49377|VA711_ARATH	****	Vesicle-associated membrane protein 711	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf15156g01002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00324g00004.1	ref|WP_025921648.1|	*-*-	MULTISPECIES: hypothetical protein [Prochlorococcus]	IPR021659 (Protein of unknown function DUF3252)	
Niben101Scf21415g00001.1	AT1G20550.1	***-	O-fucosyltransferase family protein LENGTH=564	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf00966g03009.1	gb|AES64334.2|	***-	F-box protein interaction domain protein [Medicago truncatula]	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015916 (Galactose oxidase, beta-propeller), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf20926g01006.1	sp|Q9JI90|RNF14_MOUSE	--*-	E3 ubiquitin-protein ligase RNF14	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf15645g00005.1	sp|P59015|VPS18_DANRE	***-	Vacuolar protein sorting-associated protein 18 homolog	IPR007810 (Pep3/Vps18/deep orange)	
Niben101Scf03062g02021.1	sp|A7MNF6|LLDD_CROS8	*-*-	L-lactate dehydrogenase	IPR012133 (Alpha-hydroxy acid dehydrogenase, FMN-dependent), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03532g01002.1	AT5G59730.1	****	exocyst subunit exo70 family protein H7 LENGTH=634	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf19757g00015.1	sp|O88574|SAP30_MOUSE	--*-	Histone deacetylase complex subunit SAP30	IPR024145 (Histone deacetylase complex subunit SAP30/SAP30-like), IPR025718 (Histone deacetylase complex subunit SAP30, Sin3 binding domain)	GO:0005515 (protein binding)
Niben101Scf04570g06005.1	sp|Q54Q31|PHB2_DICDI	***-	Prohibitin-2	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf11535g00005.1	sp|Q6NM73|CRR3_ARATH	***-	Cysteine-rich repeat secretory protein 3	IPR002902 (Gnk2-homologous domain)	
Niben101Scf12094g00001.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR017451 (F-box associated interaction domain)	
Niben101Scf07474g00017.1	sp|Q8W234|SEUSS_ARATH	*-*-	Transcriptional corepressor SEUSS	IPR029005 (LIM-domain binding protein/SEUSS)	
Niben101Scf03925g01012.1	AT2G36910.1	*-**	ATP binding cassette subfamily B1 LENGTH=1286	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf03790g00014.1	ref|WP_025880009.1|	*-*-	MULTISPECIES: hypothetical protein [Prochlorococcus]	IPR004401 (Nucleoid-associated protein YbaB)	
Niben101Scf08065g01018.1	AT2G33585.1	*-*-	unknown protein; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=193		
Niben101Scf01509g02019.1	sp|Q4IEV5|REXO4_GIBZE	*-**	RNA exonuclease 4	IPR007087 (Zinc finger, C2H2), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity), GO:0046872 (metal ion binding)
Niben101Scf03738g03022.1	sp|Q9LZN0|ROGF7_ARATH	****	Rop guanine nucleotide exchange factor 7	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf15051g00011.1	ref|WP_008205648.1|	****	protein tyr -tyrosine-phosphatase [Microcystis sp. T1-4]	IPR017867 (Protein-tyrosine phosphatase, low molecular weight), IPR023485 (Phosphotyrosine protein phosphatase I superfamily)	GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf01009g02006.1	emb|CDY63648.1|	***-	BnaC07g51020D [Brassica napus]	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	
Niben101Scf02043g05010.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf07058g05004.1	AT5G19420.2	***-	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain LENGTH=1139	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013591 (Brevis radix (BRX) domain), IPR027988 (Transcription factor  BREVIS RADIX, N-terminal domain)	GO:0046872 (metal ion binding)
Niben101Scf04784g06006.1	AT4G39170.1	*-*-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=614		
Niben101Scf00148g00004.1	AT5G62360.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=203	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf03538g05009.1	AT5G08250.1	*-*-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07527g02014.1	sp|Q9SKT3|SCAM1_ARATH	****	Secretory carrier-associated membrane protein 1	IPR007273 (SCAMP)	GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf01301g03008.1	emb|CDY09785.1|	***-	BnaC09g43760D [Brassica napus]	IPR029338 (Tumour suppressing sub-chromosomal transferable candidate 4)	
Niben101Scf01917g08001.1	AT1G50320.1	***-	thioredoxin X LENGTH=182	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00953g09007.1	emb|CDY42197.1|	***-	BnaA01g25980D [Brassica napus]		
Niben101Scf03472g00005.1	sp|Q8RY17|WAKLI_ARATH	****	Wall-associated receptor kinase-like 22	IPR001881 (EGF-like calcium-binding domain), IPR011009 (Protein kinase-like domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf01888g03016.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf17127g00016.1	sp|P81395|MYB30_ANTMA	*-*-	Myb-related protein 330	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02968g02031.1	AT2G32650.1	***-	RmlC-like cupins superfamily protein LENGTH=139	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf05516g04004.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf01155g01009.1	sp|P46512|CAH1_FLALI	***-	Carbonic anhydrase 1	IPR001765 (Carbonic anhydrase)	GO:0004089 (carbonate dehydratase activity), GO:0008270 (zinc ion binding), GO:0015976 (carbon utilization)
Niben101Ctg14845g00001.1	AT2G29050.1	***-	RHOMBOID-like 1 LENGTH=389	IPR002610 (Peptidase S54, rhomboid)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf02793g11013.1			Unknown protein		
Niben101Scf02191g02011.1	emb|CAC14889.1|	--*-	extensin [Nicotiana sylvestris]	IPR006706 (Extensin domain)	GO:0005199 (structural constituent of cell wall), GO:0009664 (plant-type cell wall organization)
Niben101Scf02761g01001.1	sp|Q05B92|TFE3_BOVIN	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04899g01001.1	sp|Q8LPS6|PPR3_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04040g09016.1	sp|O82013|HSP21_SOLPE	***-	17.3 kDa class II heat shock protein	IPR007055 (BON domain), IPR008978 (HSP20-like chaperone)	
Niben101Scf08653g04017.1	ref|WP_020769012.1|	***-	alpha/beta hydrolase family protein [Lept [Leptospira sp. B5-022]	IPR002471 (Peptidase S9, serine active site), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05634g00001.1	sp|Q9SMP0|NFYC1_ARATH	****	Nuclear transcription factor Y subunit C-1	IPR009072 (Histone-fold), IPR027170 (Transcriptional activator NFYC/HAP5 subunit)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005622 (intracellular), GO:0006355 (regulation of transcription, DNA-templated), GO:0016602 (CCAAT-binding factor complex), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf00811g01003.1	sp|Q8BFV3|DUS4_MOUSE	*-**	Dual specificity protein phosphatase 4	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf00613g04020.1	sp|O80452|AMPD_ARATH	*-**	AMP deaminase	IPR006329 (AMP deaminase)	GO:0003876 (AMP deaminase activity), GO:0009168 (purine ribonucleoside monophosphate biosynthetic process), GO:0019239 (deaminase activity), GO:0032264 (IMP salvage)
Niben101Scf01125g01008.1	ref|WP_017313579.1|	*-*-	ParB domain-containing protein nuclease [Fischerella sp. PCC 9339]	IPR016692 (Sulfiredoxin)	GO:0032542 (sulfiredoxin activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00418g02008.1	sp|Q9FGQ6|EB1C_ARATH	****	Microtubule-associated protein RP/EB family member 1C	IPR001715 (Calponin homology domain), IPR004953 (EB1, C-terminal), IPR027328 (Microtubule-associated protein RP/EB)	GO:0005515 (protein binding), GO:0008017 (microtubule binding)
Niben101Scf01326g11032.1	AT3G28610.1	*-*-	P-loop containing nucleoside triphosphate hydrolases superfamily protein LENGTH=474	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00228g11013.1	AT3G07330.1	***-	Cellulose-synthase-like C6 LENGTH=682	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf04375g07006.1	AT5G17440.1	***-	LUC7 related protein LENGTH=404	IPR004882 (Luc7-related)	GO:0003729 (mRNA binding), GO:0005685 (U1 snRNP), GO:0006376 (mRNA splice site selection)
Niben101Scf08411g00009.1	sp|A0MFL4|LOR17_ARATH	*-*-	Protein LURP-one-related 17	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf03488g02005.1	AT4G13930.1	****	serine hydroxymethyltransferase 4 LENGTH=471	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf07162g04017.1	ref|XP_007044490.1|	-**-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative [Theobroma cacao] gb|EOY00322.1| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative [Theobroma cacao]		
Niben101Scf03077g03021.1	AT3G28740.1	*-*-	Cytochrome P450 superfamily protein LENGTH=509	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf29155g00004.1	ref|XP_002528918.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF33447.1| conserved hypothetical protein [Ricinus communis]	IPR003604 (Zinc finger, U1-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf03038g04009.1	sp|Q9SCX6|RPS4L_ARATH	--*-	Disease resistance protein RPS4		
Niben101Scf04503g01011.1	sp|Q9Y6U7|RN215_HUMAN	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf10638g00005.1			Unknown protein		
Niben101Scf00390g00002.1	sp|Q9M907|PP217_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02423g00006.1	sp|Q9FWX2|NAC7_ARATH	*-*-	NAC domain-containing protein 7	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00305g03006.1	sp|Q8VZA1|LAC11_ARATH	*-*-	Laccase-11	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding)
Niben101Scf03624g03004.1	ref|XP_007011041.1|	*-*-	Zinc finger, CCHC-type-like protein [Theobroma cacao] gb|EOY19851.1| Zinc finger, CCHC-type-like protein [Theobroma cacao]		
Niben101Scf11994g00006.1	sp|Q96518|PER16_ARATH	*-**	Peroxidase 16	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01374g03034.1	sp|O76173|RAB1C_DICDI	***-	Ras-related protein Rab-1C	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf04260g02023.1	sp|Q9SHV1|GLR22_ARATH	*-**	Glutamate receptor 2.2	IPR001320 (Ionotropic glutamate receptor), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf06423g01002.1	sp|Q54YG5|TPPC5_DICDI	***-	Trafficking protein particle complex subunit 5	IPR007194 (Transport protein particle (TRAPP) component), IPR024096 (NO signalling/Golgi transport  ligand-binding domain)	
Niben101Scf05750g03032.1			Unknown protein		
Niben101Scf08544g01021.1	AT5G63200.1	***-	tetratricopeptide repeat (TPR)-containing protein LENGTH=649	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01941g01006.1			Unknown protein		
Niben101Scf02280g02005.1	AT5G16480.1	*-*-	Phosphotyrosine protein phosphatases superfamily protein LENGTH=204	IPR004861 (Protein-tyrosine phosphatase, SIW14-like), IPR029021 (Protein-tyrosine phosphatase-like)	
Niben101Scf04001g06005.1	gb|AES81381.2|	***-	armadillo/beta-catenin-like repeat protein [Medicago truncatula]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04473g11001.1	sp|G5EGA6|DHRS4_CAEEL	****	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02098g02013.1	sp|Q6UNT2|RL5_CUCSA	***-	60S ribosomal protein L5	IPR005484 (Ribosomal protein L18/L5), IPR025607 (Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0008097 (5S rRNA binding)
Niben101Scf01160g00002.1	sp|P27496|CB25_TOBAC	***-	Chlorophyll a-b binding protein 50, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf02136g01014.1	emb|CDY14247.1|	***-	BnaA08g13780D [Brassica napus]		
Niben101Scf12159g05021.1	sp|Q9SV13|SUT31_ARATH	****	Sulfate transporter 3.1	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0009507 (chloroplast), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf15817g01009.1	AT2G36770.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02195g10001.1	gb|AFW62357.1|	--*-	auxin-independent growth promoter [Zea mays]		
Niben101Scf07440g01005.1	emb|CBG76281.1|	--*-	OO_Ba0005L10-OO_Ba0081K17.32 [Oryza officinalis]		
Niben101Scf22252g00001.1	sp|Q6RZZ9|KIF13_DICDI	*-**	Kinesin-related protein 13	IPR001752 (Kinesin motor domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding), GO:0008270 (zinc ion binding)
Niben101Scf06155g01009.1			Unknown protein		
Niben101Scf09401g00007.1	sp|P42821|SODM_CORDI	****	Superoxide dismutase [Mn]	IPR001189 (Manganese/iron superoxide dismutase)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg13109g00003.1	gb|EMT07289.1|	*-*-	Katanin p60 ATPase-containing subunit A-like protein 2 [Aegilops tauschii]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00854g01006.1	dbj|BAO50886.1|	*-**	cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]	IPR003569 (Cytochrome c-type biogenesis protein CcbS)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf07288g05012.1	sp|B5WWZ8|FAO1_LOTJA	*-*-	Long-chain-alcohol oxidase FAO1		
Niben101Scf01949g00019.1	gb|AFO69204.1|	****	ATPase subunit 8 (mitochondrion) [Gossypium hirsutum]	IPR003319 (ATP synthase YMF19-like, N-terminal), IPR009455 (ATP synthase YMF19, uncharacterised, C-terminal)	GO:0005739 (mitochondrion), GO:0016021 (integral component of membrane), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances)
Niben101Scf06708g02013.1	sp|Q00451|PRF1_SOLLC	--*-	36.4 kDa proline-rich protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf11895g01001.1	sp|Q9FLP0|MA651_ARATH	****	65-kDa microtubule-associated protein 1	IPR007145 (Microtubule-associated protein, MAP65/Ase1/PRC1)	GO:0000226 (microtubule cytoskeleton organization), GO:0000910 (cytokinesis), GO:0008017 (microtubule binding)
Niben101Scf07132g00001.1	sp|A4QJZ9|PSBA_ARAHI	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf01634g02009.1	AT5G04010.1	***-	F-box family protein LENGTH=287	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf06823g00011.1	AT4G33905.1	*-**	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein LENGTH=261	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf04114g00006.1			Unknown protein		
Niben101Scf11384g00029.1	ref|XP_002528102.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF34281.1| conserved hypothetical protein [Ricinus communis]	IPR006968 (Root UVB sensitive family)	
Niben101Scf04242g00005.1	emb|CDX95941.1|	*-*-	BnaA07g27900D [Brassica napus]	IPR008581 (Protein of unknown function DUF863, plant)	
Niben101Scf00955g00003.1			Unknown protein		
Niben101Scf05822g04006.1	AT5G01990.1	***-	Auxin efflux carrier family protein LENGTH=431	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf05060g08006.1			Unknown protein		
Niben101Scf10887g00006.1	sp|Q94KT8|COBRA_ARATH	***-	Protein COBRA	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf09716g01001.1	sp|Q9LS46|ALMT9_ARATH	****	Aluminum-activated malate transporter 9	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf07601g00007.1	sp|Q8YJ48|ACSA_BRUME	*-*-	Acetyl-coenzyme A synthetase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01025g04002.1	emb|CDY11222.1|	***-	BnaA03g00580D [Brassica napus]		
Niben101Scf06172g00003.1	sp|Q6P3H7|RBBP4_DANRE	--**	Histone-binding protein RBBP4	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf06669g01001.1			Unknown protein		
Niben101Scf01795g04025.1	sp|Q9SR19|RAF2_ARATH	***-	Rubisco accumulation factor 2, chloroplastic		
Niben101Scf00479g02013.1	AT5G53900.2	***-	Serine/threonine-protein kinase WNK (With No Lysine)-related LENGTH=377	IPR025610 (Transcription factor MYC/MYB N-terminal)	
Niben101Scf01171g01005.1	AT3G04240.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=977	IPR011990 (Tetratricopeptide-like helical domain), IPR029489 (O-GlcNAc transferase, C-terminal)	GO:0005515 (protein binding)
Niben101Scf00905g07001.1	sp|Q9LTW9|FLA14_ARATH	*-*-	Fasciclin-like arabinogalactan protein 14	IPR000782 (FAS1 domain)	
Niben101Scf03141g04014.1	AT1G76310.1	****	CYCLIN B2;4 LENGTH=431	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf04933g01009.1	AT3G26560.1	*-**	ATP-dependent RNA helicase, putative LENGTH=1168	IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004386 (helicase activity)
Niben101Scf02437g07004.1	sp|Q7TUS3|CH10_PROMM	*-*-	10 kDa chaperonin	IPR020818 (Chaperonin Cpn10)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding)
Niben101Scf12969g01017.1	AT1G10530.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=166	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf03138g01013.1	sp|P98012|COX2_BETVU	--*-	Cytochrome c oxidase subunit 2		
Niben101Scf00644g00013.1	sp|Q9QYE6|GOGA5_MOUSE	*-*-	Golgin subfamily A member 5		
Niben101Scf06189g03003.1	gb|KEH16365.1|	*-*-	mitovirus RNA-dependent RNA polymerase [Medicago truncatula]		
Niben101Scf33803g00005.1	sp|P0AAG7|MDLB_ECO57	*-**	Multidrug resistance-like ATP-binding protein MdlB	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf05917g01014.1	sp|Q9FHM4|MA653_ARATH	****	65-kDa microtubule-associated protein 3	IPR007145 (Microtubule-associated protein, MAP65/Ase1/PRC1)	GO:0000226 (microtubule cytoskeleton organization), GO:0000910 (cytokinesis), GO:0008017 (microtubule binding)
Niben101Scf15739g00013.1	sp|P81394|MYB15_ANTMA	*-*-	Myb-related protein 315	IPR009057 (Homeodomain-like)	
Niben101Scf03392g06007.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02132g01012.1	ref|XP_002511522.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF52124.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04156g00010.1	AT5G24314.2	*-*-	plastid transcriptionally active7 LENGTH=169		
Niben101Scf01985g01007.1	AT1G03470.1	***-	Kinase interacting (KIP1-like) family protein LENGTH=269	IPR011684 (KIP1-like)	
Niben101Scf03898g03008.1	sp|O49561|G2OX8_ARATH	*-*-	Gibberellin 2-beta-dioxygenase 8	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf05154g01013.1	emb|CDX92841.1|	*-*-	BnaC07g40990D [Brassica napus]		
Niben101Scf00453g04008.1	AT3G08550.1	***-	elongation defective 1 protein / ELD1 protein LENGTH=533		
Niben101Scf09005g00008.1	sp|P84981|FENR_POPEU	--**	Ferredoxin--NADP reductase, chloroplastic	IPR001433 (Oxidoreductase FAD/NAD(P)-binding), IPR015701 (Ferredoxin--NADP reductase), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf13916g01005.1	sp|B2J058|ATPA_NOSP7	*-**	ATP synthase subunit alpha	IPR004100 (ATPase, F1 complex alpha/beta subunit, N-terminal domain), IPR023366 (ATP synthase subunit alpha-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0015992 (proton transport), GO:0046034 (ATP metabolic process)
Niben101Scf03778g01029.1	sp|Q93062|RBPMS_HUMAN	*-**	RNA-binding protein with multiple splicing	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06295g04006.1	sp|Q9M1E8|SEN21_ARATH	****	tRNA-splicing endonuclease subunit Sen2-1	IPR006678 (tRNA intron endonuclease, N-terminal), IPR011856 (tRNA endonuclease-like domain)	GO:0000213 (tRNA-intron endonuclease activity), GO:0003676 (nucleic acid binding), GO:0004518 (nuclease activity), GO:0006388 (tRNA splicing, via endonucleolytic cleavage and ligation)
Niben101Scf00017g00006.1	AT2G30490.1	***-	cinnamate-4-hydroxylase LENGTH=505	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09150g02001.1	sp|P19515|LIP_RHIMI	***-	Lipase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf01170g01014.1	AT3G09090.1	***-	defective in exine formation protein (DEX1) LENGTH=896	IPR013517 (FG-GAP repeat), IPR027295 (Quinonprotein alcohol dehydrogenase-like domain)	
Niben101Scf04033g02007.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf28085g00012.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05954g00013.1	sp|Q9ZT48|ATE1_ARATH	*-**	Arginyl-tRNA--protein transferase 1	IPR007471 (Arginine-tRNA-protein transferase, N-terminal)	GO:0004057 (arginyltransferase activity), GO:0016598 (protein arginylation)
Niben101Scf01051g10006.1	AT4G22770.1	***-	AT hook motif DNA-binding family protein LENGTH=334	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf03325g00003.1	sp|O80434|LAC4_ARATH	*-*-	Laccase-4	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00807g03020.1	ref|XP_003603840.1|	***-	Hippocampus abundant transcript-like protein [Medicago truncatula]	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf04283g09008.1	sp|Q6NMR8|FAF3_ARATH	***-	Protein FANTASTIC FOUR 3	IPR021410 (The fantastic four family)	
Niben101Scf12528g00007.1	sp|O66442|ARGD_AQUAE	*-*-	Acetylornithine aminotransferase	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf05350g00001.1	AT1G33800.1	*-*-	Protein of unknown function (DUF579) LENGTH=297	IPR021148 (Putative polysaccharide biosynthesis protein), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf04444g06002.1	sp|Q94B74|NUDT2_ARATH	****	Nudix hydrolase 2	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf05588g03010.1	sp|Q9QYK7|RNF11_MOUSE	--*-	RING finger protein 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06080g04018.1	sp|F4J5S1|CLU_ARATH	****	Clustered mitochondria protein	IPR007967 (Protein of unknown function DUF727), IPR011990 (Tetratricopeptide-like helical domain), IPR023231 (GSKIP domain), IPR025697 (CLU domain), IPR027523 (Clustered mitochondria protein), IPR028275 (Clustered mitochondria protein, N-terminal)	GO:0005515 (protein binding), GO:0048312 (intracellular distribution of mitochondria)
Niben101Scf23557g00009.1	sp|Q8BVY0|RL1D1_MOUSE	*-*-	Ribosomal L1 domain-containing protein 1	IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	
Niben101Scf17044g01026.1	gb|KEH20821.1|	*-*-	ATP/DNA-binding protein [Medicago truncatula]		
Niben101Scf04881g02001.1	sp|Q5JUK3|KCNT1_HUMAN	*-**	Potassium channel subfamily T member 1	IPR003280 (Two pore domain potassium channel), IPR018247 (EF-Hand 1, calcium-binding site)	GO:0005267 (potassium channel activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf09416g00002.1	gb|AES88501.2|	*-*-	DNA-binding and zinc-finger protein [Medicago truncatula]		
Niben101Scf01655g01015.1	sp|Q7M1E7|PGLR2_CHAOB	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00634g00003.1	sp|A4QLH5|PSBA_LOBMA	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf11564g04001.1			Unknown protein		
Niben101Scf06267g03027.1	ref|NP_001064242.2|	--*-	[Oryza sativa] dbj|BAF26156.2| [Oryza sativa Japonica Group]		
Niben101Scf10968g03018.1			Unknown protein		
Niben101Scf00582g00001.1	tpg|DAA56927.1|	--*-	TPA: hypothetical protein ZEAMMB73_090961 [Zea mays]		
Niben101Scf00254g06011.1	sp|Q9CAJ9|Y1385_ARATH	*-*-	BTB/POZ domain-containing protein	IPR000210 (BTB/POZ-like)	GO:0005515 (protein binding)
Niben101Scf07008g00028.1	AT1G52155.1	***-	unknown protein; Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). LENGTH=319		
Niben101Scf00713g00007.1	AT3G27550.1	*-**	RNA-binding CRS1 / YhbY (CRM) domain protein LENGTH=491	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf01374g00003.1	sp|O04291|ATB14_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-14	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008289 (lipid binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04933g01008.1	AT3G26560.1	****	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001650 (Helicase, C-terminal), IPR012340 (Nucleic acid-binding, OB-fold), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01535g01008.1			Unknown protein		
Niben101Scf00291g02026.1	sp|Q39EE8|NUOD_BURL3	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03978g04010.1	sp|F4IAT2|THOC2_ARATH	*-*-	THO complex subunit 2		
Niben101Scf01395g03009.1	AT5G44360.1	*-**	FAD-binding Berberine family protein LENGTH=532	IPR012951 (Berberine/berberine-like)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05710g03002.1			Unknown protein		
Niben101Scf06775g00038.1	sp|A4SHC0|HLDD_AERS4	--*-	ADP-L-glycero-D-manno-heptose-6-epimerase	IPR016040 (NAD(P)-binding domain)	
Niben101Scf01830g01026.1	sp|Q5ZI43|SPN1_CHICK	*-*-	Snurportin-1		
Niben101Scf05348g03008.1	AT4G22810.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=324	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf00024g01005.1	sp|P13650|DHGB_ACICA	*-*-	Quinoprotein glucose dehydrogenase B	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016901 (oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor), GO:0048038 (quinone binding)
Niben101Scf07399g00015.1			Unknown protein		
Niben101Scf03105g00005.1	ref|XP_003613048.1|	--*-	MscS-Like mechanosensitive ion channel MSCL8 [Medicago truncatula]		
Niben101Scf23568g00001.1			Unknown protein		
Niben101Scf01826g02011.1	sp|Q51676|HEMN_PARDP	****	Oxygen-independent coproporphyrinogen-III oxidase	IPR004559 (Coproporphyrinogen III oxidase, oxygen-independent related), IPR007197 (Radical SAM)	GO:0003824 (catalytic activity), GO:0004109 (coproporphyrinogen oxidase activity), GO:0005737 (cytoplasm), GO:0006779 (porphyrin-containing compound biosynthetic process), GO:0051536 (iron-sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01409g00017.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05617g00001.1	sp|O61125|STK4_DICDI	*-**	Serine/threonine-protein kinase 4 homolog A	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02316g01002.1	AT2G30490.1	***-	cinnamate-4-hydroxylase LENGTH=505	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11750g00006.1	AT3G57810.2	*-*-	Cysteine proteinases superfamily protein LENGTH=317	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf04133g02007.1	AT5G15270.2	*-**	RNA-binding KH domain-containing protein LENGTH=548	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf01269g14003.1	sp|A2YS06|ATG8C_ORYSI	***-	Autophagy-related protein 8C	IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain)	
Niben101Scf00646g03012.1	sp|P79149|PININ_CANFA	*-*-	Pinin	IPR006786 (Pinin/SDK/MemA protein)	
Niben101Scf12987g00006.1	emb|CDY00768.1|	*-*-	BnaC03g37520D [Brassica napus]		
Niben101Scf00176g09009.1	sp|Q5RE31|MAGT1_PONAB	*-*-	Magnesium transporter protein 1	IPR021149 (Oligosaccharyl transferase complex, subunit OST3/OST6)	
Niben101Scf01764g02029.1	AT5G23100.1	***-	Protein of unknown function, DUF617 LENGTH=277	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf10887g00005.1	sp|Q9LH43|RLF27_ARATH	--*-	Protein RALF-like 27		
Niben101Scf05060g08005.1	AT5G15270.2	****	RNA-binding KH domain-containing protein LENGTH=548	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf08580g00015.1	sp|Q9SF32|IQD1_ARATH	***-	Protein IQ-DOMAIN 1	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf06473g00021.1	gb|AEW48209.1|	*-*-	disease resistance protein RGH5 [Solanum huancabambense]		
Niben101Scf03736g01008.1	sp|O08550|KMT2B_MOUSE	--*-	Histone-lysine N-methyltransferase 2B	IPR003616 (Post-SET domain)	
Niben101Scf01818g08022.1	sp|Q41638|XTHA_PHAAN	****	Xyloglucan endotransglucosylase/hydrolase protein A	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf03419g10007.1	sp|Q6AWY3|GRF6_ORYSJ	***-	Growth-regulating factor 6	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf09225g02001.1	gb|ABA95998.1|	--*-	GRF zinc finger family protein [Oryza sativa Japonica Group] gb|EAZ19875.1| hypothetical protein OsJ_35459 [Oryza sativa Japonica Group]		
Niben101Scf06388g02016.1	ref|XP_010087329.1|	****	WD repeat and HMG-box DNA-binding protein 1 [Morus notabilis] gb|EXB28903.1| WD repeat and HMG-box DNA-binding protein 1 [Morus notabilis]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR022100 (Protein of unknown function DUF3639)	GO:0005515 (protein binding)
Niben101Scf08590g01011.1	AT1G79600.1	****	Protein kinase superfamily protein LENGTH=711	IPR009330 (Lipopolysaccharide core heptose(II) kinase), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0009244 (lipopolysaccharide core region biosynthetic process), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00069g12011.1	sp|Q6EP49|MAD27_ORYSJ	****	MADS-box transcription factor 27	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00219g06003.1	sp|Q2VED0|NU4C_SOLTU	--*-	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic		
Niben101Ctg15352g00002.1	ref|XP_007033685.1|	*-*-	Nonsense-mediated mRNA decay protein 2 isoform 1 [Theobroma cacao] gb|EOY04611.1| Nonsense-mediated mRNA decay protein 2 isoform 1 [Theobroma cacao]		
Niben101Scf08711g00025.1	AT2G46040.1	*-**	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=562	IPR000949 (ELM2 domain), IPR001606 (ARID DNA-binding domain)	GO:0003677 (DNA binding)
Niben101Scf07786g00006.1	sp|B1XQF6|DNAJ_SYNP2	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf01782g04001.1	AT3G09100.2	****	mRNA capping enzyme family protein LENGTH=672	IPR001339 (mRNA capping enzyme), IPR013846 (mRNA capping enzyme, C-terminal), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004484 (mRNA guanylyltransferase activity), GO:0004725 (protein tyrosine phosphatase activity), GO:0006370 (7-methylguanosine mRNA capping), GO:0006397 (mRNA processing), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf00288g07017.1	sp|Q1HDT2|CHX24_ARATH	--**	Cation/H(+) antiporter 24	IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf02119g00001.1	sp|Q84T94|P2C35_ORYSJ	*-*-	Protein phosphatase 2C 35	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf10650g01006.1	sp|Q4V886|PAF1_RAT	*-*-	RNA polymerase II-associated factor 1 homolog	IPR007133 (RNA polymerase II-associated, Paf1)	
Niben101Scf17009g00023.1	AT5G47730.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=341	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf00789g00007.1	sp|Q9SLP9|CAS1_LUFAE	*-*-	Cycloartenol synthase	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0003824 (catalytic activity), GO:0016866 (intramolecular transferase activity)
Niben101Scf03277g02002.1	sp|Q72MG4|IPYR_LEPIC	*-**	Inorganic pyrophosphatase	IPR008162 (Inorganic pyrophosphatase)	GO:0000287 (magnesium ion binding), GO:0004427 (inorganic diphosphatase activity), GO:0005737 (cytoplasm), GO:0006796 (phosphate-containing compound metabolic process)
Niben101Scf02210g05008.1	sp|Q9SFB8|PI5K6_ARATH	****	Phosphatidylinositol 4-phosphate 5-kinase 6	IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf11994g00007.1	gb|AES67101.2|	*-*-	OTU-like cysteine protease [Medicago truncatula]		
Niben101Scf00863g02001.1	sp|B0RDY9|IF2_CLAMS	*-*-	Translation initiation factor IF-2	IPR000795 (Elongation factor, GTP-binding domain), IPR005225 (Small GTP-binding protein domain), IPR009000 (Translation protein, beta-barrel domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf06180g00015.1	sp|Q9T065|1A18_ARATH	***-	1-aminocyclopropane-1-carboxylate synthase 8	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf04731g03002.1	sp|Q39117|TGT2_ARATH	*-*-	Trihelix transcription factor GT-2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04792g00001.1	AT5G44150.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). LENGTH=355		
Niben101Scf05229g02004.1	AT1G69690.1	*-*-	TCP family transcription factor LENGTH=325	IPR005333 (Transcription factor, TCP)	
Niben101Scf31403g00002.1			Unknown protein		
Niben101Scf19135g00002.1	emb|CDX77961.1|	***-	BnaA09g31560D [Brassica napus]		
Niben101Scf01062g04003.1	AT2G24220.1	***-	purine permease 5 LENGTH=361	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf02513g08007.1	sp|P13869|CB12_PETHY	***-	Chlorophyll a-b binding protein, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf03214g00001.1	gb|AAM47025.1|	--*-	nam-like protein 1 [Petunia x hybrida]		
Niben101Scf10015g00010.1	AT5G59290.2	***-	UDP-glucuronic acid decarboxylase 3 LENGTH=357	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf02749g00015.1	AT3G14060.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=125		
Niben101Scf04614g09003.1	sp|Q9M2Y4|PP276_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01369g05024.1	AT1G20810.1	***-	FKBP-like peptidyl-prolyl cis-trans isomerase family protein LENGTH=232	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf03488g07006.1	AT1G76270.1	***-	O-fucosyltransferase family protein LENGTH=572	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf00725g03014.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07035g01009.1	gb|AAX38236.1|	****	strictosidine synthase family protein [Brassica napus]	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf06769g04022.1	sp|Q6V9I6|HDT1_SOLCH	***-	Histone deacetylase HDT1	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf04231g01041.1	sp|Q9LS46|ALMT9_ARATH	****	Aluminum-activated malate transporter 9	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf04878g00030.1	AT5G10270.1	*-**	cyclin-dependent kinase C;1 LENGTH=505	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10927g00018.1	ref|NP_001176100.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAH94828.1| [Oryza sativa Japonica Group]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf10735g00016.1	sp|P43186|BEV1M_BETPN	***-	Major pollen allergen Bet v 1-M/N	IPR000916 (Bet v I domain), IPR023393 (START-like domain), IPR024949 (Bet v I type allergen)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf03427g10003.1	AT4G27570.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=453	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01832g00018.1	sp|Q9SUY0|FB244_ARATH	*-*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf09109g01012.1	AT3G24880.1	****	Helicase/SANT-associated, DNA binding protein LENGTH=1957	IPR009057 (Homeodomain-like), IPR014012 (Helicase/SANT-associated, DNA binding)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf32044g00003.1	sp|Q42699|METE_CATRO	--*-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase		
Niben101Scf00404g01016.1	gb|AES63728.2|	***-	lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf26748g00005.1	gb|AEB37532.1|	--*-	TB1-like TCP family transcription factor [Helianthus annuus]	IPR005333 (Transcription factor, TCP)	
Niben101Scf05519g02018.1	AT1G55580.1	****	GRAS family transcription factor LENGTH=445	IPR005202 (Transcription factor GRAS), IPR030008 (Scarecrow-like protein 3)	GO:0000989 (transcription factor binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf00614g00027.1	sp|O23547|EXLB1_ARATH	***-	Expansin-like B1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region)
Niben101Scf22899g00004.1	sp|B4R8L8|RL4_PHEZH	***-	50S ribosomal protein L4	IPR002136 (Ribosomal protein L4/L1e), IPR023574 (Ribosomal protein L4 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09044g00010.1	ref|WP_002779966.1|	****	Riboflavin bi ribD (Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase ; 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Microcystis aeruginosa PCC 9806]	IPR004794 (Riboflavin biosynthesis protein RibD), IPR012816 (Conserved hypothetical protein CHP02464), IPR024072 (Dihydrofolate reductase-like domain)	GO:0003824 (catalytic activity), GO:0008270 (zinc ion binding), GO:0008703 (5-amino-6-(5-phosphoribosylamino)uracil reductase activity), GO:0008835 (diaminohydroxyphosphoribosylaminopyrimidine deaminase activity), GO:0009231 (riboflavin biosynthetic process), GO:0016787 (hydrolase activity), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf39488g00001.1	sp|B4R8L7|RL3_PHEZH	***-	50S ribosomal protein L3	IPR000597 (Ribosomal protein L3), IPR009000 (Translation protein, beta-barrel domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00415g07008.1	gb|AAU90304.1|	--*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf06026g01007.1	sp|Q9S7H4|CM2_ARATH	****	Chorismate mutase 2	IPR008238 (Chorismate mutase, AroQ class, eukaryotic type)	GO:0004106 (chorismate mutase activity), GO:0009073 (aromatic amino acid family biosynthetic process), GO:0046417 (chorismate metabolic process)
Niben101Scf04290g04017.1			Unknown protein		
Niben101Scf01041g01009.1	AT2G45180.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=134	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf08975g02017.1	AT3G51870.1	***-	Mitochondrial substrate carrier family protein LENGTH=381	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf01888g03015.1	ref|XP_007019178.1|	***-	Keratinocyte-associated protein 2 isoform 1 [Theobroma cacao] gb|EOY16403.1| Keratinocyte-associated protein 2 isoform 1 [Theobroma cacao]	IPR018614 (Uncharacterised protein family KRTCAP2)	
Niben101Scf08445g00009.1	AT5G66600.4	*-*-	Protein of unknown function, DUF547 LENGTH=629	IPR006869 (Domain of unknown function DUF547), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0035556 (intracellular signal transduction)
Niben101Scf00854g09075.1	sp|Q3T4C0|COX2_SMICU	*-**	Cytochrome c oxidase subunit 2	IPR008972 (Cupredoxin)	GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0016020 (membrane)
Niben101Scf02350g02011.1	gb|ABS79582.1|	***-	At3g32930-like protein [Arabidopsis lyrata subsp. petraea]		
Niben101Scf02450g02008.1	sp|Q8LEQ0|RLA13_ARATH	*-*-	60S acidic ribosomal protein P1-3	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf03035g00018.1	sp|Q9LVY1|TAT_ARATH	*-*-	Tyrosine aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf17243g01009.1	sp|Q8C5L7|RBM34_MOUSE	--**	RNA-binding protein 34	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03858g01001.1	sp|Q84LH3|WEX_ARATH	--*-	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf04021g08007.1	sp|Q8DMM5|RL16_THEEB	*-*-	50S ribosomal protein L16	IPR000114 (Ribosomal protein L16), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf01922g08015.1	sp|P80490|FRHB_METBF	***-	Coenzyme F420 hydrogenase subunit beta	IPR007516 (Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal), IPR007525 (Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal), IPR011254 (Prismane-like)	GO:0003824 (catalytic activity), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01579g00001.1	AT5G59290.2	***-	UDP-glucuronic acid decarboxylase 3 LENGTH=357	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf11215g00001.1			Unknown protein		
Niben101Scf00757g00001.1	AT5G61030.1	*-**	glycine-rich RNA-binding protein 3 LENGTH=309	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03330g01003.1	AT5G20740.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=205	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf02156g04001.1	AT2G38970.1	****	Zinc finger (C3HC4-type RING finger) family protein LENGTH=692	IPR002035 (von Willebrand factor, type A), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05220g00005.1	sp|P21616|AVP_VIGRR	****	Pyrophosphate-energized vacuolar membrane proton pump	IPR004131 (Pyrophosphate-energised proton pump)	GO:0004427 (inorganic diphosphatase activity), GO:0009678 (hydrogen-translocating pyrophosphatase activity), GO:0015992 (proton transport), GO:0016020 (membrane)
Niben101Scf18898g00005.1	emb|CDY01816.1|	***-	BnaC06g28560D [Brassica napus]	IPR008011 (Complex 1 LYR protein)	
Niben101Scf02744g00013.1	sp|Q6P7N1|MAK16_XENTR	*-*-	Protein MAK16 homolog	IPR006958 (Mak16 protein), IPR029004 (Ribosomal L28e/Mak16)	
Niben101Scf01448g00003.1	sp|Q8L8Q3|LBD25_ARATH	***-	LOB domain-containing protein 25	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf13863g00010.1	sp|Q0E1D7|FLP3_ORYSJ	***-	Flowering-promoting factor 1-like protein 3		
Niben101Scf09321g01008.1	sp|Q67YC0|PPSP1_ARATH	***-	Inorganic pyrophosphatase 1	IPR006383 (HAD-superfamily hydrolase, subfamily IB, PSPase-like), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016791 (phosphatase activity)
Niben101Scf09004g00018.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00318g03014.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04890g00002.1	sp|Q3LFU0|CP1A1_BALAC	--*-	Cytochrome P450 1A1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01980g05001.1	sp|O95801|TTC4_HUMAN	*-*-	Tetratricopeptide repeat protein 4	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03321g03001.1	gb|EJT97597.1|	****	S-adenosyl-L-methionine-dependent methyltransferase [Dacryopinax sp. DJM-731 SS1]	IPR008854 (TPMT family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity)
Niben101Scf04995g18005.1			Unknown protein		
Niben101Scf03079g00002.1	AT2G39190.2	****	Protein kinase superfamily protein LENGTH=814	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03208g07010.1	sp|Q9FKB5|KRP3_ARATH	****	Cyclin-dependent kinase inhibitor 3	IPR003175 (Cyclin-dependent kinase inhibitor)	GO:0004861 (cyclin-dependent protein serine/threonine kinase inhibitor activity), GO:0005634 (nucleus), GO:0007050 (cell cycle arrest)
Niben101Scf00032g02001.1	emb|CBM56257.1|	*-**	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02508g06011.1	AT2G04220.1	***-	Plant protein of unknown function (DUF868) LENGTH=307	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf09924g02001.1			Unknown protein		
Niben101Scf06898g03015.1	sp|Q5BQN5|WAP_SOLLC	***-	WPP domain-associated protein		
Niben101Scf00206g01032.1	sp|Q9UX92|RS8_SULSO	***-	30S ribosomal protein S8	IPR000630 (Ribosomal protein S8)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03141g08010.1	gb|AAF79620.1|AC027665_21	*-*-	F5M15.20 [Arabidopsis thaliana]		
Niben101Scf09360g02002.1			Unknown protein	IPR008906 (HAT dimerisation domain, C-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf02668g02004.1	AT3G08550.1	***-	elongation defective 1 protein / ELD1 protein LENGTH=533		
Niben101Scf07908g00012.1			Unknown protein		
Niben101Scf05326g00012.1	ref|NP_001048145.1|	***-	product [Oryza sativa Japonica Group]	IPR008976 (Lipase/lipooxygenase, PLAT/LH2)	GO:0005515 (protein binding)
Niben101Scf02330g00005.1	AT5G18970.1	***-	AWPM-19-like family protein LENGTH=171	IPR008390 (AWPM-19-like)	
Niben101Scf01492g01005.1	sp|Q03461|NLTP2_TOBAC	****	Non-specific lipid-transfer protein 2	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf07813g01007.1	AT3G05940.1	*-*-	Protein of unknown function (DUF300) LENGTH=422		
Niben101Scf01686g03001.1	emb|CDY24374.1|	***-	BnaA07g02990D [Brassica napus]		
Niben101Scf07109g04004.1	sp|P50699|TLPH_ARATH	*-*-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf20926g01005.1	emb|CDY06891.1|	***-	BnaA04g24240D [Brassica napus]		
Niben101Scf12317g00001.1	sp|O70481|UBR1_MOUSE	*-*-	E3 ubiquitin-protein ligase UBR1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf02085g23015.1	AT2G38330.1	***-	MATE efflux family protein LENGTH=521	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf04657g07002.1			Unknown protein		
Niben101Scf00496g02009.1	sp|A0JPZ8|AP2L3_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf13856g00017.1	gb|AES58928.2|	--*-	F-box/RNI/FBD-like domain protein [Medicago truncatula]		
Niben101Scf06326g00009.1	emb|CDY39863.1|	***-	BnaC02g42550D [Brassica napus]	IPR008502 (Prolamin-like domain)	
Niben101Scf00341g02005.1	AT5G55660.1	*-*-	DEK domain-containing chromatin associated protein LENGTH=778	IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding)
Niben101Scf00113g04003.1	sp|Q6Z3U3|Y7797_ORYSJ	--*-	B3 domain-containing protein	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf03225g00012.1	sp|Q5ZJQ8|UBAC2_CHICK	***-	Ubiquitin-associated domain-containing protein 2	IPR007599 (Derlin), IPR009060 (UBA-like), IPR022764 (Peptidase S54, rhomboid domain)	GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0016021 (integral component of membrane)
Niben101Scf00705g04009.1	sp|P19244|HSP41_PEA	***-	22.7 kDa class IV heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf04325g00005.1	AT1G08470.1	****	strictosidine synthase-like 3 LENGTH=390	IPR004141 (Strictosidine synthase)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf05029g00002.1	sp|Q9FJU9|E1313_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 13	IPR012946 (X8 domain)	
Niben101Ctg16374g00003.1	sp|P27496|CB25_TOBAC	***-	Chlorophyll a-b binding protein 50, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf06186g07020.1	AT5G02370.1	****	ATP binding microtubule motor family protein LENGTH=628	IPR001752 (Kinesin motor domain), IPR010994 (RuvA domain 2-like), IPR026986 (Kinesin-like protein KIF22  (Kid)), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf01478g08022.1	emb|CDY12653.1|	*-*-	BnaA02g13210D [Brassica napus]		
Niben101Scf02816g03001.1	ref|NP_564491.1|	*-*-	DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana]	IPR007592 (Protein of unknown function DUF573)	
Niben101Scf06190g02004.1	ref|WP_032913581.1|	--*-	adenylate cyclase [Streptococcus sanguinis]	IPR023577 (CYTH-like domain)	
Niben101Scf03591g00004.1	gb|ABO41450.1|	****	NADH dehydrogenase subunit 6 [Vantanea guianensis]	IPR001457 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 6)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01292g01007.1	ref|WP_026731445.1|	****	GCN5 family acetyltransferase [Fischerella sp. PCC 9605]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf03357g00035.1	sp|P93732|PIP_ARATH	*-*-	Proline iminopeptidase	IPR002410 (Peptidase S33), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004177 (aminopeptidase activity), GO:0005737 (cytoplasm), GO:0006508 (proteolysis), GO:0008233 (peptidase activity)
Niben101Scf07223g01008.1	ref|XP_002525193.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF37159.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01550g00008.1	sp|P40934|CYB5_BRAOB	***-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf05615g03002.1	sp|Q9SFC7|FB135_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf14262g01005.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR015757 (Calcineurin B protein)	GO:0005509 (calcium ion binding)
Niben101Scf03407g01010.1	AT4G09670.1	****	Oxidoreductase family protein LENGTH=362	IPR016040 (NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity)
Niben101Scf06482g05006.1			Unknown protein		
Niben101Scf06275g04007.1	sp|Q9C7A2|Y3236_ARATH	*-*-	Ankyrin repeat-containing protein	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf03341g01002.1	emb|CDX93551.1|	***-	BnaA06g04970D [Brassica napus]		
Niben101Scf06825g04004.1	ref|XP_002511155.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF51757.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02320g00021.1	AT4G32700.2	*-**	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding LENGTH=2154	IPR001650 (Helicase, C-terminal), IPR004179 (Sec63 domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf07311g01004.1	sp|Q9C912|R35A3_ARATH	***-	60S ribosomal protein L35a-3	IPR001780 (Ribosomal protein L35A), IPR009000 (Translation protein, beta-barrel domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf13518g00013.1	sp|Q9SZ42|FAD4_ARATH	***-	Fatty acid desaturase 4, chloroplastic	IPR019547 (B-domain containing protein Kua)	
Niben101Scf03096g01009.1			Unknown protein		
Niben101Scf00849g01009.1	sp|Q8NEZ4|KMT2C_HUMAN	*-**	Histone-lysine N-methyltransferase 2C	IPR001214 (SET domain), IPR007728 (Pre-SET domain), IPR018848 (WIYLD domain), IPR025776 (Histone-lysine N-methyltransferase SUVR1/2/4)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation)
Niben101Scf04869g07001.1	sp|Q9LXV5|NFYA1_ARATH	****	Nuclear transcription factor Y subunit A-1	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0016602 (CCAAT-binding factor complex)
Niben101Scf07809g00005.1	sp|Q03461|NLTP2_TOBAC	****	Non-specific lipid-transfer protein 2	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf07267g02006.1	AT2G40490.1	****	Uroporphyrinogen decarboxylase LENGTH=394	IPR000257 (Uroporphyrinogen decarboxylase (URO-D))	GO:0004853 (uroporphyrinogen decarboxylase activity), GO:0006779 (porphyrin-containing compound biosynthetic process)
Niben101Scf03766g08005.1			Unknown protein	IPR013177 (Domain of unknown function DUF1713, mitochondria)	
Niben101Scf00870g03003.1	emb|CDY24065.1|	*-*-	BnaA06g00630D [Brassica napus]	IPR007650 (Zf-FLZ domain)	
Niben101Scf00234g01002.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07027g06001.1	AT3G51470.1	*-*-	Protein phosphatase 2C family protein LENGTH=361	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf03374g01007.1	sp|Q8VYK7|ATG8F_ARATH	***-	Autophagy-related protein 8f	IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain)	
Niben101Scf01785g08006.1	sp|Q9FFR9|CHX18_ARATH	****	Cation/H(+) antiporter 18	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf10205g00021.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf02043g06009.1	sp|Q9JI10|STK3_MOUSE	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00905g02007.1	sp|Q9SYK9|U74E2_ARATH	--*-	UDP-glycosyltransferase 74E2		
Niben101Scf01177g00011.1			Unknown protein		
Niben101Scf03939g03007.1	gb|KEH22373.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf04375g08027.1	AT5G23520.1	***-	smr (Small MutS Related) domain-containing protein LENGTH=435	IPR002625 (Smr protein/MutS2 C-terminal), IPR013899 (Domain of unknown function DUF1771)	
Niben101Scf00439g10054.1	sp|O64628|TXND9_ARATH	***-	Thioredoxin domain-containing protein 9 homolog	IPR012336 (Thioredoxin-like fold)	
Niben101Scf15543g01021.1	sp|Q50228|FMDA_METME	***-	Formamidase	IPR004304 (Acetamidase/Formamidase)	GO:0016811 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides)
Niben101Scf07599g00015.1			Unknown protein		
Niben101Scf07429g02003.1	emb|CDY24256.1|	***-	BnaC03g42290D [Brassica napus]		
Niben101Scf01054g13006.1	sp|Q9XHS0|RS12_HORVU	***-	40S ribosomal protein S12	IPR000530 (Ribosomal protein S12e), IPR029064 (50S ribosomal protein L30e-like)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00077g08012.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf11379g00013.1	sp|Q1QS47|UBIE_NITHX	****	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	IPR004033 (UbiE/COQ5 methyltransferase), IPR023576 (UbiE/COQ5 methyltransferase, conserved site), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf03927g00002.1	sp|Q65VS6|SECA_MANSM	--*-	Protein translocase subunit SecA		
Niben101Scf03307g01015.1	sp|Q41142|PLDA1_RICCO	****	Phospholipase D alpha 1	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0004630 (phospholipase D activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0046470 (phosphatidylcholine metabolic process)
Niben101Scf26315g00004.1	gb|AAO66526.1|	***-	expressed protein [Oryza sativa Japonica Group] gb|ABF99955.1| expressed protein [Oryza sativa Japonica Group] gb|EAY92632.1| hypothetical protein OsJ_13412 [Oryza sativa Japonica Group]	IPR009724 (Protein of unknown function DUF1301, TMEM70)	
Niben101Scf06203g00001.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf05063g00002.1	sp|P35131|UBC8_ARATH	*-*-	Ubiquitin-conjugating enzyme E2 8	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf03648g01007.1	sp|F1SVH9|FPOM_METMA	--*-	F(420)H(2) dehydrogenase subunit M		
Niben101Scf10919g01034.1	AT4G38900.1	****	Basic-leucine zipper (bZIP) transcription factor family protein LENGTH=553	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03761g00013.1	AT3G61850.4	****	Dof-type zinc finger DNA-binding family protein LENGTH=324	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04860g00002.1	ref|WP_020770041.1|	***-	sodium Bile acid symporter family protein [Lept [Leptospira sp. B5-022]	IPR002657 (Bile acid:sodium symporter/arsenical resistance protein  Acr3)	GO:0016020 (membrane)
Niben101Scf03817g11008.1	sp|Q07262|1A1C_TOBAC	*-*-	1-aminocyclopropane-1-carboxylate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	
Niben101Scf00229g04004.1	AT2G29050.1	*-*-	RHOMBOID-like 1 LENGTH=389	IPR002610 (Peptidase S54, rhomboid)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf03365g05021.1	AT5G44030.1	****	cellulose synthase A4 LENGTH=1049	IPR005150 (Cellulose synthase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf01377g01001.1	AT5G11730.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=386	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf00870g03002.1	AT1G72330.3	***-	alanine aminotransferase 2 LENGTH=553	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf08172g00001.1	sp|A2YR02|ROC7_ORYSI	*-*-	Homeobox-leucine zipper protein ROC7	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf08651g04004.1	sp|Q8RYC8|ARFS_ARATH	*-**	Auxin response factor 19	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf02464g00002.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00271g06003.1	sp|Q9SA78|COPE1_ARATH	***-	Coatomer subunit epsilon-1	IPR006822 (Coatomer, epsilon subunit)	GO:0005198 (structural molecule activity), GO:0005515 (protein binding), GO:0006890 (retrograde vesicle-mediated transport, Golgi to ER)
Niben101Scf14387g00001.1			Unknown protein		
Niben101Scf02537g07001.1	sp|B0TYF3|DNAJ_FRAP2	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf04910g01012.1	sp|Q9LWM4|CIPK5_ORYSJ	*-*-	CBL-interacting protein kinase 5	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08020g01012.1	sp|Q61171|PRDX2_MOUSE	****	Peroxiredoxin-2	IPR012336 (Thioredoxin-like fold)	GO:0016209 (antioxidant activity), GO:0016491 (oxidoreductase activity), GO:0051920 (peroxiredoxin activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02531g01022.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf01658g00008.1	AT1G75460.1	*-*-	ATP-dependent protease La (LON) domain protein LENGTH=278		
Niben101Scf07355g02005.1	gb|KEH34326.1|	--*-	protein phosphatase 2C-like protein [Medicago truncatula]		
Niben101Scf02827g05011.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf06133g00014.1	sp|A6NHJ4|ZN860_HUMAN	--*-	Zinc finger protein 860	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR022755 (Zinc finger, double-stranded RNA binding)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf18822g00001.1	gb|KEH27668.1|	*-*-	neutral alpha-glucosidase [Medicago truncatula]		
Niben101Scf00439g10056.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00193g06003.1	gb|AAT40540.1|	*-*-	kelch repeat-containing F-box family protein, putative [Solanum demissum]		
Niben101Scf00786g02016.1	AT5G40970.1	***-	Protein of unknown function (DUF 3339) LENGTH=69	IPR021775 (Protein of unknown function DUF3339)	
Niben101Scf02755g05002.1	sp|Q27995|NOS2_BOVIN	--*-	Nitric oxide synthase, inducible		
Niben101Scf00847g00005.1	sp|Q9FME8|OPT4_ARATH	***-	Oligopeptide transporter 4	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf03871g04004.1	sp|A2Z6W1|SPX3_ORYSI	*-*-	SPX domain-containing protein 3	IPR004331 (SPX, N-terminal)	
Niben101Scf00321g02008.1			Unknown protein		
Niben101Scf01101g05004.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf39473g00003.1	sp|Q67A25|NCS_THLFG	*-*-	S-norcoclaurine synthase	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf04570g06004.1	sp|Q06967|14336_ORYSJ	***-	14-3-3-like protein GF14-F	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf03790g00015.1	AT5G48930.1	****	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase LENGTH=433	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01269g04014.1	sp|Q4VXU2|PAP1L_HUMAN	*-**	Polyadenylate-binding protein 1-like	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03437g00008.1	sp|O24145|4CL1_TOBAC	***-	4-coumarate--CoA ligase 1	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04078g00006.1	sp|Q8R344|CCD12_MOUSE	*-*-	Coiled-coil domain-containing protein 12	IPR013169 (mRNA splicing factor, Cwf18)	
Niben101Scf10994g00004.1	sp|P0C8Q7|PP369_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf14164g00009.1	ref|XP_003602207.1|	****	Poly(A) RNA polymerase cid14 [Medicago truncatula] gb|AES72458.1| nucleotidyltransferase [Medicago truncatula]	IPR002934 (Nucleotidyl transferase domain)	GO:0016779 (nucleotidyltransferase activity)
Niben101Scf12686g02002.1	sp|B4TMG8|AES_SALSV	--*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf10910g01018.1	AT5G45610.1	***-	protein dimerizations LENGTH=646		
Niben101Scf07515g03016.1	emb|CDX75234.1|	*-*-	BnaA01g04680D [Brassica napus]		
Niben101Scf03738g03023.1	AT3G53950.1	*-*-	glyoxal oxidase-related protein LENGTH=545	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf05035g02005.1	sp|Q9SUD8|PP340_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf10776g00005.1			Unknown protein		
Niben101Scf16592g00005.1	sp|P81395|MYB30_ANTMA	*-*-	Myb-related protein 330	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06279g00004.1	sp|A7Z3X4|MTNW_BACA2	--*-	2,3-diketo-5-methylthiopentyl-1-phosphate enolase	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf13429g01005.1	sp|Q05085|PTR7_ARATH	***-	Protein NRT1/ PTR FAMILY 6.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf03842g05012.1	sp|C7N1I1|FTSH_SLAHD	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR005936 (Peptidase, FtsH), IPR011546 (Peptidase M41, FtsH extracellular), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf00307g04006.1			Unknown protein	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf09954g00011.1	sp|Q6DFN1|NDUF3_XENTR	***-	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3	IPR007523 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3)	
Niben101Scf02039g01018.1	sp|Q61687|ATRX_MOUSE	*-*-	Transcriptional regulator ATRX		
Niben101Scf01687g11002.1	sp|Q54PN7|PRS6A_DICDI	***-	26S protease regulatory subunit 6A homolog	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf05929g05003.1	sp|B0KAH5|LEUC_THEP3	***-	3-isopropylmalate dehydratase large subunit	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf01170g01013.1	AT2G38060.1	***-	phosphate transporter 4;2 LENGTH=512	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01756g02024.1	ref|XP_003597012.1|	--*-	TdcA1-ORF2 protein [Medicago truncatula]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf03164g03002.1	sp|Q8LPL2|PTR32_ARATH	***-	Protein NRT1/ PTR FAMILY 1.1	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Ctg15158g00001.1	ref|XP_002525619.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF36737.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf14115g00002.1	sp|Q84W80|FBL42_ARATH	***-	F-box/LRR-repeat protein	IPR006566 (FBD domain)	
Niben101Scf00805g00003.1	AT5G20810.2	***-	SAUR-like auxin-responsive protein family LENGTH=190	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02074g02068.1	sp|C0RF52|ATPA_BRUMB	****	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf00168g06003.1	sp|Q503V0|CHMP6_DANRE	***-	Charged multivesicular body protein 6	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf05621g09002.1	sp|P10708|CB12_SOLLC	***-	Chlorophyll a-b binding protein 7, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf02952g06012.1	sp|Q9LUE2|TPS18_ARATH	*-**	Terpenoid synthase 18	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf12673g01033.1	sp|Q84WU2|UBP13_ARATH	*-*-	Ubiquitin carboxyl-terminal hydrolase 13	IPR008974 (TRAF-like)	GO:0005515 (protein binding)
Niben101Scf10333g00020.1	sp|Q08DI6|RNF11_BOVIN	--*-	RING finger protein 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07790g01019.1	sp|P52421|PUR2_VIGUN	****	Phosphoribosylamine--glycine ligase	IPR000115 (Phosphoribosylglycinamide synthetase), IPR016185 (Pre-ATP-grasp domain)	GO:0003824 (catalytic activity), GO:0004637 (phosphoribosylamine-glycine ligase activity), GO:0005524 (ATP binding), GO:0009113 (purine nucleobase biosynthetic process), GO:0046872 (metal ion binding)
Niben101Scf02289g07008.1	emb|CDY42438.1|	*-*-	BnaC02g22700D [Brassica napus]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf17368g00003.1	ref|XP_002534041.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF28345.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05730g00011.1	AT1G65790.1	*-**	receptor kinase 1 LENGTH=843	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07402g02013.1	AT5G37478.1	***-	TPX2 (targeting protein for Xklp2) protein family LENGTH=178	IPR009675 (TPX2), IPR027329 (TPX2, C-terminal domain)	GO:0005819 (spindle), GO:0005874 (microtubule), GO:0007067 (mitotic nuclear division)
Niben101Scf20037g00011.1	sp|P0C8Q7|PP369_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05201g02004.1	sp|Q9JJC8|NIPA2_MOUSE	****	Magnesium transporter NIPA2	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf01824g00002.1	sp|Q25AG5|ERG3_ORYSI	***-	Elicitor-responsive protein 3	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf06910g04004.1	AT5G05990.1	****	Mitochondrial glycoprotein family protein LENGTH=259	IPR003428 (Mitochondrial glycoprotein)	GO:0005759 (mitochondrial matrix)
Niben101Scf06091g01010.1	sp|Q39262|ZFP3_ARATH	*-*-	Zinc finger protein 3	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf04943g00001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf25930g00001.1			Unknown protein		
Niben101Scf09938g00003.1	sp|Q9SHD1|EXPB4_ARATH	***-	Expansin-B4	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0019953 (sexual reproduction)
Niben101Scf02552g01022.1	gb|KEH40236.1|	***-	LA-related protein 6 LA RNA-binding domain protein [Medicago truncatula]	IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf01991g06001.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00206g01030.1	ref|XP_002533408.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF28981.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01237g12004.1	sp|Q3C1Q5|CCSA_NICSY	****	Cytochrome c biogenesis protein CcsA	IPR002541 (Cytochrome c assembly protein)	GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf09284g02001.1	sp|Q9FJR0|RENT1_ARATH	****	Regulator of nonsense transcripts 1 homolog	IPR018999 (RNA helicase UPF1, UPF2-interacting domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000184 (nuclear-transcribed mRNA catabolic process, nonsense-mediated decay), GO:0003677 (DNA binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008270 (zinc ion binding)
Niben101Scf03834g03013.1	ref|XP_002528223.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF34156.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf15963g01019.1	AT1G71500.1	*-*-	Rieske (2Fe-2S) domain-containing protein LENGTH=287	IPR017941 (Rieske [2Fe-2S] iron-sulphur domain), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0016491 (oxidoreductase activity), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04509g01006.1	AT5G66230.1	***-	Chalcone-flavanone isomerase family protein LENGTH=329		
Niben101Scf02749g01008.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01596g05002.1	sp|Q93Y09|SCP45_ARATH	****	Serine carboxypeptidase-like 45	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03254g13005.1	sp|A4XKA5|DNAJ_CALS8	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf02798g00024.1	sp|P58311|PSAA_WHEAT	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf25928g00013.1	sp|B4RYG2|SUCC_ALTMD	--*-	Succinyl-CoA ligase [ADP-forming] subunit beta		
Niben101Scf04106g03006.1	AT1G11390.1	***-	Protein kinase superfamily protein LENGTH=624	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10498g01003.1	AT5G19450.1	****	calcium-dependent protein kinase 19 LENGTH=533	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13240g00005.1	dbj|BAO49708.1|	*-*-	nuclear pore complex protein Nup136d [Nicotiana benthamiana]		
Niben101Scf08544g01022.1	sp|Q94BN0|BT2_ARATH	*-*-	BTB/POZ and TAZ domain-containing protein 2	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Ctg00174g00001.1	AT4G28850.1	*-**	xyloglucan endotransglucosylase/hydrolase 26 LENGTH=292	IPR010713 (Xyloglucan endo-transglycosylase, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf06829g02008.1	AT5G27240.1	*-*-	DNAJ heat shock N-terminal domain-containing protein LENGTH=1104	IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf15051g00012.1	AT2G36350.1	*-**	Protein kinase superfamily protein LENGTH=949	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04988g00005.1	sp|Q54X82|AP1B_DICDI	****	AP-1 complex subunit beta	IPR009028 (Coatomer/calthrin adaptor appendage, C-terminal subdomain), IPR012295 (Beta2-adaptin/TBP, C-terminal domain), IPR013041 (Coatomer/clathrin adaptor appendage, Ig-like subdomain), IPR015151 (Beta-adaptin appendage, C-terminal subdomain), IPR016024 (Armadillo-type fold), IPR026739 (AP complex subunit beta)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030131 (clathrin adaptor complex)
Niben101Scf04794g01006.1	AT4G34770.1	***-	SAUR-like auxin-responsive protein family LENGTH=104	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf08777g05017.1			Unknown protein		
Niben101Scf02573g02004.1	emb|CDN11322.1|	--*-	Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Richelia intracellularis]		
Niben101Scf00854g11086.1	sp|B3QY19|RS12_CHLT3	*-**	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf07026g00004.1	sp|Q9SUD8|PP340_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf10412g01012.1	sp|Q9NV70|EXOC1_HUMAN	***-	Exocyst complex component 1	IPR019160 (Exocyst complex, component 1/SEC3)	
Niben101Scf01241g06003.1	sp|Q3V518|PSBE_ACOCL	***-	Cytochrome b559 subunit alpha	IPR006217 (Photosystem II cytochrome b559, alpha subunit)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf02517g16001.1	AT2G39470.1	***-	PsbP-like protein 2 LENGTH=238	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf08338g01024.1	AT1G50660.1	***-	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=725	IPR019368 (Ribosomal protein S23/S29, mitochondrial)	
Niben101Scf04847g00009.1	sp|Q9FM65|FLA1_ARATH	***-	Fasciclin-like arabinogalactan protein 1	IPR000782 (FAS1 domain)	
Niben101Scf10753g01023.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf05411g02018.1	AT1G75710.1	*-*-	C2H2-like zinc finger protein LENGTH=462	IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain)	GO:0003950 (NAD+ ADP-ribosyltransferase activity)
Niben101Scf00015g00005.1			Unknown protein		
Niben101Scf09454g00001.1	emb|CDY30736.1|	*-*-	BnaA02g33580D [Brassica napus]		
Niben101Scf03446g10002.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf01792g00022.1	AT4G31420.2	***-	Zinc finger protein 622 LENGTH=405		
Niben101Scf20887g00002.1	sp|Q6S4P4|RF2B_ORYSJ	*-*-	Transcription factor RF2b		
Niben101Scf00920g03004.1	sp|A1EC31|TDIF_ZINVI	***-	CLAVATA3/ESR (CLE)-related protein TDIF		
Niben101Scf05627g01018.1	AT2G01190.1	*-*-	Octicosapeptide/Phox/Bem1p family protein LENGTH=720	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf02825g00016.1	sp|Q9ZPY2|LAC6_ARATH	***-	Laccase-6	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06105g01005.1	sp|Q3ZC01|CNOT7_BOVIN	***-	CCR4-NOT transcription complex subunit 7	IPR006941 (Ribonuclease CAF1), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Scf11000g00005.1	sp|P93755|C3H30_ARATH	***-	Zinc finger CCCH domain-containing protein 30	IPR000571 (Zinc finger, CCCH-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf00854g01007.1	sp|A4JGC0|NUOK_BURVG	--*-	NADH-quinone oxidoreductase subunit K		
Niben101Scf03832g02013.1	sp|Q8LBH4|SPX1_ARATH	***-	SPX domain-containing protein 1	IPR004331 (SPX, N-terminal)	
Niben101Scf00135g04010.1	AT4G34760.1	***-	SAUR-like auxin-responsive protein family LENGTH=107	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf04294g05003.1	emb|CAO03013.1|	***-	nodule inception protein [Medicago truncatula var. truncatula]	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain)	GO:0005515 (protein binding)
Niben101Scf02793g11014.1			Unknown protein		
Niben101Scf01230g00012.1	sp|Q8R139|S29A4_MOUSE	****	Equilibrative nucleoside transporter 4	IPR002259 (Equilibrative nucleoside transporter)	GO:0005337 (nucleoside transmembrane transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf06180g00014.1	sp|Q2SWT5|ISPF_BURTA	****	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	IPR003526 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase)	GO:0008685 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity), GO:0016114 (terpenoid biosynthetic process)
Niben101Scf05177g00008.1	AT3G50120.1	***-	Plant protein of unknown function (DUF247) LENGTH=531	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf00321g05032.1	AT5G22870.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=207	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf02217g05010.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04941g03011.1	sp|P13798|ACPH_HUMAN	*-*-	Acylamino-acid-releasing enzyme	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf00418g02007.1	sp|Q94C77|RPKL_ARATH	****	Receptor protein kinase-like protein	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01326g11031.1	AT5G15050.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=434	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf00793g09007.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13776g02016.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf04840g01003.1	sp|Q63472|KCNH1_RAT	*-**	Potassium voltage-gated channel subfamily H member 1	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR020683 (Ankyrin repeat-containing domain)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0005515 (protein binding), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf04040g09015.1	sp|A4GSN8|NUA_ARATH	--*-	Nuclear-pore anchor		
Niben101Scf02610g00004.1	sp|Q2U600|BCP1_ASPOR	*-*-	Protein bcp1	IPR025602 (BCP1 family)	
Niben101Scf21401g00003.1	sp|Q93YQ7|GUN24_ARATH	***-	Endoglucanase 24	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Ctg15323g00002.1	sp|Q9Z2C9|MTMR7_MOUSE	*-*-	Myotubularin-related protein 7	IPR016130 (Protein-tyrosine phosphatase, active site), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf00952g03003.1	sp|P04770|GLNA1_PHAVU	*-**	Glutamine synthetase PR-1	IPR008147 (Glutamine synthetase, beta-Grasp), IPR014746 (Glutamine synthetase/guanido kinase, catalytic domain), IPR027302 (Glutamine synthetase, N-terminal conserved site), IPR027303 (Glutamine synthetase, glycine-rich site)	GO:0003824 (catalytic activity), GO:0004356 (glutamate-ammonia ligase activity), GO:0006542 (glutamine biosynthetic process), GO:0006807 (nitrogen compound metabolic process)
Niben101Scf15373g00012.1	sp|P48000|KNAT3_ARATH	***-	Homeobox protein knotted-1-like 3	IPR005539 (ELK), IPR005540 (KNOX1), IPR005541 (KNOX2), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00228g11012.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf15349g00003.1	sp|Q9JLJ4|ELOV2_MOUSE	***-	Elongation of very long chain fatty acids protein 2	IPR002076 (ELO family)	GO:0016021 (integral component of membrane)
Niben101Scf02298g03009.1	sp|Q69S43|CCD61_ORYSJ	***-	Cyclin-D6-1	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf00854g09030.1	sp|P09003|MI25_TOBAC	*-**	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf04535g02019.1			Unknown protein		
Niben101Scf09017g00015.1	sp|P93028|UBE11_ARATH	****	Ubiquitin-activating enzyme E1 1	IPR000011 (Ubiquitin/SUMO-activating enzyme E1), IPR018965 (Ubiquitin-activating enzyme e1, C-terminal), IPR023280 (Ubiquitin-like 1 activating enzyme, catalytic cysteine domain)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0006464 (cellular protein modification process), GO:0008641 (small protein activating enzyme activity)
Niben101Scf06026g01008.1	sp|Q9HSF6|RNH_HALSA	--**	Ribonuclease HI	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf04140g01010.1	sp|O17320|ACT_CRAGI	***-	Actin	IPR004000 (Actin family)	
Niben101Scf25893g00005.1	sp|P46086|KIME_ARATH	****	Mevalonate kinase	IPR006206 (Mevalonate/galactokinase)	GO:0004496 (mevalonate kinase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008152 (metabolic process), GO:0008299 (isoprenoid biosynthetic process), GO:0016301 (kinase activity), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf17164g00006.1	emb|CDY03744.1|	***-	BnaA02g14930D [Brassica napus]		
Niben101Scf01945g01012.1	sp|P95987|RS4_SULSO	****	30S ribosomal protein S4	IPR001912 (Ribosomal protein S4/S9, N-terminal), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0006412 (translation), GO:0015935 (small ribosomal subunit), GO:0019843 (rRNA binding)
Niben101Scf06535g00001.1	AT1G48110.1	***-	evolutionarily conserved C-terminal region 7 LENGTH=639	IPR007275 (YTH domain)	
Niben101Scf01009g02005.1	ref|NP_568106.1|	--*-	rib [Arabidopsis thaliana]		
Niben101Scf01125g02022.1	AT2G44380.1	*-*-	Cysteine/Histidine-rich C1 domain family protein LENGTH=247	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR024991 (Anaphase-promoting complex subunit 11)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005680 (anaphase-promoting complex), GO:0008270 (zinc ion binding)
Niben101Scf02572g04005.1	sp|O24407|IAA16_ARATH	***-	Auxin-responsive protein IAA16	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf03660g02005.1	sp|Q8LC79|GAT18_ARATH	****	GATA transcription factor 18	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03012g00009.1	sp|Q3B7T1|EDRF1_HUMAN	*-*-	Erythroid differentiation-related factor 1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07028g01001.1	sp|Q9LQR0|LBD1_ARATH	***-	LOB domain-containing protein 1	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf11994g00005.1	sp|B9L3S8|FTSH2_THERP	*-**	ATP-dependent zinc metalloprotease FtsH 2	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00854g07045.1	sp|P34869|CYB_HETFR	*-*-	Cytochrome b	IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf03091g00017.1	sp|P40855|PEX19_HUMAN	*-*-	Peroxisomal biogenesis factor 19	IPR006708 (Pex19 protein)	GO:0005777 (peroxisome)
Niben101Scf08579g01001.1			Unknown protein		
Niben101Scf01795g20002.1	sp|Q3SRZ7|KGUA_NITWN	****	Guanylate kinase	IPR008144 (Guanylate kinase-like), IPR008145 (Guanylate kinase/L-type calcium channel beta subunit), IPR017665 (Guanylate kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004385 (guanylate kinase activity), GO:0006163 (purine nucleotide metabolic process)
Niben101Scf08047g04008.1	sp|Q8S8V2|YCF2A_ATRBE	*-*-	Protein Ycf2 A	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf00789g00009.1	sp|P42041|ALDH_ALTAL	****	Aldehyde dehydrogenase	IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf06926g08003.1			Unknown protein		
Niben101Scf06661g03001.1	gb|AAG37453.1|	***-	seed maturation protein LEA 4 [Glycine tomentella]	IPR005513 (Late embryogenesis abundant protein, LEA-25/LEA-D113)	GO:0009790 (embryo development)
Niben101Scf02819g07007.1	sp|Q9UNW9|NOVA2_HUMAN	--**	RNA-binding protein Nova-2	IPR004088 (K Homology domain, type 1)	GO:0003723 (RNA binding)
Niben101Scf15549g00002.1	sp|Q8KCJ0|HEM2_CHLTE	***-	Delta-aminolevulinic acid dehydratase	IPR001731 (Porphobilinogen synthase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004655 (porphobilinogen synthase activity), GO:0033014 (tetrapyrrole biosynthetic process), GO:0046872 (metal ion binding)
Niben101Scf13540g04030.1	sp|P82177|MDH_SHEON	****	Malate dehydrogenase	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf05605g00041.1	sp|P92547|ATP62_ARATH	****	ATP synthase subunit a-2	IPR000568 (ATPase, F0 complex, subunit A)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf00109g07005.1	AT1G76640.1	****	Calcium-binding EF-hand family protein LENGTH=159	IPR011992 (EF-hand domain pair), IPR028974 (TSP type-3 repeat)	GO:0005509 (calcium ion binding)
Niben101Scf06101g02007.1	sp|Q39644|LEA5_CITSI	--*-	Late embryogenesis abundant protein Lea5	IPR004926 (Late embryogenesis abundant protein, LEA-5)	GO:0006950 (response to stress)
Niben101Scf00837g12028.1	sp|Q1RMP0|RPA12_BOVIN	****	DNA-directed RNA polymerase I subunit RPA12	IPR001222 (Zinc finger, TFIIS-type), IPR012164 (DNA-directed RNA polymerase, subunit C11/M/9)	GO:0003676 (nucleic acid binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Ctg03311g00002.1	AT2G42940.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=257	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf06708g02012.1	sp|O80877|EF4L1_ARATH	***-	Protein ELF4-LIKE 1	IPR009741 (Protein of unknown function DUF1313)	
Niben101Scf00478g00005.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00150g03007.1	sp|B1M0M1|ACSA_METRJ	*-*-	Acetyl-coenzyme A synthetase	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf07528g01010.1			Unknown protein		
Niben101Scf00603g01001.1	sp|Q9LNJ5|BH013_ARATH	***-	Transcription factor bHLH13	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf00276g00011.1	sp|Q88YK7|PSTB2_LACPL	--*-	Phosphate import ATP-binding protein PstB 2		
Niben101Scf06823g00012.1	AT4G30520.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=648	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf05969g01002.1	sp|Q6NRY2|NOL6_XENLA	***-	Nucleolar protein 6	IPR005554 (Nrap protein)	
Niben101Scf00109g02025.1	AT3G26900.1	***-	shikimate kinase like 1 LENGTH=280	IPR000623 (Shikimate kinase/Threonine synthase-like 1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03770g03003.1	emb|CDY59807.1|	*-*-	BnaA05g35380D [Brassica napus]		
Niben101Scf13411g00011.1	gb|AFJ53042.1|	*-*-	UDP-glycosyltransferase 1 [Linum usitatissimum]		
Niben101Scf04727g02002.1	sp|Q10Q08|RFA1B_ORYSJ	--*-	Replication protein A 70 kDa DNA-binding subunit B		
Niben101Scf00894g04002.1	gb|ABY59208.1|	***-	[Arabidopsis thaliana]		
Niben101Scf22936g01003.1			Unknown protein		
Niben101Ctg15402g00004.1	ref|XP_007036194.1|	***-	EXECUTER1 protein, chloroplast, putative isoform 3 [Theobroma cacao] gb|EOY20695.1| EXECUTER1 protein, chloroplast, putative isoform 3 [Theobroma cacao]	IPR021894 (Protein of unknown function DUF3506)	
Niben101Scf01061g01030.1	sp|Q98N53|RS19_RHILO	*-*-	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03252g04002.1	sp|O81027|HMGCL_ARATH	*-**	Hydroxymethylglutaryl-CoA lyase, mitochondrial	IPR013785 (Aldolase-type TIM barrel), IPR030020 (Hydroxymethylglutaryl-CoA lyase, mitochondrial)	GO:0003824 (catalytic activity), GO:0004419 (hydroxymethylglutaryl-CoA lyase activity), GO:0005739 (mitochondrion), GO:0046951 (ketone body biosynthetic process)
Niben101Scf06504g01030.1	sp|C7N1I1|FTSH_SLAHD	*-**	ATP-dependent zinc metalloprotease FtsH	IPR000642 (Peptidase M41), IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis)
Niben101Scf06509g04015.1	ref|XP_002514212.1|	****	transferase, transferring pentosyl groups, putative [Ricinus communis] gb|EEF48166.1| transferase, transferring pentosyl groups, putative [Ricinus communis]	IPR007306 (Initiator tRNA phosphoribosyl transferase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0016763 (transferase activity, transferring pentosyl groups)
Niben101Scf21083g00004.1	sp|Q42430|ZFP1_WHEAT	--*-	Zinc finger protein 1	IPR007087 (Zinc finger, C2H2), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0046872 (metal ion binding)
Niben101Scf01795g04024.1	sp|Q146Y5|GATA_BURXL	--*-	Glutamyl-tRNA(Gln) amidotransferase subunit A		
Niben101Scf10627g00007.1	emb|CDX76711.1|	*-*-	BnaC08g32970D [Brassica napus]		
Niben101Scf03226g03008.1	ref|XP_007040372.1|	***-	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao] gb|EOY24873.1| Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf02864g11011.1	sp|A7RJI7|CCZ1_NEMVE	***-	Vacuolar fusion protein CCZ1 homolog	IPR013176 (Protein of unknown function DUF1712, fungi)	
Niben101Scf00425g03034.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03254g00001.1	sp|Q1RJT3|ODP2_RICBR	***-	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	IPR000089 (Biotin/lipoyl attachment), IPR001078 (2-oxoacid dehydrogenase acyltransferase, catalytic domain), IPR004167 (E3-binding domain), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf02437g07005.1	sp|Q9TLC2|NU5C_TECST	*-**	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic	IPR000307 (Ribosomal protein S16), IPR002128 (NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminal), IPR023803 (Ribosomal protein S16 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0009536 (plastid), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf01742g01001.1	sp|Q949Z1|PGLR4_ARATH	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01520g07009.1	sp|Q8C7R4|UBA6_MOUSE	*-**	Ubiquitin-like modifier-activating enzyme 6	IPR016040 (NAD(P)-binding domain), IPR023318 (Ubiquitin activating enzyme, alpha domain)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0006464 (cellular protein modification process), GO:0008641 (small protein activating enzyme activity), GO:0016881 (acid-amino acid ligase activity), GO:0045116 (protein neddylation)
Niben101Scf01392g03014.1	AT1G64620.1	****	Dof-type zinc finger DNA-binding family protein LENGTH=352	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00542g07008.1	AT5G37540.1	***-	Eukaryotic aspartyl protease family protein LENGTH=442	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00362g00004.1	AT5G04020.1	*-**	calmodulin binding LENGTH=1495	IPR012417 (Calmodulin-binding domain, plant)	GO:0005516 (calmodulin binding)
Niben101Scf01252g01009.1	sp|Q6Q9I2|MAD15_ORYSJ	*-*-	MADS-box transcription factor 15	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01693g03001.1	gb|ABA97240.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf00272g08005.1	AT5G39820.1	***-	NAC domain containing protein 94 LENGTH=337	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02093g05004.1	AT5G05950.1	***-	maternal effect embryo arrest 60 LENGTH=175		
Niben101Scf33689g00014.1	AT1G47530.1	***-	MATE efflux family protein LENGTH=484	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03138g01014.1			Unknown protein		
Niben101Scf00644g00014.1	sp|Q8N7C7|RN148_HUMAN	*-*-	RING finger protein 148	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06295g04005.1	sp|Q9M1E7|TET3_ARATH	*-*-	Tetraspanin-3		
Niben101Scf02482g01017.1	gb|AES98980.2|	****	nucleotidyltransferase [Medicago truncatula]	IPR002058 (PAP/25A-associated), IPR002934 (Nucleotidyl transferase domain)	GO:0016779 (nucleotidyltransferase activity)
Niben101Scf18589g00018.1	AT5G47540.1	*-*-	Mo25 family protein LENGTH=343	IPR011989 (Armadillo-like helical), IPR013878 (Mo25-like)	
Niben101Scf00818g00001.1	gb|AEM24937.1|	***-	thionin-like protein [Nicotiana tabacum]		
Niben101Scf05154g01014.1	AT2G35585.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=156		
Niben101Scf00289g05001.1	sp|Q8R7X4|KAD_CALS4	****	Adenylate kinase	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004017 (adenylate kinase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0016776 (phosphotransferase activity, phosphate group as acceptor), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf02136g01015.1	AT3G15358.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=144		
Niben101Scf16106g00001.1	ref|NP_001237169.1|	***-	seed maturation protein PM41 [Glycine max] seed maturation protein PM41 [Glycine max]		
Niben101Scf04388g01009.1	ref|XP_002517792.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF44599.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08470g03006.1			Unknown protein		
Niben101Scf04033g02006.1	gb|ABG00910.1|	--*-	disease resistance protein [Arabidopsis thaliana]		
Niben101Scf09052g03004.1	sp|Q23696|RFA1_CRIFA	--*-	Replication factor A 51 kDa subunit	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf09150g02002.1	AT5G18650.1	****	CHY-type/CTCHY-type/RING-type Zinc finger protein LENGTH=267	IPR004039 (Rubredoxin-type fold), IPR008913 (Zinc finger, CHY-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf01372g11007.1	sp|Q84VW5|MED32_ARATH	*-*-	Mediator of RNA polymerase II transcription subunit 32		
Niben101Scf00187g02037.1	emb|CDX95432.1|	***-	BnaC01g33240D [Brassica napus]		
Niben101Scf09150g02003.1	ref|WP_029344731.1|	--*-	dTDP-glucose 4,6-dehydratase [Lactococcus lactis]		
Niben101Scf02499g01001.1			Unknown protein		
Niben101Scf06096g01013.1	sp|O49255|NAC29_ARATH	--**	NAC transcription factor 29	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11447g02014.1			Unknown protein		
Niben101Scf02969g00017.1	sp|O13973|MRP10_SCHPO	-**-	37S ribosomal protein mrp10, mitochondrial	IPR009069 (Cysteine alpha-hairpin motif superfamily)	
Niben101Scf00952g01004.1	AT4G15470.1	***-	Bax inhibitor-1 family protein LENGTH=256	IPR006214 (Bax inhibitor 1-related)	
Niben101Scf03595g03018.1	AT5G23150.1	*-*-	Tudor/PWWP/MBT domain-containing protein LENGTH=1392	IPR006569 (CID domain)	
Niben101Scf02210g05007.1	sp|Q8LG98|OTUBL_ARATH	***-	Ubiquitin thioesterase otubain-like	IPR019400 (Peptidase C65, otubain)	
Niben101Scf05323g00007.1	AT5G58950.1	****	Protein kinase superfamily protein LENGTH=525	IPR011009 (Protein kinase-like domain), IPR015783 (Serine/threonine-protein kinase HT1, plant)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03227g04007.1	sp|Q9H2W6|RM46_HUMAN	*-*-	39S ribosomal protein L46, mitochondrial	IPR021757 (Ribosomal protein L46)	
Niben101Scf00440g01007.1	sp|Q42521|DCE1_ARATH	*-*-	Glutamate decarboxylase 1	IPR015424 (Pyridoxal phosphate-dependent transferase)	
Niben101Scf01830g01027.1	sp|Q84WP6|NAC43_ARATH	***-	NAC domain-containing protein 43	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05348g03009.1	sp|O81635|ATK4_ARATH	*-**	Kinesin-4	IPR001752 (Kinesin motor domain), IPR016024 (Armadillo-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf08388g00008.1	sp|Q8W4J3|QSOX1_ARATH	****	Sulfhydryl oxidase 1	IPR012336 (Thioredoxin-like fold), IPR017905 (ERV/ALR sulfhydryl oxidase domain)	GO:0016972 (thiol oxidase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06267g03026.1	sp|Q54S59|WDR61_DICDI	***-	WD repeat-containing protein 61 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf02133g05011.1	ref|XP_007049405.1|	*-*-	Cell wall protein AWA1 isoform 3 [Theobroma cacao] gb|EOX93562.1| Cell wall protein AWA1 isoform 3 [Theobroma cacao]	IPR009060 (UBA-like), IPR009719 (Protein of unknown function DUF1296, plant)	GO:0005515 (protein binding)
Niben101Scf03914g01004.1	AT3G53140.1	*-*-	O-methyltransferase family protein LENGTH=359	IPR012967 (Plant methyltransferase dimerisation)	GO:0046983 (protein dimerization activity)
Niben101Scf00447g00009.1			Unknown protein		
Niben101Scf07027g06002.1	AT4G38250.1	*-*-	Transmembrane amino acid transporter family protein LENGTH=436	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf07785g00005.1			Unknown protein		
Niben101Scf02153g02007.1			Unknown protein		
Niben101Scf03341g01001.1	sp|Q8EF78|OPGH_SHEON	--*-	Glucans biosynthesis glucosyltransferase H	IPR002150 (Ribosomal protein L31)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00854g10019.1			Unknown protein		
Niben101Scf12415g00010.1			Unknown protein		
Niben101Scf01535g01009.1	sp|Q9M907|PP217_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00725g03015.1	sp|Q3U4B4|LIPN_MOUSE	***-	Lipase member N	IPR006693 (Partial AB-hydrolase lipase domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf01144g00001.1			Unknown protein		
Niben101Scf06817g00014.1			Unknown protein		
Niben101Scf11750g00005.1	AT1G23480.1	***-	cellulose synthase-like A3 LENGTH=556	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf13332g00003.1	gb|ABG21994.1|	--*-	transposon protein, putative, CACTA, En/Spm sub-class, expressed [Oryza sativa Japonica Group]		
Niben101Scf02832g04001.1	AT4G34190.1	***-	stress enhanced protein 1 LENGTH=146	IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf01219g06002.1			Unknown protein		
Niben101Scf11886g00003.1			Unknown protein		
Niben101Scf00646g03011.1	sp|Q9C519|WRKY6_ARATH	*-**	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03504g05004.1	gb|AAC97215.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf14958g00016.1	ref|XP_002514878.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF47432.1| conserved hypothetical protein [Ricinus communis]	IPR008480 (Protein of unknown function DUF761, plant), IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf07655g01004.1	sp|Q84MA5|CAAT1_ARATH	****	Cationic amino acid transporter 1	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf02475g08004.1	sp|O22348|TBA2_ELEIN	--*-	Tubulin alpha-2 chain	IPR000217 (Tubulin)	GO:0005874 (microtubule), GO:0007017 (microtubule-based process)
Niben101Scf05961g02032.1	sp|Q8L7B2|SCP20_ARATH	****	Serine carboxypeptidase-like 20	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00404g01015.1	prf||1718316A	*-*-	granule-bound starch synthase	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf01409g00018.1	AT5G55950.1	***-	Nucleotide/sugar transporter family protein LENGTH=398	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf00288g12002.1	gb|KEH34361.1|	***-	phytol kinase [Medicago truncatula]	IPR000374 (Phosphatidate cytidylyltransferase)	GO:0016020 (membrane), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02621g02011.1			Unknown protein		
Niben101Scf02497g07001.1	AT2G07771.2	****	Cytochrome C assembly protein LENGTH=256	IPR002541 (Cytochrome c assembly protein), IPR003557 (Cytochrome c-type biogenesis protein CcmC)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf08806g03003.1	sp|Q9LU89|2A5N_ARATH	****	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf02929g01090.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf11609g00008.1	gb|AIS35921.1|	--*-	MYB transcription factor 4 [Phalaenopsis equestris]		
Niben101Scf03817g11007.1	AT1G52980.1	*-**	GTP-binding family protein LENGTH=576	IPR006073 (GTP binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00415g07007.1	sp|Q39786|PGLR_GOSHI	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06823g00013.1	AT1G49870.1	***-	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 6518 Blast hits to 5022 proteins in 522 species: Archae - 49; Bacteria - 635; Metazoa - 3264; Fungi - 379; Plants - 242; Viruses - 9; Other Eukaryotes - 1940 (source: NCBI BLink). LENGTH=828		
Niben101Scf03710g05003.1	sp|Q1QUI2|PSD_CHRSD	****	Phosphatidylserine decarboxylase proenzyme	IPR003817 (Phosphatidylserine decarboxylase-related)	GO:0004609 (phosphatidylserine decarboxylase activity), GO:0008654 (phospholipid biosynthetic process)
Niben101Scf03981g00006.1	sp|O58994|ARLMC_PYRHO	*-**	23S rRNA (uracil(747)-C(5))-methyltransferase	IPR000571 (Zinc finger, CCCH-type), IPR010280 ((Uracil-5)-methyltransferase family), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase), IPR030390 (RNA methyltransferase TrmA, active site)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0006396 (RNA processing), GO:0008173 (RNA methyltransferase activity), GO:0046872 (metal ion binding)
Niben101Scf05087g02010.1	sp|Q03ZL5|ECFA2_LEUMM	****	Energy-coupling factor transporter ATP-binding protein EcfA2	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf00953g08013.1	AT3G22960.1	****	Pyruvate kinase family protein LENGTH=596	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf03842g02007.1	ref|XP_002525596.1|	****	hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gb|EEF36714.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01890g01016.1	sp|O32472|PHAJ_AERCA	***-	(R)-specific enoyl-CoA hydratase	IPR029069 (HotDog domain)	
Niben101Scf00438g00010.1	ref|YP_009045802.1|	*-*-	orf101b (mitochondrion) [Batis maritima] gb|AIC83405.1| orf101b (mitochondrion) [Batis maritima]		
Niben101Scf04158g00002.1	ref|XP_010095372.1|	--*-	Dehydration-responsive element-binding protein 3 [Morus notabilis] gb|AHJ25971.1| dehydration responsive element binding transcription factor [Morus notabilis] gb|EXB59791.1| Dehydration-responsive element-binding protein 3 [Morus notabilis]		
Niben101Scf01985g03006.1	sp|Q61315|APC_MOUSE	--*-	Adenomatous polyposis coli protein		
Niben101Scf31099g00003.1	sp|Q6AJW3|MSBA_DESPS	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf02476g03001.1	sp|Q570S7|CSLG1_ARATH	****	Cellulose synthase-like protein G1	IPR005150 (Cellulose synthase)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf04290g04018.1	sp|P41098|RL34_TOBAC	***-	60S ribosomal protein L34	IPR008195 (Ribosomal protein L34Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01721g01003.1	AT2G31820.1	***-	Ankyrin repeat family protein LENGTH=662	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf13361g01010.1	sp|Q9LFU9|GNA1_ARATH	****	Glucosamine 6-phosphate N-acetyltransferase	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Ctg09468g00002.1	sp|P15252|REF_HEVBR	***-	Rubber elongation factor protein	IPR008802 (Rubber elongation factor)	
Niben101Scf07589g02005.1	ref|WP_002796693.1|	****	Phot [Microcystis aeruginosa PCC 9809]	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf00447g03012.1	sp|Q9M153|GDL61_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf06365g00015.1	sp|P0CAX9|DEF21_ARATH	***-	Defensin-like protein 21		
Niben101Scf02553g02013.1	sp|O81832|Y4729_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR003609 (Apple-like)	
Niben101Scf01873g01004.1	AT5G05690.1	***-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf33742g00004.1	sp|A7QEU4|PER5_VITVI	****	Peroxidase 5	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08047g04007.1	gb|AAN04983.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf00487g05004.1	sp|A2WNF5|GLU2B_ORYSI	*-*-	Glucosidase 2 subunit beta	IPR002172 (Low-density lipoprotein (LDL) receptor class A repeat), IPR028146 (Glucosidase II beta subunit, N-terminal)	GO:0005515 (protein binding)
Niben101Scf00870g02011.1	sp|F7ASZ0|BTBD3_CALJA	--*-	BTB/POZ domain-containing protein 3	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf04219g01013.1	gb|KEH39688.1|	*-*-	P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]	IPR024481 (Helicase Sen1, N-terminal)	
Niben101Scf03208g07011.1	sp|Q56YJ8|FAMA_ARATH	*-*-	Transcription factor FAMA	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00472g02020.1	sp|Q940G0|TMN1_ARATH	***-	Transmembrane 9 superfamily member 1	IPR004240 (Nonaspanin (TM9SF)), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane)
Niben101Scf00705g03017.1	AT5G36930.2	*-*-	Disease resistance protein (TIR-NBS-LRR class) family LENGTH=1191	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf08635g00001.1	AT4G00030.1	***-	Plastid-lipid associated protein PAP / fibrillin family protein LENGTH=212	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf01155g01008.1	AT1G23750.1	***-	Nucleic acid-binding, OB-fold-like protein LENGTH=137	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf06775g00037.1	sp|Q5SPP5|EFR3B_DANRE	*-*-	Protein EFR3 homolog B	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01746g03004.1	sp|Q15814|TBCC_HUMAN	*-**	Tubulin-specific chaperone C	IPR016098 (Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal), IPR017901 (C-CAP/cofactor C-like domain), IPR027684 (Tubulin-specific chaperone C)	GO:0000902 (cell morphogenesis), GO:0007023 (post-chaperonin tubulin folding pathway)
Niben101Scf01520g05002.1	sp|Q8L4B2|NFYC9_ARATH	****	Nuclear transcription factor Y subunit C-9	IPR009072 (Histone-fold), IPR027170 (Transcriptional activator NFYC/HAP5 subunit)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005622 (intracellular), GO:0006355 (regulation of transcription, DNA-templated), GO:0016602 (CCAAT-binding factor complex), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf03427g10002.1	ref|XP_007043719.1|	***-	Vascular plant one zinc finger protein isoform 1 [Theobroma cacao] gb|EOX99550.1| Vascular plant one zinc finger protein isoform 1 [Theobroma cacao]		
Niben101Scf05271g00004.1	ref|XP_010092339.1|	--*-	Protein kinase G11A [Morus notabilis] gb|EXB51015.1| Protein kinase G11A [Morus notabilis]		
Niben101Scf04995g15004.1	AT3G19540.1	***-	Protein of unknown function (DUF620) LENGTH=485	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf04878g00031.1			Unknown protein		
Niben101Scf12555g00005.1	gb|KEH39902.1|	***-	Smr (small MutS-related) domain protein [Medicago truncatula]	IPR002625 (Smr protein/MutS2 C-terminal), IPR013899 (Domain of unknown function DUF1771)	
Niben101Scf02318g05010.1	sp|Q9FWA6|PP207_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01210g00008.1			Unknown protein		
Niben101Scf00229g00004.1	sp|Q6MDI5|FTSH_PARUW	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR005936 (Peptidase, FtsH), IPR011546 (Peptidase M41, FtsH extracellular), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf02041g02009.1	ref|XP_002521705.1|	--*-	poly(A) polymerase, putative [Ricinus communis] gb|EEF40692.1| poly(A) polymerase, putative [Ricinus communis]		
Niben101Scf17612g02009.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf08580g00016.1	sp|Q9VTG7|B3G2P_DROME	*-**	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P	IPR005027 (Glycosyl transferase, family 43), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0015018 (galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity), GO:0016020 (membrane)
Niben101Scf07579g01003.1	sp|Q3SWX8|RBBP7_BOVIN	--**	Histone-binding protein RBBP7	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf08142g03005.1	sp|Q8LPR5|TCP4_ARATH	***-	Transcription factor TCP4	IPR005333 (Transcription factor, TCP)	
Niben101Scf06977g00014.1	sp|Q5HQI5|CLPB_STAEQ	***-	Chaperone protein ClpB	IPR001270 (ClpA/B family), IPR004176 (Clp, N-terminal), IPR019489 (Clp ATPase, C-terminal), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0019538 (protein metabolic process)
Niben101Scf00614g00028.1	sp|O23547|EXLB1_ARATH	***-	Expansin-like B1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region)
Niben101Scf27243g00011.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf01005g07008.1	AT5G10470.2	*-*-	kinesin like protein for actin based chloroplast movement 1 LENGTH=1274		
Niben101Scf03422g01003.1	sp|Q8N9N2|ASCC1_HUMAN	*-*-	Activating signal cointegrator 1 complex subunit 1	IPR004088 (K Homology domain, type 1), IPR009097 (RNA ligase/cyclic nucleotide phosphodiesterase)	GO:0003723 (RNA binding)
Niben101Scf00219g06002.1	AT1G47740.1	***-	PPPDE putative thiol peptidase family protein LENGTH=279	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf06218g00007.1			Unknown protein		
Niben101Scf12498g00018.1	AT5G18020.1	***-	SAUR-like auxin-responsive protein family LENGTH=91	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf08034g01002.1	AT5G22250.1	***-	Polynucleotidyl transferase, ribonuclease H-like superfamily protein LENGTH=278	IPR006941 (Ribonuclease CAF1), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Scf04950g05004.1	gb|KEH41027.1|	--*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf03077g03022.1	AT1G66540.1	***-	Cytochrome P450 superfamily protein LENGTH=386	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg12291g00001.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06105g01006.1	ref|XP_007019944.1|	***-	Galact isoform 3 [Theobroma cacao]	IPR012919 (SUN domain)	
Niben101Scf04825g01006.1	sp|Q5ZL42|BZW2_CHICK	***-	Basic leucine zipper and W2 domain-containing protein 2	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf01362g04019.1	sp|P40973|PLY_LILLO	****	Pectate lyase	IPR007524 (Pectate lyase, N-terminal), IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	GO:0030570 (pectate lyase activity)
Niben101Scf01041g01008.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf08975g02018.1	sp|Q93Z81|CAX3_ARATH	****	Vacuolar cation/proton exchanger 3	IPR004713 (Calcium/proton exchanger)	GO:0006812 (cation transport), GO:0006816 (calcium ion transport), GO:0008324 (cation transmembrane transporter activity), GO:0015369 (calcium:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01292g01008.1	sp|P43735|DNAJ_HAEIN	--*-	Chaperone protein DnaJ	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Ctg15807g00002.1	sp|Q93VY3|NAC72_ARATH	***-	NAC domain-containing protein 72	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10753g01022.1	AT1G11260.1	****	sugar transporter 1 LENGTH=522	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00150g04014.1	sp|Q8LPU5|CMT3_MAIZE	*-*-	DNA (cytosine-5)-methyltransferase 3	IPR023780 (Chromo domain), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00854g09076.1	sp|Q47HG6|NUOK_DECAR	****	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf02929g06019.1	gb|ADV15953.1|	***-	maturase, partial (mitochondrion) [Syringa vulgaris]		
Niben101Scf27894g00003.1	sp|Q6L545|GID1_ORYSJ	*-*-	Gibberellin receptor GID1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf03357g00036.1	ref|XP_002514962.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF47516.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02072g02008.1	sp|Q9LHP2|SL30A_ARATH	*-*-	Serine/arginine-rich SC35-like splicing factor SCL30A		
Niben101Ctg14436g00002.1	sp|Q6L8F9|ZIP6_ORYSJ	****	Zinc transporter 6	IPR003689 (Zinc/iron permease)	GO:0005385 (zinc ion transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport), GO:0071577 (zinc ion transmembrane transport)
Niben101Scf00757g00002.1	sp|Q8L9Y0|SCP25_ARATH	****	Serine carboxypeptidase-like 25	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00854g11085.1	sp|Q7WCU6|NUOH_BORBR	--*-	NADH-quinone oxidoreductase subunit H		
Niben101Scf22707g00001.1			Unknown protein		
Niben101Scf03857g04024.1			Unknown protein		
Niben101Scf01831g02001.1	sp|Q9FSG7|TP1A_MALDO	***-	Thaumatin-like protein 1a	IPR001938 (Thaumatin)	
Niben101Scf00239g09001.1	sp|P33413|DUR3_YEAST	*-**	Urea active transporter	IPR001734 (Sodium/solute symporter)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf10412g01011.1	AT5G07990.1	*-*-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02461g09002.1	AT3G54350.1	***-	Forkhead-associated (FHA) domain-containing protein LENGTH=702	IPR008984 (SMAD/FHA domain), IPR025999 (Microspherule protein, N-terminal domain)	GO:0005515 (protein binding)
Niben101Scf03638g00019.1	AT1G80490.2	***-	TOPLESS-related 1 LENGTH=1120	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR027728 (Topless family)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01236g05010.1	sp|Q7XBQ9|RGA2_SOLBU	--*-	Disease resistance protein RGA2		
Niben101Scf04021g08008.1	sp|Q25AG5|ERG3_ORYSI	***-	Elicitor-responsive protein 3	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01374g07013.1	AT1G79770.1	***-	Protein of unknown function (DUF1677) LENGTH=167	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf28488g00001.1	AT5G55350.1	***-	MBOAT (membrane bound O-acyl transferase) family protein LENGTH=345		
Niben101Scf00369g02005.1	AT4G15755.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=289	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01980g09011.1	sp|O62735|AQP2_SHEEP	***-	Aquaporin-2	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03751g02006.1			Unknown protein		
Niben101Scf06091g00016.1	sp|Q9SAI5|RL71_ARATH	***-	60S ribosomal protein L7-1	IPR005998 (Ribosomal protein L7, eukaryotic)	
Niben101Ctg14704g00002.1	sp|P52577|IFRH_ARATH	*-*-	Isoflavone reductase homolog P3	IPR016040 (NAD(P)-binding domain)	
Niben101Scf00157g07009.1	sp|Q94C53|DDRGK_ARATH	*-*-	DDRGK domain-containing protein 1	IPR019153 (DDRGK domain containing protein)	
Niben101Scf07267g02005.1	sp|Q7X996|CIPK2_ORYSJ	***-	CBL-interacting protein kinase 2	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00956g03010.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf12874g00001.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf18898g00004.1	sp|P52434|RPAB3_HUMAN	****	DNA-directed RNA polymerases I, II, and III subunit RPABC3	IPR005570 (RNA polymerase, Rpb8)	GO:0006351 (transcription, DNA-templated)
Niben101Scf00289g06003.1	ref|WP_011279089.1|	--*-	peptidase S41 [Sulfolobus acidocaldarius] ref|YP_256880.1| tricorn protease [Sulfolobus acidocaldarius DSM 639] gb|AAY81587.1| tricorn protease [Sulfolobus acidocaldarius DSM 639]		
Niben101Scf03708g02009.1	sp|O65570|VILI4_ARATH	***-	Villin-4	IPR007122 (Villin/Gelsolin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0051015 (actin filament binding), GO:0051017 (actin filament bundle assembly)
Niben101Scf08783g00007.1	ref|XP_002526943.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF35430.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04509g01007.1	sp|Q9Y4A5|TRRAP_HUMAN	*-*-	Transformation/transcription domain-associated protein	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02744g00014.1	sp|A2C4I3|CH10_PROM1	*-*-	10 kDa chaperonin	IPR020818 (Chaperonin Cpn10)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding)
Niben101Scf00494g04009.1	gb|ELR52794.1|	--*-	Retrograde Golgi transport protein RGP1-like protein, partial [Bos mutus]	IPR014756 (Immunoglobulin E-set), IPR014848 (Reduced growth phenotype protein 1)	
Niben101Scf00454g00010.1			Unknown protein		
Niben101Scf15594g00012.1	sp|Q0IIS3|EPHX3_XENTR	--*-	Epoxide hydrolase 3	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf05326g00011.1	ref|NP_001048145.1|	*-*-	product [Oryza sativa Japonica Group]	IPR008976 (Lipase/lipooxygenase, PLAT/LH2)	GO:0005515 (protein binding)
Niben101Scf24232g00002.1	sp|A6WXW9|ATPA_OCHA4	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf07984g02007.1	emb|CBM56257.1|	*-*-	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	
Niben101Scf09360g02003.1	sp|Q12V70|RTCA_METBU	--*-	RNA 3'-terminal phosphate cyclase	IPR010369 (Protein of unknown function DUF966)	
Niben101Scf00206g01031.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf00369g16003.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf06087g01003.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf38658g00007.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf06898g03014.1	sp|O65888|NLTP_STRHE	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf02348g05001.1			Unknown protein		
Niben101Scf05676g03004.1	sp|P81391|MYB05_ANTMA	*-*-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01824g00001.1	sp|Q09638|NPR15_CAEEL	--*-	Neuropeptide receptor 15		
Niben101Scf11379g00012.1	AT5G17660.1	****	tRNA (guanine-N-7) methyltransferase LENGTH=312	IPR003358 (tRNA (guanine-N-7) methyltransferase, Trmb type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006400 (tRNA modification), GO:0008176 (tRNA (guanine-N7-)-methyltransferase activity)
Niben101Scf01585g03006.1	AT4G19420.1	***-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf04657g07003.1	sp|A9LZN9|CLPP_NEIM0	*-*-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00383g00001.1	sp|Q9SD40|SRS1_ARATH	***-	Protein SHI RELATED SEQUENCE 1	IPR007818 (Protein of unknown function DUF702)	
Niben101Scf03671g02013.1	gb|KGD86012.1|	****	alkyl hydroperoxide reductase [Rhizobium sp. YS-1r]	IPR012336 (Thioredoxin-like fold)	GO:0016491 (oxidoreductase activity)
Niben101Scf09510g00011.1	ref|NP_001233978.1|	*-*-	extensin-like protein Dif54 precursor [Solanum lycopersicum] emb|CAA67814.1| extensin-like protein Dif54 [Solanum lycopersicum]		
Niben101Ctg16374g00004.1	sp|Q94B77|FH5_ARATH	*-*-	Formin-like protein 5	IPR015425 (Formin, FH2 domain)	
Niben101Scf05177g01007.1	sp|Q9C5D2|FBL4_ARATH	*-*-	F-box/LRR-repeat protein 4	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf02625g03002.1	AT3G48280.1	*-*-	cytochrome P450, family 71, subfamily A, polypeptide 25 LENGTH=490	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06976g01011.1	sp|Q39262|ZFP3_ARATH	*-*-	Zinc finger protein 3	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf01579g00002.1	sp|Q71V09|H4_CAPAN	***-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly), GO:0046982 (protein heterodimerization activity)
Niben101Scf02298g06006.1	tpg|DAA61025.1|	--*-	TPA: hypothetical protein ZEAMMB73_503663 [Zea mays]		
Niben101Scf07223g01009.1	sp|Q9SK74|C3H21_ARATH	***-	Zinc finger CCCH domain-containing protein 21	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf01219g04007.1	gb|ABG00880.1|	***-	disease resistance protein [Arabidopsis thaliana]		
Niben101Scf12540g00003.1	emb|CDY29265.1|	***-	BnaC01g19170D [Brassica napus]		
Niben101Scf01063g05019.1	AT1G53780.2	*-**	peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases LENGTH=620	IPR003959 (ATPase, AAA-type, core), IPR021911 (ATPase family AAA domain-containing protein 3, domain of unknown function DUF3523), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf03591g00005.1	gb|AIE42546.1|	*-*-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf05035g04012.1	sp|Q9YGL9|AT2A3_CHICK	*-**	Sarcoplasmic/endoplasmic reticulum calcium ATPase 3	IPR006068 (Cation-transporting P-type ATPase, C-terminal), IPR023298 (P-type ATPase,  transmembrane domain), IPR030330 (Sarcoplasmic/endoplasmic reticulum calcium ATPase 3)	GO:0005388 (calcium-transporting ATPase activity), GO:0005524 (ATP binding), GO:0005783 (endoplasmic reticulum), GO:0016021 (integral component of membrane), GO:0033017 (sarcoplasmic reticulum membrane), GO:0070588 (calcium ion transmembrane transport)
Niben101Scf05311g01009.1	sp|Q8LAZ7|CSN5B_ARATH	***-	COP9 signalosome complex subunit 5b	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain)	GO:0005515 (protein binding)
Niben101Scf02840g04002.1	sp|Q9C554|EXPA1_ARATH	***-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf01756g02025.1	sp|Q9WTY1|PDCD7_MOUSE	*-*-	Programmed cell death protein 7		
Niben101Scf07850g00001.1	ref|XP_003599715.1|	*-*-	F-box/LRR-repeat protein [Medicago truncatula]		
Niben101Scf04300g07002.1	sp|Q6NWI1|RSRC2_DANRE	--*-	Arginine/serine-rich coiled-coil protein 2	IPR028124 (Small acidic protein-like domain)	
Niben101Scf03035g00019.1	sp|C6DF75|HIS8_PECCP	*-**	Histidinol-phosphate aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02736g02001.1	ref|NP_001148114.1|	****	transferase, transferring glycosyl groups precursor [Zea mays] gb|ACG29772.1| transferase, transferring glycosyl groups [Zea mays]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf00786g00001.1	AT5G41050.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=172	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf00167g03013.1	sp|Q5LGR6|RL27_BACFN	*-*-	50S ribosomal protein L27	IPR001684 (Ribosomal protein L27)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf13703g03006.1	sp|Q9MA60|FH11_ARATH	*-*-	Formin-like protein 11	IPR015425 (Formin, FH2 domain)	
Niben101Scf05035g02006.1	sp|Q811D2|ANR26_MOUSE	*-*-	Ankyrin repeat domain-containing protein 26	IPR000641 (CbxX/CfqX), IPR020683 (Ankyrin repeat-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf01082g08003.1	sp|Q9LW48|ERF5_NICSY	*-**	Ethylene-responsive transcription factor 5	IPR001471 (AP2/ERF domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01711g01003.1	AT5G55690.1	*-*-	MADS-box transcription factor family protein LENGTH=277	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01269g00003.1	emb|CDY17280.1|	***-	BnaA10g09140D [Brassica napus]		
Niben101Scf11110g00021.1	sp|Q6GQE1|T184C_XENLA	***-	Transmembrane protein 184C	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184)	
Niben101Scf02077g05007.1	sp|Q27GI3|NAT6_ARATH	****	Nucleobase-ascorbate transporter 6	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf09004g00019.1	AT2G26980.4	****	CBL-interacting protein kinase 3 LENGTH=451	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf23954g00005.1	AT3G53710.1	*-*-	ARF-GAP domain 6 LENGTH=459		
Niben101Scf03436g01020.1	sp|Q7XRX1|RFC4_ORYSJ	*-**	Replication factor C subunit 4	IPR008921 (DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0006260 (DNA replication)
Niben101Scf09284g00001.1	sp|Q8CGC6|RBM28_MOUSE	--**	RNA-binding protein 28	IPR001876 (Zinc finger, RanBP2-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Ctg09615g00003.1	AT2G26180.1	*-*-	IQ-domain 6 LENGTH=416		
Niben101Scf00474g07001.1	sp|C0MAH5|TGT_STRE4	****	Queuine tRNA-ribosyltransferase	IPR002616 (tRNA-guanine(15) transglycosylase-like)	GO:0006400 (tRNA modification), GO:0008033 (tRNA processing), GO:0008479 (queuine tRNA-ribosyltransferase activity), GO:0008616 (queuosine biosynthetic process)
Niben101Scf03959g00005.1	sp|Q32L78|TPC6B_BOVIN	***-	Trafficking protein particle complex subunit 6B	IPR007194 (Transport protein particle (TRAPP) component), IPR024096 (NO signalling/Golgi transport  ligand-binding domain)	
Niben101Scf07880g03019.1	gb|ADK13068.1|	*-*-	conserved hypothetical protein 11 [Hevea brasiliensis]		
Niben101Scf04133g02006.1	sp|P0DI32|CASP1_TARKO	***-	Casparian strip membrane protein 1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf00224g00005.1	sp|Q70Z17|NAP1C_TOBAC	*-*-	Nucleosome assembly protein 1;3		
Niben101Scf01765g03008.1	AT5G18030.1	***-	SAUR-like auxin-responsive protein family LENGTH=88	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf10375g01011.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06432g03016.1	emb|CDY70669.1|	*-*-	BnaCnng69290D [Brassica napus]		
Niben101Scf10241g02007.1			Unknown protein		
Niben101Scf01028g01003.1	sp|P93003|TFL1_ARATH	***-	Protein TERMINAL FLOWER 1	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf00439g10055.1	emb|CDX74734.1|	***-	BnaA05g04800D [Brassica napus]	IPR009902 (Protein of unknown function DUF1442), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Ctg06127g00002.1	sp|Q0WKZ3|PP105_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf18121g00012.1	sp|Q9LN01|PPR21_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf08263g01012.1			Unknown protein		
Niben101Scf05183g04010.1	emb|CDY45072.1|	***-	BnaA02g05040D [Brassica napus]	IPR007650 (Zf-FLZ domain)	
Niben101Scf17872g00013.1	AT3G58630.1	*-*-	sequence-specific DNA binding transcription factors LENGTH=321		
Niben101Scf02552g00006.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00369g02017.1	ref|NP_064104.1|	--*-	orf110b gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] ref|YP_004222346.1| hypothetical protein BevumaM_p112 [Beta vulgaris subsp. maritima] ref|YP_004842151.1| hypothetical protein BemaM_p107 [Beta macrocarpa] dbj|BAA99498.1| orf110b [Beta vulgaris subsp. vulgaris] emb|CBJ14076.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBJ17566.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBJ20714.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBX24956.1| hypothetical protein [Beta macrocarpa] emb|CBL51962.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp. maritima]		
Niben101Scf03648g01008.1	prf||1211235CM	*-**	NADH dehydrogenase 5-like ORF 710	IPR002128 (NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminal)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf02663g00023.1	gb|AIU50623.1|	--*-	ATP synthase protein I-related protein, partial [Theobroma cacao]		
Niben101Scf00249g01002.1	AT1G74300.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=346	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04860g00001.1	sp|Q8IZU2|WDR17_HUMAN	--*-	WD repeat-containing protein 17	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05053g00013.1	AT5G63190.1	*-*-	MA3 domain-containing protein LENGTH=702		
Niben101Scf03164g04011.1	sp|Q01440|GTR1_LEIDO	*-**	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf12653g00012.1	sp|Q8SWN8|ACT_ENCCU	****	Actin	IPR004000 (Actin family)	GO:0005524 (ATP binding), GO:0005856 (cytoskeleton), GO:0005885 (Arp2/3 protein complex), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf03335g00005.1	sp|Q9CAM8|PP100_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06782g00003.1	sp|B0TQ02|MNMA_SHEHH	****	tRNA-specific 2-thiouridylase MnmA	IPR004506 (tRNA-specific 2-thiouridylase), IPR023382 (Adenine nucleotide alpha hydrolase-like domains)	GO:0008033 (tRNA processing), GO:0016740 (transferase activity), GO:0016783 (sulfurtransferase activity)
Niben101Scf00313g08016.1	emb|CAC86897.1|	***-	allene oxide synthase [Medicago truncatula] gb|KEH40077.1| cytochrome P450 family fatty acid hydroperoxide lyase [Medicago truncatula]	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02543g01002.1	AT4G36590.1	***-	MADS-box transcription factor family protein LENGTH=248	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf05229g04025.1	sp|P49214|RS9_TOBAC	*-*-	40S ribosomal protein S9	IPR022801 (Ribosomal protein S4/S9)	
Niben101Scf15536g01010.1	sp|B4RD45|ATPA_PHEZH	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf06684g03001.1	sp|Q9LNU6|PPR53_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01020g06001.1	sp|B0C431|RS11_ACAM1	*-*-	30S ribosomal protein S11	IPR001971 (Ribosomal protein S11)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07945g00008.1	sp|Q8N9R8|SCAI_HUMAN	***-	Protein SCAI	IPR022709 (Protein SCAI)	GO:0003714 (transcription corepressor activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf04526g02008.1	gb|AAG37447.1|	*-*-	seed maturation protein LEA 4 [Glycine tomentella]	IPR005513 (Late embryogenesis abundant protein, LEA-25/LEA-D113)	GO:0009790 (embryo development)
Niben101Scf00213g00001.1	sp|C0QYU9|ARGB_BRAHW	****	Acetylglutamate kinase	IPR001048 (Aspartate/glutamate/uridylate kinase), IPR001057 (Glutamate/acetylglutamate kinase), IPR004662 (Acetylglutamate kinase)	GO:0003991 (acetylglutamate kinase activity), GO:0004349 (glutamate 5-kinase activity), GO:0005737 (cytoplasm), GO:0006526 (arginine biosynthetic process), GO:0006561 (proline biosynthetic process)
Niben101Scf01274g07003.1	sp|B3R0E7|EFP_PHYMT	--*-	Elongation factor P		
Niben101Scf03864g02014.1	gb|AAQ05799.1|AF478458_1	*-**	DNA binding protein Rav [Capsicum annuum]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Ctg14115g00001.1	sp|O75494|SRS10_HUMAN	*-*-	Serine/arginine-rich splicing factor 10	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00135g04013.1	AT1G75590.1	***-	SAUR-like auxin-responsive protein family LENGTH=154	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03390g02006.1	ref|XP_003597012.1|	--*-	TdcA1-ORF2 protein [Medicago truncatula]		
Niben101Scf13926g00010.1	AT5G46090.1	***-	Protein of unknown function (DUF679) LENGTH=214	IPR007770 (Protein of unknown function DUF679)	
Niben101Scf01584g00010.1	sp|Q8RG98|PFKA_FUSNN	*-**	ATP-dependent 6-phosphofructokinase	IPR000023 (Phosphofructokinase domain)	GO:0003872 (6-phosphofructokinase activity), GO:0006096 (glycolytic process)
Niben101Scf08470g03005.1			Unknown protein		
Niben101Scf02468g09003.1	ref|XP_003597012.1|	*-*-	TdcA1-ORF2 protein [Medicago truncatula]		
Niben101Scf11139g00001.1	sp|Q6K7E6|ERF1_ORYSJ	****	Ethylene-responsive transcription factor 1	IPR001471 (AP2/ERF domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07528g01011.1	sp|Q9Y7P0|RISA_SCHPO	****	Riboflavin synthase	IPR001783 (Lumazine-binding protein), IPR023366 (ATP synthase subunit alpha-like domain), IPR026017 (Lumazine-binding domain)	GO:0004746 (riboflavin synthase activity), GO:0009231 (riboflavin biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf30302g00003.1	sp|Q9V109|RS7_PYRAB	*-*-	30S ribosomal protein S7	IPR000235 (Ribosomal protein S5/S7), IPR023798 (Ribosomal protein S7 domain)	GO:0006412 (translation)
Niben101Scf00854g11104.1	gb|AHB35405.1|	--*-	cytochrome c oxidase subunit 1 (mitochondrion) [Pyropia perforata]		
Niben101Scf05698g01016.1	sp|B8G4Q6|FTSH_CHLAD	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR007330 (MIT), IPR015415 (Vps4 oligomerisation, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf04327g02019.1			Unknown protein		
Niben101Scf18182g00003.1	gb|AAO21303.1|	***-	MADS box protein [Nicotiana tabacum]		
Niben101Scf06101g02006.1	sp|A4XI37|EFTU_CALS8	*-*-	Elongation factor Tu	IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Ctg13866g00001.1	emb|CAA06242.1|	***-	P18 protein [Nicotiana alata]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf06113g01011.1	AT1G61760.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=224	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf03872g02013.1	sp|P40024|ARB1_YEAST	****	ABC transporter ATP-binding protein ARB1	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf03407g02010.1	AT1G52855.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=68		
Niben101Scf13995g01013.1	sp|Q8VWK4|TRB1_ARATH	****	Telomere repeat-binding factor 1	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf08462g01009.1			Unknown protein		
Niben101Scf17125g00001.1	sp|P0C8Z7|GDL91_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf03422g02006.1	sp|Q9CA86|PEX2_ARATH	*-*-	Peroxisome biogenesis protein 2		
Niben101Scf02290g02012.1	sp|Q9STF0|LRKS3_ARATH	--*-	Receptor like protein kinase S.3		
Niben101Scf00362g00005.1	sp|Q99758|ABCA3_HUMAN	*-*-	ATP-binding cassette sub-family A member 3	IPR026082 (ABC transporter A, ABCA)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf01234g01012.1	sp|Q9M0M5|SCL13_ARATH	***-	Scarecrow-like protein 13	IPR005202 (Transcription factor GRAS), IPR030005 (Scarecrow-like protein 13)	
Niben101Scf02381g04006.1	AT5G16120.2	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=369	IPR022742 (Putative lysophospholipase), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03925g00001.1			Unknown protein		
Niben101Scf01777g00009.1	sp|P25083|ADT1_SOLTU	*-**	ADP,ATP carrier protein, mitochondrial	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf06898g02008.1	sp|Q5ZM25|OLA1_CHICK	*-*-	Obg-like ATPase 1	IPR012675 (Beta-grasp domain)	
Niben101Scf02297g09012.1	sp|Q945T0|RALF_TOBAC	***-	Rapid alkalinization factor	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf02197g02001.1	sp|Q54NP8|KIF4_DICDI	*-**	Kinesin-related protein 4	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00857g01003.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08128g00018.1	ref|XP_003625024.1|	*-*-	Protein WAX2 [Medicago truncatula] gb|ABN07985.1| Sterol desaturase [Medicago truncatula] gb|AES81242.1| fatty acid hydroxylase superfamily protein [Medicago truncatula]	IPR021940 (Uncharacterised domain Wax2, C-terminal)	
Niben101Scf00850g00008.1	AT1G14020.1	***-	O-fucosyltransferase family protein LENGTH=499	IPR011992 (EF-hand domain pair), IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf03249g01011.1	AT2G42850.1	***-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01795g04027.1	sp|Q9LKR8|RAF1_ARATH	*-*-	Rubisco accumulation factor 1, chloroplastic		
Niben101Scf09928g01021.1	sp|P17156|HSP72_MOUSE	***-	Heat shock-related 70 kDa protein 2	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf03282g08004.1	emb|CDX82852.1|	-**-	BnaC01g13020D [Brassica napus]		
Niben101Scf15349g00002.1	sp|A3KQ55|MEPCE_DANRE	*-*-	7SK snRNA methylphosphate capping enzyme	IPR010675 (Bicoid-interacting 3), IPR024160 (Bin3-type S-adenosyl-L-methionine binding domain), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf01953g01004.1	sp|P85971|6PGL_RAT	*-*-	6-phosphogluconolactonase	IPR006148 (Glucosamine/galactosamine-6-phosphate isomerase)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf08819g01013.1	sp|Q6DJC8|TM53B_XENLA	***-	Transmembrane protein 53-B	IPR008547 (Protein of unknown function DUF829, TMEM53), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02864g11010.1	sp|Q05980|DNAJ_BRUO2	*-*-	Chaperone protein DnaJ	IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf02348g05009.1	gb|AID60104.1|	***-	At4g33800-like protein [Brassica napus]		
Niben101Scf07465g01016.1	sp|Q9FXI5|IQD32_ARATH	***-	Protein IQ-DOMAIN 32	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf02751g05008.1	ref|XP_007018786.1|	***-	E3 ubiquitin-protein ligase HUWE1, putative [Theobroma cacao] gb|EOY16011.1| E3 ubiquitin-protein ligase HUWE1, putative [Theobroma cacao]	IPR001202 (WW domain)	GO:0005515 (protein binding)
Niben101Scf01025g01001.1	sp|P36627|BYR3_SCHPO	****	Cellular nucleic acid-binding protein homolog	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf09584g00007.1	ref|XP_003611031.1|	--*-	Apospory-associated protein C [Medicago truncatula]		
Niben101Scf00063g02006.1	sp|Q9MA98|ERCC1_ARATH	****	DNA excision repair protein ERCC-1	IPR004579 (DNA repair protein rad10), IPR010994 (RuvA domain 2-like), IPR011335 (Restriction endonuclease  type II-like)	GO:0003684 (damaged DNA binding), GO:0004519 (endonuclease activity), GO:0005634 (nucleus), GO:0006281 (DNA repair)
Niben101Scf05822g04008.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00231g07029.1	AT1G23710.1	***-	Protein of unknown function (DUF1645) LENGTH=295	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf01498g06007.1	sp|Q6ZRF8|RN207_HUMAN	--*-	RING finger protein 207	IPR010652 (Protein of unknown function DUF1232), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf05177g00009.1	gb|ABI34321.1|	--*-	RNase H family protein [Solanum demissum]		
Niben101Scf05551g03001.1	sp|O74630|ATM_SCHPO	*-*-	Serine/threonine-protein kinase tel1	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf11384g00027.1	sp|Q01667|CAB6_ARATH	***-	Chlorophyll a-b binding protein 6, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf16044g01002.1			Unknown protein		
Niben101Scf03046g04013.1	gb|ABN08498.1|	***-	Protein of unknown function DUF604 [Medicago truncatula]	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf00099g00002.1	sp|O15514|RPB4_HUMAN	****	DNA-directed RNA polymerase II subunit RPB4	IPR005574 (RNA polymerase II, Rpb4)	GO:0000166 (nucleotide binding), GO:0003824 (catalytic activity), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0044237 (cellular metabolic process)
Niben101Scf00966g01006.1	AT5G39785.2	***-	Protein of unknown function (DUF1666) LENGTH=607	IPR008195 (Ribosomal protein L34Ae), IPR012870 (Protein of unknown function DUF1666)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf15823g00012.1			Unknown protein		
Niben101Scf00369g14001.1	sp|P78968|PPZ_SCHPO	***-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf00478g00004.1	sp|Q5PPV4|CHAC2_XENLA	***-	Cation transport regulator-like protein 2	IPR006840 (ChaC-like protein), IPR013024 (Butirosin biosynthesis, BtrG-like)	
Niben101Scf03052g00011.1	sp|P23137|GRP1_TOBAC	--*-	Glycine-rich protein	IPR010800 (Glycine rich protein)	
Niben101Scf02631g00008.1	ref|XP_007042434.1|	***-	Cold regulated gene 27, putative isoform 1 [Theobroma cacao] gb|EOX98265.1| Cold regulated gene 27, putative isoform 1 [Theobroma cacao]		
Niben101Scf00276g00010.1	ref|XP_003591832.1|	--**	Transcription factor bHLH30 [Medicago truncatula] gb|AES62083.1| basic helix loop helix (BHLH) DNA-binding family protein [Medicago truncatula]	IPR002912 (ACT domain), IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0046983 (protein dimerization activity)
Niben101Scf01787g00081.1	sp|P93311|RM02_ARATH	*-*-	60S ribosomal protein L2, mitochondrial		
Niben101Scf01795g17007.1	sp|Q84K00|NAC78_ARATH	*-*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05158g01014.1	AT1G15550.1	***-	gibberellin 3-oxidase 1 LENGTH=358	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf05605g00042.1	ATMG00090.1	*-**	structural constituent of ribosome;protein binding chrM:25482-28733 REVERSE LENGTH=556	IPR000114 (Ribosomal protein L16), IPR001351 (Ribosomal protein S3, C-terminal), IPR016180 (Ribosomal protein L10e/L16)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf06112g02015.1	sp|C4XGC2|NQOR_DESMR	***-	NAD(P)H dehydrogenase (quinone)	IPR010089 (Flavoprotein WrbA), IPR029039 (Flavoprotein-like)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0045892 (negative regulation of transcription, DNA-templated)
Niben101Scf00929g03010.1	sp|Q8S307|BZR1_ARATH	***-	Protein BRASSINAZOLE-RESISTANT 1	IPR008540 (BZR1, transcriptional repressor)	
Niben101Ctg15435g00001.1	sp|Q6FRB7|IPYR_CANGA	*-**	Inorganic pyrophosphatase	IPR008162 (Inorganic pyrophosphatase)	GO:0000287 (magnesium ion binding), GO:0004427 (inorganic diphosphatase activity), GO:0005737 (cytoplasm), GO:0006796 (phosphate-containing compound metabolic process)
Niben101Scf02387g03011.1	sp|Q3UQU0|BRD9_MOUSE	*-*-	Bromodomain-containing protein 9	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Ctg07479g00001.1	ref|NP_001077454.1|	*-*-	MATH domain-containing protein [Arabidopsis thaliana] gb|AEE27681.1| MATH domain-containing protein [Arabidopsis thaliana]		
Niben101Scf02790g05008.1	sp|Q2JN82|PSBX_SYNJB	--**	Photosystem II reaction center X protein	IPR009518 (Photosystem II PsbX)	GO:0009523 (photosystem II), GO:0015979 (photosynthesis), GO:0016020 (membrane)
Niben101Scf04283g08014.1			Unknown protein		
Niben101Scf09670g01005.1	sp|P50162|TRN1_DATST	****	Tropinone reductase 1	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02831g08009.1	sp|Q7MF12|BETA_VIBVY	****	Oxygen-dependent choline dehydrogenase	IPR012132 (Glucose-methanol-choline oxidoreductase)	GO:0006066 (alcohol metabolic process), GO:0008812 (choline dehydrogenase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01980g00002.1	sp|C3P8L9|DNAJ_BACAA	--*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf00017g00004.1	sp|Q9M2A1|PP263_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02712g00001.1			Unknown protein		
Niben101Scf04570g02016.1	sp|Q9V464|ASF1_DROME	***-	Histone chaperone asf1	IPR006818 (Histone chaperone, ASF1-like)	GO:0005634 (nucleus), GO:0006333 (chromatin assembly or disassembly)
Niben101Scf04292g12001.1	sp|Q9SF29|SYP71_ARATH	***-	Syntaxin-71	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf01572g01006.1	sp|Q9LYW0|Y5325_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	
Niben101Scf02074g01011.1	ref|XP_003588337.1|	*-*-	Ribosomal protein S10 [Medicago truncatula]		
Niben101Scf07470g00009.1	sp|Q5BCC6|BGLC_EMENI	*-*-	Beta-glucosidase C	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04964g02005.1	sp|P93472|DIM_PEA	****	Delta(24)-sterol reductase	IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03445g00008.1	AT3G48200.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 210 Blast hits to 148 proteins in 42 species: Archae - 0; Bacteria - 118; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). LENGTH=1088		
Niben101Scf02307g01003.1	sp|Q9FII2|FK117_ARATH	***-	F-box/kelch-repeat protein	IPR001810 (F-box domain), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf07925g00033.1			Unknown protein		
Niben101Scf06976g00014.1	sp|P52948|NUP98_HUMAN	*-**	Nuclear pore complex protein Nup98-Nup96	IPR007230 (Peptidase S59, nucleoporin), IPR021967 (Nuclear protein 96)	GO:0005643 (nuclear pore), GO:0006810 (transport)
Niben101Ctg15208g00002.1			Unknown protein		
Niben101Scf03702g04011.1			Unknown protein		
Niben101Scf12874g00009.1	AT4G37790.1	*-*-	Homeobox-leucine zipper protein family LENGTH=278	IPR003106 (Leucine zipper, homeobox-associated), IPR006712 (HD-ZIP protein, N-terminal), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02219g01005.1	sp|Q803I2|ERGI3_DANRE	*-*-	Endoplasmic reticulum-Golgi intermediate compartment protein 3	IPR012936 (Endoplasmic reticulum vesicle transporter, C-terminal)	
Niben101Scf01009g02004.1	ref|NP_568106.1|	***-	rib [Arabidopsis thaliana]		
Niben101Scf00644g00011.1	sp|E2RQ15|RAB25_CANFA	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf04180g01010.1	sp|F4HQX1|JAL3_ARATH	***-	Jacalin-related lectin 3	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf03264g02005.1			Unknown protein		
Niben101Scf08111g03006.1	gb|AAV92903.1|	***-	Avr9/Cf-9 rapidly elicited protein 236, partial [Nicotiana tabacum]		
Niben101Scf00797g15002.1	sp|O22193|PUB4_ARATH	***-	U-box domain-containing protein 4	IPR003613 (U box domain), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf01505g02004.1	sp|Q7MF12|BETA_VIBVY	****	Oxygen-dependent choline dehydrogenase	IPR012132 (Glucose-methanol-choline oxidoreductase)	GO:0006066 (alcohol metabolic process), GO:0008812 (choline dehydrogenase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09097g00006.1	AT5G47860.1	***-	Protein of unknown function (DUF1350) LENGTH=431	IPR010765 (Protein of unknown function DUF1350)	
Niben101Scf02680g02016.1	sp|Q680Q4|SIZ1_ARATH	*-*-	E3 SUMO-protein ligase SIZ1	IPR003034 (SAP domain)	
Niben101Scf01146g03011.1	gb|AAC95212.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]	IPR018289 (MULE transposase domain)	
Niben101Scf25430g00015.1	AT1G53310.1	****	phosphoenolpyruvate carboxylase 1 LENGTH=967	IPR021135 (Phosphoenolpyruvate carboxylase)	GO:0003824 (catalytic activity), GO:0006099 (tricarboxylic acid cycle), GO:0008964 (phosphoenolpyruvate carboxylase activity), GO:0015977 (carbon fixation)
Niben101Scf02450g02002.1	dbj|BAD33450.1|	****	GTP-binding protein-like [Oryza sativa Japonica Group] dbj|BAD33726.1| GTP-binding protein-like [Oryza sativa Japonica Group] dbj|BAH01464.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEC84452.1| hypothetical protein OsI_31074 [Oryza sativa Indica Group]	IPR006073 (GTP binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Ctg06012g00001.1			Unknown protein		
Niben101Scf07304g03007.1	sp|Q9C8K7|FBK21_ARATH	*-*-	F-box/kelch-repeat protein	IPR000014 (PAS domain), IPR001810 (F-box domain), IPR015915 (Kelch-type beta propeller)	GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0007165 (signal transduction)
Niben101Scf06910g04005.1	sp|P0CE41|HAP1_YEAST	--*-	Heme-responsive zinc finger transcription factor HAP1		
Niben101Scf07554g02009.1	sp|P55088|AQP4_MOUSE	***-	Aquaporin-4	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00870g08002.1	AT1G72470.1	****	exocyst subunit exo70 family protein D1 LENGTH=633	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf05801g00006.1	sp|Q28H21|PCGF1_XENTR	*-*-	Polycomb group RING finger protein 1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf02298g03008.1	AT1G61740.1	***-	Sulfite exporter TauE/SafE family protein LENGTH=458	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf03243g00004.1	sp|Q9XJ60|MAD50_ORYSJ	*-*-	MADS-box transcription factor 50	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf02056g02001.1	emb|CDY23208.1|	*-*-	BnaA04g05510D [Brassica napus]		
Niben101Scf02706g01001.1	sp|B5YID4|SYC_THEYD	****	Cysteine--tRNA ligase	IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding), IPR024909 (Cysteinyl-tRNA synthetase/mycothiol ligase)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004817 (cysteine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006423 (cysteinyl-tRNA aminoacylation)
Niben101Scf01269g03002.1	AT5G54880.1	*-*-	DTW domain-containing protein LENGTH=394	IPR005636 (DTW)	
Niben101Scf02279g05008.1	sp|P52551|MYBB_XENLA	*-*-	Myb-related protein B	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00833g04005.1	sp|Q6BSS8|APTH1_DEBHA	--*-	Acyl-protein thioesterase 1	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf38030g00002.1	ref|WP_025946800.1|	***-	MULTISPECIES: Fe-S-cluster oxidoreductase [Prochlorococcus]	IPR005358 (Putative zinc- or iron-chelating domain containing protein)	
Niben101Scf08566g05001.1	sp|Q84TH4|SR45A_ARATH	*-*-	Serine/arginine-rich splicing factor SR45a	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06382g01014.1	gb|ABA54794.1|	-**-	embryo-abundant protein [Picea glauca]	IPR002902 (Gnk2-homologous domain)	
Niben101Scf13828g01008.1	AT5G17370.1	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=529	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Ctg16428g00003.1	sp|O48850|VA725_ARATH	****	Vesicle-associated membrane protein 725	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf01487g02009.1			Unknown protein	IPR023795 (Serpin, conserved site)	
Niben101Scf06394g04022.1	sp|Q9ZU49|LPP1_ARATH	***-	Lipid phosphate phosphatase 1	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase), IPR028681 (Lipid phosphate phosphatase, plant)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Ctg12612g00003.1			Unknown protein		
Niben101Scf06249g04003.1	AT3G21270.1	*-*-	DOF zinc finger protein 2 LENGTH=204	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00159g05004.1	sp|Q9ZU91|E133_ARATH	***-	Glucan endo-1,3-beta-glucosidase 3	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00870g15022.1	sp|Q5XEM9|ALFL5_ARATH	***-	PHD finger protein ALFIN-LIKE 5	IPR021998 (Alfin)	GO:0006355 (regulation of transcription, DNA-templated), GO:0042393 (histone binding)
Niben101Scf03285g00003.1	AT1G34490.1	*-*-	MBOAT (membrane bound O-acyl transferase) family protein LENGTH=337		
Niben101Scf03444g04026.1	emb|CDY36373.1|	***-	BnaC04g32810D [Brassica napus]		
Niben101Scf02042g03036.1	AT2G47830.1	****	Cation efflux family protein LENGTH=471	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain), IPR027470 (Cation efflux protein cytoplasmic domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00638g01001.1	sp|Q9NSI2|F207A_HUMAN	--*-	Protein FAM207A		
Niben101Scf05368g00004.1	sp|Q9XGX7|TIM9_ORYSJ	***-	Mitochondrial import inner membrane translocase subunit Tim9	IPR004217 (Tim10/DDP family zinc finger)	
Niben101Scf01145g00010.1			Unknown protein		
Niben101Scf02400g02012.1	AT2G44810.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=357	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf02077g13003.1	ref|XP_002511317.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF51919.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02270g01006.1	sp|Q8WWY3|PRP31_HUMAN	*-*-	U4/U6 small nuclear ribonucleoprotein Prp31	IPR002687 (Nop domain), IPR027105 (U4/U6 small nuclear ribonucleoprotein Prp31)	GO:0000244 (spliceosomal tri-snRNP complex assembly), GO:0000398 (mRNA splicing, via spliceosome), GO:0046540 (U4/U6 x U5 tri-snRNP complex)
Niben101Scf05203g10008.1	gb|ABD16150.1|	*-**	self-incompatibility ribonuclease [Lycium parishii]	IPR001568 (Ribonuclease T2-like)	GO:0003723 (RNA binding), GO:0033897 (ribonuclease T2 activity)
Niben101Scf12623g00008.1	sp|B7GIU0|URK_ANOFW	****	Uridine kinase	IPR006082 (Phosphoribulokinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0008152 (metabolic process), GO:0008974 (phosphoribulokinase activity), GO:0016301 (kinase activity)
Niben101Scf11136g00002.1	sp|Q719L8|SL_CRODU	--*-	Snaclec crotocetin		
Niben101Scf01951g00027.1	sp|Q8U4N1|RPOL_PYRFU	-***	DNA-directed RNA polymerase subunit L	IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf07607g00002.1	sp|Q94B71|OBE3_ARATH	***-	Protein OBERON 3	IPR004082 (Protein OBERON)	
Niben101Scf05308g01008.1	AT3G02100.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=464	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04018g06002.1	sp|Q9SKI4|RFA1A_ARATH	****	Replication protein A 70 kDa DNA-binding subunit A	IPR004591 (Replication factor A protein 1)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0006310 (DNA recombination)
Niben101Scf05575g03003.1	sp|B1WUT9|GLO2_CYAA5	*-*-	Hydroxyacylglutathione hydrolase	IPR001279 (Beta-lactamase-like)	
Niben101Scf02280g01012.1	gb|AAG50965.1|AC073395_7	****	integral membrane protein, putative; 85705-84183 [Arabidopsis thaliana]	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf18306g00001.1	gb|KEH35704.1|	*-*-	tapetum determinant protein [Medicago truncatula]		
Niben101Scf06829g02007.1	sp|Q28559|ACACA_SHEEP	*-**	Acetyl-CoA carboxylase 1	IPR004549 (Acetyl-CoA carboxylase, biotin carboxylase), IPR011761 (ATP-grasp fold), IPR016185 (Pre-ATP-grasp domain)	GO:0003824 (catalytic activity), GO:0004075 (biotin carboxylase activity), GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016874 (ligase activity), GO:0046872 (metal ion binding)
Niben101Scf00160g10004.1	ref|XP_007021525.1|	--*-	MATE efflux family protein ALF5 [Theobroma cacao] gb|EOY13050.1| MATE efflux family protein ALF5 [Theobroma cacao]		
Niben101Scf05269g03029.1	ref|NP_001052354.1|	***-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf05689g02008.1	ref|XP_003628497.1|	*-*-	NADH dehydrogenase subunit F [Medicago truncatula] gb|AET02973.1| NADH-ubiquinone oxidoreductase (complex I), chain 5 [Medicago truncatula]		
Niben101Scf07184g05002.1	AT3G06550.2	***-	O-acetyltransferase family protein LENGTH=568	IPR012419 (Cas1p 10 TM acyl transferase domain)	
Niben101Scf05029g00004.1	sp|Q0GZS3|USP_CUCME	***-	UDP-sugar pyrophosphorylase	IPR002618 (UTP--glucose-1-phosphate uridylyltransferase family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0008152 (metabolic process), GO:0070569 (uridylyltransferase activity)
Niben101Scf08918g03009.1			Unknown protein		
Niben101Scf04395g00021.1	tpg|DAA58261.1|	--**	TPA: 3-5 exonuclease/ nucleic acid binding protein [Zea mays]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf06939g00006.1	sp|Q41001|BCP_PEA	***-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf12266g09003.1	sp|A2BVK6|CHLB_PROM5	--*-	Light-independent protochlorophyllide reductase subunit B		
Niben101Scf02319g06011.1	sp|Q54R84|AP4B_DICDI	****	AP-4 complex subunit beta	IPR012295 (Beta2-adaptin/TBP, C-terminal domain), IPR015151 (Beta-adaptin appendage, C-terminal subdomain), IPR016024 (Armadillo-type fold), IPR026739 (AP complex subunit beta)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030131 (clathrin adaptor complex)
Niben101Scf08272g00021.1	sp|Q9LTQ0|RTL2_ARATH	*-**	Ribonuclease 3-like protein 2	IPR000999 (Ribonuclease III domain), IPR001650 (Helicase, C-terminal), IPR003100 (PAZ domain), IPR005034 (Dicer dimerisation domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006396 (RNA processing), GO:0016891 (endoribonuclease activity, producing 5'-phosphomonoesters)
Niben101Scf02929g04040.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf02632g00018.1	sp|Q9SLG0|NFYB1_ARATH	--*-	Nuclear transcription factor Y subunit B-1	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf14041g01005.1	AT1G21640.2	****	NAD kinase 2 LENGTH=999	IPR002504 (Inorganic polyphosphate/ATP-NAD kinase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0003951 (NAD+ kinase activity), GO:0006741 (NADP biosynthetic process), GO:0008152 (metabolic process), GO:0019674 (NAD metabolic process)
Niben101Scf09678g00004.1	sp|Q9NPJ3|ACO13_HUMAN	--*-	Acyl-coenzyme A thioesterase 13	IPR029069 (HotDog domain)	
Niben101Scf00307g01033.1	sp|Q54MZ4|MCFB_DICDI	*-*-	Mitochondrial substrate carrier family protein B	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf02828g03013.1	AT1G71090.1	***-	Auxin efflux carrier family protein LENGTH=457	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf04925g00008.1	ref|XP_002515340.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF46789.1| conserved hypothetical protein [Ricinus communis]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf06743g00013.1	sp|Q9BRU9|UTP23_HUMAN	***-	rRNA-processing protein UTP23 homolog	IPR006984 (rRNA-processing protein Fcf1/Utp23), IPR029060 (PIN domain-like)	GO:0032040 (small-subunit processome)
Niben101Scf02634g03001.1	sp|O59351|RNH2_PYRHO	*-**	Ribonuclease HII	IPR001352 (Ribonuclease HII/HIII), IPR012337 (Ribonuclease H-like domain), IPR023160 (Ribonuclease HII, helix-loop-helix cap domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf05955g01005.1			Unknown protein		
Niben101Scf03832g02016.1	AT4G32390.1	***-	Nucleotide-sugar transporter family protein LENGTH=350	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf02182g19003.1	sp|Q58D06|WDR74_BOVIN	*-*-	WD repeat-containing protein 74	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03827g01009.1	sp|F1MK05|RN170_BOVIN	***-	E3 ubiquitin-protein ligase RNF170	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf09403g00005.1	sp|Q3SZF8|SMD2_BOVIN	****	Small nuclear ribonucleoprotein Sm D2	IPR010920 (Like-Sm (LSM) domain), IPR027248 (Small nuclear ribonucleoprotein Sm D2)	GO:0008380 (RNA splicing), GO:0030532 (small nuclear ribonucleoprotein complex)
Niben101Scf01706g00010.1	sp|B7IE23|PNP_THEAB	--*-	Polyribonucleotide nucleotidyltransferase	IPR015847 (Exoribonuclease, phosphorolytic domain 2), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027408 (PNPase/RNase PH domain)	
Niben101Scf04113g01003.1	sp|Q9FJZ3|MAN7_ARATH	***-	Mannan endo-1,4-beta-mannosidase 7	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf22035g00001.1	sp|Q6GG09|KPYK_STAAR	****	Pyruvate kinase	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf01225g04029.1	sp|Q0WNP3|PP319_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04570g06003.1	sp|Q3AMN6|RS3_SYNSC	***-	30S ribosomal protein S3	IPR001351 (Ribosomal protein S3, C-terminal), IPR009019 (K homology domain, prokaryotic type), IPR015946 (K homology domain-like, alpha/beta)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01486g03008.1	sp|P49027|GBLPA_ORYSJ	--**	Guanine nucleotide-binding protein subunit beta-like protein A	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05615g02008.1	gb|AEB40577.1|	*-*-	cytochrome P450 subunit CYP72A13 [Helianthus annuus]		
Niben101Scf08606g00015.1	sp|Q9C8P8|BH080_ARATH	--*-	Transcription factor bHLH80		
Niben101Scf00446g07003.1	AT4G04650.1	*-*-	RNA-directed DNA polymerase (reverse transcriptase)-related family protein LENGTH=332	IPR026960 (Reverse transcriptase zinc-binding domain)	
Niben101Scf03735g01006.1	sp|O48822|Y2794_ARATH	*-*-	WEB family protein		
Niben101Scf14542g00033.1	sp|Q9FJR0|RENT1_ARATH	****	Regulator of nonsense transcripts 1 homolog	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR018999 (RNA helicase UPF1, UPF2-interacting domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000184 (nuclear-transcribed mRNA catabolic process, nonsense-mediated decay), GO:0003677 (DNA binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008270 (zinc ion binding)
Niben101Scf02566g04001.1	AT4G08850.1	****	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01440g04009.1	sp|Q94K41|SDR3B_ARATH	****	Short-chain dehydrogenase reductase 3b	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf00525g03005.1	sp|P93328|NO16_MEDTR	-**-	Early nodulin-16	IPR008972 (Cupredoxin)	
Niben101Scf13522g00002.1			Unknown protein		
Niben101Scf03810g08002.1	sp|Q3YWX1|RSMB_SHISS	*-**	Ribosomal RNA small subunit methyltransferase B	IPR015947 (PUA-like domain), IPR023267 (RNA (C5-cytosine) methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0008168 (methyltransferase activity)
Niben101Scf07579g04019.1	sp|Q8NFU5|IPMK_HUMAN	*-**	Inositol polyphosphate multikinase	IPR005522 (Inositol polyphosphate kinase)	GO:0008440 (inositol-1,4,5-trisphosphate 3-kinase activity)
Niben101Scf01509g02017.1	sp|Q9LUG9|MD33A_ARATH	*-*-	Mediator of RNA polymerase II transcription subunit 33A		
Niben101Scf02404g02020.1	sp|P64185|GLPD2_MYCBO	****	Glycerol-3-phosphate dehydrogenase 2	IPR000447 (FAD-dependent glycerol-3-phosphate dehydrogenase), IPR006076 (FAD dependent oxidoreductase), IPR008493 (Protein of unknown function DUF775)	GO:0004368 (glycerol-3-phosphate dehydrogenase activity), GO:0006072 (glycerol-3-phosphate metabolic process), GO:0009331 (glycerol-3-phosphate dehydrogenase complex), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07215g00008.1			Unknown protein		
Niben101Scf01745g07025.1	AT4G26540.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1091	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf15166g02005.1	sp|B4F6X2|LYRM9_XENTR	-**-	LYR motif-containing protein 9	IPR008011 (Complex 1 LYR protein)	
Niben101Scf07984g01002.1			Unknown protein		
Niben101Ctg08154g00002.1	sp|Q5XIK7|KATL1_RAT	*-*-	Katanin p60 ATPase-containing subunit A-like 1	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01535g01001.1	sp|Q94B74|NUDT2_ARATH	****	Nudix hydrolase 2	IPR003293 (Nudix hydrolase 6-like)	GO:0016787 (hydrolase activity)
Niben101Scf00023g08009.1			Unknown protein		
Niben101Scf02862g00009.1	ref|NP_001054623.2|	*-*-	[Oryza sativa Japonica Group] dbj|BAF16537.2| [Oryza sativa Japonica Group]		
Niben101Scf04133g01009.1	sp|Q9SI78|PPR93_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05440g02002.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07215g00009.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf00595g04019.1	ref|XP_002513686.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF49089.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09005g01008.1	gb|KEH37120.1|	****	short-chain dehydrogenase/reductase family protein [Medicago truncatula]	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02665g04013.1	AT3G46980.3	***-	phosphate transporter 4;3 LENGTH=534	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf04083g01004.1	gb|KEH39727.1|	***-	ABIL1-like protein [Medicago truncatula]	IPR028457 (ABI family)	
Niben101Scf07883g00004.1	sp|Q9LNB9|LBD2_ARATH	*-*-	LOB domain-containing protein 2	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf01711g01004.1	sp|Q4R5D9|YTHD2_MACFA	*-*-	YTH domain-containing family protein 2	IPR007275 (YTH domain)	
Niben101Scf00854g11082.1			Unknown protein		
Niben101Scf04104g09003.1	sp|Q8LFM2|GASAA_ARATH	***-	Gibberellin-regulated protein 10	IPR003854 (Gibberellin regulated protein)	
Niben101Scf02461g09001.1	AT1G62020.1	*-*-	Coatomer, alpha subunit LENGTH=1216	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf00578g06007.1	sp|Q9XEA8|CYSK2_ORYSJ	****	Cysteine synthase	IPR005856 (Cysteine synthase K/M)	GO:0004124 (cysteine synthase activity), GO:0006535 (cysteine biosynthetic process from serine)
Niben101Scf03952g00003.1	AT3G61680.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=649	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf00167g03014.1	ref|NP_001067921.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf03766g16006.1	sp|A8AAC1|FEN_IGNH4	*-**	Flap endonuclease 1	IPR001044 (XPG/Rad2 endonuclease, eukaryotes), IPR006085 (XPG N-terminal), IPR029060 (PIN domain-like)	GO:0003677 (DNA binding), GO:0003697 (single-stranded DNA binding), GO:0003824 (catalytic activity), GO:0004518 (nuclease activity), GO:0004519 (endonuclease activity), GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0006289 (nucleotide-excision repair), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf03145g02002.1	AT2G21720.1	***-	Plant protein of unknown function (DUF639) LENGTH=734	IPR006927 (Protein of unknown function DUF639)	
Niben101Scf02881g04001.1	emb|CDX70673.1|	***-	BnaC03g07570D [Brassica napus]		
Niben101Scf04021g08009.1	sp|Q89AE8|RL21_BUCBP	--*-	50S ribosomal protein L21		
Niben101Scf03600g01002.1	ref|XP_007028895.1|	***-	Nucleolar protein gar2-related isoform 2 [Theobroma cacao] gb|EOY09397.1| Nucleolar protein gar2-related isoform 2 [Theobroma cacao]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf02298g06007.1	sp|Q7SXU0|EI3JA_DANRE	*-**	Eukaryotic translation initiation factor 3 subunit J-A	IPR013906 (Eukaryotic translation initiation factor 3 subunit J), IPR023194 (Eukaryotic translation initiation factor 3-like domain)	GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf06509g05010.1	ref|XP_003594547.1|	*-*-	SNW domain-containing protein [Medicago truncatula] gb|AES64798.1| GAMYB-binding protein [Medicago truncatula]		
Niben101Scf00402g04008.1	sp|Q9LFH0|AB37G_ARATH	*-*-	ABC transporter G family member 37	IPR013525 (ABC-2 type transporter)	GO:0016020 (membrane)
Niben101Scf24657g00006.1	AT2G37710.1	*-**	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf17140g00007.1	AT2G46260.1	***-	BTB/POZ/Kelch-associated protein LENGTH=561	IPR008974 (TRAF-like), IPR011333 (BTB/POZ fold), IPR011705 (BTB/Kelch-associated)	GO:0005515 (protein binding)
Niben101Scf01225g04028.1	sp|Q9SVA5|PP357_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03365g05027.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05860g01020.1	sp|Q2R352|GL111_ORYSJ	***-	Germin-like protein 11-1	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf08195g06020.1	sp|Q8LG95|PP332_ARATH	***-	Pentatricopeptide repeat-containing protein		
Niben101Scf03049g06001.1	sp|P81391|MYB05_ANTMA	*-*-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01516g00002.1	ref|NP_001060505.1|	*-*-	product [Oryza sativa Japonica Group]	IPR005134 (Uncharacterised protein family UPF0114)	
Niben101Scf07497g01009.1	sp|Q9CAU3|SCP2_ARATH	****	Serine carboxypeptidase-like 2	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf08467g03001.1	AT5G05840.1	***-	Protein of unknown function (DUF620) LENGTH=439	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf03736g01002.1			Unknown protein		
Niben101Scf05776g01052.1	sp|A1EA50|RK2_AGRST	*-**	50S ribosomal protein L2, chloroplastic	IPR002171 (Ribosomal protein L2), IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit), GO:0015935 (small ribosomal subunit), GO:0016740 (transferase activity)
Niben101Scf00911g06011.1	emb|CDY47923.1|	*-*-	BnaAnng09550D [Brassica napus]		
Niben101Scf00712g16032.1	sp|Q681N2|PUB15_ARATH	--*-	U-box domain-containing protein 15		
Niben101Scf14115g01013.1	sp|B3QPW8|DNAJ_CHLP8	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf10910g01019.1	sp|Q2HBE7|DED1_CHAGB	****	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf04418g06001.1	sp|Q8RX01|Y3567_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold)	
Niben101Scf03197g03006.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	
Niben101Scf05634g00008.1	sp|P0DI74|S61G1_ARATH	****	Protein transport protein Sec61 subunit gamma-1	IPR001901 (Protein translocase complex, SecE/Sec61-gamma subunit), IPR023391 (Protein translocase SecE domain)	GO:0006605 (protein targeting), GO:0006886 (intracellular protein transport), GO:0015031 (protein transport), GO:0015450 (P-P-bond-hydrolysis-driven protein transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf03948g01009.1	ref|NP_194330.1|	****	RNA-binding KH domain-containing protein PEPPER [Arabidopsis thaliana] emb|CAB39665.1| putative nucleic acid binding protein [Arabidopsis thaliana] emb|CAB79455.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAL07137.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAM20510.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAM45112.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AEE85142.1| RNA-binding KH domain-containing protein PEPPER [Arabidopsis thaliana]	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf06817g00011.1	ref|XP_002536610.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF25773.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03965g01001.1	AT3G13990.1	***-	Kinase-related protein of unknown function (DUF1296) LENGTH=848	IPR009060 (UBA-like), IPR009719 (Protein of unknown function DUF1296, plant)	GO:0005515 (protein binding)
Niben101Scf01294g06001.1	AT4G03520.1	*-*-	Thioredoxin superfamily protein LENGTH=186	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf09360g02004.1	sp|Q94K41|SDR3B_ARATH	****	Short-chain dehydrogenase reductase 3b	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf10630g02012.1	sp|Q7Z3T8|ZFY16_HUMAN	*-*-	Zinc finger FYVE domain-containing protein 16	IPR007461 (Ysc84 actin-binding domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0046872 (metal ion binding)
Niben101Scf00390g05023.1	sp|Q9LFT0|TBL19_ARATH	***-	Protein trichome birefringence-like 19	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf01181g01007.1	sp|Q9LV33|BGL44_ARATH	***-	Beta-glucosidase 44	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03652g01011.1	AT4G14500.1	****	Polyketide cyclase/dehydrase and lipid transport superfamily protein LENGTH=433	IPR002913 (START domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf06093g00001.1	AT5G19450.1	****	calcium-dependent protein kinase 19 LENGTH=533	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01281g05001.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00819g05002.1	sp|P20144|WUN1_SOLTU	***-	Wound-induced protein 1	IPR016533 (Wound-induced protein, Wun1, subgroup)	
Niben101Scf03766g08007.1	AT5G14430.1	*-*-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=612	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf03790g00011.1	AT5G57940.1	****	cyclic nucleotide gated channel 5 LENGTH=717	IPR000048 (IQ motif, EF-hand binding site), IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0005515 (protein binding), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00173g09004.1	sp|A4GG89|RBL_PHAVU	****	Ribulose bisphosphate carboxylase large chain	IPR020888 (Ribulose bisphosphate carboxylase, large subunit)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf05079g00020.1	sp|Q2I3G5|NU4M_ELEMA	*-*-	NADH-ubiquinone oxidoreductase chain 4	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf13411g03002.1			Unknown protein		
Niben101Scf03374g04005.1	sp|A2AIL4|NDUF6_MOUSE	***-	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	IPR002060 (Squalene/phytoene synthase)	GO:0009058 (biosynthetic process), GO:0016740 (transferase activity)
Niben101Scf09960g00008.1	ref|XP_002511307.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF51909.1| conserved hypothetical protein [Ricinus communis]		
Niben101Ctg07461g00001.1	AT5G04460.1	*-*-	RING/U-box superfamily protein LENGTH=863		
Niben101Scf12069g00009.1	AT2G03360.2	*-*-	Glycosyltransferase family 61 protein LENGTH=455		
Niben101Scf10374g00003.1	sp|Q9D8P7|TF3C6_MOUSE	--*-	General transcription factor 3C polypeptide 6	IPR019481 (Transcription factor TFIIIC, tau55-related)	
Niben101Scf03214g00003.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00192g01022.1	gb|KGJ17481.1|	****	GTP-binding protein TypA [Paracoccus sp. 39524]	IPR000640 (Translation elongation factor EFG, V domain), IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR009022 (Elongation factor G, III-V domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Ctg11309g00002.1	ref|XP_007008942.1|	*-*-	Transducin family protein / WD-40 repeat family protein, putative isoform 2 [Theobroma cacao] gb|EOY17752.1| Transducin family protein / WD-40 repeat family protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf08587g00002.1	sp|P93788|REMO_SOLTU	***-	Remorin	IPR005516 (Remorin, C-terminal), IPR005518 (Remorin, N-terminal)	
Niben101Scf13268g00004.1	AT3G09520.1	****	exocyst subunit exo70 family protein H4 LENGTH=628	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf00150g04013.1	sp|Q0UWA6|DED1_PHANO	*-**	ATP-dependent RNA helicase DED1	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf06153g02011.1	AT4G17960.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=154		
Niben101Scf05311g01008.1	sp|Q96288|BBX24_ARATH	****	B-box zinc finger protein 24	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf03761g00015.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01220g01012.1	gb|AES92348.2|	*-*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf05365g00002.1			Unknown protein		
Niben101Scf00173g00010.1	sp|A4IF94|HIAL1_BOVIN	*-*-	Hippocampus abundant transcript-like protein 1	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01383g09024.1	ref|XP_007015331.1|	***-	Dgd1 suppressor 1 isoform 2 [Theobroma cacao] gb|EOY32950.1| Dgd1 suppressor 1 isoform 2 [Theobroma cacao]		
Niben101Scf06394g04023.1	sp|A2ZVY5|C3H9_ORYSJ	***-	Zinc finger CCCH domain-containing protein 9	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf01076g01010.1	emb|CDY11374.1|	*-*-	BnaA09g39400D [Brassica napus]	IPR021480 (Protein of unknown function DUF3133)	
Niben101Scf00854g05039.1	sp|Q2LCQ6|COX1_DICCI	*-**	Cytochrome c oxidase subunit 1+2	IPR000114 (Ribosomal protein L16), IPR001351 (Ribosomal protein S3, C-terminal), IPR008972 (Cupredoxin), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0016020 (membrane), GO:0019843 (rRNA binding)
Niben101Scf05755g01002.1	AT2G13290.1	****	beta-1,4-N-acetylglucosaminyltransferase family protein LENGTH=361	IPR006813 (Glycosyl transferase, family 17)	GO:0003830 (beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity), GO:0006487 (protein N-linked glycosylation), GO:0016020 (membrane)
Niben101Scf10498g01006.1	sp|Q9AKH1|FER2_RICRI	***-	2Fe-2S ferredoxin	IPR001055 (Adrenodoxin), IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf08926g00001.1	AT5G01010.2	***-	EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages;	IPR009038 (GOLD)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf26315g00002.1	sp|Q8GW31|DCP2_ARATH	***-	mRNA-decapping enzyme subunit 2	IPR007722 (mRNA decapping protein 2, Box A), IPR015797 (NUDIX hydrolase domain-like)	GO:0003723 (RNA binding), GO:0016787 (hydrolase activity), GO:0030145 (manganese ion binding)
Niben101Scf18348g01030.1	ref|XP_005710919.1|	--*-	ATP dependant DNA helicase [Chondrus crispus] emb|CDF40625.1| ATP dependant DNA helicase [Chondrus crispus]		
Niben101Scf02543g02019.1	gb|AAG28525.1|AF198498_1	***-	anther-specific myb-related protein 2 [Nicotiana tabacum]		
Niben101Scf06823g00018.1	emb|CDY52413.1|	***-	BnaCnng22340D [Brassica napus]	IPR024738 (Transcriptional coactivator Hfi1/Transcriptional adapter 1)	GO:0070461 (SAGA-type complex)
Niben101Scf06016g08007.1	AT1G22160.1	***-	Protein of unknown function (DUF581) LENGTH=147	IPR007650 (Zf-FLZ domain)	
Niben101Scf01481g01005.1	sp|Q9C9Y4|FB136_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00751g01008.1	sp|Q9M7R0|ALL8_OLEEU	****	Calcium-binding allergen Ole e 8	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00279g03002.1	sp|Q93W54|ICMTB_ARATH	--*-	Protein-S-isoprenylcysteine O-methyltransferase B	IPR007318 (Phospholipid methyltransferase)	
Niben101Scf03685g00003.1	sp|Q9CAL3|CRK2_ARATH	*-**	Cysteine-rich receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05629g01024.1	sp|A4J5C3|METE_DESRM	*-**	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	IPR002629 (Cobalamin-independent methionine synthase MetE, C-terminal/archaeal), IPR013215 (Cobalamin-independent methionine synthase MetE, N-terminal)	GO:0003871 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity), GO:0008270 (zinc ion binding), GO:0008652 (cellular amino acid biosynthetic process), GO:0009086 (methionine biosynthetic process)
Niben101Scf01209g07005.1			Unknown protein		
Niben101Scf07895g07004.1			Unknown protein		
Niben101Scf12314g00005.1	sp|Q9FLJ2|NC100_ARATH	***-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01697g00004.1	sp|Q2S9Z8|LPXC_HAHCH	****	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	IPR004463 (UDP-3-O-acyl N-acetylglucosamine deacetylase)	GO:0008759 (UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity), GO:0009245 (lipid A biosynthetic process)
Niben101Scf00524g02006.1	AT1G70550.1	***-	Protein of Unknown Function (DUF239) LENGTH=465	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf05302g05006.1	sp|Q02084|A33_PLEWA	--**	Zinc-binding protein A33	IPR003105 (SRA-YDG), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015947 (PUA-like domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0042393 (histone binding), GO:0046872 (metal ion binding)
Niben101Scf03504g05001.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02749g04008.1	sp|P94072|GL33_ARATH	***-	Germin-like protein subfamily 3 member 3	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf11126g09010.1	sp|Q9C5H6|CSTR3_ARATH	*-*-	CMP-sialic acid transporter 3	IPR007271 (Nucleotide-sugar transporter)	GO:0000139 (Golgi membrane), GO:0005351 (sugar:proton symporter activity), GO:0008643 (carbohydrate transport), GO:0016021 (integral component of membrane)
Niben101Scf06806g00004.1	AT2G43970.1	*-**	RNA-binding protein LENGTH=545	IPR002344 (Lupus La protein), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0006396 (RNA processing), GO:0030529 (ribonucleoprotein complex)
Niben101Scf05107g03006.1	sp|Q9LXT9|CALS3_ARATH	*-**	Callose synthase 3	IPR023175 (Vacuolar protein sorting-associate protein Vta1/Callose synthase, N-terminal domain), IPR026899 (1,3-beta-glucan synthase subunit FKS1-like, domain-1), IPR026953 (Callose synthase)	GO:0003843 (1,3-beta-D-glucan synthase activity)
Niben101Ctg10460g00001.1	AT2G37420.1	*-**	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf02860g02003.1	AT4G27130.1	****	Translation initiation factor SUI1 family protein LENGTH=113	IPR001950 (Translation initiation factor SUI1)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf04110g01001.1	dbj|BAB88877.1|	--*-	late embryogenesis-abundant protein [Brassica napus]	IPR004238 (Late embryogenesis abundant protein, LEA-3)	
Niben101Scf20135g00004.1	sp|Q3KQF4|LRC69_XENLA	*-*-	Leucine-rich repeat-containing protein 69	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf02572g01013.1	sp|Q9STF9|PP266_ARATH	***-	Pentatricopeptide repeat-containing protein		
Niben101Scf10316g02004.1	sp|B4F298|F16PA_PROMH	****	Fructose-1,6-bisphosphatase class 1	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf02085g27022.1	AT1G29690.1	*-*-	MAC/Perforin domain-containing protein LENGTH=561		
Niben101Scf00634g00005.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf05374g00004.1	AT5G47710.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=166	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf03150g01001.1	sp|Q9C6M1|GDT14_ARATH	***-	GDT1-like protein 4	IPR001727 (Uncharacterised protein family UPF0016)	GO:0016020 (membrane)
Niben101Scf00854g09077.1			Unknown protein		
Niben101Scf06734g01017.1	gb|AGN52025.1|	--*-	MYB-related transcription factor [Salvia miltiorrhiza]		
Niben101Scf09618g00007.1	sp|O23081|CRK41_ARATH	*-**	Cysteine-rich receptor-like protein kinase 41	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01941g01003.1			Unknown protein		
Niben101Scf02310g04007.1	sp|Q9ZT42|RHF2A_ARATH	***-	E3 ubiquitin-protein ligase RHF2A		
Niben101Scf08670g00029.1	sp|Q9FJ40|GDL86_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf05438g00001.1	ref|WP_008921771.1|	***-	peptidase C45 [Burkholderia sp. H160] gb|EDZ99930.1| peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase [Burkholderia sp. H160]	IPR005079 (Peptidase C45)	
Niben101Scf02794g06016.1			Unknown protein		
Niben101Scf06849g00029.1	sp|Q7W515|HEMH_BORPA	--*-	Ferrochelatase		
Niben101Scf05099g01001.1	sp|Q9M7X7|RL291_ARATH	***-	60S ribosomal protein L29-1	IPR002673 (Ribosomal protein L29e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10036g01004.1	sp|Q3C1P9|NU1C_NICSY	*-*-	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf00286g05002.1	AT3G23090.1	*-*-	TPX2 (targeting protein for Xklp2) protein family LENGTH=338		
Niben101Scf00438g00011.1	sp|Q5FGW5|NUOH_EHRRG	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf05143g00009.1	sp|Q8L7L1|SPHK1_ARATH	****	Sphingosine kinase 1	IPR001206 (Diacylglycerol kinase, catalytic domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf00725g02012.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02929g01091.1			Unknown protein		
Niben101Scf12714g00012.1	sp|Q8GY42|NAC25_ARATH	*-**	NAC transcription factor 25	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00289g03011.1			Unknown protein		
Niben101Scf07383g11005.1	sp|Q9X7R6|RNH_STRCO	--*-	Ribonuclease HI	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf01374g03036.1	sp|Q8LEM8|RL373_ARATH	***-	60S ribosomal protein L37-3	IPR001569 (Ribosomal protein L37e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Ctg07566g00002.1	AT3G24740.1	*-*-	Protein of unknown function (DUF1644) LENGTH=354	IPR012866 (Protein of unknown function DUF1644)	
Niben101Scf05017g02004.1	sp|P92961|PROT1_ARATH	***-	Proline transporter 1	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf09492g00001.1	sp|Q6XLL8|KAX67_OPICA	-**-	Potassium channel toxin alpha-KTx 6.7		
Niben101Scf14769g01005.1	AT1G54650.2	*-*-	Methyltransferase family protein LENGTH=301	IPR026113 (Methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf02639g03012.1	sp|Q97EI6|RL29_CLOAB	-**-	50S ribosomal protein L29	IPR001854 (Ribosomal protein L29)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07813g01009.1	sp|Q6ZMB5|T184A_HUMAN	***-	Transmembrane protein 184A	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184)	
Niben101Scf00745g02015.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg13328g00002.1	ref|XP_007033347.1|	*-*-	Decapping 5, putative isoform 1 [Theobroma cacao] gb|EOY04273.1| Decapping 5, putative isoform 1 [Theobroma cacao]	IPR019050 (FDF domain), IPR025762 (DFDF domain)	
Niben101Scf01422g00010.1	sp|Q9SFT7|Y3707_ARATH	*-*-	Serine/threonine-protein kinase		
Niben101Scf01409g00019.1	sp|F4K5K4|TBL5_ARATH	***-	Protein trichome birefringence-like 5	IPR026057 (PC-Esterase)	
Niben101Scf02636g08007.1	sp|Q84W80|FBL42_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02237g07021.1	gb|ADB03785.1|	***-	deleted in split hand/splt foot protein 1 [Ipomoea batatas]	IPR007834 (DSS1/SEM1)	
Niben101Scf00596g02023.1			Unknown protein		
Niben101Scf08819g01014.1	sp|Q9FFR9|CHX18_ARATH	****	Cation/H(+) antiporter 18	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03693g01006.1	gb|AAB01558.1|	--*-	late embryogenesis abundant protein [Picea glauca]		
Niben101Scf03467g00009.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR000225 (Armadillo), IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04523g00004.1	sp|P46279|RPB7_SOYBN	*-**	DNA-directed RNA polymerase II subunit RPB7	IPR005576 (RNA polymerase Rpb7, N-terminal), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf04782g00004.1	sp|Q41001|BCP_PEA	*-*-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf03341g05014.1	sp|P23137|GRP1_TOBAC	--*-	Glycine-rich protein		
Niben101Scf04655g04020.1	sp|P24826|CHS1_SOYBN	*-*-	Chalcone synthase 1	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03481g01020.1	sp|Q14691|PSF1_HUMAN	***-	DNA replication complex GINS protein PSF1	IPR005339 (GINS complex, subunit Psf1)	
Niben101Scf08804g03024.1			Unknown protein		
Niben101Scf00491g00001.1	sp|Q9FLJ2|NC100_ARATH	*-*-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05809g00003.1	sp|Q6XZ78|SCRK2_MAIZE	*-*-	Fructokinase-2	IPR029056 (Ribokinase-like)	
Niben101Scf02043g06007.1	sp|B3H4F1|SP1L1_ARATH	***-	Protein SPIRAL1-like 1		
Niben101Scf18484g01002.1	sp|Q10FZ7|YAB2_ORYSJ	***-	Protein YABBY 2	IPR006780 (YABBY protein)	
Niben101Scf02827g05018.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00775g05002.1	sp|Q9C8K2|AB12G_ARATH	*-*-	ABC transporter G family member 12	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf13478g00003.1	sp|Q9C810|Y1342_ARATH	*-*-	PHD finger protein		
Niben101Scf06383g01006.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf10980g00002.1	AT5G63640.1	*-*-	ENTH/VHS/GAT family protein LENGTH=447		
Niben101Scf08947g01014.1	sp|Q9C5H6|CSTR3_ARATH	***-	CMP-sialic acid transporter 3	IPR007271 (Nucleotide-sugar transporter)	GO:0000139 (Golgi membrane), GO:0005351 (sugar:proton symporter activity), GO:0008643 (carbohydrate transport), GO:0016021 (integral component of membrane)
Niben101Scf04007g02013.1	sp|P0CB38|PAB4L_HUMAN	****	Polyadenylate-binding protein 4-like	IPR006515 (Polyadenylate binding protein, human types 1, 2, 3, 4), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf00606g03008.1	sp|Q6DHN0|TMM53_DANRE	***-	Transmembrane protein 53	IPR008547 (Protein of unknown function DUF829, TMEM53), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07321g00036.1	sp|P92996|GL120_ARATH	***-	Germin-like protein subfamily 1 member 20	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf05698g01015.1	sp|Q93ZB9|FACR3_ARATH	****	Fatty acyl-CoA reductase 3	IPR016040 (NAD(P)-binding domain), IPR026055 (Fatty acyl-CoA reductase)	GO:0080019 (fatty-acyl-CoA reductase (alcohol-forming) activity)
Niben101Scf00422g00003.1	AT5G56730.1	****	Insulinase (Peptidase family M16) protein LENGTH=956	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0046872 (metal ion binding)
Niben101Scf03224g00008.1			Unknown protein		
Niben101Scf13229g00002.1	sp|Q8L7S4|MP702_ARATH	****	Microtubule-associated protein 70-2	IPR009768 (Microtubule-associated protein 70)	GO:0007010 (cytoskeleton organization), GO:0008017 (microtubule binding)
Niben101Scf05929g06002.1	AT3G24315.1	***-	Sec20 family protein LENGTH=293	IPR005606 (Sec20)	
Niben101Scf23113g01013.1	ref|WP_025629439.1|	***-	Appr-1-p processing protein [Vibrio parahaemolyticus]	IPR002589 (Macro domain)	
Niben101Scf04951g03002.1	gb|AAF09256.1|AF202179_1	--*-	disease resistance protein BS2 [Capsicum chacoense]		
Niben101Scf00712g14002.1			Unknown protein		
Niben101Scf10488g01001.1	AT3G54040.1	***-	PAR1 protein LENGTH=183	IPR009489 (PAR1)	
Niben101Scf01041g01007.1			Unknown protein		
Niben101Scf00415g07006.1	sp|Q9BKJ9|LMPB_DICDI	--*-	Lysosome membrane protein 2-B		
Niben101Scf05926g02003.1	sp|P93422|SYH_ORYSJ	--*-	Histidine--tRNA ligase		
Niben101Scf06026g01005.1	AT3G29185.2	***-	Domain of unknown function (DUF3598) LENGTH=411	IPR011038 (Calycin-like), IPR022017 (Domain of unknown function DUF3598)	
Niben101Scf12969g01015.1	AT5G04910.1	***-	unknown protein; Has 71 Blast hits to 71 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). LENGTH=222		
Niben101Scf03925g02017.1	sp|P47735|RLK5_ARATH	*-*-	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf02243g07012.1	sp|Q7TQK4|EXOS3_MOUSE	****	Exosome complex component RRP40	IPR004088 (K Homology domain, type 1), IPR012340 (Nucleic acid-binding, OB-fold), IPR026699 (Exosome complex RNA-binding protein 1/RRP40/RRP4)	GO:0000178 (exosome (RNase complex)), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf10050g01001.1	AT5G51180.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=357	IPR007751 (Domain of unknown function DUF676, lipase-like), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf08782g03009.1	sp|P43186|BEV1M_BETPN	***-	Major pollen allergen Bet v 1-M/N	IPR000916 (Bet v I domain), IPR023393 (START-like domain), IPR024949 (Bet v I type allergen)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf20037g00017.1	sp|Q8GXB7|TRMB_ARATH	****	tRNA (guanine-N(7)-)-methyltransferase	IPR003358 (tRNA (guanine-N-7) methyltransferase, Trmb type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006400 (tRNA modification), GO:0008176 (tRNA (guanine-N7-)-methyltransferase activity)
Niben101Scf00152g25020.1	sp|A7GT07|DNAJ_BACCN	--*-	Chaperone protein DnaJ	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf02589g04005.1	gb|AAX96559.1|	*-*-	expressed protein [Oryza sativa Japonica Group]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf08039g01007.1	sp|A5D5J3|RL2_PELTS	--*-	50S ribosomal protein L2	IPR008991 (Translation protein SH3-like domain), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04167g02003.1	sp|Q9LSL1|BH093_ARATH	--*-	Transcription factor bHLH93	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04847g00002.1	sp|Q6NPD7|NUD10_ARATH	*-*-	Nudix hydrolase 10		
Niben101Scf03939g03001.1			Unknown protein		
Niben101Scf10162g02021.1	sp|P04635|LIP_STAHY	***-	Lipase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03676g02013.1	AT4G31010.1	*-**	RNA-binding CRS1 / YhbY (CRM) domain-containing protein LENGTH=405	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf00854g04084.1			Unknown protein		
Niben101Scf03716g04008.1	sp|P81392|MYB06_ANTMA	***-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01274g06001.1	AT3G57070.1	***-	Glutaredoxin family protein LENGTH=417	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf08576g01002.1	sp|Q93ZQ5|SPXM3_ARATH	****	SPX domain-containing membrane protein	IPR004331 (SPX, N-terminal), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf04015g02011.1	sp|Q9ASR4|BCAL2_ARATH	***-	Branched-chain-amino-acid aminotransferase-like protein 2	IPR001544 (Aminotransferase, class IV), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf02211g02011.1	sp|Q8LF21|DRP1C_ARATH	***-	Dynamin-related protein 1C	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf00428g08008.1	AT1G18370.1	****	ATP binding microtubule motor family protein LENGTH=974	IPR001752 (Kinesin motor domain), IPR021881 (Protein of unknown function DUF3490), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00168g03012.1	ref|XP_003618031.1|	****	Retinoblastoma-binding protein [Medicago truncatula] gb|AET00990.1| DWNN domain, A CCHC-type zinc finger protein [Medicago truncatula]	IPR001878 (Zinc finger, CCHC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014891 (DWNN domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf02634g03002.1	sp|P57673|RNH2_THEAC	--**	Ribonuclease HII	IPR001352 (Ribonuclease HII/HIII), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Ctg10798g00001.1	ref|XP_002510318.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52505.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04368g00021.1			Unknown protein		
Niben101Scf05246g02017.1	ref|NP_182114.1|	--*-	ph [Arabidopsis thaliana]	IPR022212 (Protein of unknown function DUF3741), IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf05519g02014.1	gb|AAM18178.1|	***-	anther protein [Nicotiana tabacum]		
Niben101Scf12266g09004.1	sp|Q9LVZ7|PDCT1_ARATH	***-	Phosphatidylcholine:diacylglycerol cholinephosphotransferase 1		
Niben101Scf04899g01004.1	sp|Q9SCW4|HFB2A_ARATH	****	Heat stress transcription factor B-2a	IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf12754g00010.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01020g06002.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf03380g01009.1	sp|Q94KE2|TIC_ARATH	*-*-	Protein TIME FOR COFFEE		
Niben101Scf01676g00026.1	sp|Q9FJZ9|PER72_ARATH	****	Peroxidase 72	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00063g02005.1			Unknown protein		
Niben101Scf32392g00004.1	AT2G01590.1	*-*-	chlororespiratory reduction 3 LENGTH=174		
Niben101Scf12885g01001.1	sp|Q93VY3|NAC72_ARATH	*-*-	NAC domain-containing protein 72		
Niben101Scf04117g07003.1	sp|Q66HG1|DMTF1_RAT	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01798g12001.1	sp|D1C8C0|FTSH4_SPHTD	*-**	ATP-dependent zinc metalloprotease FtsH 4	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027243 (Mitochondrial chaperone BCS1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0034551 (mitochondrial respiratory chain complex III assembly)
Niben101Scf11813g01026.1	AT5G58320.2	***-	Kinase interacting (KIP1-like) family protein LENGTH=558	IPR011684 (KIP1-like)	
Niben101Scf05809g00002.1	AT4G20860.1	***-	FAD-binding Berberine family protein LENGTH=530		
Niben101Scf18330g00001.1	gb|AES63134.2|	***-	lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf00442g10010.1			Unknown protein		
Niben101Scf02468g07002.1	AT3G54880.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=112	IPR025124 (Domain of unknown function DUF4050)	
Niben101Scf00245g05007.1	sp|Q6NMQ7|GASA6_ARATH	***-	Gibberellin-regulated protein 6	IPR003854 (Gibberellin regulated protein)	
Niben101Scf01623g05007.1	ref|XP_002491321.1|	****	Mitochondrial NAD+ transporter, involved in the transport of NAD+ into the mitochondria [Komagataella pastoris GS115] emb|CAY69041.1| Mitochondrial NAD+ transporter, involved in the transport of NAD+ into the mitochondria [Komagataella pastoris GS115] emb|CCA38561.1| Calcium-binding mitochondrial carrier protein SCaMC-1 [Komagataella pastoris CBS 7435]	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf03046g04014.1	AT2G37730.1	***-	Protein of unknown function (DUF604) LENGTH=532	IPR006740 (Protein of unknown function DUF604)	
Niben101Ctg09585g00002.1	AT2G37710.1	*-**	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07650g02017.1	AT5G59290.2	***-	UDP-glucuronic acid decarboxylase 3 LENGTH=357	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf05043g01011.1	sp|Q02040|AK17A_HUMAN	--*-	A-kinase anchor protein 17A		
Niben101Scf09202g01001.1	sp|Q9Y3B2|EXOS1_HUMAN	****	Exosome complex component CSL4	IPR012340 (Nucleic acid-binding, OB-fold), IPR019495 (Exosome complex component CSL4), IPR025721 (Exosome complex component, N-terminal domain)	GO:0000178 (exosome (RNase complex)), GO:0003723 (RNA binding)
Niben101Scf00578g03001.1	ref|XP_007031334.1|	***-	P-loop containing nucle isoform 1 [Theobroma cacao]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02153g02009.1	sp|Q9K9K5|SPEA_BACHD	--*-	Arginine decarboxylase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02631g00007.1	sp|Q9LJK1|FUT11_ARATH	****	Glycoprotein 3-alpha-L-fucosyltransferase A	IPR001503 (Glycosyl transferase, family 10)	GO:0006486 (protein glycosylation), GO:0008417 (fucosyltransferase activity), GO:0016020 (membrane)
Niben101Scf02538g00007.1	AT5G38200.1	****	Class I glutamine amidotransferase-like superfamily protein LENGTH=436	IPR011697 (Peptidase C26), IPR029062 (Class I glutamine amidotransferase-like)	GO:0006541 (glutamine metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01170g01015.1	sp|Q8VXX9|BETL1_ARATH	***-	Bet1-like protein	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf03805g00002.1			Unknown protein		
Niben101Scf01196g00008.1			Unknown protein		
Niben101Scf03953g03024.1	ref|XP_002313839.2|	***-	Calmodulin-binding family protein [Populus trichocarpa] gb|EEE87794.2| Calmodulin-binding family protein [Populus trichocarpa]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf07242g05006.1	sp|Q40704|MADS3_ORYSJ	*-*-	MADS-box transcription factor 3	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf39430g00005.1	sp|O08467|GLNA_THEKO	*-*-	Glutamine synthetase	IPR006992 (Amidohydrolase 2), IPR014746 (Glutamine synthetase/guanido kinase, catalytic domain)	GO:0003824 (catalytic activity), GO:0004356 (glutamate-ammonia ligase activity), GO:0006807 (nitrogen compound metabolic process), GO:0008152 (metabolic process)
Niben101Scf05698g01017.1	sp|Q680B9|PRRP2_ARATH	*-*-	Proteinaceous RNase P 2	IPR002885 (Pentatricopeptide repeat), IPR021869 (Ribonuclease Zc3h12a-like)	
Niben101Scf06101g02005.1	sp|Q9CR80|FA32A_MOUSE	--*-	Protein FAM32A	IPR013865 (Protein of unknown function DUF1754, eukaryotic)	
Niben101Scf01917g07013.1	sp|Q5RAY0|PFD5_PONAB	****	Prefoldin subunit 5	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex), GO:0051082 (unfolded protein binding)
Niben101Scf06112g02014.1	sp|Q6P1B1|XPP1_MOUSE	***-	Xaa-Pro aminopeptidase 1	IPR000994 (Peptidase M24, structural domain), IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	GO:0016787 (hydrolase activity)
Niben101Scf13601g00039.1	sp|Q5R874|DHX9_PONAB	*-**	ATP-dependent RNA helicase A	IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014720 (Double-stranded RNA-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding)
Niben101Scf13478g00001.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07400g01005.1	sp|Q9Y6D9|MD1L1_HUMAN	*-**	Mitotic spindle assembly checkpoint protein MAD1	IPR008672 (Spindle assembly checkpoint component Mad1)	GO:0007094 (mitotic spindle assembly checkpoint)
Niben101Scf05374g01020.1	sp|Q84W66|NFYB6_ARATH	****	Nuclear transcription factor Y subunit B-6	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf03937g04011.1	sp|Q9XGY7|FAR_SIMCH	*-**	Alcohol-forming fatty acyl-CoA reductase	IPR026055 (Fatty acyl-CoA reductase)	GO:0080019 (fatty-acyl-CoA reductase (alcohol-forming) activity)
Niben101Scf12706g00001.1	dbj|GAF30400.1|	*-**	short-chain dehydrogenase/reductase [Nocardia seriolae N-2927]	IPR002198 (Short-chain dehydrogenase/reductase SDR)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01124g25002.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR015757 (Calcineurin B protein)	GO:0005509 (calcium ion binding)
Niben101Scf12560g00013.1	sp|Q9W4D2|RNP4F_DROME	--**	RNA-binding protein 4F	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR024888 (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'')	GO:0000166 (nucleotide binding), GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0017069 (snRNA binding)
Niben101Scf02307g01004.1	sp|Q9LM76|PUB44_ARATH	***-	U-box domain-containing protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf05177g03021.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf06898g02009.1	sp|A9WK62|OBG_CHLAA	*-*-	GTPase Obg	IPR004396 (Ribosome-binding ATPase YchF/Obg-like ATPase 1), IPR023192 (TGS-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf06158g01016.1			Unknown protein		
Niben101Scf34140g00003.1	sp|D2NQQ7|FTSH_ROTMD	--**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf13995g01012.1	sp|P46512|CAH1_FLALI	*-*-	Carbonic anhydrase 1	IPR001765 (Carbonic anhydrase)	GO:0004089 (carbonate dehydratase activity), GO:0008270 (zinc ion binding), GO:0015976 (carbon utilization)
Niben101Scf03435g02020.1	sp|Q9M8S8|VTC4_ARATH	-***	Inositol-phosphate phosphatase	IPR000760 (Inositol monophosphatase)	GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf01009g02003.1	sp|Q8WXF0|SRS12_HUMAN	*-*-	Serine/arginine-rich splicing factor 12	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf08128g00017.1	gb|KEH17984.1|	****	fatty acid hydroxylase superfamily protein [Medicago truncatula]	IPR006694 (Fatty acid hydroxylase), IPR021940 (Uncharacterised domain Wax2, C-terminal)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04950g03008.1			Unknown protein		
Niben101Scf02297g09011.1	sp|Q945T0|RALF_TOBAC	***-	Rapid alkalinization factor	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf02197g02002.1	sp|Q8T135|KIF5_DICDI	*-**	Kinesin-related protein 5	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf08455g00014.1	sp|Q94A79|DMS3_ARATH	***-	Protein DEFECTIVE IN MERISTEM SILENCING 3		
Niben101Scf32927g00004.1	sp|O23044|PER3_ARATH	****	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10885g00017.1	sp|Q65FT5|MENE_BACLD	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf06275g02006.1	gb|ABX46123.1|	***-	blight-associated protein P12, partial [Citrus medica]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf01072g03009.1	AT4G10720.1	***-	Ankyrin repeat family protein LENGTH=445	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf01509g02016.1	AT3G06550.2	*-*-	O-acetyltransferase family protein LENGTH=568		
Niben101Scf05459g00005.1	sp|Q93ZQ5|SPXM3_ARATH	****	SPX domain-containing membrane protein	IPR004331 (SPX, N-terminal), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf04391g01001.1	sp|Q42806|KPYC_SOYBN	--*-	Pyruvate kinase, cytosolic isozyme		
Niben101Scf03335g00004.1	sp|Q9T0D6|PP306_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01795g04026.1	sp|Q146Y5|GATA_BURXL	--*-	Glutamyl-tRNA(Gln) amidotransferase subunit A		
Niben101Scf10152g05002.1	sp|Q9SIY8|LAC5_ARATH	***-	Laccase-5	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06509g04013.1	sp|Q93Z92|RING4_ARATH	--*-	E3 ubiquitin-protein ligase	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01788g00003.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf01771g01023.1	AT4G13970.1	****	zinc ion binding LENGTH=778	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf09040g00012.1	sp|Q9AST6|VSP55_ARATH	***-	Vacuolar protein sorting-associated protein 55 homolog	IPR007262 (Vacuolar protein sorting 55)	
Niben101Scf11601g00003.1	sp|A1A4P5|PFD2_BOVIN	****	Prefoldin subunit 2	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex), GO:0051082 (unfolded protein binding)
Niben101Scf02348g05008.1	sp|Q21215|GBLP_CAEEL	--**	Guanine nucleotide-binding protein subunit beta-2-like 1	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf09938g00001.1	emb|CDX68992.1|	***-	BnaC01g04610D [Brassica napus]	IPR013714 (Golgi apparatus membrane protein TVP15)	
Niben101Scf02771g02003.1	sp|Q8N7C7|RN148_HUMAN	*-*-	RING finger protein 148	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00099g00003.1	sp|Q8N7C7|RN148_HUMAN	--*-	RING finger protein 148	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf12714g00014.1	emb|CDY30736.1|	***-	BnaA02g33580D [Brassica napus]		
Niben101Scf01670g02001.1	sp|Q9LZB2|GDL74_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf06203g04002.1	AT5G66600.4	***-	Protein of unknown function, DUF547 LENGTH=629	IPR006869 (Domain of unknown function DUF547), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	
Niben101Scf07236g00011.1	AT5G50740.3	****	Heavy metal transport/detoxification superfamily protein LENGTH=290	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf00565g00009.1	AT2G43190.1	*-*-	ribonuclease P family protein LENGTH=296		
Niben101Scf01787g00080.1			Unknown protein		
Niben101Ctg14443g00002.1	sp|Q9SCV3|BGAL9_ARATH	*-*-	Beta-galactosidase 9	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04132g04002.1	sp|Q93VV5|PTR16_ARATH	***-	Protein NRT1/ PTR FAMILY 4.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00369g14002.1			Unknown protein		
Niben101Scf04219g01015.1	sp|Q9LJX4|PUM5_ARATH	***-	Pumilio homolog 5	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf08566g05002.1	gb|ABA98637.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf02003g00002.1	AT2G01150.1	***-	RING-H2 finger protein 2B LENGTH=147	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf02790g05007.1	sp|Q54DB1|CM2A2_DICDI	***-	Charged multivesicular body protein 2a homolog 2	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf00017g00005.1	sp|A1RWY6|PSB1_THEPD	****	Proteasome subunit beta 1	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf00239g09008.1	sp|Q86JM3|RPC6_DICDI	--**	DNA-directed RNA polymerase III subunit rpc6	IPR007832 (RNA polymerase Rpc34)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf01490g00001.1	sp|Q9SW80|BLH2_ARATH	***-	BEL1-like homeodomain protein 2	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04283g08013.1	sp|P0CO79|GEM1_CRYNB	****	Mitochondrial Rho GTPase 1	IPR003578 (Small GTPase superfamily, Rho type), IPR011992 (EF-hand domain pair), IPR021181 (Small GTPase superfamily, mitochondrial Rho), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005509 (calcium ion binding), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0005741 (mitochondrial outer membrane), GO:0007264 (small GTPase mediated signal transduction), GO:0019725 (cellular homeostasis)
Niben101Scf09414g00007.1	sp|Q5I0G4|SYG_RAT	****	Glycine--tRNA ligase	IPR002314 (Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain), IPR027031 (Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation)
Niben101Scf12304g02002.1	sp|Q5ZC82|LOG_ORYSJ	***-	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf00047g02009.1	AT4G20170.1	***-	Domain of unknown function (DUF23) LENGTH=504	IPR008166 (Domain of unknown function DUF23)	
Niben101Scf01980g04003.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10707g01006.1	AT5G11090.1	***-	serine-rich protein-related LENGTH=217		
Niben101Scf01941g01005.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf03284g06010.1	sp|Q93Z16|RPN2_ARATH	***-	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	IPR008814 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1)	GO:0006487 (protein N-linked glycosylation), GO:0008250 (oligosaccharyltransferase complex), GO:0016021 (integral component of membrane)
Niben101Scf06754g07010.1			Unknown protein		
Niben101Scf03969g03004.1	sp|Q8GWK2|AP2L4_ARATH	--*-	AP2-like ethylene-responsive transcription factor		
Niben101Scf03445g00009.1	gb|KEH31824.1|	****	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf02357g08010.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021720 (Malectin)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00362g00006.1			Unknown protein	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg12838g00001.1	ref|XP_010097046.1|	--*-	Protein IQ-DOMAIN 1 [Morus notabilis] gb|EXB66847.1| Protein IQ-DOMAIN 1 [Morus notabilis]		
Niben101Scf02711g00003.1	AT1G27320.1	****	histidine kinase 3 LENGTH=1036	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR006189 (CHASE), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg14777g00001.1	sp|Q59800|G3P_STRAU	--*-	Glyceraldehyde-3-phosphate dehydrogenase	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf07444g00002.1	sp|O67820|IMDH_AQUAE	*-*-	Inosine-5'-monophosphate dehydrogenase	IPR000644 (CBS domain)	
Niben101Scf03877g00009.1	sp|P42423|YXDL_BACSU	--**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Ctg16171g00002.1	emb|CDX79491.1|	***-	BnaC03g18270D [Brassica napus]	IPR028346 (HAUS augmin-like complex subunit 2)	GO:0031023 (microtubule organizing center organization), GO:0051225 (spindle assembly)
Niben101Scf00644g00012.1	sp|B0F9L7|GOGC2_ARATH	*-*-	Golgin candidate 2		
Niben101Scf00425g03032.1			Unknown protein		
Niben101Scf04432g07003.1	AT1G66360.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=174	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf02682g00005.1			Unknown protein		
Niben101Scf09604g00015.1	sp|Q5SPR8|ESCO2_DANRE	*-*-	N-acetyltransferase ESCO2	IPR028005 (N-acetyltransferase ESCO, zinc-finger), IPR028009 (N-acetyltransferase ESCO, acetyl-transferase domain)	
Niben101Scf01415g01002.1	gb|KEH23689.1|	*-*-	LRR receptor-like Serine/Threonine-kinase RKF3, putative [Medicago truncatula]		
Niben101Scf13186g03001.1	AT5G14660.1	****	peptide deformylase 1B LENGTH=273	IPR000181 (Formylmethionine deformylase), IPR023635 (Peptide deformylase)	GO:0005506 (iron ion binding), GO:0042586 (peptide deformylase activity)
Niben101Scf11366g02023.1	AT2G28430.1	***-	unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=85		
Niben101Scf02407g12001.1	sp|Q86MW9|SINA_SCHMA	*-**	E3 ubiquitin-protein ligase sina	IPR004162 (E3 ubiquitin-protein ligase SINA like)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf04958g02011.1	AT1G51130.1	****	Nse4, component of Smc5/6 DNA repair complex LENGTH=403	IPR014854 (Non-structural maintenance of chromosome element 4, C-terminal), IPR027786 (Nse4/EID family)	GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0030915 (Smc5-Smc6 complex)
Niben101Scf36054g00002.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02515g00009.1	AT1G29690.1	***-	MAC/Perforin domain-containing protein LENGTH=561	IPR020864 (Membrane attack complex component/perforin (MACPF) domain)	
Niben101Scf01440g01013.1			Unknown protein		
Niben101Scf05629g01022.1	sp|Q9XE58|SCL14_ARATH	***-	Scarecrow-like protein 14	IPR005202 (Transcription factor GRAS)	
Niben101Scf12159g09019.1	sp|Q4QR06|PCGF1_XENLA	*-*-	Polycomb group RING finger protein 1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf01146g03012.1	emb|CDY15770.1|	--*-	BnaC04g15540D [Brassica napus]		
Niben101Scf02828g03012.1	AT2G01275.1	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=259	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022143 (Protein of unknown function DUF3675)	GO:0008270 (zinc ion binding)
Niben101Scf11751g01007.1	sp|A4PU48|METK_MEDTR	****	S-adenosylmethionine synthase	IPR002133 (S-adenosylmethionine synthetase)	GO:0004478 (methionine adenosyltransferase activity), GO:0005524 (ATP binding), GO:0006556 (S-adenosylmethionine biosynthetic process)
Niben101Ctg16484g00001.1	AT3G54700.1	****	phosphate transporter 1;7 LENGTH=535	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005315 (inorganic phosphate transmembrane transporter activity), GO:0006817 (phosphate ion transport), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf08724g02013.1	ref|NP_001042061.1|	***-	product [Oryza sativa Japonica Group]	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf07748g01001.1	sp|P37218|H1_SOLLC	*-*-	Histone H1	IPR005819 (Histone H5)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf01395g00017.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00398g04003.1	emb|CDY14703.1|	--*-	BnaC05g19600D [Brassica napus]		
Niben101Scf13828g01009.1	ref|NP_001047076.2|	*-*-	product [Oryza sativa Japonica Group] dbj|BAF08990.2| [Oryza sativa Japonica Group]		
Niben101Scf16022g03006.1	sp|Q9XJ60|MAD50_ORYSJ	****	MADS-box transcription factor 50	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf00393g03008.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03062g05003.1	sp|P81898|PNAA_PRUDU	***-	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A	IPR021102 (Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A)	
Niben101Scf00715g10009.1	sp|Q9S9N4|MRS21_ARATH	****	Magnesium transporter MRS2-1	IPR002523 (Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB), IPR026573 (Magnesium transporter MRS2/LPE10)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02390g02016.1	sp|Q29RM3|REEP5_BOVIN	***-	Receptor expression-enhancing protein 5	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf03600g02028.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11384g00026.1	sp|Q96T52|IMP2L_HUMAN	****	Mitochondrial inner membrane protease subunit 2	IPR000223 (Peptidase S26A, signal peptidase I), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane)
Niben101Ctg12852g00001.1	sp|O50017|PARP2_MAIZE	*-*-	Poly [ADP-ribose] polymerase 2	IPR004102 (Poly(ADP-ribose) polymerase, regulatory domain), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain)	GO:0003950 (NAD+ ADP-ribosyltransferase activity), GO:0006471 (protein ADP-ribosylation)
Niben101Scf01606g01003.1	AT5G24600.1	***-	Protein of unknown function, DUF599 LENGTH=248	IPR006747 (Protein of unknown function DUF599)	
Niben101Scf08478g01009.1	sp|Q5ZIN1|NUDC_CHICK	*-*-	Nuclear migration protein nudC	IPR008978 (HSP20-like chaperone)	
Niben101Scf03930g02028.1	ref|WP_024693985.1|	***-	thiol-disulfide oxidoreductase [Pseudomonas syringae]	IPR007263 (Protein of unknown function DUF393)	
Niben101Scf14542g00032.1	sp|Q9USQ6|SYJ2_SCHPO	*-**	Inositol-1,4,5-trisphosphate 5-phosphatase 2	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf00338g03004.1	sp|Q8H965|NPC6_ARATH	***-	Non-specific phospholipase C6	IPR007312 (Phosphoesterase), IPR017850 (Alkaline-phosphatase-like, core domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf13622g01006.1	gb|ADL36873.1|	*-*-	At1g62390-like protein [Arabidopsis lyrata subsp. lyrata]	IPR000270 (Phox/Bem1p), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02831g03016.1	emb|CDX70437.1|	***-	BnaC03g05210D [Brassica napus]	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf09057g01010.1	gb|KEH26285.1|	*-*-	heavy metal-associated domain protein [Medicago truncatula]		
Niben101Scf00168g06001.1	ref|WP_026797076.1|	***-	MULTISPECIES: hypothetical protein [Planktothrix]		
Niben101Scf00341g07001.1	AT3G09950.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=92		
Niben101Scf05308g01007.1	sp|A9UP22|WDR12_MONBE	****	Ribosome biogenesis protein WDR12 homolog	IPR012972 (NLE), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR028599 (WD repeat WDR12/Ytm1)	GO:0005515 (protein binding), GO:0042254 (ribosome biogenesis)
Niben101Scf02174g01006.1			Unknown protein		
Niben101Scf01269g13029.1	sp|Q9BBR5|PSBE_LOTJA	*-*-	Cytochrome b559 subunit alpha	IPR013082 (Photosystem II cytochrome b559, alpha subunit, lumenal region)	GO:0009523 (photosystem II), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf00170g01001.1			Unknown protein		
Niben101Scf12623g00009.1	gb|ABU50826.1|	*-*-	GAGA-binding transcriptional activator [Arabidopsis arenosa]	IPR010409 (GAGA-binding transcriptional activator)	
Niben101Scf00438g02041.1			Unknown protein		
Niben101Scf08606g00014.1	AT3G20050.1	***-	T-complex protein 1 alpha subunit LENGTH=545	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf00929g03011.1	ref|WP_013871318.1|	--*-	TonB-dependent receptor [Lacinutrix sp. 5H-3-7-4] ref|YP_004580967.1| TonB-dependent receptor plug [Lacinutrix sp. 5H-3-7-4] gb|AEH02539.1| TonB-dependent receptor plug [Lacinutrix sp. 5H-3-7-4]		
Niben101Scf01055g01009.1	AT3G26900.1	***-	shikimate kinase like 1 LENGTH=280	IPR000623 (Shikimate kinase/Threonine synthase-like 1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf08653g07034.1	sp|P28811|MMSB_PSEAE	****	3-hydroxyisobutyrate dehydrogenase	IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06249g02008.1	AT3G47520.1	****	malate dehydrogenase LENGTH=403	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf10776g00003.1	sp|Q91WD1|RPC4_MOUSE	*-**	DNA-directed RNA polymerase III subunit RPC4	IPR007811 (DNA-directed RNA polymerase III subunit RPC4)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005666 (DNA-directed RNA polymerase III complex), GO:0006383 (transcription from RNA polymerase III promoter)
Niben101Scf04664g00020.1	sp|Q945M1|NDUB9_ARATH	***-	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	IPR008011 (Complex 1 LYR protein)	
Niben101Scf06852g01001.1	AT5G06810.1	****	Mitochondrial transcription termination factor family protein LENGTH=1141	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10994g00002.1	sp|Q683I9|PP295_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04869g00002.1	AT3G26310.1	***-	cytochrome P450, family 71, subfamily B, polypeptide 35 LENGTH=500	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02494g05001.1	sp|Q9FHM9|EXOL3_ARATH	***-	Protein EXORDIUM-like 3	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf01779g03019.1	ref|NP_194330.1|	****	RNA-binding KH domain-containing protein PEPPER [Arabidopsis thaliana] emb|CAB39665.1| putative nucleic acid binding protein [Arabidopsis thaliana] emb|CAB79455.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAL07137.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAM20510.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAM45112.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AEE85142.1| RNA-binding KH domain-containing protein PEPPER [Arabidopsis thaliana]	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf03861g02018.1	sp|Q4IAA0|FAL1_GIBZE	****	ATP-dependent RNA helicase FAL1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf08272g00020.1	gb|AHD24760.1|	*-*-	Ycf1, partial (chloroplast) [Solanum cochabambense]		
Niben101Scf01293g05014.1	sp|Q9FLJ2|NC100_ARATH	*-*-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00010g05016.1	sp|A7I656|EF1A_METB6	***-	Elongation factor 1-alpha	IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal)	GO:0005525 (GTP binding)
Niben101Scf02319g06012.1	sp|Q8LFH7|RL371_ARATH	***-	60S ribosomal protein L37-1	IPR001569 (Ribosomal protein L37e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07073g03009.1	sp|Q8LCL8|CYT1B_ARATH	--*-	Cysteine-rich and transmembrane domain-containing protein B	IPR028144 (Cysteine-rich transmembrane CYSTM domain)	
Niben101Scf00511g00009.1	AT5G27000.1	****	kinesin 4 LENGTH=987	IPR001715 (Calponin homology domain), IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf09781g00018.1	sp|P38929|ATC2_YEAST	*-*-	Calcium-transporting ATPase 2	IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	
Niben101Scf25930g00003.1	emb|CDY25322.1|	*-*-	BnaC01g29910D [Brassica napus]	IPR021149 (Oligosaccharyl transferase complex, subunit OST3/OST6)	
Niben101Scf06342g01002.1	AT1G03920.1	****	Protein kinase family protein LENGTH=569	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf21107g00019.1	AT4G26510.1	****	uridine kinase-like 4 LENGTH=469	IPR000764 (Uridine kinase like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029057 (Phosphoribosyltransferase-like)	GO:0004849 (uridine kinase activity), GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0044206 (UMP salvage)
Niben101Scf05174g02001.1	AT1G07700.3	***-	Thioredoxin superfamily protein LENGTH=217	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf04440g00006.1	sp|Q9SIQ2|GDL44_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf08564g01010.1	gb|AAS07116.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf06155g01008.1	AT1G03670.1	***-	ankyrin repeat family protein LENGTH=616	IPR020683 (Ankyrin repeat-containing domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	GO:0005515 (protein binding)
Niben101Scf02475g04006.1	ref|XP_007030979.1|	*-*-	Trypsin family protein with PDZ domain isoform 4 [Theobroma cacao] gb|EOY11481.1| Trypsin family protein with PDZ domain isoform 4 [Theobroma cacao]	IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity)
Niben101Scf11355g01005.1	sp|Q6DD45|ZCHC8_XENLA	*-**	Zinc finger CCHC domain-containing protein 8	IPR001878 (Zinc finger, CCHC-type), IPR006568 (PSP, proline-rich)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02182g19004.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04083g01003.1	ref|XP_007039076.1|	***-	Ribonuclease P protein subunit P38-related isoform 2 [Theobroma cacao] gb|EOY23577.1| Ribonuclease P protein subunit P38-related isoform 2 [Theobroma cacao]		
Niben101Scf00741g01022.1	gb|KEH31712.1|	****	calmodulin-binding protein [Medicago truncatula]	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf03082g00003.1	AT3G06470.1	*-*-	GNS1/SUR4 membrane protein family LENGTH=278		
Niben101Scf02844g07003.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00833g04004.1			Unknown protein		
Niben101Scf00133g01004.1	gb|ABD66596.1|	****	iron-binding protein [Pyrus pyrifolia]	IPR001519 (Ferritin), IPR008331 (Ferritin/DPS protein domain), IPR009078 (Ferritin-like superfamily)	GO:0006826 (iron ion transport), GO:0006879 (cellular iron ion homeostasis), GO:0008199 (ferric iron binding)
Niben101Scf00109g02027.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05492g00001.1	AT3G07700.3	***-	Protein kinase superfamily protein LENGTH=724	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg07107g00002.1	sp|Q8KQB3|EFG_BARHE	*-*-	Elongation factor G	IPR009022 (Elongation factor G, III-V domain)	
Niben101Scf02175g06017.1	ref|NP_001051960.1|	***-	[Oryza sativa Japonica Group] dbj|BAF13874.1| [Oryza sativa Japonica Group]		
Niben101Scf02511g06004.1	sp|C5CES8|FTSH_KOSOT	****	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR005936 (Peptidase, FtsH), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf00703g05008.1			Unknown protein		
Niben101Scf00379g05004.1	sp|Q3T134|SPCS1_BOVIN	--**	Signal peptidase complex subunit 1	IPR009542 (Microsomal signal peptidase 12kDa subunit)	GO:0005787 (signal peptidase complex), GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf03374g01006.1	sp|Q9SHC8|VAP12_ARATH	***-	Vesicle-associated protein 1-2	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf04323g02021.1	sp|Q8VYJ1|MENE_ARATH	*-*-	2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal		
Niben101Scf02451g09003.1	AT2G39690.1	***-	Protein of unknown function, DUF547 LENGTH=498	IPR006869 (Domain of unknown function DUF547), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	
Niben101Scf03683g01004.1	AT2G39805.2	***-	Integral membrane Yip1 family protein LENGTH=276		
Niben101Scf04156g00011.1	sp|P70168|IMB1_MOUSE	***-	Importin subunit beta-1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf10519g01007.1	sp|Q9XEE9|ALG11_ARATH	***-	GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf01160g00005.1	sp|P27491|CB27_TOBAC	*-*-	Chlorophyll a-b binding protein 7, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf01352g01006.1			Unknown protein		
Niben101Scf01210g00002.1	gb|AFO69204.1|	****	ATPase subunit 8 (mitochondrion) [Gossypium hirsutum]	IPR003319 (ATP synthase YMF19-like, N-terminal), IPR009455 (ATP synthase YMF19, uncharacterised, C-terminal)	GO:0005739 (mitochondrion), GO:0016021 (integral component of membrane), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances)
Niben101Scf19138g00004.1	AT3G10970.1	***-	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=365	IPR023214 (HAD-like domain)	
Niben101Scf09994g00011.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00453g04007.1	AT3G50180.1	***-	Plant protein of unknown function (DUF247) LENGTH=588	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf39181g00002.1			Unknown protein		
Niben101Scf03283g01006.1	AT5G04060.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=600	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02375g01005.1	AT5G17870.1	***-	plastid-specific 50S ribosomal protein 6 LENGTH=106		
Niben101Scf09813g00013.1	sp|Q9CAM8|PP100_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06249g03003.1	gb|KEH33317.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00442g09009.1	sp|Q9FZ95|PUP3_ARATH	***-	Purine permease 3	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf01951g00028.1	AT3G11340.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=447	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00240g00004.1	sp|Q8WR51|OFUT2_CAEEL	*-*-	GDP-fucose protein O-fucosyltransferase 2	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf04869g07003.1	sp|O13787|SEC62_SCHPO	-**-	Translocation protein sec62	IPR004728 (Translocation protein Sec62)	GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf03279g03022.1			Unknown protein		
Niben101Scf14115g01012.1	sp|Q1PE04|FBL25_ARATH	***-	F-box/LRR-repeat protein 25	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05483g06001.1	AT3G22790.1	***-	Kinase interacting (KIP1-like) family protein LENGTH=1728	IPR011684 (KIP1-like)	
Niben101Scf04418g09017.1	AT2G35920.1	*-*-	RNA helicase family protein LENGTH=995		
Niben101Scf02793g26007.1			Unknown protein		
Niben101Scf05269g03028.1	sp|A6TXE5|MNME_ALKMQ	****	tRNA modification GTPase MnmE	IPR004520 (tRNA modification GTPase MnmE), IPR005225 (Small GTP-binding protein domain), IPR025867 (tRNA modification GTPase MnmE C-terminal domain), IPR027266 (GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1), IPR027368 (tRNA modification GTPase MnmE domain 2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005515 (protein binding), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006400 (tRNA modification)
Niben101Scf05830g06009.1	sp|O66937|MALQ_AQUAE	****	4-alpha-glucanotransferase	IPR003385 (Glycoside hydrolase, family 77), IPR017853 (Glycoside hydrolase superfamily)	GO:0004134 (4-alpha-glucanotransferase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02665g04014.1	sp|Q304B9|NCASE_ARATH	***-	Neutral ceramidase	IPR006823 (Neutral/alkaline nonlysosomal ceramidase)	
Niben101Scf09816g00003.1	sp|P0CQ97|SUB2_CRYNB	*-*-	ATP-dependent RNA helicase SUB2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf12159g00008.1	sp|Q9SY03|FB219_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf06493g00003.1	sp|Q5SWK7|RN145_MOUSE	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03886g02008.1			Unknown protein		
Niben101Scf01964g01008.1	sp|Q6AXL8|ZMAT5_DANRE	****	Zinc finger matrin-type protein 5	IPR000571 (Zinc finger, CCCH-type), IPR003604 (Zinc finger, U1-type), IPR013085 (Zinc finger, U1-C type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf09960g00009.1	sp|Q86TP1|PRUNE_HUMAN	--*-	Protein prune homolog		
Niben101Scf08597g01026.1	AT1G05020.1	*-*-	ENTH/ANTH/VHS superfamily protein LENGTH=653	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf05948g03014.1	AT4G18830.1	*-*-	ovate family protein 5 LENGTH=349	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf04412g00009.1			Unknown protein		
Niben101Scf06499g01017.1	AT1G51560.1	***-	Pyridoxamine 5'-phosphate oxidase family protein LENGTH=392	IPR012349 (FMN-binding split barrel)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03374g04004.1	AT3G60690.1	***-	SAUR-like auxin-responsive protein family LENGTH=170	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00318g03013.1	gb|ABA94311.1|	*-*-	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]		
Niben101Scf00240g00003.1			Unknown protein		
Niben101Scf00712g09033.1	sp|Q9C8E7|GLR33_ARATH	*-*-	Glutamate receptor 3.3	IPR028082 (Periplasmic binding protein-like I)	
Niben101Scf33318g00005.1	emb|CDY18681.1|	-**-	BnaA09g07140D [Brassica napus]	IPR008004 (Uncharacterised protein family UPF0503)	
Niben101Scf20773g01022.1	dbj|GAE27093.1|	****	GTP-binding protein YqeH [Bacillus wakoensis JCM 9140]	IPR006073 (GTP binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf07400g00016.1	sp|P09274|PAP_VZVD	--*-	DNA polymerase processivity factor		
Niben101Scf05350g02007.1	sp|O81832|Y4729_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain)	
Niben101Scf28488g00003.1	sp|Q0DCM5|MAN6_ORYSJ	***-	Mannan endo-1,4-beta-mannosidase 6	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08841g00004.1	sp|Q9LPL5|ODBA1_ARATH	--*-	2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial		
Niben101Scf25598g00007.1	sp|C6XAK0|NUON_METGS	*-*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf02155g02012.1			Unknown protein		
Niben101Scf01124g15007.1	gb|ABA99010.1|	--*-	expressed protein [Oryza sativa Japonica Group] gb|EAZ20576.1| hypothetical protein OsJ_36185 [Oryza sativa Japonica Group]		
Niben101Scf00854g11083.1	ref|XP_003606050.1|	*-*-	A subunit of NADH dehydrogenase [Medicago truncatula] gb|AES88247.1| proton-translocating NADH-quinone oxidoreductase, protein [Medicago truncatula]		
Niben101Scf04395g00022.1	sp|P84227|H32_BOVIN	***-	Histone H3.2	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf11694g00001.1	sp|Q3AZK4|CH10_SYNS9	*-*-	10 kDa chaperonin	IPR020818 (Chaperonin Cpn10)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding)
Niben101Scf03929g04002.1	sp|B0JXB7|UCRI_MICAN	****	Cytochrome b6-f complex iron-sulfur subunit	IPR014349 (Rieske iron-sulphur protein), IPR014909 (Cytochrome b6-f complex Fe-S subunit), IPR023960 (Cytochrome b6-f complex iron-sulfur subunit)	GO:0008121 (ubiquinol-cytochrome-c reductase activity), GO:0009496 (plastoquinol--plastocyanin reductase activity), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0016679 (oxidoreductase activity, acting on diphenols and related substances as donors), GO:0042651 (thylakoid membrane), GO:0045158 (electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04558g00002.1	AT2G27080.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=260	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf06125g00016.1	sp|P82735|DF156_ARATH	-**-	Defensin-like protein 156		
Niben101Scf10919g01035.1	sp|Q9T0J6|DUS3L_ARATH	****	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	IPR000571 (Zinc finger, CCCH-type), IPR001269 (tRNA-dihydrouridine synthase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008033 (tRNA processing), GO:0017150 (tRNA dihydrouridine synthase activity), GO:0046872 (metal ion binding), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06442g00026.1			Unknown protein		
Niben101Scf03785g00013.1	sp|Q9LTV8|PP224_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Ctg11463g00002.1	sp|O28000|RS4_ARCFU	*-**	30S ribosomal protein S4	IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0006412 (translation), GO:0015935 (small ribosomal subunit), GO:0019843 (rRNA binding)
Niben101Scf01225g04027.1	sp|Q8H1Q2|NBP35_ARATH	*-*-	Cytosolic Fe-S cluster assembly factor NBP35	IPR002586 (CobQ/CobB/MinD/ParA nucleotide binding domain), IPR019591 (Mrp/NBP35 ATP-binding protein), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf23113g01014.1	sp|O84296|SODM_CHLTR	****	Superoxide dismutase [Mn]	IPR001189 (Manganese/iron superoxide dismutase)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00854g05038.1	sp|Q21YB7|NUOK_RHOFT	--**	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K), IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf00428g17012.1	ref|XP_002531216.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF31152.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02929g02021.1	sp|A7IPQ7|RS14_XANP2	--*-	30S ribosomal protein S14	IPR001209 (Ribosomal protein S14)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf21257g00014.1	sp|Q74F05|NQOR_GEOSL	***-	NAD(P)H dehydrogenase (quinone)	IPR010089 (Flavoprotein WrbA), IPR029039 (Flavoprotein-like)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0045892 (negative regulation of transcription, DNA-templated)
Niben101Scf00911g06010.1	sp|P13682|ZNF35_HUMAN	--*-	Zinc finger protein 35	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR022755 (Zinc finger, double-stranded RNA binding)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf13308g00004.1	AT5G53130.1	****	cyclic nucleotide gated channel 1 LENGTH=716	IPR005821 (Ion transport domain), IPR014710 (RmlC-like jelly roll fold)	GO:0005216 (ion channel activity), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf06823g00019.1	gb|KEH44031.1|	*-**	transcriptional regulator of RNA polII, SAGA, subunit [Medicago truncatula]	IPR024738 (Transcriptional coactivator Hfi1/Transcriptional adapter 1)	GO:0070461 (SAGA-type complex)
Niben101Scf06889g00007.1	gb|AID55053.1|	*-*-	disease resistance protein, partial [Solanum habrochaites]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf07231g08006.1	sp|P81392|MYB06_ANTMA	***-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06016g08006.1	sp|Q9SSV4|INO1_NICPA	****	Inositol-3-phosphate synthase	IPR002587 (Myo-inositol-1-phosphate synthase)	GO:0004512 (inositol-3-phosphate synthase activity), GO:0006021 (inositol biosynthetic process), GO:0008654 (phospholipid biosynthetic process)
Niben101Scf04664g03006.1	sp|P17093|RS11_SOYBN	***-	40S ribosomal protein S11	IPR000266 (Ribosomal protein S17), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03685g00004.1	sp|A1JPA1|MDTK_YERE8	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Ctg06174g00001.1	ref|NP_001233978.1|	*-*-	extensin-like protein Dif54 precursor [Solanum lycopersicum] emb|CAA67814.1| extensin-like protein Dif54 [Solanum lycopersicum]		
Niben101Scf01888g05001.1	gb|ABD28646.1|	*-**	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain), IPR026960 (Reverse transcriptase zinc-binding domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf07599g00016.1			Unknown protein		
Niben101Scf01638g01003.1	ref|NP_197212.2|	--*-	Cystatin/monellin superfamily protein [Arabidopsis thaliana] gb|AAX55193.1| hypothetical protein [Arabidopsis thaliana] gb|AAZ52754.1| hypothetical protein [Arabidopsis thaliana] gb|AED92383.1| Cystatin/monellin superfamily protein [Arabidopsis thaliana]		
Niben101Scf02737g03002.1	AT3G18670.1	***-	Ankyrin repeat family protein LENGTH=598	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	GO:0005515 (protein binding)
Niben101Scf00825g02024.1	AT1G29520.1	***-	AWPM-19-like family protein LENGTH=158	IPR008390 (AWPM-19-like)	
Niben101Scf09555g04001.1	AT1G12250.1	***-	Pentapeptide repeat-containing protein LENGTH=280	IPR001646 (Pentapeptide repeat)	
Niben101Scf11389g01027.1	ref|WP_025946871.1|	***-	MULTISPECIES: ribonuclease P [Prochlorococcus]	IPR005182 (Domain of unknown function DUF304)	
Niben101Scf02475g08006.1			Unknown protein		
Niben101Scf05682g01006.1	ref|XP_003591246.1|	--*-	Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf00390g05022.1	sp|Q9LFT0|TBL19_ARATH	***-	Protein trichome birefringence-like 19	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf09360g02005.1	AT2G31920.1	***-	Plant protein of unknown function (DUF936) LENGTH=585	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Scf02517g04004.1	AT1G48110.1	*-*-	evolutionarily conserved C-terminal region 7 LENGTH=639		
Niben101Scf01814g00003.1	sp|A2SDN6|GPMA_METPP	*-*-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	IPR001345 (Phosphoglycerate/bisphosphoglycerate mutase, active site), IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf05697g01001.1	sp|Q9KDD4|MTNN_BACHD	***-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	IPR018017 (Nucleoside phosphorylase)	GO:0003824 (catalytic activity), GO:0009116 (nucleoside metabolic process)
Niben101Scf10316g02003.1	sp|Q06795|NUSG_BACSU	-***	Transcription termination/antitermination protein NusG	IPR006645 (NusG, N-terminal), IPR008991 (Translation protein SH3-like domain)	GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05112g00009.1	ref|WP_025927009.1|	--*-	MULTISPECIES: hypothetical protein [Prochlorococcus]	IPR021489 (Protein of unknown function DUF3143)	
Niben101Scf01061g08030.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02297g01007.1	sp|Q9SU13|FLA2_ARATH	*-*-	Fasciclin-like arabinogalactan protein 2		
Niben101Scf04890g00003.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02056g02002.1	sp|Q9SKX1|IBH1_ARATH	***-	Transcription factor IBH1		
Niben101Scf02749g04007.1	sp|Q4VYC8|NSP1_MEDTR	***-	Nodulation-signaling pathway 1 protein	IPR005202 (Transcription factor GRAS), IPR030015 (Scarecrow-like protein 29/nodulation signalling pathway 1)	
Niben101Scf09577g01010.1	ref|XP_007044529.1|	***-	RNase H family protein, putative isoform 3 [Theobroma cacao] gb|EOY00361.1| RNase H family protein, putative isoform 3 [Theobroma cacao]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf02860g02002.1	AT5G15170.1	****	tyrosyl-DNA phosphodiesterase-related LENGTH=605	IPR008984 (SMAD/FHA domain), IPR010347 (Tyrosyl-DNA phosphodiesterase I), IPR027415 (Tyrosyl-DNA phosphodiesterase C-terminal domain)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Scf04024g01005.1	AT4G13050.1	***-	Acyl-ACP thioesterase LENGTH=367	IPR002864 (Acyl-ACP thioesterase), IPR029069 (HotDog domain)	GO:0006633 (fatty acid biosynthetic process), GO:0016790 (thiolester hydrolase activity)
Niben101Scf00167g03015.1	sp|Q9UZK1|ARLMC_PYRAB	*-**	23S rRNA (uracil(747)-C(5))-methyltransferase	IPR004398 (RNA methyltransferase, RsmD), IPR010280 ((Uracil-5)-methyltransferase family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006396 (RNA processing), GO:0008168 (methyltransferase activity), GO:0008173 (RNA methyltransferase activity), GO:0031167 (rRNA methylation)
Niben101Scf03600g01003.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR018392 (LysM domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00192g01021.1	sp|P42753|CCD31_ARATH	***-	Cyclin-D3-1	IPR013763 (Cyclin-like)	
Niben101Scf00144g00003.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf04654g03022.1	sp|Q8GY42|NAC25_ARATH	--**	NAC transcription factor 25	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07152g02004.1	AT5G04320.2	*-*-	Shugoshin C terminus LENGTH=470	IPR011515 (Shugoshin, C-terminal)	GO:0000775 (chromosome, centromeric region), GO:0005634 (nucleus), GO:0045132 (meiotic chromosome segregation)
Niben101Scf01219g03012.1	AT2G33380.1	*-*-	Caleosin-related family protein LENGTH=236	IPR007736 (Caleosin)	
Niben101Scf03226g03002.1	sp|Q9FF55|PDI14_ARATH	****	Protein disulfide isomerase-like 1-4	IPR005792 (Protein disulphide isomerase), IPR012336 (Thioredoxin-like fold)	GO:0005783 (endoplasmic reticulum), GO:0016853 (isomerase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf15907g00005.1	AT4G35690.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=284	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf13268g00003.1	AT3G09520.1	****	exocyst subunit exo70 family protein H4 LENGTH=628	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf01516g00003.1	gb|KEH30367.1|	*-*-	structural constituent of ribosome protein [Medicago truncatula]		
Niben101Ctg09236g00002.1	sp|Q9ZQG9|E1314_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 14	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03285g00001.1	ref|XP_007020660.1|	*-*-	Acyltransferase, putative [Theobroma cacao] gb|EOY12185.1| Acyltransferase, putative [Theobroma cacao]		
Niben101Scf03371g02024.1	AT3G26680.1	*-*-	DNA repair metallo-beta-lactamase family protein LENGTH=484		
Niben101Scf02390g02017.1	gb|AFW71223.1|	*-*-	meiosis 5 [Zea mays]		
Niben101Scf05029g00003.1	sp|Q21MC3|PUR5_SACD2	****	Phosphoribosylformylglycinamidine cyclo-ligase	IPR004733 (Phosphoribosylformylglycinamidine cyclo-ligase), IPR016188 (PurM, N-terminal-like)	GO:0003824 (catalytic activity), GO:0004641 (phosphoribosylformylglycinamidine cyclo-ligase activity), GO:0005737 (cytoplasm), GO:0006189 ('de novo' IMP biosynthetic process)
Niben101Scf05099g01002.1	AT4G16160.2	***-	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein LENGTH=178	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Scf24096g00034.1	sp|Q9FMY5|U2AFB_ARATH	***-	Splicing factor U2af small subunit B	IPR009145 (U2 auxiliary factor small subunit), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0046872 (metal ion binding)
Niben101Scf03187g00008.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03867g02039.1	ref|XP_003611310.1|	--*-	Cys2/His2 zinc-finger transcription factor [Medicago truncatula] gb|AES94268.1| zinc finger ZAT9-like protein [Medicago truncatula]	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf06139g00001.1	sp|C3MZB8|RL11_SULIA	***-	50S ribosomal protein L11	IPR000911 (Ribosomal protein L11/L12)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08679g02001.1	sp|Q8VYI9|NLTL5_ARATH	*-*-	Non-specific lipid-transfer protein-like protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf03133g01013.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03670g04022.1	sp|Q9FMP8|RGAP6_ARATH	***-	Rho GTPase-activating protein 6	IPR008936 (Rho GTPase activation protein), IPR011993 (Pleckstrin homology-like domain), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf03939g05010.1	sp|Q9FL12|DEGP9_ARATH	***-	Protease Do-like 9	IPR001940 (Peptidase S1C), IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity), GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf08478g03010.1	gb|ABF99416.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf07883g02001.1	sp|Q54BM2|PAP1A_DICDI	*-**	Polyadenylate-binding protein 1-A	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04954g03006.1	sp|Q9LYW0|Y5325_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf01433g08027.1	sp|Q9SD33|U183_ARATH	***-	UPF0183 protein	IPR005373 (Uncharacterised protein family UPF0183)	
Niben101Scf01681g03012.1	AT3G59660.1	*-*-	C2 domain-containing protein / GRAM domain-containing protein LENGTH=594		
Niben101Scf00161g00005.1	sp|Q1RJX3|ODPB_RICBR	*-**	Pyruvate dehydrogenase E1 component subunit beta	IPR005475 (Transketolase-like, pyrimidine-binding domain), IPR027110 (Pyruvate dehydrogenase E1 component subunit beta), IPR029061 (Thiamin diphosphate-binding fold)	GO:0004739 (pyruvate dehydrogenase (acetyl-transferring) activity), GO:0006086 (acetyl-CoA biosynthetic process from pyruvate)
Niben101Scf04535g02012.1	sp|P80284|PDI_HORVU	--*-	Protein disulfide-isomerase	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf17137g00006.1	AT2G44430.1	****	DNA-binding bromodomain-containing protein LENGTH=646	IPR001487 (Bromodomain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf12314g00004.1	AT4G16110.1	*-*-	response regulator 2 LENGTH=664	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf06369g01016.1			Unknown protein		
Niben101Scf04133g02004.1	sp|Q9MAC5|PTBP1_ARATH	****	Polypyrimidine tract-binding protein homolog 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01440g01012.1	AT5G47430.1	****	DWNN domain, a CCHC-type zinc finger LENGTH=892	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014891 (DWNN domain)	GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf03218g00007.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf08926g08030.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01109g04016.1	ref|XP_002524424.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF37959.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02744g00012.1	sp|Q8RYC8|ARFS_ARATH	*-**	Auxin response factor 19	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf02029g00006.1	sp|O49399|PP321_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07785g00003.1			Unknown protein		
Niben101Scf06091g00014.1	sp|P55088|AQP4_MOUSE	***-	Aquaporin-4	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00491g00002.1	ref|XP_007036529.1|	***-	Checkpoint serine/threonine-protein kinase BUB1, putative isoform 2 [Theobroma cacao] gb|EOY21030.1| Checkpoint serine/threonine-protein kinase BUB1, putative isoform 2 [Theobroma cacao]	IPR008195 (Ribosomal protein L34Ae), IPR012870 (Protein of unknown function DUF1666)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf29810g00012.1			Unknown protein		
Niben101Scf05830g04010.1	sp|Q9SIZ8|RKP_ARATH	*-*-	E3 ubiquitin-protein ligase RKP		
Niben101Scf04988g02019.1	sp|Q9FN67|Y5133_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0051260 (protein homooligomerization)
Niben101Scf12848g00007.1	sp|P81748|MIFH_TRITR	***-	Macrophage migration inhibitory factor homolog	IPR001398 (Macrophage migration inhibitory factor), IPR014347 (Tautomerase/MIF superfamily)	
Niben101Scf04706g00004.1	AT4G38070.1	*-*-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=1513		
Niben101Scf03392g11006.1	AT4G19410.1	***-	Pectinacetylesterase family protein LENGTH=391	IPR004963 (Protein notum homologue), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02827g05017.1	sp|Q0WQF4|VP53A_ARATH	***-	Vacuolar protein sorting-associated protein 53 A	IPR007234 (Vps53-like, N-terminal)	
Niben101Scf12415g00012.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf00854g09078.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf08072g00015.1	sp|Q9NYP3|DONS_HUMAN	*-*-	Protein downstream neighbor of Son	IPR024861 (Donson)	
Niben101Scf02738g05007.1	AT3G30390.1	***-	Transmembrane amino acid transporter family protein LENGTH=460	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf04987g00003.1	AT1G55190.1	***-	PRA1 (Prenylated rab acceptor) family protein LENGTH=189	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf01795g02010.1	AT1G54650.2	***-	Methyltransferase family protein LENGTH=301	IPR026113 (Methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf07987g01040.1	ref|XP_003588403.1|	*-*-	S1 ribosomal protein [Medicago truncatula]		
Niben101Scf07072g01004.1	gb|ABY59208.1|	*-*-	[Arabidopsis thaliana]		
Niben101Scf06849g00028.1			Unknown protein		
Niben101Scf03265g00009.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06291g00001.1	AT5G04870.1	****	calcium dependent protein kinase 1 LENGTH=610	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01534g00006.1	sp|Q9FGY9|PNG1_ARATH	***-	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase	IPR018325 (Rad4/PNGase transglutaminase-like fold), IPR029071 (Ubiquitin-related domain)	GO:0003684 (damaged DNA binding), GO:0005634 (nucleus), GO:0006289 (nucleotide-excision repair)
Niben101Scf01402g02026.1	gb|ABA99135.2|	***-	seed maturation protein PM23, putative, expressed [Oryza sativa Japonica Group]	IPR008479 (Protein of unknown function DUF760)	
Niben101Scf03062g07006.1	sp|Q9ZUA2|PP141_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03535g00005.1	AT2G36885.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 172 Blast hits to 172 proteins in 58 species: Archae - 0; Bacteria - 116; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). LENGTH=256		
Niben101Scf02830g02030.1	AT5G07900.1	****	Mitochondrial transcription termination factor family protein LENGTH=405	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02827g07012.1	ref|NP_001062633.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf11084g01004.1	ref|XP_007028707.1|	-**-	MICAL C-terminal-like protein, putative [Theobroma cacao] gb|EOY09209.1| MICAL C-terminal-like protein, putative [Theobroma cacao]		
Niben101Scf00631g01020.1	sp|A2BN38|RS12_HYPBU	****	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf02750g03002.1	sp|B6ISW8|NUON_RHOCS	*-*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf18730g00030.1	ref|WP_019463119.1|	--*-	MULTISPECIES: hypothetical protein [Roseomonas]	IPR007434 (Protein of unknown function DUF482)	
Niben101Scf00438g00012.1			Unknown protein		
Niben101Scf03941g01010.1	ref|XP_007015731.1|	--*-	Peptidyl-prolyl cis-trans isomerase G [Theobroma cacao] gb|EOY33350.1| Peptidyl-prolyl cis-trans isomerase G [Theobroma cacao]		
Niben101Scf06026g01006.1	AT5G15350.1	***-	early nodulin-like protein 17 LENGTH=172	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf00173g04010.1	AT2G36300.1	****	Integral membrane Yip1 family protein LENGTH=255	IPR006977 (Yip1 domain)	GO:0016020 (membrane)
Niben101Scf08419g00018.1	ref|XP_007025667.1|	***-	Tetratricopeptide repeat-like superfamily protein, putative isoform 2 [Theobroma cacao] gb|EOY28289.1| Tetratricopeptide repeat-like superfamily protein, putative isoform 2 [Theobroma cacao]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03398g06007.1	AT4G37790.1	*-*-	Homeobox-leucine zipper protein family LENGTH=278	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01374g03037.1	sp|Q9LXG3|PER56_ARATH	****	Peroxidase 56	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00546g00006.1	sp|Q55721|FBT_SYNY3	***-	Folate-biopterin transporter	IPR004324 (Folate-biopterin transporter), IPR020846 (Major facilitator superfamily domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf01409g12019.1	sp|Q6CJI0|SLT11_KLULA	*-*-	Pre-mRNA-splicing factor SLT11	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf03070g08003.1			Unknown protein		
Niben101Scf09584g00009.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf11724g02001.1	AT2G40815.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=367	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf05158g01015.1	AT1G15550.1	*-*-	gibberellin 3-oxidase 1 LENGTH=358	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf05605g00043.1	sp|Q04716|RT03_PETHY	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf04933g00008.1	sp|I1SSI5|MAX2A_PETHY	***-	F-box/LRR-repeat MAX2 homolog A		
Niben101Scf01150g02009.1	sp|P84227|H32_BOVIN	***-	Histone H3.2	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	
Niben101Scf00119g09014.1			Unknown protein		
Niben101Scf00332g01004.1	ref|XP_002515317.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF47301.1| conserved hypothetical protein [Ricinus communis]	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf00705g03019.1	sp|P92999|GL118_ARATH	***-	Germin-like protein subfamily 1 member 18	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf01225g03012.1	ref|XP_002312206.2|	*-**	calcium-binding EF hand family protein [Populus trichocarpa] gb|EEE89573.2| calcium-binding EF hand family protein [Populus trichocarpa]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02155g03018.1	AT4G02480.1	*-*-	AAA-type ATPase family protein LENGTH=1265	IPR008984 (SMAD/FHA domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf04110g01002.1	emb|CDY24730.1|	*-*-	BnaC04g13350D [Brassica napus]		
Niben101Scf02459g02009.1	AT4G10170.1	***-	SNARE-like superfamily protein LENGTH=254	IPR011012 (Longin-like domain)	GO:0006810 (transport)
Niben101Scf00884g00017.1	sp|Q9Z1A9|TBCD8_MOUSE	*-*-	TBC1 domain family member 8	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf03563g00015.1	sp|Q9SJ81|FLA7_ARATH	*-*-	Fasciclin-like arabinogalactan protein 7	IPR000782 (FAS1 domain)	
Niben101Scf01711g01005.1	sp|Q8S9L6|CRK29_ARATH	*-**	Cysteine-rich receptor-like protein kinase 29	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03341g05013.1			Unknown protein		
Niben101Scf01269g17013.1	emb|CDX73934.1|	*-*-	BnaA03g31130D [Brassica napus]	IPR010605 (Protein of unknown function DUF1191)	
Niben101Scf08200g05007.1	sp|Q7TNN8|LPIN3_MUSSP	*-*-	Phosphatidate phosphatase LPIN3	IPR007651 (Lipin, N-terminal), IPR013209 (LNS2, Lipin/Ned1/Smp2), IPR023214 (HAD-like domain)	
Niben101Scf09005g01007.1	sp|O65888|NLTP_STRHE	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf00451g03020.1	sp|A1XQR9|RUXE_PIG	***-	Small nuclear ribonucleoprotein E	IPR010920 (Like-Sm (LSM) domain), IPR027078 (Small nuclear ribonucleoprotein E)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf04629g03007.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf17635g01019.1	sp|Q6ICB0|DESI1_HUMAN	***-	Desumoylating isopeptidase 1	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf00530g11009.1	sp|Q9Y6U7|RN215_HUMAN	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf16114g00006.1	sp|Q0WP01|PTR9_ARATH	***-	Protein NRT1/ PTR FAMILY 5.10	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf06383g01007.1	AT1G09160.2	***-	Protein phosphatase 2C family protein LENGTH=428	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf13478g00002.1	sp|Q9C810|Y1342_ARATH	***-	PHD finger protein	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf06958g03022.1			Unknown protein		
Niben101Scf12540g00009.1	emb|CDY19876.1|	*-*-	BnaC09g31420D [Brassica napus]		
Niben101Scf04362g00010.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Ctg15535g00002.1	AT3G29400.1	****	exocyst subunit exo70 family protein E1 LENGTH=658	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf03953g03023.1	sp|Q8BNU0|ARMC6_MOUSE	*-*-	Armadillo repeat-containing protein 6	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf08921g01013.1	gb|AAC23765.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf00606g03007.1	ref|WP_019477901.1|	***-	alpha/beta hydrolase [Prochlorococcus sp. W8]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05926g02002.1	gb|AAD10242.1|	*-*-	histidyl-tRNA synthetase [Triticum aestivum]		
Niben101Scf09141g02004.1	sp|P81748|MIFH_TRITR	***-	Macrophage migration inhibitory factor homolog	IPR001398 (Macrophage migration inhibitory factor), IPR014347 (Tautomerase/MIF superfamily)	
Niben101Scf05554g01008.1	sp|P93354|H2B_TOBAC	***-	Histone H2B	IPR009072 (Histone-fold)	GO:0046982 (protein heterodimerization activity)
Niben101Scf10036g01003.1	sp|Q5PAR3|NUOD_ANAMM	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04871g11017.1	emb|CDX74355.1|	***-	BnaA03g26920D [Brassica napus]		
Niben101Scf05043g01010.1	sp|Q3BAQ6|ATPF_PHAAO	--**	ATP synthase subunit b, chloroplastic	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf01739g08021.1	sp|Q9ZQX4|VATF_ARATH	****	V-type proton ATPase subunit F	IPR008218 (ATPase, V1 complex, subunit F)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033180 (proton-transporting V-type ATPase, V1 domain), GO:0034220 (ion transmembrane transport), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf00960g01013.1	sp|Q9FY79|LAC14_ARATH	***-	Laccase-14	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01434g01009.1	ref|WP_029882935.1|	--*-	alpha/beta hydrolase [Enterobacter sp. T1-1]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00339g08002.1	sp|O26680|DHQS_METTH	****	3-dehydroquinate synthase	IPR002812 (3-dehydroquinate synthase)	GO:0003856 (3-dehydroquinate synthase activity), GO:0009073 (aromatic amino acid family biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06218g00009.1	sp|Q6DJ78|BRE_XENTR	***-	BRCA1-A complex subunit BRE	IPR010358 (Brain/reproductive organ-expressed protein)	
Niben101Scf03283g00004.1	AT2G41370.1	***-	Ankyrin repeat family protein / BTB/POZ domain-containing protein LENGTH=491	IPR011333 (BTB/POZ fold), IPR020683 (Ankyrin repeat-containing domain), IPR024228 (Domain of unknown function DUF3420)	GO:0005515 (protein binding)
Niben101Scf05929g06003.1	sp|A1WVR6|GATB_HALHL	***-	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	IPR017959 (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E)	GO:0016874 (ligase activity), GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf02805g02010.1	sp|O23144|PPI1_ARATH	*-*-	Proton pump-interactor 1		
Niben101Scf03422g02005.1	sp|Q75JQ3|PEX2_DICDI	*-*-	Peroxisome biogenesis factor 2	IPR006845 (Pex, N-terminal)	
Niben101Scf07383g11004.1	sp|Q6CIN0|CLU_KLULA	--*-	Clustered mitochondria protein homolog		
Niben101Scf19307g00002.1	AT2G15580.1	***-	RING/U-box superfamily protein LENGTH=196		
Niben101Scf03365g05028.1	AT1G04030.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=434		
Niben101Scf00712g14003.1	AT1G20640.1	***-	Plant regulator RWP-RK family protein LENGTH=844	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain)	GO:0005515 (protein binding)
Niben101Scf02290g02013.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10162g02020.1	sp|A5CVR5|HIS8_VESOH	*-**	Histidinol-phosphate aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016846 (carbon-sulfur lyase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00467g00015.1	emb|CDY64700.1|	***-	BnaCnng44560D [Brassica napus]		
Niben101Scf00525g01005.1	sp|Q5ZKF6|5NT3B_CHICK	****	7-methylguanosine phosphate-specific 5'-nucleotidase	IPR006434 (Pyrimidine 5'-nucleotidase, eukaryotic), IPR023214 (HAD-like domain)	GO:0000287 (magnesium ion binding), GO:0005737 (cytoplasm), GO:0008253 (5'-nucleotidase activity)
Niben101Scf05519g02015.1	ref|XP_002512815.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF49318.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01752g09001.1	sp|Q9MAU3|TAF6_ARATH	****	Transcription initiation factor TFIID subunit 6	IPR009072 (Histone-fold), IPR011442 (Domain of unknown function DUF1546), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005634 (nucleus), GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity), GO:0051090 (regulation of sequence-specific DNA binding transcription factor activity)
Niben101Scf02211g02010.1	gb|AAU95271.1|	***-	R1 [Solanum tuberosum]	IPR002182 (NB-ARC), IPR021929 (Late blight resistance protein R1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf05678g02002.1			Unknown protein		
Niben101Scf02041g02007.1	sp|Q39068|CCB21_ARATH	****	Cyclin-B2-1	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf03986g01003.1	sp|A8E5V7|NAA60_XENTR	****	N-alpha-acetyltransferase 60	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf08566g02009.1	AT3G19920.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=416		
Niben101Scf02650g00001.1	sp|Q3C1I9|CEMA_NICSY	*-**	Chloroplast envelope membrane protein	IPR004282 (Chloroplast envelope membrane protein, CemA)	GO:0016021 (integral component of membrane)
Niben101Scf03427g10004.1	gb|EMT05353.1|	*-*-	Werner syndrome ATP-dependent helicase [Aegilops tauschii]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf05002g02004.1	sp|Q570U6|EF4L4_ARATH	***-	Protein ELF4-LIKE 4	IPR009741 (Protein of unknown function DUF1313)	
Niben101Scf03197g03007.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	
Niben101Scf10927g00019.1	AT2G07749.1	*-*-	Mitovirus RNA-dependent RNA polymerase LENGTH=246	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf03693g01007.1	AT5G66770.1	***-	GRAS family transcription factor LENGTH=584	IPR005202 (Transcription factor GRAS)	
Niben101Scf03676g02012.1	sp|Q8BYI6|PCAT2_MOUSE	***-	Lysophosphatidylcholine acyltransferase 2	IPR002123 (Phospholipid/glycerol acyltransferase), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding), GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf02582g04002.1	emb|CDY48085.1|	*-*-	BnaC06g02490D [Brassica napus]		
Niben101Scf10036g02010.1	ref|XP_002516081.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF46501.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01964g02004.1	gb|ACG49166.1|	***-	structural constituent of ribosome [Zea mays]	IPR016082 (Ribosomal protein L30, ferredoxin-like fold domain)	
Niben101Scf03238g00010.1	sp|O23969|SF21_HELAN	*-*-	Pollen-specific protein SF21	IPR004142 (NDRG), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02190g04003.1	AT2G31820.1	***-	Ankyrin repeat family protein LENGTH=662	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf01445g02011.1	sp|Q940X7|RBX1A_ARATH	*-*-	RING-box protein 1a	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf01505g02006.1	sp|Q93Z24|BGA17_ARATH	****	Beta-galactosidase 17	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004565 (beta-galactosidase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05229g04023.1	AT2G46420.1	***-	Plant protein 1589 of unknown function LENGTH=363	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf00571g00009.1	sp|Q9FIA1|GDL87_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01020g06003.1	sp|P59706|PSBZ_ATRBE	****	Photosystem II reaction center protein Z	IPR002644 (Photosystem II PsbZ, reaction centre)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0015979 (photosynthesis), GO:0042549 (photosystem II stabilization)
Niben101Scf07579g01009.1	sp|O80647|PP195_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf03335g00003.1	emb|CAA40877.1|	*-*-	ScoxII [Beta vulgaris subsp. vulgaris]		
Niben101Ctg10862g00003.1	AT1G18730.1	*-*-	NDH dependent flow 6 LENGTH=175		
Niben101Scf07554g02007.1	ref|WP_033140388.1|	*-*-	spermidine synthase [Blautia producta]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf08566g02005.1	AT1G34750.1	***-	Protein phosphatase 2C family protein LENGTH=282	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf21083g00001.1	sp|Q9FNL2|PP418_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07030g05007.1	sp|Q59MG1|DPH1_CANAL	*-**	Diphthamide biosynthesis protein 1	IPR002728 (Diphthamide synthesis, DPH1/DPH2)	GO:0005737 (cytoplasm), GO:0017183 (peptidyl-diphthamide biosynthetic process from peptidyl-histidine)
Niben101Scf01181g02003.1	sp|P93003|TFL1_ARATH	***-	Protein TERMINAL FLOWER 1	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf04132g04003.1	sp|Q8VYE4|PTR12_ARATH	--*-	Protein NRT1/ PTR FAMILY 4.5		
Niben101Scf01986g00021.1	sp|Q2NQV7|HLDD_SODGM	--*-	ADP-L-glycero-D-manno-heptose-6-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf01395g03005.1	sp|Q6C9R9|SFH5_YARLI	*-*-	Phosphatidylinositol transfer protein SFH5	IPR001251 (CRAL-TRIO domain), IPR009038 (GOLD), IPR011074 (CRAL/TRIO, N-terminal domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf02069g02001.1	sp|B0G159|MCFC_DICDI	***-	Mitochondrial substrate carrier family protein C	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf01020g00024.1	sp|P27495|CB24_TOBAC	***-	Chlorophyll a-b binding protein 40, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf02990g03008.1			Unknown protein		
Niben101Scf00447g00004.1			Unknown protein		
Niben101Scf03284g06011.1	ref|XP_003593166.1|	*-*-	Helicase-like protein [Medicago truncatula]		
Niben101Scf16114g00002.1	gb|ACF19789.1|	*-**	NAC transcription factor [Nicotiana tabacum]	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07850g06002.1	sp|Q9SJF3|DCP1_ARATH	*-*-	mRNA-decapping enzyme-like protein	IPR010334 (Dcp1-like decapping), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf01721g01009.1	sp|O80560|IP5PC_ARATH	*-*-	Type I inositol 1,4,5-trisphosphate 5-phosphatase 12	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf00745g02013.1	AT2G25850.2	****	poly(A) polymerase 2 LENGTH=800	IPR002934 (Nucleotidyl transferase domain), IPR007012 (Poly(A) polymerase, central domain), IPR011068 (Nucleotidyltransferase, class I, C-terminal-like)	GO:0003723 (RNA binding), GO:0004652 (polynucleotide adenylyltransferase activity), GO:0005634 (nucleus), GO:0016779 (nucleotidyltransferase activity), GO:0031123 (RNA 3'-end processing), GO:0043631 (RNA polyadenylation)
Niben101Scf06291g01004.1	sp|Q9ZT87|PEL1_ARATH	***-	Protein PELOTA 1	IPR004405 (Translation release factor  pelota), IPR029064 (50S ribosomal protein L30e-like)	GO:0070481 (nuclear-transcribed mRNA catabolic process, non-stop decay), GO:0070966 (nuclear-transcribed mRNA catabolic process, no-go decay), GO:0071025 (RNA surveillance)
Niben101Scf01951g00025.1	AT5G59000.1	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=231	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf00149g10001.1	sp|Q9LMN6|WAK4_ARATH	*-**	Wall-associated receptor kinase 4	IPR000742 (Epidermal growth factor-like domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf18182g00001.1	emb|CDY00123.1|	***-	BnaC09g01780D [Brassica napus]	IPR007679 (Protein of unknown function DUF569), IPR008999 (Actin cross-linking)	
Niben101Scf07516g04001.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03906g02001.1	sp|Q5IBC5|ESP1_ARATH	*-*-	Separase	IPR005314 (Peptidase C50, separase)	GO:0005634 (nucleus), GO:0006508 (proteolysis), GO:0008233 (peptidase activity)
Niben101Scf01534g00004.1	gb|KEH43026.1|	***-	MtN26 [Medicago truncatula]		
Niben101Scf00854g11106.1			Unknown protein		
Niben101Scf01269g01013.1	AT4G16050.1	*-*-	Aminotransferase-like, plant mobile domain family protein LENGTH=666	IPR006904 (Protein of unknown function DUF716 (TMEM45)), IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf08128g00016.1	sp|Q9URU2|DNA2_SCHPO	*-**	DNA replication ATP-dependent helicase/nuclease dna2	IPR026851 (Dna2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0017108 (5'-flap endonuclease activity), GO:0033567 (DNA replication, Okazaki fragment processing), GO:0043142 (single-stranded DNA-dependent ATPase activity)
Niben101Scf03038g17004.1	sp|O81481|IF4E1_MAIZE	*-**	Eukaryotic translation initiation factor 4E-1	IPR001040 (Translation Initiation factor eIF- 4e), IPR023398 (Translation Initiation factor eIF- 4e-like  domain)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0006413 (translational initiation)
Niben101Scf00288g09011.1	ref|YP_009107602.1|	*-*-	NADH dehydrogenase subunit 2 (chloroplast) [Phalaenopsis hybrid cultivar] ref|YP_009107610.1| NADH dehydrogenase subunit 2 (chloroplast) [Phalaenopsis hybrid cultivar] gb|AIU44793.1| NADH dehydrogenase subunit 2 (chloroplast) [Phalaenopsis hybrid cultivar] gb|AIU44810.1| NADH dehydrogenase subunit 2 (chloroplast) [Phalaenopsis hybrid cultivar]		
Niben101Scf03973g01001.1	sp|Q48HZ1|ARNA_PSE14	***-	Bifunctional polymyxin resistance protein ArnA	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf01834g03004.1			Unknown protein		
Niben101Scf00362g00007.1	AT2G41690.1	****	heat shock transcription factor B3 LENGTH=244	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00981g03004.1	sp|O82067|TOM7A_SOLTU	****	Mitochondrial import receptor subunit TOM7-1	IPR012621 (Mitochondrial import receptor subunit TOM7)	GO:0005742 (mitochondrial outer membrane translocase complex), GO:0030150 (protein import into mitochondrial matrix)
Niben101Scf10015g03003.1	dbj|BAA21923.1|	--*-	ZPT2-14 [Petunia x hybrida]		
Niben101Scf02264g03012.1	emb|CDY51159.1|	***-	BnaA09g51940D [Brassica napus]	IPR022212 (Protein of unknown function DUF3741), IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf02798g00021.1			Unknown protein		
Niben101Scf09284g01004.1	sp|Q9FNX5|DRP1E_ARATH	***-	Dynamin-related protein 1E	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf03830g02011.1			Unknown protein		
Niben101Scf00154g05015.1			Unknown protein		
Niben101Scf03422g02008.1	sp|P58667|ISPG_CLOPE	*-**	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	IPR004588 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0005506 (iron ion binding), GO:0008299 (isoprenoid biosynthetic process), GO:0016114 (terpenoid biosynthetic process), GO:0046429 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03437g00005.1	gb|KEH39752.1|	****	transcriptional regulator of RNA polII, SAGA, subunit [Medicago truncatula]	IPR024738 (Transcriptional coactivator Hfi1/Transcriptional adapter 1)	GO:0070461 (SAGA-type complex)
Niben101Scf01785g08001.1	AT4G18210.1	***-	purine permease 10 LENGTH=390	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf11366g02020.1	sp|B3PDM1|ISPG_CELJU	*-**	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	IPR004588 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0005506 (iron ion binding), GO:0008299 (isoprenoid biosynthetic process), GO:0016114 (terpenoid biosynthetic process), GO:0046429 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf12094g00005.1	dbj|BAB39908.1|	--*-	P0028E10.12 [Oryza sativa Japonica Group]	IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf07073g03008.1	AT4G37900.1	*-*-	Protein of unknown function (duplicated DUF1399) LENGTH=787		
Niben101Scf01460g00009.1	sp|Q9LN71|RING1_ARATH	--*-	E3 ubiquitin-protein ligase	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00168g03011.1	sp|Q8VZC9|VPS25_ARATH	***-	Vacuolar protein sorting-associated protein 25	IPR008570 (ESCRT-II complex, vps25 subunit), IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf02828g03015.1	sp|Q91YR5|MET13_MOUSE	--**	Methyltransferase-like protein 13	IPR026635 (N-lysine methyltransferase See1-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02909g05008.1	sp|Q1C2C4|FADB_YERPA	--*-	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00479g03020.1	AT2G33845.1	***-	Nucleic acid-binding, OB-fold-like protein LENGTH=182	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf06743g00015.1	AT1G63470.1	*-**	AT hook motif DNA-binding family protein LENGTH=378	IPR005175 (Domain of unknown function DUF296), IPR020478 (AT hook-like)	GO:0003677 (DNA binding)
Niben101Ctg13152g00001.1	sp|Q9LVZ7|PDCT1_ARATH	***-	Phosphatidylcholine:diacylglycerol cholinephosphotransferase 1		
Niben101Scf00803g01016.1	gb|KEH31499.1|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf01824g00007.1	sp|P93788|REMO_SOLTU	*-*-	Remorin	IPR005516 (Remorin, C-terminal)	
Niben101Scf00430g01027.1	AT1G17350.2	*-*-	NADH:ubiquinone oxidoreductase intermediate-associated protein 30 LENGTH=236	IPR013857 (NADH:ubiquinone oxidoreductase intermediate-associated protein 30)	
Niben101Scf07563g01004.1	sp|Q9FGQ7|CCD32_ARATH	***-	Cyclin-D3-2	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf02864g04008.1	AT4G38970.1	****	fructose-bisphosphate aldolase 2 LENGTH=398	IPR000741 (Fructose-bisphosphate aldolase, class-I), IPR013785 (Aldolase-type TIM barrel), IPR029768 (Fructose-bisphosphate aldolase class-I active site)	GO:0003824 (catalytic activity), GO:0004332 (fructose-bisphosphate aldolase activity), GO:0006096 (glycolytic process)
Niben101Scf03827g01007.1	sp|Q6PDG5|SMRC2_MOUSE	--*-	SWI/SNF complex subunit SMARCC2		
Niben101Scf17797g00003.1	sp|P20238|MT1_ERYGU	*-*-	Metallothionein-like protein 1	IPR000347 (Metallothionein, family 15, plant)	GO:0046872 (metal ion binding)
Niben101Scf11774g01018.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf02497g01009.1	sp|Q98N47|RL14_RHILO	****	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf13816g00001.1	ref|XP_002530388.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF31994.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09458g00011.1	sp|O04609|WRK22_ARATH	****	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03046g04015.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05929g09010.1	AT1G04560.1	***-	AWPM-19-like family protein LENGTH=186	IPR008390 (AWPM-19-like)	
Niben101Ctg09403g00001.1			Unknown protein		
Niben101Scf06763g00018.1	emb|CCA25542.1|	*-*-	phosphatidylinositol kinase putative [Albugo laibachii Nc14]	IPR000270 (Phox/Bem1p), IPR009060 (UBA-like), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote)	GO:0005515 (protein binding)
Niben101Scf11813g01025.1			Unknown protein		
Niben101Scf05060g07008.1	ref|XP_002531850.1|	****	calcium ion binding protein, putative [Ricinus communis] gb|EEF30528.1| calcium ion binding protein, putative [Ricinus communis]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf06473g01014.1	sp|Q8L9K1|ERF99_ARATH	--**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02919g03014.1	AT3G17860.1	***-	jasmonate-zim-domain protein 3 LENGTH=352	IPR010399 (Tify), IPR018467 (CO/COL/TOC1, conserved site)	
Niben101Scf05732g04002.1	AT1G71240.1	***-	Plant protein of unknown function (DUF639) LENGTH=824	IPR006927 (Protein of unknown function DUF639)	
Niben101Scf04570g02014.1			Unknown protein		
Niben101Scf06112g02013.1	sp|P42774|GBF1_ARATH	****	G-box-binding factor 1	IPR004827 (Basic-leucine zipper domain), IPR012900 (G-box binding, MFMR)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00318g02012.1	AT3G08510.1	****	phospholipase C 2 LENGTH=581	IPR001192 (Phosphoinositide phospholipase C family), IPR011992 (EF-hand domain pair)	GO:0004435 (phosphatidylinositol phospholipase C activity), GO:0005515 (protein binding), GO:0006629 (lipid metabolic process), GO:0007165 (signal transduction), GO:0008081 (phosphoric diester hydrolase activity), GO:0035556 (intracellular signal transduction)
Niben101Scf04283g08012.1			Unknown protein		
Niben101Scf00919g07002.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01782g11026.1	sp|P0A4H0|SECY_SYNE7	***-	Protein translocase subunit SecY	IPR002208 (SecY/SEC61-alpha family), IPR023201 (SecY subunit domain)	GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf01371g03023.1	AT1G75160.1	***-	Protein of unknown function (DUF620) LENGTH=395	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf02573g02001.1	ref|XP_007047826.1|	***-	Folic acid and derivative biosynthetic process, putative [Theobroma cacao] gb|EOX91983.1| Folic acid and derivative biosynthetic process, putative [Theobroma cacao]	IPR005645 (Serine hydrolase FSH), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf09414g00008.1	sp|Q00958|LFY_ARATH	***-	Protein LEAFY	IPR002910 (Floricaula/leafy protein)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00747g11006.1	sp|Q9SHI7|UBC34_ARATH	*-*-	Ubiquitin-conjugating enzyme E2 34		
Niben101Scf07608g01021.1	sp|Q9JZ77|RIBB_NEIMB	****	3,4-dihydroxy-2-butanone 4-phosphate synthase	IPR000422 (3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB), IPR000926 (GTP cyclohydrolase II, RibA), IPR016299 (Riboflavin biosynthesis protein RibBA)	GO:0003935 (GTP cyclohydrolase II activity), GO:0008686 (3,4-dihydroxy-2-butanone-4-phosphate synthase activity), GO:0009231 (riboflavin biosynthetic process)
Niben101Scf02509g10011.1	sp|Q9SIV5|C3H19_ARATH	*-*-	Zinc finger CCCH domain-containing protein 19	IPR003121 (SWIB/MDM2 domain), IPR004343 (Plus-3)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006352 (DNA-templated transcription, initiation), GO:0016570 (histone modification)
Niben101Scf01569g03006.1	AT2G07820.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=88		
Niben101Scf06815g01013.1	ref|XP_002869709.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH45968.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf06091g00010.1	AT2G25110.1	***-	stromal cell-derived factor 2-like protein precursor LENGTH=218	IPR016093 (MIR motif), IPR027005 (Glycosyltransferase 39 like)	GO:0016020 (membrane)
Niben101Scf03206g00002.1	sp|Q9LYW0|Y5325_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	
Niben101Scf08443g00017.1	sp|Q94AS9|CNGC4_ARATH	*-*-	Cyclic nucleotide-gated ion channel 4	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf01072g03008.1	gb|ABD64919.1|	***-	Lil3 protein, putative [Brassica oleracea]	IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf20135g00001.1	ref|XP_007039411.1|	--*-	Zinc finger matrin-type protein 1, putative isoform 1 [Theobroma cacao] gb|EOY23912.1| Zinc finger matrin-type protein 1, putative isoform 1 [Theobroma cacao]		
Niben101Scf04523g00007.1	sp|Q8CT13|ODP2_STAES	***-	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	IPR015761 (Lipoamide Acyltransferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf10055g04004.1	gb|AAM65412.1|	*-*-	pectin acetylesterase [Arabidopsis thaliana]	IPR004963 (Protein notum homologue)	
Niben101Scf19307g00005.1	ref|XP_002324572.1|	*-*-	zinc finger family protein [Populus trichocarpa] gb|EEF03137.1| zinc finger family protein [Populus trichocarpa]		
Niben101Scf09698g01021.1	sp|P28178|PK2_DICDI	*-**	Protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00854g07042.1	AT2G07718.1	*-*-	Cytochrome b/b6 protein LENGTH=313	IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0016020 (membrane), GO:0022904 (respiratory electron transport chain)
Niben101Scf03435g02021.1	ref|XP_005708044.1|	*-**	transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Galdieria sulphuraria] gb|EME31524.1| transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Galdieria sulphuraria]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf05840g00006.1	gb|ADQ28399.1|	*-*-	transport membrane protein, partial (mitochondrion) [Butomus umbellatus]		
Niben101Scf01523g00020.1	AT2G27230.1	*-*-	transcription factor-related LENGTH=650	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf04382g03012.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR010543 (Domain of unknown function DUF1117), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00077g08017.1	AT3G26040.1	*-**	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf06441g01028.1	gb|KEH32721.1|	*-*-	esterase/lipase domain protein [Medicago truncatula]		
Niben101Scf04921g01001.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05801g00004.1	sp|Q10D38|MRS2I_ORYSJ	****	Magnesium transporter MRS2-I	IPR026573 (Magnesium transporter MRS2/LPE10)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport)
Niben101Scf01438g02001.1	sp|Q7JK24|B3GT1_GORGO	--**	Beta-1,3-galactosyltransferase 1	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf18106g01006.1	sp|A0RU86|PSB1_CENSY	****	Proteasome subunit beta 1	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf05411g00005.1	sp|Q3ZCG8|EMC6_BOVIN	-***	ER membrane protein complex subunit 6	IPR029008 (Rab5-interacting protein family)	GO:0005783 (endoplasmic reticulum), GO:0016021 (integral component of membrane), GO:0072546 (ER membrane protein complex)
Niben101Scf02463g01002.1	sp|Q8NCS7|CTL5_HUMAN	*-*-	Choline transporter-like protein 5	IPR007603 (Choline transporter-like)	
Niben101Scf02537g09004.1	AT1G22400.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Ctg11382g00003.1	emb|CDX69997.1|	--*-	BnaA10g23460D [Brassica napus]		
Niben101Scf08137g02021.1	sp|P49036|SUS2_MAIZE	*-**	Sucrose synthase 2	IPR000368 (Sucrose synthase)	GO:0005985 (sucrose metabolic process)
Niben101Scf02514g01005.1	AT3G48970.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=140	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf13694g00021.1	sp|Q9ZVC9|FRS3_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 3	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf00668g01003.1	AT2G04940.1	***-	scramblase-related LENGTH=392	IPR005552 (Scramblase)	
Niben101Scf04995g18001.1	AT5G65860.1	***-	ankyrin repeat family protein LENGTH=346	IPR020683 (Ankyrin repeat-containing domain), IPR026480 (Arginine N-methyltransferase 2-like domain), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005515 (protein binding)
Niben101Scf01825g04022.1	sp|Q8LAL0|SCO12_ARATH	***-	Protein SCO1 homolog 2, mitochondrial	IPR003782 (Copper chaperone SCO1/SenC), IPR012336 (Thioredoxin-like fold)	
Niben101Scf01487g02007.1	AT1G64030.1	***-	serpin 3 LENGTH=385	IPR000215 (Serpin family), IPR023795 (Serpin, conserved site), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf06249g00011.1	ref|NP_001061425.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAF23339.1| Os08g0272000, partial [Oryza sativa Japonica Group]		
Niben101Scf32746g00006.1	sp|A8ACD2|RL14_IGNH4	***-	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04071g03017.1	AT5G60900.1	*-**	receptor-like protein kinase 1 LENGTH=748	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07440g01009.1	sp|A9KGL7|UBIG_COXBN	--**	Ubiquinone biosynthesis O-methyltransferase	IPR022238 (Uncharacterised protein family, methyltransferase, Williams-Beuren syndrome), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf02054g03001.1	ref|WP_025944435.1|	*-*-	MULTISPECIES: TenA family transcriptional regulator [Prochlorococcus]	IPR016084 (Haem oxygenase-like, multi-helical), IPR023214 (HAD-like domain)	
Niben101Scf00369g02009.1	AT3G16510.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=360	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf06631g00013.1	sp|Q6TDP3|KLH17_MOUSE	*-*-	Kelch-like protein 17	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf06249g03002.1	sp|Q55087|CHLP_SYNY3	****	Geranylgeranyl diphosphate reductase	IPR003042 (Aromatic-ring hydroxylase-like), IPR016040 (NAD(P)-binding domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00875g06010.1	sp|Q9SSQ9|PLDA2_ARATH	*-*-	Phospholipase D alpha 2	IPR015679 (Phospholipase D family)	
Niben101Scf01917g07014.1	sp|Q2KJ44|PTPA_BOVIN	****	Serine/threonine-protein phosphatase 2A activator	IPR004327 (Phosphotyrosyl phosphatase activator, PTPA)	GO:0019211 (phosphatase activator activity)
Niben101Scf02486g06008.1	sp|Q9MTL1|YCF4_OENEH	****	Photosystem I assembly protein Ycf4	IPR003359 (Photosystem I Ycf4, assembly)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf06101g02004.1	ref|XP_002534404.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF27982.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01083g06006.1	ref|XP_007051635.1|	*-*-	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao] gb|EOX95792.1| Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao]		
Niben101Scf02474g01017.1	sp|Q9LU46|RH35_ARATH	*-*-	DEAD-box ATP-dependent RNA helicase 35		
Niben101Scf00799g05006.1	AT1G44110.1	****	Cyclin A1;1 LENGTH=460	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf01718g04004.1	ref|WP_026735795.1|	***-	molecular chaperone DnaJ [Fischerella sp. PCC 9605]	IPR021788 (Protein of unknown function DUF3353)	
Niben101Scf01063g04004.1	AT5G16890.1	***-	Exostosin family protein LENGTH=511	IPR004263 (Exostosin-like)	
Niben101Scf09994g00010.1	AT1G63100.1	*-*-	GRAS family transcription factor LENGTH=658	IPR005202 (Transcription factor GRAS), IPR030027 (Scarecrow-like protein 28)	
Niben101Scf00761g04010.1	sp|O48540|MAN1_SOLLC	***-	Mannan endo-1,4-beta-mannosidase 1	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01210g00003.1			Unknown protein		
Niben101Scf05203g10006.1			Unknown protein		
Niben101Scf07034g08027.1	emb|CDY29000.1|	--*-	BnaC07g32060D [Brassica napus]		
Niben101Ctg10401g00001.1			Unknown protein		
Niben101Scf07736g01006.1	sp|Q9ZQX4|VATF_ARATH	****	V-type proton ATPase subunit F	IPR008218 (ATPase, V1 complex, subunit F)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033180 (proton-transporting V-type ATPase, V1 domain), GO:0034220 (ion transmembrane transport), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf17834g00007.1	sp|O82352|RTNLE_ARATH	***-	Reticulon-like protein B5	IPR003388 (Reticulon)	
Niben101Scf09360g02006.1	sp|Q9XZE5|PP2AA_DICDI	***-	Serine/threonine-protein phosphatase 2A catalytic subunit A	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf34874g00011.1	sp|Q5SUF2|LC7L3_MOUSE	*-*-	Luc7-like protein 3	IPR004882 (Luc7-related)	GO:0003729 (mRNA binding), GO:0005685 (U1 snRNP), GO:0006376 (mRNA splice site selection)
Niben101Scf03785g00012.1	gb|EMT05005.1|	*-*-	Eukaryotic translation initiation factor 5B [Aegilops tauschii]		
Niben101Scf05820g00007.1	AT3G05960.1	****	sugar transporter 6 LENGTH=507	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf07778g01013.1	ref|XP_007035917.1|	*-*-	Calcium-dependent lipid-binding family protein isoform 4 [Theobroma cacao] gb|EOY06843.1| Calcium-dependent lipid-binding family protein isoform 4 [Theobroma cacao]	IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf01199g00001.1	emb|CDY63594.1|	*-*-	BnaUnng00820D [Brassica napus] emb|CDY19656.1| BnaC09g29120D [Brassica napus] emb|CDX95222.1| BnaC09g16480D [Brassica napus] emb|CDX71647.1| BnaC09g26880D [Brassica napus]		
Niben101Scf06504g00011.1	sp|O43719|HTSF1_HUMAN	*-*-	HIV Tat-specific factor 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07172g00003.1	AT1G51890.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=876	IPR024788 (Malectin-like carbohydrate-binding domain)	
Niben101Scf00081g00011.1	sp|Q54FU9|MCFW_DICDI	***-	Mitochondrial substrate carrier family protein W	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf02026g06001.1	AT3G61920.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, hypocotyl, root, egg cell; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=187	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf01574g02001.1	gb|KEH43276.1|	--*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf01383g03003.1	ref|YP_002608396.1|	***-	orf86 [Vitis vinifera] emb|CAQ77655.1| orf86 [Vitis vinifera] gb|ACS15212.1| ORF86 [Vitis vinifera]		
Niben101Scf08653g07033.1	sp|Q9GKX6|GALM_PIG	***-	Aldose 1-epimerase	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0019318 (hexose metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf02864g02009.1	sp|Q6NPL9|PLP3A_ARATH	*-*-	Thioredoxin domain-containing protein PLP3A		
Niben101Scf01750g15001.1	AT5G22220.2	****	E2F transcription factor 1 LENGTH=469	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR015633 (E2F Family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005667 (transcription factor complex), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg13882g00003.1	ref|XP_002515136.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF47120.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01433g08025.1	sp|C0SVM5|BBX19_ARATH	****	B-box zinc finger protein 19	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf09678g00006.1	sp|Q76LC6|RBM24_DANRE	*-**	RNA-binding protein 24	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01879g00006.1			Unknown protein		
Niben101Scf02929g04042.1	gb|ADL63828.1|	*-*-	ribosomal protein S3, partial (mitochondrion) [Degeneria roseiflora]		
Niben101Scf00988g06010.1	sp|Q6Z382|COPG2_ORYSJ	***-	Coatomer subunit gamma-2	IPR009028 (Coatomer/calthrin adaptor appendage, C-terminal subdomain), IPR013041 (Coatomer/clathrin adaptor appendage, Ig-like subdomain), IPR016024 (Armadillo-type fold), IPR017106 (Coatomer gamma subunit)	GO:0005198 (structural molecule activity), GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030126 (COPI vesicle coat)
Niben101Scf06410g01001.1	sp|Q56YN8|SMC3_ARATH	*-*-	Structural maintenance of chromosomes protein 3	IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029685 (Structural maintenance of chromosomes protein 3)	GO:0003682 (chromatin binding), GO:0006281 (DNA repair), GO:0007064 (mitotic sister chromatid cohesion), GO:0008280 (cohesin core heterodimer)
Niben101Scf06637g00018.1	sp|Q06R68|YCF2_JASNU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf06077g03014.1	sp|Q84W41|GLR36_ARATH	****	Glutamate receptor 3.6	IPR017103 (Ionotropic glutamate receptor, plant), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf00854g00028.1	ref|YP_006291827.1|	*-*-	orf43 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81181.1| orf43 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf08870g02001.1	AT5G41390.1	*-*-	PLAC8 family protein LENGTH=264		
Niben101Scf04185g00001.1	AT4G08250.1	***-	GRAS family transcription factor LENGTH=483	IPR005202 (Transcription factor GRAS), IPR030028 (Scarecrow-like protein 26/nodulation signalling pathway 2)	
Niben101Scf03326g03011.1	ref|XP_003610818.1|	-**-	Myb-like transcription factor [Medicago truncatula]		
Niben101Scf01800g02011.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf04220g00002.1	sp|Q8LC03|ATB13_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-13	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008289 (lipid binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01220g01015.1			Unknown protein		
Niben101Scf02175g06018.1	sp|O82345|BAG6_ARATH	*-**	BAG family molecular chaperone regulator 6	IPR000048 (IQ motif, EF-hand binding site), IPR003103 (BAG domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf01383g09021.1	sp|Q4I830|DRS1_GIBZE	--*-	ATP-dependent RNA helicase DRS1	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf05492g00002.1	gb|AES72719.2|	-**-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf01797g03001.1	sp|E1BNS0|FXL15_BOVIN	--*-	F-box/LRR-repeat protein 15	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf04113g01001.1	AT4G12570.1	*-**	ubiquitin protein ligase 5 LENGTH=873	IPR000569 (HECT)	GO:0004842 (ubiquitin-protein transferase activity)
Niben101Ctg07961g00001.1	sp|Q3EDF8|PPR28_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05419g01008.1	sp|Q9SUY0|FB244_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf01477g00023.1	ref|XP_002527227.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35153.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04386g03005.1	gb|AII64638.1|	***-	acetyl-CoA carboxylase [Bacteroides dorei]	IPR007934 (Alpha-L-arabinofuranosidase B, arabinose-binding domain), IPR012878 (Protein of unknown function DUF1680)	GO:0003824 (catalytic activity), GO:0046373 (L-arabinose metabolic process), GO:0046556 (alpha-L-arabinofuranosidase activity)
Niben101Scf01919g02001.1	sp|Q9Z269|VAPB_RAT	--**	Vesicle-associated membrane protein-associated protein B	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf04989g00006.1	sp|A3N2M5|KDSB2_ACTP2	****	3-deoxy-manno-octulosonate cytidylyltransferase 2	IPR003329 (Acylneuraminate cytidylyltransferase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005737 (cytoplasm), GO:0008690 (3-deoxy-manno-octulosonate cytidylyltransferase activity), GO:0009103 (lipopolysaccharide biosynthetic process)
Niben101Scf06361g01017.1	sp|Q9NQG5|RPR1B_HUMAN	*-*-	Regulation of nuclear pre-mRNA domain-containing protein 1B	IPR006569 (CID domain), IPR008942 (ENTH/VHS)	
Niben101Scf02182g19001.1	sp|Q4IQC1|PPME1_GIBZE	***-	Protein phosphatase methylesterase 1	IPR016812 (Protein phosphatase methylesterase, eukaryotic), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006482 (protein demethylation), GO:0052689 (carboxylic ester hydrolase activity)
Niben101Scf00393g03007.1	sp|Q8S8T8|PCR10_ARATH	***-	Protein PLANT CADMIUM RESISTANCE 10	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf01798g05009.1	sp|O65570|VILI4_ARATH	***-	Villin-4	IPR003128 (Villin headpiece), IPR007122 (Villin/Gelsolin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0007010 (cytoskeleton organization), GO:0051015 (actin filament binding), GO:0051017 (actin filament bundle assembly)
Niben101Scf05392g00006.1	emb|CDY60157.1|	***-	BnaAnng16530D [Brassica napus]		
Niben101Scf05087g05002.1	AT3G50430.1	***-	unknown protein; Has 54 Blast hits to 54 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=642	IPR024875 (Protein Lines), IPR029415 (Protein Lines, C-terminal)	
Niben101Scf05688g13001.1	AT5G47750.1	****	D6 protein kinase like 2 LENGTH=586	IPR011009 (Protein kinase-like domain), IPR011993 (Pleckstrin homology-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01382g02009.1	emb|CDY70109.1|	--*-	BnaCnng66740D [Brassica napus]		
Niben101Scf00929g03012.1	sp|P19254|GUB_BACCI	--*-	Beta-glucanase		
Niben101Scf07599g00019.1	AT1G62510.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=149	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf01062g03003.1	emb|CDX68674.1|	***-	BnaC01g07790D [Brassica napus]		
Niben101Scf05974g00006.1	emb|CDY50857.1|	*-*-	BnaA05g37180D [Brassica napus]		
Niben101Scf00765g00008.1	sp|P19532|TFE3_HUMAN	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00047g03022.1	gb|ABW97846.1|	***-	MYC [Nicotiana tabacum]		
Niben101Scf01911g02008.1			Unknown protein		
Niben101Scf04126g04002.1	AT3G25600.1	****	Calcium-binding EF-hand family protein LENGTH=161	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf29813g00001.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf13916g01001.1	sp|Q84N64|ARC5_ARATH	*-*-	Dynamin-like protein ARC5	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03735g01008.1	gb|ABB46936.1|	--*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf00635g04002.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01579g01032.1	sp|Q9FVI1|ADF2_PETHY	****	Actin-depolymerizing factor 2	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf07751g00003.1	AT5G49700.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=276	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf01219g03010.1	sp|P27061|PPA1_SOLLC	****	Acid phosphatase 1	IPR005519 (Acid phosphatase (Class B)), IPR023214 (HAD-like domain)	GO:0003993 (acid phosphatase activity)
Niben101Scf17244g00011.1	AT5G53750.1	*-*-	CBS domain-containing protein LENGTH=408		
Niben101Scf01328g02001.1	emb|CDO45715.1|	***-	Protein glycosylationmyb-like TTH transcriptional regulator, partial [Leucadendron olens]	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf06976g00016.1	sp|Q92564|DCNL4_HUMAN	***-	DCN1-like protein 4	IPR014764 (Defective-in-cullin neddylation protein)	
Niben101Scf00690g05001.1	ref|XP_007028894.1|	***-	Nucleolar protein gar2-related isoform 1 [Theobroma cacao] gb|EOY09396.1| Nucleolar protein gar2-related isoform 1 [Theobroma cacao]		
Niben101Scf01785g10011.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07191g00002.1	sp|Q9FEL7|LAX2_MEDTR	***-	Auxin transporter-like protein 2	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf00058g07005.1	sp|Q9LUV4|FRL4A_ARATH	***-	FRIGIDA-like protein 4a	IPR012474 (Frigida-like)	
Niben101Ctg14155g00001.1	sp|Q9LH73|GDL52_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01520g03002.1	sp|Q9FVN0|AMT13_SOLLC	****	Ammonium transporter 1 member 3	IPR001905 (Ammonium transporter), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf09321g01003.1	ref|XP_002509436.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF50823.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04233g00010.1			Unknown protein		
Niben101Scf04664g00021.1	AT2G21300.1	****	ATP binding microtubule motor family protein LENGTH=862	IPR001752 (Kinesin motor domain), IPR021881 (Protein of unknown function DUF3490), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf06862g01001.1	sp|Q8SQM0|RFC4_ENCCU	*-**	Replication factor C subunit 4	IPR012763 (DNA polymerase III, subunit gamma/ tau), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0005524 (ATP binding), GO:0006260 (DNA replication), GO:0009360 (DNA polymerase III complex)
Niben101Scf16592g00002.1			Unknown protein		
Niben101Scf06662g01007.1	sp|Q8N446|ZN843_HUMAN	--*-	Zinc finger protein 843	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf06275g02009.1	emb|CDY19013.1|	***-	BnaC01g20550D [Brassica napus]	IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf03138g01017.1	sp|P49215|RS17_SOLLC	***-	40S ribosomal protein S17	IPR001210 (Ribosomal protein S17e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01535g01003.1	sp|Q9FM65|FLA1_ARATH	*-*-	Fasciclin-like arabinogalactan protein 1	IPR000782 (FAS1 domain)	
Niben101Scf01413g05009.1	ref|XP_003593477.1|	***-	Lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf07785g00002.1	sp|Q99PP2|ZN318_MOUSE	--**	Zinc finger protein 318	IPR003604 (Zinc finger, U1-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf01859g03006.1	AT1G75150.1	*-*-	unknown protein; Has 38228 Blast hits to 24529 proteins in 1168 species: Archae - 169; Bacteria - 4103; Metazoa - 14594; Fungi - 5866; Plants - 1861; Viruses - 317; Other Eukaryotes - 11318 (source: NCBI BLink). LENGTH=784		
Niben101Scf05808g00012.1	gb|AAB01585.1|	*-*-	ORF-239; putative [Phaseolus vulgaris] gb|AAA32029.2| sterility protein 2 [Phaseolus vulgaris]		
Niben101Scf07152g04021.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf05710g03006.1	sp|Q9Y7K2|TOR2_SCHPO	*-*-	Phosphatidylinositol 3-kinase tor2	IPR016024 (Armadillo-type fold), IPR024585 (Domain of unknown function DUF3385,  target of rapamycin protein)	GO:0005488 (binding)
Niben101Scf27030g00007.1	sp|O42929|DENR_SCHPO	****	Translation machinery-associated protein 22	IPR005873 (Density-regulated protein DRP1)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf02665g04015.1	sp|P34114|PHS2_DICDI	****	Glycogen phosphorylase 2	IPR000811 (Glycosyl transferase, family 35)	GO:0004645 (phosphorylase activity), GO:0005975 (carbohydrate metabolic process), GO:0008184 (glycogen phosphorylase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf09368g02008.1			Unknown protein		
Niben101Scf10169g00006.1	gb|KEH39881.1|	*-*-	F-box/RNI/FBD-like domain protein [Medicago truncatula]		
Niben101Scf04995g17001.1	ref|XP_003636809.1|	****	Cytochrome B5 [Medicago truncatula] gb|KEH35789.1| cytochrome b5-like heme/steroid-binding domain protein [Medicago truncatula]	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf05440g02004.1	AT4G03420.1	***-	Protein of unknown function (DUF789) LENGTH=310	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf02862g00007.1	sp|Q9M0X5|CRK25_ARATH	*-**	Cysteine-rich receptor-like protein kinase 25	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09962g03004.1	AT3G45190.1	***-	SIT4 phosphatase-associated family protein LENGTH=789	IPR007587 (SIT4 phosphatase-associated protein family), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01964g01007.1	AT3G05840.2	****	Protein kinase superfamily protein LENGTH=409	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01406g02014.1	sp|Q9ZW33|TIM10_ARATH	****	Mitochondrial import inner membrane translocase subunit TIM10	IPR004217 (Tim10/DDP family zinc finger), IPR027247 (Mitochondrial import inner membrane translocase subunit Tim10/Tim12)	GO:0045039 (protein import into mitochondrial inner membrane)
Niben101Scf00884g00014.1	sp|Q9ZUL7|DEF01_ARATH	***-	Defensin-like protein 1	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf15907g00004.1	ref|XP_002529925.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF32479.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06276g00004.1	AT1G66340.1	****	Signal transduction histidine kinase, hybrid-type, ethylene sensor LENGTH=738	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01219g03011.1	sp|A9A5I5|RL14_NITMS	***-	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01718g06023.1	ref|XP_002521255.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF41111.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02816g12003.1	sp|Q1KXT4|CLPP_HELAN	*-*-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	
Niben101Scf01917g00010.1	sp|Q9XZE5|PP2AA_DICDI	***-	Serine/threonine-protein phosphatase 2A catalytic subunit A	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf05750g02001.1	sp|Q9LZC3|MASY_ARATH	****	Malate synthase	IPR001465 (Malate synthase), IPR011076 (Malate synthase-like)	GO:0003824 (catalytic activity), GO:0004474 (malate synthase activity), GO:0006097 (glyoxylate cycle)
Niben101Scf01985g03009.1	ref|XP_003623907.1|	*-*-	KDEL motif-containing protein [Medicago truncatula]	IPR006598 (Lipopolysaccharide-modifying protein)	
Niben101Scf20773g01025.1			Unknown protein		
Niben101Scf26981g00008.1	AT3G29180.1	***-	Protein of unknown function (DUF1336) LENGTH=513	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf03766g16004.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00442g09005.1	sp|Q9FZ95|PUP3_ARATH	***-	Purine permease 3	IPR000620 (EamA domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf07383g07006.1	emb|CDY19080.1|	***-	BnaA04g18200D [Brassica napus]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf04148g01037.1	AT5G50160.1	****	ferric reduction oxidase 8 LENGTH=728	IPR013121 (Ferric reductase, NAD binding), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01395g00019.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02468g11017.1	sp|P18870|JUN_CHICK	--*-	Transcription factor AP-1		
Niben101Scf02319g12004.1			Unknown protein		
Niben101Scf05688g13002.1	sp|A1JSF8|BIOH_YERE8	*-*-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04331g09018.1	AT4G24190.1	*-*-	Chaperone protein htpG family protein LENGTH=823	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf03031g02020.1	AT3G22540.1	***-	Protein of unknown function (DUF1677) LENGTH=110	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf02289g02010.1	sp|Q9CAA4|BIM2_ARATH	--*-	Transcription factor BIM2		
Niben101Scf03156g00009.1	sp|P46300|RS4_SOLTU	***-	40S ribosomal protein S4	IPR000876 (Ribosomal protein S4e)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf16234g01021.1	AT1G11925.1	***-	Stigma-specific Stig1 family protein LENGTH=140	IPR006969 (Stigma-specific protein Stig1)	
Niben101Scf03179g00009.1			Unknown protein		
Niben101Scf06388g02012.1	tpg|DAA47775.1|	--*-	TPA: hypothetical protein ZEAMMB73_248377 [Zea mays]		
Niben101Scf03365g05025.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf26890g00003.1	ref|NP_004308.2|	****	ATPase ASNA1 [Homo sapiens] ref|NP_001092334.1| ATPase ASNA1 [B product [Homo sapiens] tpg|DAA28025.1| TPA: arsA arsenite transporter, ATP-binding, homolog 1 [Bos taurus] gb|ADZ15365.1| arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) [synthetic construct] gb|EHH29684.1| ATPase ASNA1 [Macaca mulatta] gb|EHH59253.1| ATPase ASNA1 [Macaca fascicularis] gb|ELK06712.1| ATPase ASNA1 [Pteropus alecto] gb|ELR52911.1| ATPase ASNA1 [Bos mutus] gb|AHJ25817.1| arsa arsenite transporter ATP-binding [Panthera tigris altaica] gb|AIC48309.1| ASNA1, partial [synthetic construct]	IPR016300 (Arsenical pump ATPase, ArsA/GET3), IPR025723 (Anion-transporting ATPase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Ctg11118g00001.1	sp|Q9R6X4|ZDS_NOSS1	*-*-	Zeta-carotene desaturase		
Niben101Scf06077g02003.1	AT4G38250.1	***-	Transmembrane amino acid transporter family protein LENGTH=436	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf08926g08031.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf01826g02015.1	AT5G63280.1	*-*-	C2H2-like zinc finger protein LENGTH=271	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf38204g00001.1	sp|Q9AXH9|KAO1_HORVU	*-*-	Ent-kaurenoic acid oxidase 1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08918g03006.1	sp|Q9ZPE4|FBW2_ARATH	*-*-	F-box protein FBW2	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00315g03008.1	ref|NP_001065962.1|	***-	product [Oryza sativa Japonica Group]	IPR012908 (GPI inositol-deacylase PGAP1-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006505 (GPI anchor metabolic process), GO:0006886 (intracellular protein transport), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf10277g01007.1	sp|O82811|NRT21_ARATH	***-	High-affinity nitrate transporter 2.1	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03070g08002.1	ATMG00090.1	****	structural constituent of ribosome;protein binding chrM:25482-28733 REVERSE LENGTH=556	IPR000114 (Ribosomal protein L16), IPR001351 (Ribosomal protein S3, C-terminal), IPR016180 (Ribosomal protein L10e/L16)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf07590g03007.1	AT5G43100.1	***-	Eukaryotic aspartyl protease family protein LENGTH=631	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00584g03039.1	AT2G33420.1	***-	Protein of unknown function (DUF810) LENGTH=1039	IPR008528 (Protein of unknown function DUF810)	
Niben101Scf03105g00009.1	AT4G38070.1	*-*-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=1513		
Niben101Scf15187g04003.1	AT5G45110.1	*-*-	NPR1-like protein 3 LENGTH=586	IPR011333 (BTB/POZ fold), IPR020683 (Ankyrin repeat-containing domain), IPR021094 (NPR1/NIM1-like, C-terminal), IPR024228 (Domain of unknown function DUF3420)	GO:0005515 (protein binding)
Niben101Scf12847g00020.1	ref|XP_007035003.1|	--*-	N-carbamyl-L-amino acid amidohydrolase protein isoform 3 [Theobroma cacao] gb|EOY05929.1| N-carbamyl-L-amino acid amidohydrolase protein isoform 3 [Theobroma cacao]		
Niben101Scf02767g02012.1	sp|A4K2Q5|STK4_OTOGA	*-**	Serine/threonine-protein kinase 4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00240g00002.1	sp|Q8BH16|FBXL2_MOUSE	--*-	F-box/LRR-repeat protein 2		
Niben101Scf02601g07007.1	sp|Q8WXI4|ACO11_HUMAN	--*-	Acyl-coenzyme A thioesterase 11	IPR029069 (HotDog domain)	
Niben101Scf05396g03002.1	sp|O49508|FB237_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02280g01015.1	sp|Q9C912|R35A3_ARATH	***-	60S ribosomal protein L35a-3	IPR001780 (Ribosomal protein L35A), IPR009000 (Translation protein, beta-barrel domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04406g05012.1	AT3G24780.1	*-*-	Uncharacterised conserved protein UCP015417, vWA LENGTH=715	IPR024553 (Domain of unknown function DUF2828)	
Niben101Ctg05667g00001.1	sp|Q94JM3|ARFB_ARATH	*-*-	Auxin response factor 2		
Niben101Scf01070g04015.1			Unknown protein	IPR006706 (Extensin domain)	GO:0005199 (structural constituent of cell wall), GO:0009664 (plant-type cell wall organization)
Niben101Scf05820g00008.1	AT1G31670.1	****	Copper amine oxidase family protein LENGTH=741	IPR000269 (Copper amine oxidase)	GO:0005507 (copper ion binding), GO:0008131 (primary amine oxidase activity), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05821g02003.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01310g05006.1	ref|NP_001068343.1|	*-*-	product [Oryza sativa Japonica Group]	IPR007658 (Protein of unknown function DUF594)	
Niben101Scf05855g00002.1	sp|Q8L9K1|ERF99_ARATH	****	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00705g06012.1	gb|KEH16703.1|	*-*-	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf01169g00004.1	ref|XP_007047413.1|	***-	Maternal effect embryo arrest 59, putative isoform 1 [Theobroma cacao] gb|EOX91570.1| Maternal effect embryo arrest 59, putative isoform 1 [Theobroma cacao]		
Niben101Scf00451g03021.1	sp|Q9M081|SC24B_ARATH	****	Protein transport protein Sec24-like	IPR002035 (von Willebrand factor, type A), IPR006895 (Zinc finger, Sec23/Sec24-type), IPR006896 (Sec23/Sec24, trunk domain), IPR006900 (Sec23/Sec24, helical domain), IPR012990 (Sec23/Sec24 beta-sandwich), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0006886 (intracellular protein transport), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0008270 (zinc ion binding), GO:0030127 (COPII vesicle coat)
Niben101Scf04558g00001.1	sp|Q06J66|PSBC_BIGNA	*-**	Photosystem II CP43 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf07736g01007.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03027g01002.1	sp|Q9T0D6|PP306_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf14634g01019.1	sp|Q9M1E2|PTR37_ARATH	***-	Protein NRT1/ PTR FAMILY 2.7	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf27139g00010.1	sp|Q6NM73|CRR3_ARATH	***-	Cysteine-rich repeat secretory protein 3	IPR002902 (Gnk2-homologous domain)	
Niben101Scf00010g05015.1	sp|Q04634|EF1A_TETPY	*-*-	Elongation factor 1-alpha	IPR000795 (Elongation factor, GTP-binding domain), IPR001876 (Zinc finger, RanBP2-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0008270 (zinc ion binding)
Niben101Scf00280g02002.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY), IPR018872 (Zn-cluster domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01160g00007.1	sp|P27491|CB27_TOBAC	*-*-	Chlorophyll a-b binding protein 7, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf09083g00005.1	sp|Q7SXW3|LRC40_DANRE	*-*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf00448g01012.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00854g02021.1	sp|Q2VZE7|APAG_MAGSA	--*-	Protein ApaG		
Niben101Scf02744g01010.1	AT1G74940.1	***-	Protein of unknown function (DUF581) LENGTH=222	IPR007650 (Zf-FLZ domain)	
Niben101Scf01677g04002.1	ref|XP_002528523.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF33835.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08160g00002.1	AT2G42270.1	*-*-	U5 small nuclear ribonucleoprotein helicase LENGTH=2172	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf14041g01003.1	gb|AES89399.2|	--*-	pre-mRNA-processing protein 40C [Medicago truncatula]		
Niben101Scf02929g05109.1	sp|B1XUK1|NUOD_POLNS	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02133g04004.1	ref|XP_007042981.1|	***-	Dentin sialoph -related, putative isoform 5 [Theobroma cacao]		
Niben101Scf00192g01024.1	AT1G28510.1	***-	Optic atrophy 3 protein (OPA3) LENGTH=171	IPR010754 (Optic atrophy 3-like)	
Niben101Scf03507g01010.1	ref|WP_008236070.1|	****	Iron-sulfur cluster assembly protein SufB [Richelia intracellularis] emb|CCH68427.1| Iron-sulfur cluster assembly protein SufB [Richelia intracellularis HH01]	IPR000825 (SUF system FeS cluster assembly, SufBD)	GO:0016226 (iron-sulfur cluster assembly)
Niben101Scf00369g02008.1			Unknown protein		
Niben101Scf15671g01003.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03776g00003.1	sp|Q93VI3|RL171_ARATH	****	60S ribosomal protein L17-1	IPR001063 (Ribosomal protein L22/L17)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf13308g00003.1	sp|Q9M367|BECN1_ARATH	***-	Beclin-1-like protein	IPR007243 (Atg6/Beclin)	GO:0006914 (autophagy)
Niben101Scf15390g00011.1	AT1G47670.1	***-	Transmembrane amino acid transporter family protein LENGTH=519	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf06026g01003.1	sp|Q9ZUU0|WRK44_ARATH	*-**	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00428g17011.1	sp|Q7FNS9|NDHJ_ATRBE	*-*-	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic		
Niben101Scf07585g00042.1	sp|Q9LME6|MBD8_ARATH	*-**	Methyl-CpG-binding domain-containing protein 8	IPR015880 (Zinc finger, C2H2-like), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046872 (metal ion binding)
Niben101Scf04951g03004.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]		
Niben101Scf06236g01009.1	sp|C6DF65|AROA_PECCP	***-	3-phosphoshikimate 1-carboxyvinyltransferase	IPR013792 (RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta), IPR023193 (3-phosphoshikimate 1-carboxyvinyltransferase, conserved site)	GO:0003824 (catalytic activity), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf05749g01009.1			Unknown protein		
Niben101Scf04549g02011.1	sp|P40024|ARB1_YEAST	****	ABC transporter ATP-binding protein ARB1	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf03934g01021.1	sp|Q9FNC7|SUVR2_ARATH	****	Histone-lysine N-methyltransferase SUVR2	IPR018848 (WIYLD domain)	GO:0018024 (histone-lysine N-methyltransferase activity)
Niben101Scf00747g01027.1	emb|CDY01400.1|	***-	BnaA07g11730D [Brassica napus]	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf02562g00009.1	AT5G57940.1	****	cyclic nucleotide gated channel 5 LENGTH=717	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf11496g01001.1	sp|Q9SKI4|RFA1A_ARATH	--*-	Replication protein A 70 kDa DNA-binding subunit A	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf01970g08001.1	sp|Q5XIS9|KPCD2_RAT	*-**	Serine/threonine-protein kinase D2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01154g11015.1	AT3G50310.1	****	mitogen-activated protein kinase kinase kinase 20 LENGTH=342	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00788g03035.1	sp|Q9ZQ23|FLA3_ARATH	***-	Fasciclin-like arabinogalactan protein 3	IPR000782 (FAS1 domain)	
Niben101Scf02514g01004.1	gb|ABF93600.1|	****	heavy-metal-associated domain-containing protein, putative, expressed [Oryza sativa Japonica Group]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf09555g04002.1	sp|Q9FWX2|NAC7_ARATH	***-	NAC domain-containing protein 7	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05216g09018.1	gb|EMT02553.1|	--*-	LRR receptor-like serine/threonine-protein kinase FLS2 [Aegilops tauschii]		
Niben101Scf02073g04011.1	sp|Q39692|INV2_DAUCA	***-	Beta-fructofuranosidase, insoluble isoenzyme 2	IPR001362 (Glycoside hydrolase, family 32), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf13558g01019.1	emb|CDY47923.1|	***-	BnaAnng09550D [Brassica napus]		
Niben101Scf03939g05011.1			Unknown protein		
Niben101Scf00109g05011.1	AT4G14605.1	****	Mitochondrial transcription termination factor family protein LENGTH=493	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04479g00005.1	AT4G16760.1	****	acyl-CoA oxidase 1 LENGTH=664	IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR012258 (Acyl-CoA oxidase), IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal)	GO:0003995 (acyl-CoA dehydrogenase activity), GO:0003997 (acyl-CoA oxidase activity), GO:0005777 (peroxisome), GO:0006631 (fatty acid metabolic process), GO:0008152 (metabolic process), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01125g01003.1	sp|Q869Q3|NAPA_DICDI	*-*-	Nck-associated protein 1 homolog	IPR019137 (Nck-associated protein 1)	
Niben101Scf00749g03005.1	emb|CDY64575.1|	*-*-	BnaCnng44110D [Brassica napus]		
Niben101Scf00854g03017.1	ref|XP_002529236.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF33149.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02805g01007.1	AT2G25180.1	*-*-	response regulator 12 LENGTH=596	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf04973g00009.1	sp|Q2G5N5|ATPB_NOVAD	****	ATP synthase subunit beta	IPR005722 (ATPase, F1 complex, beta subunit), IPR020971 (ATP synthase, F1 beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000275 (mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)), GO:0005524 (ATP binding), GO:0006200 (ATP catabolic process), GO:0006754 (ATP biosynthetic process), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0015992 (proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0016887 (ATPase activity), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0046034 (ATP metabolic process), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Scf11922g00014.1	sp|Q9SL03|CALS2_ARATH	*-**	Callose synthase 2	IPR026953 (Callose synthase)	GO:0003843 (1,3-beta-D-glucan synthase activity)
Niben101Scf01808g01002.1	AT5G04330.1	*-*-	Cytochrome P450 superfamily protein LENGTH=512	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01454g03005.1	AT5G42630.1	***-	Homeodomain-like superfamily protein LENGTH=276	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01539g01009.1	gb|AET01484.2|	***-	Avr9/Cf-9 rapidly elicited protein [Medicago truncatula]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf04988g02018.1	AT5G52430.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=438		
Niben101Scf07724g00008.1	AT1G50920.1	****	Nucleolar GTP-binding protein LENGTH=671	IPR006073 (GTP binding domain), IPR010674 (Nucleolar GTP-binding protein 1, Rossman-fold domain), IPR011619 (Ferrous iron transport protein B, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0015093 (ferrous iron transmembrane transporter activity), GO:0015684 (ferrous iron transport), GO:0016021 (integral component of membrane)
Niben101Scf00854g07041.1	sp|O20644|CYB_FRAFR	*-*-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity)
Niben101Scf11646g03017.1	gb|AAO72706.1|	*-*-	heavy meromyosin-like protein [Oryza sativa Japonica Group]		
Niben101Scf00361g01007.1	sp|Q8S8V2|YCF2A_ATRBE	*-*-	Protein Ycf2 A		
Niben101Scf00863g08001.1	sp|P29162|ASOL_TOBAC	***-	L-ascorbate oxidase homolog	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01447g01010.1	sp|Q9LMP7|GOS11_ARATH	****	Golgi SNAP receptor complex member 1-1	IPR005639 (Delta endotoxin, N-terminal), IPR023601 (Golgi SNAP receptor complex, subunit 1)	GO:0000139 (Golgi membrane), GO:0005801 (cis-Golgi network), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0009405 (pathogenesis), GO:0016021 (integral component of membrane)
Niben101Scf01009g02001.1	emb|CDY52756.1|	***-	BnaA07g37710D [Brassica napus]		
Niben101Scf02062g04009.1	sp|Q9SIV5|C3H19_ARATH	****	Zinc finger CCCH domain-containing protein 19	IPR000571 (Zinc finger, CCCH-type), IPR003121 (SWIB/MDM2 domain), IPR003169 (GYF), IPR004343 (Plus-3), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006352 (DNA-templated transcription, initiation), GO:0008270 (zinc ion binding), GO:0016570 (histone modification), GO:0046872 (metal ion binding)
Niben101Scf00863g01025.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf18898g00009.1	sp|Q9LF66|Y5758_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf07895g06004.1	sp|P49637|R27A3_ARATH	***-	60S ribosomal protein L27a-3	IPR021131 (Ribosomal protein L18e/L15P)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06235g01001.1	sp|Q9SGS2|HMGB9_ARATH	***-	High mobility group B protein 9	IPR001606 (ARID DNA-binding domain), IPR009071 (High mobility group box domain)	GO:0003677 (DNA binding)
Niben101Scf11767g01011.1	sp|P27522|CB13_SOLLC	***-	Chlorophyll a-b binding protein 8, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf04686g02002.1	sp|Q9S7Y1|BH030_ARATH	*-*-	Transcription factor bHLH30	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04886g02001.1	sp|Q6AWW5|Y5262_ARATH	*-*-	Ankyrin repeat-containing protein	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00686g01005.1	AT5G11000.1	***-	Plant protein of unknown function (DUF868) LENGTH=389	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf08430g01003.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00854g11080.1			Unknown protein		
Niben101Scf01998g10004.1	sp|Q3EBF7|SLD2_ARATH	****	Delta(8)-fatty-acid desaturase 2	IPR012171 (Fatty acid/sphingolipid desaturase)	GO:0005506 (iron ion binding), GO:0006629 (lipid metabolic process), GO:0006633 (fatty acid biosynthetic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03098g00009.1	ref|XP_002511597.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF50266.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09184g02008.1			Unknown protein		
Niben101Scf04539g03005.1	sp|P49043|VPE_CITSI	***-	Vacuolar-processing enzyme	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05381g00001.1	sp|Q9LS90|LFR_ARATH	*-*-	Armadillo repeat-containing protein LFR	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf05923g05004.1	sp|Q8S3D2|BH087_ARATH	*-*-	Transcription factor bHLH87	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf06684g03003.1	sp|P19172|CHIA_ARATH	***-	Acidic endochitinase	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07589g02002.1	gb|AES90567.2|	***-	zein-binding protein [Medicago truncatula]	IPR007656 (Zein-binding domain)	
Niben101Scf00320g02024.1	sp|P79011|T2EB_SCHPO	****	Transcription initiation factor IIE subunit beta	IPR016656 (Transcription initiation factor TFIIE, beta subunit)	GO:0005673 (transcription factor TFIIE complex), GO:0006367 (transcription initiation from RNA polymerase II promoter)
Niben101Scf14769g01003.1	ref|XP_007030485.1|	****	Signal transduction histidine kinase isoform 1 [Theobroma cacao] gb|EOY10987.1| Signal transduction histidine kinase isoform 1 [Theobroma cacao]	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily), IPR029016 (GAF domain-like)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0007165 (signal transduction)
Niben101Scf02955g04001.1			Unknown protein		
Niben101Scf03488g02009.1	sp|Q94BZ5|HSFA5_ARATH	****	Heat stress transcription factor A-5	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02007g07005.1	AT1G27430.1	***-	GYF domain-containing protein LENGTH=1492	IPR003169 (GYF)	GO:0005515 (protein binding)
Niben101Scf03398g06006.1	ref|XP_007052616.1|	*-*-	Hydroxyproline-rich glycoprotein family protein, putative isoform 2 [Theobroma cacao] gb|EOX96773.1| Hydroxyproline-rich glycoprotein family protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf07054g02001.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05890g00007.1	sp|Q5BKM3|CHMP3_XENTR	***-	Charged multivesicular body protein 3	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf00960g01012.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09015g02007.1	ref|XP_002893920.1|	-**-	expressed protein [Arabidopsis lyrata subsp. lyrata] gb|EFH70179.1| expressed protein [Arabidopsis lyrata subsp. lyrata]		
Niben101Scf13250g02004.1	sp|Q59WH0|ADA2_CANAL	***-	Transcriptional adapter 2	IPR009057 (Homeodomain-like), IPR016827 (Transcriptional adaptor 2)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07250g01007.1	sp|P01122|RHO_APLCA	*-**	Ras-like GTP-binding protein RHO	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf05776g01050.1	sp|Q27RY7|YCF2_SOLTU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf21372g00001.1	sp|Q940P5|TET19_ARATH	***-	Tetraspanin-19	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf03804g01017.1	sp|Q9MBA1|CAO_ARATH	****	Chlorophyllide a oxygenase, chloroplastic	IPR013626 (Pheophorbide a oxygenase), IPR017941 (Rieske [2Fe-2S] iron-sulphur domain)	GO:0005506 (iron ion binding), GO:0010277 (chlorophyllide a oxygenase [overall] activity), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf38873g00002.1	sp|B8DN39|SURE_DESVM	*-*-	5'-nucleotidase SurE	IPR002828 (Survival protein SurE-like phosphatase/nucleotidase)	GO:0016787 (hydrolase activity)
Niben101Scf02639g03010.1			Unknown protein		
Niben101Scf25634g00012.1	AT3G50440.1	*-*-	methyl esterase 10 LENGTH=288	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03150g02010.1	sp|Q8YB50|FUMC_BRUME	*-*-	Fumarate hydratase class II	IPR000362 (Fumarate lyase family), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity)
Niben101Scf10235g00004.1	AT2G37740.1	*-*-	zinc-finger protein 10 LENGTH=304	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf08819g01016.1	sp|Q9SH66|DIR5_ARATH	*-*-	Dirigent protein 5		
Niben101Scf18157g00009.1	sp|Q9C9F5|C3H15_ARATH	***-	Zinc finger CCCH domain-containing protein 15	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf05678g02003.1	sp|Q746Y8|MTNA_GEOSL	*-*-	Methylthioribose-1-phosphate isomerase	IPR000649 (Initiation factor 2B-related)	GO:0044237 (cellular metabolic process)
Niben101Scf03574g00030.1			Unknown protein		
Niben101Scf00857g00005.1	AT5G07050.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=402	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf02996g00002.1	sp|Q6K609|GRXC3_ORYSJ	***-	Glutaredoxin-C3	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf05145g00004.1	sp|O48837|LRKS2_ARATH	--*-	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00525g01004.1	AT5G06470.1	*-*-	Glutaredoxin family protein LENGTH=239	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01422g00012.1	ref|XP_007041689.1|	*-*-	SAUR auxin-responsive family protein [Theobroma cacao] gb|EOX97520.1| SAUR auxin-responsive family protein [Theobroma cacao]		
Niben101Scf04388g02009.1	sp|Q66HD6|LRC18_RAT	***-	Leucine-rich repeat-containing protein 18	IPR025875 (Leucine rich repeat 4)	
Niben101Scf06109g00001.1	sp|O03376|AOX3_SOYBN	****	Alternative oxidase 3, mitochondrial	IPR002680 (Alternative oxidase)	GO:0009916 (alternative oxidase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05226g05003.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00173g09006.1	sp|Q06GQ3|ATPB_PIPCE	****	ATP synthase subunit beta, chloroplastic	IPR001469 (ATPase, F1 complex, delta/epsilon subunit), IPR005722 (ATPase, F1 complex, beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Ctg12235g00001.1	sp|Q86U38|NOP9_HUMAN	*-*-	Nucleolar protein 9	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf05809g00005.1	sp|P25765|CHI12_ORYSJ	****	Chitinase 12	IPR016283 (Glycoside hydrolase, family 19), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process), GO:0008061 (chitin binding), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Ctg01765g00001.1	AT5G23370.1	*-*-	GRAM domain-containing protein / ABA-responsive protein-related LENGTH=219	IPR004182 (GRAM domain)	
Niben101Scf18061g00003.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03255g03001.1	sp|Q9CSU0|RPR1B_MOUSE	*-*-	Regulation of nuclear pre-mRNA domain-containing protein 1B	IPR006569 (CID domain), IPR008942 (ENTH/VHS)	
Niben101Scf03203g08002.1	AT1G31490.1	****	HXXXD-type acyl-transferase family protein LENGTH=444	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03427g05012.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03877g00007.1	sp|Q42029|PSBP1_ARATH	--**	Oxygen-evolving enhancer protein 2-1, chloroplastic	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf06375g00021.1	sp|Q9FLG1|BXL4_ARATH	*-*-	Beta-D-xylosidase 4	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03377g05025.1	sp|P0A3D0|FER_SYNEL	***-	Ferredoxin-1	IPR010241 (Ferredoxin [2Fe-2S], plant), IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0022900 (electron transport chain), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf09442g00010.1	AT1G62940.1	***-	acyl-CoA synthetase 5 LENGTH=542	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00854g01002.1			Unknown protein		
Niben101Scf01142g03004.1	AT1G15760.1	***-	Sterile alpha motif (SAM) domain-containing protein LENGTH=202	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf04655g04022.1	AT5G42770.2	***-	Maf-like protein LENGTH=233	IPR029001 (Inosine triphosphate pyrophosphatase-like)	GO:0005737 (cytoplasm)
Niben101Scf00960g04009.1	sp|P14232|TGA1A_TOBAC	****	TGACG-sequence-specific DNA-binding protein TGA-1A	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02830g02031.1	sp|P17756|GAG_HV2D1	--*-	Gag polyprotein	IPR004332 (Transposase, MuDR, plant), IPR006564 (Zinc finger, PMZ-type), IPR018289 (MULE transposase domain)	GO:0008270 (zinc ion binding)
Niben101Scf07400g00013.1	sp|Q8VYI9|NLTL5_ARATH	--*-	Non-specific lipid-transfer protein-like protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00793g04011.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05417g02009.1	sp|Q0TN14|REX_CLOP1	--*-	Redox-sensing transcriptional repressor Rex		
Niben101Scf01881g02004.1			Unknown protein		
Niben101Scf01075g00020.1	gb|EWM23592.1|	*-*-	Protein of unknown function DUF2039 [Nannochloropsis gaditana]	IPR019351 (Protein of unknown function DUF2039)	
Niben101Scf00463g00019.1	AT1G60140.1	****	trehalose phosphate synthase LENGTH=861	IPR001830 (Glycosyl transferase, family 20), IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf07942g00014.1	gb|AES73591.2|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf02072g02005.1	sp|Q9LSW6|ACH10_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 10	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf13268g00002.1	sp|P40972|PLY_TOBAC	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf08072g00014.1	sp|B4TMG8|AES_SALSV	***-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf08039g01005.1	sp|Q08507|ACCO3_PETHY	***-	1-aminocyclopropane-1-carboxylate oxidase 3	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf04173g03012.1	emb|CBM56257.1|	****	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07214g00010.1	sp|O22944|NTAQ1_ARATH	***-	Protein N-terminal glutamine amidohydrolase	IPR023128 (Protein N-terminal glutamine amidohydrolase, alpha beta roll)	GO:0016811 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides)
Niben101Scf04309g02001.1	sp|P17772|OSS2_PEA	***-	Organ-specific protein S2	IPR024489 (Organ specific protein)	
Niben101Scf06771g00010.1	sp|Q96PM5|ZN363_HUMAN	*-**	RING finger and CHY zinc finger domain-containing protein 1	IPR004039 (Rubredoxin-type fold), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00592g04018.1	sp|Q6DJF8|MET23_XENLA	***-	Methyltransferase-like protein 23	IPR019410 (Nicotinamide N-methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf17872g00010.1	sp|Q39688|EP1G_DAUCA	--*-	Epidermis-specific secreted glycoprotein EP1		
Niben101Scf03643g02028.1	gb|AFO69204.1|	*-*-	ATPase subunit 8 (mitochondrion) [Gossypium hirsutum]		
Niben101Scf02750g03003.1	ref|XP_002419759.1|	****	transporter of the mitochondrial inner membrane, putative [Candida dubliniensis CD36] emb|CAX41974.1| transporter of the mitochondrial inner membrane, putative [Candida dubliniensis CD36]	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf01964g02003.1	sp|O73944|PCP_PYRFU	****	Pyrrolidone-carboxylate peptidase	IPR016125 (Peptidase C15, pyroglutamyl peptidase I-like)	GO:0005829 (cytosol), GO:0006508 (proteolysis), GO:0016920 (pyroglutamyl-peptidase activity)
Niben101Scf23078g00006.1	AT4G34200.1	****	D-3-phosphoglycerate dehydrogenase LENGTH=603	IPR006236 (D-3-phosphoglycerate dehydrogenase), IPR015878 (S-adenosyl-L-homocysteine hydrolase, NAD binding domain), IPR016040 (NAD(P)-binding domain), IPR029009 (Allosteric substrate binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1), IPR029753 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site)	GO:0004617 (phosphoglycerate dehydrogenase activity), GO:0006564 (L-serine biosynthetic process), GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03867g02038.1	AT5G45040.1	***-	Cytochrome c LENGTH=175	IPR009056 (Cytochrome c-like domain)	GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf08500g01018.1	gb|ABB47548.2|	***-	Colon cancer-associated protein Mic1-like containing protein, expressed [Oryza sativa Japonica Group]	IPR009755 (Colon cancer-associated Mic1-like)	
Niben101Scf05605g00044.1			Unknown protein		
Niben101Scf02530g01004.1	AT2G31490.1	***-	unknown protein; Has 55 Blast hits to 55 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=71		
Niben101Scf08508g01007.1	sp|O22131|LBD18_ARATH	*-*-	LOB domain-containing protein 18	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf11379g00017.1	ref|WP_031461198.1|	***-	lipase [Chloroflexus sp. MS-G]	IPR012908 (GPI inositol-deacylase PGAP1-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006505 (GPI anchor metabolic process), GO:0006886 (intracellular protein transport), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf13758g00011.1	sp|Q5RCG9|PFD3_PONAB	*-**	Prefoldin subunit 3	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex)
Niben101Scf00467g00016.1	sp|Q9CR16|PPID_MOUSE	****	Peptidyl-prolyl cis-trans isomerase D	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf02771g02005.1	sp|Q2TA44|RN148_BOVIN	*-*-	RING finger protein 148	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf12373g00005.1	sp|Q9FLC0|PER52_ARATH	****	Peroxidase 52	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00439g10050.1	sp|A4WE49|YGFZ_ENT38	***-	tRNA-modifying protein YgfZ	IPR006222 (Glycine cleavage T-protein-like, N-terminal), IPR013977 (Glycine cleavage T-protein, C-terminal barrel domain), IPR017703 (YgfZ/GcvT conserved site)	
Niben101Scf02190g04004.1	sp|O80560|IP5PC_ARATH	****	Type I inositol 1,4,5-trisphosphate 5-phosphatase 12	IPR000535 (MSP domain), IPR005135 (Endonuclease/exonuclease/phosphatase), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf09284g01003.1	sp|Q850K7|EXLB1_ORYSJ	***-	Expansin-like B1	IPR007117 (Expansin, cellulose-binding-like domain), IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf00854g00029.1			Unknown protein		
Niben101Scf01020g06004.1	sp|A4QJF8|YCF2_AETCO	*-*-	Protein Ycf2		
Niben101Scf05447g02007.1	sp|Q0CLJ6|DED1_ASPTN	*-**	ATP-dependent RNA helicase ded1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf03392g06004.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01795g02012.1	ref|XP_007030485.1|	****	Signal transduction histidine kinase isoform 1 [Theobroma cacao] gb|EOY10987.1| Signal transduction histidine kinase isoform 1 [Theobroma cacao]	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf05229g04024.1	sp|Q6FL81|RPE_CANGA	****	Ribulose-phosphate 3-epimerase	IPR000056 (Ribulose-phosphate 3-epimerase-like), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004750 (ribulose-phosphate 3-epimerase activity), GO:0005975 (carbohydrate metabolic process), GO:0006098 (pentose-phosphate shunt), GO:0008152 (metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives)
Niben101Ctg15598g00003.1	AT2G33570.1	***-	Domain of unknown function (DUF23) LENGTH=496	IPR008166 (Domain of unknown function DUF23)	
Niben101Scf05617g00005.1	AT3G53260.1	****	phenylalanine ammonia-lyase 2 LENGTH=717	IPR001106 (Aromatic amino acid lyase), IPR023144 (Phenylalanine ammonia-lyase, shielding domain), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0006559 (L-phenylalanine catabolic process), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf08566g02006.1	sp|Q9LME6|MBD8_ARATH	*-**	Methyl-CpG-binding domain-containing protein 8	IPR015880 (Zinc finger, C2H2-like), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046872 (metal ion binding)
Niben101Scf04574g01004.1	emb|CDY52515.1|	*-*-	BnaC03g61080D [Brassica napus]		
Niben101Scf29357g00003.1	sp|O22478|IMA_SOLLC	--*-	Importin subunit alpha	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf05519g02012.1	sp|Q9SUY0|FB244_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf02909g05007.1	sp|Q7MZ92|FADB_PHOLL	*-*-	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf07554g02008.1	sp|F4I096|MED13_ARATH	****	Mediator of RNA polymerase II transcription subunit 13	IPR009401 (Mediator complex, subunit Med13)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf08685g00020.1	sp|B1JB25|MUTS_PSEPW	*-**	DNA mismatch repair protein MutS	IPR000432 (DNA mismatch repair protein MutS, C-terminal), IPR007696 (DNA mismatch repair protein MutS, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf02929g04043.1	sp|Q2LCQ6|COX1_DICCI	*-**	Cytochrome c oxidase subunit 1+2	IPR001351 (Ribosomal protein S3, C-terminal), IPR008972 (Cupredoxin), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0005840 (ribosome), GO:0006412 (translation), GO:0016020 (membrane)
Niben101Scf02069g02002.1	emb|CDY11374.1|	*-*-	BnaA09g39400D [Brassica napus]	IPR021480 (Protein of unknown function DUF3133)	
Niben101Scf04003g10002.1			Unknown protein		
Niben101Scf00920g02006.1	emb|CDX85367.1|	*-*-	BnaC07g26780D [Brassica napus]		
Niben101Ctg13368g00004.1	AT3G59920.1	****	RAB GDP dissociation inhibitor 2 LENGTH=444	IPR018203 (GDP dissociation inhibitor)	GO:0005093 (Rab GDP-dissociation inhibitor activity), GO:0015031 (protein transport)
Niben101Scf01986g00022.1	sp|Q9JJA2|COG8_MOUSE	****	Conserved oligomeric Golgi complex subunit 8	IPR007255 (Conserved oligomeric Golgi complex subunit 8), IPR016159 (Cullin repeat-like-containing domain)	GO:0017119 (Golgi transport complex)
Niben101Scf07508g07007.1	AT3G21270.1	*-*-	DOF zinc finger protein 2 LENGTH=204	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf15823g00013.1	sp|Q99575|POP1_HUMAN	*-*-	Ribonucleases P/MRP protein subunit POP1	IPR009723 (Ribonuclease P/MRP, subunit POP1), IPR012590 (POPLD)	GO:0001682 (tRNA 5'-leader removal), GO:0004526 (ribonuclease P activity), GO:0006396 (RNA processing)
Niben101Scf39137g00006.1			Unknown protein		
Niben101Scf16044g01001.1	sp|Q9U9A3|PPP6_DICDI	*-*-	Serine/threonine-protein phosphatase 6 catalytic subunit	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf03392g11004.1	dbj|BAD94548.1|	--*-	pectinacetylesterase like protein [Arabidopsis thaliana]	IPR004963 (Protein notum homologue)	
Niben101Scf00245g05005.1	AT3G47550.3	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=288	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022143 (Protein of unknown function DUF3675)	GO:0008270 (zinc ion binding)
Niben101Scf01157g02001.1	ref|NP_001048635.1|	***-	product [Oryza sativa Japonica Group]	IPR008479 (Protein of unknown function DUF760)	
Niben101Scf01240g03014.1	sp|Q86JD4|SEC11_DICDI	****	Signal peptidase complex catalytic subunit sec11	IPR001733 (Peptidase S26B, eukaryotic signal peptidase), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016020 (membrane)
Niben101Scf01959g01001.1	ref|NP_001047761.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf12289g00001.1	ref|XP_002528841.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF33515.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01051g04005.1	AT4G16566.1	***-	histidine triad nucleotide-binding 4 LENGTH=146	IPR001310 (Histidine triad (HIT) protein), IPR011146 (HIT-like domain)	GO:0003824 (catalytic activity)
Niben101Scf07895g03004.1	sp|Q9FML2|HDA6_ARATH	*-*-	Histone deacetylase 6	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	
Niben101Ctg11552g00002.1	AT3G24880.1	*-*-	Helicase/SANT-associated, DNA binding protein LENGTH=1957		
Niben101Scf00288g09010.1	AT2G29970.1	***-	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein LENGTH=1002	IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf06596g01003.1	sp|A9B480|NUOD2_HERA2	*-**	NADH-quinone oxidoreductase subunit D 2	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00857g01002.1	sp|P26882|PPID_BOVIN	*-*-	Peptidyl-prolyl cis-trans isomerase D	IPR011990 (Tetratricopeptide-like helical domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0005515 (protein binding)
Niben101Scf06662g01008.1	ref|XP_003605324.1|	*-*-	Zinc finger protein [Medicago truncatula]	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Ctg14511g00002.1	ref|WP_017017400.1|	--*-	nucleoside hydrolase [Enterovibrio calviensis]	IPR001910 (Inosine/uridine-preferring nucleoside hydrolase domain), IPR023186 (Inosine/uridine-preferring nucleoside hydrolase)	
Niben101Scf08128g00015.1	sp|Q8QHA5|DNA2_XENLA	*-**	DNA replication ATP-dependent helicase/nuclease DNA2	IPR026851 (Dna2)	GO:0017108 (5'-flap endonuclease activity), GO:0033567 (DNA replication, Okazaki fragment processing), GO:0043142 (single-stranded DNA-dependent ATPase activity)
Niben101Scf04078g00002.1	AT1G73260.1	****	kunitz trypsin inhibitor 1 LENGTH=215	IPR002160 (Proteinase inhibitor I3, Kunitz legume)	GO:0004866 (endopeptidase inhibitor activity)
Niben101Scf03714g00001.1	sp|Q67ZB3|FRL3_ARATH	*-*-	FRIGIDA-like protein 3	IPR012474 (Frigida-like)	
Niben101Scf03830g02010.1	ref|XP_002518699.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF43624.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00154g05016.1	ref|XP_007026670.1|	*-*-	Transducin family protein / WD-40 repeat family protein, putative isoform 2 [Theobroma cacao] gb|EOY07172.1| Transducin family protein / WD-40 repeat family protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf05177g03023.1	AT5G23280.1	***-	TCP family transcription factor LENGTH=250	IPR005333 (Transcription factor, TCP)	
Niben101Scf01602g03005.1	sp|A2YGR5|SPL12_ORYSI	****	Squamosa promoter-binding-like protein 12	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf11601g00001.1	sp|B1YTK1|DNAJ_BURA4	--*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf07590g04001.1	sp|Q9FQ02|XRN2_ARATH	*-*-	5'-3' exoribonuclease 2	IPR004859 (Putative 5-3 exonuclease), IPR027073 (5'-3' exoribonuclease)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf05736g00001.1	AT5G47390.1	***-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05469g03009.1	AT5G05550.2	***-	sequence-specific DNA binding transcription factors LENGTH=249	IPR006578 (MADF domain)	
Niben101Scf00761g03004.1	sp|Q5XEZ8|PUB2_ARATH	*-*-	U-box domain-containing protein 2		
Niben101Scf02188g02007.1	sp|Q2RNG2|GLND_RHORT	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf02680g02019.1	sp|Q94KB9|MLO3_ARATH	*-*-	MLO-like protein 3	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf02243g01012.1	sp|E9PZM4|CHD2_MOUSE	*-**	Chromodomain-helicase-DNA-binding protein 2	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf09928g01020.1			Unknown protein		
Niben101Scf05490g00015.1	sp|P50346|RLA0_SOYBN	***-	60S acidic ribosomal protein P0	IPR001790 (Ribosomal protein L10/acidic P0), IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation), GO:0042254 (ribosome biogenesis)
Niben101Scf06761g01013.1	sp|Q0WKZ3|PP105_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf15072g00006.1	AT4G39860.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=299	IPR025131 (Domain of unknown function DUF4057)	
Niben101Scf08672g04006.1	sp|Q6G398|NUOK_BARHE	*-**	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf01947g00008.1	sp|Q69ZQ2|ISY1_MOUSE	***-	Pre-mRNA-splicing factor ISY1 homolog	IPR009360 (Isy1-like splicing)	
Niben101Scf00339g03014.1	AT1G59650.1	***-	Protein of unknown function (DUF1336) LENGTH=492	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf02348g05006.1			Unknown protein		
Niben101Scf07162g04014.1	sp|P71016|BETB_BACSU	****	Betaine aldehyde dehydrogenase	IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf01181g02002.1	sp|P93003|TFL1_ARATH	***-	Protein TERMINAL FLOWER 1	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf00156g03002.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07223g03004.1	AT3G09550.1	***-	Ankyrin repeat family protein LENGTH=607	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	GO:0005515 (protein binding)
Niben101Scf05060g07007.1	sp|Q9MAC5|PTBP1_ARATH	****	Polypyrimidine tract-binding protein homolog 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00113g04009.1	ref|XP_007044409.1|	*-*-	Galact isoform 1 [Theobroma cacao]		
Niben101Ctg04368g00002.1	sp|Q04500|UTP14_YEAST	*-**	U3 small nucleolar RNA-associated protein 14	IPR006709 (Small-subunit processome, Utp14)	GO:0006364 (rRNA processing), GO:0032040 (small-subunit processome)
Niben101Scf09458g00012.1	AT5G02820.1	****	Spo11/DNA topoisomerase VI, subunit A protein LENGTH=427	IPR002815 (Spo11/DNA topoisomerase VI subunit A), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000737 (DNA catabolic process, endonucleolytic), GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0006259 (DNA metabolic process)
Niben101Scf00471g00013.1	sp|P55993|RPOD_HELPY	*-**	RNA polymerase sigma factor RpoD	IPR014284 (RNA polymerase sigma-70 like domain), IPR016262 (RNA polymerase sigma factor, SigB/SigC/SigD, plastid)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Scf00811g04001.1	sp|B2RY50|ARMC4_MOUSE	*-*-	Armadillo repeat-containing protein 4	IPR004908 (ATPase, V1 complex, subunit H)	GO:0000221 (vacuolar proton-transporting V-type ATPase, V1 domain), GO:0005488 (binding), GO:0005515 (protein binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf03878g00003.1	sp|Q94C37|HDG2_ARATH	*-*-	Homeobox-leucine zipper protein HDG2		
Niben101Scf28507g00001.1	sp|Q8GZ17|COBL7_ARATH	*-*-	COBRA-like protein 7		
Niben101Scf09559g00005.1	sp|I1SSI5|MAX2A_PETHY	***-	F-box/LRR-repeat MAX2 homolog A	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf07231g01002.1	sp|Q9LZJ3|XXT1_ARATH	***-	Xyloglucan 6-xylosyltransferase 1	IPR008630 (Galactosyl transferase)	GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf08635g02001.1	sp|O49741|GATA2_ARATH	****	GATA transcription factor 2	IPR016679 (Transcription factor, GATA, plant)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding), GO:0045893 (positive regulation of transcription, DNA-templated)
Niben101Scf05367g01006.1	AT3G54350.1	***-	Forkhead-associated (FHA) domain-containing protein LENGTH=702	IPR008984 (SMAD/FHA domain), IPR025999 (Microspherule protein, N-terminal domain)	GO:0005515 (protein binding)
Niben101Scf00757g00007.1	AT3G29400.1	****	exocyst subunit exo70 family protein E1 LENGTH=658	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf01849g05011.1	AT1G55840.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=325	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf00380g02001.1	AT4G16146.1	***-	cAMP-regulated phosphoprotein 19-related protein LENGTH=102	IPR006760 (Endosulphine)	
Niben101Scf00854g11105.1			Unknown protein		
Niben101Scf02569g01019.1	AT1G02000.1	****	UDP-D-glucuronate 4-epimerase 2 LENGTH=434	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf03906g02002.1	sp|P33144|BIMB_EMENI	*-*-	Separin	IPR005314 (Peptidase C50, separase), IPR030397 (SEPARIN core domain)	GO:0005634 (nucleus), GO:0006508 (proteolysis), GO:0008233 (peptidase activity)
Niben101Scf01782g11025.1	tpg|DAA54610.1|	***-	TPA: hypothetical protein ZEAMMB73_096616 [Zea mays]		
Niben101Ctg16171g00004.1	emb|CDY22120.1|	***-	BnaC01g39810D [Brassica napus]	IPR022228 (Protein of unknown function DUF3755)	
Niben101Scf22285g00006.1	gb|KEH42391.1|	*-*-	SANTA (SANT associated) protein [Medicago truncatula]	IPR015216 (SANT associated)	
Niben101Scf07158g00025.1	sp|Q948U0|RBOHA_SOLTU	*-*-	Respiratory burst oxidase homolog protein A	IPR013121 (Ferric reductase, NAD binding), IPR013130 (Ferric reductase transmembrane component-like domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04180g01013.1	sp|Q9MA49|JAL2_ARATH	***-	Jacalin-related lectin 2	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf08443g00018.1	sp|Q9WV55|VAPA_MOUSE	--**	Vesicle-associated membrane protein-associated protein A	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf01750g15002.1	AT3G52500.1	***-	Eukaryotic aspartyl protease family protein LENGTH=469	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01834g03003.1			Unknown protein		
Niben101Scf03279g03024.1	AT5G47940.1	*-*-	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). LENGTH=749		
Niben101Ctg13600g00003.1	AT1G70570.2	*-*-	anthranilate phosphoribosyltransferase, putative LENGTH=632		
Niben101Scf13240g00001.1	dbj|BAO49707.1|	*-*-	nuclear pore complex protein Nup136c [Nicotiana benthamiana]		
Niben101Scf04481g00019.1	sp|Q9C811|NU160_ARATH	*-*-	Nuclear pore complex protein NUP160		
Niben101Scf19307g00004.1	ref|XP_002324572.1|	*-*-	zinc finger family protein [Populus trichocarpa] gb|EEF03137.1| zinc finger family protein [Populus trichocarpa]		
Niben101Scf04444g01004.1	sp|Q08069|RS8_MAIZE	***-	40S ribosomal protein S8	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09698g01022.1	ref|XP_002525724.1|	****	hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gb|EEF36707.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf10055g04005.1	AT4G19420.1	*-*-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf04523g00006.1	sp|A4W9T2|MDTK_ENT38	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03422g02007.1	sp|Q8S3D1|BH068_ARATH	*-*-	Transcription factor bHLH68	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02423g03020.1	AT4G12570.1	*-**	ubiquitin protein ligase 5 LENGTH=873	IPR000569 (HECT)	GO:0004842 (ubiquitin-protein transferase activity)
Niben101Scf09217g01009.1			Unknown protein		
Niben101Scf06541g00001.1	sp|Q42112|RLA02_ARATH	*-*-	60S acidic ribosomal protein P0-2	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf04899g01006.1	dbj|BAC57288.1|	*-*-	my [Oryza sativa Japonica Group]		
Niben101Scf06743g00014.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01550g00005.1	sp|Q6NJ91|NAGB_CORDI	****	Glucosamine-6-phosphate deaminase	IPR006148 (Glucosamine/galactosamine-6-phosphate isomerase)	GO:0005975 (carbohydrate metabolic process), GO:0006098 (pentose-phosphate shunt), GO:0017057 (6-phosphogluconolactonase activity)
Niben101Scf08841g00006.1	sp|Q9LPL5|ODBA1_ARATH	*-*-	2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial	IPR029061 (Thiamin diphosphate-binding fold)	
Niben101Scf02525g00007.1	sp|Q05A36|MEX3C_MOUSE	*-**	RNA-binding E3 ubiquitin-protein ligase MEX3C	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06441g01029.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04973g00007.1	gb|ACE79405.1|	*-*-	NBS-coding resistance gene analog [Nicotiana tabacum]		
Niben101Scf00338g09028.1	dbj|BAD90706.1|	--*-	plastid DNA-binding protein [Brassica napus]		
Niben101Scf04382g03011.1	sp|O42993|FKBP_SCHPO	***-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf00430g01026.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf20636g00005.1	ref|XP_007046458.1|	*-*-	Trigalactosyldiacylglycerol 1 isoform 5 [Theobroma cacao] gb|EOX90615.1| Trigalactosyldiacylglycerol 1 isoform 5 [Theobroma cacao]		
Niben101Scf00063g02003.1	emb|CDY16121.1|	*-*-	BnaC08g40020D [Brassica napus]	IPR008581 (Protein of unknown function DUF863, plant)	
Niben101Scf22940g00002.1	sp|O81829|GH35_ARATH	***-	Indole-3-acetic acid-amido synthetase GH3.5	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf01146g03010.1	sp|F4JP36|HAP2_ARATH	*-*-	Protein HAPLESS 2		
Niben101Scf02395g02002.1	sp|A5D2S3|TRUB_PELTS	*-**	tRNA pseudouridine synthase B	IPR002501 (Pseudouridine synthase II), IPR015947 (PUA-like domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf12094g00004.1	sp|A8H6X2|GRPE_SHEPA	--*-	Protein GrpE		
Niben101Scf10219g00010.1	AT1G06330.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=159	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf00318g03011.1	AT3G08510.1	****	phospholipase C 2 LENGTH=581	IPR001192 (Phosphoinositide phospholipase C family), IPR011992 (EF-hand domain pair)	GO:0004435 (phosphatidylinositol phospholipase C activity), GO:0005515 (protein binding), GO:0006629 (lipid metabolic process), GO:0007165 (signal transduction), GO:0008081 (phosphoric diester hydrolase activity), GO:0035556 (intracellular signal transduction)
Niben101Scf04117g07001.1	sp|Q4KM34|CDK20_RAT	****	Cyclin-dependent kinase 20	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02864g04007.1	gb|KFB86043.1|	***-	molecular chaperone DnaJ [Calothrix sp. 336/3]	IPR021788 (Protein of unknown function DUF3353)	
Niben101Scf11384g00024.1	AT3G51870.1	***-	Mitochondrial substrate carrier family protein LENGTH=381	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf03600g02026.1	sp|Q9FQ20|SCC12_ARATH	*-*-	Sister chromatid cohesion 1 protein 2	IPR023093 (Rad21/Rec8-like protein, C-terminal)	GO:0000228 (nuclear chromosome)
Niben101Scf13694g00020.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00944g00005.1	sp|O80722|PME4_ARATH	*-**	Pectinesterase 4	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf08001g00002.1	sp|Q42430|ZFP1_WHEAT	***-	Zinc finger protein 1	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf32746g00007.1	emb|CDY13133.1|	***-	BnaA09g16840D [Brassica napus]		
Niben101Scf09509g00010.1	sp|B8E3Q5|SYGB_SHEB2	--*-	Glycine--tRNA ligase beta subunit		
Niben101Scf06499g01019.1	sp|Q9C8K7|FBK21_ARATH	***-	F-box/kelch-repeat protein	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Ctg12372g00001.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00436g00003.1	sp|Q4QSC8|SGO1_MAIZE	*-*-	Shugoshin-1	IPR011515 (Shugoshin, C-terminal)	GO:0000775 (chromosome, centromeric region), GO:0005634 (nucleus), GO:0045132 (meiotic chromosome segregation)
Niben101Scf00875g06011.1			Unknown protein		
Niben101Scf01917g07015.1	sp|Q5BU09|EAPP_MOUSE	*-*-	E2F-associated phosphoprotein	IPR019370 (E2F-associated phosphoprotein)	
Niben101Scf06631g00012.1	sp|Q96PQ7|KLHL5_HUMAN	*-*-	Kelch-like protein 5	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf00338g03002.1	sp|Q9SW33|TL1Y_ARATH	***-	Thylakoid lumenal 17.9 kDa protein, chloroplastic		
Niben101Scf04099g12002.1	AT5G24410.1	*-*-	6-phosphogluconolactonase 4 LENGTH=261	IPR006148 (Glucosamine/galactosamine-6-phosphate isomerase)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf04782g01001.1	sp|O22193|PUB4_ARATH	***-	U-box domain-containing protein 4	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf07607g00001.1	sp|Q2NQH6|BIOH_SODGM	***-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf14542g00034.1	sp|Q3J8A0|GPH_NITOC	*-*-	Phosphoglycolate phosphatase	IPR006439 (HAD hydrolase, subfamily IA), IPR009721 (O-acyltransferase, WSD1, C-terminal), IPR023214 (HAD-like domain)	GO:0004144 (diacylglycerol O-acyltransferase activity), GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf03045g00002.1	emb|CDY25789.1|	*-*-	BnaA07g09930D [Brassica napus]		
Niben101Scf00338g04003.1	AT3G48660.1	***-	Protein of unknown function (DUF 3339) LENGTH=89	IPR021775 (Protein of unknown function DUF3339)	
Niben101Scf01718g04003.1	AT1G21740.1	*-*-	Protein of unknown function (DUF630 and DUF632) LENGTH=953	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf02821g04003.1	sp|Q609G2|UBIG_METCA	*-**	Ubiquinone biosynthesis O-methyltransferase	IPR025774 (Tocopherol O-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf03494g00002.1			Unknown protein		
Niben101Scf03785g00011.1	AT2G03390.1	***-	uvrB/uvrC motif-containing protein LENGTH=330	IPR001943 (UVR domain), IPR011722 (Hemimethylated DNA-binding domain)	GO:0003677 (DNA binding), GO:0005515 (protein binding)
Niben101Scf00481g05001.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07984g01003.1	sp|Q8L783|CAX5_ARATH	****	Vacuolar cation/proton exchanger 5	IPR004798 (Calcium/proton exchanger CAX)	GO:0006816 (calcium ion transport), GO:0015369 (calcium:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf06326g00006.1	sp|Q38924|PPA12_ARATH	*-*-	Fe(3+)-Zn(2+) purple acid phosphatase 12	IPR029052 (Metallo-dependent phosphatase-like)	
Niben101Scf11496g01002.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf09360g02007.1	sp|Q6NUT3|MFS12_HUMAN	***-	Major facilitator superfamily domain-containing protein 12	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf02541g01001.1	AT2G20430.1	*-*-	ROP-interactive CRIB motif-containing protein 6 LENGTH=212	IPR000095 (CRIB domain)	
Niben101Scf07215g00007.1	sp|Q0WPQ2|ETR2_ARATH	****	Ethylene receptor 2	IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily), IPR014525 (Signal transduction histidine kinase, hybrid-type, ethylene sensor), IPR029016 (GAF domain-like)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004673 (protein histidine kinase activity), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0005789 (endoplasmic reticulum membrane), GO:0007165 (signal transduction), GO:0009873 (ethylene-activated signaling pathway), GO:0016020 (membrane)
Niben101Scf01520g03003.1	gb|AGW82777.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia mexicana]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf04301g02007.1	AT1G02205.3	****	Fatty acid hydroxylase superfamily LENGTH=630	IPR006694 (Fatty acid hydroxylase), IPR021940 (Uncharacterised domain Wax2, C-terminal)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03489g00004.1	sp|Q9LZQ1|TBL6_ARATH	*-*-	Protein trichome birefringence-like 6	IPR026057 (PC-Esterase)	
Niben101Scf05713g01001.1	sp|P46300|RS4_SOLTU	***-	40S ribosomal protein S4	IPR000876 (Ribosomal protein S4e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01481g02020.1			Unknown protein		
Niben101Ctg16161g00004.1	AT2G37020.2	*-*-	Translin family protein LENGTH=310	IPR002848 (Translin)	GO:0043565 (sequence-specific DNA binding)
Niben101Scf06275g02008.1			Unknown protein		
Niben101Scf02581g01003.1	sp|Q54RB9|CMC_DICDI	*-**	Calcium-binding mitochondrial carrier protein	IPR002067 (Mitochondrial carrier protein), IPR011992 (EF-hand domain pair), IPR023395 (Mitochondrial carrier domain)	GO:0005509 (calcium ion binding), GO:0055085 (transmembrane transport)
Niben101Scf08653g07032.1	sp|Q9UBV2|SE1L1_HUMAN	***-	Protein sel-1 homolog 1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04096g06005.1	AT1G46264.1	****	heat shock transcription factor B4 LENGTH=348	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04233g00011.1	sp|Q6GHJ6|RIMM_STAAR	*-**	Ribosome maturation factor RimM	IPR009000 (Translation protein, beta-barrel domain), IPR011033 (PRC-barrel-like), IPR011961 (16S rRNA processing protein RimM), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005840 (ribosome), GO:0006364 (rRNA processing), GO:0043022 (ribosome binding)
Niben101Scf07639g00001.1	pdb|4BM5|A	*-*-	Chain A, Chloroplast Inner Membrane Protein Tic110		
Niben101Scf05506g03005.1	sp|O43304|S14L5_HUMAN	*-*-	SEC14-like protein 5	IPR001251 (CRAL-TRIO domain)	
Niben101Scf05801g00005.1	AT2G30570.1	****	photosystem II reaction center W LENGTH=133	IPR009806 (Photosystem II PsbW, class 2)	GO:0009507 (chloroplast), GO:0009523 (photosystem II), GO:0015979 (photosynthesis)
Niben101Scf00758g04002.1			Unknown protein		
Niben101Scf06637g00019.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf02566g03002.1	AT5G25840.1	***-	Protein of unknown function (DUF1677) LENGTH=173	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf03164g04014.1	sp|P01122|RHO_APLCA	****	Ras-like GTP-binding protein RHO	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf01922g08010.1	gb|AAO72706.1|	*-*-	heavy meromyosin-like protein [Oryza sativa Japonica Group]		
Niben101Scf04133g02001.1	sp|A6MMT5|RPOC1_ILLOL	*-**	DNA-directed RNA polymerase subunit beta'	IPR006592 (RNA polymerase, N-terminal), IPR007080 (RNA polymerase Rpb1, domain 1)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf01771g01021.1	sp|Q8L7W2|NUDT8_ARATH	****	Nudix hydrolase 8	IPR003293 (Nudix hydrolase 6-like)	GO:0016787 (hydrolase activity)
Niben101Scf08134g01005.1	sp|Q2KNL5|CADH1_OCIBA	***-	Cinnamyl alcohol dehydrogenase 1	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08918g03008.1	gb|ACG31703.1|	--*-	ubiquitin-protein ligase [Zea mays]		
Niben101Scf08272g00022.1	sp|Q9SHI7|UBC34_ARATH	--*-	Ubiquitin-conjugating enzyme E2 34		
Niben101Scf08137g02022.1	sp|Q7XSA2|AGO1B_ORYSJ	***-	Protein argonaute 1B	IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785), IPR024357 (Argonaut, glycine-rich domain)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf06649g01003.1	ref|XP_003600004.1|	*-*-	Cohesin subunit SA-1 [Medicago truncatula] gb|AES70255.1| sister-chromatide cohesion protein, putative [Medicago truncatula]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01486g03005.1	sp|Q9A1Q2|VATB_STRP1	****	V-type ATP synthase beta chain	IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR022879 (V-type ATP synthase regulatory subunit B/beta), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0015992 (proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0033180 (proton-transporting V-type ATPase, V1 domain), GO:0046034 (ATP metabolic process)
Niben101Scf01220g01014.1	sp|Q8BUH1|TXN4B_MOUSE	***-	Thioredoxin-like protein 4B	IPR004123 (mRNA splicing factor, thioredoxin-like U5 snRNP), IPR012336 (Thioredoxin-like fold)	GO:0005681 (spliceosomal complex), GO:0007067 (mitotic nuclear division)
Niben101Scf04148g01035.1	AT3G48240.1	***-	Octicosapeptide/Phox/Bem1p family protein LENGTH=180	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf00063g11003.1	AT3G21270.1	*-*-	DOF zinc finger protein 2 LENGTH=204	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07030g05008.1	sp|Q5AZJ7|DPH1_EMENI	****	Diphthamide biosynthesis protein 1	IPR002728 (Diphthamide synthesis, DPH1/DPH2)	GO:0005737 (cytoplasm), GO:0017183 (peptidyl-diphthamide biosynthetic process from peptidyl-histidine)
Niben101Scf13259g00001.1	gb|ABA91045.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf02279g05007.1	sp|Q9FPS9|UBP15_ARATH	*-*-	Ubiquitin carboxyl-terminal hydrolase 15		
Niben101Scf05392g00005.1	emb|CDY60157.1|	*-*-	BnaAnng16530D [Brassica napus]		
Niben101Scf01623g08006.1	gb|ABF94719.1|	--*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf06155g01006.1	ref|XP_007034967.1|	--*-	Ankyrin repeat family protein, putative [Theobroma cacao] gb|EOY05893.1| Ankyrin repeat family protein, putative [Theobroma cacao]		
Niben101Scf02182g19002.1	sp|P00052|CYC_VIGRR	***-	Cytochrome c	IPR002327 (Cytochrome c, class IA/ IB), IPR009056 (Cytochrome c-like domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf04608g02012.1	sp|Q9M907|PP217_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03264g00004.1	sp|Q0T0L8|ZUPT_SHIF8	--*-	Zinc transporter ZupT		
Niben101Scf01951g00026.1	sp|Q9ZW33|TIM10_ARATH	****	Mitochondrial import inner membrane translocase subunit TIM10	IPR004217 (Tim10/DDP family zinc finger), IPR027247 (Mitochondrial import inner membrane translocase subunit Tim10/Tim12)	GO:0045039 (protein import into mitochondrial inner membrane)
Niben101Scf06249g03001.1	sp|Q9CA68|GDL31_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02486g06007.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01028g01007.1	sp|Q9SAC4|FB2_ARATH	--*-	F-box protein	IPR001611 (Leucine-rich repeat), IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01063g04003.1	sp|P0CR79|HSE1_CRYNB	*-*-	Class E vacuolar protein-sorting machinery protein HSE1	IPR008942 (ENTH/VHS), IPR014645 (Target of Myb protein 1)	GO:0005622 (intracellular), GO:0006886 (intracellular protein transport)
Niben101Scf04582g03009.1	sp|Q9S728|PDF1_ARATH	--*-	Protodermal factor 1		
Niben101Scf00761g04011.1	sp|Q9SD34|C3H44_ARATH	*-*-	Zinc finger CCCH domain-containing protein 44	IPR003121 (SWIB/MDM2 domain)	GO:0005515 (protein binding)
Niben101Scf17244g00010.1	sp|Q9ZPH4|DES1L_ARATH	*-*-	Sphingolipid delta(4)-desaturase DES1-like	IPR013866 (Sphingolipid delta4-desaturase, N-terminal)	
Niben101Scf03284g06012.1	gb|AAK13103.1|AC078839_19	*-*-	Helicase-like protein [Oryza sativa Japonica Group]	IPR025476 (Helitron helicase-like domain)	
Niben101Scf01563g02007.1	gb|ABD28646.1|	***-	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf08742g00001.1	gb|AAY85179.1|	***-	fiber expressed protein [Gossypium hirsutum]	IPR008480 (Protein of unknown function DUF761, plant), IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf00630g03001.1	gb|AET01733.2|	***-	tRNA-splicing endonuclease positive effector-like protein [Medicago truncatula]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf06662g02024.1	ref|XP_007039811.1|	*-*-	G2484-1 protein, putative isoform 4 [Theobroma cacao] gb|EOY24312.1| G2484-1 protein, putative isoform 4 [Theobroma cacao]	IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf03143g11021.1	sp|Q9SNB4|PCL1_ARATH	*-*-	Transcription factor LUX	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf01785g10012.1	sp|Q9ASX9|BH144_ARATH	***-	Transcription factor bHLH144	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf08753g00006.1	emb|CDY22129.1|	*-*-	BnaC01g39720D [Brassica napus]		
Niben101Scf08998g02002.1	emb|CDY40766.1|	*-*-	BnaAnng06290D [Brassica napus]		
Niben101Scf00850g00005.1	AT1G14060.1	*-*-	GCK domain-containing protein LENGTH=179	IPR012891 (GCK)	
Niben101Scf01413g05008.1	sp|Q7F613|SCAM2_ORYSJ	****	Secretory carrier-associated membrane protein 2	IPR007273 (SCAMP)	GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf03138g01018.1	gb|AAT77883.1|	***-	expressed protein [Oryza sativa Japonica Group] gb|ABF98697.1| expressed protein [Oryza sativa Japonica Group] gb|EAZ28473.1| hypothetical protein OsJ_12454 [Oryza sativa Japonica Group]	IPR008796 (Photosystem I PsaN, reaction centre subunit N)	GO:0005516 (calmodulin binding), GO:0009522 (photosystem I), GO:0015979 (photosynthesis), GO:0042651 (thylakoid membrane)
Niben101Scf05948g03017.1	AT2G26150.1	*-**	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05808g00010.1			Unknown protein		
Niben101Scf04766g00001.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06529g06014.1	sp|P49842|STK19_HUMAN	--*-	Serine/threonine-protein kinase 19	IPR018865 (Serine-threonine protein kinase 19)	
Niben101Scf05710g03007.1	AT1G16630.1	*-*-	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=845		
Niben101Scf07152g04020.1	ref|XP_002533660.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF28719.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf39554g00002.1	gb|AIW66447.1|	***-	11S seed storage protein [Oryza rufipogon]	IPR006044 (11-S seed storage protein, plant)	GO:0045735 (nutrient reservoir activity)
Niben101Scf00712g09031.1	sp|Q5M7D4|CNPY1_XENLA	*-*-	Protein canopy homolog 1	IPR021852 (Domain of unknown function DUF3456)	
Niben101Scf12686g02007.1	ref|NP_179175.3|	***-	P-loop containing nucle [Arabidopsis thaliana]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf04406g05011.1	AT5G43400.1	*-*-	Uncharacterised conserved protein UCP015417, vWA LENGTH=655	IPR024553 (Domain of unknown function DUF2828)	
Niben101Scf09808g00002.1	sp|P10538|AMYB_SOYBN	*-**	Beta-amylase	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf03138g01019.1	sp|Q9D7S9|CHMP5_MOUSE	***-	Charged multivesicular body protein 5	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf01535g01005.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf03670g04020.1	sp|B1ZMG6|FTSH_OPITP	*-**	ATP-dependent zinc metalloprotease FtsH	IPR001487 (Bromodomain), IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf00240g00001.1	sp|Q9C5D2|FBL4_ARATH	--*-	F-box/LRR-repeat protein 4	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf11952g00008.1	tpg|DAA47775.1|	-**-	TPA: hypothetical protein ZEAMMB73_248377 [Zea mays]		
Niben101Scf02085g26009.1	sp|Q9LZX1|LOR15_ARATH	***-	Protein LURP-one-related 15	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf09368g02009.1	sp|Q75QI0|CFDP1_CHICK	*-*-	Craniofacial development protein 1	IPR011421 (BCNT-C domain), IPR027124 (SWR1-complex protein 5/Craniofacial development protein)	
Niben101Scf06986g02010.1	sp|Q3C1P7|RR15_NICSY	*-*-	30S ribosomal protein S15, chloroplastic	IPR000589 (Ribosomal protein S15)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01593g05013.1	sp|P26300|ENO_SOLLC	--*-	Enolase		
Niben101Scf03027g01001.1	sp|Q8KZP5|MHPC_COMTE	*-*-	2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf10063g00003.1	AT1G58290.1	*-**	Glutamyl-tRNA reductase family protein LENGTH=543	IPR015896 (Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain), IPR016040 (NAD(P)-binding domain)	GO:0008883 (glutamyl-tRNA reductase activity), GO:0033014 (tetrapyrrole biosynthetic process), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09603g04002.1	sp|Q5N8Z0|DRB1_ORYSJ	***-	Double-stranded RNA-binding protein 1	IPR014720 (Double-stranded RNA-binding domain)	
Niben101Scf08072g00013.1	emb|CDX70091.1|	***-	BnaA10g24400D [Brassica napus]	IPR007656 (Zein-binding domain)	
Niben101Scf02470g01010.1			Unknown protein		
Niben101Scf09618g00008.1	sp|Q17R09|PRP16_BOVIN	*-*-	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01677g04003.1	sp|Q928B5|TRXB_LISIN	****	Thioredoxin reductase	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0004791 (thioredoxin-disulfide reductase activity), GO:0005737 (cytoplasm), GO:0016491 (oxidoreductase activity), GO:0019430 (removal of superoxide radicals), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09678g00007.1	AT2G29590.1	*-*-	Thioesterase superfamily protein LENGTH=158		
Niben101Scf11688g00008.1	sp|O45685|MF2NB_CAEEL	--*-	Protein MEF2BNB homolog	IPR019320 (Uncharacterised protein family UPF0402)	
Niben101Scf02827g07014.1			Unknown protein		
Niben101Scf02830g02032.1	sp|B0R660|RS19_HALS3	****	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf05956g00002.1	emb|CDY48253.1|	*-*-	BnaC04g05120D [Brassica napus]		
Niben101Scf01777g03029.1	AT5G14860.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=492	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01758g02006.1			Unknown protein		
Niben101Scf02873g01003.1	AT5G54510.1	*-*-	Auxin-responsive GH3 family protein LENGTH=612	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf02455g02001.1	AT1G15740.1	***-	Leucine-rich repeat family protein LENGTH=585	IPR006553 (Leucine-rich repeat, cysteine-containing subtype), IPR025875 (Leucine rich repeat 4)	
Niben101Scf04294g02007.1	AT4G38380.1	*-*-	MATE efflux family protein LENGTH=560	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf12775g00002.1	ref|XP_002522740.1|	--*-	ccaat-binding transcription factor subunit A, putative [Ricinus communis] gb|EEF39591.1| ccaat-binding transcription factor subunit A, putative [Ricinus communis]		
Niben101Scf14387g00006.1	emb|CDY02995.1|	--*-	BnaC07g22320D [Brassica napus]		
Niben101Scf06823g00017.1	emb|CDX99216.1|	*-*-	BnaC05g33310D [Brassica napus]	IPR004926 (Late embryogenesis abundant protein, LEA-5)	GO:0006950 (response to stress)
Niben101Scf00438g00014.1	gb|AFI44275.1|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Silene vulgaris]		
Niben101Scf01905g00009.1	AT5G35170.1	****	adenylate kinase family protein LENGTH=588	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR018962 (Domain of unknown function DUF1995), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004017 (adenylate kinase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0016776 (phosphotransferase activity, phosphate group as acceptor), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf04331g09019.1	AT5G48720.2	***-	x-ray induced transcript 1 LENGTH=300		
Niben101Scf01290g01025.1	AT5G28080.2	****	Protein kinase superfamily protein LENGTH=492	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00570g03015.1	ref|WP_015114810.1|	*-*-	S-layer protein [N [Nostoc sp. PCC 7107]	IPR001119 (S-layer homology domain)	
Niben101Scf11071g00010.1	sp|O48837|LRKS2_ARATH	--*-	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10919g01037.1	sp|P0A9L7|PPIC_ECO57	--**	Peptidyl-prolyl cis-trans isomerase C	IPR000297 (Peptidyl-prolyl cis-trans isomerase, PpiC-type), IPR023058 (Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site)	GO:0016853 (isomerase activity)
Niben101Scf01383g09023.1	ref|XP_007015330.1|	*-*-	Dgd1 suppressor 1 isoform 1 [Theobroma cacao] gb|EOY32949.1| Dgd1 suppressor 1 isoform 1 [Theobroma cacao]	IPR013946 (Nuclear control of ATP synthase 2)	
Niben101Scf01220g01013.1			Unknown protein		
Niben101Scf06176g01007.1	sp|Q9C9S2|FB91_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Ctg15158g00005.1	sp|B4JBN5|FICD_DROGR	--*-	Adenosine monophosphate-protein transferase FICD homolog	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05216g09017.1	ref|NP_064026.1|	*-*-	orf145 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] dbj|BAA99337.1| orf145 [Beta vulgaris subsp. vulgaris]		
Niben101Scf01970g08002.1	sp|Q940G0|TMN1_ARATH	***-	Transmembrane 9 superfamily member 1	IPR004240 (Nonaspanin (TM9SF)), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane)
Niben101Scf11389g01029.1	sp|Q42430|ZFP1_WHEAT	--*-	Zinc finger protein 1	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf01826g02016.1	sp|Q9ZRB0|TBB3_WHEAT	****	Tubulin beta-3 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0000930 (gamma-tubulin complex), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0007020 (microtubule nucleation), GO:0031122 (cytoplasmic microtubule organization), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf05025g06011.1			Unknown protein		
Niben101Scf03070g08001.1	sp|Q9SEE5|GALK1_ARATH	****	Galactokinase	IPR006206 (Mevalonate/galactokinase)	GO:0004335 (galactokinase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006012 (galactose metabolic process), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0016773 (phosphotransferase activity, alcohol group as acceptor), GO:0046835 (carbohydrate phosphorylation)
Niben101Scf08330g01006.1	AT2G44500.1	***-	O-fucosyltransferase family protein LENGTH=573	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf00765g00007.1	AT1G06170.1	*-*-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=420		
Niben101Scf01519g02001.1	sp|O49484|ASK11_ARATH	-**-	SKP1-like protein 11	IPR016072 (SKP1 component, dimerisation)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf04422g03002.1	AT5G06620.1	***-	SET domain protein 38 LENGTH=325	IPR001214 (SET domain)	GO:0005515 (protein binding)
Niben101Scf02108g04001.1	sp|Q6P1L6|ZN343_HUMAN	--*-	Zinc finger protein 343	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR019786 (Zinc finger, PHD-type, conserved site)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf05396g03003.1	AT3G15030.1	*-*-	TCP family transcription factor 4 LENGTH=420	IPR005333 (Transcription factor, TCP)	
Niben101Scf15166g02003.1	AT5G55970.1	*-*-	RING/U-box superfamily protein LENGTH=343		
Niben101Scf10316g00002.1	AT3G54090.1	*-*-	fructokinase-like 1 LENGTH=471	IPR029056 (Ribokinase-like)	
Niben101Scf02730g01006.1	sp|Q5E992|PPIL1_BOVIN	--**	Peptidyl-prolyl cis-trans isomerase-like 1	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR023222 (PsbQ-like domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf04654g01002.1			Unknown protein		
Niben101Scf01169g00003.1	gb|AFV66580.1|	*-*-	LSG [Saccharum hybrid cultivar]		
Niben101Scf03214g00006.1	AT4G13850.1	*-**	glycine-rich RNA-binding protein 2 LENGTH=158	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf08200g05005.1	AT3G09560.2	*-*-	Lipin family protein LENGTH=904	IPR013209 (LNS2, Lipin/Ned1/Smp2), IPR023214 (HAD-like domain)	
Niben101Scf07183g00018.1	AT4G32410.1	****	cellulose synthase 1 LENGTH=1081	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf02862g00008.1	sp|Q96473|VATL_KALDA	****	V-type proton ATPase 16 kDa proteolipid subunit	IPR000245 (V-ATPase proteolipid subunit), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf25930g00005.1	sp|Q9C7F5|NTF2_ARATH	****	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2)	GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Ctg04970g00001.1	sp|Q9RA11|YU61_VIBMA	--*-	UPF0061 protein ORF18	IPR003846 (Uncharacterised protein family UPF0061)	
Niben101Scf04654g03024.1	sp|Q84LH3|WEX_ARATH	*-**	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf02111g14008.1			Unknown protein		
Niben101Scf01978g01006.1	sp|A2ZX50|NAP1C_ORYSJ	****	Nucleosome assembly protein 1;3	IPR002164 (Nucleosome assembly protein (NAP))	GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf00010g05014.1	sp|Q05B92|TFE3_BOVIN	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf06509g05011.1	sp|Q93ZY3|STT3A_ARATH	***-	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	IPR003674 (Oligosaccharyl transferase, STT3 subunit)	GO:0004576 (oligosaccharyl transferase activity), GO:0006486 (protein glycosylation), GO:0016020 (membrane)
Niben101Scf07589g02001.1	emb|CDX99259.1|	***-	BnaC05g33740D [Brassica napus]		
Niben101Scf02816g12002.1	sp|Q5SD28|CLPP_HUPLU	*-*-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	
Niben101Scf07712g02006.1	AT5G49980.1	***-	auxin F-box protein 5 LENGTH=619	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf07349g00005.1	sp|P55748|CBP22_HORVU	*-**	Serine carboxypeptidase II-2	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00192g01023.1	sp|Q58DW6|RAB25_BOVIN	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02041g01013.1	AT4G35640.1	****	serine acetyltransferase 3;2 LENGTH=355	IPR005881 (Serine O-acetyltransferase)	GO:0005737 (cytoplasm), GO:0006535 (cysteine biosynthetic process from serine), GO:0009001 (serine O-acetyltransferase activity), GO:0016740 (transferase activity)
Niben101Scf17635g01017.1	sp|Q8VYH0|PP313_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01440g04007.1	gb|KEH24170.1|	*-*-	plant/F24K9-26 protein [Medicago truncatula]		
Niben101Scf00606g03009.1	sp|Q9ZPV9|SY112_ARATH	*-*-	Syntaxin-112		
Niben101Scf03098g00008.1	sp|Q14F96|RK23_POPAL	*-*-	50S ribosomal protein L23, chloroplastic	IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01966g00010.1	sp|O35685|NUDC_MOUSE	*-*-	Nuclear migration protein nudC	IPR008978 (HSP20-like chaperone)	
Niben101Scf08160g00001.1	AT3G27730.1	*-**	ATP binding;ATP-dependent helicases;DNA helicases LENGTH=1133	IPR000008 (C2 domain), IPR001650 (Helicase, C-terminal), IPR004179 (Sec63 domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014756 (Immunoglobulin E-set), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf01083g06008.1	AT3G61610.1	***-	Galactose mutarotase-like superfamily protein LENGTH=317	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf03374g02004.1	AT3G60670.1	*-*-	PLATZ transcription factor family protein LENGTH=245	IPR000315 (Zinc finger, B-box), IPR006734 (Protein of unknown function DUF597)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf07345g00009.1	sp|Q49V34|CLPC_STAS1	*-*-	ATP-dependent Clp protease ATP-binding subunit ClpC	IPR019489 (Clp ATPase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf04951g03003.1	gb|ACF21988.1|	*-*-	NBS-coding resistance gene protein [Nicotiana tabacum]		
Niben101Scf14805g03004.1	sp|Q8H157|PTR19_ARATH	***-	Protein NRT1/ PTR FAMILY 4.6	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf07498g02023.1			Unknown protein		
Niben101Scf05929g06001.1	sp|C0MAS5|MUTS_STRE4	*-**	DNA mismatch repair protein MutS	IPR000305 (GIY-YIG nuclease superfamily), IPR000432 (DNA mismatch repair protein MutS, C-terminal), IPR016151 (DNA mismatch repair protein MutS, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf23248g00010.1	ref|XP_002883165.1|	*-**	DNA binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH59424.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf06183g07006.1	AT1G49160.2	*-**	Protein kinase superfamily protein LENGTH=557	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01481g01006.1	sp|Q9FLS0|FB253_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf10036g01001.1	sp|Q8S8V2|YCF2A_ATRBE	*-*-	Protein Ycf2 A		
Niben101Scf10142g00013.1	emb|CDX88502.1|	***-	BnaC06g39460D [Brassica napus]		
Niben101Scf04098g00017.1	sp|Q9CR16|PPID_MOUSE	****	Peptidyl-prolyl cis-trans isomerase D	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf24096g00036.1	sp|Q8LGU6|CD27B_ARATH	*-*-	Cell division cycle protein 27 homolog B	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02108g00007.1	AT3G17690.1	***-	cyclic nucleotide gated channel 19 LENGTH=729	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf13703g00014.1	sp|Q5GS83|CLPP_WOLTR	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf16234g01022.1	AT1G11925.1	***-	Stigma-specific Stig1 family protein LENGTH=140	IPR006969 (Stigma-specific protein Stig1)	
Niben101Scf00747g01026.1	sp|Q9LTR9|NMT1_ARATH	****	Glycylpeptide N-tetradecanoyltransferase 1	IPR000903 (Myristoyl-CoA:protein N-myristoyltransferase)	GO:0004379 (glycylpeptide N-tetradecanoyltransferase activity), GO:0006499 (N-terminal protein myristoylation)
Niben101Scf03371g02022.1	sp|Q91WC7|NPAL2_MOUSE	--*-	NIPA-like protein 2	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf00150g04010.1	gb|KEH20373.1|	--*-	rRNA-processing EBP2-like protein [Medicago truncatula]		
Niben101Scf06153g02014.1			Unknown protein		
Niben101Scf01516g00001.1	sp|P16520|GBB3_HUMAN	*-**	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3	IPR007319 (Small-subunit processome, Utp21), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0006364 (rRNA processing), GO:0032040 (small-subunit processome)
Niben101Scf01681g01008.1	sp|P78968|PPZ_SCHPO	--*-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf01383g05021.1	sp|Q6UX07|DHR13_HUMAN	*-**	Dehydrogenase/reductase SDR family member 13	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf03280g00023.1	sp|O24648|G3OX_PEA	*-*-	Gibberellin 3-beta-dioxygenase 1	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf08926g08032.1			Unknown protein		
Niben101Scf09109g01017.1	sp|Q9LJG8|ASIL2_ARATH	*-*-	Trihelix transcription factor ASIL2	IPR006578 (MADF domain), IPR017877 (Myb-like domain)	
Niben101Scf02287g01008.1			Unknown protein		
Niben101Scf01210g00004.1	sp|A5FZ52|ATPA_ACICJ	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01181g01008.1	sp|P36408|GBB_DICDI	*-**	Guanine nucleotide-binding protein subunit beta	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05145g00003.1	sp|O64784|Y1136_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR003609 (Apple-like)	
Niben101Scf00524g02007.1	sp|Q9AWA5|GWD1_SOLTU	*-*-	Alpha-glucan water dikinase, chloroplastic		
Niben101Scf05302g05007.1			Unknown protein		
Niben101Scf14323g02012.1	sp|Q4V7B8|RNF44_RAT	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf17137g00008.1	AT2G44420.1	****	protein N-terminal asparagine amidohydrolase family protein LENGTH=347	IPR026750 (Protein N-terminal asparagine amidohydrolase)	GO:0008418 (protein-N-terminal asparagine amidohydrolase activity)
Niben101Scf01154g11014.1	sp|Q9SIB4|WOX3_ARATH	***-	WUSCHEL-related homeobox 3	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf04973g00008.1	sp|Q6D5W6|MDTK_PECAS	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf07590g03006.1	sp|P28394|RBL_CORMY	*-**	Ribulose bisphosphate carboxylase large chain	IPR017443 (Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf03427g10006.1	AT1G28510.1	***-	Optic atrophy 3 protein (OPA3) LENGTH=171	IPR010754 (Optic atrophy 3-like)	
Niben101Scf00015g00001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01310g05007.1	dbj|BAB11196.1|	--*-	mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf00775g05001.1			Unknown protein		
Niben101Scf02761g01006.1	ref|NP_849757.4|	*-*-	plant transposase (Ptta/En/Spm family) [Arabidopsis thaliana] gb|AEE31905.1| plant transposase (Ptta/En/Spm family) [Arabidopsis thaliana]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf05809g00004.1	sp|A2YQL4|SCRK2_ORYSI	***-	Fructokinase-2	IPR029056 (Ribokinase-like)	
Niben101Scf06541g00002.1	AT2G29680.1	***-	cell division control 6 LENGTH=539	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR016314 (Cell division protein Cdc6/18), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf04706g00006.1	AT5G65470.1	***-	O-fucosyltransferase family protein LENGTH=504	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf08936g06003.1	AT5G50760.1	***-	SAUR-like auxin-responsive protein family LENGTH=183	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf06375g00022.1	sp|Q9FGY1|BXL1_ARATH	***-	Beta-D-xylosidase 1	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02029g00004.1	sp|Q40459|PSBO_TOBAC	****	Oxygen-evolving enhancer protein 1, chloroplastic	IPR002628 (Photosystem II PsbO, manganese-stabilising), IPR011250 (Outer membrane protein/outer membrane enzyme PagP , beta-barrel)	GO:0005509 (calcium ion binding), GO:0009279 (cell outer membrane), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019898 (extrinsic component of membrane), GO:0042549 (photosystem II stabilization)
Niben101Scf01142g03003.1	gb|ACG39388.1|	***-	adenylate cyclase [Zea mays]	IPR023577 (CYTH-like domain)	
Niben101Scf10022g00008.1	AT5G19010.1	*-**	mitogen-activated protein kinase 16 LENGTH=567	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00854g01003.1	sp|P60620|COX1_ARATH	****	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023615 (Cytochrome c oxidase, subunit I, copper-binding site), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02201g00003.1	ref|XP_007041617.1|	***-	Integral membrane protein hemolysin-III, putative isoform 1 [Theobroma cacao] ref|XP_007041618.1| Integral membrane protein hemolysin-III, putative isoform 1 [Theobroma cacao] ref|XP_007041619.1| Integral membrane protein hemolysin-III, putative isoform 1 [Theobroma cacao] gb|EOX97448.1| Integral membrane protein hemolysin-III, putative isoform 1 [Theobroma cacao] gb|EOX97449.1| Integral membrane protein hemolysin-III, putative isoform 1 [Theobroma cacao] gb|EOX97450.1| Integral membrane protein hemolysin-III, putative isoform 1 [Theobroma cacao]		
Niben101Scf01936g06010.1	AT4G39860.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=299	IPR025131 (Domain of unknown function DUF4057)	
Niben101Scf06016g02017.1	sp|Q17QU7|DHR13_BOVIN	*-**	Dehydrogenase/reductase SDR family member 13	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf00854g11081.1			Unknown protein		
Niben101Scf05035g01015.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg06620g00001.1	AT2G34290.1	****	Protein kinase superfamily protein LENGTH=265	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06180g00018.1	sp|Q5J4W4|MPK2_ORYSJ	*-*-	Mitogen-activated protein kinase 2		
Niben101Scf02111g11033.1	sp|Q6C784|FIP1_YARLI	*-*-	Pre-mRNA polyadenylation factor FIP1	IPR007854 (Pre-mRNA polyadenylation factor Fip1)	
Niben101Scf02085g27023.1	ref|NP_001059739.1|	*-*-	product [Oryza sativa Japonica Group]	IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf01872g00009.1	sp|Q9FY19|PGLR2_JUNAS	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00702g00004.1	gb|AII50299.1|	***-	membrane protein [Synechococcus sp. KORDI-52]	IPR019275 (Protein of unknown function DUF2301)	
Niben101Scf03878g00004.1	sp|Q9VP48|RAB26_DROME	--*-	Ras-related protein Rab-26	IPR013684 (Mitochondrial Rho-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf04146g03014.1	sp|A5GFS8|VAPB_PIG	*-**	Vesicle-associated membrane protein-associated protein B	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf04987g00001.1	sp|A6QRA1|NRPE7_ARATH	***-	DNA-directed RNA polymerase V subunit 7	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf04096g04010.1	sp|Q86IZ4|IPP2_DICDI	--**	Protein phosphatase inhibitor 2	IPR007062 (Protein phosphatase inhibitor 2 (IPP-2))	GO:0004864 (protein phosphatase inhibitor activity), GO:0009966 (regulation of signal transduction), GO:0043666 (regulation of phosphoprotein phosphatase activity)
Niben101Scf04790g01013.1	sp|Q10CQ1|MAD14_ORYSJ	*-*-	MADS-box transcription factor 14	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf02007g07004.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf09435g00003.1			Unknown protein		
Niben101Scf05749g01008.1	AT1G49890.1	***-	Family of unknown function (DUF566) LENGTH=659	IPR007573 (Protein of unknown function DUF566)	
Niben101Scf05301g02004.1	sp|Q6L545|GID1_ORYSJ	***-	Gibberellin receptor GID1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf03435g02022.1	sp|P28178|PK2_DICDI	****	Protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13308g00002.1	sp|Q7SYK0|CHID1_DANRE	*-*-	Chitinase domain-containing protein 1		
Niben101Scf05776g01051.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf06542g00010.1	AT3G26040.1	*-**	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf09015g02008.1	sp|Q84K34|SIL10_ARATH	****	E3 ubiquitin-protein ligase SINA-like 10	IPR004162 (E3 ubiquitin-protein ligase SINA like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf03128g04008.1	sp|Q4QQW1|REEP4_RAT	*-*-	Receptor expression-enhancing protein 4	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf13974g00003.1	sp|Q9FE06|EXOL2_ARATH	***-	Protein EXORDIUM-like 2	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf04398g01001.1			Unknown protein		
Niben101Scf03150g02011.1	AT1G25530.1	***-	Transmembrane amino acid transporter family protein LENGTH=440	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf02688g04013.1	sp|B2T7X5|TDH_BURPP	***-	L-threonine 3-dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05605g00045.1	sp|P00411|COX2_NEUCR	*-**	Cytochrome c oxidase subunit 2	IPR008972 (Cupredoxin)	GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0016020 (membrane)
Niben101Scf00293g07003.1	sp|B0K657|FTSH2_THEPX	*-**	ATP-dependent zinc metalloprotease FtsH 2	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01559g04004.1	sp|Q500W7|PIGM_ARATH	****	GPI mannosyltransferase 1	IPR007704 (Mannosyltransferase, DXD)	GO:0005789 (endoplasmic reticulum membrane), GO:0006506 (GPI anchor biosynthetic process), GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06898g03010.1	ref|WP_025945047.1|	***-	MULTISPECIES: short-chain dehydrogenase [Prochlorococcus]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf04388g02008.1	gb|AGT75396.1|	*-*-	CC-NBS-LRR disease resistance protein [Cicer arietinum]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf11379g00016.1			Unknown protein		
Niben101Scf00539g02028.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06535g04007.1	gb|KEH35633.1|	--*-	nucleotidyltransferase family protein [Medicago truncatula]		
Niben101Scf02858g01001.1	sp|P04105|TBAN_PHYPO	***-	Tubulin alpha-1B chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf00254g06014.1			Unknown protein		
Niben101Scf03203g08003.1	AT3G07470.1	***-	Protein of unknown function, DUF538 LENGTH=169	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf04290g04008.1	sp|Q9FUT0|GSTU9_ARATH	*-*-	Glutathione S-transferase U9	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf03753g00020.1	AT2G02370.1	***-	SNARE associated Golgi protein family LENGTH=320		
Niben101Scf00173g09005.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06025g02020.1	sp|Q8RWU6|NHX6_ARATH	****	Sodium/hydrogen exchanger 6	IPR006153 (Cation/H+ exchanger), IPR018422 (Cation/H+ exchanger, CPA1 family)	GO:0006812 (cation transport), GO:0006814 (sodium ion transport), GO:0006885 (regulation of pH), GO:0015299 (solute:proton antiporter activity), GO:0015385 (sodium:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01808g01001.1	AT4G14100.1	***-	transferases, transferring glycosyl groups LENGTH=206		
Niben101Scf02459g02007.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05437g00011.1	AT5G63890.2	*-**	histidinol dehydrogenase LENGTH=466	IPR012131 (Histidinol dehydrogenase)	GO:0000105 (histidine biosynthetic process), GO:0004399 (histidinol dehydrogenase activity), GO:0008270 (zinc ion binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01859g03007.1	emb|CDY52160.1|	*-*-	BnaA02g34690D [Brassica napus]		
Niben101Scf00884g00015.1	sp|Q9BUZ4|TRAF4_HUMAN	*-*-	TNF receptor-associated factor 4	IPR008974 (TRAF-like)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf06408g04009.1	sp|Q8LED3|TBL3_ARATH	***-	Protein trichome birefringence-like 3	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf03877g00006.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf03330g00013.1	AT2G04540.1	***-	Beta-ketoacyl synthase LENGTH=461	IPR017568 (3-oxoacyl-[acyl-carrier-protein] synthase 2), IPR020841 (Polyketide synthase, beta-ketoacyl synthase domain)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf13676g00012.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR001878 (Zinc finger, CCHC-type), IPR004087 (K Homology domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0008270 (zinc ion binding)
Niben101Scf20077g00032.1	sp|Q9Y259|CHKB_HUMAN	****	Choline/ethanolamine kinase	IPR011009 (Protein kinase-like domain), IPR026712 (Choline/Ethanolamine kinase)	GO:0016301 (kinase activity), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0046474 (glycerophospholipid biosynthetic process)
Niben101Scf04955g07012.1	sp|Q9M9F9|ICR4_ARATH	*-*-	Interactor of constitutive active ROPs 4		
Niben101Scf07580g05002.1	emb|CDX73934.1|	*-*-	BnaA03g31130D [Brassica napus]	IPR010605 (Protein of unknown function DUF1191)	
Niben101Scf00402g04005.1	sp|A4ULF8|METK_MEDSF	*-**	S-adenosylmethionine synthase	IPR002133 (S-adenosylmethionine synthetase)	GO:0004478 (methionine adenosyltransferase activity), GO:0005524 (ATP binding), GO:0006556 (S-adenosylmethionine biosynthetic process)
Niben101Scf08108g00003.1	AT2G29670.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=536	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03953g03021.1	dbj|BAD66730.1|	-**-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf00149g10003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR000742 (Epidermal growth factor-like domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf08587g00003.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00017g00002.1	sp|Q9CZU3|SK2L2_MOUSE	*-*-	Superkiller viralicidic activity 2-like 2	IPR012961 (DSH, C-terminal), IPR025696 (rRNA-processing arch domain)	GO:0005524 (ATP binding), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf26981g00007.1	sp|Q9ZUU0|WRK44_ARATH	*-**	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03047g01008.1	AT3G22104.1	***-	Phototropic-responsive NPH3 family protein LENGTH=506	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf03766g16003.1			Unknown protein		
Niben101Scf07226g07007.1	sp|Q9R0S5|YLAT1_RAT	****	Y+L amino acid transporter 1	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf00188g02003.1	sp|Q9ZTA1|AOP3C_ARATH	*-**	2-oxoglutarate-dependent dioxygenase AOP3	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00463g00018.1	sp|Q58DW6|RAB25_BOVIN	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf13150g01002.1	ref|NP_179175.3|	*-*-	P-loop containing nucle [Arabidopsis thaliana]		
Niben101Scf05311g01005.1	sp|Q07262|1A1C_TOBAC	*-*-	1-aminocyclopropane-1-carboxylate synthase		
Niben101Scf00634g00006.1	sp|Q95BZ7|MATK_ACTDE	***-	Maturase K	IPR024937 (Domain X), IPR024942 (Maturase MatK, N-terminal domain)	GO:0006397 (mRNA processing)
Niben101Scf00170g05041.1	AT1G30800.1	*-*-	Fasciclin-like arabinogalactan family protein LENGTH=239	IPR000782 (FAS1 domain)	
Niben101Scf08873g01022.1	AT5G50160.1	*-**	ferric reduction oxidase 8 LENGTH=728	IPR013121 (Ferric reductase, NAD binding)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06119g00005.1	gb|KEH35108.1|	***-	late embryogenesis abundant hydroxyproline-rich glycoprotein, putative [Medicago truncatula]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf01076g01011.1	sp|Q9ZUW3|PP172_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04292g12002.1	ref|NP_197030.2|	****	rib [Arabidopsis thaliana]	IPR008195 (Ribosomal protein L34Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02663g00027.1	ref|WP_029673270.1|	***-	nucleoside-diphosphate sugar epimerase [Brevundimonas naejangsanensis]	IPR009367 (Mitochondrial fission protein ELM1-like)	
Niben101Scf03648g01004.1	sp|B0C431|RS11_ACAM1	***-	30S ribosomal protein S11	IPR001971 (Ribosomal protein S11)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04173g03011.1	AT4G28500.1	***-	NAC domain containing protein 73 LENGTH=305	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03062g07004.1	sp|Q9SRL8|LBD21_ARATH	***-	LOB domain-containing protein 21	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf00425g03030.1	sp|Q08435|PMA1_NICPL	*-*-	Plasma membrane ATPase 1	IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR008250 (P-type ATPase, A  domain), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0046872 (metal ion binding)
Niben101Scf09773g00002.1	emb|CDY40217.1|	***-	BnaA09g34990D [Brassica napus]		
Niben101Scf00712g14001.1	ref|XP_007018039.1|	****	Hedgehog receptor, putative isoform 1 [Theobroma cacao] gb|EOY15264.1| Hedgehog receptor, putative isoform 1 [Theobroma cacao]	IPR003392 (Patched)	GO:0008158 (hedgehog receptor activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf02383g01001.1	sp|O04203|HSPR2_ARATH	***-	Nematode resistance protein-like HSPRO2	IPR009743 (Hs1pro-1, C-terminal), IPR009869 (Hs1pro-1, N-terminal)	
Niben101Ctg14907g00001.1	tpg|DAA40947.1|	--*-	TPA: hypothetical protein ZEAMMB73_945312 [Zea mays]		
Niben101Scf08566g02007.1	sp|Q7XJE6|MCA1_ARATH	***-	Metacaspase-1	IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03867g02037.1	sp|P74158|SUHB_SYNY3	****	Inositol-1-monophosphatase	IPR000760 (Inositol monophosphatase)	GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf12112g02004.1	sp|Q2HIM9|RLF31_ARATH	***-	Protein RALF-like 31	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf08819g01015.1	sp|Q9FFR9|CHX18_ARATH	****	Cation/H(+) antiporter 18	IPR006153 (Cation/H+ exchanger), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf05678g02004.1	sp|Q55G18|POMP_DICDI	***-	Proteasome maturation protein homolog	IPR008012 (Proteasome maturation factor UMP1)	
Niben101Scf02636g08006.1	sp|Q84W80|FBL42_ARATH	--*-	F-box/LRR-repeat protein		
Niben101Scf03986g01005.1	sp|F4J2Z7|SDR4_ARATH	--*-	Short-chain dehydrogenase reductase 4	IPR016040 (NAD(P)-binding domain)	
Niben101Scf03238g00012.1	AT2G19710.1	*-*-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=937	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf00272g08001.1	sp|Q38864|EXPA5_ARATH	***-	Expansin-A5	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf06348g00027.1	AT1G01840.1	***-	unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=152		
Niben101Scf13758g00012.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf13289g02003.1	sp|Q5M9Q1|NKAPL_HUMAN	*-*-	NKAP-like protein	IPR009269 (Protein of unknown function DUF926)	
Niben101Scf01326g00005.1	AT1G51700.1	*-*-	DOF zinc finger protein 1 LENGTH=194	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00988g06017.1	sp|O14775|GBB5_HUMAN	****	Guanine nucleotide-binding protein subunit beta-5	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf09535g01010.1	gb|AEM24937.1|	-**-	thionin-like protein [Nicotiana tabacum]		
Niben101Scf02525g04005.1	sp|Q54TL0|KIF7_DICDI	*-**	Kinesin-related protein 7	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00272g03002.1	sp|Q9D1D4|TMEDA_MOUSE	***-	Transmembrane emp24 domain-containing protein 10	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf00971g00009.1	dbj|BAD90706.1|	*-*-	plastid DNA-binding protein [Brassica napus]		
Niben101Scf02250g01014.1	gb|AES64319.2|	*-*-	SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein [Medicago truncatula]		
Niben101Scf01005g04003.1			Unknown protein		
Niben101Scf13394g00029.1	sp|Q9SUQ8|DIR6_ARATH	*-*-	Dirigent protein 6	IPR004265 (Plant disease resistance response protein)	
Niben101Scf16127g00004.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf09130g00007.1	sp|Q6AWY6|GRF3_ORYSJ	***-	Growth-regulating factor 3	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf02738g02001.1	AT3G02468.1	*-*-	conserved peptide upstream open reading frame 9 LENGTH=52	IPR012511 (S-adenosyl-l-methionine decarboxylase leader peptide)	
Niben101Scf00248g02023.1	sp|Q9FIX3|PP407_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00530g04002.1	sp|O64896|TPPA_ARATH	****	Trehalose-phosphate phosphatase A	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf10885g00014.1	ref|XP_002512046.1|	****	nucleic acid binding protein, putative [Ricinus communis] gb|EEF50715.1| nucleic acid binding protein, putative [Ricinus communis]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf03885g05004.1	ref|XP_002526661.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35683.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01236g02016.1	sp|Q8GTL5|METK_CARPA	****	S-adenosylmethionine synthase	IPR002133 (S-adenosylmethionine synthetase)	GO:0004478 (methionine adenosyltransferase activity), GO:0005524 (ATP binding), GO:0006556 (S-adenosylmethionine biosynthetic process)
Niben101Scf00959g00013.1	ref|XP_002530814.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF31582.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05554g07001.1	ref|XP_007018984.1|	*-*-	O-fuc isoform 1 [Theobroma cacao]		
Niben101Scf03487g00001.1	ref|XP_002313640.2|	-**-	agenet domain-containing family protein [Populus trichocarpa] gb|EEE87595.2| agenet domain-containing family protein [Populus trichocarpa]		
Niben101Scf07086g00017.1	gb|AGY62799.1|	*-*-	orf148 (mitochondrion) [Eruca vesicaria subsp. sativa] gb|AHY20342.1| hypothetical protein (mitochondrion) (mitochondrion) [Brassica juncea var. tumida] gb|AIC83308.1| orf148 (mitochondrion) [Brassica oleracea var. botrytis]		
Niben101Scf11480g03028.1	AT1G56350.1	****	Peptide chain release factor 2 LENGTH=482	IPR004374 (Peptide chain release factor 2), IPR014720 (Double-stranded RNA-binding domain)	GO:0003747 (translation release factor activity), GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf00883g04005.1	emb|CDX75447.1|	--*-	BnaA01g02550D [Brassica napus]		
Niben101Scf01696g02009.1	AT1G55190.1	***-	PRA1 (Prenylated rab acceptor) family protein LENGTH=189	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf07742g02002.1	AT3G47550.3	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=288	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022143 (Protein of unknown function DUF3675)	GO:0008270 (zinc ion binding)
Niben101Scf03278g04017.1	sp|A2RRH5|WDR27_HUMAN	--*-	WD repeat-containing protein 27	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf02653g04017.1	AT2G39795.1	****	Mitochondrial glycoprotein family protein LENGTH=250	IPR003428 (Mitochondrial glycoprotein)	GO:0005759 (mitochondrial matrix)
Niben101Scf08179g02013.1	AT5G61630.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=147		
Niben101Scf03329g00006.1	AT2G37980.1	***-	O-fucosyltransferase family protein LENGTH=638	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf02614g00008.1	ref|XP_002533342.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF29041.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf06584g01001.1	sp|Q9ZPY7|XPO2_ARATH	*-*-	Exportin-2	IPR013713 (Exportin/Importin, Cse1-like)	GO:0006886 (intracellular protein transport)
Niben101Scf01046g03001.1	AT3G48710.1	*-*-	DEK domain-containing chromatin associated protein LENGTH=462	IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding)
Niben101Scf06570g05019.1			Unknown protein		
Niben101Scf25973g00004.1	sp|Q8K4M9|OSBL1_RAT	--**	Oxysterol-binding protein-related protein 1	IPR014710 (RmlC-like jelly roll fold), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf07391g00010.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02010g04012.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf18430g00009.1	sp|Q8IUS5|EPHX4_HUMAN	***-	Epoxide hydrolase 4	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf00442g09003.1	sp|P40280|H2A_MAIZE	*-*-	Histone H2A	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf02868g05007.1	sp|O04173|TAF10_ARATH	****	Transcription initiation factor TFIID subunit 10	IPR003923 (Transcription initiation factor TFIID, 23-30kDa subunit)	GO:0005634 (nucleus), GO:0006352 (DNA-templated transcription, initiation)
Niben101Scf05035g01018.1	sp|Q9LPM9|BCAT6_ARATH	***-	Branched-chain-amino-acid aminotransferase 6	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00087g07001.1	sp|A6MFK9|CRVP_DEMVE	***-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf07895g03006.1	ref|WP_016706512.1|	*-*-	spermidine synthase [Pseudoalteromonas haloplanktis]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01267g02011.1	AT2G19170.1	****	subtilisin-like serine protease 3 LENGTH=815	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04083g01008.1	sp|Q9M376|VA727_ARATH	*-*-	Vesicle-associated membrane protein 727	IPR011012 (Longin-like domain)	GO:0006810 (transport)
Niben101Scf01052g02005.1	AT4G10720.1	***-	Ankyrin repeat family protein LENGTH=445	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf08673g02020.1	sp|Q6X7J3|WOX11_ARATH	***-	WUSCHEL-related homeobox 11	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf03292g00006.1	sp|Q94A79|DMS3_ARATH	*-*-	Protein DEFECTIVE IN MERISTEM SILENCING 3		
Niben101Scf00150g02005.1	AT5G19830.1	****	Peptidyl-tRNA hydrolase family protein LENGTH=219	IPR001328 (Peptidyl-tRNA hydrolase)	GO:0004045 (aminoacyl-tRNA hydrolase activity)
Niben101Scf13411g00005.1	gb|AFJ53042.1|	*-*-	UDP-glycosyltransferase 1 [Linum usitatissimum]		
Niben101Scf05750g00009.1	sp|P30827|RBL_LIRTU	****	Ribulose bisphosphate carboxylase large chain	IPR000685 (Ribulose bisphosphate carboxylase, large subunit, C-terminal), IPR017443 (Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf00679g01008.1	emb|CDY49520.1|	*-*-	BnaC05g03320D [Brassica napus]	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf02869g00002.1	ref|XP_007050168.1|	*-*-	Nuclear transport factor 2 family protein with RNA binding domain [Theobroma cacao] gb|EOX94325.1| Nuclear transport factor 2 family protein with RNA binding domain [Theobroma cacao]		
Niben101Scf05776g01011.1	gb|AGI48806.1|	*-*-	transport membrane protein (mitochondrion) [Lolium perenne]		
Niben101Scf10505g00007.1	sp|P55059|PDI_HUMIN	****	Protein disulfide-isomerase	IPR005792 (Protein disulphide isomerase), IPR012336 (Thioredoxin-like fold)	GO:0005783 (endoplasmic reticulum), GO:0016853 (isomerase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03099g03001.1	sp|Q92263|G3P_PICPA	***-	Glyceraldehyde-3-phosphate dehydrogenase	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf01616g00007.1	sp|Q9SIU2|NCBP1_ARATH	****	Nuclear cap-binding protein subunit 1	IPR016024 (Armadillo-type fold), IPR027159 (Nuclear cap-binding protein subunit 1)	GO:0000339 (RNA cap binding), GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding), GO:0005846 (nuclear cap binding complex), GO:0016070 (RNA metabolic process), GO:0045292 (mRNA cis splicing, via spliceosome), GO:0051028 (mRNA transport)
Niben101Scf02239g00001.1			Unknown protein		
Niben101Scf34945g00001.1	AT1G61105.1	***-	Toll-Interleukin-Resistance (TIR) domain family protein LENGTH=188	IPR000157 (Toll/interleukin-1 receptor homology (TIR) domain)	GO:0005515 (protein binding), GO:0007165 (signal transduction)
Niben101Scf02541g10024.1	sp|Q5ZA07|C3H41_ORYSJ	***-	E3 ubiquitin-protein ligase makorin	IPR000571 (Zinc finger, CCCH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf08719g00002.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf16868g00005.1	AT1G21920.1	***-	Histone H3 K4-specific methyltransferase SET7/9 family protein LENGTH=417	IPR003409 (MORN motif)	
Niben101Scf11999g00009.1	AT1G49890.1	***-	Family of unknown function (DUF566) LENGTH=659	IPR007573 (Protein of unknown function DUF566)	
Niben101Scf00854g03015.1	ref|XP_002529236.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF33149.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf10968g03021.1	sp|Q54G07|SLMO_DICDI	***-	Protein slowmo homolog	IPR006797 (PRELI/MSF1)	
Niben101Scf09248g00003.1	sp|O65238|Y5537_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain)	
Niben101Scf06078g01001.1			Unknown protein		
Niben101Scf02133g11005.1	gb|KEH42665.1|	-**-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf03128g00001.1	gb|ABA97681.2|	*-*-	retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]		
Niben101Scf03337g04002.1	ref|XP_002511663.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF50332.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01782g03006.1	AT1G03220.1	***-	Eukaryotic aspartyl protease family protein LENGTH=433	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01359g01001.1			Unknown protein		
Niben101Scf02395g03010.1	sp|P50218|IDHC_TOBAC	****	Isocitrate dehydrogenase [NADP]	IPR004790 (Isocitrate dehydrogenase NADP-dependent), IPR024084 (Isopropylmalate dehydrogenase-like domain)	GO:0000287 (magnesium ion binding), GO:0004450 (isocitrate dehydrogenase (NADP+) activity), GO:0006102 (isocitrate metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01006g02009.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR015757 (Calcineurin B protein)	GO:0005509 (calcium ion binding)
Niben101Scf02543g02015.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf09217g01002.1	sp|Q8BUH7|RNF26_MOUSE	--*-	Ring finger protein 26	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03506g03010.1	AT4G12700.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=561		
Niben101Scf10322g00006.1	AT5G15270.2	****	RNA-binding KH domain-containing protein LENGTH=548	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf18214g00003.1	gb|KFQ17498.1|	*-*-	UPF0369 protein C6orf57, partial [Merops nubicus]	IPR012875 (Protein of unknown function DUF1674)	
Niben101Scf04451g00022.1	sp|Q2VZN0|ATPA_MAGSA	****	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf02041g04019.1	AT4G16444.1	***-	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages;		
Niben101Scf06081g04007.1	emb|CDY26231.1|	***-	BnaA06g11860D [Brassica napus]		
Niben101Scf09565g01010.1	sp|Q144P9|PYRB_BURXL	--*-	Aspartate carbamoyltransferase		
Niben101Scf02074g00018.1	ref|XP_002529236.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF33149.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01428g03001.1	AT4G14420.1	***-	HR-like lesion-inducing protein-related LENGTH=158	IPR008637 (HR-like lesion-inducer)	
Niben101Scf00823g00001.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf04060g02001.1	ref|NP_001041807.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf04192g00014.1	sp|Q5XHG1|NSMA3_XENLA	*-**	Sphingomyelin phosphodiesterase 4	IPR024129 (Sphingomyelin phosphodiesterase 4)	GO:0050290 (sphingomyelin phosphodiesterase D activity)
Niben101Scf05483g03002.1	ref|XP_002862932.1|	***-	oxidoreductase/ transition metal ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH39191.1| oxidoreductase/ transition metal ion binding protein [Arabidopsis lyrata subsp. lyrata]		
Niben101Scf02041g01016.1	sp|C5D6U5|MENE_GEOSW	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf12308g00005.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10126g00015.1	gb|KEH23114.1|	--*-	DUF674 family protein [Medicago truncatula]		
Niben101Scf05938g01018.1	ref|WP_017641917.1|	*-*-	acetyltransferase [Pseudomonas sp. 313]	IPR016181 (Acyl-CoA N-acyltransferase)	
Niben101Scf03166g00008.1	sp|P56333|IF5A1_SOLTU	****	Eukaryotic translation initiation factor 5A-1/2	IPR001884 (Translation elongation factor IF5A)	GO:0003723 (RNA binding), GO:0003746 (translation elongation factor activity), GO:0006452 (translational frameshifting), GO:0043022 (ribosome binding), GO:0045901 (positive regulation of translational elongation), GO:0045905 (positive regulation of translational termination)
Niben101Scf03362g00002.1	sp|Q8VYR3|TBL2_ARATH	*-*-	Protein trichome birefringence-like 2	IPR026057 (PC-Esterase)	
Niben101Scf00177g09018.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01968g01001.1	gb|EMS68778.1|	*-*-	Riboflavin biosynthesis protein RibD [Triticum urartu]	IPR024072 (Dihydrofolate reductase-like domain)	
Niben101Scf02878g02007.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01051g03004.1	gb|KEH19717.1|	*-*-	transmembrane amino acid transporter family protein [Medicago truncatula]		
Niben101Scf05822g01002.1	gb|ADX62208.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia calycina]		
Niben101Scf08179g00007.1	sp|Q2KI09|TCEA3_BOVIN	****	Transcription elongation factor A protein 3	IPR003618 (Transcription elongation factor S-II, central domain), IPR016492 (Transcription elongation factor, TFIIS-related), IPR017923 (Transcription factor IIS, N-terminal)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0008270 (zinc ion binding), GO:0032784 (regulation of DNA-templated transcription, elongation)
Niben101Scf00919g04003.1			Unknown protein		
Niben101Scf01177g05011.1	AT3G01420.1	*-**	Peroxidase superfamily protein LENGTH=639	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02303g00008.1	AT1G07710.1	***-	Ankyrin repeat family protein LENGTH=543	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf20959g00001.1	sp|A5FX21|NUON1_ACICJ	*-*-	NADH-quinone oxidoreductase subunit N 1	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf02085g07003.1	sp|P45376|ALDR_MOUSE	****	Aldose reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02485g01006.1	ref|XP_002535305.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF27078.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06017g01010.1	sp|Q96524|CRY2_ARATH	***-	Cryptochrome-2	IPR002081 (Cryptochrome/DNA photolyase, class 1)	GO:0003913 (DNA photolyase activity), GO:0006281 (DNA repair)
Niben101Scf00176g00005.1	AT1G11430.1	***-	plastid developmental protein DAG, putative LENGTH=232		
Niben101Scf08709g00003.1	sp|Q6ZSG1|RN165_HUMAN	*-*-	RING finger protein 165	IPR010543 (Domain of unknown function DUF1117), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09825g01009.1			Unknown protein		
Niben101Scf03142g04007.1			Unknown protein		
Niben101Scf03772g02017.1	sp|O23305|Y4449_ARATH	*-*-	FHA domain-containing protein	IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf02486g06002.1	sp|P31562|ACCD_CUSRE	*-*-	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	IPR029045 (ClpP/crotonase-like domain)	
Niben101Scf06625g01012.1	sp|A2RRP1|NBAS_HUMAN	*-*-	Neuroblastoma-amplified sequence	IPR013244 (Sec39 domain), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0006890 (retrograde vesicle-mediated transport, Golgi to ER)
Niben101Scf00173g05015.1	sp|Q99JF5|MVD1_MOUSE	****	Diphosphomevalonate decarboxylase	IPR005935 (Diphosphomevalonate/phosphomevalonate decarboxylase)	GO:0004163 (diphosphomevalonate decarboxylase activity), GO:0005524 (ATP binding), GO:0005829 (cytosol), GO:0008299 (isoprenoid biosynthetic process), GO:0016831 (carboxy-lyase activity), GO:0019287 (isopentenyl diphosphate biosynthetic process, mevalonate pathway)
Niben101Scf02042g03032.1	sp|Q6PGE4|ZF316_MOUSE	--*-	Zinc finger protein 316	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf02102g01014.1	AT4G12520.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=129	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf18589g00011.1	sp|P54928|IMP3_SOLLC	****	Inositol monophosphatase 3	IPR000760 (Inositol monophosphatase)	GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf06516g00001.1	sp|Q9FY69|BH143_ARATH	***-	Transcription factor bHLH143	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf07639g02005.1	AT2G44670.1	***-	Protein of unknown function (DUF581) LENGTH=93	IPR007650 (Zf-FLZ domain)	
Niben101Scf01290g01028.1	AT2G30400.1	*-*-	ovate family protein 2 LENGTH=320	IPR006458 (Ovate  protein family, C-terminal), IPR025830 (DNA-binding domain, ovate family-like)	GO:0003677 (DNA binding)
Niben101Scf02618g04024.1			Unknown protein		
Niben101Scf08240g01016.1	sp|Q0W5R8|RNH2_UNCMA	****	Ribonuclease HII	IPR001352 (Ribonuclease HII/HIII), IPR012337 (Ribonuclease H-like domain), IPR023160 (Ribonuclease HII, helix-loop-helix cap domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity), GO:0016070 (RNA metabolic process)
Niben101Scf01832g01008.1	sp|Q9SIT7|PP151_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf08381g00003.1	gb|ADQ00387.1|	***-	ring E3 ubiquitin ligase [Triticum aestivum]		
Niben101Scf06769g03007.1	emb|CDY14988.1|	*-*-	BnaA10g08680D [Brassica napus]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1), IPR015410 (Domain of unknown function DUF1985)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf11609g00001.1			Unknown protein		
Niben101Scf00369g09017.1	sp|P36612|PRS4_SCHPO	***-	26S protease regulatory subunit 4 homolog	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf02416g01011.1	sp|O80722|PME4_ARATH	*-**	Pectinesterase 4	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf09401g02007.1	AT3G12120.1	***-	fatty acid desaturase 2 LENGTH=383	IPR005804 (Fatty acid desaturase, type 1)	GO:0006629 (lipid metabolic process)
Niben101Scf08047g00001.1	AT4G35240.1	***-	Protein of unknown function (DUF630 and DUF632) LENGTH=865	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf02069g02008.1	AT5G41790.1	*-*-	COP1-interactive protein 1 LENGTH=1586		
Niben101Scf17090g00002.1	gb|KHC73282.1|	*-*-	transformation/transcription domain-associated protein [Candida albicans SC5314]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf08167g05001.1	gb|ABA96375.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR008590 (Protein of unknown function DUF872, transmembrane)	
Niben101Scf03226g02007.1	sp|Q6P1E1|ZMIZ1_MOUSE	*-**	Zinc finger MIZ domain-containing protein 1	IPR004181 (Zinc finger, MIZ-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027229 (E3 SUMO protein ligase)	GO:0008270 (zinc ion binding), GO:0019789 (SUMO transferase activity)
Niben101Scf03077g00001.1	AT5G67320.1	***-	WD-40 repeat family protein LENGTH=613	IPR006594 (LisH dimerisation motif), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf08531g03002.1	sp|O49255|NAC29_ARATH	-***	NAC transcription factor 29	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00819g13002.1	AT3G05550.1	***-	Hypoxia-responsive family protein LENGTH=97	IPR007667 (Hypoxia induced protein, domain)	
Niben101Scf04875g06005.1	sp|Q9LZC5|GDL73_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00438g00015.1	sp|Q8F7R0|NUON_LEPIN	*-*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf03802g00018.1	sp|Q9FV02|SKIP3_ARATH	--*-	F-box protein SKIP3	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf08785g02012.1	sp|Q6AJW3|MSBA_DESPS	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf06628g00034.1	sp|P22928|CHSJ_PETHY	--*-	Chalcone synthase J		
Niben101Scf30239g00008.1	sp|Q11180|WHT1_CAEEL	****	ABC transporter ATP-binding protein/permease wht-1	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00337g04004.1	sp|Q9SAR1|MADS8_ORYSJ	****	MADS-box transcription factor 8	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Ctg11101g00001.1	ref|XP_003616972.1|	*-*-	LysM receptor kinase [Medicago truncatula]	IPR018392 (LysM domain)	
Niben101Scf03374g02005.1	sp|Q05085|PTR7_ARATH	***-	Protein NRT1/ PTR FAMILY 6.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf00182g06001.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf38003g00004.1	AT3G17950.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=211		
Niben101Scf07797g03005.1	sp|P23634|AT2B4_HUMAN	*-**	Plasma membrane calcium-transporting ATPase 4	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0016021 (integral component of membrane)
Niben101Scf09392g00016.1	sp|Q40554|EIF3A_TOBAC	*-**	Eukaryotic translation initiation factor 3 subunit A	IPR000717 (Proteasome component (PCI) domain), IPR027512 (Eukaryotic translation initiation factor 3 subunit A)	GO:0005515 (protein binding), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf01154g18011.1	AT3G59700.1	****	lectin-receptor kinase LENGTH=661	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf01661g02002.1	sp|A5VNL6|UREG1_BRUO2	--*-	Urease accessory protein UreG 1	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02632g01001.1	AT5G26110.1	****	Protein kinase superfamily protein LENGTH=226	IPR011009 (Protein kinase-like domain), IPR022495 (Serine/threonine-protein kinase Bud32)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11751g01004.1	emb|CDY04882.1|	--*-	BnaAnng00640D [Brassica napus]		
Niben101Scf09442g05005.1	AT1G20696.2	*-*-	high mobility group B3 LENGTH=147	IPR009071 (High mobility group box domain)	
Niben101Scf00863g01023.1	gb|AAU90304.1|	--*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf07183g00017.1	sp|P0CQ97|SUB2_CRYNB	*-*-	ATP-dependent RNA helicase SUB2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00884g00012.1	sp|O95684|FR1OP_HUMAN	*-*-	FGFR1 oncogene partner	IPR006594 (LisH dimerisation motif)	GO:0005515 (protein binding)
Niben101Scf06770g00018.1	sp|B9DSV3|RL2_STRU0	*-*-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10169g00004.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02227g06028.1	sp|Q6RZZ9|KIF13_DICDI	*-**	Kinesin-related protein 13	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf01155g01003.1	sp|Q86IZ4|IPP2_DICDI	--**	Protein phosphatase inhibitor 2	IPR007062 (Protein phosphatase inhibitor 2 (IPP-2))	GO:0004864 (protein phosphatase inhibitor activity), GO:0009966 (regulation of signal transduction), GO:0043666 (regulation of phosphoprotein phosphatase activity)
Niben101Scf06076g00025.1	sp|Q9SIF5|GDL32_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02514g01002.1	ref|XP_003623907.1|	***-	KDEL motif-containing protein [Medicago truncatula]	IPR006598 (Lipopolysaccharide-modifying protein)	
Niben101Scf01513g01009.1	sp|Q9ZVE0|ORN_ARATH	--*-	Oligoribonuclease		
Niben101Scf03109g02001.1			Unknown protein		
Niben101Scf12711g01009.1	sp|O81644|VILI2_ARATH	***-	Villin-2	IPR003128 (Villin headpiece), IPR007122 (Villin/Gelsolin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0007010 (cytoskeleton organization), GO:0051015 (actin filament binding), GO:0051017 (actin filament bundle assembly)
Niben101Scf03293g01006.1	sp|Q43291|RL211_ARATH	***-	60S ribosomal protein L21-1	IPR001147 (Ribosomal protein L21e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf14436g01007.1	sp|Q9LI83|ALA10_ARATH	*-**	Phospholipid-transporting ATPase 10	IPR006539 (P-type ATPase, subfamily IV), IPR023214 (HAD-like domain)	GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane)
Niben101Scf03164g07011.1	gb|AES64642.2|	*-*-	F-box protein interaction domain protein [Medicago truncatula]	IPR017451 (F-box associated interaction domain)	
Niben101Scf05425g00002.1	ref|XP_002518274.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF44034.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04988g01014.1	sp|G3X9R7|RN148_MOUSE	--*-	RING finger protein 148	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02074g03042.1	sp|P93311|RM02_ARATH	*-*-	60S ribosomal protein L2, mitochondrial		
Niben101Scf04639g12001.1	sp|Q9FJI1|KAD6_ARATH	*-**	Adenylate kinase isoenzyme 6 homolog	IPR020618 (Adenylate kinase isoenzyme 6), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004017 (adenylate kinase activity), GO:0005524 (ATP binding)
Niben101Scf00527g00006.1	emb|CDX74734.1|	***-	BnaA05g04800D [Brassica napus]	IPR009902 (Protein of unknown function DUF1442)	
Niben101Scf06564g00010.1	sp|Q9ZUH1|Y2424_ARATH	***-	BTB/POZ domain-containing protein	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf12290g00002.1	AT3G22260.2	*-*-	Cysteine proteinases superfamily protein LENGTH=245		
Niben101Scf10737g00015.1			Unknown protein		
Niben101Scf07778g00008.1			Unknown protein		
Niben101Scf02344g04010.1	AT2G13350.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=401	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf06570g00008.1	AT1G28310.2	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=325	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02049g03001.1	gb|ABD32938.2|	***-	Pathogen-related protein, related [Medicago truncatula]		
Niben101Scf02217g02019.1	ref|XP_007012205.1|	*-*-	Tetratricopeptide repeat-like superfamily protein isoform 2 [Theobroma cacao] gb|EOY29824.1| Tetratricopeptide repeat-like superfamily protein isoform 2 [Theobroma cacao]		
Niben101Scf01602g00007.1	AT1G67330.1	***-	Protein of unknown function (DUF579) LENGTH=291	IPR021148 (Putative polysaccharide biosynthesis protein)	
Niben101Scf01758g01012.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf06059g02009.1	sp|P0C6U8|R1A_CVHSA	--*-	Replicase polyprotein 1a		
Niben101Scf09447g00006.1	sp|P05100|3MG1_ECOLI	*-**	DNA-3-methyladenine glycosylase 1	IPR005019 (Methyladenine glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0008725 (DNA-3-methyladenine glycosylase activity)
Niben101Scf01065g02015.1	sp|Q9FYQ8|TMN11_ARATH	*-*-	Transmembrane 9 superfamily member 11	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf00530g06004.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf06862g01003.1	sp|A5G938|ISPD_GEOUR	***-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0003824 (catalytic activity), GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf03365g01010.1	sp|Q38831|IAA13_ARATH	***-	Auxin-responsive protein IAA13	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf03039g01013.1	gb|AFW90556.1|	***-	fiber protein Fb15 [Solanum tuberosum]		
Niben101Scf00991g13022.1	sp|Q9FN11|LBD37_ARATH	***-	LOB domain-containing protein 37	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf08537g01010.1	sp|Q11180|WHT1_CAEEL	****	ABC transporter ATP-binding protein/permease wht-1	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf02920g00020.1	ref|XP_007021365.1|	--*-	Nbs-lrr resistance protein [Theobroma cacao] gb|EOY12890.1| Nbs-lrr resistance protein [Theobroma cacao]		
Niben101Scf10065g01017.1			Unknown protein		
Niben101Scf00161g04002.1	ref|XP_002525675.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF36658.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf13429g03012.1	gb|AGL09494.1|	***-	NADH dehydrogenase 1 beta subcomplex subunit 8, partial [Thottea sp. JN-2013]		
Niben101Scf00163g13001.1	AT5G51150.1	***-	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein LENGTH=531		
Niben101Scf07325g00030.1	sp|Q9SD82|RFA1B_ARATH	****	Replication protein A 70 kDa DNA-binding subunit B	IPR004591 (Replication factor A protein 1)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0006310 (DNA recombination)
Niben101Scf00288g07011.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf14390g01011.1	AT5G05690.1	***-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf18822g00006.1	sp|Q43763|AGLU_HORVU	--*-	Alpha-glucosidase		
Niben101Scf01160g00009.1	sp|P12330|CB21_ORYSJ	*-*-	Chlorophyll a-b binding protein 1, chloroplastic	IPR001344 (Chlorophyll A-B binding protein, plant), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf02929g05041.1	gb|AIF76113.1|	****	cytochrome c biogenesis B, partial (mitochondrion) [Halodule pinifolia]	IPR003544 (Cytochrome c-type biogenesis protein CcmB)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf01658g02007.1	AT3G24570.1	****	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein LENGTH=235	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf05430g00010.1	emb|CDY26733.1|	***-	BnaA06g12890D [Brassica napus]	IPR008511 (Protein BYPASS-related)	
Niben101Scf03374g03008.1	sp|Q4R816|LDH6B_MACFA	****	L-lactate dehydrogenase A-like 6B	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0004459 (L-lactate dehydrogenase activity), GO:0005737 (cytoplasm), GO:0005975 (carbohydrate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf04500g03006.1	AT5G19473.1	***-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=99		
Niben101Scf01384g03020.1			Unknown protein		
Niben101Scf09264g00005.1	emb|CDY31527.1|	--*-	BnaA10g13440D [Brassica napus]		
Niben101Scf06408g04004.1	AT3G11340.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=447	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05619g00010.1	AT1G04140.2	***-	Transducin family protein / WD-40 repeat family protein LENGTH=793	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01042g02007.1	sp|Q86YB8|ERO1B_HUMAN	***-	ERO1-like protein beta	IPR007266 (Endoplasmic reticulum oxidoreductin 1)	GO:0003756 (protein disulfide isomerase activity), GO:0005783 (endoplasmic reticulum), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf02232g03001.1	sp|P52427|PSA4_SPIOL	****	Proteasome subunit alpha type-4	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf01209g04012.1	sp|P34103|PK4_DICDI	*-**	Protein kinase 4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf17417g00002.1	AT5G25570.3	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages. LENGTH=131		
Niben101Scf05437g00012.1	sp|Q7SXW3|LRC40_DANRE	*-*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf07713g00003.1	sp|P0C8G1|KTHY_ASFP4	*-**	Thymidylate kinase	IPR018094 (Thymidylate kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004798 (thymidylate kinase activity), GO:0005524 (ATP binding), GO:0006233 (dTDP biosynthetic process)
Niben101Scf04018g06007.1	sp|Q2JN82|PSBX_SYNJB	--**	Photosystem II reaction center X protein	IPR009518 (Photosystem II PsbX)	GO:0009523 (photosystem II), GO:0015979 (photosynthesis), GO:0016020 (membrane)
Niben101Scf07761g02006.1	sp|Q8LDC8|ERF92_ARATH	****	Ethylene-responsive transcription factor 1B	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00239g10012.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09987g03001.1	emb|CDY70616.1|	***-	BnaA03g54770D [Brassica napus]		
Niben101Scf06112g01008.1	AT5G66690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=481	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01214g02003.1	sp|Q2TBW5|ZNHI2_BOVIN	***-	Zinc finger HIT domain-containing protein 2	IPR007529 (Zinc finger, HIT-type)	
Niben101Scf09989g01029.1			Unknown protein		
Niben101Scf05737g00004.1	sp|Q22516|CHD3_CAEEL	*-**	Chromodomain-helicase-DNA-binding protein 3 homolog	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014905 (HIRAN domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf02207g11009.1	emb|CAC86897.1|	***-	allene oxide synthase [Medicago truncatula] gb|KEH40077.1| cytochrome P450 family fatty acid hydroperoxide lyase [Medicago truncatula]	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00085g06011.1	sp|Q9Y7Z2|ARF6_SCHPO	***-	ADP-ribosylation factor 6	IPR003579 (Small GTPase superfamily, Rab type), IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf07656g00004.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00914g00009.1	sp|A1SZY2|HLDE_PSYIN	*-*-	Bifunctional protein HldE	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process)
Niben101Scf09564g00010.1	sp|O65743|RL24_CICAR	***-	60S ribosomal protein L24	IPR000988 (Ribosomal protein L24e-related), IPR023441 (Ribosomal protein L24e domain), IPR023442 (Ribosomal protein L24e, conserved site)	
Niben101Scf01002g11006.1	sp|Q6NQG7|ATL78_ARATH	***-	RING-H2 finger protein ATL78		
Niben101Scf02426g02040.1	sp|Q8CGF7|TCRG1_MOUSE	*-*-	Transcription elongation regulator 1	IPR002713 (FF domain)	
Niben101Scf00807g01005.1	AT1G76020.1	*-*-	Thioredoxin superfamily protein LENGTH=225	IPR012336 (Thioredoxin-like fold)	
Niben101Scf00069g11019.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf00570g03010.1	ref|WP_011320066.1|	****	anion-transporting ATPase [Anabaena variabilis] ref|YP_323844.1| anion-transporting ATPase [Anabaena variabilis ATCC 29413] gb|ABA22949.1| arsenite efflux ATP-binding protein ArsA [Anabaena variabilis ATCC 29413]	IPR016300 (Arsenical pump ATPase, ArsA/GET3), IPR025723 (Anion-transporting ATPase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf07027g02001.1	sp|Q9SFU0|SC24A_ARATH	*-**	Protein transport protein Sec24-like	IPR002035 (von Willebrand factor, type A), IPR006895 (Zinc finger, Sec23/Sec24-type), IPR006896 (Sec23/Sec24, trunk domain)	GO:0006886 (intracellular protein transport), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0008270 (zinc ion binding), GO:0030127 (COPII vesicle coat)
Niben101Scf03289g00001.1	emb|CDY32382.1|	-**-	BnaA03g60680D [Brassica napus]	IPR007592 (Protein of unknown function DUF573)	
Niben101Scf10840g01016.1	sp|Q948U0|RBOHA_SOLTU	*-**	Respiratory burst oxidase homolog protein A	IPR013623 (NADPH oxidase Respiratory burst)	GO:0004601 (peroxidase activity), GO:0050664 (oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf23248g00015.1	ref|XP_002518781.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF43706.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf10847g00009.1	gb|AAS82859.1|	*-*-	geranyl diphosphate synthase small subunit [Antirrhinum majus]		
Niben101Scf01702g03005.1	sp|Q4QQW1|REEP4_RAT	*-*-	Receptor expression-enhancing protein 4	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf09409g01004.1	sp|Q9FZ70|FDL1_ARATH	*-*-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf11254g00010.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06332g02001.1	AT5G48150.1	***-	GRAS family transcription factor LENGTH=490	IPR005202 (Transcription factor GRAS)	
Niben101Ctg12906g00002.1	sp|Q9FUY2|LEUNG_ARATH	*-*-	Transcriptional corepressor LEUNIG	IPR006594 (LisH dimerisation motif)	GO:0005515 (protein binding)
Niben101Scf02576g00027.1	ref|XP_002523271.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF39110.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01384g03021.1	sp|Q9HAU5|RENT2_HUMAN	*-*-	Regulator of nonsense transcripts 2	IPR007193 (Up-frameshift suppressor 2), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf05323g01002.1	AT2G33830.2	***-	Dormancy/auxin associated family protein LENGTH=108	IPR008406 (Dormancyauxin associated)	
Niben101Scf18347g00023.1	gb|AFP90293.1|	--**	transcription factor 2 [Pinus densata]	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04473g11007.1			Unknown protein		
Niben101Scf00691g02027.1	sp|Q6D606|CCMA_PECAS	*-**	Cytochrome c biogenesis ATP-binding export protein CcmA	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf02737g03005.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf02476g03009.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02015g02011.1	sp|Q6NKW9|E138_ARATH	***-	Glucan endo-1,3-beta-glucosidase 8	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07829g00008.1	AT1G52630.1	***-	O-fucosyltransferase family protein LENGTH=439	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf07241g00013.1	AT2G46070.1	****	mitogen-activated protein kinase 12 LENGTH=372	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03734g02010.1			Unknown protein		
Niben101Scf04654g01005.1	ref|XP_007036061.1|	***-	ARM repeat superfamily protein, putative isoform 1 [Theobroma cacao] gb|EOY20562.1| ARM repeat superfamily protein, putative isoform 1 [Theobroma cacao]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf18182g00007.1	AT2G43500.1	***-	Plant regulator RWP-RK family protein LENGTH=947	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf01983g06011.1	AT1G78580.1	****	trehalose-6-phosphate synthase LENGTH=942	IPR001830 (Glycosyl transferase, family 20), IPR003337 (Trehalose-phosphatase), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process)
Niben101Scf21257g00018.1	sp|Q6ZLK0|OST48_ORYSJ	****	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	IPR005013 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1)	GO:0004579 (dolichyl-diphosphooligosaccharide-protein glycotransferase activity), GO:0005789 (endoplasmic reticulum membrane), GO:0018279 (protein N-linked glycosylation via asparagine)
Niben101Scf01211g04003.1	gb|KEH23596.1|	***-	fatty acid hydroxylase superfamily protein [Medicago truncatula]	IPR021940 (Uncharacterised domain Wax2, C-terminal)	
Niben101Scf04950g07019.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03536g01016.1	sp|P87319|VP13A_SCHPO	--*-	Vacuolar protein sorting-associated protein 13a	IPR009543 (Vacuolar protein sorting-associated protein 13 domain), IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf07340g00002.1	ref|XP_007048823.1|	--*-	BED zinc finger,hAT family dimerization domain [Theobroma cacao] gb|EOX92980.1| BED zinc finger,hAT family dimerization domain [Theobroma cacao]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf00817g04001.1	ref|XP_007051598.1|	****	NAD(P)-binding R , putative isoform 1 [Theobroma cacao]	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf08128g00014.1			Unknown protein		
Niben101Scf01383g02016.1			Unknown protein		
Niben101Scf03864g02010.1	AT2G18196.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=178	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf11767g01017.1	ref|NP_001185378.1|	*-*-	Di-gluc with Kinesin motor domain [Arabidopsis thaliana]		
Niben101Scf07007g01002.1	sp|O04478|GUN7_ARATH	--*-	Endoglucanase 7		
Niben101Scf00069g01002.1	sp|Q6NYA0|SRS1B_DANRE	***-	Serine/arginine-rich splicing factor 1B	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf29449g00001.1	sp|P14274|CB2A_SOLLC	*-*-	Chlorophyll a-b binding protein 1A, chloroplastic (Fragments)	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf07034g08029.1	sp|Q9SD34|C3H44_ARATH	*-**	Zinc finger CCCH domain-containing protein 44	IPR000571 (Zinc finger, CCCH-type), IPR003121 (SWIB/MDM2 domain), IPR003169 (GYF), IPR004343 (Plus-3), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006352 (DNA-templated transcription, initiation), GO:0008270 (zinc ion binding), GO:0016570 (histone modification), GO:0046872 (metal ion binding)
Niben101Scf09767g00002.1	sp|Q8RWI9|AB15G_ARATH	*-*-	ABC transporter G family member 15	IPR013525 (ABC-2 type transporter)	GO:0016020 (membrane)
Niben101Scf00215g08003.1	ref|XP_002512211.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF50245.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03747g02009.1	emb|CDY34463.1|	***-	BnaC01g21700D [Brassica napus]		
Niben101Scf05582g01009.1	sp|Q9X248|FABG_THEMA	*-*-	3-oxoacyl-[acyl-carrier-protein] reductase FabG	IPR002347 (Glucose/ribitol dehydrogenase)	
Niben101Scf02930g00008.1	sp|Q75HV0|CCP31_ORYSJ	****	Cyclin-P3-1	IPR013763 (Cyclin-like), IPR013922 (Cyclin PHO80-like)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0019901 (protein kinase binding)
Niben101Scf01071g00001.1	gb|ACG26001.1|	***-	COV1-like protein [Zea mays]	IPR007462 (Protein of unknown function DUF502)	
Niben101Scf02074g03043.1	gb|ACZ52183.1|	***-	ribosomal protein L10 (mitochondrion) [Digitalis purpurea]		
Niben101Scf05300g01001.1	sp|Q54UC9|KIF3_DICDI	*-**	Kinesin-related protein 3	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00629g00001.1	AT5G19855.1	***-	Chaperonin-like RbcX protein LENGTH=203	IPR003435 (Chaperonin-like RbcX)	
Niben101Scf05437g06001.1	sp|Q09221|CPNA2_CAEEL	*-*-	Copine family protein 2	IPR002035 (von Willebrand factor, type A), IPR010734 (Copine)	
Niben101Scf01876g01023.1	sp|A8XPH5|WDR4_CAEBR	*-**	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR028884 (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit, Trm82)	GO:0005515 (protein binding), GO:0036265 (RNA (guanine-N7)-methylation)
Niben101Scf03515g00073.1	sp|Q2IWY2|NUOD_RHOP2	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02606g05027.1	sp|Q6NPT8|PP2B1_ARATH	***-	F-box protein PP2-B1	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf04926g04019.1	sp|Q40089|ATP4_IPOBA	*-*-	ATP synthase subunit delta', mitochondrial		
Niben101Scf01866g05005.1	emb|CDY04581.1|	***-	BnaA07g14070D [Brassica napus]	IPR012862 (Protein of unknown function DUF1635)	
Niben101Scf02853g00001.1	sp|Q84MA8|AZG2_ARATH	--*-	Adenine/guanine permease AZG2		
Niben101Scf00594g02002.1	sp|Q43011|ASNS2_ORYSJ	*-*-	Asparagine synthetase [glutamine-hydrolyzing] 2	IPR024286 (Domain of unknown function DUF3700), IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf02594g07001.1	AT1G35180.1	***-	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein LENGTH=231	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf03969g03001.1	sp|O65729|RL18_CICAR	*-*-	60S ribosomal protein L18	IPR000039 (Ribosomal protein L18e), IPR021131 (Ribosomal protein L18e/L15P)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06556g07017.1	sp|Q6IE26|EPHX4_MOUSE	*-*-	Epoxide hydrolase 4	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf16764g00007.1	AT3G10560.1	***-	Cytochrome P450 superfamily protein LENGTH=514	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10054g00005.1			Unknown protein		
Niben101Scf01520g03004.1	sp|Q9FF52|RL123_ARATH	*-*-	60S ribosomal protein L12-3	IPR000911 (Ribosomal protein L11/L12)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04776g01010.1	sp|Q9LUG9|MD33A_ARATH	*-*-	Mediator of RNA polymerase II transcription subunit 33A		
Niben101Scf00853g00001.1	sp|Q8VWK4|TRB1_ARATH	****	Telomere repeat-binding factor 1	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf10757g00001.1	sp|Q6ZKC0|14333_ORYSJ	***-	14-3-3-like protein GF14-C	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf08422g00003.1	AT2G33830.2	***-	Dormancy/auxin associated family protein LENGTH=108	IPR008406 (Dormancyauxin associated)	
Niben101Scf08998g02001.1	emb|CDX99035.1|	***-	BnaC09g48000D [Brassica napus]		
Niben101Scf00254g02007.1	AT2G46070.1	****	mitogen-activated protein kinase 12 LENGTH=372	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10055g04006.1	AT4G19420.1	***-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf05030g01007.1	sp|P52855|RLA1_MAIZE	***-	60S acidic ribosomal protein P1	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf05855g06014.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07183g00016.1	sp|A6R603|SUB2_AJECN	****	ATP-dependent RNA helicase SUB2	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf05381g00008.1	sp|Q9MA49|JAL2_ARATH	***-	Jacalin-related lectin 2	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf01563g02004.1	sp|Q7Z2Q7|LRR70_HUMAN	--*-	Leucine-rich repeat-containing protein 70		
Niben101Scf20324g00010.1	AT2G36290.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=364	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00635g04004.1	sp|P52738|ZN140_HUMAN	--*-	Zinc finger protein 140	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf09729g00026.1	sp|Q9LE73|NUDT4_ARATH	*-**	Nudix hydrolase 4	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf01202g00008.1	ref|YP_004927590.1|	***-	orf101b (mitochondrion) [Brassica carinata] gb|AEH43605.1| orf101b [Brassica carinata]		
Niben101Scf03488g08008.1	AT3G18670.1	*-*-	Ankyrin repeat family protein LENGTH=598	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	GO:0005515 (protein binding)
Niben101Scf04223g01031.1	sp|Q84TH6|DIR23_ARATH	***-	Dirigent protein 23	IPR004265 (Plant disease resistance response protein)	
Niben101Scf15327g00001.1	sp|Q9SRE7|CML39_ARATH	****	Calcium-binding protein CML39	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf05881g01009.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf12651g00003.1	AT5G25840.1	***-	Protein of unknown function (DUF1677) LENGTH=173	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf09584g00041.1	ref|XP_002511849.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF50518.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03528g00005.1	gb|EMT31861.1|	****	IAA-amino acid hydrolase ILR1-like protein 8 [Aegilops tauschii]	IPR002933 (Peptidase M20)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf06914g00005.1	ref|XP_002869709.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH45968.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf01563g01004.1	emb|CDY41166.1|	*-*-	BnaA09g38490D [Brassica napus]	IPR012438 (Protein of unknown function DUF1639)	
Niben101Scf08724g02010.1	sp|P51846|PDC2_TOBAC	*-*-	Pyruvate decarboxylase 2	IPR011766 (Thiamine pyrophosphate enzyme, C-terminal TPP-binding), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0030976 (thiamine pyrophosphate binding)
Niben101Scf01862g00005.1	AT2G01610.1	*-**	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=222	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf02104g01010.1	AT3G23820.1	****	UDP-D-glucuronate 4-epimerase 6 LENGTH=460	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf00944g00006.1	sp|Q42608|PME_BRACM	--**	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf06769g03008.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf07191g02024.1	AT5G08240.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=258		
Niben101Scf03018g09011.1	sp|Q8L709|CHX28_ARATH	****	Cation/H(+) antiporter 28	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01143g03009.1	sp|Q27RY7|YCF2_SOLTU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf04738g05011.1	AT5G04870.1	****	calcium dependent protein kinase 1 LENGTH=610	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00811g04002.1	AT1G05020.1	*-*-	ENTH/ANTH/VHS superfamily protein LENGTH=653	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf06951g00004.1	sp|O80337|EF100_ARATH	*-**	Ethylene-responsive transcription factor 1A	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07459g00016.1	AT3G61050.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=510	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf10940g06011.1	AT2G26150.1	****	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02947g01002.1			Unknown protein		
Niben101Scf00509g03009.1	AT5G60520.1	***-	Late embryogenesis abundant (LEA) protein-related LENGTH=338	IPR009646 (Root cap)	
Niben101Scf04091g00003.1			Unknown protein		
Niben101Scf04113g06003.1			Unknown protein		
Niben101Scf10330g02003.1	sp|Q9M342|WAKLP_ARATH	*-*-	Wall-associated receptor kinase-like 15	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf13684g00002.1	emb|CDY19340.1|	***-	BnaC05g08490D [Brassica napus]		
Niben101Scf06779g01001.1	gb|KEH37797.1|	***-	F-box/RNI/FBD-like domain protein [Medicago truncatula]		
Niben101Scf08321g03004.1	sp|Q84JH9|TBL25_ARATH	***-	Protein trichome birefringence-like 25	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf07798g03026.1	AT1G72450.1	*-*-	jasmonate-zim-domain protein 6 LENGTH=269	IPR010399 (Tify)	
Niben101Scf02411g00017.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf03412g05020.1	AT5G05470.1	****	eukaryotic translation initiation factor 2 alpha subunit LENGTH=344	IPR011488 (Translation initiation factor 2, alpha subunit), IPR012340 (Nucleic acid-binding, OB-fold), IPR024054 (Translation initiation factor 2, alpha subunit, middle domain), IPR024055 (Translation initiation factor 2, alpha subunit, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005850 (eukaryotic translation initiation factor 2 complex)
Niben101Scf04998g00005.1			Unknown protein		
Niben101Scf02891g04008.1	sp|A6GZF3|SYP_FLAPJ	****	Proline--tRNA ligase	IPR002316 (Proline-tRNA ligase, class IIa), IPR017449 (Prolyl-tRNA synthetase, class II)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004827 (proline-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006433 (prolyl-tRNA aminoacylation)
Niben101Scf01131g00004.1	AT5G67385.1	***-	Phototropic-responsive NPH3 family protein LENGTH=604	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Ctg12759g00001.1	ref|XP_002318548.1|	*-*-	hydroxyproline-rich glycoprotein [Populus trichocarpa] gb|EEE96768.1| hydroxyproline-rich glycoprotein [Populus trichocarpa]		
Niben101Scf00474g01014.1	gb|KEH44157.1|	*-*-	ATP-dependent RNA helicase DHX36-like protein [Medicago truncatula]		
Niben101Scf10103g00003.1	sp|Q9SCU9|BGA13_ARATH	*-*-	Beta-galactosidase 13	IPR008979 (Galactose-binding domain-like)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02279g04004.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00361g01004.1	sp|B1NWJ1|RK2_MANES	*-**	50S ribosomal protein L2, chloroplastic	IPR002171 (Ribosomal protein L2), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit), GO:0016740 (transferase activity)
Niben101Scf20576g01002.1	sp|Q110B5|RL29_TRIEI	--*-	50S ribosomal protein L29	IPR001854 (Ribosomal protein L29)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf12017g01001.1			Unknown protein		
Niben101Scf09792g03021.1	AT2G38940.1	*-*-	phosphate transporter 1;4 LENGTH=534		
Niben101Scf12148g01008.1	sp|Q9C8T7|PP101_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01375g05005.1	sp|Q9FUY2|LEUNG_ARATH	--*-	Transcriptional corepressor LEUNIG	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05822g01003.1	gb|AGW82761.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia calycina]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf12919g00023.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04574g04001.1	ref|XP_002533956.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF28425.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02907g06016.1	sp|P42327|ADH2_GEOSE	***-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01774g04006.1	AT1G59520.3	***-	CW7 LENGTH=388	IPR019141 (Protein of unknown function DUF2045)	
Niben101Scf15723g00003.1	emb|CAM12540.1|	*-*-	YA2 [Antirrhinum majus]		
Niben101Scf03747g04018.1	sp|Q7N8S4|ARGA_PHOLL	*-**	Amino-acid acetyltransferase	IPR010167 (Amino-acid N-acetyltransferase (ArgA)), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0004042 (acetyl-CoA:L-glutamate N-acetyltransferase activity), GO:0005737 (cytoplasm), GO:0006526 (arginine biosynthetic process), GO:0008080 (N-acetyltransferase activity)
Niben101Scf10041g00022.1	sp|Q9LRE6|DPOD1_ORYSJ	*-**	DNA polymerase delta catalytic subunit	IPR006134 (DNA-directed DNA polymerase, family B, multifunctional domain), IPR025687 (C4-type zinc-finger of DNA polymerase delta)	GO:0000166 (nucleotide binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity)
Niben101Scf04829g02003.1	sp|Q38857|XTH22_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR008264 (Beta-glucanase), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02073g01012.1	sp|Q9FZ03|MAN2_SOLLC	***-	Mannan endo-1,4-beta-mannosidase 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08679g02006.1	AT5G19860.1	***-	Protein of unknown function, DUF538 LENGTH=181	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf00755g01003.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04582g03004.1	sp|Q67IX6|PDI14_ORYSJ	***-	Protein disulfide isomerase-like 1-4	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf02077g00013.1			Unknown protein		
Niben101Scf09811g00001.1	sp|Q9SF15|PUB24_ARATH	--*-	E3 ubiquitin-protein ligase PUB24		
Niben101Scf08121g02006.1	sp|Q27975|HS71A_BOVIN	*-*-	Heat shock 70 kDa protein 1A	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf03164g03009.1	sp|Q5SUS0|FBW10_MOUSE	--*-	F-box/WD repeat-containing protein 10	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02128g00015.1	sp|P85107|TGS1_RAT	*-*-	Trimethylguanosine synthase	IPR019012 (RNA cap guanine-N2 methyltransferase)	GO:0001510 (RNA methylation), GO:0008168 (methyltransferase activity), GO:0009452 (7-methylguanosine RNA capping)
Niben101Scf00870g15026.1	AT3G14010.1	***-	CTC-interacting domain 4 LENGTH=595	IPR009604 (LsmAD domain), IPR025852 (Ataxin 2, SM domain)	
Niben101Scf07586g02007.1	sp|Q9C9Z5|NDUA1_ARATH	***-	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1	IPR017384 (NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex subunit 1)	
Niben101Scf02085g26002.1	ref|NP_001150011.1|	***-	sap [Zea mays]	IPR011001 (Saposin-like)	GO:0006629 (lipid metabolic process)
Niben101Scf03444g04022.1	sp|P81394|MYB15_ANTMA	***-	Myb-related protein 315	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03398g06003.1	ref|XP_007052616.1|	*-*-	Hydroxyproline-rich glycoprotein family protein, putative isoform 2 [Theobroma cacao] gb|EOX96773.1| Hydroxyproline-rich glycoprotein family protein, putative isoform 2 [Theobroma cacao]	IPR028226 (Protein LIN37)	GO:0007049 (cell cycle), GO:0017053 (transcriptional repressor complex)
Niben101Scf01061g04027.1	AT1G30760.1	****	FAD-binding Berberine family protein LENGTH=534	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00239g07008.1			Unknown protein		
Niben101Scf05487g01007.1			Unknown protein		
Niben101Scf31228g00008.1	sp|Q1MIK4|NUOK_RHIL3	****	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf03289g01006.1	AT5G36670.1	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=1193	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00111g04004.1	sp|Q7T0Q5|NOL10_XENLA	***-	Nucleolar protein 10	IPR012580 (NUC153), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf02792g03029.1	sp|Q9SE45|ANXD3_ARATH	***-	Annexin D3	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf04393g00002.1	sp|Q54VM3|TBC5A_DICDI	*-*-	TBC1 domain family member 5 homolog A	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf21557g01031.1	sp|P0DI74|S61G1_ARATH	****	Protein transport protein Sec61 subunit gamma-1	IPR001901 (Protein translocase complex, SecE/Sec61-gamma subunit), IPR023391 (Protein translocase SecE domain)	GO:0006605 (protein targeting), GO:0006886 (intracellular protein transport), GO:0015031 (protein transport), GO:0015450 (P-P-bond-hydrolysis-driven protein transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf09248g07004.1	sp|Q8LIG4|CIPK3_ORYSJ	****	CBL-interacting protein kinase 3	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12160g01023.1	sp|Q5L0K0|PYRH_GEOKA	****	Uridylate kinase	IPR001048 (Aspartate/glutamate/uridylate kinase), IPR015963 (Uridylate kinase, bacteria)	GO:0005737 (cytoplasm), GO:0006221 (pyrimidine nucleotide biosynthetic process), GO:0033862 (UMP kinase activity)
Niben101Scf01827g02003.1	sp|Q570B4|KCS10_ARATH	***-	3-ketoacyl-CoA synthase 10	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02383g01005.1	sp|O04203|HSPR2_ARATH	*-*-	Nematode resistance protein-like HSPRO2	IPR009869 (Hs1pro-1, N-terminal)	
Niben101Scf01823g02013.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04434g00026.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC)	GO:0043531 (ADP binding)
Niben101Scf01382g03012.1	sp|Q9M1V3|PP296_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01350g07008.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09284g01002.1	AT1G56500.1	*-**	haloacid dehalogenase-like hydrolase family protein LENGTH=1055	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01689g08004.1	sp|P06290|ATPF_TOBAC	*-*-	ATP synthase subunit b, chloroplastic		
Niben101Scf14022g01008.1	sp|Q8L8A6|GRF5_ARATH	*-*-	Growth-regulating factor 5	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf04240g02012.1	tpg|DAA60452.1|	***-	TPA: hypothetical protein ZEAMMB73_929947 [Zea mays]		
Niben101Scf09670g02010.1	sp|Q8VZU2|SY132_ARATH	***-	Syntaxin-132	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf23998g01014.1	sp|Q54RB2|CDK11_DICDI	*-**	Cyclin-dependent kinase 11	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13757g00004.1			Unknown protein		
Niben101Scf00402g01007.1	sp|Q2KIP2|HASP_BOVIN	*-*-	Serine/threonine-protein kinase haspin	IPR011009 (Protein kinase-like domain), IPR024604 (Domain of unknown function DUF3635)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01109g04010.1	AT4G14605.1	*-**	Mitochondrial transcription termination factor family protein LENGTH=493	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02348g13008.1	sp|Q3UDK1|TRAD1_MOUSE	*-**	TRAF-type zinc finger domain-containing protein 1	IPR001293 (Zinc finger, TRAF-type)	GO:0008270 (zinc ion binding)
Niben101Scf04523g00009.1	sp|A6QRA1|NRPE7_ARATH	*-**	DNA-directed RNA polymerase V subunit 7	IPR005576 (RNA polymerase Rpb7, N-terminal)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf05912g02024.1	sp|Q93Y09|SCP45_ARATH	****	Serine carboxypeptidase-like 45	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03476g01002.1	gb|KEH37506.1|	***-	integral membrane protein [Medicago truncatula]	IPR021261 (Protein of unknown function DUF2838)	
Niben101Scf01745g07021.1	sp|Q9C9H7|RLP12_ARATH	*-*-	Receptor-like protein 12	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00270g11005.1	sp|Q568H3|MD2L2_DANRE	***-	Mitotic spindle assembly checkpoint protein MAD2B	IPR003511 (DNA-binding HORMA)	
Niben101Scf07724g00005.1	sp|Q9C6I8|NOG1_ARATH	***-	Nucleolar GTP-binding protein 1	IPR012973 (NOG, C-terminal)	
Niben101Scf05612g01003.1			Unknown protein		
Niben101Scf03279g03027.1	AT1G03050.1	***-	ENTH/ANTH/VHS superfamily protein LENGTH=599	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf10144g01001.1	sp|Q197W8|TANA_ARATH	***-	Microtubule-binding protein TANGLED		
Niben101Scf08443g00019.1	sp|Q9C5E5|DGK5_ARATH	****	Diacylglycerol kinase 5	IPR000756 (Diacylglycerol kinase, accessory domain), IPR001206 (Diacylglycerol kinase, catalytic domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf05676g06006.1	sp|A6X1X8|FABH_OCHA4	*-*-	3-oxoacyl-[acyl-carrier-protein] synthase 3	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf31976g00008.1	AT1G08760.1	***-	Plant protein of unknown function (DUF936) LENGTH=748	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Scf06357g00012.1	AT4G38380.1	***-	MATE efflux family protein LENGTH=560	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00983g06002.1	tpg|DAA52051.1|	***-	TPA: hypothetical protein ZEAMMB73_362192 [Zea mays]	IPR012438 (Protein of unknown function DUF1639)	
Niben101Ctg14126g00004.1			Unknown protein		
Niben101Scf08792g00006.1	sp|Q8L9S1|R18AL_ARATH	***-	60S ribosomal protein L18a-like protein		
Niben101Scf35737g00004.1	AT1G04430.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=623	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf08376g00005.1	AT1G75180.1	***-	Erythronate-4-phosphate dehydrogenase family protein LENGTH=315		
Niben101Scf14144g00027.1	sp|Q9FYQ8|TMN11_ARATH	***-	Transmembrane 9 superfamily member 11	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf04663g05019.1	sp|Q641M3|TMM18_DANRE	***-	Transmembrane protein 18	IPR026721 (Transmembrane protein 18)	
Niben101Scf10322g01011.1	sp|Q41932|PSBQ2_ARATH	*-**	Oxygen-evolving enhancer protein 3-2, chloroplastic	IPR008797 (Photosystem II PsbQ, oxygen evolving complex), IPR023222 (PsbQ-like domain)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf10718g00002.1	sp|Q9LX73|UFL1_ARATH	*-*-	E3 UFM1-protein ligase 1 homolog		
Niben101Scf05166g01022.1	sp|Q9FLT8|AB12A_ARATH	****	ABC transporter A family member 12	IPR026082 (ABC transporter A, ABCA)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf16108g00004.1	AT1G22650.1	***-	Plant neutral invertase family protein LENGTH=534	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf00318g09008.1	sp|Q06RE1|RPOC2_JASNU	*-**	DNA-directed RNA polymerase subunit beta''	IPR007081 (RNA polymerase Rpb1, domain 5)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf06081g03022.1	sp|Q9ZQW8|U2AFA_ORYSJ	*-*-	Splicing factor U2af small subunit A	IPR009145 (U2 auxiliary factor small subunit), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0046872 (metal ion binding)
Niben101Scf04279g03005.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf02949g09007.1	AT1G67785.1	***-	unknown protein; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=63		
Niben101Scf00271g07004.1	sp|Q9SPE5|SNAG_ARATH	***-	Gamma-soluble NSF attachment protein	IPR000744 (NSF attachment protein)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport)
Niben101Scf00149g07003.1	sp|P09443|LE19_GOSHI	***-	Late embryogenesis abundant protein D-19	IPR000389 (Stress induced protein)	
Niben101Scf00959g00012.1	sp|Q9SW07|GDU2_ARATH	-**-	Protein GLUTAMINE DUMPER 2		
Niben101Scf01489g01038.1			Unknown protein		
Niben101Scf03595g05002.1			Unknown protein		
Niben101Scf09955g00003.1	gb|AES91579.2|	*-*-	structural maintenance-like chromosomes-protein [Medicago truncatula]		
Niben101Scf25094g00003.1	AT5G43360.1	*-**	phosphate transporter 1;3 LENGTH=521	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03486g01014.1	ref|XP_002872926.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH49185.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf01734g01038.1	AT2G43280.1	***-	Far-red impaired responsive (FAR1) family protein LENGTH=206	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf10015g09023.1	AT1G07730.2	*-*-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=389	IPR004265 (Plant disease resistance response protein)	
Niben101Scf18172g01012.1	gb|AES72538.2|	****	RNA-binding protein with multiple splicing protein [Medicago truncatula]	IPR024888 (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'')	GO:0000398 (mRNA splicing, via spliceosome), GO:0017069 (snRNA binding)
Niben101Scf00728g00007.1	ref|NP_001149735.1|	*-*-	AAA ATPase containing von Willebrand factor type A precursor [Zea mays] gb|ACG36602.1| AAA ATPase containing von Willebrand factor type A [Zea mays]	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf17688g00024.1	sp|Q5R831|S35B3_PONAB	***-	Adenosine 3'-phospho 5'-phosphosulfate transporter 2	IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf02852g03022.1	sp|Q52KW0|SHAN2_XENLA	--*-	SH3 and multiple ankyrin repeat domains protein 2	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf03284g07001.1	sp|Q10E50|PLA23_ORYSJ	****	Phospholipase A2 homolog 3	IPR001211 (Phospholipase A2), IPR016090 (Phospholipase A2 domain)	GO:0004623 (phospholipase A2 activity), GO:0005509 (calcium ion binding), GO:0006644 (phospholipid metabolic process), GO:0016042 (lipid catabolic process)
Niben101Scf23800g00001.1	AT1G76640.1	****	Calcium-binding EF-hand family protein LENGTH=159	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf11386g00002.1	sp|Q9SIT9|NFYB7_ARATH	*-**	Nuclear transcription factor Y subunit B-7	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf03861g02015.1	sp|Q5M786|WDR5_XENTR	***-	WD repeat-containing protein 5	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00128g05001.1	sp|Q9VR59|VIP1_DROME	*-*-	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase	IPR029033 (Histidine phosphatase superfamily)	GO:0003993 (acid phosphatase activity)
Niben101Scf04995g05001.1	sp|Q2KIG2|WDR5_BOVIN	*-*-	WD repeat-containing protein 5	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf12293g02031.1	sp|B0CB70|GLPK_ACAM1	--*-	Glycerol kinase	IPR018484 (Carbohydrate kinase, FGGY, N-terminal), IPR018485 (Carbohydrate kinase, FGGY, C-terminal)	GO:0005975 (carbohydrate metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf04018g13006.1	sp|Q0UU86|IF4A_PHANO	*-**	ATP-dependent RNA helicase eIF4A	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf22894g00001.1	AT1G29840.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=263	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00272g03001.1			Unknown protein		
Niben101Scf10492g00001.1	sp|O49377|VA711_ARATH	****	Vesicle-associated membrane protein 711	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf09209g03010.1	ref|XP_002533928.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF28457.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01063g09001.1	AT4G13050.1	***-	Acyl-ACP thioesterase LENGTH=367	IPR002864 (Acyl-ACP thioesterase), IPR029069 (HotDog domain)	GO:0006633 (fatty acid biosynthetic process), GO:0016790 (thiolester hydrolase activity)
Niben101Scf07488g00006.1	sp|Q9M0G7|PXL2_ARATH	--*-	Leucine-rich repeat receptor-like protein kinase PXL2	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf04663g05018.1	sp|P18212|PSBP2_TOBAC	--**	Oxygen-evolving enhancer protein 2-2, chloroplastic	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf00064g00014.1	AT4G33840.1	*-**	Glycosyl hydrolase family 10 protein LENGTH=576	IPR001000 (Glycoside hydrolase, family 10), IPR008979 (Galactose-binding domain-like), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00315g03009.1	sp|P48392|CHS3_GERHY	***-	Chalcone synthase 3	IPR011141 (Polyketide synthase, type III), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0009058 (biosynthetic process), GO:0016746 (transferase activity, transferring acyl groups), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf07841g02013.1	gb|AES73034.2|	*-*-	tapetum determinant protein [Medicago truncatula]		
Niben101Scf03202g13015.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02688g04011.1			Unknown protein		
Niben101Scf06357g00011.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR006086 (XPG-I domain), IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR011009 (Protein kinase-like domain), IPR029060 (PIN domain-like)	GO:0004518 (nuclease activity), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05582g04014.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf02929g04088.1	AT4G34860.1	*-*-	Plant neutral invertase family protein LENGTH=571	IPR024746 (Glycosyl hydrolase family 100)	GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf01005g04004.1	ref|WP_014243176.1|	****	2-oxoglutarate translocator [Bacteriovorax marinus] ref|YP_005034360.1| putative membrane transport protein [Bacteriovorax marinus SJ] emb|CBW25389.1| putative membrane transport protein [Bacteriovorax marinus SJ]	IPR001898 (Sodium/sulphate symporter)	GO:0005215 (transporter activity), GO:0006814 (sodium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf04396g02018.1	sp|Q9LUJ2|PP249_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01673g05001.1	sp|A0RXV1|PSB2_CENSY	*-**	Proteasome subunit beta 2	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf02307g01008.1	gb|KEH43835.1|	***-	PPR superfamily protein [Medicago truncatula]	IPR029159 (Casein Kinase 2 substrate)	
Niben101Scf00705g05011.1	sp|Q9SVL0|ZHD7_ARATH	***-	Zinc-finger homeodomain protein 7	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf08179g02014.1	sp|P55258|RAB8A_MOUSE	***-	Ras-related protein Rab-8A	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf01782g00014.1	sp|Q8GWK7|BEE3_ARATH	--*-	Transcription factor BEE 3		
Niben101Scf03326g05010.1	sp|Q9FFG8|PP417_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02537g01007.1	AT1G78310.1	*-*-	VQ motif-containing protein LENGTH=311	IPR008889 (VQ)	
Niben101Ctg02134g00002.1	ref|NP_001077679.1|	--*-	protein kinase [Arabidopsis thaliana] gb|AEE32086.1| protein kinase [Arabidopsis thaliana]		
Niben101Scf04294g01013.1	sp|Q9FIL7|CRCK1_ARATH	--**	Calmodulin-binding receptor-like cytoplasmic kinase 1	IPR001368 (TNFR/NGFR cysteine-rich region), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005515 (protein binding)
Niben101Scf00607g03013.1	sp|P27496|CB25_TOBAC	***-	Chlorophyll a-b binding protein 50, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf05950g00006.1	AT5G43260.1	***-	chaperone protein dnaJ-related LENGTH=97	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf08947g01011.1	ref|XP_002515340.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46789.1| conserved hypothetical protein [Ricinus communis]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf04327g02015.1	sp|P17742|PPIA_MOUSE	****	Peptidyl-prolyl cis-trans isomerase A	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf06751g00001.1	AT1G64600.1	*-**	methyltransferases;copper ion binding LENGTH=537	IPR007533 (Cytochrome c oxidase assembly protein CtaG/Cox11), IPR015324 (Ribosomal protein Rsm22, bacterial-type)	GO:0005507 (copper ion binding), GO:0006412 (translation), GO:0008168 (methyltransferase activity)
Niben101Scf08758g02003.1	sp|Q61382|TRAF4_MOUSE	*-*-	TNF receptor-associated factor 4	IPR008974 (TRAF-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027138 (TNF receptor-associated factor 4)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0007250 (activation of NF-kappaB-inducing kinase activity), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination), GO:0046330 (positive regulation of JNK cascade)
Niben101Scf09860g00012.1	sp|Q8TSA6|PYRC_METAC	***-	Dihydroorotase	IPR011778 (Hydantoinase/dihydropyrimidinase)	GO:0005737 (cytoplasm), GO:0006208 (pyrimidine nucleobase catabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds), GO:0016812 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides)
Niben101Scf03924g00006.1	sp|Q31PU2|MINE_SYNE7	--**	Cell division topological specificity factor	IPR005527 (Septum formation topological specificity factor MinE)	GO:0032955 (regulation of barrier septum assembly), GO:0051301 (cell division)
Niben101Scf03422g01011.1	emb|CDX97730.1|	***-	BnaA05g23490D [Brassica napus]		
Niben101Scf06976g05003.1	sp|Q89K67|MNTH_BRADU	****	Divalent metal cation transporter MntH	IPR001046 (NRAMP family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03104g03021.1	sp|C0LU16|MED21_ARATH	***-	Mediator of RNA polymerase II transcription subunit 21	IPR021384 (Mediator complex, subunit Med21)	
Niben101Scf01208g03012.1	ref|XP_007035984.1|	*-**	HAT dimerization domain-containing protein [Theobroma cacao] gb|EOY06910.1| HAT dimerization domain-containing protein [Theobroma cacao]	IPR008906 (HAT dimerisation domain, C-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0046983 (protein dimerization activity)
Niben101Scf10126g00014.1	gb|AES87033.2|	***-	DUF674 family protein [Medicago truncatula]	IPR007750 (Protein of unknown function DUF674)	
Niben101Ctg04408g00002.1			Unknown protein		
Niben101Scf07147g01006.1	sp|Q14498|RBM39_HUMAN	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00679g01009.1	emb|CDY49520.1|	*-*-	BnaC05g03320D [Brassica napus]	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf00981g03006.1			Unknown protein		
Niben101Scf02394g00001.1	sp|Q6N069|NAA16_HUMAN	***-	N-alpha-acetyltransferase 16, NatA auxiliary subunit	IPR021183 (N-terminal acetyltransferase A, auxiliary subunit)	GO:0005515 (protein binding)
Niben101Scf08011g00013.1	sp|Q9ZPS7|TMN3_ARATH	***-	Transmembrane 9 superfamily member 3	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf27377g00004.1			Unknown protein		
Niben101Scf02554g00006.1	sp|Q8LPL2|PTR32_ARATH	***-	Protein NRT1/ PTR FAMILY 1.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf07977g02007.1	sp|Q949Z1|PGLR4_ARATH	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02541g10025.1	AT1G30860.1	*-*-	RING/U-box superfamily protein LENGTH=730		
Niben101Scf10232g03012.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02159g01012.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf02532g01009.1	sp|Q9C7C1|TET6_ARATH	***-	Tetraspanin-6	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf03142g04006.1	AT4G29920.1	***-	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein LENGTH=1017	IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf07035g06001.1	emb|CDY47923.1|	--*-	BnaAnng09550D [Brassica napus]		
Niben101Ctg14743g00003.1	sp|O09175|AMPB_RAT	***-	Aminopeptidase B	IPR001930 (Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity), GO:0008270 (zinc ion binding), GO:0019370 (leukotriene biosynthetic process)
Niben101Scf08833g03007.1	emb|CDY20392.1|	*-*-	BnaC02g24240D [Brassica napus]	IPR008978 (HSP20-like chaperone)	
Niben101Scf13150g04023.1	AT1G34760.1	***-	general regulatory factor 11 LENGTH=255	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf05898g00003.1	sp|Q84W80|FBL42_ARATH	*-*-	F-box/LRR-repeat protein		
Niben101Scf03087g00005.1			Unknown protein		
Niben101Scf03488g07001.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf03766g15008.1	sp|Q08237|REXO4_YEAST	*-**	RNA exonuclease 4	IPR007087 (Zinc finger, C2H2), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity), GO:0046872 (metal ion binding)
Niben101Scf04132g03006.1	AT2G26130.1	*-**	RING/U-box protein with C6HC-type zinc finger LENGTH=398	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03494g12001.1	sp|Q9JLH7|CK5P3_RAT	***-	CDK5 regulatory subunit-associated protein 3	IPR008491 (Protein of unknown function DUF773)	
Niben101Scf01933g13008.1			Unknown protein		
Niben101Scf04903g01014.1	gb|EMS67775.1|	--*-	Serine/threonine-protein kinase AtPK2/AtPK19 [Triticum urartu]		
Niben101Scf02543g02014.1	AT1G65560.1	*-**	Zinc-binding dehydrogenase family protein LENGTH=350	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10322g00007.1	AT1G14180.1	***-	RING/U-box superfamily protein LENGTH=348	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02305g01018.1	AT1G65790.1	****	receptor kinase 1 LENGTH=843	IPR000858 (S-locus glycoprotein), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf00282g03028.1	AT5G52110.1	***-	Protein of unknown function (DUF2930) LENGTH=275	IPR021325 (Protein of unknown function DUF2930)	
Niben101Scf00823g00002.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf15907g00001.1	AT4G35680.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=503	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf04526g02005.1	sp|Q2QKB4|U2A2B_WHEAT	*-*-	Splicing factor U2af large subunit B		
Niben101Scf06501g01001.1	AT1G05370.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=417	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf12746g00013.1	AT1G02205.3	****	Fatty acid hydroxylase superfamily LENGTH=630	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07162g04012.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf07751g01008.1	emb|CDY52515.1|	***-	BnaC03g61080D [Brassica napus]		
Niben101Scf00402g04003.1			Unknown protein		
Niben101Scf09170g01018.1	sp|Q9LTR9|NMT1_ARATH	*-**	Glycylpeptide N-tetradecanoyltransferase 1	IPR000903 (Myristoyl-CoA:protein N-myristoyltransferase)	GO:0004379 (glycylpeptide N-tetradecanoyltransferase activity), GO:0006499 (N-terminal protein myristoylation)
Niben101Scf01451g06015.1	sp|Q9UUB6|UBLH2_SCHPO	****	Ubiquitin carboxyl-terminal hydrolase 2	IPR001578 (Peptidase C12, ubiquitin carboxyl-terminal hydrolase), IPR017390 (Ubiquitinyl hydrolase, UCH37 type)	GO:0004843 (ubiquitin-specific protease activity), GO:0005622 (intracellular), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0008242 (omega peptidase activity)
Niben101Scf05822g01001.1	gb|ADX62220.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia mexicana]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf02358g01010.1	AT1G08050.1	*-**	Zinc finger (C3HC4-type RING finger) family protein LENGTH=641	IPR002035 (von Willebrand factor, type A), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05241g00010.1	sp|Q8W1P0|CSN6B_ARATH	***-	COP9 signalosome complex subunit 6b	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR024969 (Rpn11/EIF3F C-terminal domain)	GO:0005515 (protein binding)
Niben101Scf08590g00002.1	AT4G24230.6	*-**	acyl-CoA-binding domain 3 LENGTH=366	IPR014352 (FERM/acyl-CoA-binding protein, 3-helical bundle), IPR020683 (Ankyrin repeat-containing domain), IPR027310 (Profilin conserved site)	GO:0000062 (fatty-acyl-CoA binding), GO:0003779 (actin binding), GO:0005515 (protein binding)
Niben101Scf13231g03003.1	sp|Q9SPU7|TERT_ARATH	****	Telomerase reverse transcriptase	IPR003545 (Telomerase reverse transcriptase), IPR021891 (Telomerase ribonucleoprotein complex - RNA-binding domain)	GO:0003677 (DNA binding), GO:0003721 (telomeric template RNA reverse transcriptase activity), GO:0003964 (RNA-directed DNA polymerase activity), GO:0005634 (nucleus)
Niben101Scf02564g15004.1	sp|Q9C6Z2|NUD25_ARATH	--*-	Nudix hydrolase 25		
Niben101Ctg15672g00001.1	gb|AGS78073.1|	*-*-	legume-specific protein [Aeschynomene indica]		
Niben101Scf06793g00006.1	sp|Q9ZQA8|PABP7_ARATH	****	Polyadenylate-binding protein 7	IPR006515 (Polyadenylate binding protein, human types 1, 2, 3, 4), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf09552g01008.1	emb|CDX94943.1|	***-	BnaC05g07280D [Brassica napus]		
Niben101Scf23098g00001.1	sp|Q6IE26|EPHX4_MOUSE	*-*-	Epoxide hydrolase 4	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf00370g04025.1	AT1G54860.1	***-	Glycoprotein membrane precursor GPI-anchored LENGTH=200		
Niben101Scf05216g09019.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02340g00015.1	tpg|DAA37368.1|	*-*-	TPA: hypothetical protein ZEAMMB73_610235 [Zea mays]		
Niben101Scf00941g03013.1	sp|Q8LC53|EPF2_ARATH	***-	Protein EPIDERMAL PATTERNING FACTOR 2		
Niben101Scf01025g07003.1	emb|CDY62568.1|	*-*-	BnaCnng40410D [Brassica napus]	IPR022212 (Protein of unknown function DUF3741)	
Niben101Scf13186g03006.1	AT3G27820.1	****	monodehydroascorbate reductase 4 LENGTH=488	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR016156 (FAD/NAD-linked reductase, dimerisation domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02514g01003.1	ref|XP_003623907.1|	*-*-	KDEL motif-containing protein [Medicago truncatula]	IPR006598 (Lipopolysaccharide-modifying protein)	
Niben101Scf08321g03006.1			Unknown protein		
Niben101Scf01987g00017.1	sp|Q9SFC7|FB135_ARATH	--*-	F-box protein		
Niben101Scf13777g00007.1	sp|Q5F4K8|PAT_PINPS	***-	Aspartate aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf11609g00002.1	AT2G48140.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=200	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00369g09016.1	gb|AES82432.2|	*-*-	heparan-alpha-glucosaminide N-acetyltransferase-like protein [Medicago truncatula]		
Niben101Scf08240g01017.1			Unknown protein		
Niben101Scf05764g03012.1	sp|Q7U3T9|RL7_SYNPX	*-*-	50S ribosomal protein L7/L12	IPR000206 (Ribosomal protein L7/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03802g00019.1	sp|Q6NPT8|PP2B1_ARATH	*-*-	F-box protein PP2-B1	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf00539g07034.1	sp|Q9D113|DNLZ_MOUSE	*-**	DNL-type zinc finger protein	IPR007853 (Zinc finger, DNL-type), IPR024158 (Mitochondrial import protein TIM15)	GO:0008270 (zinc ion binding)
Niben101Scf04875g06004.1	emb|CDY08159.1|	***-	BnaA06g15670D [Brassica napus]		
Niben101Scf00819g13001.1	gb|ABA96219.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf02407g02013.1	AT5G51160.1	***-	Ankyrin repeat family protein LENGTH=442	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf00550g00014.1	sp|O22126|FLA8_ARATH	***-	Fasciclin-like arabinogalactan protein 8	IPR000782 (FAS1 domain)	
Niben101Scf05137g01009.1	AT2G37820.1	***-	Cysteine/Histidine-rich C1 domain family protein LENGTH=290	IPR011424 (C1-like)	GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf15671g01004.1	sp|Q5M786|WDR5_XENTR	--*-	WD repeat-containing protein 5	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00182g06002.1	emb|CDY45072.1|	***-	BnaA02g05040D [Brassica napus]	IPR007650 (Zf-FLZ domain)	
Niben101Scf04998g00004.1	AT5G48620.1	*-*-	Disease resistance protein (CC-NBS-LRR class) family LENGTH=908	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf07722g01019.1	AT5G23250.1	****	Succinyl-CoA ligase, alpha subunit LENGTH=341	IPR005810 (Succinyl-CoA ligase, alpha subunit), IPR016040 (NAD(P)-binding domain), IPR016102 (Succinyl-CoA synthetase-like)	GO:0003824 (catalytic activity), GO:0003878 (ATP citrate synthase activity), GO:0004775 (succinate-CoA ligase (ADP-forming) activity), GO:0008152 (metabolic process), GO:0048037 (cofactor binding)
Niben101Scf04044g22002.1	sp|Q9CR50|ZN363_MOUSE	****	RING finger and CHY zinc finger domain-containing protein 1	IPR004039 (Rubredoxin-type fold), IPR008913 (Zinc finger, CHY-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017921 (Zinc finger, CTCHY-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02043g05015.1	ref|XP_003626920.1|	--**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00127g04004.1	sp|Q5B2V1|HSP70_EMENI	*-*-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf07631g02015.1	gb|ACG48000.1|	--*-	holocarboxylase synthetase [Zea mays]		
Niben101Scf05955g03041.1	sp|A8AH48|MDTK_CITK8	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf09442g05004.1	ref|XP_007046503.1|	***-	Transducin/WD40 repeat-like superfamily protein isoform 1 [Theobroma cacao] gb|EOX90660.1| Transducin/WD40 repeat-like superfamily protein isoform 1 [Theobroma cacao]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf06986g01008.1	ref|XP_003630311.1|	****	GPI transamidase component gaa1 [Medicago truncatula] gb|AET04787.1| glycosylphosphatidylinositol anchor attachment-like protein [Medicago truncatula]	IPR007246 (Gaa1-like, GPI transamidase component)	GO:0016021 (integral component of membrane), GO:0042765 (GPI-anchor transamidase complex)
Niben101Scf05956g00004.1	gb|ABD64919.1|	***-	Lil3 protein, putative [Brassica oleracea]		
Niben101Scf07616g01002.1	sp|Q568T4|HIKES_DANRE	--*-	Protein Hikeshi	IPR008493 (Protein of unknown function DUF775)	
Niben101Scf03255g00005.1	sp|Q9LVQ4|Y5586_ARATH	*-*-	WEB family protein	IPR008545 (WEB family)	
Niben101Scf13415g00021.1	sp|Q58405|THS_METJA	--*-	Thermosome subunit	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process)
Niben101Scf10169g00005.1	sp|O49686|PYR1_ARATH	***-	Abscisic acid receptor PYR1	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Ctg16164g00004.1	ref|WP_029158163.1|	-**-	dihydrodipicolinate synthase [Peptoclostridium difficile]		
Niben101Scf07023g02003.1			Unknown protein		
Niben101Scf08249g02010.1	AT5G51220.1	***-	ubiquinol-cytochrome C chaperone family protein LENGTH=281	IPR021150 (Ubiquinol-cytochrome c chaperone/UPF0174)	
Niben101Scf05619g00011.1	gb|AES68813.2|	*-*-	NBS-LRR type disease resistance protein [Medicago truncatula]	IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0043531 (ADP binding)
Niben101Scf07991g02002.1	ref|XP_003598668.1|	*-*-	Auxin-induced protein 5NG4 [Medicago truncatula] gb|AES68919.1| nodulin MtN21/EamA-like transporter family protein [Medicago truncatula]		
Niben101Scf15317g00002.1			Unknown protein		
Niben101Scf02246g03010.1	sp|P62427|RL7A_NANEQ	*-*-	50S ribosomal protein L7Ae	IPR018492 (Ribosomal protein L7Ae/L8/Nhp2 family), IPR029064 (50S ribosomal protein L30e-like)	GO:0003723 (RNA binding), GO:0005730 (nucleolus)
Niben101Scf04738g05012.1	dbj|BAO49706.1|	*-*-	nuclear pore complex protein Nup136b [Nicotiana benthamiana]		
Niben101Scf03224g14005.1	sp|Q80Z60|ECE2_MOUSE	--*-	Endothelin-converting enzyme 2		
Niben101Scf01374g00008.1	sp|B9K895|RS17_THENN	*-*-	30S ribosomal protein S17	IPR000266 (Ribosomal protein S17), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09987g03002.1	AT1G22400.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06504g00017.1	AT4G10925.1	***-	Nuclear transport factor 2 (NTF2) family protein LENGTH=231	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf09550g00001.1	sp|O65351|SUBL_ARATH	--*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf04537g00005.1	AT4G01210.1	***-	glycosyl transferase family 1 protein LENGTH=1031	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf03295g09001.1	sp|A3DF24|DNAJ_CLOTH	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf02227g06029.1	sp|Q9LSL8|PP446_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01428g00006.1	gb|ADM75397.1|	***-	late embryogenesis abundant-like protein, partial [Picea sitchensis]	IPR009646 (Root cap)	
Niben101Scf12924g00004.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf02074g05067.1			Unknown protein		
Niben101Scf02847g00008.1			Unknown protein		
Niben101Scf05669g02018.1	sp|Q3KPT3|TSSC1_XENLA	--*-	Protein TSSC1		
Niben101Scf03293g01005.1	sp|B6JND5|RS11_HELP2	***-	30S ribosomal protein S11	IPR001971 (Ribosomal protein S11)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02982g03019.1	AT3G23820.1	****	UDP-D-glucuronate 4-epimerase 6 LENGTH=460	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf03389g00015.1	AT1G51538.1	***-	Aminotransferase-like, plant mobile domain family protein LENGTH=696	IPR006904 (Protein of unknown function DUF716 (TMEM45)), IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf05702g02019.1	sp|Q7ZV90|PIF1_DANRE	****	ATP-dependent DNA helicase PIF1	IPR010285 (DNA helicase Pif1 like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf06076g00026.1	sp|Q32LS6|ABHDD_DANRE	***-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf06661g00011.1	AT3G12120.1	***-	fatty acid desaturase 2 LENGTH=383	IPR005804 (Fatty acid desaturase, type 1), IPR021863 (Protein of unknown function DUF3474)	GO:0006629 (lipid metabolic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0055114 (oxidation-reduction process)
Niben101Scf01259g00008.1			Unknown protein		
Niben101Scf02074g03041.1	sp|P93311|RM02_ARATH	*-*-	60S ribosomal protein L2, mitochondrial		
Niben101Scf07972g01004.1	emb|CDY35069.1|	***-	BnaA06g10790D [Brassica napus]		
Niben101Scf01227g04006.1	sp|O04202|EIF3F_ARATH	***-	Eukaryotic translation initiation factor 3 subunit F		
Niben101Scf04988g01013.1	AT1G18040.1	****	cyclin-dependent kinase D1;3 LENGTH=391	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00887g04011.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05346g07002.1	ref|WP_008049498.1|	****	GTP-binding protein EngC [Arthrospira sp. PCC 8005] emb|CCE15567.1| putative GTPase, EngC-like [Arthrospira sp. PCC 8005] emb|CDM94137.1| putative GTPase, EngC-like [Arthrospira sp. PCC 8005]	IPR004881 (Ribosome biogenesis GTPase RsgA, putative), IPR012340 (Nucleic acid-binding, OB-fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf00983g01005.1	ref|XP_002525000.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF37407.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01758g01011.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf07742g02001.1	sp|P49961|ENTP1_HUMAN	***-	Ectonucleoside triphosphate diphosphohydrolase 1	IPR000407 (Nucleoside phosphatase GDA1/CD39)	GO:0016787 (hydrolase activity)
Niben101Scf12582g02009.1	sp|P70168|IMB1_MOUSE	*-*-	Importin subunit beta-1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf00167g05008.1	sp|Q9FIH9|CML37_ARATH	*-**	Calcium-binding protein CML37	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf09544g00007.1	sp|Q5SLR4|ODBA_THET8	***-	2-oxoisovalerate dehydrogenase subunit alpha	IPR001017 (Dehydrogenase, E1 component), IPR029061 (Thiamin diphosphate-binding fold)	GO:0008152 (metabolic process), GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor)
Niben101Scf06736g02004.1	sp|P05100|3MG1_ECOLI	****	DNA-3-methyladenine glycosylase 1	IPR005019 (Methyladenine glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0008725 (DNA-3-methyladenine glycosylase activity)
Niben101Scf02622g12018.1	ref|XP_002510562.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF52749.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02125g00020.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf16234g01020.1	AT1G11925.1	***-	Stigma-specific Stig1 family protein LENGTH=140	IPR006969 (Stigma-specific protein Stig1)	
Niben101Scf06666g01016.1	gb|AIU50013.1|	*-*-	tunicamycin induced 1, partial [Medicago truncatula]		
Niben101Scf02408g01012.1	emb|CDY20155.1|	--*-	BnaA01g28470D [Brassica napus]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf09659g03001.1	ref|XP_003629733.1|	****	Ran-binding protein [Medicago truncatula] gb|AET04209.1| importin beta-3, putative [Medicago truncatula]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf01065g02016.1	ref|XP_002515459.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF46908.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04926g04018.1	AT1G32740.1	****	SBP (S-ribonuclease binding protein) family protein LENGTH=312	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf34010g00001.1	sp|Q8S8V2|YCF2A_ATRBE	*-*-	Protein Ycf2 A	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf14939g01015.1	sp|Q9S850|SUOX_ARATH	***-	Sulfite oxidase	IPR008335 (Eukaryotic molybdopterin oxidoreductase), IPR014756 (Immunoglobulin E-set)	GO:0009055 (electron carrier activity), GO:0016491 (oxidoreductase activity), GO:0030151 (molybdenum ion binding), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03673g05012.1	AT1G20610.1	****	Cyclin B2;3 LENGTH=429	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf02699g00016.1	sp|Q09704|RRP4_SCHPO	****	Exosome complex component rrp4	IPR004088 (K Homology domain, type 1), IPR012340 (Nucleic acid-binding, OB-fold), IPR026699 (Exosome complex RNA-binding protein 1/RRP40/RRP4)	GO:0000178 (exosome (RNase complex)), GO:0003723 (RNA binding)
Niben101Scf02494g12014.1	AT5G62260.1	*-*-	AT hook motif DNA-binding family protein LENGTH=404	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf13005g00003.1	sp|Q8VXU6|DI194_ARATH	*-*-	Protein DEHYDRATION-INDUCED 19 homolog 4	IPR008598 (Drought induced 19 protein-like, zinc-binding domain)	
Niben101Scf00789g00002.1	AT4G13370.1	***-	Plant protein of unknown function (DUF936) LENGTH=673	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Scf01658g02008.1	sp|Q8LFH7|RL371_ARATH	***-	60S ribosomal protein L37-1	IPR001569 (Ribosomal protein L37e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00146g03007.1	sp|O49255|NAC29_ARATH	-***	NAC transcription factor 29	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00571g07005.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00747g12032.1	sp|Q9C5V5|GLR28_ARATH	****	Glutamate receptor 2.8	IPR001320 (Ionotropic glutamate receptor), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf13103g01042.1			Unknown protein	IPR000167 (Dehydrin)	GO:0006950 (response to stress), GO:0009415 (response to water)
Niben101Scf01975g03002.1	sp|Q9ZU91|E133_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 3	IPR012946 (X8 domain)	
Niben101Scf06023g01003.1	sp|Q8RVQ5|SEC10_ARATH	*-*-	Exocyst complex component SEC10	IPR009976 (Exocyst complex component Sec10-like)	GO:0005737 (cytoplasm), GO:0006887 (exocytosis), GO:0048278 (vesicle docking)
Niben101Scf06408g04003.1	ref|NP_012629.1|	****	Sfc1p [Saccharomyces cerevisiae S288c] RecName: Full=Succinate/fumarate mitochondrial transporter; AltName: Full=Regulator of acetyl-CoA synthase activity [Saccharomyces cerevisiae S288c] emb|CAA89624.1| ACR1 [Saccharomyces cerevisiae] gb|AAT92943.1| YJR095W [Saccharomyces cerevisiae] gb|EDN63411.1| succinate-fumarate transporter [Saccharomyces cerevisiae YJM789] gb|EDV12833.1| succinate-fumarate transport protein [Saccharomyces cerevisiae RM11-1a] gb|EEU08055.1| Sfc1p [Saccharomyces cerevisiae JAY291] emb|CAY80808.1| Sfc1p [Saccharomyces cerevisiae EC1118] tpg|DAA08880.1| TPA: Sfc1p [Saccharomyces cerevisiae S288c] gb|EGA74293.1| Sfc1p [Saccharomyces cerevisiae AWRI796] gb|EGA82148.1| Sfc1p [Saccharomyces cerevisiae Lalvin QA23] gb|EGA86117.1| Sfc1p [Saccharomyces cerevisiae VL3] gb|EHN06265.1| Sfc1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7] gb|EIW09618.1| Sfc1p [Saccharomyces cerevisiae CEN.PK113-7D] gb|EWG85187.1| Sfc1p [Saccharomyces cerevisiae R008] gb|EWG95186.1| Sfc1p [Saccharomyces cerevisiae R103] gb|AHY79078.1| Sfc1p [Saccharomyces cerevisiae YJM993]	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf07287g01001.1	sp|Q92383|MAG1_SCHPO	*-**	DNA-3-methyladenine glycosylase 1	IPR011257 (DNA glycosylase), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair)
Niben101Scf06155g01004.1	AT2G04865.1	***-	Aminotransferase-like, plant mobile domain family protein LENGTH=667	IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf04401g06001.1	sp|Q6ZSG1|RN165_HUMAN	--*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07713g00002.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00320g00003.1	dbj|BAA05479.1|	***-	tumor-related protein [Nicotiana glauca x Nicotiana langsdorffii]		
Niben101Scf03962g00007.1	AT2G24220.1	***-	purine permease 5 LENGTH=361	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf02581g01001.1	sp|P0CR33|SDHF2_CRYNB	*-*-	Succinate dehydrogenase assembly factor 2, mitochondrial	IPR005631 (Flavinator of succinate dehydrogenase)	
Niben101Scf04709g00004.1	sp|Q1XDC7|YCF60_PYRYE	*-*-	Tic20 family protein Ycf60		
Niben101Scf14726g00002.1	AT5G10240.1	****	asparagine synthetase 3 LENGTH=578	IPR006426 (Asparagine synthase, glutamine-hydrolyzing), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004066 (asparagine synthase (glutamine-hydrolyzing) activity), GO:0006529 (asparagine biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf00991g13023.1	sp|Q50228|FMDA_METME	***-	Formamidase	IPR004304 (Acetamidase/Formamidase)	GO:0016811 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides)
Niben101Scf06588g01002.1	sp|Q9ZNU2|NAC18_ARATH	*-*-	NAC domain-containing protein 18	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10283g01004.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10847g00008.1	gb|AID21636.1|	***-	At4g21420p-like protein [Arabidopsis lyrata]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf04177g02015.1	AT2G46910.1	*-*-	Plastid-lipid associated protein PAP / fibrillin family protein LENGTH=284		
Niben101Scf05438g05027.1	gb|KEH36884.1|	***-	F-box plant-like protein, putative [Medicago truncatula]	IPR007248 (Mpv17/PMP22), IPR027949 (Petal formation-expressed)	GO:0016021 (integral component of membrane)
Niben101Scf06158g01012.1	sp|Q54VG1|GPA12_DICDI	--*-	Guanine nucleotide-binding protein alpha-12 subunit	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf02749g02016.1	sp|Q7PC79|XPOT_ARATH	***-	Exportin-T	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00807g01004.1			Unknown protein		
Niben101Scf06385g00017.1	AT5G20810.2	***-	SAUR-like auxin-responsive protein family LENGTH=190	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01579g01031.1	sp|Q14498|RBM39_HUMAN	--**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01160g01005.1	sp|P27496|CB25_TOBAC	***-	Chlorophyll a-b binding protein 50, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf10902g00006.1	emb|CDY23272.1|	***-	BnaA08g12740D [Brassica napus]	IPR010471 (Protein of unknown function DUF1068)	
Niben101Scf01212g02005.1	sp|Q9FJ41|GDL85_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf10560g00006.1	sp|Q9ZVJ3|MA655_ARATH	****	65-kDa microtubule-associated protein 5	IPR007145 (Microtubule-associated protein, MAP65/Ase1/PRC1)	GO:0000226 (microtubule cytoskeleton organization), GO:0000910 (cytokinesis), GO:0008017 (microtubule binding)
Niben101Scf02517g15004.1	sp|Q8HSW1|KAD1_SOLTU	*-*-	Adenylate kinase	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00126g07003.1	sp|Q56YP2|PI5K1_ARATH	*-**	Phosphatidylinositol 4-phosphate 5-kinase 1	IPR002498 (Phosphatidylinositol-4-phosphate 5-kinase, core), IPR003409 (MORN motif), IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf01111g00001.1	sp|Q5R746|YTDC2_PONAB	*-*-	YTH domain-containing protein 2	IPR007275 (YTH domain)	
Niben101Scf07203g02004.1			Unknown protein		
Niben101Scf06344g05003.1	sp|Q93ZR6|WSD1_ARATH	****	O-acyltransferase WSD1	IPR004255 (O-acyltransferase, WSD1, N-terminal), IPR009721 (O-acyltransferase, WSD1, C-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity), GO:0045017 (glycerolipid biosynthetic process)
Niben101Scf00271g09022.1	sp|P49027|GBLPA_ORYSJ	*-**	Guanine nucleotide-binding protein subunit beta-like protein A	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf00146g03008.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04172g02008.1	AT5G43900.3	****	myosin 2 LENGTH=1565	IPR000048 (IQ motif, EF-hand binding site), IPR002710 (Dilute), IPR004009 (Myosin, N-terminal, SH3-like), IPR027401 (Myosin-like IQ motif-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf14028g02012.1	sp|Q0WPE9|NAT7_ARATH	****	Nucleobase-ascorbate transporter 7	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf07226g00002.1	AT5G45360.1	***-	F-box family protein LENGTH=316	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf07340g00001.1	ref|XP_007023276.1|	--*-	BED zinc finger,hAT family dimerization domain [Theobroma cacao] gb|EOY25898.1| BED zinc finger,hAT family dimerization domain [Theobroma cacao]	IPR025525 (hAT-like transposase, RNase-H fold)	GO:0003677 (DNA binding)
Niben101Scf06914g00006.1			Unknown protein		
Niben101Scf08679g04011.1	sp|Q6TKS7|MX_CTEID	--**	Interferon-induced GTP-binding protein Mx	IPR000375 (Dynamin central domain), IPR022812 (Dynamin superfamily)	GO:0005525 (GTP binding)
Niben101Scf01489g01037.1	ref|XP_007039639.1|	--*-	Histone H3 K4-specific methyltransferase SET7/9 family protein [Theobroma cacao] gb|EOY24140.1| Histone H3 K4-specific methyltransferase SET7/9 family protein [Theobroma cacao]		
Niben101Scf00861g07011.1			Unknown protein		
Niben101Scf00215g08002.1	ref|XP_002512211.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF50245.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09767g00001.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf04950g04015.1	sp|Q3M8N2|PFKA_ANAVT	****	ATP-dependent 6-phosphofructokinase	IPR000023 (Phosphofructokinase domain), IPR012004 (Pyrophosphate-dependent phosphofructokinase TP0108), IPR022953 (Phosphofructokinase)	GO:0003872 (6-phosphofructokinase activity), GO:0005524 (ATP binding), GO:0006002 (fructose 6-phosphate metabolic process), GO:0006096 (glycolytic process)
Niben101Scf13934g00023.1	sp|Q9VUN3|RANL_DROME	****	GTP-binding nuclear protein Ran-like	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02606g05026.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00158g03003.1	AT4G36195.1	*-**	Serine carboxypeptidase S28 family protein LENGTH=488	IPR008758 (Peptidase S28)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf03515g00072.1	sp|Q9LK50|AB26G_ARATH	*-*-	ABC transporter G family member 26		
Niben101Scf04793g00002.1	sp|Q8N5U6|RNF10_HUMAN	*-*-	RING finger protein 10	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03349g00013.1	sp|O22478|IMA_SOLLC	***-	Importin subunit alpha	IPR016024 (Armadillo-type fold), IPR024931 (Importin subunit alpha)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006606 (protein import into nucleus), GO:0008565 (protein transporter activity)
Niben101Scf00485g02019.1	AT5G51680.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=343		
Niben101Scf01025g04007.1	sp|Q07761|RL23A_TOBAC	***-	60S ribosomal protein L23a	IPR005633 (Ribosomal protein L23/L25, N-terminal), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf37888g00001.1	sp|Q5Z922|S40A1_ORYSJ	***-	Solute carrier family 40 member 1	IPR009716 (Ferroporti-1), IPR020846 (Major facilitator superfamily domain)	GO:0005381 (iron ion transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0034755 (iron ion transmembrane transport)
Niben101Scf06779g01002.1	AT2G38940.1	****	phosphate transporter 1;4 LENGTH=534	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005315 (inorganic phosphate transmembrane transporter activity), GO:0006817 (phosphate ion transport), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf06397g01003.1	gb|AES81813.2|	--*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf07227g01009.1	gb|KEH34855.1|	*-*-	SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein [Medicago truncatula]		
Niben101Scf00862g02049.1	ref|XP_003617186.1|	***-	Nuclear control of ATPase protein [Medicago truncatula] gb|AET00145.1| ATP synthase regulation protein NCA2 [Medicago truncatula]	IPR013946 (Nuclear control of ATP synthase 2)	
Niben101Scf04007g02018.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03486g01013.1	AT4G22740.1	*-*-	glycine-rich protein LENGTH=356		
Niben101Scf01281g10010.1	sp|Q9S9Q9|Y1044_ARATH	*-*-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf00163g13002.1	AT5G06130.2	***-	chaperone protein dnaJ-related LENGTH=315	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf06076g00027.1	sp|Q5BIY5|RN145_XENLA	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02853g00002.1	emb|CDH57195.1|	*-**	purine transporter [Lichtheimia corymbifera JMRC:FSU:9682]	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0005345 (purine nucleobase transmembrane transporter activity), GO:0006810 (transport), GO:0006863 (purine nucleobase transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01548g00001.1	ref|NP_689699.2|	--*-	sterile alpha motif domain-containing protein 11 [Homo sapiens]	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf15346g00003.1	AT5G49890.1	****	chloride channel C LENGTH=779	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf16246g00002.1	AT1G22850.1	***-	SNARE associated Golgi protein family LENGTH=344		
Niben101Scf08126g00024.1	sp|C3PLS6|NUOH_RICAE	--*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf01070g04010.1			Unknown protein	IPR006706 (Extensin domain)	GO:0005199 (structural constituent of cell wall), GO:0009664 (plant-type cell wall organization)
Niben101Scf10559g01039.1	AT1G64530.1	*-*-	Plant regulator RWP-RK family protein LENGTH=841	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01131g00003.1	AT2G23093.1	***-	Major facilitator superfamily protein LENGTH=449	IPR008509 (Molybdate-anion transporter MOT2), IPR020846 (Major facilitator superfamily domain)	GO:0015098 (molybdate ion transmembrane transporter activity), GO:0015689 (molybdate ion transport), GO:0016021 (integral component of membrane)
Niben101Scf04847g03017.1	sp|Q55FP1|TF2H1_DICDI	*-**	General transcription factor IIH subunit 1	IPR005607 (BSD), IPR011993 (Pleckstrin homology-like domain), IPR027079 (TFIIH subunit Tfb1/p62)	GO:0000439 (core TFIIH complex), GO:0006289 (nucleotide-excision repair), GO:0006351 (transcription, DNA-templated)
Niben101Scf05737g00003.1	sp|O78502|PSAD_GUITH	*-**	Photosystem I reaction center subunit II	IPR003685 (Photosystem I PsaD)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf01428g00005.1	sp|Q9SX26|PCR12_ARATH	***-	Protein PLANT CADMIUM RESISTANCE 12	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf14636g01024.1	AT1G68140.1	*-*-	Protein of unknown function (DUF1644) LENGTH=334	IPR012866 (Protein of unknown function DUF1644), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf07027g02002.1	sp|B2I798|ACP_XYLF2	***-	Acyl carrier protein	IPR003231 (Acyl carrier protein (ACP)), IPR009081 (Acyl carrier protein-like)	GO:0006633 (fatty acid biosynthetic process)
Niben101Scf02469g01001.1	AT3G54660.1	****	glutathione reductase LENGTH=565	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR016156 (FAD/NAD-linked reductase, dimerisation domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08033g02012.1	AT3G53210.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=369	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf08874g01016.1	sp|Q9CAR3|KINGL_ARATH	*-*-	SNF1-related protein kinase regulatory subunit gamma-1-like	IPR000644 (CBS domain)	
Niben101Scf16582g00010.1	sp|Q9LZP9|CP122_ARATH	***-	Calvin cycle protein CP12-2, chloroplastic	IPR003823 (Domain of unknown function CP12)	
Niben101Scf01593g05010.1	sp|Q8GTM0|DEF_NICAL	*-*-	Flower-specific defensin		
Niben101Scf01563g02005.1	emb|CDY47281.1|	--*-	BnaA10g03650D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf05381g00009.1	sp|Q9MA49|JAL2_ARATH	***-	Jacalin-related lectin 2	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf05323g01001.1	sp|Q9FUY2|LEUNG_ARATH	*-*-	Transcriptional corepressor LEUNIG		
Niben101Scf00786g00008.1	sp|Q2RNG2|GLND_RHORT	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf18589g00012.1	sp|Q9H9S4|CB39L_HUMAN	****	Calcium-binding protein 39-like	IPR013878 (Mo25-like)	GO:0005488 (binding)
Niben101Scf00283g04008.1	sp|Q9V535|RBM8A_DROME	*-**	RNA-binding protein 8A	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00454g01011.1	sp|Q9CAM7|RFC2_ARATH	*-*-	Replication factor C subunit 2		
Niben101Scf06788g00007.1	ref|XP_003605540.1|	****	Ran-binding protein [Medicago truncatula] gb|AES87737.1| SPla/RYanodine receptor (SPRY) domain protein [Medicago truncatula]	IPR001870 (B30.2/SPRY domain), IPR006594 (LisH dimerisation motif), IPR013144 (CRA domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024964 (CTLH/CRA C-terminal to LisH motif domain), IPR027713 (Protein Ssh4 like)	GO:0005515 (protein binding)
Niben101Scf17612g02003.1	sp|Q9RWN1|PFKA_DEIRA	****	ATP-dependent 6-phosphofructokinase	IPR000023 (Phosphofructokinase domain), IPR012004 (Pyrophosphate-dependent phosphofructokinase TP0108), IPR022953 (Phosphofructokinase)	GO:0003872 (6-phosphofructokinase activity), GO:0005524 (ATP binding), GO:0006002 (fructose 6-phosphate metabolic process), GO:0006096 (glycolytic process)
Niben101Scf01959g03013.1	sp|Q94758|DYL1_SCHMA	***-	Dynein light chain	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Scf10254g01010.1	sp|Q9LFC5|PP360_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03488g08009.1			Unknown protein		
Niben101Scf14151g00014.1			Unknown protein		
Niben101Scf01911g02007.1	sp|C3MZB8|RL11_SULIA	***-	50S ribosomal protein L11	IPR000911 (Ribosomal protein L11/L12)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00380g01005.1	AT1G62940.1	***-	acyl-CoA synthetase 5 LENGTH=542	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01538g04008.1	sp|Q9LDB4|NLTP6_ARATH	****	Non-specific lipid-transfer protein 6	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf00536g03003.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf03528g00004.1	sp|Q9LT84|U496M_ARATH	***-	UPF0496 protein	IPR007749 (Protein of unknown function DUF677)	
Niben101Scf08143g03011.1	sp|P04106|TBA_TRYBR	***-	Tubulin alpha chain	IPR000217 (Tubulin)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf05881g01008.1	sp|Q9CQ07|LRC18_MOUSE	--*-	Leucine-rich repeat-containing protein 18		
Niben101Scf00438g00017.1	gb|AFI44275.1|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Silene vulgaris]		
Niben101Scf03239g05024.1	AT5G43120.1	***-	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein LENGTH=588	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04237g00025.1	sp|Q7ZVR1|WDR75_DANRE	***-	WD repeat-containing protein 75	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03536g01017.1	AT1G22400.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00457g12002.1	AT5G03450.1	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=630		
Niben101Scf01383g09020.1	sp|Q9C9Y4|FB136_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01383g02017.1	sp|Q9FJR0|RENT1_ARATH	*-*-	Regulator of nonsense transcripts 1 homolog		
Niben101Scf05886g03008.1	emb|CDX80033.1|	*-*-	BnaA05g01230D [Brassica napus]		
Niben101Scf03444g04023.1			Unknown protein	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Ctg16103g00005.1	AT4G25940.1	***-	ENTH/ANTH/VHS superfamily protein LENGTH=601	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf01862g00004.1	AT1G14890.1	*-**	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=219	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00069g01003.1	ref|XP_003628466.1|	--*-	Pre-mRNA-splicing factor SF2 [Medicago truncatula]	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf07034g08028.1	sp|Q5TGY1|TMCO4_HUMAN	*-*-	Transmembrane and coiled-coil domain-containing protein 4	IPR007941 (Protein of unknown function DUF726), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03365g03018.1	sp|Q96AY4|TTC28_HUMAN	*-*-	Tetratricopeptide repeat protein 28	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01334g00002.1	AT1G04560.1	***-	AWPM-19-like family protein LENGTH=186	IPR008390 (AWPM-19-like)	
Niben101Scf01102g02004.1	sp|Q88J85|MSUE_PSEPK	--**	FMN reductase (NADPH)	IPR029039 (Flavoprotein-like)	GO:0016491 (oxidoreductase activity)
Niben101Scf10330g02004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013032 (EGF-like, conserved site), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf13777g00006.1	gb|AGZ19454.1|	*-*-	APOLLO [Boechera sp. IPK 1]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf09030g04003.1			Unknown protein		
Niben101Scf07459g00017.1	sp|Q1W375|PMM_TOBAC	****	Phosphomannomutase	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0004615 (phosphomannomutase activity), GO:0005737 (cytoplasm), GO:0008152 (metabolic process), GO:0019307 (mannose biosynthetic process)
Niben101Scf16185g00007.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08785g02013.1	AT1G29520.1	***-	AWPM-19-like family protein LENGTH=158	IPR008390 (AWPM-19-like)	
Niben101Scf05060g01010.1	sp|P41098|RL34_TOBAC	***-	60S ribosomal protein L34	IPR008195 (Ribosomal protein L34Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02891g04007.1	ref|XP_002526322.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF36058.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06613g02001.1	gb|KEH24534.1|	***-	stress regulated protein [Medicago truncatula]		
Niben101Scf02261g00011.1	ref|XP_007040372.1|	***-	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao] gb|EOY24873.1| Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao]	IPR004864 (Late embryogenesis abundant protein, LEA-14), IPR013783 (Immunoglobulin-like fold)	
Niben101Scf02348g13007.1	AT1G09890.1	***-	Rhamnogalacturonate lyase family protein LENGTH=617	IPR008979 (Galactose-binding domain-like), IPR010325 (Rhamnogalacturonate lyase)	
Niben101Scf00361g01005.1			Unknown protein		
Niben101Scf20576g01001.1	sp|P46639|KNAT1_ARATH	--*-	Homeobox protein knotted-1-like 1		
Niben101Scf01626g03003.1	AT5G27240.1	*-*-	DNAJ heat shock N-terminal domain-containing protein LENGTH=1104	IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf05449g00018.1	AT4G29480.1	****	Mitochondrial ATP synthase subunit G protein LENGTH=122	IPR006808 (ATPase, F0 complex, subunit G, mitochondrial)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf06350g00013.1	ref|NP_001047002.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf14163g00004.1	sp|Q56YN3|NADK1_ARATH	****	NAD(H) kinase 1	IPR002504 (Inorganic polyphosphate/ATP-NAD kinase)	GO:0003951 (NAD+ kinase activity), GO:0006741 (NADP biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf01774g04007.1	gb|KEH40004.1|	****	basic leucine zipper transcription factor [Medicago truncatula]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04446g00023.1	sp|O05927|CYSH_PSEAE	****	Phosphoadenosine phosphosulfate reductase	IPR004508 (Thioredoxin-independent 5'-adenylylsulphate reductase), IPR012336 (Thioredoxin-like fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0019419 (sulfate reduction), GO:0055114 (oxidation-reduction process)
Niben101Scf02145g03005.1	sp|Q92576|PHF3_HUMAN	--*-	PHD finger protein 3	IPR001025 (Bromo adjacent homology (BAH) domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08081g03008.1			Unknown protein		
Niben101Scf00635g04005.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00747g11007.1	AT1G72330.3	***-	alanine aminotransferase 2 LENGTH=553	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf09729g00025.1	AT5G47750.1	****	D6 protein kinase like 2 LENGTH=586	IPR011009 (Protein kinase-like domain), IPR011993 (Pleckstrin homology-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05483g03004.1	sp|B6YV16|VATD_THEON	****	V-type ATP synthase subunit D	IPR002699 (ATPase, V1 complex, subunit D)	GO:0042626 (ATPase activity, coupled to transmembrane movement of substances)
Niben101Scf31976g00007.1	emb|CDX93540.1|	*-*-	BnaA06g05080D [Brassica napus]	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Scf08157g02010.1	ref|XP_002521829.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF40639.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01346g01009.1	sp|P0ABE0|BCCP_ECO57	*-**	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	IPR000089 (Biotin/lipoyl attachment), IPR001249 (Acetyl-CoA biotin carboxyl carrier)	GO:0003989 (acetyl-CoA carboxylase activity), GO:0006633 (fatty acid biosynthetic process), GO:0009317 (acetyl-CoA carboxylase complex)
Niben101Scf00757g02009.1	AT3G62200.1	*-*-	Putative endonuclease or glycosyl hydrolase LENGTH=673		
Niben101Scf04570g02013.1	gb|EJY80955.1|	--*-	Ankyrin repeat domain containing protein [Oxytricha trifallax]		
Niben101Scf05534g01007.1	AT4G09570.1	****	calcium-dependent protein kinase 4 LENGTH=501	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07984g02001.1	sp|Q14839|CHD4_HUMAN	--**	Chromodomain-helicase-DNA-binding protein 4	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04451g00024.1	gb|AFI44261.1|	***-	cytochrome c biogenesis FC (mitochondrion) [Silene vulgaris]		
Niben101Scf10322g01012.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06081g04005.1	sp|Q3B8G0|CA123_XENLA	***-	UPF0587 protein C1orf123 homolog	IPR008584 (Protein of unknown function DUF866, eukaryotic)	
Niben101Scf02714g04004.1	sp|P33530|PHYA1_TOBAC	***-	Phytochrome A1	IPR001294 (Phytochrome), IPR005467 (Signal transduction histidine kinase, core), IPR029016 (GAF domain-like)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0007165 (signal transduction), GO:0009584 (detection of visible light), GO:0016020 (membrane), GO:0018298 (protein-chromophore linkage)
Niben101Scf10616g01013.1	sp|Q62176|RBM38_MOUSE	*-**	RNA-binding protein 38	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03289g01005.1	sp|A2XCH8|CKS1_ORYSI	****	Cyclin-dependent kinases regulatory subunit 1	IPR000789 (Cyclin-dependent kinase, regulatory subunit)	GO:0007049 (cell cycle), GO:0016538 (cyclin-dependent protein serine/threonine kinase regulator activity)
Niben101Scf13798g00009.1	gb|AFV30775.1|	****	alpha-amylase 2, partial [Hordeum vulgare subsp. spontaneum]	IPR012850 (Alpha-amylase, C-terminal beta-sheet), IPR013780 (Glycosyl hydrolase, family 13, all-beta), IPR015902 (Glycoside hydrolase, family 13), IPR017853 (Glycoside hydrolase superfamily)	GO:0003824 (catalytic activity), GO:0004556 (alpha-amylase activity), GO:0005509 (calcium ion binding), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02029g00002.1	sp|D8QNI1|CSPLH_SELML	*-*-	CASP-like protein 5A1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf00149g07004.1	ref|NP_001032159.1|	***-	thiosulfate sulfurtransferase 18 [Arabidopsis thaliana] gb|AED98169.1| sulfurtransferase 18 [Arabidopsis thaliana]	IPR001763 (Rhodanese-like domain)	
Niben101Scf04018g12010.1	gb|KGN49156.1|	--*-	Transcription regulator [Cucumis sativus]		
Niben101Scf03628g00019.1	gb|ABD65058.1|	--**	GRF zinc finger containing protein [Brassica oleracea]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf17398g00013.1			Unknown protein		
Niben101Scf06078g03007.1	sp|P13436|OLEO1_MAIZE	***-	Oleosin Zm-I	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf18214g00004.1	AT5G04140.2	****	glutamate synthase 1 LENGTH=1648	IPR006005 (Glutamate synthase, NADH/NADPH, small subunit 1), IPR009051 (Alpha-helical ferredoxin), IPR016040 (NAD(P)-binding domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain), IPR028261 (Dihydroprymidine dehydrogenase domain II), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0003824 (catalytic activity), GO:0005506 (iron ion binding), GO:0006537 (glutamate biosynthetic process), GO:0006807 (nitrogen compound metabolic process), GO:0008152 (metabolic process), GO:0010181 (FMN binding), GO:0015930 (glutamate synthase activity), GO:0016040 (glutamate synthase (NADH) activity), GO:0016491 (oxidoreductase activity), GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors), GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor), GO:0045181 (glutamate synthase activity, NAD(P)H as acceptor), GO:0050660 (flavin adenine dinucleotide binding), GO:0051536 (iron-sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01689g08003.1	emb|CDY48661.1|	***-	BnaC07g27480D [Brassica napus]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf05615g03009.1	sp|Q5H7C0|CDC20_PIG	*-*-	Cell division cycle protein 20 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01382g03011.1			Unknown protein		
Niben101Scf01795g02014.1	emb|CDX88033.1|	--*-	BnaA06g26240D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00530g10012.1	sp|B3QY46|NUOC_CHLT3	--**	NADH-quinone oxidoreductase subunit C	IPR001268 (NADH:ubiquinone oxidoreductase, 30kDa subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04424g08001.1	sp|Q24JK4|XRCC1_ARATH	***-	DNA-repair protein XRCC1	IPR001357 (BRCT domain)	
Niben101Scf07086g00018.1	sp|Q07G10|ALKB8_XENTR	--*-	Alkylated DNA repair protein alkB homolog 8	IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	
Niben101Scf31418g00001.1			Unknown protein		
Niben101Scf00981g03005.1	AT2G31490.1	***-	unknown protein; Has 55 Blast hits to 55 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=71		
Niben101Scf09409g01003.1	gb|KEH39256.1|	--*-	F-box/FBD/LRR protein [Medicago truncatula]	IPR006566 (FBD domain)	
Niben101Scf07593g03015.1	sp|Q9M1K1|ORG2_ARATH	***-	Transcription factor ORG2	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf04474g02003.1	sp|Q7Y1B6|GAI_SOLLC	***-	DELLA protein GAI	IPR005202 (Transcription factor GRAS), IPR021914 (Transcriptional factor DELLA, N-terminal), IPR030006 (Transcriptional factor DELLA)	
Niben101Scf13757g00005.1	sp|A1B031|RS19_PARDP	--*-	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00402g01006.1	sp|Q9M069|E137_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 7	IPR012946 (X8 domain)	
Niben101Scf05417g01002.1	gb|AES80133.2|	***-	Ripening related protein family [Medicago truncatula]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf04197g01014.1	AT5G55690.1	*-*-	MADS-box transcription factor family protein LENGTH=277	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf06387g02005.1			Unknown protein		
Niben101Scf01358g00001.1	emb|CDX81689.1|	***-	BnaC08g39120D [Brassica napus]		
Niben101Scf06556g11022.1	AT3G06810.1	****	acyl-CoA dehydrogenase-related LENGTH=824	IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain), IPR011009 (Protein kinase-like domain), IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal)	GO:0003995 (acyl-CoA dehydrogenase activity), GO:0008152 (metabolic process), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05948g03019.1	ref|XP_002522268.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF40126.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00367g08003.1			Unknown protein		
Niben101Scf06976g05004.1	sp|Q98I99|MNTH_RHILO	*-**	Divalent metal cation transporter MntH	IPR001046 (NRAMP family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03951g00002.1	sp|O22131|LBD18_ARATH	***-	LOB domain-containing protein 18	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf11751g00005.1	sp|Q5REW9|ANR27_PONAB	*-*-	Ankyrin repeat domain-containing protein 27	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf02015g02012.1	gb|KEH24444.1|	--*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf00530g04001.1	sp|Q835R5|DNAJ_ENTFA	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf01124g08008.1	sp|Q8VZR7|PTR30_ARATH	***-	Protein NRT1/ PTR FAMILY 5.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf18643g00005.1			Unknown protein		
Niben101Scf07231g04013.1	AT3G29010.1	*-*-	Biotin/lipoate A/B protein ligase family LENGTH=262		
Niben101Scf03734g02011.1	sp|O59648|GLNA_METMP	****	Glutamine synthetase	IPR006992 (Amidohydrolase 2), IPR008147 (Glutamine synthetase, beta-Grasp), IPR014746 (Glutamine synthetase/guanido kinase, catalytic domain)	GO:0003824 (catalytic activity), GO:0004356 (glutamate-ammonia ligase activity), GO:0006542 (glutamine biosynthetic process), GO:0006807 (nitrogen compound metabolic process), GO:0008152 (metabolic process)
Niben101Scf07241g00014.1	emb|CDY37088.1|	***-	BnaA04g26660D [Brassica napus]	IPR008511 (Protein BYPASS-related)	
Niben101Scf02891g00010.1	sp|Q9ASU7|PPAN_ARATH	***-	Peter Pan-like protein	IPR007109 (Brix domain)	
Niben101Scf06913g00002.1	sp|Q6DGG0|PPID_RAT	--*-	Peptidyl-prolyl cis-trans isomerase D	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03662g00006.1	AT2G26150.1	*-**	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03046g01004.1	sp|Q9LTH8|ACH11_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 11	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf11401g01016.1	sp|Q08CY1|KLH22_XENTR	*-*-	Kelch-like protein 22	IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf09367g00003.1	sp|Q76CU2|PDR1_TOBAC	*-*-	Pleiotropic drug resistance protein 1		
Niben101Scf10718g00001.1	sp|Q8C5L3|CNOT2_MOUSE	*-**	CCR4-NOT transcription complex subunit 2	IPR007282 (NOT2/NOT3/NOT5)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf14323g02018.1	emb|CDX74528.1|	*-*-	BnaA04g08610D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf00525g03002.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02525g04004.1	AT4G14310.2	*-*-	Transducin/WD40 repeat-like superfamily protein LENGTH=920	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily)	
Niben101Scf02128g00016.1	ref|NP_001151149.1|	*-**	metal ion binding protein [Zea mays] gb|ACG41784.1| metal ion binding protein [Zea mays]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf04174g03012.1	gb|KEH38398.1|	*-*-	triose-phosphate transporter family protein [Medicago truncatula]		
Niben101Scf07409g00009.1	sp|B1MAF7|NUON_MYCA9	--*-	NADH-quinone oxidoreductase subunit N		
Niben101Scf00486g03001.1	sp|O04940|CDS1_SOLTU	****	Phosphatidate cytidylyltransferase	IPR000374 (Phosphatidate cytidylyltransferase)	GO:0004605 (phosphatidate cytidylyltransferase activity), GO:0016020 (membrane), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04133g01004.1	sp|Q9LYZ9|PP362_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR004331 (SPX, N-terminal), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08206g02016.1	AT2G46690.1	***-	SAUR-like auxin-responsive protein family LENGTH=121	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00870g15025.1	sp|Q9FNA9|PDAT1_ARATH	****	Phospholipid:diacylglycerol acyltransferase 1	IPR003386 (Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0008374 (O-acyltransferase activity)
Niben101Scf03398g06002.1	ref|NP_563722.1|	--*-	hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]	IPR028226 (Protein LIN37)	GO:0007049 (cell cycle), GO:0017053 (transcriptional repressor complex)
Niben101Scf07172g01015.1	AT3G19190.1	*-**	autophagy 2 LENGTH=1839	IPR015412 (Autophagy-related, C-terminal), IPR026849 (Autophagy-related protein 2)	GO:0006914 (autophagy)
Niben101Scf02085g04007.1	sp|P0CI03|PTR28_ARATH	*-*-	Protein NRT1/ PTR FAMILY 5.6	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05610g02005.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03500g02022.1	sp|P23433|E13D_TOBAC	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08179g02015.1	sp|D8VPP5|AL11A_OLEEU	*-**	Pectinesterase 1	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf00698g02020.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00726g02017.1	sp|Q6ZNW5|GDPP1_HUMAN	****	GDP-D-glucose phosphorylase 1	IPR026506 (GDP-L-galactose/GDP-D-glucose phosphorylase)	GO:0080048 (GDP-D-glucose phosphorylase activity)
Niben101Ctg06879g00004.1	sp|P10708|CB12_SOLLC	***-	Chlorophyll a-b binding protein 7, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf00586g00001.1	sp|A4FX98|GLMU_METM5	***-	Bifunctional protein GlmU	IPR001451 (Bacterial transferase hexapeptide repeat), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf03262g02006.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07462g01001.1	sp|O65786|C71B4_ARATH	***-	Cytochrome P450 71B4	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07825g04015.1	AT1G05780.1	***-	Vacuolar ATPase assembly integral membrane protein VMA21-like domain LENGTH=106	IPR019013 (Vacuolar ATPase assembly integral membrane protein VMA21-like domain)	
Niben101Scf02566g03004.1	AT2G25780.1	***-	Protein of unknown function (DUF1677) LENGTH=153	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf02772g01013.1	sp|P48368|CRTE_CYAPA	*-*-	Geranylgeranyl diphosphate synthase	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf10015g09022.1	AT2G39430.1	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=322	IPR004265 (Plant disease resistance response protein)	
Niben101Scf00218g01010.1	AT5G46920.1	*-*-	Intron maturase, type II family protein LENGTH=735	IPR000477 (Reverse transcriptase domain)	
Niben101Scf05576g00006.1	emb|CDX78075.1|	*-*-	BnaA09g32700D [Brassica napus]		
Niben101Scf00430g00002.1	sp|Q0WPW4|ACCO5_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase 5	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03373g04002.1	AT3G14310.1	*-**	pectin methylesterase 3 LENGTH=592	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf04554g04004.1	gb|KEH31981.1|	*-**	plant calmodulin-binding-like protein [Medicago truncatula]	IPR012417 (Calmodulin-binding domain, plant)	GO:0005516 (calmodulin binding)
Niben101Scf03882g01003.1	sp|Q9LXD8|HEC3_ARATH	*-*-	Transcription factor HEC3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04240g02011.1	sp|P42774|GBF1_ARATH	****	G-box-binding factor 1	IPR004827 (Basic-leucine zipper domain), IPR012900 (G-box binding, MFMR)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06584g01002.1	sp|Q9ZPY7|XPO2_ARATH	*-*-	Exportin-2	IPR005043 (CAS/CSE, C-terminal), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf04316g09007.1	AT1G66340.1	****	Signal transduction histidine kinase, hybrid-type, ethylene sensor LENGTH=738	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily), IPR029016 (GAF domain-like)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00109g00003.1	sp|Q01593|ABI3_ARATH	*-*-	B3 domain-containing transcription factor ABI3	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf03693g01008.1	sp|Q1RHB9|SDHA_RICBR	***-	Succinate dehydrogenase flavoprotein subunit	IPR014006 (Succinate dehydrogenase/fumarate reductase, flavoprotein subunit), IPR015939 (Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal), IPR027477 (Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain)	GO:0006099 (tricarboxylic acid cycle), GO:0016491 (oxidoreductase activity), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0022900 (electron transport chain), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03307g05001.1	AT4G29230.1	***-	NAC domain containing protein 75 LENGTH=498	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01005g04005.1	sp|Q9JZ77|RIBB_NEIMB	****	3,4-dihydroxy-2-butanone 4-phosphate synthase	IPR000422 (3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB), IPR000926 (GTP cyclohydrolase II, RibA), IPR016299 (Riboflavin biosynthesis protein RibBA)	GO:0003935 (GTP cyclohydrolase II activity), GO:0008686 (3,4-dihydroxy-2-butanone-4-phosphate synthase activity), GO:0009231 (riboflavin biosynthetic process)
Niben101Scf09130g00009.1	sp|O22822|U74F2_ARATH	--*-	UDP-glycosyltransferase 74F2		
Niben101Scf01300g00003.1			Unknown protein		
Niben101Scf00491g02001.1	emb|CDY19372.1|	***-	BnaC05g08810D [Brassica napus]		
Niben101Scf12270g03006.1	emb|CAA62734.1|	*-*-	beta-fructofuranosidase (invertase) [Solanum lycopersicum]	IPR001362 (Glycoside hydrolase, family 32), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03462g04002.1	sp|O42993|FKBP_SCHPO	*-*-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR011990 (Tetratricopeptide-like helical domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0005515 (protein binding), GO:0006457 (protein folding)
Niben101Ctg15612g00002.1	sp|Q9SA82|BH052_ARATH	***-	Transcription factor bHLH52	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01327g01010.1	dbj|BAB11644.1|	*-**	MADS box transcription factor-like protein [Arabidopsis thaliana]	IPR002487 (Transcription factor, K-box), IPR021737 (Bacteriophage phiKZ, Orf197)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05872g05001.1	sp|P93751|ZFP8_ARATH	***-	Zinc finger protein 8	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf14194g00004.1	sp|A8ALC3|GLND_CITK8	--*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf13289g02001.1			Unknown protein		
Niben101Scf00679g03008.1	AT1G05270.1	***-	TraB family protein LENGTH=371	IPR002816 (Pheromone shutdown, TraB)	
Niben101Scf04901g00021.1	sp|O23708|PSA2A_ARATH	****	Proteasome subunit alpha type-2-A	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf00870g01001.1			Unknown protein		
Niben101Scf00167g05005.1	ref|NP_001045217.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf04636g00005.1	gb|AGW30201.1|	*-**	alcohol acyl transferase [Malus domestica]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf08806g01004.1	gb|AEX59924.1|	--*-	MYB family transcription factor [Oryza rufipogon]		
Niben101Scf02658g04011.1	AT2G21100.1	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=187	IPR004265 (Plant disease resistance response protein)	
Niben101Scf01154g14012.1	AT2G37420.1	****	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00369g09019.1	sp|O82631|CAPZA_ARATH	****	F-actin-capping protein subunit alpha	IPR002189 (F-actin-capping protein subunit alpha)	GO:0008290 (F-actin capping protein complex), GO:0051016 (barbed-end actin filament capping)
Niben101Scf11264g01033.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07086g00015.1	AT1G02970.1	****	WEE1 kinase homolog LENGTH=500	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00725g02010.1	sp|Q93ZH0|LYM1_ARATH	--*-	LysM domain-containing GPI-anchored protein 1		
Niben101Scf03494g12002.1	ref|XP_002532342.1|	****	nucleic acid binding protein, putative [Ricinus communis] gb|EEF30044.1| nucleic acid binding protein, putative [Ricinus communis]	IPR000467 (G-patch domain), IPR025239 (Domain of unknown function DUF4187)	GO:0003676 (nucleic acid binding)
Niben101Scf09223g00001.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04607g06009.1	sp|Q38914|ANT_ARATH	*-*-	AP2-like ethylene-responsive transcription factor ANT		
Niben101Scf06529g02007.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf05395g02001.1	AT1G80370.1	****	Cyclin A2;4 LENGTH=461	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf12102g01001.1	sp|Q0TRT3|ATKB_CLOP1	***-	Potassium-transporting ATPase B chain	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0005507 (copper ion binding), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf02069g02006.1	ref|XP_002513591.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF48994.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06369g04009.1	AT4G11570.1	****	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=373	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf00611g08017.1			Unknown protein		
Niben101Scf10885g00016.1	sp|Q9UBB9|TFP11_HUMAN	***-	Tuftelin-interacting protein 11	IPR000467 (G-patch domain), IPR022159 (Tuftelin interacting protein, N-terminal domain), IPR022783 (GC-rich sequence DNA-binding factor domain), IPR024933 (Septin and tuftelin interacting protein)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf12148g01006.1	AT3G03340.1	***-	LUC7 related protein LENGTH=402	IPR004882 (Luc7-related)	GO:0003729 (mRNA binding), GO:0005685 (U1 snRNP), GO:0006376 (mRNA splice site selection)
Niben101Scf07678g06002.1	emb|CDO45710.1|	***-	Protein glycosylationmyb-like TTH transcriptional regulator, partial [Leucadendron galpinii]	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf09170g01017.1	sp|Q1RJT3|ODP2_RICBR	****	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	IPR006257 (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0004742 (dihydrolipoyllysine-residue acetyltransferase activity), GO:0006090 (pyruvate metabolic process), GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups), GO:0045254 (pyruvate dehydrogenase complex)
Niben101Scf20773g01021.1	sp|P55088|AQP4_MOUSE	***-	Aquaporin-4	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf08921g01012.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf14939g01018.1	sp|Q96509|PER55_ARATH	****	Peroxidase 55	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05152g01001.1	sp|Q9LSE7|B561C_ARATH	*-*-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain)	
Niben101Scf02868g05009.1	AT4G31420.2	****	Zinc finger protein 622 LENGTH=405	IPR003604 (Zinc finger, U1-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf12746g00014.1	sp|P0CC80|NU2C1_LACSA	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic		
Niben101Scf17339g00003.1	sp|O23970|GPX1_HELAN	****	Glutathione peroxidase 1	IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029759 (Glutathione peroxidase active site), IPR029760 (Glutathione peroxidase conserved site)	GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process)
Niben101Scf05032g00003.1	sp|Q9TVU5|RAB1_THEPA	*-*-	Ras-related protein Rab-1	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf16114g00007.1	gb|ACF19789.1|	--*-	NAC transcription factor [Nicotiana tabacum]		
Niben101Scf05378g00019.1	sp|O94481|TFC5_SCHPO	*-*-	Transcription factor TFIIIB component B''	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf15995g02008.1	sp|B2U2Q6|RSMB_SHIB3	--*-	Ribosomal RNA small subunit methyltransferase B		
Niben101Scf05956g00005.1	sp|Q7T0B0|STK40_XENLA	*-**	Serine/threonine-protein kinase 40	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02854g09009.1	sp|P51612|XPC_MOUSE	****	DNA repair protein complementing XP-C cells homolog	IPR002931 (Transglutaminase-like), IPR004583 (DNA repair protein Rad4)	GO:0003677 (DNA binding), GO:0003684 (damaged DNA binding), GO:0005634 (nucleus), GO:0006289 (nucleotide-excision repair)
Niben101Scf06009g00023.1	sp|Q2QS14|UGDH4_ORYSJ	****	UDP-glucose 6-dehydrogenase 4	IPR017476 (UDP-glucose/GDP-mannose dehydrogenase)	GO:0003979 (UDP-glucose 6-dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00332g12009.1	sp|Q54UU1|TPPC4_DICDI	***-	Trafficking protein particle complex subunit 4	IPR007233 (Sybindin-like protein)	GO:0005801 (cis-Golgi network), GO:0006810 (transport), GO:0006888 (ER to Golgi vesicle-mediated transport)
Niben101Scf02074g02060.1			Unknown protein		
Niben101Scf06909g04044.1	sp|Q9SUP7|HMGB6_ARATH	--*-	High mobility group B protein 6		
Niben101Scf10199g00005.1	sp|P82787|DEF19_ARATH	***-	Defensin-like protein 19	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf02227g06026.1	sp|Q9SKQ4|PP167_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00578g03002.1	sp|Q9LSQ4|GH36_ARATH	***-	Indole-3-acetic acid-amido synthetase GH3.6	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf01687g01011.1	ref|WP_026785322.1|	--*-	MULTISPECIES: hypothetical protein [Planktothrix]		
Niben101Scf06639g01007.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR015757 (Calcineurin B protein)	GO:0005509 (calcium ion binding)
Niben101Scf01863g01008.1			Unknown protein		
Niben101Scf14041g01007.1	gb|AES72618.2|	***-	auxin-independent growth promoter-like protein [Medicago truncatula]	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf12515g00026.1	gb|AAF76312.1|AF220603_4	--*-	Prf [Solanum lycopersicum]		
Niben101Scf01399g00008.1	AT1G13810.1	***-	Restriction endonuclease, type II-like superfamily protein LENGTH=303	IPR011335 (Restriction endonuclease  type II-like)	GO:0003677 (DNA binding), GO:0004518 (nuclease activity)
Niben101Scf08833g03006.1	sp|Q9SMU4|U496N_ARATH	***-	UPF0496 protein	IPR007749 (Protein of unknown function DUF677)	
Niben101Scf02829g06014.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf00761g03008.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf11999g00007.1	gb|ACA63883.1|	*-**	vacuolar proton-inorganic pyrophosphatase [Hordeum vulgare]	IPR004131 (Pyrophosphate-energised proton pump)	GO:0004427 (inorganic diphosphatase activity), GO:0009678 (hydrogen-translocating pyrophosphatase activity), GO:0015992 (proton transport), GO:0016020 (membrane)
Niben101Scf04663g05017.1			Unknown protein		
Niben101Scf02541g10026.1	AT1G30860.1	*-*-	RING/U-box superfamily protein LENGTH=730		
Niben101Scf00854g03013.1	AT2G07772.1	*-*-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=179		
Niben101Scf07972g01001.1			Unknown protein		
Niben101Scf00640g00011.1	sp|P81898|PNAA_PRUDU	***-	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A	IPR021102 (Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A)	
Niben101Scf01842g03001.1	sp|Q08891|FACR2_ARATH	*-**	Fatty acyl-CoA reductase 2	IPR016040 (NAD(P)-binding domain), IPR026055 (Fatty acyl-CoA reductase)	GO:0080019 (fatty-acyl-CoA reductase (alcohol-forming) activity)
Niben101Scf00035g01012.1	sp|Q5ZK33|LETM1_CHICK	*-*-	LETM1 and EF-hand domain-containing protein 1, mitochondrial	IPR011685 (LETM1-like), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03326g05011.1	sp|Q84UQ3|C3H56_ORYSJ	***-	Zinc finger CCCH domain-containing protein 56	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf04104g03001.1	AT2G44810.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=357	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf11705g01001.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf29115g00001.1	sp|Q06H01|PSBC_DRIGR	*-**	Photosystem II CP43 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf01211g00001.1	sp|Q9LQL2|PTR14_ARATH	***-	Protein NRT1/ PTR FAMILY 7.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03028g03004.1	AT4G34860.1	*-*-	Plant neutral invertase family protein LENGTH=571	IPR024746 (Glycosyl hydrolase family 100)	GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf31568g00007.1	gb|KEH16339.1|	*-**	myb-like DNA-binding domain, shaqkyf class protein [Medicago truncatula]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf04006g00008.1	AT5G48340.1	***-	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). LENGTH=510		
Niben101Scf01460g03010.1			Unknown protein		
Niben101Scf02541g01006.1			Unknown protein		
Niben101Scf02475g02004.1	sp|Q4WJS4|PLPL_ASPFU	***-	Patatin-like phospholipase domain-containing protein	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase), IPR021771 (Triacylglycerol lipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf07498g02020.1	gb|ACZ64225.1|	***-	RPM1 interacting protein 4 transcript 2 [Lactuca saligna]	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf02041g01018.1	AT4G35630.1	****	phosphoserine aminotransferase LENGTH=430	IPR015424 (Pyridoxal phosphate-dependent transferase), IPR022278 (Phosphoserine aminotransferase)	GO:0003824 (catalytic activity), GO:0004648 (O-phospho-L-serine:2-oxoglutarate aminotransferase activity), GO:0006564 (L-serine biosynthetic process), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03923g14010.1	sp|Q1RJY5|UBIE_RICBR	*-**	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf00920g05006.1	sp|Q8R314|S35F5_MOUSE	*-*-	Solute carrier family 35 member F5	IPR009262 (Solute carrier family 35 member SLC35F1/F2/F6)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf05447g02004.1	sp|Q5A4E2|DED1_CANAL	*-**	ATP-dependent RNA helicase DED1	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01154g19004.1	emb|CDP85485.1|	-***	uroporphyrinogen-III synthase [Mycobacterium farcinogenes]	IPR003754 (Tetrapyrrole biosynthesis, uroporphyrinogen III synthase)	GO:0004852 (uroporphyrinogen-III synthase activity), GO:0033014 (tetrapyrrole biosynthetic process)
Niben101Scf00607g03014.1	gb|AAT39951.2|	--*-	Disease resistance protein, putative [Solanum demissum]		
Niben101Scf00995g00005.1	AT5G60680.1	***-	Protein of unknown function, DUF584 LENGTH=163	IPR007608 (Senescence regulator S40)	
Niben101Scf00231g07027.1	sp|P43212|PGLR2_CRYJA	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08947g01012.1	sp|F4JN00|CSTR4_ARATH	****	CMP-sialic acid transporter 4	IPR004689 (UDP-galactose transporter), IPR007271 (Nucleotide-sugar transporter)	GO:0000139 (Golgi membrane), GO:0005338 (nucleotide-sugar transmembrane transporter activity), GO:0005351 (sugar:proton symporter activity), GO:0008643 (carbohydrate transport), GO:0015780 (nucleotide-sugar transport), GO:0016021 (integral component of membrane)
Niben101Scf00176g00003.1	AT1G61667.1	***-	Protein of unknown function, DUF538 LENGTH=156	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf01975g03003.1	sp|Q8L868|E1311_ARATH	***-	Glucan endo-1,3-beta-glucosidase 11	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07000g01004.1	sp|E0X9N4|C3H69_ARATH	****	Zinc finger CCCH domain-containing protein 69	IPR000571 (Zinc finger, CCCH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf00781g03011.1	sp|Q7XJS0|ASHR1_ARATH	***-	Histone-lysine N-methyltransferase ASHR1	IPR001214 (SET domain), IPR002893 (Zinc finger, MYND-type)	GO:0005515 (protein binding)
Niben101Scf00486g01019.1	AT2G24420.1	*-*-	DNA repair ATPase-related LENGTH=440		
Niben101Scf14587g00009.1	sp|Q9ZPE7|EXO_ARATH	*-*-	Protein EXORDIUM	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf13816g00005.1	AT3G25780.1	***-	allene oxide cyclase 3 LENGTH=258	IPR009410 (Allene oxide cyclase)	GO:0009507 (chloroplast), GO:0016853 (isomerase activity)
Niben101Scf01214g02005.1	sp|Q39214|RPM1_ARATH	--*-	Disease resistance protein RPM1		
Niben101Scf12160g00012.1	sp|Q8LDB8|RING2_ARATH	--*-	E3 ubiquitin-protein ligase	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf00722g00008.1	sp|B4RK29|PNP_NEIG2	--*-	Polyribonucleotide nucleotidyltransferase	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf07713g00005.1	sp|Q9LUB9|Y5813_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf01051g03006.1	sp|Q4WD95|SEC16_ASPFU	*-**	COPII coat assembly protein sec16	IPR024340 (Sec16, central conserved domain), IPR024880 (COPII coat assembly protein, Sec16)	GO:0048208 (COPII vesicle coating)
Niben101Scf14922g00027.1	AT3G61850.4	****	Dof-type zinc finger DNA-binding family protein LENGTH=324	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03104g03020.1	sp|O49710|HS154_ARATH	***-	15.4 kDa class V heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf02757g04025.1	gb|AFL37677.1|	--*-	LFI-1, partial [Caenorhabditis remanei]		
Niben101Scf05226g03008.1			Unknown protein		
Niben101Scf07757g00004.1			Unknown protein		
Niben101Scf01758g00008.1	sp|Q6GM06|OTU6B_XENLA	***-	OTU domain-containing protein 6B	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf08331g00007.1			Unknown protein		
Niben101Scf04995g07008.1	emb|CAE04909.2|	--*-	OSJNBa0082E08.6 [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf04370g00018.1	ref|XP_003610136.1|	****	Mitochondrial outer membrane protein porin [Medicago truncatula] gb|AES92333.1| porin/voltage-dependent anion-selective channel protein [Medicago truncatula]	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0055085 (transmembrane transport)
Niben101Scf02699g02014.1	sp|A5D5K0|EFTU1_PELTS	****	Elongation factor Tu 1	IPR004541 (Translation elongation factor EFTu/EF1A, bacterial/organelle), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006414 (translational elongation)
Niben101Scf10158g01039.1	AT1G32740.1	***-	SBP (S-ribonuclease binding protein) family protein LENGTH=312		
Niben101Scf03419g12003.1			Unknown protein		
Niben101Scf06793g00009.1			Unknown protein		
Niben101Scf02737g03003.1	sp|P13853|HS17C_ARATH	***-	17.6 kDa class I heat shock protein 3	IPR008978 (HSP20-like chaperone)	
Niben101Scf08519g02002.1	sp|Q5REC0|ZC21A_PONAB	--*-	Zinc finger C2HC domain-containing protein 1A	IPR026319 (Zinc finger C2HC domain-containing protein)	
Niben101Scf08479g00012.1			Unknown protein		
Niben101Scf06782g01002.1			Unknown protein		
Niben101Scf02048g01003.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00370g04028.1	AT5G27490.1	****	Integral membrane Yip1 family protein LENGTH=282	IPR006977 (Yip1 domain)	GO:0016020 (membrane)
Niben101Scf05183g09003.1	AT3G59910.1	***-	Ankyrin repeat family protein LENGTH=611	IPR020683 (Ankyrin repeat-containing domain)	
Niben101Scf10152g02004.1	AT3G11000.2	*-*-	DCD (Development and Cell Death) domain protein LENGTH=607	IPR013989 (Development/cell death domain)	
Niben101Scf12924g00003.1	AT5G42090.1	*-*-	Lung seven transmembrane receptor family protein LENGTH=439	IPR009637 (Transmembrane receptor, eukaryota)	GO:0016021 (integral component of membrane)
Niben101Scf02738g06013.1	AT5G38840.1	***-	SMAD/FHA domain-containing protein LENGTH=735	IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf03885g05006.1	sp|Q86H98|CHMP4_DICDI	***-	Charged multivesicular body protein 4	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf11084g01007.1	ref|XP_002533844.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF28535.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06349g01001.1	emb|CDY44160.1|	***-	BnaA09g30920D [Brassica napus]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf05442g03015.1	AT3G10340.1	****	phenylalanine ammonia-lyase 4 LENGTH=707	IPR001106 (Aromatic amino acid lyase), IPR023144 (Phenylalanine ammonia-lyase, shielding domain), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0006559 (L-phenylalanine catabolic process), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf16716g00005.1	AT1G65790.1	*-**	receptor kinase 1 LENGTH=843	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00761g05010.1	gb|AGY62799.1|	***-	orf148 (mitochondrion) [Eruca vesicaria subsp. sativa] gb|AHY20342.1| hypothetical protein (mitochondrion) (mitochondrion) [Brassica juncea var. tumida] gb|AIC83308.1| orf148 (mitochondrion) [Brassica oleracea var. botrytis]		
Niben101Scf09025g01006.1	AT5G50380.1	****	exocyst subunit exo70 family protein F1 LENGTH=683	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf04284g00002.1			Unknown protein		
Niben101Scf10157g05011.1	sp|Q96SE0|ABHD1_HUMAN	*-*-	Abhydrolase domain-containing protein 1	IPR003675 (CAAX amino terminal protease), IPR029058 (Alpha/Beta hydrolase fold)	GO:0016020 (membrane)
Niben101Scf00075g00010.1	sp|Q42963|PMT1_TOBAC	*-*-	Putrescine N-methyltransferase 1		
Niben101Scf02090g07014.1	sp|G5CEW6|IF4G_WHEAT	*-*-	Eukaryotic translation initiation factor 4G	IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04765g01002.1	sp|Q940P5|TET19_ARATH	***-	Tetraspanin-19	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf00898g02015.1	emb|CDY14706.1|	***-	BnaC05g19630D [Brassica napus]	IPR001878 (Zinc finger, CCHC-type), IPR007679 (Protein of unknown function DUF569), IPR008999 (Actin cross-linking)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf05381g00005.1	sp|Q9MA49|JAL2_ARATH	*-*-	Jacalin-related lectin 2	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf01154g18013.1	sp|Q8T135|KIF5_DICDI	*-**	Kinesin-related protein 5	IPR000299 (FERM domain), IPR000857 (MyTH4 domain), IPR001752 (Kinesin motor domain), IPR011254 (Prismane-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0005856 (cytoskeleton), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf11751g01002.1	sp|O04375|2A5A_ARATH	****	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf00719g01003.1	AT1G28240.1	***-	Protein of unknown function (DUF616) LENGTH=581	IPR006852 (Protein of unknown function DUF616)	
Niben101Scf06435g03025.1	sp|Q9ZTA1|AOP3C_ARATH	*-*-	2-oxoglutarate-dependent dioxygenase AOP3	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf00821g12006.1	sp|Q9M2Z4|MSBP2_ARATH	*-*-	Membrane steroid-binding protein 2	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	
Niben101Scf01812g01006.1			Unknown protein		
Niben101Scf04011g08007.1			Unknown protein		
Niben101Scf02387g00012.1	sp|Q15042|RB3GP_HUMAN	*-**	Rab3 GTPase-activating protein catalytic subunit	IPR026147 (Rab3 GTPase-activating protein catalytic subunit)	GO:0005097 (Rab GTPase activator activity)
Niben101Scf01548g00002.1	sp|P27494|CB23_TOBAC	***-	Chlorophyll a-b binding protein 36, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf10560g00008.1	sp|Q3KRG3|TSR2_DANRE	***-	Pre-rRNA-processing protein TSR2 homolog	IPR019398 (Pre-rRNA-processing protein TSR2)	
Niben101Scf00483g02004.1	dbj|BAH57854.1|	*-*-	tracheary element differentiation-related 7A [Zinnia violacea]		
Niben101Scf00994g06006.1	sp|Q12873|CHD3_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 3	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR009057 (Homeodomain-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Ctg14682g00001.1	emb|CDY58300.1|	*-*-	BnaA06g38740D [Brassica napus]	IPR021584 (Thylakoid soluble phosphoprotein TSP9)	
Niben101Scf00144g04001.1	sp|A2X1A1|ARFF_ORYSI	*-*-	Auxin response factor 6	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf03600g03011.1	sp|P25076|CY11_SOLTU	****	Cytochrome c1-1, heme protein, mitochondrial	IPR002326 (Cytochrome c1)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf07775g02006.1	sp|P55200|KMT2A_MOUSE	*-**	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR003616 (Post-SET domain), IPR006560 (AWS domain), IPR011124 (Zinc finger, CW-type)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0018024 (histone-lysine N-methyltransferase activity)
Niben101Scf08844g00004.1	AT5G13490.1	***-	ADP/ATP carrier 2 LENGTH=385	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf01804g00061.1			Unknown protein		
Niben101Scf07440g00009.1	AT5G08350.1	***-	GRAM domain-containing protein / ABA-responsive protein-related LENGTH=222	IPR004182 (GRAM domain)	
Niben101Scf03012g00001.1	AT4G14420.1	*-*-	HR-like lesion-inducing protein-related LENGTH=158	IPR008637 (HR-like lesion-inducer)	
Niben101Scf04706g00001.1	sp|Q56X46|MSL2_ARATH	*-*-	Mechanosensitive ion channel protein 2, chloroplastic		
Niben101Scf13411g00007.1	sp|Q8GYP6|PPR49_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00863g01021.1	gb|AAF81293.1|AC027656_10	--*-	Strong similarity to a mutator-like transposase from Arabidopsis thaliana gb|AC006067. It		
Niben101Scf04941g03018.1	sp|Q9U7D0|H4_MASBA	***-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf01061g08031.1	AT5G49690.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf09527g01015.1	sp|Q2JN82|PSBX_SYNJB	--**	Photosystem II reaction center X protein	IPR009518 (Photosystem II PsbX)	GO:0009523 (photosystem II), GO:0015979 (photosynthesis), GO:0016020 (membrane)
Niben101Scf07616g02006.1	AT5G08630.1	***-	DDT domain-containing protein LENGTH=723	IPR013136 (WSTF/Acf1/Cbp146), IPR018501 (DDT domain superfamily), IPR028941 (WHIM2 domain)	
Niben101Scf00324g01020.1			Unknown protein		
Niben101Scf01259g00007.1	gb|AES98123.2|	*-*-	auxin-independent growth promoter-like protein [Medicago truncatula]		
Niben101Scf04800g00004.1	ref|XP_002510336.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF52523.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf05025g06014.1	sp|O84089|MALQ_CHLTR	*-**	4-alpha-glucanotransferase	IPR003385 (Glycoside hydrolase, family 77), IPR013783 (Immunoglobulin-like fold), IPR013784 (Carbohydrate-binding-like fold), IPR017853 (Glycoside hydrolase superfamily)	GO:0004134 (4-alpha-glucanotransferase activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding), GO:2001070 (starch binding)
Niben101Scf12360g00006.1	sp|Q03K19|SYFA_STRTD	****	Phenylalanine--tRNA ligase alpha subunit	IPR002319 (Phenylalanyl-tRNA synthetase), IPR005121 (Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding)	GO:0000049 (tRNA binding), GO:0000287 (magnesium ion binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004826 (phenylalanine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006432 (phenylalanyl-tRNA aminoacylation), GO:0008033 (tRNA processing), GO:0043039 (tRNA aminoacylation)
Niben101Scf00941g03012.1			Unknown protein		
Niben101Scf00046g02010.1	AT5G50180.1	****	Protein kinase superfamily protein LENGTH=346	IPR011009 (Protein kinase-like domain), IPR015784 (Putative serine/threonine-protein kinase, plants)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg13885g00001.1	gb|AID55065.1|	*-*-	disease resistance protein, partial [Solanum habrochaites]	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf06825g00036.1	AT4G39630.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=233		
Niben101Scf15536g02004.1	sp|O64407|AMYB_VIGUN	****	Beta-amylase	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf03129g07005.1	sp|Q8IUS5|EPHX4_HUMAN	*-*-	Epoxide hydrolase 4	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf10881g00020.1	ref|NP_001100354.1|	--*-	triggering receptor expressed on myeloid cells 2 precursor [Rattus norvegicus] gb|EDM18925.1| triggering receptor expressed on myeloid cells 2 (predicted), isoform CRA_a [Rattus norvegicus]		
Niben101Scf00929g03016.1	sp|P48368|CRTE_CYAPA	***-	Geranylgeranyl diphosphate synthase	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf04140g01018.1	sp|Q9LPU9|VITH1_ARATH	***-	Vacuolar iron transporter homolog 1	IPR008217 (Ccc1 family)	
Niben101Scf11169g00006.1			Unknown protein		
Niben101Scf02847g00005.1	sp|Q7W515|HEMH_BORPA	--*-	Ferrochelatase		
Niben101Scf02821g03018.1	AT1G32310.1	***-	unknown protein; Has 28 Blast hits to 28 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=100		
Niben101Scf00343g01004.1	AT1G21150.1	****	Mitochondrial transcription termination factor family protein LENGTH=390	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07113g01001.1	sp|Q9T0D6|PP306_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf09209g01006.1	AT2G21990.1	***-	Protein of unknown function, DUF617 LENGTH=252	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf06385g00014.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf00063g10017.1			Unknown protein		
Niben101Scf01658g02009.1	gb|AIT42219.1|	-**-	metallocarboxypeptidase inhibitor [Solanum tuberosum]	IPR004231 (Carboxypeptidase A inhibitor-like)	
Niben101Scf00568g04018.1	sp|Q49KW6|RPOA_EUCGG	*-**	DNA-directed RNA polymerase subunit alpha	IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain), IPR011260 (RNA polymerase, alpha subunit, C-terminal)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf34386g00009.1	sp|Q28G05|SYF2_XENTR	***-	Pre-mRNA-splicing factor syf2	IPR013260 (mRNA splicing factor SYF2)	
Niben101Scf07854g00007.1	sp|Q9FJF4|MBD7_ARATH	*-**	Methyl-CpG-binding domain-containing protein 7	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf03422g00005.1	sp|B5EZJ2|RBN_SALA4	*-*-	Ribonuclease BN	IPR001279 (Beta-lactamase-like)	
Niben101Scf03545g00005.1	AT5G59390.1	*-*-	XH/XS domain-containing protein LENGTH=561	IPR005380 (XS domain)	GO:0031047 (gene silencing by RNA)
Niben101Scf10409g00001.1			Unknown protein		
Niben101Scf00747g12033.1	sp|Q6NQ87|CRK22_ARATH	--*-	Cysteine-rich receptor-like protein kinase 22	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00304g07020.1	AT3G49400.1	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=892	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR024761 (Transcription factor IIIC, 90kDa subunit, N-terminal)	GO:0005515 (protein binding)
Niben101Scf04329g06012.1	sp|Q9FF58|FBD30_ARATH	*-*-	FBD-associated F-box protein	IPR006566 (FBD domain)	
Niben101Scf06562g01014.1	sp|Q8BFT6|JMJD4_MOUSE	***-	JmjC domain-containing protein 4	IPR003347 (JmjC domain)	
Niben101Scf01241g04005.1	AT1G67140.3	*-*-	HEAT repeat-containing protein LENGTH=2223		
Niben101Scf07695g00006.1	AT4G38040.1	***-	Exostosin family protein LENGTH=425	IPR004263 (Exostosin-like)	
Niben101Scf03703g02007.1	sp|Q4PHU9|DBP2_USTMA	****	ATP-dependent RNA helicase DBP2	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01764g02020.1	sp|Q9SLG0|NFYB1_ARATH	***-	Nuclear transcription factor Y subunit B-1	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf12308g00007.1	sp|A4YKE0|ATPB_BRASO	****	ATP synthase subunit beta	IPR005722 (ATPase, F1 complex, beta subunit), IPR020971 (ATP synthase, F1 beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000275 (mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)), GO:0005524 (ATP binding), GO:0006200 (ATP catabolic process), GO:0006754 (ATP biosynthetic process), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0015992 (proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0016887 (ATPase activity), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0046034 (ATP metabolic process), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Scf08783g01002.1	gb|ADM94222.1|	*-*-	TGN-localized SYP41-interacting protein [Arabidopsis thaliana]		
Niben101Scf03528g00003.1	sp|P54968|ILR1_ARATH	--*-	IAA-amino acid hydrolase ILR1		
Niben101Scf01497g00001.1	sp|A2YH60|CCB22_ORYSI	****	Cyclin-B2-2	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf04847g03019.1	sp|P0CS15|DDI1_CRYNB	*-*-	DNA damage-inducible protein 1	IPR009060 (UBA-like), IPR021109 (Aspartic peptidase domain), IPR029071 (Ubiquitin-related domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf09152g00002.1	tpg|DAA60489.1|	--*-	TPA: hypothetical protein ZEAMMB73_577262 [Zea mays]		
Niben101Scf06408g04006.1	gb|KEH23195.1|	***-	plant/T10O8-60 protein [Medicago truncatula]		
Niben101Scf01230g02020.1	AT1G72330.3	***-	alanine aminotransferase 2 LENGTH=553	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf06155g01001.1	gb|ADM21189.1|	*-*-	ankyrin repeat family protein [Arabidopsis thaliana]	IPR026961 (PGG domain)	
Niben101Scf02878g02005.1	sp|Q8JHV6|LAMB4_DANRE	--*-	Laminin subunit beta-4		
Niben101Scf01281g01002.1	ref|WP_032541751.1|	****	DNA primase [Bacteroides fragilis]	IPR006171 (Toprim domain), IPR007694 (DNA helicase, DnaB-like, C-terminal), IPR027032 (Twinkle-like protein), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003678 (DNA helicase activity), GO:0003697 (single-stranded DNA binding), GO:0005524 (ATP binding), GO:0006260 (DNA replication), GO:0043139 (5'-3' DNA helicase activity)
Niben101Ctg05879g00002.1	sp|O49255|NAC29_ARATH	-***	NAC transcription factor 29	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01756g00004.1	sp|Q32PD0|FCF1_BOVIN	***-	rRNA-processing protein FCF1 homolog	IPR006984 (rRNA-processing protein Fcf1/Utp23), IPR029060 (PIN domain-like)	GO:0032040 (small-subunit processome)
Niben101Scf05009g00012.1			Unknown protein		
Niben101Scf01485g00002.1	sp|Q503V9|ENDUB_DANRE	*-*-	Poly(U)-specific endoribonuclease-B	IPR018998 (Endoribonuclease XendoU)	GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf09548g00022.1	sp|Q2U0S9|MCD4_ASPOR	****	GPI ethanolamine phosphate transferase 1	IPR002591 (Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase), IPR007070 (GPI ethanolamine phosphate transferase 1)	GO:0003824 (catalytic activity), GO:0005789 (endoplasmic reticulum membrane), GO:0006506 (GPI anchor biosynthetic process), GO:0008152 (metabolic process), GO:0016740 (transferase activity)
Niben101Scf00872g01003.1	AT1G68670.1	*-*-	myb-like transcription factor family protein LENGTH=354	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf32089g00002.1	sp|B1NTR4|NU2C_TRACE	*-*-	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf00258g00015.1	sp|Q9H9E1|ANRA2_HUMAN	*-*-	Ankyrin repeat family A protein 2	IPR020683 (Ankyrin repeat-containing domain), IPR021789 (Potassium channel, plant-type)	GO:0005515 (protein binding)
Niben101Scf19261g00010.1	sp|Q5QZC0|BIOH_IDILO	***-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02793g26008.1	gb|AAG37449.1|	--*-	seed maturation protein LEA 4 [Glycine tomentella]	IPR005513 (Late embryogenesis abundant protein, LEA-25/LEA-D113)	GO:0009790 (embryo development)
Niben101Scf08874g01015.1	ref|WP_025787057.1|	***-	succinyldiaminopimelate aminotransferase [Vibrio parahaemolyticus]	IPR009770 (Domain of unknown function DUF1338)	
Niben101Scf08033g02011.1	sp|Q9SDZ9|PPAF2_IPOBA	****	Purple acid phosphatase 2	IPR003961 (Fibronectin type III), IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0005515 (protein binding), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf02749g02015.1	sp|O23169|PP353_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00757g03002.1	sp|B1B5D5|NNJA3_WHEAT	***-	Ninja-family protein 3	IPR012463 (Ninja)	
Niben101Scf16244g02011.1	ref|XP_007010829.1|	*-*-	Nuclear matrix protein-related isoform 2 [Theobroma cacao] gb|EOY19639.1| Nuclear matrix protein-related isoform 2 [Theobroma cacao]		
Niben101Scf07656g00006.1	sp|Q96499|RL44_GOSHI	*-*-	60S ribosomal protein L44	IPR000552 (Ribosomal protein L44e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01375g05007.1	gb|AET04587.2|	*-*-	RPM1-interacting protein 4 (RIN4) family protein [Medicago truncatula]		
Niben101Scf01685g05002.1	ref|XP_002522703.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF39665.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02348g08004.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04847g03018.1	sp|Q1CZI7|HTPG_MYXXD	*-*-	Chaperone protein HtpG	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf09575g01004.1	sp|Q43291|RL211_ARATH	***-	60S ribosomal protein L21-1	IPR001147 (Ribosomal protein L21e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00046g03002.1	sp|Q9LY87|RGLG2_ARATH	***-	E3 ubiquitin-protein ligase RGLG2	IPR002035 (von Willebrand factor, type A), IPR010734 (Copine), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00304g07021.1	sp|Q9FNN5|NDUV1_ARATH	--*-	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial		
Niben101Scf17612g02002.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06992g00014.1			Unknown protein		
Niben101Scf00807g03029.1	sp|P46423|GSTF_HYOMU	***-	Glutathione S-transferase	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf01365g06006.1	sp|Q4P6E2|EIF3I_USTMA	****	Eukaryotic translation initiation factor 3 subunit I	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR027525 (Eukaryotic translation initiation factor 3 subunit I)	GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf12134g00004.1	sp|Q9LV48|PERK1_ARATH	*-*-	Proline-rich receptor-like protein kinase PERK1		
Niben101Scf00568g04019.1	sp|Q7U4J4|RS3_SYNPX	****	30S ribosomal protein S3	IPR005704 (Ribosomal protein S3, bacterial), IPR015946 (K homology domain-like, alpha/beta)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf06754g00002.1	sp|Q43043|PME_PETIN	*-**	Pectinesterase	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf03551g00005.1	sp|Q9ZPQ3|GEK1_ARATH	****	D-aminoacyl-tRNA deacylase	IPR007508 (D-aminoacyl-tRNA deacylase)	GO:0016788 (hydrolase activity, acting on ester bonds), GO:0051499 (D-aminoacyl-tRNA deacylase activity)
Niben101Scf00986g01010.1	sp|A0PPP5|TAL_MYCUA	***-	Transaldolase	IPR001585 (Transaldolase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004801 (sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity), GO:0005737 (cytoplasm), GO:0005975 (carbohydrate metabolic process), GO:0006098 (pentose-phosphate shunt)
Niben101Scf00627g01002.1	sp|A6X2G7|BETA_OCHA4	*-*-	Oxygen-dependent choline dehydrogenase	IPR000172 (Glucose-methanol-choline oxidoreductase, N-terminal)	GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00077g04002.1	AT5G45790.2	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=439	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf00442g01001.1	sp|Q9FY69|BH143_ARATH	***-	Transcription factor bHLH143		
Niben101Scf02297g01002.1	sp|Q9FJL8|RP5L1_ARATH	****	DNA-directed RNA polymerase subunit 5-like protein 1	IPR014381 (DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus), IPR020609 (Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf03536g01018.1	ref|XP_007026849.1|	--*-	UDP-glucosyl transferase 85A3, putative [Theobroma cacao] gb|EOY07351.1| UDP-glucosyl transferase 85A3, putative [Theobroma cacao]		
Niben101Scf17398g00012.1	sp|Q9T048|DRL27_ARATH	***-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf04096g00010.1	sp|Q8CPC7|TKT_STAES	***-	Transketolase	IPR005475 (Transketolase-like, pyrimidine-binding domain), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00438g00018.1	sp|B6ISW8|NUON_RHOCS	*-*-	NADH-quinone oxidoreductase subunit N		
Niben101Scf28725g00006.1	sp|Q84W04|CNIH4_ARATH	***-	Protein cornichon homolog 4	IPR003377 (Cornichon)	GO:0016020 (membrane), GO:0035556 (intracellular signal transduction)
Niben101Scf04400g00010.1	emb|CDX95941.1|	***-	BnaA07g27900D [Brassica napus]	IPR008581 (Protein of unknown function DUF863, plant)	
Niben101Scf00980g06015.1	gb|KEH22861.1|	***-	DUF247 domain protein [Medicago truncatula]	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf07616g02005.1	sp|Q8N4J0|CI041_HUMAN	*-*-	UPF0586 protein C9orf41	IPR012901 (N2227-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00492g00011.1	sp|Q9SS44|TF2B2_ARATH	****	Transcription initiation factor IIB-2	IPR000812 (Transcription factor TFIIB), IPR023486 (Transcription factor TFIIB, conserved site)	GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0017025 (TBP-class protein binding)
Niben101Scf02772g01010.1	AT3G50660.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08785g02014.1	sp|P54677|PI4K_DICDI	*-**	Phosphatidylinositol 4-kinase	IPR015433 (Phosphatidylinositol Kinase)	GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor), GO:0046854 (phosphatidylinositol phosphorylation), GO:0048015 (phosphatidylinositol-mediated signaling)
Niben101Scf06628g00032.1	ref|YP_002608363.1|	*-*-	PSII 32 kDa protein [Vitis vinifera] emb|CAQ77603.1| PSII 32 kDa protein [Vitis vinifera] gb|ACS15235.1| PSII 32 kDa protein [Vitis vinifera]		
Niben101Scf03515g00075.1	sp|Q1IS52|NUON1_KORVE	*-*-	NADH-quinone oxidoreductase subunit N 1	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf16185g00006.1	sp|P62191|PRS4_HUMAN	*-*-	26S protease regulatory subunit 4	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf08833g01006.1	sp|P84227|H32_BOVIN	***-	Histone H3.2	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf00751g06007.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf36722g00001.1	ref|NP_001276266.1|	--*-	mediator-associated protein 2-like [Glycine max] gb|ACU24621.1| unknown [Glycine max]		
Niben101Scf02062g09009.1	ref|WP_009634204.1|	****	outer membrane protein/protective antigen OMA87 [Synechocystis sp. PCC 7509]	IPR000184 (Bacterial surface antigen (D15)), IPR010827 (Surface antigen variable number)	GO:0019867 (outer membrane)
Niben101Scf01795g02015.1	AT2G36970.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=490	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03365g03017.1	sp|Q8NEZ4|KMT2C_HUMAN	*-**	Histone-lysine N-methyltransferase 2C	IPR001214 (SET domain), IPR007728 (Pre-SET domain), IPR018848 (WIYLD domain), IPR025776 (Histone-lysine N-methyltransferase SUVR1/2/4)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation)
Niben101Scf37888g00002.1	AT3G62370.1	****	heme binding LENGTH=361	IPR019020 (Cytochrome c-552/DMSO reductase-like, haem-binding domain)	GO:0020037 (heme binding)
Niben101Scf00963g02005.1	sp|Q9SSL9|PEPR1_ARATH	*-*-	Leucine-rich repeat receptor-like protein kinase PEPR1	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf04177g02016.1	AT2G46910.1	*-*-	Plastid-lipid associated protein PAP / fibrillin family protein LENGTH=284		
Niben101Scf01628g00003.1	sp|Q1JPL7|PME18_ARATH	*-**	Pectinesterase/pectinesterase inhibitor 18	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01639g03001.1	sp|Q9ZQX6|ETOL1_ARATH	***-	ETO1-like protein 1	IPR011333 (BTB/POZ fold), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01943g01005.1			Unknown protein		
Niben101Scf00402g01005.1	ref|XP_007031254.1|	***-	Encodes alpha-helical IF-like protein isoform 2 [Theobroma cacao] gb|EOY11756.1| Encodes alpha-helical IF-like protein isoform 2 [Theobroma cacao]		
Niben101Scf02339g00006.1	sp|Q0WUF6|PUB41_ARATH	--*-	U-box domain-containing protein 41	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00520g00003.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf03978g06009.1	AT5G27970.2	*-*-	ARM repeat superfamily protein LENGTH=1658	IPR026829 (Monensin-resistant homologue 2)	GO:0015031 (protein transport)
Niben101Scf06203g02014.1	ref|WP_026733342.1|	*-*-	epimerase [Fischerella sp. PCC 9605]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf03962g00006.1	sp|P74214|SRP54_SYNY3	*-*-	Signal recognition particle protein	IPR000897 (Signal recognition particle, SRP54 subunit, GTPase domain), IPR005578 (Hrf1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane)
Niben101Scf04951g03008.1	sp|A1USS5|NDVA_BARBK	--**	Beta-(1-->2)glucan export ATP-binding/permease protein NdvA	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01758g01010.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01313g02011.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf10608g02010.1	sp|Q9STF9|PP266_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf08590g03009.1	sp|Q3E6Q1|PPR32_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05245g02003.1	sp|P42327|ADH2_GEOSE	***-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05188g03022.1	sp|B0CAT4|ATPE_ACAM1	****	ATP synthase epsilon chain	IPR001469 (ATPase, F1 complex, delta/epsilon subunit)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf15792g00002.1	sp|Q72MG4|IPYR_LEPIC	****	Inorganic pyrophosphatase	IPR008162 (Inorganic pyrophosphatase)	GO:0000287 (magnesium ion binding), GO:0004427 (inorganic diphosphatase activity), GO:0005737 (cytoplasm), GO:0006796 (phosphate-containing compound metabolic process)
Niben101Scf00161g00006.1	sp|A4QKS2|RPOC1_CRUWA	*-**	DNA-directed RNA polymerase subunit beta'	IPR006592 (RNA polymerase, N-terminal)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf03170g02002.1	gb|ACG38839.1|	*-*-	snRK1-interacting protein 1 [Zea mays]		
Niben101Scf01259g09002.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf06473g01010.1	sp|Q5EAB2|CDK9_BOVIN	*-**	Cyclin-dependent kinase 9	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06913g00005.1	AT3G06790.1	*-*-	plastid developmental protein DAG, putative LENGTH=244		
Niben101Scf07203g02003.1			Unknown protein		
Niben101Scf10064g00008.1	sp|A6MMU6|RR4_ILLOL	*-*-	30S ribosomal protein S4, chloroplastic	IPR001912 (Ribosomal protein S4/S9, N-terminal)	GO:0005622 (intracellular), GO:0019843 (rRNA binding)
Niben101Scf14542g00031.1	sp|Q9LQL2|PTR14_ARATH	***-	Protein NRT1/ PTR FAMILY 7.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05060g07004.1	sp|Q9C554|EXPA1_ARATH	***-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf01143g03007.1	AT5G17390.1	***-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=285	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf06023g01004.1	sp|Q7ZWF4|RN145_DANRE	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02168g02012.1	sp|Q8BKC5|IPO5_MOUSE	*-*-	Importin-5	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf03804g00011.1	sp|B2S6Z6|RL25_BRUA1	***-	50S ribosomal protein L25	IPR011035 (Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain), IPR029751 (Ribosomal protein L25)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0008097 (5S rRNA binding)
Niben101Scf10132g00017.1	sp|O87690|CBIX_BACME	*-**	Sirohydrochlorin cobaltochelatase	IPR002762 (Cobalamin (vitamin B12) biosynthesis CbiX)	GO:0009236 (cobalamin biosynthetic process), GO:0016852 (sirohydrochlorin cobaltochelatase activity)
Niben101Scf08679g04012.1	ref|XP_007014707.1|	***-	Lipase/lipooxygenase, putative isoform 3 [Theobroma cacao] gb|EOY32326.1| Lipase/lipooxygenase, putative isoform 3 [Theobroma cacao]	IPR008976 (Lipase/lipooxygenase, PLAT/LH2)	GO:0005515 (protein binding)
Niben101Scf05442g03016.1	sp|Q14498|RBM39_HUMAN	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02413g04005.1	AT5G26310.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=481	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf20176g00007.1	AT5G58350.1	***-	with no lysine (K) kinase 4 LENGTH=571		
Niben101Scf01859g04001.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00239g10010.1	sp|Q9C6S1|FH14_ARATH	*-*-	Formin-like protein 14	IPR000008 (C2 domain), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0005515 (protein binding)
Niben101Scf05370g01006.1	sp|Q9FHH5|GDU3_ARATH	***-	Protein GLUTAMINE DUMPER 3		
Niben101Scf02108g04004.1	sp|O23184|CML19_ARATH	****	Calcium-binding protein CML19	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf07813g00002.1	sp|P61242|YCF2_SOLLC	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf04024g01004.1	sp|Q08D11|PTSS2_XENTR	****	Phosphatidylserine synthase 2	IPR004277 (Phosphatidyl serine synthase)	GO:0006659 (phosphatidylserine biosynthetic process)
Niben101Scf10559g01038.1			Unknown protein		
Niben101Scf00576g02008.1	emb|CDX81733.1|	*-*-	BnaC08g38680D [Brassica napus]		
Niben101Scf03129g00002.1			Unknown protein		
Niben101Scf00370g04029.1			Unknown protein		
Niben101Scf10152g02003.1	gb|AES86701.2|	*-*-	DCD (development and cell death) domain protein [Medicago truncatula]	IPR013989 (Development/cell death domain)	
Niben101Scf03772g02014.1	emb|CDY65120.1|	***-	BnaA01g35330D [Brassica napus]	IPR008546 (Domain of unknown function DUF828), IPR013666 (Pleckstrin-like, plant)	
Niben101Scf01281g10011.1	sp|Q6E7D1|DDB1_SOLCE	****	DNA damage-binding protein 1	IPR004871 (Cleavage/polyadenylation specificity factor, A subunit, C-terminal), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf17635g01012.1			Unknown protein		
Niben101Scf08573g01010.1	sp|Q5ZL42|BZW2_CHICK	***-	Basic leucine zipper and W2 domain-containing protein 2	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02699g02013.1	emb|CDY17979.1|	***-	BnaC03g30510D [Brassica napus]		
Niben101Scf00702g00009.1			Unknown protein		
Niben101Scf03861g02017.1	AT5G10330.1	*-**	histidinol phosphate aminotransferase 1 LENGTH=417	IPR015422 (Pyridoxal phosphate-dependent transferase, major region, subdomain 2)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00546g04001.1	sp|Q7XAD0|HSY1_SOLLC	-**-	Hydroxyproline-rich systemin		
Niben101Scf13186g03002.1	sp|Q43497|MDAR_SOLLC	--*-	Monodehydroascorbate reductase		
Niben101Scf01385g01013.1	gb|AFI44305.1|	*-**	DNA polymerase (mitochondrion) [Silene vulgaris]	IPR004868 (DNA-directed DNA polymerase, family B, mitochondria/virus), IPR012337 (Ribonuclease H-like domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf00485g02018.1	emb|CDX74218.1|	*-*-	BnaA03g28290D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00377g01010.1	gb|ABF95168.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf16956g00002.1	AT1G55760.1	***-	BTB/POZ domain-containing protein LENGTH=329	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf12266g09001.1	AT1G80130.1	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=305	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Scf08127g12002.1	sp|Q9LI83|ALA10_ARATH	****	Phospholipid-transporting ATPase 10	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf07761g01005.1	dbj|BAB11196.1|	*-*-	mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf00799g00011.1	sp|Q39013|NAC2_ARATH	***-	NAC domain-containing protein 2	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf19932g00010.1	AT5G62090.1	*-*-	SEUSS-like 2 LENGTH=816	IPR029005 (LIM-domain binding protein/SEUSS)	
Niben101Scf05822g01005.1	gb|ADX62220.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia mexicana]		
Niben101Scf02358g01014.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00160g10002.1	sp|Q9EQ28|DPOD3_MOUSE	*-**	DNA polymerase delta subunit 3	IPR019038 (DNA polymerase subunit Cdc27)	GO:0005634 (nucleus), GO:0006260 (DNA replication)
Niben101Scf00369g02010.1	sp|Q6NUJ5|PWP2B_HUMAN	--*-	PWWP domain-containing protein 2B	IPR000313 (PWWP domain)	
Niben101Scf00878g01004.1	sp|Q945B5|AOP2V_ARATH	*-**	2-oxoglutarate-dependent dioxygenase AOP2	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00435g02007.1	sp|Q6G1W8|ATPG_BARHE	****	ATP synthase gamma chain	IPR000131 (ATPase, F1 complex, gamma subunit), IPR023633 (ATPase, F1 complex, gamma subunit domain)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf07000g01005.1	sp|P82658|TL19_ARATH	*-*-	Thylakoid lumenal 19 kDa protein, chloroplastic	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf01383g07019.1	sp|A2Z1W9|ACCO1_ORYSI	*-*-	1-aminocyclopropane-1-carboxylate oxidase 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00069g11017.1	AT4G37900.1	***-	Protein of unknown function (duplicated DUF1399) LENGTH=787	IPR009836 (Protein of unknown function DUF1399)	
Niben101Scf01051g09025.1	sp|B5XAM2|ICT1_SALSA	***-	Peptidyl-tRNA hydrolase ICT1, mitochondrial		
Niben101Scf15723g00005.1	sp|O81488|ALFL4_ARATH	***-	PHD finger protein ALFIN-LIKE 4	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR021998 (Alfin)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0042393 (histone binding)
Niben101Scf02517g15003.1	sp|Q8S8W5|CEMA_ATRBE	*-**	Chloroplast envelope membrane protein	IPR004282 (Chloroplast envelope membrane protein, CemA), IPR006578 (MADF domain)	GO:0016021 (integral component of membrane)
Niben101Scf08368g02002.1	sp|Q9ZU97|VAC14_ARATH	*-*-	Protein VAC14 homolog	IPR026825 (Vacuole morphology and inheritance protein 14)	GO:0043550 (regulation of lipid kinase activity), GO:0070772 (PAS complex)
Niben101Scf01400g02008.1	sp|Q9UBC3|DNM3B_HUMAN	*-**	DNA (cytosine-5)-methyltransferase 3B	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006306 (DNA methylation)
Niben101Scf13622g01009.1	gb|ADV29611.1|	*-*-	At5g37260-like protein [Solanum arcanum]		
Niben101Scf00638g01003.1	ref|NP_001184924.1|	***-	P-loop containing nucle [Arabidopsis thaliana]	IPR010488 (Zeta toxin domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016301 (kinase activity)
Niben101Scf18551g00007.1	ref|XP_003588311.1|	*-*-	NADH-ubiquinone oxidoreductase chain [Medicago truncatula]		
Niben101Scf07969g00003.1	gb|EKO58805.1|	*-*-	glucose/sorbosone dehydrogenase [Leptospira kirschneri str. H2]	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016901 (oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor), GO:0048038 (quinone binding)
Niben101Scf04582g03006.1			Unknown protein		
Niben101Scf00858g01002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04401g01002.1	sp|A1JPA1|MDTK_YERE8	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf34323g00003.1	sp|Q9LT91|PER66_ARATH	****	Peroxidase 66	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07241g00015.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03046g01003.1	ref|WP_027807589.1|	***-	nitrate reductase [Burkholderia cenocepacia]	IPR001248 (Permease, cytosine/purines, uracil, thiamine, allantoin)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0015205 (nucleobase transmembrane transporter activity), GO:0015851 (nucleobase transport), GO:0016020 (membrane)
Niben101Scf02073g01014.1	sp|Q9FZ03|MAN2_SOLLC	*-*-	Mannan endo-1,4-beta-mannosidase 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf02486g04004.1	ref|NP_001174465.1|	--*-	[Oryza sativa Japonica Group] dbj|BAH93193.1| [Oryza sativa Japonica Group]		
Niben101Scf07036g03005.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf01062g01001.1	AT5G48930.1	****	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase LENGTH=433	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02249g01017.1	sp|Q2LVL0|MSBA_SYNAS	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf04609g00027.1	sp|Q56XR6|PP421_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf03203g05018.1	sp|Q6K641|IF4G2_ORYSJ	--*-	Eukaryotic translation initiation factor isoform 4G-2		
Niben101Scf16244g02035.1	sp|Q9VKV8|CFA20_DROME	***-	Cilia- and flagella-associated protein 20	IPR007714 (Cilia/flagella-associated protein 20)	
Niben101Scf02591g00001.1	sp|B7K5U7|GLGC_CYAP8	--*-	Glucose-1-phosphate adenylyltransferase		
Niben101Scf04988g02014.1	sp|P04825|AMPN_ECOLI	***-	Aminopeptidase N	IPR001930 (Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase), IPR024601 (Peptidase M1, alanyl aminopeptidase, C-terminal)	GO:0006508 (proteolysis)
Niben101Scf03262g02007.1	sp|P56335|IF5A3_SOLTU	****	Eukaryotic translation initiation factor 5A-3	IPR001884 (Translation elongation factor IF5A)	GO:0003723 (RNA binding), GO:0003746 (translation elongation factor activity), GO:0006452 (translational frameshifting), GO:0043022 (ribosome binding), GO:0045901 (positive regulation of translational elongation), GO:0045905 (positive regulation of translational termination)
Niben101Scf02792g03027.1	sp|Q9ZVJ6|ANXD4_ARATH	***-	Annexin D4	IPR009118 (Annexin, plant)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf00926g04006.1			Unknown protein		
Niben101Scf01808g01006.1			Unknown protein		
Niben101Scf00282g03024.1	sp|Q7N3V2|MDTK_PHOLL	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf04932g01001.1	sp|Q9XHP0|11S2_SESIN	***-	11S globulin seed storage protein 2	IPR006044 (11-S seed storage protein, plant)	GO:0045735 (nutrient reservoir activity)
Niben101Scf02148g00020.1	sp|Q9LUM1|LOR11_ARATH	***-	Protein LURP-one-related 11	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf04240g02010.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00854g08026.1	gb|AEG80477.1|	*-*-	maturase, partial (mitochondrion) [Montinia caryophyllacea]	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf07977g02004.1	AT3G62260.2	****	Protein phosphatase 2C family protein LENGTH=384	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf06570g05017.1	ref|WP_010349998.1|	--*-	amino acid adenylation protein [Streptomyces acidiscabies]		
Niben101Scf02548g06001.1	sp|Q92WD6|UGPC_RHIME	*-**	sn-glycerol-3-phosphate import ATP-binding protein UgpC	IPR013283 (ABC transporter ABCE), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf01105g04014.1	gb|AIU49564.1|	***-	iron-sulfur cluster biosynthesis family protein, partial [Theobroma cacao]		
Niben101Scf06032g00008.1	sp|Q9SKT3|SCAM1_ARATH	*-**	Secretory carrier-associated membrane protein 1	IPR007273 (SCAMP)	GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf01876g01021.1	sp|Q9FXT9|PRS7_ORYSJ	*-*-	26S protease regulatory subunit 7	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00714g01013.1	sp|Q9ZPV5|NOC2L_ARATH	***-	Nucleolar complex protein 2 homolog	IPR005343 (Nucleolar complex protein 2)	
Niben101Scf01950g04010.1	emb|CDY27599.1|	***-	BnaA09g28080D [Brassica napus]		
Niben101Scf01771g01024.1	sp|Q8BX32|SLX1_MOUSE	*-**	Structure-specific endonuclease subunit SLX1	IPR000305 (GIY-YIG nuclease superfamily), IPR027520 (Structure-specific endonuclease subunit Slx1)	GO:0006281 (DNA repair), GO:0017108 (5'-flap endonuclease activity), GO:0033557 (Slx1-Slx4 complex)
Niben101Scf00854g03012.1	AT2G07772.1	*-*-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=179		
Niben101Scf05368g02001.1	sp|Q9C8T7|PP101_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf10388g00004.1	sp|Q7X923|SPT16_ORYSJ	*-*-	FACT complex subunit SPT16	IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	
Niben101Scf04539g03001.1	sp|P49044|VPE_VICSA	***-	Vacuolar-processing enzyme	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04253g02004.1	AT1G73340.1	***-	Cytochrome P450 superfamily protein LENGTH=514	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02435g01007.1	ref|WP_008319174.1|	***-	Protein of unknown function (DUF1092) [Leptolyngbya sp. PCC 6406]	IPR009472 (Protein of unknown function DUF1092)	
Niben101Scf04446g00024.1	sp|Q9Y5Q8|TF3C5_HUMAN	***-	General transcription factor 3C polypeptide 5	IPR019136 (Transcription factor IIIC, subunit 5)	
Niben101Scf06702g00013.1	sp|Q8LAZ7|CSN5B_ARATH	***-	COP9 signalosome complex subunit 5b	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain)	GO:0005515 (protein binding)
Niben101Scf01626g03002.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf00151g10018.1			Unknown protein		
Niben101Scf01521g13003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04676g01027.1	sp|Q3A248|DEOB_PELCD	--*-	Phosphopentomutase		
Niben101Scf05963g00010.1	sp|Q9M2C0|VITH4_ARATH	***-	Vacuolar iron transporter homolog 4	IPR008217 (Ccc1 family)	
Niben101Scf05541g00002.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Ctg11347g00001.1	tpg|DAA51321.1|	--*-	TPA: hypothetical protein ZEAMMB73_320289 [Zea mays]		
Niben101Scf05166g01020.1	AT5G62550.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43; Bacteria - 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses - 55; Other Eukaryotes - 5075 (source: NCBI BLink). LENGTH=487		
Niben101Scf10322g01013.1	sp|Q8H1U5|APC2_ARATH	****	Anaphase-promoting complex subunit 2	IPR001373 (Cullin, N-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR014786 (Anaphase-promoting complex subunit 2, C-terminal)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf04217g05015.1	sp|Q9FZ95|PUP3_ARATH	***-	Purine permease 3	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf03515g00030.1	sp|A0A335|PSAA_COFAR	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf01631g02002.1	AT1G70640.1	*-*-	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein LENGTH=174	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf00786g00009.1	sp|Q9M302|PP270_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05378g00018.1	ref|NP_001190961.1|	--*-	DNA binding / transcription factor [Arabidopsis thaliana] gb|AEE87030.1| DNA binding / transcription factor [Arabidopsis thaliana]		
Niben101Scf01174g00011.1	emb|CDY32823.1|	--*-	BnaC08g02450D [Brassica napus]		
Niben101Scf07242g05005.1	sp|Q2QW53|MAD13_ORYSJ	*-*-	MADS-box transcription factor 13	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf02145g10019.1	gb|AAA78253.1|	*-*-	glycine-rich protein [Solanum lycopersicum]		
Niben101Scf04495g00029.1	sp|Q32LS6|ABHDD_DANRE	*-*-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07678g06003.1			Unknown protein		
Niben101Scf03100g01016.1	AT5G32440.3	***-	Ubiquitin system component Cue protein LENGTH=265	IPR009060 (UBA-like)	GO:0005515 (protein binding)
Niben101Scf11401g01013.1	sp|B3H4F1|SP1L1_ARATH	***-	Protein SPIRAL1-like 1		
Niben101Scf04867g01002.1	ref|NP_001051735.1|	-**-	product [Oryza sativa Japonica Group]		
Niben101Scf09955g00005.1			Unknown protein		
Niben101Scf02033g01006.1	sp|Q9LNW3|P2C03_ARATH	****	Protein phosphatase 2C 3	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf05043g01012.1	emb|CDX94914.1|	***-	BnaC05g07570D [Brassica napus]		
Niben101Scf11767g02008.1	sp|P46417|GSTX3_SOYBN	*-*-	Glutathione S-transferase 3	IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf03894g00008.1	sp|Q9FGY4|FB341_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf03494g12003.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13308g01011.1	sp|O60182|RFC1_SCHPO	*-*-	Replication factor C subunit 1	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02625g05002.1	ref|XP_003601184.1|	-**-	Phloem specific protein [Medicago truncatula] gb|AES71435.1| phloem specific protein [Medicago truncatula]		
Niben101Scf11078g00010.1	AT4G18700.1	****	CBL-interacting protein kinase 12 LENGTH=489	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02305g01016.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf00637g05015.1	AT3G32047.1	***-	Cytochrome P450 superfamily protein LENGTH=502	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00611g06002.1	AT5G28040.1	*-*-	DNA-binding storekeeper protein-related transcriptional regulator LENGTH=427	IPR007592 (Protein of unknown function DUF573)	
Niben101Scf00380g04003.1	sp|Q9LQ16|PPR94_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05188g02005.1	sp|Q93W54|ICMTB_ARATH	****	Protein-S-isoprenylcysteine O-methyltransferase B	IPR007269 (Isoprenylcysteine carboxyl methyltransferase)	GO:0004671 (protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity), GO:0005783 (endoplasmic reticulum), GO:0006481 (C-terminal protein methylation), GO:0016021 (integral component of membrane)
Niben101Scf00646g09009.1	sp|Q9FH05|SCP42_ARATH	****	Serine carboxypeptidase-like 42	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01958g00001.1	sp|Q9M0M5|SCL13_ARATH	*-*-	Scarecrow-like protein 13	IPR005202 (Transcription factor GRAS), IPR030005 (Scarecrow-like protein 13)	
Niben101Scf00109g01005.1	emb|CDY26595.1|	--*-	BnaA09g46820D [Brassica napus]		
Niben101Scf04114g01048.1	sp|Q54JC8|PUR4_DICDI	*-*-	Phosphoribosylformylglycinamidine synthase	IPR016188 (PurM, N-terminal-like)	GO:0003824 (catalytic activity)
Niben101Scf03407g01018.1	sp|P73318|RL23_SYNY3	*-*-	50S ribosomal protein L23	IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf12754g00011.1	sp|Q94BT0|SPSA1_ARATH	****	Sucrose-phosphate synthase 1	IPR012819 (Sucrose phosphate synthase, plant)	GO:0005985 (sucrose metabolic process), GO:0009058 (biosynthetic process), GO:0046524 (sucrose-phosphate synthase activity)
Niben101Scf10938g00002.1	sp|Q9ZUH5|SDR2B_ARATH	****	Short-chain dehydrogenase/reductase 2b	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02634g03003.1	gb|AFZ39151.1|	*-*-	hemerythrin class glutathione S-transferase [Physcomitrella patens]	IPR012312 (Haemerythrin/HHE cation-binding motif)	
Niben101Scf07462g01002.1			Unknown protein		
Niben101Scf03427g09003.1	sp|Q9SGP6|GRXC9_ARATH	***-	Glutaredoxin-C9	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf08564g01013.1	sp|Q15785|TOM34_HUMAN	*-*-	Mitochondrial import receptor subunit TOM34	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf16127g00005.1	sp|Q84W91|C3H32_ARATH	***-	Zinc finger CCCH domain-containing protein 32	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf00126g03005.1	AT5G40770.1	***-	prohibitin 3 LENGTH=277	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf01005g04006.1	emb|CDX99259.1|	***-	BnaC05g33740D [Brassica napus]		
Niben101Scf08426g00011.1	sp|O34358|HTRA_BACSU	*-**	Serine protease Do-like HtrA	IPR001940 (Peptidase S1C), IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity), GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf07462g01004.1	AT3G26320.1	*-*-	cytochrome P450, family 71, subfamily B, polypeptide 36 LENGTH=500	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09363g00026.1	ref|XP_002515984.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46404.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00883g08004.1			Unknown protein		
Niben101Scf06077g01010.1	sp|Q4KL91|S36A4_XENLA	*-*-	Proton-coupled amino acid transporter 4	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf10322g01014.1	sp|Q680H3|PP170_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf00109g01003.1			Unknown protein		
Niben101Scf05872g05002.1	sp|Q9FMG1|MCA3_ARATH	*-*-	Metacaspase-3		
Niben101Scf14194g00003.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf06700g03001.1			Unknown protein		
Niben101Scf04018g13004.1	sp|Q556Y4|KC1_DICDI	****	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09808g01002.1	sp|Q1LUM3|ENDUC_DANRE	***-	Poly(U)-specific endoribonuclease-C	IPR018998 (Endoribonuclease XendoU)	GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf05964g00023.1	AT5G04990.1	***-	SAD1/UNC-84 domain protein 1 LENGTH=471	IPR012919 (SUN domain)	
Niben101Scf04663g05016.1	sp|Q5ZJJ2|RFA1_CHICK	*-*-	Replication protein A 70 kDa DNA-binding subunit	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf02553g01006.1	sp|Q9LV60|CRR55_ARATH	--*-	Cysteine-rich repeat secretory protein 55	IPR002902 (Gnk2-homologous domain)	
Niben101Scf06949g02020.1	sp|Q5S1U6|IFRD1_PIG	*-*-	Interferon-related developmental regulator 1	IPR007701 (Interferon-related developmental regulator, N-terminal)	
Niben101Scf08782g03008.1	sp|P43186|BEV1M_BETPN	***-	Major pollen allergen Bet v 1-M/N	IPR000916 (Bet v I domain), IPR023393 (START-like domain), IPR024949 (Bet v I type allergen)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf02134g00011.1	AT2G28430.1	***-	unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=85		
Niben101Scf04552g01003.1	sp|Q570B4|KCS10_ARATH	***-	3-ketoacyl-CoA synthase 10	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf05632g00007.1	sp|B0URW9|SYK_HISS2	--*-	Lysine--tRNA ligase	IPR025757 (Ternary complex factor MIP1, leucine-zipper)	
Niben101Scf04185g04005.1	sp|Q9LSF7|Y3518_ARATH	*-*-	B3 domain-containing protein	IPR005508 (B3 domain-containing protein), IPR015300 (DNA-binding pseudobarrel domain)	
Niben101Scf00414g06008.1	sp|Q1CZI7|HTPG_MYXXD	*-*-	Chaperone protein HtpG	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf00611g08016.1	gb|KEH32482.1|	***-	plant/F27B13-30 protein [Medicago truncatula]	IPR019340 (Histone acetyltransferases subunit 3)	
Niben101Scf04812g01010.1	AT2G35500.1	***-	shikimate kinase like 2 LENGTH=387	IPR000623 (Shikimate kinase/Threonine synthase-like 1), IPR008978 (HSP20-like chaperone), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf10885g00015.1	sp|Q8PV45|RL22_METMA	****	50S ribosomal protein L22	IPR001063 (Ribosomal protein L22/L17)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf02721g04009.1	sp|Q6IP65|RCD1_XENLA	*-*-	Cell differentiation protein RCD1 homolog	IPR007216 (Rcd1)	
Niben101Scf07611g00008.1	ref|XP_003630826.1|	*-*-	Lipase [Medicago truncatula] gb|AET05302.1| alpha/beta hydrolase family protein [Medicago truncatula]		
Niben101Scf14714g00021.1	sp|B0Y384|GMT_ASPFC	***-	GDP-mannose transporter		
Niben101Scf02868g05008.1	AT4G31410.1	***-	Protein of unknown function (DUF1644) LENGTH=308	IPR012866 (Protein of unknown function DUF1644), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf08293g01009.1	sp|Q9SV13|SUT31_ARATH	*-**	Sulfate transporter 3.1	IPR001902 (Sulphate anion transporter)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport), GO:1902358 (sulfate transmembrane transport)
Niben101Scf07678g06001.1	AT1G06490.1	****	glucan synthase-like 7 LENGTH=1958	IPR003440 (Glycosyl transferase, family 48), IPR023175 (Vacuolar protein sorting-associate protein Vta1/Callose synthase, N-terminal domain), IPR026899 (1,3-beta-glucan synthase subunit FKS1-like, domain-1)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf05956g00006.1	ref|XP_007039659.1|	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao] gb|EOY24160.1| Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao]	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02351g08017.1	emb|CDY48471.1|	***-	BnaC05g13310D [Brassica napus]	IPR008889 (VQ)	
Niben101Scf05447g02003.1			Unknown protein		
Niben101Scf16329g00024.1	sp|O80854|B561L_ARATH	***-	Cytochrome b561 domain-containing protein		
Niben101Scf08758g02001.1	AT2G30090.1	***-	Acyl-CoA N-acyltransferases (NAT) superfamily protein LENGTH=386	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf02041g04018.1	AT4G35590.1	***-	RWP-RK domain-containing protein LENGTH=370	IPR003035 (RWP-RK domain)	
Niben101Scf01931g05008.1	sp|Q9Z311|MECR_RAT	****	Trans-2-enoyl-CoA reductase, mitochondrial	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01008g01022.1			Unknown protein		
Niben101Scf10980g00001.1	sp|Q8LGU6|CD27B_ARATH	***-	Cell division cycle protein 27 homolog B	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01991g01004.1	emb|CDY01781.1|	***-	BnaC06g28210D [Brassica napus]		
Niben101Scf07743g02001.1			Unknown protein		
Niben101Scf05032g00004.1	sp|P61028|RAB8B_MOUSE	--*-	Ras-related protein Rab-8B	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf02858g02012.1	emb|CDX76590.1|	*-*-	BnaA08g08100D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf00176g00004.1	ref|WP_009074850.1|	--*-	N2,N2-dimethylguanosine tRNA methyltransferase [Metallosphaera yellowstonensis] gb|EHP68441.1| N2,N2-dimethylguanosine tRNA methyltransferase [Metallosphaera yellowstonensis MK1]		
Niben101Scf08186g00013.1	sp|Q7XR02|IBH1_ORYSJ	--*-	Transcription factor IBH1		
Niben101Scf01721g03004.1	AT2G43970.1	*-**	RNA-binding protein LENGTH=545	IPR002344 (Lupus La protein), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0006396 (RNA processing), GO:0030529 (ribonucleoprotein complex)
Niben101Scf00151g10016.1	AT1G04580.1	***-	aldehyde oxidase 4 LENGTH=1337	IPR016166 (FAD-binding, type 2), IPR016208 (Aldehyde oxidase/xanthine dehydrogenase)	GO:0003824 (catalytic activity), GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0046872 (metal ion binding), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06376g04017.1			Unknown protein		
Niben101Scf07850g03002.1	sp|Q5RBU7|PCP_PONAB	****	Lysosomal Pro-X carboxypeptidase	IPR008758 (Peptidase S28), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf02006g04010.1	sp|Q9ARI6|CMT2_MAIZE	*-*-	DNA (cytosine-5)-methyltransferase 2	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf06235g02011.1	sp|Q5Z922|S40A1_ORYSJ	***-	Solute carrier family 40 member 1	IPR009716 (Ferroporti-1), IPR020846 (Major facilitator superfamily domain)	GO:0005381 (iron ion transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0034755 (iron ion transmembrane transport)
Niben101Scf05487g01004.1	sp|B7MHC0|UBIE_ECO45	--**	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf07147g01008.1	AT5G55660.1	*-*-	DEK domain-containing chromatin associated protein LENGTH=778	IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding)
Niben101Scf05278g00003.1			Unknown protein		
Niben101Scf06639g01008.1	sp|O49006|PME3_ARATH	****	Pectinesterase/pectinesterase inhibitor 3	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01556g02003.1	gb|AES99834.2|	***-	E3 ubiquitin-protein ligase COP1 [Medicago truncatula]	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08179g00006.1	sp|Q5U9F2|GNA1_ORYSJ	--**	Glucosamine 6-phosphate N-acetyltransferase 1	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf03422g04036.1	sp|Q9M815|PCR8_ARATH	***-	Protein PLANT CADMIUM RESISTANCE 8	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf03108g12002.1	emb|CDY21363.1|	--*-	BnaA09g30640D [Brassica napus]	IPR008004 (Uncharacterised protein family UPF0503)	
Niben101Scf07152g04024.1	sp|Q5HZH2|TSR3_MOUSE	*-*-	Ribosome biogenesis protein TSR3 homolog	IPR007177 (Domain of unknown function DUF367), IPR007209 (RNase L inhibitor RLI, possible metal-binding domain), IPR022968 (Ribosome biogenesis protein)	
Niben101Scf01687g01012.1	sp|B0KC91|PANC_THEP3	****	Pantothenate synthetase	IPR003721 (Pantoate-beta-alanine ligase)	GO:0003824 (catalytic activity), GO:0004592 (pantoate-beta-alanine ligase activity), GO:0009058 (biosynthetic process), GO:0015940 (pantothenate biosynthetic process)
Niben101Scf01887g07002.1	sp|Q6IP09|PABPB_XENLA	*-**	Polyadenylate-binding protein 1-B	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05750g00008.1			Unknown protein		
Niben101Scf05582g04012.1	AT5G48720.2	***-	x-ray induced transcript 1 LENGTH=300		
Niben101Scf00248g02022.1	sp|Q9LYT2|PP287_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01300g00004.1	sp|Q8TAD4|ZNT5_HUMAN	*-**	Zinc transporter 5	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf12515g00025.1	AT4G29510.1	****	arginine methyltransferase 11 LENGTH=390	IPR025799 (Protein arginine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity)
Niben101Scf05467g00014.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf07314g04002.1	sp|P19963|ALL1_OLEEU	***-	Major pollen allergen Ole e 1	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf00887g04013.1	sp|Q99614|TTC1_HUMAN	--*-	Tetratricopeptide repeat protein 1	IPR011990 (Tetratricopeptide-like helical domain), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf02225g00001.1	gb|ACV41023.1|	*-*-	self-incompatibility protein [Argemone munita]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf00857g00002.1			Unknown protein		
Niben101Scf11999g00008.1	sp|Q8GYF7|NUP54_ARATH	*-*-	Nuclear pore complex protein NUP54	IPR025712 (Nucleoporin Nup54, alpha-helical domain)	
Niben101Scf07969g00004.1	sp|Q0WVK7|PPR12_ARATH	*-*-	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial		
Niben101Scf02541g10027.1	sp|P05100|3MG1_ECOLI	****	DNA-3-methyladenine glycosylase 1	IPR005019 (Methyladenine glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0008725 (DNA-3-methyladenine glycosylase activity)
Niben101Scf02437g01001.1			Unknown protein	IPR008889 (VQ)	
Niben101Scf02658g04010.1	AT4G38840.1	***-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02021g02008.1	sp|Q75HV0|CCP31_ORYSJ	****	Cyclin-P3-1	IPR013763 (Cyclin-like), IPR013922 (Cyclin PHO80-like)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0019901 (protein kinase binding)
Niben101Scf03979g02009.1	AT5G57345.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=188	IPR010903 (Protein of unknown function DUF1517)	
Niben101Scf08156g06001.1	sp|D4ACP5|RECQ5_RAT	*-**	ATP-dependent DNA helicase Q5	IPR004589 (DNA helicase, ATP-dependent, RecQ type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0006310 (DNA recombination), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf13002g03035.1	sp|Q39147|3MG_ARATH	****	DNA-3-methyladenine glycosylase	IPR003180 (Methylpurine-DNA glycosylase (MPG))	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0003905 (alkylbase DNA N-glycosylase activity), GO:0006284 (base-excision repair)
Niben101Scf10036g01005.1	sp|Q5SCZ3|NDHH_HUPLU	--*-	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic		
Niben101Scf08806g01003.1	AT4G27670.1	***-	heat shock protein 21 LENGTH=227	IPR008978 (HSP20-like chaperone)	
Niben101Scf04903g01012.1	AT3G10870.1	***-	methyl esterase 17 LENGTH=276	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07086g00016.1	sp|P15252|REF_HEVBR	***-	Rubber elongation factor protein	IPR008802 (Rubber elongation factor)	
Niben101Scf17158g00001.1	AT5G48790.1	*-*-	Domain of unknown function (DUF1995) LENGTH=316	IPR018962 (Domain of unknown function DUF1995)	
Niben101Ctg02379g00002.1	sp|Q9SX98|LHTL8_ARATH	*-*-	Lysine histidine transporter-like 8	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf09223g00002.1	ref|WP_005849707.1|	****	NADPH:quinone oxidoreductase [Sulfitobacter sp. EE-36] gb|EAP85125.1| oxidoreductase, zinc-binding dehydrogenase family protein [Sulfitobacter sp. EE-36]	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04607g06008.1	sp|Q8GW80|FBL65_ARATH	*-*-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05044g04030.1	sp|P25076|CY11_SOLTU	*-**	Cytochrome c1-1, heme protein, mitochondrial	IPR002326 (Cytochrome c1)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf33623g00002.1	AT3G46920.1	*-*-	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain LENGTH=1171	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf06369g04008.1	AT4G23100.1	****	glutamate-cysteine ligase LENGTH=522	IPR006336 (Glutamate--cysteine ligase, GCS2)	GO:0004357 (glutamate-cysteine ligase activity), GO:0006750 (glutathione biosynthetic process), GO:0042398 (cellular modified amino acid biosynthetic process)
Niben101Scf01181g04010.1	AT1G18370.1	****	ATP binding microtubule motor family protein LENGTH=974	IPR001752 (Kinesin motor domain), IPR021881 (Protein of unknown function DUF3490), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf04192g00015.1	AT4G16745.2	***-	Exostosin family protein LENGTH=589	IPR004263 (Exostosin-like)	
Niben101Scf01700g01004.1	sp|Q3ANI8|CLPP1_SYNSC	*-*-	ATP-dependent Clp protease proteolytic subunit 1	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02041g01017.1	AT4G35260.1	***-	isocitrate dehydrogenase 1 LENGTH=367	IPR001804 (Isocitrate and isopropylmalate dehydrogenases family), IPR024084 (Isopropylmalate dehydrogenase-like domain)	GO:0000287 (magnesium ion binding), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07162g04010.1	AT2G39770.1	***-	Glucose-1-phosphate adenylyltransferase family protein LENGTH=361	IPR001451 (Bacterial transferase hexapeptide repeat), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf00152g09015.1	sp|Q40585|VATL_TOBAC	****	V-type proton ATPase 16 kDa proteolipid subunit	IPR000245 (V-ATPase proteolipid subunit), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf03048g03001.1	gb|AAP82819.1|	***-	resistance protein RPP8-like protein [Arabidopsis thaliana]		
Niben101Scf01022g00014.1	sp|Q9LSM9|SCP33_ARATH	****	Serine carboxypeptidase-like 33	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01046g03002.1	sp|Q9LZQ1|TBL6_ARATH	*-*-	Protein trichome birefringence-like 6	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf03171g03002.1	sp|O65390|APA1_ARATH	****	Aspartic proteinase A1	IPR001461 (Aspartic peptidase), IPR007856 (Saposin-like type B, 1), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis), GO:0006629 (lipid metabolic process)
Niben101Scf00486g01018.1			Unknown protein		
Niben101Scf08717g00004.1	sp|Q9FG37|GACP3_ARATH	***-	Gamma-tubulin complex component 3	IPR007259 (Gamma-tubulin complex component protein)	GO:0000226 (microtubule cytoskeleton organization), GO:0000922 (spindle pole), GO:0005815 (microtubule organizing center), GO:0005856 (cytoskeleton), GO:0007020 (microtubule nucleation)
Niben101Scf13103g01040.1	gb|KFB86043.1|	***-	molecular chaperone DnaJ [Calothrix sp. 336/3]	IPR021788 (Protein of unknown function DUF3353)	
Niben101Scf03348g00006.1	sp|Q9SHB5|WRK55_ARATH	--*-	WRKY transcription factor 55		
Niben101Scf07713g00004.1	sp|Q9SJ74|B561G_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR006593 (Cytochrome b561/ferric reductase transmembrane)	
Niben101Scf02749g04009.1	emb|CDX97532.1|	*-*-	BnaA05g25470D [Brassica napus]		
Niben101Scf17719g00009.1	sp|Q39117|TGT2_ARATH	--*-	Trihelix transcription factor GT-2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf01338g06004.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025558 (Domain of unknown function DUF4283), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf12290g00001.1	AT3G22270.1	***-	Topoisomerase II-associated protein PAT1 LENGTH=782		
Niben101Scf02102g01013.1	AT1G62510.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=149	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf09030g04006.1	emb|CDY29579.1|	*-*-	BnaA03g54240D [Brassica napus]	IPR008889 (VQ)	
Niben101Scf01070g00007.1	AT5G42130.1	***-	Mitochondrial substrate carrier family protein LENGTH=412	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf08470g02002.1	AT3G22970.1	***-	Protein of unknown function (DUF506) LENGTH=370	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf01758g00007.1	sp|Q9FUR2|IP5P2_ARATH	*-*-	Type I inositol 1,4,5-trisphosphate 5-phosphatase 2	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf03072g00004.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01120g00007.1	gb|AES98140.2|	*-*-	phage capsid scaffolding protein (GPO) serine peptidase [Medicago truncatula]		
Niben101Scf07757g00005.1	emb|CDX83343.1|	***-	BnaA03g21630D [Brassica napus]		
Niben101Scf06684g02002.1	sp|A7HY18|EFTS_PARL1	*-**	Elongation factor Ts	IPR001816 (Translation elongation factor EFTs/EF1B)	GO:0003746 (translation elongation factor activity), GO:0005622 (intracellular), GO:0006414 (translational elongation)
Niben101Scf01724g00006.1	emb|CAE04909.2|	--*-	OSJNBa0082E08.6 [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf00370g04027.1	sp|B8D3V1|SYS_DESK1	****	Serine--tRNA ligase	IPR002317 (Serine-tRNA ligase, type1)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004828 (serine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006434 (seryl-tRNA aminoacylation)
Niben101Scf06621g02038.1	ref|NP_001052354.1|	***-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf02151g04020.1	sp|A9NEX8|NAGB_ACHLI	****	Glucosamine-6-phosphate deaminase	IPR006148 (Glucosamine/galactosamine-6-phosphate isomerase)	GO:0005975 (carbohydrate metabolic process), GO:0006098 (pentose-phosphate shunt), GO:0017057 (6-phosphogluconolactonase activity)
Niben101Scf02219g00002.1	sp|Q9C9S4|TPPB_ARATH	****	Trehalose-phosphate phosphatase B	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf02737g03004.1	AT5G35810.1	***-	Ankyrin repeat family protein LENGTH=347	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	
Niben101Scf14028g02014.1			Unknown protein		
Niben101Scf02514g01001.1	emb|CDY72280.1|	--*-	BnaCnng76880D [Brassica napus]		
Niben101Scf07741g05001.1	AT1G16860.1	***-	Ubiquitin-specific protease family C19-related protein LENGTH=474		
Niben101Scf02763g02013.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04233g00015.1	sp|Q56X05|PPR15_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01623g08001.1			Unknown protein		
Niben101Scf02738g06012.1	sp|Q9VT28|FRY_DROME	*-*-	Protein furry	IPR025614 (Cell morphogenesis protein N-terminal)	
Niben101Scf05369g01009.1	sp|O66271|FUMC_THET2	****	Fumarate hydratase class II	IPR000362 (Fumarate lyase family), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0004333 (fumarate hydratase activity), GO:0006099 (tricarboxylic acid cycle), GO:0006106 (fumarate metabolic process), GO:0016829 (lyase activity), GO:0045239 (tricarboxylic acid cycle enzyme complex)
Niben101Scf01300g02008.1	sp|A7RRJ0|FEN1_NEMVE	*-**	Flap endonuclease 1	IPR001044 (XPG/Rad2 endonuclease, eukaryotes), IPR029060 (PIN domain-like)	GO:0003677 (DNA binding), GO:0003697 (single-stranded DNA binding), GO:0003824 (catalytic activity), GO:0004518 (nuclease activity), GO:0004519 (endonuclease activity), GO:0005634 (nucleus), GO:0006289 (nucleotide-excision repair), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00110g00013.1	sp|O60306|AQR_HUMAN	***-	Intron-binding protein aquarius	IPR026300 (CWF11 family), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf04950g04018.1	sp|Q8CIB9|ESCO2_MOUSE	*-*-	N-acetyltransferase ESCO2	IPR028005 (N-acetyltransferase ESCO, zinc-finger), IPR028009 (N-acetyltransferase ESCO, acetyl-transferase domain)	
Niben101Scf02955g04004.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06385g00015.1			Unknown protein		
Niben101Scf21408g00009.1	sp|O74347|COXM1_SCHPO	-**-	COX assembly mitochondrial protein 1	IPR013892 (Cytochrome c oxidase biogenesis protein Cmc1-like)	
Niben101Scf04500g03007.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf27527g00004.1	AT3G54040.1	***-	PAR1 protein LENGTH=183	IPR009489 (PAR1)	
Niben101Scf06291g03019.1	AT1G09320.1	*-*-	agenet domain-containing protein LENGTH=517	IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf09832g01002.1	gb|AES97132.2|	--*-	DUF223 domain protein [Medicago truncatula]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Ctg15403g00003.1	ref|XP_007026669.1|	*-*-	Transducin family protein / WD-40 repeat family protein, putative isoform 1 [Theobroma cacao] gb|EOY07171.1| Transducin family protein / WD-40 repeat family protein, putative isoform 1 [Theobroma cacao]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00883g10002.1	AT2G21270.3	****	ubiquitin fusion degradation 1 LENGTH=340	IPR004854 (Ubiquitin fusion degradation protein UFD1)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf01025g04009.1	emb|CDX80831.1|	*-*-	BnaC03g00850D [Brassica napus]		
Niben101Scf07797g03004.1	sp|Q9SY55|ECA3_ARATH	*-*-	Calcium-transporting ATPase 3, endoplasmic reticulum-type	IPR023299 (P-type ATPase, cytoplasmic domain N)	GO:0000166 (nucleotide binding)
Niben101Scf12680g03004.1	sp|A0PQX0|PHMT1_MYCUA	--**	Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase 1	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf00483g02003.1	sp|Q1KKR9|LNPB_TAKRU	***-	Protein lunapark-B	IPR019273 (Domain of unknown function DUF2296)	
Niben101Scf10560g00009.1	sp|Q8H038|KATAM_ORYSJ	*-*-	Xyloglucan galactosyltransferase KATAMARI1 homolog	IPR004263 (Exostosin-like)	
Niben101Scf01661g01008.1	AT3G56840.1	****	FAD-dependent oxidoreductase family protein LENGTH=483	IPR006076 (FAD dependent oxidoreductase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01214g02004.1	sp|Q6GQ69|FAF2B_XENLA	***-	FAS-associated factor 2-B	IPR006577 (UAS), IPR009060 (UBA-like), IPR012336 (Thioredoxin-like fold), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf05029g02016.1	AT1G21550.1	****	Calcium-binding EF-hand family protein LENGTH=155	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf06112g01007.1	sp|Q94A84|U72E1_ARATH	--*-	UDP-glycosyltransferase 72E1		
Niben101Scf03377g05022.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09960g00007.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR001878 (Zinc finger, CCHC-type), IPR007527 (Zinc finger, SWIM-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf08000g01003.1	AT4G35690.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=284	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf02878g02004.1	ref|XP_002521141.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF41292.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00994g06007.1	sp|O16102|CHD3_DROME	*-**	Chromodomain-helicase-DNA-binding protein 3	IPR000330 (SNF2-related), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016197 (Chromo domain-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding)
Niben101Scf03292g00007.1	sp|Q94A79|DMS3_ARATH	--*-	Protein DEFECTIVE IN MERISTEM SILENCING 3		
Niben101Scf00811g07003.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf08045g03008.1	sp|A4QKP2|NU5C_CAPBU	--*-	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf05009g00013.1	emb|CDY50244.1|	*-*-	BnaA06g15210D [Brassica napus]		
Niben101Scf02159g01014.1	sp|Q9FMK7|BT1_ARATH	***-	BTB/POZ and TAZ domain-containing protein 1	IPR000197 (Zinc finger, TAZ-type), IPR011333 (BTB/POZ fold)	GO:0003712 (transcription cofactor activity), GO:0004402 (histone acetyltransferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf05226g03007.1			Unknown protein		
Niben101Scf18589g00010.1	sp|Q9FGK4|B561J_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR017214 (Uncharacterised conserved protein UCP037471)	GO:0016021 (integral component of membrane)
Niben101Scf01184g15006.1	sp|Q9FZ03|MAN2_SOLLC	***-	Mannan endo-1,4-beta-mannosidase 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07616g02007.1			Unknown protein		
Niben101Scf09527g01016.1	sp|Q54DB1|CM2A2_DICDI	***-	Charged multivesicular body protein 2a homolog 2	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf00629g00005.1	sp|Q2KI54|ARMC8_BOVIN	***-	Armadillo repeat-containing protein 8	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02053g00003.1	sp|Q00379|1A12_CUCPE	***-	1-aminocyclopropane-1-carboxylate synthase 2	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01956g12001.1	AT2G38940.1	*-*-	phosphate transporter 1;4 LENGTH=534		
Niben101Scf11169g00005.1	sp|Q53MB8|TLPH_ORYSJ	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf02227g00003.1	sp|Q9SF40|RL4A_ARATH	***-	60S ribosomal protein L4-1	IPR002136 (Ribosomal protein L4/L1e), IPR023574 (Ribosomal protein L4 domain), IPR025755 (60S ribosomal protein L4, C-terminal domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Ctg10221g00002.1	sp|Q54MD1|PEX5_DICDI	--*-	Peroxisomal targeting signal 1 receptor		
Niben101Scf02847g00006.1			Unknown protein		
Niben101Scf01433g08029.1	AT4G38970.1	****	fructose-bisphosphate aldolase 2 LENGTH=398	IPR000741 (Fructose-bisphosphate aldolase, class-I), IPR013785 (Aldolase-type TIM barrel), IPR029768 (Fructose-bisphosphate aldolase class-I active site)	GO:0003824 (catalytic activity), GO:0004332 (fructose-bisphosphate aldolase activity), GO:0006096 (glycolytic process)
Niben101Scf03142g04008.1			Unknown protein		
Niben101Scf08519g02001.1	sp|Q4KL97|ANKR1_XENLA	*-*-	Ankyrin repeat domain-containing protein 1	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf00895g00016.1	sp|Q9FN32|YIPL7_ARATH	***-	Protein yippee-like		
Niben101Scf04132g03004.1	gb|KEH43918.1|	--*-	RING zinc finger protein, putative [Medicago truncatula]		
Niben101Scf01502g00010.1			Unknown protein		
Niben101Scf06236g03017.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf14977g00016.1	sp|Q8H6B1|SPT16_MAIZE	***-	FACT complex subunit SPT16	IPR000994 (Peptidase M24, structural domain), IPR013719 (Domain of unknown function DUF1747), IPR013953 (FACT complex subunit Spt16p/Cdc68p), IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	
Niben101Scf00662g04008.1	sp|Q42430|ZFP1_WHEAT	***-	Zinc finger protein 1	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf16764g00006.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf06914g00003.1	sp|P0A0A1|ODPB_STAAM	****	Pyruvate dehydrogenase E1 component subunit beta	IPR005475 (Transketolase-like, pyrimidine-binding domain), IPR005476 (Transketolase, C-terminal), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR027110 (Pyruvate dehydrogenase E1 component subunit beta), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0004739 (pyruvate dehydrogenase (acetyl-transferring) activity), GO:0006086 (acetyl-CoA biosynthetic process from pyruvate), GO:0008152 (metabolic process)
Niben101Scf04410g09008.1	AT5G07980.1	*-*-	dentin sialophosphoprotein-related LENGTH=1501		
Niben101Scf02622g12016.1	AT5G04550.1	***-	Protein of unknown function (DUF668) LENGTH=599	IPR007700 (Protein of unknown function DUF668), IPR021864 (Protein of unknown function DUF3475)	
Niben101Scf03551g00007.1	AT5G65590.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=316	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02416g01012.1	sp|Q42534|PME2_ARATH	*-**	Pectinesterase 2	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf04765g01001.1	AT4G21720.1	***-	unknown protein; Has 2692 Blast hits to 975 proteins in 186 species: Archae - 4; Bacteria - 460; Metazoa - 658; Fungi - 93; Plants - 1089; Viruses - 100; Other Eukaryotes - 288 (source: NCBI BLink). LENGTH=139		
Niben101Scf02049g03002.1	sp|Q13042|CDC16_HUMAN	***-	Cell division cycle protein 16 homolog	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07518g00007.1	sp|Q9UBC3|DNM3B_HUMAN	*-**	DNA (cytosine-5)-methyltransferase 3B	IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006306 (DNA methylation)
Niben101Scf03766g02017.1	sp|Q67ZU1|LIP2_ARATH	***-	Triacylglycerol lipase 2	IPR006693 (Partial AB-hydrolase lipase domain), IPR025483 (Lipase, eukaryotic), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04072g01009.1	dbj|BAD81757.1|	*-*-	aminotransferase-like [Oryza sativa Japonica Group]	IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf02699g00014.1	sp|F4IN58|PIEZO_ARATH	*-*-	Piezo-type mechanosensitive ion channel homolog		
Niben101Scf01655g04029.1	ref|NP_182107.3|	--*-	downstream target of AGL15 2 [Arabidopsis thaliana] gb|AEC10607.1| downstream target of AGL15 2 [Arabidopsis thaliana] gb|AHL38793.1| glycosyltransferase, partial [Arabidopsis thaliana]		
Niben101Scf01154g18012.1	sp|Q9LSW6|ACH10_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 10	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03422g00006.1	sp|Q9FFN1|PP363_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR001279 (Beta-lactamase-like), IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00273g02007.1	gb|ACG39131.1|	****	transferase, transferring glycosyl groups [Zea mays]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf00568g04017.1	ref|XP_002534699.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF27685.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05551g01007.1	sp|P51960|MYBA_MOUSE	*-*-	Myb-related protein A	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf09264g00002.1	sp|Q4JVD9|RUVB_CORJK	--**	Holliday junction ATP-dependent DNA helicase RuvB	IPR010339 (TIP49, C-terminal), IPR027238 (RuvB-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0043141 (ATP-dependent 5'-3' DNA helicase activity)
Niben101Scf12308g00006.1	sp|A8GAC4|NQRF_SERP5	*-**	Na(+)-translocating NADH-quinone reductase subunit F	IPR001221 (Phenol hydroxylase reductase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04705g00003.1	sp|Q38898|AKT2_ARATH	*-*-	Potassium channel AKT2/3	IPR014710 (RmlC-like jelly roll fold), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf09170g01016.1			Unknown protein		
Niben101Scf07854g00008.1	gb|EMT00230.1|	*-*-	Disease resistance protein RGA2 [Aegilops tauschii]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf09712g00005.1	sp|A1W9H6|F16PA_ACISJ	****	Fructose-1,6-bisphosphatase class 1	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf01731g01004.1	AT4G22770.1	*-*-	AT hook motif DNA-binding family protein LENGTH=334	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf04329g06013.1	sp|Q9FM89|FDL38_ARATH	*-*-	F-box/FBD/LRR-repeat protein	IPR006566 (FBD domain)	
Niben101Scf02122g02021.1	sp|Q0WL80|UGGG_ARATH	****	UDP-glucose:glycoprotein glucosyltransferase	IPR002495 (Glycosyl transferase, family 8), IPR009448 (UDP-glucose:Glycoprotein Glucosyltransferase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0003980 (UDP-glucose:glycoprotein glucosyltransferase activity), GO:0006486 (protein glycosylation), GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf33716g00003.1	gb|AIO11838.1|	*-**	heterotrimeric G-protein gamma subunit 5 [Brassica rapa]	IPR015898 (G-protein gamma-like domain)	GO:0004871 (signal transducer activity), GO:0005834 (heterotrimeric G-protein complex), GO:0007186 (G-protein coupled receptor signaling pathway)
Niben101Scf09989g01025.1	sp|Q08296|PPOF_SOLLC	*-**	Polyphenol oxidase F, chloroplastic	IPR008922 (Uncharacterised domain, di-copper centre)	GO:0004097 (catechol oxidase activity), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00863g08004.1			Unknown protein		
Niben101Scf01485g00001.1	sp|Q1T7B8|CENPO_CHICK	--**	Centromere protein O	IPR018464 (Centromere protein O)	GO:0000776 (kinetochore), GO:0034508 (centromere complex assembly)
Niben101Scf03706g01003.1	sp|Q6IE26|EPHX4_MOUSE	***-	Epoxide hydrolase 4	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf00863g01022.1	gb|AAU90304.1|	--*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf01061g08032.1	sp|Q5XET4|PP142_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf09548g00021.1			Unknown protein		
Niben101Scf03863g04001.1	emb|CDY47652.1|	***-	BnaC04g23890D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf03706g01004.1	sp|O49006|PME3_ARATH	****	Pectinesterase/pectinesterase inhibitor 3	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02749g02014.1			Unknown protein		
Niben101Scf01832g01009.1	ref|XP_002526350.1|	****	GTP binding protein, putative [Ricinus communis] gb|EEF36021.1| GTP binding protein, putative [Ricinus communis]	IPR006073 (GTP binding domain), IPR023179 (GTP-binding protein, orthogonal bundle domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf08422g00004.1	sp|Q3U9F6|RN166_MOUSE	--*-	RING finger protein 166	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf09447g00009.1	sp|P40024|ARB1_YEAST	****	ABC transporter ATP-binding protein ARB1	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf09505g01011.1	sp|B4SIF5|DPO4_STRM5	*-**	DNA polymerase IV	IPR001126 (DNA-repair protein, UmuC-like)	GO:0003684 (damaged DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006281 (DNA repair)
Niben101Scf00505g06008.1	AT1G77120.1	***-	alcohol dehydrogenase 1 LENGTH=379	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00550g00012.1	AT2G45460.3	*-*-	SMAD/FHA domain-containing protein LENGTH=916	IPR000580 (TSC-22 / Dip / Bun)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03643g02023.1			Unknown protein		
Niben101Scf12320g04004.1	sp|Q9LPS1|HXK3_ARATH	****	Hexokinase-3	IPR001312 (Hexokinase)	GO:0004396 (hexokinase activity), GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0006096 (glycolytic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf09989g01026.1	sp|Q08304|PPOB_SOLLC	*-*-	Polyphenol oxidase B, chloroplastic	IPR008922 (Uncharacterised domain, di-copper centre)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf05612g01006.1	AT1G06150.1	***-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=1322	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf04018g06003.1	sp|Q8S8F5|EF4L3_ARATH	***-	Protein ELF4-LIKE 3	IPR009741 (Protein of unknown function DUF1313)	
Niben101Scf00807g03028.1	sp|F4IME2|MSL8_ARATH	***-	Mechanosensitive ion channel protein 8	IPR006685 (Mechanosensitive ion channel MscS), IPR010920 (Like-Sm (LSM) domain)	GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01202g00007.1	emb|CDY17572.1|	*-*-	BnaC01g26960D [Brassica napus]		
Niben101Scf02755g04002.1	sp|Q6YXH8|CCD41_ORYSJ	***-	Cyclin-D4-1	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Ctg11133g00001.1	AT5G04040.1	*-*-	Patatin-like phospholipase family protein LENGTH=825		
Niben101Scf05188g03023.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07036g02003.1	sp|Q7XJE6|MCA1_ARATH	***-	Metacaspase-1	IPR005735 (Zinc finger, LSD1-type), IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf07480g00001.1	AT3G01740.1	***-	Mitochondrial ribosomal protein L37 LENGTH=126	IPR013870 (Ribosomal protein L37, mitochondrial)	
Niben101Scf39270g00002.1	sp|Q8S9G8|SPL7_ARATH	****	Squamosa promoter-binding-like protein 7	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf12134g00003.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06737g00030.1	sp|Q9NUQ7|UFSP2_HUMAN	*-*-	Ufm1-specific protease 2	IPR012462 (Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2)	
Niben101Scf01160g01003.1	sp|P27496|CB25_TOBAC	***-	Chlorophyll a-b binding protein 50, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf00747g12035.1	sp|Q7SY52|STK10_DANRE	*-**	Serine/threonine-protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00447g00001.1	sp|P51614|CHIT3_VITVI	***-	Acidic endochitinase	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf20034g00003.1	sp|Q9SRQ1|C89A9_ARATH	--*-	Cytochrome P450 89A9		
Niben101Scf01497g00002.1	sp|P44439|PCNB_HAEIN	*-*-	Poly(A) polymerase I	IPR002646 (Poly A polymerase, head domain)	GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf04410g09009.1			Unknown protein		
Niben101Scf00152g10003.1	AT1G19900.1	***-	glyoxal oxidase-related protein LENGTH=548	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf17398g00011.1	sp|Q9SFZ3|BH110_ARATH	*-*-	Transcription factor bHLH110		
Niben101Scf01507g00004.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf10559g01037.1	AT1G64530.1	*-*-	Plant regulator RWP-RK family protein LENGTH=841	IPR029016 (GAF domain-like)	
Niben101Scf14322g00008.1	AT3G56760.1	****	Protein kinase superfamily protein LENGTH=577	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04998g00006.1	ref|WP_008276936.1|	***-	polyketide cyclase [Cyanothece sp. CCY0110] gb|EAZ89954.1| hypothetical protein CY0110_07154 [Cyanothece sp. CCY0110]		
Niben101Scf00492g00010.1	AT2G36770.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf07798g03027.1	sp|P46291|RL38_SOLLC	***-	60S ribosomal protein L38	IPR002675 (Ribosomal protein L38e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf13684g00003.1	emb|CDY03795.1|	*-*-	BnaC01g29120D [Brassica napus]		
Niben101Scf06080g04011.1	sp|Q9FKQ3|H3L5_ARATH	*-*-	Histone H3-like 5	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf00963g02006.1	sp|O22938|Y2182_ARATH	--*-	Leucine-rich repeat receptor-like tyrosine-protein kinase	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf01795g02016.1	gb|AAU90303.2|	--**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf05955g03043.1	ref|WP_025942435.1|	*-*-	MULTISPECIES: oligoketide cyclase [Prochlorococcus]	IPR005031 (Streptomyces cyclase/dehydrase)	
Niben101Scf02930g00009.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf06286g01010.1	AT1G69780.1	***-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02805g07008.1	sp|Q9LJQ5|RTNLI_ARATH	***-	Reticulon-like protein B9	IPR003388 (Reticulon)	
Niben101Scf03515g00074.1	gb|EHK46506.1|	--*-	Ca2+ transporter [Trichoderma atroviride IMI 206040]		
Niben101Scf12266g09002.1	sp|Q9XI36|MBD10_ARATH	*-**	Methyl-CpG-binding domain-containing protein 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf32089g00003.1	sp|P56911|NUON2_RHIME	*-*-	NADH-quinone oxidoreductase subunit N 2	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf04430g00004.1			Unknown protein		
Niben101Scf17922g01005.1	AT2G34630.2	***-	geranyl diphosphate synthase 1 LENGTH=422	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf00872g01004.1			Unknown protein		
Niben101Scf08033g02010.1	sp|Q82WN0|TATB_NITEU	*-*-	Sec-independent protein translocase protein TatB		
Niben101Scf04875g00002.1	AT2G37730.1	*-*-	Protein of unknown function (DUF604) LENGTH=532	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf04951g03007.1	sp|Q9ZCU4|SYI_RICPR	--*-	Isoleucine--tRNA ligase		
Niben101Scf07761g01004.1			Unknown protein		
Niben101Scf00270g13015.1	sp|O64517|MCA4_ARATH	***-	Metacaspase-4	IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf07158g00021.1	sp|Q6P4R8|NFRKB_HUMAN	*-*-	Nuclear factor related to kappa-B-binding protein	IPR024867 (Nuclear factor related to kappa-B-binding protein)	GO:0031011 (Ino80 complex)
Niben101Scf01414g02009.1	sp|Q9SHJ5|GPAT1_ARATH	***-	Glycerol-3-phosphate acyltransferase 1		
Niben101Scf02339g00005.1	AT4G14615.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages;		
Niben101Scf06112g01006.1	sp|Q94A43|BEH2_ARATH	***-	BES1/BZR1 homolog protein 2	IPR008540 (BZR1, transcriptional repressor)	
Niben101Scf04113g14002.1	gb|KFC75011.1|	***-	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Bosea sp. LC85]	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01984g00019.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02891g00012.1	AT3G02700.1	***-	NC domain-containing protein-related LENGTH=252	IPR007053 (LRAT-like domain)	
Niben101Scf00527g03001.1	AT1G62770.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=204	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00487g04004.1	sp|A8F720|GLGA_THELT	--*-	Glycogen synthase		
Niben101Scf03133g01015.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf17612g02001.1	ref|XP_003595157.1|	-***	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf02119g00009.1			Unknown protein		
Niben101Scf06788g00009.1			Unknown protein		
Niben101Scf22680g01001.1	AT2G34510.1	***-	Protein of unknown function, DUF642 LENGTH=401	IPR006946 (Protein of unknown function DUF642), IPR008979 (Galactose-binding domain-like)	
Niben101Scf00046g03003.1	sp|P09926|SURF2_MOUSE	--*-	Surfeit locus protein 2	IPR008833 (Surfeit locus 2)	
Niben101Scf09211g00011.1	AT2G05940.1	****	Protein kinase superfamily protein LENGTH=462	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01365g06005.1	sp|A7MBJ2|SENP7_BOVIN	*-*-	Sentrin-specific protease 7	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf11182g02003.1	sp|Q9C866|PPR65_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05486g00009.1	sp|B0USP0|SYV_HISS2	****	Valine--tRNA ligase	IPR002303 (Valine-tRNA ligase), IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)	GO:0000166 (nucleotide binding), GO:0002161 (aminoacyl-tRNA editing activity), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004832 (valine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006438 (valyl-tRNA aminoacylation)
Niben101Scf03255g00002.1	AT1G18560.1	***-	BED zinc finger ;hAT family dimerisation domain LENGTH=690	IPR008906 (HAT dimerisation domain, C-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0046983 (protein dimerization activity)
Niben101Scf02139g04001.1	sp|Q9SYZ9|TAF8_ARATH	***-	Transcription initiation factor TFIID subunit 8	IPR006565 (Bromodomain transcription factor), IPR019473 (Transcription factor TFIID, subunit 8, C-terminal)	
Niben101Scf06023g01005.1			Unknown protein		
Niben101Scf32679g00004.1	sp|A7SLC8|NAT9_NEMVE	****	N-acetyltransferase 9-like protein	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf02168g02011.1	sp|Q9LNG5|PPP7L_ARATH	--*-	Serine/threonine-protein phosphatase 7 long form homolog		
Niben101Scf04133g01006.1	sp|Q0WKZ3|PP105_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf22035g00002.1	AT5G52910.1	*-*-	timeless family protein LENGTH=1141	IPR006906 (Timeless protein), IPR007725 (Timeless C-terminal)	
Niben101Scf03814g00007.1			Unknown protein		
Niben101Scf03683g01002.1	gb|ABD33242.1|	***-	Hemopexin, related [Medicago truncatula]		
Niben101Scf04767g00007.1	sp|Q54UC9|KIF3_DICDI	*-**	Kinesin-related protein 3	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf09153g05012.1	sp|Q9LNI5|ETC1_ARATH	*-*-	MYB-like transcription factor ETC1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05437g03008.1	ref|XP_002511312.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF51914.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06186g04004.1	sp|A1L272|S29A4_DANRE	****	Equilibrative nucleoside transporter 4	IPR002259 (Equilibrative nucleoside transporter)	GO:0005337 (nucleoside transmembrane transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf09644g00009.1	sp|Q9C519|WRKY6_ARATH	*-**	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04024g01003.1			Unknown protein		
Niben101Scf03239g05026.1	sp|O82352|RTNLE_ARATH	***-	Reticulon-like protein B5	IPR003388 (Reticulon)	
Niben101Scf21257g00017.1			Unknown protein	IPR023155 (Cytochrome c-552/4)	
Niben101Scf03045g02020.1	sp|A7FHJ7|MDTK_YERP3	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00192g01027.1			Unknown protein		
Niben101Scf17635g01013.1	emb|CDX68480.1|	--*-	BnaC01g25580D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf03766g01021.1	AT1G74780.1	*-*-	Nodulin-like / Major Facilitator Superfamily protein LENGTH=533	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf02151g04021.1	sp|Q94JW8|SPL6_ARATH	****	Squamosa promoter-binding-like protein 6	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf01724g00007.1			Unknown protein		
Niben101Scf01318g02011.1			Unknown protein		
Niben101Scf00247g02010.1	sp|Q6L545|GID1_ORYSJ	***-	Gibberellin receptor GID1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Ctg12957g00001.1	sp|Q9SLG0|NFYB1_ARATH	--*-	Nuclear transcription factor Y subunit B-1	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf08785g02015.1	sp|Q9SXA1|P4KA1_ARATH	*-**	Phosphatidylinositol 4-kinase alpha 1	IPR015433 (Phosphatidylinositol Kinase)	GO:0046854 (phosphatidylinositol phosphorylation), GO:0048015 (phosphatidylinositol-mediated signaling)
Niben101Scf00307g01030.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05669g02015.1	sp|Q86A97|TSSC1_DICDI	*-*-	Protein tssc1 homolog		
Niben101Scf08341g07009.1	AT4G13370.1	***-	Plant protein of unknown function (DUF936) LENGTH=673	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Scf04995g05002.1	sp|Q9SND4|HEC2_ARATH	*-*-	Transcription factor HEC2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01385g01012.1	AT2G26540.1	****	uroporphyrinogen-III synthase family protein LENGTH=321	IPR003754 (Tetrapyrrole biosynthesis, uroporphyrinogen III synthase)	GO:0004852 (uroporphyrinogen-III synthase activity), GO:0033014 (tetrapyrrole biosynthetic process)
Niben101Scf01823g02010.1	sp|P25076|CY11_SOLTU	*-**	Cytochrome c1-1, heme protein, mitochondrial	IPR002326 (Cytochrome c1)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf00751g06008.1	AT2G43890.1	*-*-	Pectin lyase-like superfamily protein LENGTH=392	IPR011050 (Pectin lyase fold/virulence factor)	
Niben101Scf09629g00002.1	sp|O42260|GEMI2_XENLA	***-	Gem-associated protein 2	IPR007022 (Gem-associated protein 2)	GO:0000387 (spliceosomal snRNP assembly), GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf13926g01003.1	sp|Q5M8G4|LRC40_XENTR	*-*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf04216g02005.1	sp|Q9SUY0|FB244_ARATH	*-*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf00160g10001.1	sp|O65355|GGH2_ARATH	****	Gamma-glutamyl hydrolase 2	IPR011697 (Peptidase C26), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003824 (catalytic activity), GO:0006541 (glutamine metabolic process), GO:0008242 (omega peptidase activity), GO:0016787 (hydrolase activity)
Niben101Scf11806g00009.1	AT3G26560.1	*-**	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001579 (Glycoside hydrolase, chitinase active site), IPR001650 (Helicase, C-terminal), IPR002483 (PWI domain), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0004386 (helicase activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0006397 (mRNA processing), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf01626g03001.1			Unknown protein		
Niben101Scf00270g11006.1	sp|Q9MA44|SIPL5_ARATH	****	Signal peptide peptidase-like 5	IPR006639 (Presenilin/signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf07585g00047.1	sp|Q5XAD7|DNAJ_STRP6	***-	Chaperone protein DnaJ	IPR012724 (Chaperone DnaJ)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0009408 (response to heat), GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf02074g05021.1			Unknown protein		
Niben101Scf00361g01003.1	sp|P0CC46|NU2C1_CITSI	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf04276g04018.1	AT4G25800.1	***-	Calmodulin-binding protein LENGTH=601	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf11150g01003.1	AT5G65170.1	*-*-	VQ motif-containing protein LENGTH=362	IPR008889 (VQ)	
Niben101Scf06976g00013.1	AT1G80690.1	***-	PPPDE putative thiol peptidase family protein LENGTH=227	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf10055g02004.1	AT4G19460.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=516	IPR001296 (Glycosyl transferase, family 1), IPR028098 (Glycosyltransferase subfamily 4, N-terminal domain)	GO:0009058 (biosynthetic process)
Niben101Scf03773g00009.1	sp|Q9FE67|ERF80_ARATH	*-**	Ethylene-responsive transcription factor 9	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04316g03004.1	AT1G30040.1	***-	gibberellin 2-oxidase LENGTH=341	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00173g00019.1	sp|B4JWR9|NFU1_DROGR	****	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial	IPR017065 (HIRA-interacting protein 5)	GO:0005506 (iron ion binding), GO:0005737 (cytoplasm), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf23998g01015.1	AT2G31820.1	***-	Ankyrin repeat family protein LENGTH=662	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf02078g04010.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00781g03013.1	sp|O23515|RL151_ARATH	*-*-	60S ribosomal protein L15-1	IPR000439 (Ribosomal protein L15e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09729g00023.1	AT5G55660.1	*-*-	DEK domain-containing chromatin associated protein LENGTH=778	IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding)
Niben101Scf01370g00018.1	gb|ABV21218.1|	*-*-	[Arabidopsis thaliana]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf01022g00013.1	AT3G06560.1	****	poly(A) polymerase 3 LENGTH=507	IPR007012 (Poly(A) polymerase, central domain), IPR011068 (Nucleotidyltransferase, class I, C-terminal-like)	GO:0003723 (RNA binding), GO:0004652 (polynucleotide adenylyltransferase activity), GO:0005634 (nucleus), GO:0016779 (nucleotidyltransferase activity), GO:0031123 (RNA 3'-end processing), GO:0043631 (RNA polyadenylation)
Niben101Scf01209g00005.1	sp|Q9M145|RTNLG_ARATH	*-*-	Reticulon-like protein B7	IPR003388 (Reticulon)	
Niben101Scf01931g06006.1	sp|Q9Z311|MECR_RAT	****	Trans-2-enoyl-CoA reductase, mitochondrial	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00271g09020.1			Unknown protein		
Niben101Scf01400g02009.1	sp|P68556|ACT1_DIPDE	***-	Actin-1/4	IPR004000 (Actin family)	
Niben101Scf06156g02007.1	sp|Q9XGD5|CAMT2_MAIZE	****	Caffeoyl-CoA O-methyltransferase 2	IPR002935 (O-methyltransferase, family 3), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008171 (O-methyltransferase activity)
Niben101Scf20470g00007.1	sp|Q2MI99|YCF3_SOLLC	*-*-	Photosystem I assembly protein Ycf3		
Niben101Scf10815g01004.1	AT1G48910.1	****	Flavin-containing monooxygenase family protein LENGTH=383	IPR000103 (Pyridine nucleotide-disulphide oxidoreductase, class-II), IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08157g02012.1	AT2G28260.1	***-	cyclic nucleotide-gated channel 15 LENGTH=678	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf06357g00013.1	sp|O23006|LYM2_ARATH	***-	LysM domain-containing GPI-anchored protein 2	IPR018392 (LysM domain)	
Niben101Scf08926g07008.1	AT2G38610.1	****	RNA-binding KH domain-containing protein LENGTH=286	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf07036g03006.1	sp|Q9XGY5|TIM13_ORYSJ	***-	Mitochondrial import inner membrane translocase subunit Tim13	IPR004217 (Tim10/DDP family zinc finger)	
Niben101Scf31976g00009.1	sp|Q9LY84|GDL76_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf05057g05009.1	sp|Q9FIF3|RS82_ARATH	*-*-	40S ribosomal protein S8-2	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10222g04003.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00765g02011.1	sp|Q54YW8|RPAB3_DICDI	****	DNA-directed RNA polymerases I, II, and III subunit rpabc3	IPR005570 (RNA polymerase, Rpb8)	GO:0006351 (transcription, DNA-templated)
Niben101Scf01142g03007.1	sp|Q67PA6|SYP_SYMTH	****	Proline--tRNA ligase	IPR002316 (Proline-tRNA ligase, class IIa), IPR017449 (Prolyl-tRNA synthetase, class II)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004827 (proline-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006433 (prolyl-tRNA aminoacylation)
Niben101Scf01460g03012.1	AT2G01120.2	****	origin recognition complex subunit 4 LENGTH=424	IPR003959 (ATPase, AAA-type, core), IPR016527 (Origin recognition complex, subunit 4), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000808 (origin recognition complex), GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006260 (DNA replication)
Niben101Scf09955g00004.1			Unknown protein		
Niben101Scf06596g03021.1	sp|Q9LW49|ERF4_NICSY	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02631g00009.1	AT4G33985.1	***-	Protein of unknown function (DUF1685) LENGTH=154	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf05553g01006.1	AT1G78240.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=684	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf00271g07003.1	sp|B6JE08|RPIA_OLICO	****	Ribose-5-phosphate isomerase A	IPR004788 (Ribose 5-phosphate isomerase, type A)	GO:0004751 (ribose-5-phosphate isomerase activity), GO:0009052 (pentose-phosphate shunt, non-oxidative branch)
Niben101Scf00239g07005.1	sp|O03376|AOX3_SOYBN	****	Alternative oxidase 3, mitochondrial	IPR002680 (Alternative oxidase)	GO:0009916 (alternative oxidase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02949g09006.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf02305g01015.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000742 (Epidermal growth factor-like domain), IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf17760g00015.1	AT4G35260.1	****	isocitrate dehydrogenase 1 LENGTH=367	IPR001804 (Isocitrate and isopropylmalate dehydrogenases family), IPR024084 (Isopropylmalate dehydrogenase-like domain)	GO:0000287 (magnesium ion binding), GO:0004449 (isocitrate dehydrogenase (NAD+) activity), GO:0006099 (tricarboxylic acid cycle), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01426g00001.1	sp|Q9LW49|ERF4_NICSY	****	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07586g02008.1	sp|Q7ZWF4|RN145_DANRE	*-*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf11813g01028.1			Unknown protein		
Niben101Scf04008g01001.1	gb|ABA97040.1|	*-*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf00559g03002.1	sp|Q6CME1|RTC1_KLULA	--*-	Restriction of telomere capping protein 1		
Niben101Scf31228g00007.1	sp|Q7W515|HEMH_BORPA	--*-	Ferrochelatase		
Niben101Scf08011g00011.1	AT3G56380.1	***-	response regulator 17 LENGTH=153	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf00530g10010.1	sp|P49598|P2C37_ARATH	*-**	Protein phosphatase 2C 37	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf03700g00011.1	AT3G12210.2	****	DNA binding LENGTH=209	IPR011257 (DNA glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair)
Niben101Scf16457g00008.1	sp|Q9N0E7|MOCOS_BOVIN	***-	Molybdenum cofactor sulfurase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02133g04009.1	emb|CDY43795.1|	***-	BnaA06g23310D [Brassica napus]		
Niben101Scf00728g00006.1	AT3G63090.1	*-*-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=404	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf06743g00018.1	AT4G11610.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1011	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf01131g00001.1	emb|CDY52413.1|	***-	BnaCnng22340D [Brassica napus]	IPR024738 (Transcriptional coactivator Hfi1/Transcriptional adapter 1)	GO:0070461 (SAGA-type complex)
Niben101Scf01848g04005.1	sp|C3N5S0|EF2_SULIA	***-	Elongation factor 2	IPR000640 (Translation elongation factor EFG, V domain), IPR009000 (Translation protein, beta-barrel domain), IPR009022 (Elongation factor G, III-V domain), IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0005525 (GTP binding)
Niben101Scf01887g07003.1			Unknown protein	IPR029472 (Gag-polypeptide of LTR copia-type)	
Niben101Scf00799g00010.1	AT1G77460.1	****	Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein LENGTH=2136	IPR000008 (C2 domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf05822g01004.1	emb|CBR23889.1|	*-*-	Ycf1 protein [Olea europaea subsp. cuspidata]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf10199g00003.1	sp|P82787|DEF19_ARATH	***-	Defensin-like protein 19	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf07327g03021.1	sp|Q9XEA8|CYSK2_ORYSJ	****	Cysteine synthase	IPR005856 (Cysteine synthase K/M)	GO:0004124 (cysteine synthase activity), GO:0006535 (cysteine biosynthetic process from serine)
Niben101Scf05371g03001.1	sp|Q10716|CYSP1_MAIZE	*-**	Cysteine proteinase 1	IPR013128 (Peptidase C1A)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf03018g01001.1	sp|Q8VH51|RBM39_MOUSE	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00058g01002.1	emb|CDY37278.1|	-**-	BnaA01g24980D [Brassica napus]		
Niben101Scf10866g01003.1	AT3G28960.1	*-*-	Transmembrane amino acid transporter family protein LENGTH=405	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf02306g02008.1	sp|Q99LZ3|SLD5_MOUSE	*-*-	DNA replication complex GINS protein SLD5	IPR021151 (GINS complex)	
Niben101Scf20209g00005.1	AT4G02900.1	***-	ERD (early-responsive to dehydration stress) family protein LENGTH=785	IPR003864 (Domain of unknown function DUF221)	GO:0016020 (membrane)
Niben101Scf08121g02005.1	emb|CDY26579.1|	***-	BnaA09g46980D [Brassica napus]		
Niben101Scf01494g14001.1	sp|B5X1G3|GPHR_SALSA	--*-	Golgi pH regulator		
Niben101Scf03515g00031.1	sp|A4GG97|PSAA_PHAVU	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00638g01004.1	sp|O23474|PER40_ARATH	****	Peroxidase 40	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02124g01003.1	sp|P41753|HSP70_ACHKL	***-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf03716g04007.1	gb|KEH44490.1|	***-	DUF674 family protein [Medicago truncatula]	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf02073g01013.1	sp|Q8H038|KATAM_ORYSJ	***-	Xyloglucan galactosyltransferase KATAMARI1 homolog	IPR004263 (Exostosin-like)	
Niben101Scf04194g00022.1	sp|B3PMU1|EFTU_MYCA5	*-*-	Elongation factor Tu	IPR000795 (Elongation factor, GTP-binding domain), IPR001890 (RNA-binding, CRM domain), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003723 (RNA binding), GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf04327g02018.1	sp|Q41188|CSP2_ARATH	*-*-	Cold shock protein 2	IPR001878 (Zinc finger, CCHC-type), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf15515g01002.1	sp|Q9LZZ7|SKA1_ARATH	***-	Spindle and kinetochore-associated protein 1 homolog	IPR009829 (Protein of unknown function DUF1395)	
Niben101Scf00911g00001.1	sp|Q9SRM9|ALMT8_ARATH	****	Aluminum-activated malate transporter 8	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf09590g02001.1	sp|P51090|CHSY_VITVI	***-	Chalcone synthase	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0009058 (biosynthetic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf17477g00010.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf24889g00004.1	sp|P09443|LE19_GOSHI	***-	Late embryogenesis abundant protein D-19	IPR000389 (Stress induced protein)	
Niben101Scf16244g02036.1	sp|A6VGV7|RS10_METM7	****	30S ribosomal protein S10	IPR001848 (Ribosomal protein S10), IPR027486 (Ribosomal protein S10 domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf03595g05001.1	sp|Q8H038|KATAM_ORYSJ	*-*-	Xyloglucan galactosyltransferase KATAMARI1 homolog	IPR004263 (Exostosin-like)	
Niben101Scf02468g09002.1	sp|Q41005|CBPX_PEA	****	Serine carboxypeptidase-like	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00536g03005.1	AT3G58630.1	***-	sequence-specific DNA binding transcription factors LENGTH=321		
Niben101Scf05554g01005.1	sp|Q2U9B0|BRE1_ASPOR	*-*-	E3 ubiquitin-protein ligase bre1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02503g01006.1	AT1G28240.1	***-	Protein of unknown function (DUF616) LENGTH=581	IPR006852 (Protein of unknown function DUF616)	
Niben101Scf15979g01004.1	sp|P25076|CY11_SOLTU	****	Cytochrome c1-1, heme protein, mitochondrial	IPR002326 (Cytochrome c1)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf01958g00002.1	sp|Q9M0M5|SCL13_ARATH	*-*-	Scarecrow-like protein 13	IPR005202 (Transcription factor GRAS), IPR030005 (Scarecrow-like protein 13)	
Niben101Scf03403g00001.1	AT4G24480.1	****	Protein kinase superfamily protein LENGTH=956	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07848g00003.1	sp|P23432|E13C_TOBAC	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07428g02006.1	ref|XP_002531087.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF31301.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04279g03004.1	AT1G67785.1	***-	unknown protein; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=63		
Niben101Scf01169g04027.1	sp|Q05935|MYBA_XENLA	*-*-	Myb-related protein A	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04554g04002.1			Unknown protein		
Niben101Scf04114g01049.1	sp|C3PLS6|NUOH_RICAE	--*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf04286g00018.1	AT1G48450.1	***-	Protein of unknown function (DUF760) LENGTH=423	IPR008479 (Protein of unknown function DUF760)	
Niben101Scf07593g03013.1	AT5G11030.2	***-	aberrant lateral root formation 4 LENGTH=602	IPR013877 (YAP-binding/ALF4/Glomulin)	
Niben101Scf10492g00004.1	AT5G25310.1	***-	Exostosin family protein LENGTH=480	IPR004263 (Exostosin-like)	
Niben101Scf02466g04001.1	sp|P10987|ACT1_DROME	***-	Actin-5C	IPR004000 (Actin family)	
Niben101Scf09025g02013.1	sp|Q8GWQ6|Y6344_ARATH	***-	UPF0235 protein	IPR003746 (Protein of unknown function DUF167)	
Niben101Scf00571g00006.1	sp|O23095|RLA12_ARATH	--*-	60S acidic ribosomal protein P1-2		
Niben101Scf08564g01012.1	gb|KEH19248.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00402g04001.1	sp|P53756|PDR18_YEAST	****	ABC transporter ATP-binding protein/permease PDR18	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf01326g00001.1	ref|NP_197030.2|	****	rib [Arabidopsis thaliana]	IPR008195 (Ribosomal protein L34Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00109g00001.1	sp|A9IXE7|GPMA_BART1	*-*-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf34129g00003.1	sp|Q9FIT9|HS217_ARATH	*-*-	21.7 kDa class VI heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf38491g00003.1	gb|AAF70826.1|AF157556_1	*-*-	meiotic asynaptic mutant 1 [Arabidopsis thaliana]		
Niben101Scf00870g06017.1	sp|Q94AU2|SEC22_ARATH	*-*-	25.3 kDa vesicle transport protein		
Niben101Scf05368g02002.1	sp|O80933|SCL9_ARATH	***-	Scarecrow-like protein 9	IPR005202 (Transcription factor GRAS)	
Niben101Scf01827g02004.1	ref|XP_007012478.1|	***-	Hydroxyproline-rich glycoprotein family protein [Theobroma cacao] gb|EOY30097.1| Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]		
Niben101Scf00542g07001.1	gb|KEH28697.1|	*-*-	lactoylglutathione lyase/glyoxalase I family protein [Medicago truncatula]	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf00218g04009.1	sp|O00061|CP67_UROFA	--*-	Cytochrome P450 67	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf36335g00011.1	sp|Q6DR10|TBL43_ARATH	*-*-	Protein trichome birefringence-like 43	IPR026057 (PC-Esterase)	
Niben101Scf02090g07012.1	sp|Q5ZLL6|MSMO1_CHICK	*-*-	Methylsterol monooxygenase 1	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02625g03003.1	sp|Q9SR92|STR10_ARATH	--*-	Rhodanese-like domain-containing protein 10		
Niben101Scf02437g02018.1	sp|Q9LSY5|U71B7_ARATH	*-*-	UDP-glycosyltransferase 71B7		
Niben101Scf05921g02001.1	sp|Q6AT25|C3H34_ORYSJ	--*-	Zinc finger CCCH domain-containing protein 34		
Niben101Scf10305g01024.1	ref|XP_002871133.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH47392.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf02908g06011.1	AT4G35160.1	****	O-methyltransferase family protein LENGTH=382	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf00959g00017.1	sp|Q9FMC2|BZP43_ARATH	***-	Basic leucine zipper 43	IPR004827 (Basic-leucine zipper domain), IPR006886 (DNA-directed RNA polymerase III subunit Rpc5)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02207g11005.1	sp|Q96N64|PWP2A_HUMAN	*-*-	PWWP domain-containing protein 2A	IPR000313 (PWWP domain)	
Niben101Scf01292g02011.1	gb|KEH29360.1|	--**	plant invertase/pectin methylesterase inhibitor [Medicago truncatula]	IPR006501 (Pectinesterase inhibitor domain), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00163g03001.1	AT2G33585.1	***-	unknown protein; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=193		
Niben101Scf02048g01005.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf12813g00004.1	sp|P25802|CYSP1_OSTOS	*-**	Cathepsin B-like cysteine proteinase 1	IPR000118 (Granulin), IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf06256g01001.1	sp|O04153|CALR3_ARATH	***-	Calreticulin-3	IPR001580 (Calreticulin/calnexin), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005783 (endoplasmic reticulum), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf16107g00007.1	sp|Q96520|PER12_ARATH	****	Peroxidase 12	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00406g05008.1	ref|WP_015113724.1|	*-*-	ABC-1 domain-containing protein [N [Nostoc sp. PCC 7107]		
Niben101Scf03019g03005.1	sp|Q6L5F7|MPK17_ORYSJ	****	Mitogen-activated protein kinase 17	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02372g00010.1	emb|CDY26654.1|	*-*-	BnaA09g46230D [Brassica napus]		
Niben101Scf01362g03006.1	AT1G69780.1	***-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01758g00006.1	AT5G19473.1	***-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=99		
Niben101Scf04444g00007.1	sp|Q9CZT4|RPC5_MOUSE	*-**	DNA-directed RNA polymerase III subunit RPC5	IPR006886 (DNA-directed RNA polymerase III subunit Rpc5)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf00629g00006.1	sp|O81263|KITH_ORYSJ	*-**	Thymidine kinase	IPR001267 (Thymidine kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004797 (thymidine kinase activity), GO:0005524 (ATP binding)
Niben101Scf00366g03012.1	sp|O65874|MTF1_PEA	****	MADS-box transcription factor 1	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf01557g00014.1	sp|Q8LPL6|AP2A1_ARATH	****	AP-2 complex subunit alpha-1	IPR009028 (Coatomer/calthrin adaptor appendage, C-terminal subdomain), IPR013041 (Coatomer/clathrin adaptor appendage, Ig-like subdomain), IPR016024 (Armadillo-type fold), IPR017104 (Adaptor protein complex AP-2, alpha subunit)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030131 (clathrin adaptor complex)
Niben101Scf07182g01006.1	sp|Q0SZA5|FIEF_SHIF8	-***	Cation-efflux pump FieF	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain), IPR027470 (Cation efflux protein cytoplasmic domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf11130g00004.1	sp|Q6A662|DNAJ2_PROAC	--*-	Chaperone protein DnaJ 2	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf14194g00002.1	sp|Q8BGI7|LRC39_MOUSE	*-*-	Leucine-rich repeat-containing protein 39	IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0043531 (ADP binding)
Niben101Scf04594g00002.1	sp|Q4JV82|MIAA_CORJK	****	tRNA dimethylallyltransferase	IPR002627 (tRNA isopentenyltransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf04406g00012.1	gb|KEH17295.1|	*-*-	cytochrome P450 family 72 protein [Medicago truncatula]		
Niben101Scf01964g04001.1	ref|XP_007046458.1|	*-*-	Trigalactosyldiacylglycerol 1 isoform 5 [Theobroma cacao] gb|EOX90615.1| Trigalactosyldiacylglycerol 1 isoform 5 [Theobroma cacao]		
Niben101Scf39383g00001.1	sp|Q94A40|COPA1_ARATH	*-*-	Coatomer subunit alpha-1	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf07823g00002.1	sp|A5G9B6|NUOD_GEOUR	****	NADH-quinone oxidoreductase subunit D	IPR014029 (NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site), IPR022885 (NAD(P)H-quinone oxidoreductase subunit D/H), IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05142g00021.1	sp|P0CC94|NU2C1_NANDO	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic		
Niben101Scf12956g00001.1			Unknown protein		
Niben101Scf03792g00001.1	sp|Q4L3I4|CLPC_STAHJ	*-**	ATP-dependent Clp protease ATP-binding subunit ClpC	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf06404g00013.1	sp|P53632|PAP2_YEAST	*-*-	Poly(A) RNA polymerase protein 2	IPR002058 (PAP/25A-associated), IPR002934 (Nucleotidyl transferase domain)	GO:0016779 (nucleotidyltransferase activity)
Niben101Scf02854g09007.1	gb|AES70969.2|	***-	calmodulin-binding heat-shock protein [Medicago truncatula]	IPR005592 (Mono-/di-acylglycerol lipase, N-terminal), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0016042 (lipid catabolic process)
Niben101Scf08873g00008.1	AT3G48240.1	*-*-	Octicosapeptide/Phox/Bem1p family protein LENGTH=180	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf02755g02003.1			Unknown protein		
Niben101Scf08844g00002.1	ref|XP_007021195.1|	--*-	S-locus lectin protein kinase family protein, putative [Theobroma cacao] gb|EOY12720.1| S-locus lectin protein kinase family protein, putative [Theobroma cacao]		
Niben101Scf00077g08010.1	sp|P85191|CP450_HELAN	***-	Cytochrome P450	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00317g09014.1	sp|P24102|PER22_ARATH	****	Peroxidase 22	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02459g10005.1	AT1G33800.1	***-	Protein of unknown function (DUF579) LENGTH=297	IPR021148 (Putative polysaccharide biosynthesis protein)	
Niben101Scf00994g06008.1	sp|Q14839|CHD4_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 4	IPR009057 (Homeodomain-like), IPR009462 (Domain of unknown function DUF1086), IPR009463 (Domain of unknown function DUF1087), IPR012957 (CHD, C-terminal 2)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf00360g00008.1	AT3G26300.1	***-	cytochrome P450, family 71, subfamily B, polypeptide 34 LENGTH=500	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08921g02030.1	sp|Q9K706|GNGF_BACHD	***-	Gluconeogenesis factor	IPR002882 (LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052)	
Niben101Ctg15371g00001.1	gb|KEH39497.1|	*-**	Myb-like DNA-binding domain protein [Medicago truncatula]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf01917g03006.1			Unknown protein		
Niben101Scf07465g02002.1	sp|P93024|ARFE_ARATH	****	Auxin response factor 5	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf33183g00001.1	AT2G01190.1	*-*-	Octicosapeptide/Phox/Bem1p family protein LENGTH=720	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf06437g02001.1	sp|F4IWA8|TBL41_ARATH	***-	Protein trichome birefringence-like 41	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf02486g05002.1	AT3G05910.1	***-	Pectinacetylesterase family protein LENGTH=415	IPR004963 (Protein notum homologue)	
Niben101Scf05402g00005.1	emb|CDY26040.1|	***-	BnaC06g05840D [Brassica napus]		
Niben101Scf05409g00003.1	sp|Q6Z844|COPZ2_ORYSJ	***-	Coatomer subunit zeta-2	IPR011012 (Longin-like domain)	GO:0006810 (transport)
Niben101Scf00348g05006.1	sp|Q9M390|PTR1_ARATH	***-	Protein NRT1/ PTR FAMILY 8.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf05290g00011.1	sp|Q93ZT5|EDL3_ARATH	***-	EID1-like F-box protein 3		
Niben101Scf00664g00017.1	sp|Q5RCF8|DHRS4_PONAB	***-	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	
Niben101Scf04551g01014.1			Unknown protein		
Niben101Scf02293g00005.1	sp|P81394|MYB15_ANTMA	*-*-	Myb-related protein 315	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02625g01009.1	AT5G50240.1	****	protein-l-isoaspartate methyltransferase 2 LENGTH=309	IPR000682 (Protein-L-isoaspartate(D-aspartate) O-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0004719 (protein-L-isoaspartate (D-aspartate) O-methyltransferase activity), GO:0006464 (cellular protein modification process)
Niben101Scf04537g01022.1			Unknown protein		
Niben101Scf12708g01003.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03989g02025.1	ATMG00660.1	***-	hypothetical protein chrM:190104-190553 REVERSE LENGTH=149		
Niben101Scf04921g01007.1	sp|Q6Q9I2|MAD15_ORYSJ	--*-	MADS-box transcription factor 15	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01238g01006.1	gb|AGT97382.1|	***-	EG5651 [Manihot esculenta]		
Niben101Scf01943g11007.1	sp|Q8H125|SCL5_ARATH	***-	Scarecrow-like protein 5	IPR005202 (Transcription factor GRAS), IPR030018 (Scarecrow-like protein 5/chitin-inducible gibberellin-responsive protein 2)	
Niben101Scf04881g02003.1	sp|P56812|PDCD5_MOUSE	--*-	Programmed cell death protein 5	IPR002836 (PDCD5-related protein)	GO:0003677 (DNA binding)
Niben101Scf14636g02013.1	sp|Q8ZW52|RL3_PYRAE	***-	50S ribosomal protein L3	IPR000597 (Ribosomal protein L3), IPR009000 (Translation protein, beta-barrel domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09698g01001.1	emb|CDX72026.1|	--*-	BnaC08g28480D [Brassica napus]		
Niben101Scf02887g00007.1	sp|Q9FJL8|RP5L1_ARATH	****	DNA-directed RNA polymerase subunit 5-like protein 1	IPR000783 (RNA polymerase, subunit H/Rpb5 C-terminal), IPR005571 (RNA polymerase, Rpb5, N-terminal), IPR020609 (Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf03254g13004.1	gb|KEH17617.1|	*-*-	structural constituent of cell wall protein, putative [Medicago truncatula]	IPR010820 (Protein of unknown function DUF1421)	
Niben101Scf22899g00002.1	AT3G17840.1	*-*-	receptor-like kinase 902 LENGTH=647	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01795g16008.1	gb|KEH22373.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00683g03017.1	AT1G34520.1	*-*-	MBOAT (membrane bound O-acyl transferase) family protein LENGTH=336		
Niben101Scf00700g00005.1	sp|Q9LUE2|TPS18_ARATH	****	Terpenoid synthase 18	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf08863g01008.1	sp|Q8NBX0|SCPDL_HUMAN	***-	Saccharopine dehydrogenase-like oxidoreductase		
Niben101Scf19719g01004.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf05005g02007.1	gb|KEH24214.1|	***-	harpin-induced-like protein [Medicago truncatula]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf00095g07001.1	AT5G03795.1	***-	Exostosin family protein LENGTH=518	IPR004263 (Exostosin-like)	
Niben101Scf15694g00009.1	sp|Q62176|RBM38_MOUSE	*-**	RNA-binding protein 38	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04950g05003.1	ref|XP_002529395.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF32991.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06203g02016.1	sp|A9IR54|CLPP_BORPD	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03773g00002.1	AT2G46320.1	***-	Mitochondrial substrate carrier family protein LENGTH=361	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf14102g00002.1	gb|AES64334.2|	--*-	F-box protein interaction domain protein [Medicago truncatula]		
Niben101Scf06883g00002.1	sp|Q9ZW30|GSTU1_ARATH	*-*-	Glutathione S-transferase U1	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf02428g01020.1	sp|Q9LYT1|PAO3_ARATH	***-	Polyamine oxidase 3	IPR001613 (Flavin amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04861g00024.1	ref|WP_008994622.1|	****	histidinol-phosphate phosphatase [Novosphingobium sp. Rr 2-17] gb|EIZ79701.1| inositol monophosphatase [Novosphingobium sp. Rr 2-17]	IPR000760 (Inositol monophosphatase)	GO:0004401 (histidinol-phosphatase activity), GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf01964g11012.1	AT5G26800.1	***-	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion;	IPR019083 (IGR protein motif)	
Niben101Scf06290g02003.1	sp|Q8DHG3|SYW_THEEB	****	Tryptophan--tRNA ligase	IPR002305 (Aminoacyl-tRNA synthetase, class Ic)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004830 (tryptophan-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006436 (tryptophanyl-tRNA aminoacylation)
Niben101Scf00594g05010.1	sp|Q8L4B2|NFYC9_ARATH	*-**	Nuclear transcription factor Y subunit C-9	IPR009072 (Histone-fold), IPR027170 (Transcriptional activator NFYC/HAP5 subunit)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005622 (intracellular), GO:0006355 (regulation of transcription, DNA-templated), GO:0016602 (CCAAT-binding factor complex), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf03871g06001.1	ref|XP_002511556.1|	--**	enzyme inhibitor, putative [Ricinus communis] gb|EEF52158.1| enzyme inhibitor, putative [Ricinus communis]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf04223g01035.1	sp|Q8L883|LAX5_MEDTR	***-	Auxin transporter-like protein 5	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf04028g03014.1	sp|Q9SYT0|ANXD1_ARATH	*-*-	Annexin D1	IPR018502 (Annexin repeat)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf12515g00028.1	gb|AAG31013.1|	*-*-	tospovirus resistance protein A [Solanum lycopersicum]		
Niben101Scf07638g02003.1	ref|XP_003610469.1|	*-*-	Lysine-specific demethylase 3A-B [Medicago truncatula] gb|AES92666.1| transcription factor jumonji (JmjC) domain protein [Medicago truncatula]	IPR003347 (JmjC domain)	
Niben101Scf10287g01017.1	sp|Q9LVE0|PTR33_ARATH	***-	Protein NRT1/ PTR FAMILY 6.4	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf06753g00009.1	sp|Q66DQ2|APT_YERPS	****	Adenine phosphoribosyltransferase	IPR005764 (Adenine phosphoribosyl transferase), IPR029057 (Phosphoribosyltransferase-like)	GO:0003999 (adenine phosphoribosyltransferase activity), GO:0005737 (cytoplasm), GO:0006168 (adenine salvage), GO:0009116 (nucleoside metabolic process)
Niben101Scf00895g00019.1	ref|NP_001118630.1|	*-*-	high chlorophyll fluorescence 243 [Arabidopsis thaliana] gb|AEE75618.1| high chlorophyll fluorescence 243 [Arabidopsis thaliana]		
Niben101Scf03238g00017.1	sp|Q9ZQE5|PP153_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf03541g00021.1	sp|Q10QH3|CSPLL_ORYSJ	***-	CASP-like protein	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf26748g00003.1			Unknown protein		
Niben101Scf00859g02007.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf00509g03004.1	sp|Q0RNV0|PDXT_FRAAA	****	Glutamine amidotransferase subunit PdxT	IPR002161 (PdxT/SNO family), IPR029062 (Class I glutamine amidotransferase-like)	GO:0006543 (glutamine catabolic process), GO:0016740 (transferase activity), GO:0042823 (pyridoxal phosphate biosynthetic process)
Niben101Scf15536g02006.1	sp|Q5R581|KLC1_PONAB	*-*-	Kinesin light chain 1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02210g11010.1	sp|Q9FLJ4|PP440_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00797g01001.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06590g02002.1	sp|Q9SIB4|WOX3_ARATH	*-*-	WUSCHEL-related homeobox 3	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf00568g04065.1	sp|Q31KS4|ATPB_SYNE7	*-**	ATP synthase subunit beta	IPR005722 (ATPase, F1 complex, beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015986 (ATP synthesis coupled proton transport), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Scf03059g00008.1	AT3G21790.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=495	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01274g00006.1			Unknown protein		
Niben101Scf08564g03007.1	sp|A1CHL0|MOCOS_ASPCL	****	Molybdenum cofactor sulfurase	IPR005302 (Molybdenum cofactor sulfurase, C-terminal), IPR005303 (MOSC, N-terminal beta barrel), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030151 (molybdenum ion binding), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf08874g01012.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00482g06004.1	AT4G23490.1	***-	Protein of unknown function (DUF604) LENGTH=526	IPR006740 (Protein of unknown function DUF604)	
Niben101Ctg16037g00001.1	AT4G39180.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=554	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf02395g01007.1	ref|XP_002869709.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH45968.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf02613g06012.1	AT3G14270.1	****	phosphatidylinositol-4-phosphate 5-kinase family protein LENGTH=1791	IPR002423 (Chaperonin Cpn60/TCP-1), IPR002498 (Phosphatidylinositol-4-phosphate 5-kinase, core), IPR027409 (GroEL-like apical domain), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0044267 (cellular protein metabolic process), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf04237g00020.1	emb|CDX88502.1|	***-	BnaC06g39460D [Brassica napus]		
Niben101Scf00270g13017.1	sp|Q9SA38|OCT3_ARATH	****	Organic cation/carnitine transporter 3	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf08000g01002.1	AT4G35690.1	*-*-	Arabidopsis protein of unknown function (DUF241) LENGTH=284	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf00811g07002.1			Unknown protein	IPR018289 (MULE transposase domain)	
Niben101Scf07451g00013.1	AT1G18210.1	****	Calcium-binding EF-hand family protein LENGTH=170	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf05392g01005.1	AT3G44750.1	*-*-	histone deacetylase 3 LENGTH=245	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf01051g03008.1	tpg|DAA58261.1|	****	TPA: 3-5 exonuclease/ nucleic acid binding protein [Zea mays]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf16937g00004.1	sp|Q9ZPV8|COAD_ARATH	***-	Phosphopantetheine adenylyltransferase	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process)
Niben101Scf06424g02029.1	AT1G73390.1	***-	Endosomal targeting BRO1-like domain-containing protein LENGTH=419	IPR004328 (BRO1 domain)	
Niben101Scf03135g00011.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein		
Niben101Scf00960g13006.1			Unknown protein		
Niben101Scf03194g01035.1	sp|Q9JJK2|LANC2_MOUSE	*-*-	LanC-like protein 2	IPR007822 (Lanthionine synthetase C-like)	
Niben101Scf07007g03011.1	sp|Q9JJK2|LANC2_MOUSE	***-	LanC-like protein 2	IPR007822 (Lanthionine synthetase C-like)	
Niben101Scf03273g03012.1	sp|Q9SF78|GDL29_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf08590g00005.1	sp|P54652|HSP72_HUMAN	***-	Heat shock-related 70 kDa protein 2	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf03834g03012.1	ref|XP_003595157.1|	--**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf09811g00006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00568g04016.1	sp|P17344|ATPI_MAIZE	*-**	ATP synthase subunit a, chloroplastic	IPR000568 (ATPase, F0 complex, subunit A), IPR001865 (Ribosomal protein S2), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf16019g00005.1	sp|P16924|P4HA1_CHICK	*-*-	Prolyl 4-hydroxylase subunit alpha-1	IPR003582 (ShKT domain), IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00883g10001.1	gb|KFB84379.1|	***-	multidrug MFS transporter [Calothrix sp. 336/3]	IPR010099 (Epimerase family protein SDR39U1)	
Niben101Scf09565g01014.1	gb|AAP54617.2|	*-*-	retrotransp OsJ_32156 [Oryza sativa Japonica Group]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf01292g01009.1	sp|Q9SY02|PP301_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00369g02012.1			Unknown protein		
Niben101Scf12428g00003.1	AT5G45690.1	***-	Protein of unknown function (DUF1264) LENGTH=247	IPR010686 (Protein of unknown function DUF1264)	
Niben101Scf03628g00015.1	sp|Q3SWX0|NIPA2_BOVIN	****	Magnesium transporter NIPA2	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf12017g01005.1	gb|KEH31381.1|	--*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf01375g05001.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00369g04021.1	sp|Q9ZW24|GSTU7_ARATH	***-	Glutathione S-transferase U7	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf09223g00003.1	gb|KEH35506.1|	***-	alpha/beta fold hydrolase [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00606g00011.1	sp|C7G304|GOLS2_SOLLC	***-	Galactinol synthase 2	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf02665g11010.1	ref|XP_007031328.1|	***-	PR domain zinc finger protein 8, putative isoform 2, partial [Theobroma cacao] ref|XP_007031330.1| PR domain zinc finger protein 8, putative isoform 2, partial [Theobroma cacao] gb|EOY02254.1| PR domain zinc finger protein 8, putative isoform 2, partial [Theobroma cacao] gb|EOY02256.1| PR domain zinc finger protein 8, putative isoform 2, partial [Theobroma cacao]		
Niben101Scf03422g01002.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf04731g09009.1	AT5G09840.1	***-	Putative endonuclease or glycosyl hydrolase LENGTH=924	IPR024768 (Meiosis arrest female protein 1), IPR025605 (OST-HTH/LOTUS domain), IPR029060 (PIN domain-like)	GO:0005777 (peroxisome), GO:0010468 (regulation of gene expression)
Niben101Scf01493g02006.1	sp|Q6CC39|PUS1_YARLI	****	tRNA pseudouridine synthase 1	IPR001406 (Pseudouridine synthase I, TruA), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf04765g01004.1	sp|Q6H5U3|DES1L_ORYSJ	***-	Sphingolipid delta(4)-desaturase DES1-like	IPR005804 (Fatty acid desaturase, type 1)	GO:0006629 (lipid metabolic process)
Niben101Scf09401g02003.1	AT3G12120.1	***-	fatty acid desaturase 2 LENGTH=383	IPR005804 (Fatty acid desaturase, type 1), IPR021863 (Protein of unknown function DUF3474)	GO:0006629 (lipid metabolic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0055114 (oxidation-reduction process)
Niben101Scf02653g01003.1	sp|P49598|P2C37_ARATH	****	Protein phosphatase 2C 37	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf00414g06009.1	AT5G24270.1	*-**	Calcium-binding EF-hand family protein LENGTH=222	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf08211g01010.1			Unknown protein		
Niben101Scf04418g09010.1	sp|Q68FK8|DHX9_XENLA	****	ATP-dependent RNA helicase A-like protein	IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004386 (helicase activity)
Niben101Scf03600g00006.1	sp|Q41001|BCP_PEA	***-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf00085g00008.1	gb|AHG97393.1|	****	C-repeat-binding transcription factor 3 [Vitis vinifera]	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01049g00002.1	sp|Q9SYZ7|U496A_ARATH	***-	UPF0496 protein	IPR007749 (Protein of unknown function DUF677)	
Niben101Scf03193g01001.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02668g02006.1	AT4G31560.1	***-	high chlorophyll fluorescence 153 LENGTH=137		
Niben101Scf05584g04021.1	sp|P29060|CHIA_TOBAC	*-*-	Acidic endochitinase	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04686g00008.1	sp|Q9UUC8|RM51_SCHPO	***-	54S ribosomal protein L51, mitochondrial	IPR007741 (Ribosomal protein/NADH dehydrogenase domain), IPR012336 (Thioredoxin-like fold)	
Niben101Scf09454g00008.1	sp|P48000|KNAT3_ARATH	*-*-	Homeobox protein knotted-1-like 3	IPR005540 (KNOX1), IPR005541 (KNOX2), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04113g06008.1	sp|C3KTL7|DAPH_CLOB6	*-*-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	IPR011004 (Trimeric LpxA-like)	
Niben101Scf02655g00002.1	sp|O34392|YTRE_BACSU	*-**	ABC transporter ATP-binding protein YtrE	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00398g02004.1			Unknown protein		
Niben101Scf09937g00012.1	sp|A8GKU9|GLGX_SERP5	*-*-	Glycogen debranching enzyme	IPR015902 (Glycoside hydrolase, family 13), IPR017853 (Glycoside hydrolase superfamily)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08121g02002.1	sp|Q4R4T9|RANB3_MACFA	*-**	Ran-binding protein 3	IPR011993 (Pleckstrin homology-like domain), IPR015007 (Nuclear pore complex, NUP2/50/61)	GO:0005643 (nuclear pore), GO:0046907 (intracellular transport)
Niben101Scf01346g01006.1	sp|Q39017|DGK1_ARATH	****	Diacylglycerol kinase 1	IPR000756 (Diacylglycerol kinase, accessory domain), IPR001206 (Diacylglycerol kinase, catalytic domain), IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol-binding domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process), GO:0035556 (intracellular signal transduction)
Niben101Scf07841g01008.1	sp|Q8BKC5|IPO5_MOUSE	*-*-	Importin-5	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02332g00010.1	sp|Q8GYP6|PPR49_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf14010g01019.1	sp|Q52NJ2|RAB1A_PIG	***-	Ras-related protein Rab-1A	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf13150g04020.1	sp|P70705|ATP7A_RAT	*-*-	Copper-transporting ATPase 1	IPR001757 (P-type ATPase), IPR005150 (Cellulose synthase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf01255g00001.1	AT3G06120.1	***-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=202	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf15963g01011.1	gb|KEH40902.1|	*-*-	sister chromatid cohesion PDS5-like protein [Medicago truncatula]		
Niben101Scf02227g06024.1	sp|Q6ZPG2|WDR90_MOUSE	--*-	WD repeat-containing protein 90	IPR007148 (Small-subunit processome, Utp12), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02145g03009.1	AT1G62330.1	***-	O-fucosyltransferase family protein LENGTH=652	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf05269g02015.1	sp|Q8LFJ5|T112A_ARATH	***-	Multifunctional methyltransferase subunit TRM112-like protein	IPR005651 (Uncharacterised protein family UPF0434/Trm112)	
Niben101Scf12382g00008.1	sp|P27495|CB24_TOBAC	***-	Chlorophyll a-b binding protein 40, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf02461g06020.1			Unknown protein		
Niben101Scf01779g03011.1	sp|Q6C044|ATG18_YARLI	***-	Autophagy-related protein 18	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00457g10007.1	AT2G39210.1	***-	Major facilitator superfamily protein LENGTH=601	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf02056g02009.1	sp|O50064|FIMB2_ARATH	***-	Fimbrin-2	IPR001715 (Calponin homology domain)	GO:0005515 (protein binding)
Niben101Scf07428g02003.1	ref|XP_002512660.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF50112.1| conserved hypothetical protein [Ricinus communis]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf31228g00004.1			Unknown protein		
Niben101Scf22183g00002.1	ref|YP_009045802.1|	***-	orf101b (mitochondrion) [Batis maritima] gb|AIC83405.1| orf101b (mitochondrion) [Batis maritima]		
Niben101Scf08137g00009.1	sp|Q8TC12|RDH11_HUMAN	***-	Retinol dehydrogenase 11	IPR016040 (NAD(P)-binding domain)	
Niben101Scf02074g02062.1			Unknown protein		
Niben101Scf04941g03016.1	sp|Q9SH26|PP102_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06091g01026.1	sp|Q92564|DCNL4_HUMAN	***-	DCN1-like protein 4	IPR011992 (EF-hand domain pair), IPR014764 (Defective-in-cullin neddylation protein)	
Niben101Scf00127g03003.1			Unknown protein		
Niben101Scf04375g14006.1	AT5G53590.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=142	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf09711g00005.1	AT1G32170.1	****	xyloglucan endotransglucosylase/hydrolase 30 LENGTH=343	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01520g03009.1	AT2G35585.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=156		
Niben101Scf07793g02024.1	sp|Q9FML2|HDA6_ARATH	****	Histone deacetylase 6	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	GO:0004407 (histone deacetylase activity), GO:0016575 (histone deacetylation)
Niben101Scf02160g04001.1	AT3G55330.1	***-	PsbP-like protein 1 LENGTH=230	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf09729g00021.1	sp|Q9V535|RBM8A_DROME	--**	RNA-binding protein 8A	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04831g00010.1	AT5G42950.1	*-*-	GYF domain-containing protein LENGTH=1714	IPR003169 (GYF)	GO:0005515 (protein binding)
Niben101Scf17339g00005.1			Unknown protein		
Niben101Scf00589g00001.1	gb|KEH22373.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf04424g04005.1	ref|XP_007023712.1|	***-	To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao] gb|EOY26334.1| To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao]		
Niben101Scf00466g03022.1	sp|Q43075|SPE1_PEA	****	Arginine decarboxylase	IPR000183 (Ornithine/DAP/Arg decarboxylase), IPR029066 (PLP-binding barrel)	GO:0003824 (catalytic activity), GO:0006527 (arginine catabolic process), GO:0008295 (spermidine biosynthetic process), GO:0008792 (arginine decarboxylase activity)
Niben101Scf12154g01013.1	sp|Q9Y580|RBM7_HUMAN	--**	RNA-binding protein 7	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR025715 (Friend of PRMT1 duplication)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02805g07003.1			Unknown protein		
Niben101Ctg08518g00003.1	sp|Q96556|SPD1_DATST	*-*-	Spermidine synthase 1	IPR001045 (Spermidine/spermine synthases family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003824 (catalytic activity)
Niben101Scf21083g00007.1	gb|AES88819.2|	*-*-	DNA-binding protein, putative [Medicago truncatula]		
Niben101Scf17923g00001.1	sp|Q9XPP8|MATK_TRIUN	*-*-	Maturase K	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf10412g00008.1	AT4G34370.1	***-	RING/U-box superfamily protein LENGTH=597	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02537g03005.1	sp|Q9WTQ1|KPCD1_RAT	*-**	Serine/threonine-protein kinase D1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01858g01033.1	emb|CDY24374.1|	***-	BnaA07g02990D [Brassica napus]		
Niben101Scf01487g04011.1	sp|Q51876|LEP_PHOLA	*-**	Signal peptidase I	IPR000223 (Peptidase S26A, signal peptidase I), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf01852g04026.1	sp|Q9SIT7|PP151_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05417g01007.1	sp|O23970|GPX1_HELAN	*-**	Glutathione peroxidase 1	IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029759 (Glutathione peroxidase active site)	GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process)
Niben101Scf06078g03001.1	sp|Q8BGK6|YLAT2_MOUSE	****	Y+L amino acid transporter 2	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf03722g01002.1	gb|AAD25575.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf06945g00012.1	AT3G18430.1	****	Calcium-binding EF-hand family protein LENGTH=175	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01468g00006.1	sp|Q6Q1P4|SMC1_ARATH	***-	Structural maintenance of chromosomes protein 1	IPR003395 (RecF/RecN/SMC, N-terminal), IPR010935 (SMCs flexible hinge), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028468 (Structural maintenance of chromosomes protein 1)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0007064 (mitotic sister chromatid cohesion), GO:0008278 (cohesin complex), GO:0046982 (protein heterodimerization activity), GO:0051276 (chromosome organization)
Niben101Scf03437g02036.1	emb|CDY35069.1|	***-	BnaA06g10790D [Brassica napus]		
Niben101Scf08142g03006.1	sp|P0CT45|IPI1_CHATD	--*-	Pre-rRNA-processing protein IPI1		
Niben101Scf08664g00026.1	AT3G15980.5	*-*-	Coatomer, beta' subunit LENGTH=930	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf03039g01017.1	sp|A3CK48|VATA_STRSV	****	V-type ATP synthase alpha chain	IPR005725 (ATPase, V1 complex, subunit A), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0015992 (proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0033180 (proton-transporting V-type ATPase, V1 domain), GO:0046034 (ATP metabolic process), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf06059g02005.1	AT2G03390.1	***-	uvrB/uvrC motif-containing protein LENGTH=330	IPR001943 (UVR domain), IPR011722 (Hemimethylated DNA-binding domain)	GO:0003677 (DNA binding), GO:0005515 (protein binding)
Niben101Scf01005g07009.1	ref|XP_003614078.1|	*-*-	HGWP repeat containing protein-like protein [Medicago truncatula]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf06525g03011.1	AT5G20350.1	*-**	Ankyrin repeat family protein with DHHC zinc finger domain LENGTH=620	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf00614g00025.1	sp|Q03164|KMT2A_HUMAN	*-**	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR003105 (SRA-YDG), IPR007728 (Pre-SET domain), IPR015947 (PUA-like domain), IPR025794 (Histone H3-K9 methyltransferase, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016571 (histone methylation), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0042393 (histone binding)
Niben101Scf04420g03001.1	emb|CDY61233.1|	--*-	BnaC07g47960D [Brassica napus]		
Niben101Scf00640g00013.1	AT1G78810.1	*-*-	unknown protein; Has 75 Blast hits to 52 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). LENGTH=481		
Niben101Scf06344g05008.1	AT5G16350.1	***-	O-acyltransferase (WSD1-like) family protein LENGTH=488		
Niben101Scf08729g01010.1	AT5G25570.3	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages. LENGTH=131		
Niben101Scf15792g00008.1	AT4G10465.1	***-	Heavy metal transport/detoxification superfamily protein LENGTH=183		
Niben101Scf02625g06020.1			Unknown protein		
Niben101Scf00111g01019.1	sp|Q9LEX0|P2A13_ARATH	***-	F-box protein PP2-A13	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf11341g00009.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00047g03028.1	AT1G10800.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=118		
Niben101Scf10920g01009.1	AT3G58460.2	***-	RHOMBOID-like protein 15 LENGTH=426	IPR009060 (UBA-like), IPR022764 (Peptidase S54, rhomboid domain)	GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0016021 (integral component of membrane)
Niben101Scf01174g00017.1			Unknown protein		
Niben101Scf04021g05008.1	sp|Q54UK0|PLDA_DICDI	*-*-	Phospholipase D A	IPR000008 (C2 domain), IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0005515 (protein binding), GO:0008152 (metabolic process)
Niben101Scf07739g00007.1	sp|P93194|RPK1_IPONI	--*-	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01466g01031.1			Unknown protein		
Niben101Scf01574g00002.1	AT5G42650.1	***-	allene oxide synthase LENGTH=518	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf14922g00029.1	sp|Q08853|ATC_PLAFK	*-*-	Calcium-transporting ATPase	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf04614g09005.1	sp|O23262|RLF32_ARATH	***-	Protein RALF-like 32	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf20010g00018.1			Unknown protein		
Niben101Scf00207g05008.1	sp|Q9FPT1|UBP12_ARATH	***-	Ubiquitin carboxyl-terminal hydrolase 12	IPR024729 (ICP0-binding domain of Ubiquitin-specific protease 7), IPR029346 (Ubiquitin carboxyl-terminal hydrolase, C-terminal)	
Niben101Scf02653g05015.1	sp|P53569|CEBPZ_MOUSE	*-*-	CCAAT/enhancer-binding protein zeta		
Niben101Scf06482g05004.1	sp|P81392|MYB06_ANTMA	*-*-	Myb-related protein 306	IPR009057 (Homeodomain-like), IPR018800 (Proline-rich protein PRCC)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01556g02002.1	AT3G02800.1	*-**	Tyrosine phosphatase family protein LENGTH=203	IPR004861 (Protein-tyrosine phosphatase, SIW14-like), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity)
Niben101Scf03421g04001.1	sp|Q93VJ4|BEE2_ARATH	--*-	Transcription factor BEE 2		
Niben101Scf01143g00002.1	AT5G15740.1	***-	O-fucosyltransferase family protein LENGTH=508	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf16939g00007.1	emb|CDX68206.1|	***-	BnaA07g22460D [Brassica napus]		
Niben101Scf00380g04001.1	AT5G49350.1	*-*-	Glycine-rich protein family LENGTH=302		
Niben101Scf04623g02007.1	sp|Q0UBQ5|NOP16_PHANO	--*-	Nucleolar protein 16	IPR019002 (Ribosome biogenesis protein Nop16)	
Niben101Scf10938g00009.1	sp|Q9ZUH5|SDR2B_ARATH	****	Short-chain dehydrogenase/reductase 2b	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf06840g00010.1	sp|A9LYE0|RK22_ACOAM	*-**	50S ribosomal protein L22, chloroplastic	IPR001063 (Ribosomal protein L22/L17), IPR001351 (Ribosomal protein S3, C-terminal), IPR009019 (K homology domain, prokaryotic type), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf01124g17005.1	sp|Q3SWX8|RBBP7_BOVIN	*-**	Histone-binding protein RBBP7	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00607g03016.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf02724g04006.1	sp|Q9M836|LSH2_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2	IPR006936 (ALOG domain)	
Niben101Scf05551g01006.1	sp|Q8L5Y9|PANK2_ARATH	****	Pantothenate kinase 2	IPR004567 (Type II pantothenate kinase)	GO:0004594 (pantothenate kinase activity), GO:0005524 (ATP binding), GO:0015937 (coenzyme A biosynthetic process)
Niben101Scf04500g03002.1	AT2G21960.1	***-	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=332		
Niben101Scf10650g01008.1	sp|Q54J88|MMS19_DICDI	*-*-	MMS19 nucleotide excision repair protein homolog	IPR016024 (Armadillo-type fold), IPR024687 (MMS19, C-terminal)	GO:0005488 (binding)
Niben101Scf00128g05005.1	emb|CDY45142.1|	*-*-	BnaA09g14500D [Brassica napus]	IPR007679 (Protein of unknown function DUF569), IPR008999 (Actin cross-linking)	
Niben101Scf01683g17031.1	ref|NP_001050533.1|	*-*-	product [Oryza sativa Japonica Group]	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf07241g00018.1	AT2G22590.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=470	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04411g02013.1	sp|Q9QYT7|PIGQ_MOUSE	*-**	Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q	IPR007720 (N-acetylglucosaminyl transferase component)	GO:0006506 (GPI anchor biosynthetic process), GO:0016021 (integral component of membrane), GO:0017176 (phosphatidylinositol N-acetylglucosaminyltransferase activity)
Niben101Scf02594g05001.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05697g10010.1	AT3G47830.1	*-**	DNA glycosylase superfamily protein LENGTH=293	IPR011257 (DNA glycosylase), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal), IPR028924 (Permuted single zf-CXXC unit), IPR028925 (Demeter, RRM-fold domain)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair)
Niben101Scf04329g06014.1	ref|XP_002530327.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF32043.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03329g01002.1	sp|Q39445|TBB_CICAR	*-*-	Tubulin beta chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf03422g01014.1	sp|Q9ZSY8|IAA27_ARATH	***-	Auxin-responsive protein IAA27	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf06397g00006.1	emb|CDY44340.1|	***-	BnaC02g03370D [Brassica napus]		
Niben101Scf22894g00006.1	sp|Q6YYA3|CRS1_ORYSJ	***-	Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf00307g04007.1	sp|Q39265|ZFP6_ARATH	***-	Zinc finger protein 6	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00602g00011.1	sp|Q40401|CALR_NICPL	*-*-	Calreticulin		
Niben101Scf08033g00009.1	AT3G18210.1	***-	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=394	IPR006620 (Prolyl 4-hydroxylase, alpha subunit)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03731g01005.1	gb|ABF97305.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf07036g03003.1			Unknown protein		
Niben101Scf05566g02008.1	AT1G53350.1	***-	Disease resistance protein (CC-NBS-LRR class) family LENGTH=927	IPR002182 (NB-ARC), IPR003591 (Leucine-rich repeat, typical subtype), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf04707g00001.1	sp|Q92616|GCN1L_HUMAN	***-	Translational activator GCN1	IPR016024 (Armadillo-type fold), IPR024395 (CLASP N-terminal domain), IPR026827 (Proteasome component ECM29/Translational activator GCN1)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf05234g01004.1	AT3G45670.1	***-	Protein kinase superfamily protein LENGTH=379	IPR011009 (Protein kinase-like domain)	
Niben101Scf27226g00001.1	AT4G31540.1	****	exocyst subunit exo70 family protein G1 LENGTH=687	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf14776g00007.1	AT1G68140.1	***-	Protein of unknown function (DUF1644) LENGTH=334	IPR012866 (Protein of unknown function DUF1644), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf00537g02021.1	emb|CDY68652.1|	***-	BnaCnng59930D [Brassica napus]		
Niben101Scf10512g00001.1	sp|Q38827|IAA9_ARATH	***-	Auxin-responsive protein IAA9	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf21408g00004.1	ref|NP_001045022.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf00478g01001.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf00878g01002.1	sp|Q945B4|AOP3L_ARATH	*-**	2-oxoglutarate-dependent dioxygenase AOP3	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02513g05012.1	AT3G17840.1	*-**	receptor-like kinase 902 LENGTH=647	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00069g11015.1	sp|Q5A4W8|BDF1_CANAL	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf01670g05002.1	sp|Q9SZL8|FRS5_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 5	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf01848g04006.1	ref|XP_003589558.1|	--*-	RING finger protein [Medicago truncatula]		
Niben101Scf02606g05023.1	sp|Q58548|RPOM_METJA	****	DNA-directed RNA polymerase subunit M	IPR001222 (Zinc finger, TFIIS-type), IPR001529 (DNA-directed RNA polymerase, M/15kDa subunit), IPR012164 (DNA-directed RNA polymerase, subunit C11/M/9)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf01063g08018.1	ref|XP_002520429.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF41842.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04234g02011.1	AT2G26640.1	***-	3-ketoacyl-CoA synthase 11 LENGTH=509	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0016746 (transferase activity, transferring acyl groups), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Ctg14873g00001.1	sp|P42785|PCP_HUMAN	*-**	Lysosomal Pro-X carboxypeptidase	IPR008758 (Peptidase S28), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf16888g00007.1	sp|Q9LT23|BH121_ARATH	***-	Transcription factor bHLH121	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf06042g03022.1	sp|Q9SY33|PER7_ARATH	*-**	Peroxidase 7	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10881g00027.1	sp|Q83E09|RS1_COXBU	--*-	30S ribosomal protein S1		
Niben101Scf00854g03010.1	gb|AFI44275.1|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Silene vulgaris]		
Niben101Scf06032g00006.1	sp|Q2IIW6|LIPA_ANADE	****	Lipoyl synthase	IPR003698 (Lipoyl synthase), IPR007197 (Radical SAM)	GO:0003824 (catalytic activity), GO:0009107 (lipoate biosynthetic process), GO:0016992 (lipoate synthase activity), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf08106g00006.1	sp|Q9FZ70|FDL1_ARATH	*-*-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf04276g00004.1	ref|XP_007027043.1|	*-*-	Agenet domain-containing protein, putative [Theobroma cacao] gb|EOY07545.1| Agenet domain-containing protein, putative [Theobroma cacao]	IPR008395 (Agenet-like domain)	
Niben101Scf02840g04009.1	ref|XP_002531850.1|	****	calcium ion binding protein, putative [Ricinus communis] gb|EEF30528.1| calcium ion binding protein, putative [Ricinus communis]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02983g01003.1	sp|Q9FFI5|NAC86_ARATH	*-*-	NAC domain-containing protein 86	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06751g00004.1	ref|XP_003608998.1|	*-*-	F-box protein [Medicago truncatula]	IPR017451 (F-box associated interaction domain)	
Niben101Scf00614g00024.1	sp|Q5ZJF4|PRDX6_CHICK	*-*-	Peroxiredoxin-6	IPR012336 (Thioredoxin-like fold)	GO:0016209 (antioxidant activity), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06091g07012.1	gb|AAW30276.1|	*-*-	cytochrome c biogenesis ccmF [Liriodendron tulipifera]		
Niben101Scf03739g06013.1	ref|XP_007011369.1|	***-	Rhodanese/Cell cycle control ph isoform 1 [Theobroma cacao]	IPR020936 (Uncharacterised protein family UPF0176)	
Niben101Scf06928g01007.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02340g03001.1	sp|O04209|CLC2_ARATH	*-**	Clathrin light chain 2	IPR000996 (Clathrin light chain)	GO:0005198 (structural molecule activity), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030130 (clathrin coat of trans-Golgi network vesicle), GO:0030132 (clathrin coat of coated pit)
Niben101Scf04654g01009.1	sp|P46903|NATA_BACSU	*-**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf17922g00004.1	AT5G46150.2	***-	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein LENGTH=343	IPR005045 (CDC50/LEM3 family)	GO:0016020 (membrane)
Niben101Scf06525g03012.1	sp|Q1LZC5|ANR54_BOVIN	*-*-	Ankyrin repeat domain-containing protein 54	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf01189g04024.1	emb|CDX89594.1|	*-*-	BnaC04g36130D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf06094g05004.1	gb|KEH22373.1|	--*-	DUF4283 domain protein [Medicago truncatula]		
Niben101Scf01037g04008.1	sp|Q9LV97|CLE21_ARATH	--*-	CLAVATA3/ESR (CLE)-related protein 21		
Niben101Scf03189g01012.1	sp|Q9C7A2|Y3236_ARATH	*-*-	Ankyrin repeat-containing protein	IPR017907 (Zinc finger, RING-type, conserved site), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf04145g00013.1	sp|Q8TD26|CHD6_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 6	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf00024g03002.1	AT1G74770.1	*-*-	zinc ion binding LENGTH=1259		
Niben101Scf02636g01005.1			Unknown protein		
Niben101Scf06848g08015.1	sp|P00070|CYC_HELAN	***-	Cytochrome c	IPR002327 (Cytochrome c, class IA/ IB), IPR009056 (Cytochrome c-like domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf05047g03010.1	AT5G52430.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=438		
Niben101Scf01487g04010.1	gb|AGV54177.1|	***-	signal peptidase I [Phaseolus vulgaris]		
Niben101Scf01609g00014.1			Unknown protein		
Niben101Scf16551g00006.1	AT2G17080.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=263	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf04044g22008.1	ref|XP_007024096.1|	***-	Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 2 [Theobroma cacao] gb|EOY26718.1| Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 2 [Theobroma cacao]	IPR007650 (Zf-FLZ domain)	
Niben101Scf01911g02002.1			Unknown protein		
Niben101Scf02910g01009.1	sp|Q60720|CY561_MOUSE	***-	Cytochrome b561	IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf05245g02005.1	AT3G26040.1	*-**	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04955g07019.1	sp|Q979Z1|SYY_THEVO	--**	Tyrosine--tRNA ligase	IPR002305 (Aminoacyl-tRNA synthetase, class Ic)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation)
Niben101Scf00466g02020.1	ref|XP_002524703.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF37722.1| conserved hypothetical protein [Ricinus communis]	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf36162g00002.1	emb|CDY25189.1|	*-*-	BnaC06g04140D [Brassica napus]	IPR027951 (Domain of unknown function DUF4477)	
Niben101Scf07793g02023.1	sp|Q92769|HDAC2_HUMAN	*-**	Histone deacetylase 2	IPR000286 (Histone deacetylase superfamily), IPR002885 (Pentatricopeptide repeat), IPR023801 (Histone deacetylase domain)	GO:0004407 (histone deacetylase activity), GO:0016575 (histone deacetylation)
Niben101Scf19423g00012.1	sp|P13280|GLYG_RABIT	*-*-	Glycogenin-1	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf10818g00015.1	emb|CDX90423.1|	--*-	BnaA03g43580D [Brassica napus]		
Niben101Scf03468g02013.1	ref|NP_195332.2|	***-	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gb|AEE86615.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana]	IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	
Niben101Scf04676g01025.1	AT3G56330.1	*-**	N2,N2-dimethylguanosine tRNA methyltransferase LENGTH=433	IPR002905 (tRNA methyltransferase, Trm1), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0004809 (tRNA (guanine-N2-)-methyltransferase activity), GO:0008033 (tRNA processing)
Niben101Scf08669g00004.1	ref|XP_003603221.1|	*-*-	MTD1 [Medicago truncatula]		
Niben101Scf02021g02009.1	AT5G19330.1	***-	ARM repeat protein interacting with ABF2 LENGTH=710	IPR011333 (BTB/POZ fold), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf01006g02005.1	sp|Q9ZPY9|P4KG4_ARATH	*-*-	Phosphatidylinositol 4-kinase gamma 4	IPR000403 (Phosphatidylinositol 3-/4-kinase, catalytic domain)	GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf08341g03011.1	sp|Q93YV6|2A5I_ARATH	****	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf10036g00001.1	sp|Q01233|HSP70_NEUCR	*-*-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf01745g04006.1	sp|Q944A9|NPS11_ARATH	***-	Novel plant SNARE 11	IPR000727 (Target SNARE coiled-coil domain), IPR005606 (Sec20)	GO:0005515 (protein binding)
Niben101Scf06091g01025.1	AT1G80700.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=214		
Niben101Scf13540g02001.1			Unknown protein		
Niben101Scf05700g00003.1	sp|Q54IV7|RFT1_DICDI	*-*-	Protein RFT1 homolog	IPR007594 (RFT1)	GO:0005319 (lipid transporter activity), GO:0006869 (lipid transport), GO:0016021 (integral component of membrane)
Niben101Scf05917g01016.1	sp|O22132|LBD19_ARATH	***-	LOB domain-containing protein 19	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf04194g00021.1	AT5G64420.1	****	DNA polymerase V family LENGTH=1306	IPR007015 (DNA polymerase V), IPR016024 (Armadillo-type fold)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0005488 (binding), GO:0006351 (transcription, DNA-templated)
Niben101Scf03624g07019.1	AT1G09890.1	***-	Rhamnogalacturonate lyase family protein LENGTH=617	IPR008979 (Galactose-binding domain-like), IPR010325 (Rhamnogalacturonate lyase), IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0030246 (carbohydrate binding)
Niben101Scf03403g03035.1	ref|NP_201350.2|	*-*-	O-fuc [Arabidopsis thaliana]	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf04216g02006.1	ref|WP_002796693.1|	****	Phot [Microcystis aeruginosa PCC 9809]	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf05133g02004.1	AT4G03410.2	****	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein LENGTH=361	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf02832g01015.1	ref|XP_010107860.1|	****	Ph phosphatase PTEN [Morus notabilis]	IPR000008 (C2 domain), IPR016130 (Protein-tyrosine phosphatase, active site), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0005515 (protein binding), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Ctg15498g00001.1	sp|Q8RXD6|BRE1A_ARATH	*-*-	E3 ubiquitin-protein ligase BRE1-like 1		
Niben101Scf00918g00001.1	AT5G14760.1	****	L-aspartate oxidase LENGTH=651	IPR005288 (L-aspartate oxidase), IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR015939 (Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal), IPR027477 (Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain)	GO:0005737 (cytoplasm), GO:0008734 (L-aspartate oxidase activity), GO:0009435 (NAD biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03213g02008.1	AT5G43170.1	*-*-	zinc-finger protein 3 LENGTH=193	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	
Niben101Scf00909g01004.1			Unknown protein		
Niben101Scf01237g03001.1	sp|Q54ND5|MINP1_DICDI	*-**	Multiple inositol polyphosphate phosphatase 1	IPR029033 (Histidine phosphatase superfamily)	GO:0003993 (acid phosphatase activity)
Niben101Scf15671g01009.1	AT3G07790.1	***-	DGCR14-related LENGTH=508	IPR019148 (Nuclear protein DGCR14)	
Niben101Scf01834g04006.1	AT5G04820.1	***-	ovate family protein 13 LENGTH=260	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf09716g01003.1	sp|O64477|Y2913_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR000858 (S-locus glycoprotein)	GO:0048544 (recognition of pollen)
Niben101Scf01903g02003.1	sp|P10243|MYBA_HUMAN	*-*-	Myb-related protein A	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf09937g00013.1	sp|C4ZVY1|GLGX_ECOBW	*-*-	Glycogen debranching enzyme	IPR013783 (Immunoglobulin-like fold), IPR014756 (Immunoglobulin E-set), IPR015902 (Glycoside hydrolase, family 13), IPR017853 (Glycoside hydrolase superfamily)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0043169 (cation binding)
Niben101Scf13411g00012.1	sp|Q9LYT1|PAO3_ARATH	***-	Polyamine oxidase 3	IPR001613 (Flavin amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01267g10005.1	sp|F4K4L7|TAF4B_ARATH	*-**	Transcription initiation factor TFIID subunit 4b	IPR007900 (Transcription initiation factor TFIID component TAF4), IPR009072 (Histone-fold)	GO:0005669 (transcription factor TFIID complex), GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity)
Niben101Scf04727g02003.1	gb|ADR70862.1|	*-*-	mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]	IPR012336 (Thioredoxin-like fold), IPR019716 (Ribosomal protein L53, mitochondrial)	
Niben101Scf03390g14022.1	gb|ABK51384.1|	--*-	IMP dehydrogenase/GMP reductase [Hevea brasiliensis]		
Niben101Scf09025g02012.1	sp|Q6QDC9|TBB_MYCGR	****	Tubulin beta chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0000930 (gamma-tubulin complex), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0007020 (microtubule nucleation), GO:0031122 (cytoplasmic microtubule organization), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Ctg13736g00004.1	sp|P23432|E13C_TOBAC	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02041g04015.1	sp|P45739|CATA_HELAN	****	Catalase	IPR002226 (Catalase haem-binding site), IPR010582 (Catalase immune-responsive domain), IPR011614 (Catalase core domain), IPR018028 (Catalase, mono-functional, haem-containing), IPR020835 (Catalase-like domain), IPR024708 (Catalase active site)	GO:0004096 (catalase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01521g08010.1	AT1G27070.1	***-	5'-AMP-activated protein kinase-related LENGTH=532	IPR013783 (Immunoglobulin-like fold), IPR014756 (Immunoglobulin E-set)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf15227g00030.1	sp|Q2KIN1|DPM2_BOVIN	***-	Dolichol phosphate-mannose biosynthesis regulatory protein	IPR009914 (Dolichol phosphate-mannose biosynthesis regulatory)	GO:0009059 (macromolecule biosynthetic process), GO:0030176 (integral component of endoplasmic reticulum membrane)
Niben101Scf09788g00003.1	sp|P74227|EFTU_SYNY3	****	Elongation factor Tu	IPR004541 (Translation elongation factor EFTu/EF1A, bacterial/organelle), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006414 (translational elongation)
Niben101Ctg13241g00001.1			Unknown protein		
Niben101Scf01143g03005.1	sp|Q10CQ1|MAD14_ORYSJ	****	MADS-box transcription factor 14	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf01927g09005.1	sp|P49689|RS30_ARATH	***-	40S ribosomal protein S30	IPR006846 (Ribosomal protein S30)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01068g00007.1	AT4G18710.1	****	Protein kinase superfamily protein LENGTH=380	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01230g00013.1	sp|Q84JH9|TBL25_ARATH	***-	Protein trichome birefringence-like 25	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	GO:0005794 (Golgi apparatus), GO:0010411 (xyloglucan metabolic process), GO:0016413 (O-acetyltransferase activity)
Niben101Scf01272g01027.1	AT5G16960.1	*-**	Zinc-binding dehydrogenase family protein LENGTH=346	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR002347 (Glucose/ribitol dehydrogenase), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008152 (metabolic process), GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf11264g01030.1	sp|F4K5K4|TBL5_ARATH	***-	Protein trichome birefringence-like 5	IPR026057 (PC-Esterase)	
Niben101Scf12751g00015.1	gb|ABA99135.2|	***-	seed maturation protein PM23, putative, expressed [Oryza sativa Japonica Group]	IPR008479 (Protein of unknown function DUF760)	
Niben101Scf01727g03003.1	sp|Q9DF42|RB8AA_XENLA	--**	RNA-binding protein 8A-A	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00646g09007.1	sp|Q9M2C0|VITH4_ARATH	***-	Vacuolar iron transporter homolog 4	IPR008217 (Ccc1 family)	
Niben101Scf08516g01005.1	sp|Q94ID6|ERF81_ARATH	*-**	Ethylene-responsive transcription factor 12	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf37170g00003.1	AT1G54570.1	*-*-	Esterase/lipase/thioesterase family protein LENGTH=704	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03496g00023.1			Unknown protein		
Niben101Scf00337g04009.1	ref|NP_191672.1|	****	alpha-1,4-galacturon [Arabidopsis thaliana] emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gb|AHL38722.1| glycosyltransferase, partial [Arabidopsis thaliana]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf07036g02002.1			Unknown protein		
Niben101Scf06156g02006.1	sp|Q5R587|RPAB1_PONAB	*-**	DNA-directed RNA polymerases I, II, and III subunit RPABC1	IPR005571 (RNA polymerase, Rpb5, N-terminal)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf08240g01011.1	gb|AFZ39151.1|	*-*-	hemerythrin class glutathione S-transferase [Physcomitrella patens]		
Niben101Scf16338g00013.1			Unknown protein		
Niben101Scf04011g08004.1	ref|XP_005651523.1|	****	iron-sulfur cluster assembly protein [Coccomyxa subellipsoidea C-169] gb|EIE26979.1| iron-sulfur cluster assembly protein [Coccomyxa subellipsoidea C-169]	IPR001075 (NIF system FeS cluster assembly, NifU, C-terminal)	GO:0005506 (iron ion binding), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf09071g00024.1	ref|XP_003610227.1|	*-*-	Ycf68 [Medicago truncatula]		
Niben101Scf02976g02002.1	sp|Q9JJT0|RCL1_MOUSE	****	RNA 3'-terminal phosphate cyclase-like protein	IPR000228 (RNA 3'-terminal phosphate cyclase)	GO:0003824 (catalytic activity), GO:0005730 (nucleolus), GO:0006396 (RNA processing), GO:0042254 (ribosome biogenesis)
Niben101Scf00807g03027.1	AT4G31170.1	*-**	Protein kinase superfamily protein LENGTH=412	IPR002912 (ACT domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00837g12023.1	sp|Q9FHW9|GDL90_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf03842g05011.1	sp|Q9SD67|FTSH7_ARATH	*-**	ATP-dependent zinc metalloprotease FTSH 7, chloroplastic	IPR011546 (Peptidase M41, FtsH extracellular)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding), GO:0016021 (integral component of membrane)
Niben101Scf10041g00026.1	sp|Q54YW1|ELMOA_DICDI	--*-	ELMO domain-containing protein A	IPR006816 (Engulfment/cell motility, ELMO)	GO:0005856 (cytoskeleton), GO:0006909 (phagocytosis)
Niben101Scf00304g07023.1	sp|O49884|RL30_LUPLU	***-	60S ribosomal protein L30	IPR000231 (Ribosomal protein L30e), IPR022991 (Ribosomal protein L30e, conserved site), IPR029064 (50S ribosomal protein L30e-like)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02517g18010.1	ref|XP_002871154.1|	--**	metal ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH47413.1| metal ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf00944g07017.1	sp|B4RCH3|SUCC_PHEZH	***-	Succinyl-CoA ligase [ADP-forming] subunit beta	IPR005809 (Succinyl-CoA synthetase, beta subunit), IPR016102 (Succinyl-CoA synthetase-like)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0046872 (metal ion binding)
Niben101Scf03135g00012.1			Unknown protein		
Niben101Scf00270g13016.1	emb|CDX79315.1|	***-	BnaC06g19880D [Brassica napus]		
Niben101Scf01968g01006.1	sp|B5YIK7|ACCA_THEYD	*-**	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	IPR001095 (Acetyl-CoA carboxylase, alpha subunit), IPR011763 (Acetyl-coenzyme A carboxyltransferase, C-terminal), IPR029045 (ClpP/crotonase-like domain)	GO:0003989 (acetyl-CoA carboxylase activity), GO:0006633 (fatty acid biosynthetic process), GO:0009317 (acetyl-CoA carboxylase complex), GO:0016874 (ligase activity)
Niben101Scf00369g09013.1	sp|Q6IV77|TAZ_MACMU	***-	Tafazzin	IPR000872 (Tafazzin)	GO:0006644 (phospholipid metabolic process), GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf00781g03018.1	AT1G21920.1	*-*-	Histone H3 K4-specific methyltransferase SET7/9 family protein LENGTH=417	IPR003409 (MORN motif)	
Niben101Scf16812g00010.1	sp|Q8LF80|CKB21_ARATH	*-*-	Cyclin-dependent kinase B2-1	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03300g04003.1	AT3G19080.1	*-*-	SWIB complex BAF60b domain-containing protein LENGTH=462	IPR003121 (SWIB/MDM2 domain)	GO:0005515 (protein binding)
Niben101Scf16795g00007.1	sp|Q01992|MIPEP_RAT	*-**	Mitochondrial intermediate peptidase	IPR001567 (Peptidase M3A/M3B), IPR024077 (Neurolysin/Thimet oligopeptidase, domain 2)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00293g10002.1	ref|XP_002528851.1|	*-*-	serine-threonine protein kinase, plant-type, putative [Ricinus communis] gb|EEF33525.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Scf02004g00032.1	sp|Q9KUT3|MDH_VIBCH	****	Malate dehydrogenase	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf10287g01018.1	AT5G55850.2	*-*-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=130	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf01817g02008.1	AT2G46260.1	***-	BTB/POZ/Kelch-associated protein LENGTH=561	IPR008974 (TRAF-like), IPR011333 (BTB/POZ fold), IPR011705 (BTB/Kelch-associated)	GO:0005515 (protein binding)
Niben101Scf06435g03023.1	ref|NP_001053492.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf01150g02001.1	AT2G31290.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=415	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf04028g03013.1	sp|Q9C7A2|Y3236_ARATH	--*-	Ankyrin repeat-containing protein	IPR020683 (Ankyrin repeat-containing domain)	
Niben101Scf06628g00030.1			Unknown protein		
Niben101Scf00442g05006.1	sp|Q9FZ95|PUP3_ARATH	***-	Purine permease 3	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf00782g00006.1			Unknown protein		
Niben101Scf01827g02007.1	sp|Q5TGI4|SAMD5_HUMAN	--*-	Sterile alpha motif domain-containing protein 5	IPR001279 (Beta-lactamase-like), IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf03631g01014.1	sp|Q681N2|PUB15_ARATH	***-	U-box domain-containing protein 15	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf11937g00003.1	ref|WP_026104354.1|	*-*-	aldo/keto reductase [Anabaena sp. PCC 7108]	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf14799g00020.1	gb|ABR25403.1|	****	transferase (transferring glycosyl group) [Oryza sativa Indica Group]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf00279g06008.1	sp|Q8VYI9|NLTL5_ARATH	*-*-	Non-specific lipid-transfer protein-like protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02296g00006.1	sp|Q8L9W3|ATL23_ARATH	*-*-	E3 ubiquitin-protein ligase ATL23		
Niben101Scf16244g02033.1	sp|Q5JIZ5|TKSP_THEKO	*-**	Subtilisin-like serine protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf07165g01009.1	ref|NP_001276150.1|	--*-	homeobox protein knotted-1-like 1-like [Glycine max] gb|AET87100.1| fused compound leaf 2 [Glycine max]		
Niben101Scf00809g01007.1	sp|Q5JS54|PSMG4_HUMAN	***-	Proteasome assembly chaperone 4		
Niben101Scf05437g03009.1	AT4G12690.1	***-	Plant protein of unknown function (DUF868) LENGTH=285	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf07017g00005.1	AT5G01850.1	****	Protein kinase superfamily protein LENGTH=333	IPR011009 (Protein kinase-like domain), IPR015784 (Putative serine/threonine-protein kinase, plants)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00442g01003.1	sp|Q98A73|METE_RHILO	--*-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase		
Niben101Scf05767g01008.1	sp|Q04980|LTI65_ARATH	--*-	Low-temperature-induced 65 kDa protein		
Niben101Scf07586g02003.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf01494g09005.1	sp|Q9T048|DRL27_ARATH	***-	Disease resistance protein	IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0043531 (ADP binding)
Niben101Scf06295g04004.1	AT4G21380.1	*-**	receptor kinase 3 LENGTH=850	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR017853 (Glycoside hydrolase superfamily), IPR029070 (Chitinase insertion domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004568 (chitinase activity), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02602g01018.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf03015g01002.1	AT2G18600.1	*-*-	Ubiquitin-conjugating enzyme family protein LENGTH=185	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf05030g05011.1	sp|Q9SU40|SKU5_ARATH	***-	Monocopper oxidase-like protein SKU5	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf13229g02003.1			Unknown protein		
Niben101Scf07231g04010.1	AT3G28740.1	***-	Cytochrome P450 superfamily protein LENGTH=509	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11008g01001.1	sp|Q9SS44|TF2B2_ARATH	*-**	Transcription initiation factor IIB-2	IPR000812 (Transcription factor TFIIB)	GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf10381g00013.1	sp|Q9LXT9|CALS3_ARATH	*-**	Callose synthase 3	IPR003440 (Glycosyl transferase, family 48)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf04495g00027.1	sp|Q9SJ06|FB115_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf38838g00004.1	sp|Q9QXX8|NUFP1_MOUSE	--*-	Nuclear fragile X mental retardation-interacting protein 1	IPR019496 (Nuclear fragile X mental retardation-interacting protein 1, conserved domain)	
Niben101Scf10191g01007.1	sp|Q93ZH2|NFYA3_ARATH	*-**	Nuclear transcription factor Y subunit A-3	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0016602 (CCAAT-binding factor complex)
Niben101Scf00917g04015.1	ref|NP_565550.1|	****	protein RER1C1 [Arabidopsis thaliana] RecName: Full=Protein RER1C; Short=AtRER1C [Arabidopsis thaliana] dbj|BAA33862.1| AtRER1C [Arabidopsis thaliana] gb|AAL47450.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAB87102.2| putative integral membrane protein [Arabidopsis thaliana] gb|AAM19906.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAM63458.1| putative integral membrane protein [Arabidopsis thaliana] gb|AEC07439.1| protein RER1C1 [Arabidopsis thaliana]	IPR004932 (Retrieval of early ER protein Rer1)	GO:0016021 (integral component of membrane)
Niben101Scf13703g01007.1	sp|Q9SW09|RS101_ARATH	*-*-	40S ribosomal protein S10-1	IPR005326 (Plectin/S10, N-terminal)	
Niben101Scf05692g01006.1	ref|XP_007020738.1|	***-	LIM and calponin domains-containing protein 1, putative [Theobroma cacao] gb|EOY12263.1| LIM and calponin domains-containing protein 1, putative [Theobroma cacao]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf08341g08003.1	emb|CDY24423.1|	--*-	BnaCnng04900D [Brassica napus]		
Niben101Scf03738g03024.1	sp|Q971C9|RL7A_SULTO	*-*-	50S ribosomal protein L7Ae	IPR018492 (Ribosomal protein L7Ae/L8/Nhp2 family), IPR029064 (50S ribosomal protein L30e-like)	GO:0003723 (RNA binding), GO:0005730 (nucleolus), GO:0030529 (ribonucleoprotein complex), GO:0042254 (ribosome biogenesis)
Niben101Scf01222g02013.1	AT5G19010.1	****	mitogen-activated protein kinase 16 LENGTH=567	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02027g02004.1	ref|XP_002511069.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF51671.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00734g03003.1	ref|WP_027078176.1|	--*-	2-oxoglutarate dehydrogenase [Maribacter antarcticus]		
Niben101Scf04783g13005.1	sp|Q6INH1|RN157_XENLA	*-*-	RING finger protein 157	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00854g07048.1	sp|A6GZA3|RS12_FLAPJ	*-**	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf03791g01002.1	sp|Q501G5|FB250_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01385g01015.1	sp|Q0WRX3|SCP40_ARATH	****	Serine carboxypeptidase-like 40	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06698g03023.1	AT5G42420.1	***-	Nucleotide-sugar transporter family protein LENGTH=350	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf09264g00009.1	sp|P58667|ISPG_CLOPE	*-**	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	IPR004588 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0005506 (iron ion binding), GO:0008299 (isoprenoid biosynthetic process), GO:0016114 (terpenoid biosynthetic process), GO:0046429 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity), GO:0055114 (oxidation-reduction process)
Niben101Ctg11831g00003.1	sp|Q9FPT1|UBP12_ARATH	*-**	Ubiquitin carboxyl-terminal hydrolase 12	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf08413g00003.1	sp|Q9FXJ2|GDL7_ARATH	****	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016298 (lipase activity), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf03628g03004.1	sp|Q8S8N2|CLE5_ARATH	***-	CLAVATA3/ESR (CLE)-related protein 5		
Niben101Scf17688g00020.1	sp|Q03585|RPOA1_THEAC	*-**	DNA-directed RNA polymerase subunit A'	IPR006592 (RNA polymerase, N-terminal), IPR007081 (RNA polymerase Rpb1, domain 5), IPR015801 (Copper amine oxidase, N2/N3-terminal), IPR021602 (Protein of unknown function DUF3223)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005507 (copper ion binding), GO:0006351 (transcription, DNA-templated), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding)
Niben101Scf02468g02002.1	sp|O50003|RL12_PRUAR	***-	60S ribosomal protein L12	IPR000911 (Ribosomal protein L11/L12)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10559g01036.1	sp|Q9SHE9|LBD4_ARATH	--*-	LOB domain-containing protein 4	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf00332g08004.1	AT1G56423.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=270		
Niben101Scf00439g10057.1	sp|Q6PC62|SPG21_DANRE	***-	Maspardin	IPR026151 (Maspardin), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf11299g00004.1	sp|O23970|GPX1_HELAN	****	Glutathione peroxidase 1	IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold)	GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process)
Niben101Scf02536g00003.1	gb|ADQ43232.1|	*-*-	alpha-galactosidase, partial [Vitis vinifera]	IPR008811 (Glycosyl hydrolases 36)	
Niben101Scf13103g01047.1	sp|Q40585|VATL_TOBAC	*-**	V-type proton ATPase 16 kDa proteolipid subunit	IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain)
Niben101Scf01133g09011.1			Unknown protein		
Niben101Scf00018g01002.1	AT1G76920.1	***-	F-box family protein LENGTH=374	IPR001810 (F-box domain), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf05839g00003.1	AT1G68680.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; Has 20 Blast hits to 20 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=75		
Niben101Scf11471g00009.1	sp|Q8NFV4|ABHDB_HUMAN	--*-	Alpha/beta hydrolase domain-containing protein 11	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01702g03008.1	sp|P46689|GASA1_ARATH	***-	Gibberellin-regulated protein 1	IPR003854 (Gibberellin regulated protein)	
Niben101Scf06385g00013.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf01489g01032.1	emb|CDX90488.1|	-**-	BnaA03g42930D [Brassica napus]		
Niben101Scf07214g00015.1	sp|Q9RFD5|BCHH_RHOS4	*-*-	Magnesium-chelatase subunit H	IPR003672 (CobN/magnesium chelatase)	GO:0009058 (biosynthetic process)
Niben101Scf00541g00003.1	sp|Q11180|WHT1_CAEEL	*-**	ABC transporter ATP-binding protein/permease wht-1	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf09025g01007.1	sp|Q8LBB2|KING1_ARATH	***-	SNF1-related protein kinase regulatory subunit gamma-1	IPR000644 (CBS domain), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf03979g05004.1	sp|Q9LVQ5|PP432_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00218g04008.1	sp|B5YHP1|KAD_THEYD	****	Adenylate kinase	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004127 (cytidylate kinase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0006207 ('de novo' pyrimidine nucleobase biosynthetic process), GO:0006221 (pyrimidine nucleotide biosynthetic process), GO:0009041 (uridylate kinase activity), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf00163g15011.1			Unknown protein		
Niben101Scf01450g00008.1			Unknown protein		
Niben101Scf13643g01012.1	sp|Q06394|ML146_PAPSO	-**-	Major latex protein 146	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf03777g00018.1	sp|Q39817|CALX_SOYBN	***-	Calnexin homolog	IPR001580 (Calreticulin/calnexin), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005783 (endoplasmic reticulum), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf00505g06002.1	sp|Q41073|NLTP_PINTA	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf00113g04002.1			Unknown protein	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf15631g01001.1	AT5G16520.1	***-	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=608		
Niben101Scf04015g02018.1	ref|WP_008316364.1|	***-	beta-propeller domain-containing protein, methanol dehydrogenase [Leptolyngbya sp. PCC 6406]	IPR007621 (TPM domain)	
Niben101Scf00646g03017.1	AT2G01080.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=231	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf08211g03008.1	ref|XP_007024432.1|	*-*-	Dentin sialoph -related, putative isoform 2 [Theobroma cacao]		
Niben101Scf04456g01001.1	sp|Q9FIX3|PP407_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf25246g00002.1	sp|Q04614|NU4LM_ARATH	--*-	NADH-ubiquinone oxidoreductase chain 4L		
Niben101Scf11756g03009.1	gb|ETO32673.1|	--*-	Ulp1 protease family, catalytic domain containing protein [Reticulomyxa filosa]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00236g01011.1	gb|AIU49542.1|	***-	AT5G11810-like protein, partial [Solanum lycopersicum]		
Niben101Scf07034g01009.1	AT3G51050.1	***-	FG-GAP repeat-containing protein LENGTH=698		
Niben101Scf01292g02010.1	sp|Q2Y681|CCA_NITMU	--*-	Multifunctional CCA protein	IPR002646 (Poly A polymerase, head domain)	GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf07137g01013.1	AT3G03940.1	****	Protein kinase family protein LENGTH=701	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02344g03003.1	sp|Q71G51|TBA_NEOCA	*-*-	Tubulin alpha chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf03541g00022.1	sp|Q9M0M5|SCL13_ARATH	***-	Scarecrow-like protein 13	IPR005202 (Transcription factor GRAS), IPR030005 (Scarecrow-like protein 13)	
Niben101Scf14194g00001.1	AT5G48620.1	*-*-	Disease resistance protein (CC-NBS-LRR class) family LENGTH=908	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf07182g01007.1	sp|P52855|RLA1_MAIZE	--*-	60S acidic ribosomal protein P1		
Niben101Scf04078g02005.1	gb|AGT16868.1|	*-**	Rubisco LS methyltransferase, substrate-binding domain [Saccharum hybrid cultivar R570]	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf11829g00002.1	sp|P48660|COX2_HORSE	*-**	Cytochrome c oxidase subunit 2	IPR008972 (Cupredoxin)	GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0016020 (membrane)
Niben101Scf00085g03010.1	AT5G25950.1	***-	Protein of Unknown Function (DUF239) LENGTH=432	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf06541g00008.1	sp|C4XGC2|NQOR_DESMR	--*-	NAD(P)H dehydrogenase (quinone)	IPR029039 (Flavoprotein-like)	
Niben101Scf08873g00007.1	emb|CDY16734.1|	*-*-	BnaA09g06480D [Brassica napus]		
Niben101Scf00114g00010.1	sp|Q54NA3|ATG9_DICDI	***-	Autophagy-related protein 9	IPR007241 (Autophagy-related protein 9)	
Niben101Scf02751g04009.1	sp|P56402|AQP2_MOUSE	***-	Aquaporin-2	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01811g00002.1	sp|Q9HSF6|RNH_HALSA	*-**	Ribonuclease HI	IPR011320 (Ribonuclease H1, N-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf02831g02012.1	sp|Q8BVH9|METL6_MOUSE	***-	Methyltransferase-like protein 6	IPR013217 (Methyltransferase type 12), IPR026113 (Methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01008g00004.1	sp|Q94ID6|ERF81_ARATH	*-**	Ethylene-responsive transcription factor 12	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10947g01017.1	sp|P50346|RLA0_SOYBN	***-	60S acidic ribosomal protein P0	IPR001790 (Ribosomal protein L10/acidic P0), IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation), GO:0042254 (ribosome biogenesis)
Niben101Scf27854g00003.1	emb|CDX80466.1|	***-	BnaC07g29780D [Brassica napus]	IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf05750g00006.1	sp|Q3MAS0|ATPB_ANAVT	****	ATP synthase subunit beta	IPR005722 (ATPase, F1 complex, beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015986 (ATP synthesis coupled proton transport), GO:0015992 (proton transport), GO:0046034 (ATP metabolic process), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Scf06149g00006.1			Unknown protein		
Niben101Scf02513g08002.1	AT4G33500.1	*-*-	Protein phosphatase 2C family protein LENGTH=724	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Ctg12123g00001.1	sp|P30184|AMPL1_ARATH	*-**	Leucine aminopeptidase 1	IPR011356 (Leucine aminopeptidase/peptidase B)	GO:0004177 (aminopeptidase activity), GO:0005622 (intracellular), GO:0005737 (cytoplasm), GO:0006508 (proteolysis), GO:0008235 (metalloexopeptidase activity), GO:0019538 (protein metabolic process), GO:0030145 (manganese ion binding)
Niben101Scf02462g03009.1	AT3G28040.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1016	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00150g02008.1			Unknown protein		
Niben101Scf09426g01002.1	AT3G23170.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=107		
Niben101Scf04077g01013.1	sp|Q56X05|PPR15_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01623g18016.1	sp|B8BMI1|MCM7_ORYSI	****	DNA replication licensing factor MCM7	IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027925 (MCM N-terminal domain)	GO:0003677 (DNA binding), GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006270 (DNA replication initiation), GO:0042555 (MCM complex)
Niben101Scf02902g00005.1	AT2G31290.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=415	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf33322g00001.1	sp|Q8W4G6|CRK15_ARATH	*-**	Cysteine-rich receptor-like protein kinase 15	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08263g01014.1	AT1G03445.1	*-*-	Serine/threonine protein phosphatase family protein LENGTH=793	IPR015915 (Kelch-type beta propeller), IPR029052 (Metallo-dependent phosphatase-like)	GO:0005515 (protein binding), GO:0016787 (hydrolase activity)
Niben101Scf00288g07014.1	sp|O22927|GDL42_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01917g03007.1	sp|Q9XIE6|ALA3_ARATH	****	Phospholipid-transporting ATPase 3	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf03515g00076.1	sp|A1USY0|NUON_BARBK	--*-	NADH-quinone oxidoreductase subunit N		
Niben101Scf06080g04017.1	ref|XP_002368067.1|	--*-	ppg3, putative [Toxoplasma gondii ME49] gb|EPT28906.1| omega secalin, putative [Toxoplasma gondii ME49]		
Niben101Scf04793g00006.1	ref|XP_007029023.1|	--*-	Emb:CAB82953.1, putative [Theobroma cacao] gb|EOY09525.1| Emb:CAB82953.1, putative [Theobroma cacao]		
Niben101Scf15349g00009.1	sp|Q811D2|ANR26_MOUSE	*-*-	Ankyrin repeat domain-containing protein 26	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf04551g01013.1	sp|Q08069|RS8_MAIZE	***-	40S ribosomal protein S8	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04992g02016.1	AT4G03600.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=162		
Niben101Scf08812g01008.1	sp|Q38861|XPB1_ARATH	****	DNA repair helicase XPB1	IPR001161 (Helicase Ercc3), IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0004003 (ATP-dependent DNA helicase activity), GO:0005524 (ATP binding), GO:0006289 (nucleotide-excision repair), GO:0016787 (hydrolase activity)
Niben101Scf00621g06003.1	AT4G03000.1	***-	RING/U-box superfamily protein LENGTH=814	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00683g03018.1	sp|Q49L12|ATPF_EUCGG	*-**	ATP synthase subunit b, chloroplastic	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf01866g01032.1			Unknown protein		
Niben101Scf36335g00010.1	sp|Q6DR10|TBL43_ARATH	***-	Protein trichome birefringence-like 43	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf08863g01007.1	AT5G39410.1	***-	Saccharopine dehydrogenase LENGTH=454	IPR005097 (Saccharopine dehydrogenase / Homospermidine synthase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04765g01003.1	AT1G48320.1	***-	Thioesterase superfamily protein LENGTH=156	IPR029069 (HotDog domain)	
Niben101Scf01795g16007.1			Unknown protein		
Niben101Scf03221g00026.1	sp|O81242|RHL1_ARATH	***-	DNA-binding protein RHL1		
Niben101Scf05078g02011.1	sp|Q6K609|GRXC3_ORYSJ	***-	Glutaredoxin-C3	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf16582g00014.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02351g08011.1	sp|B8GWS2|EFTS_CAUCN	****	Elongation factor Ts	IPR001816 (Translation elongation factor EFTs/EF1B)	GO:0003746 (translation elongation factor activity), GO:0005622 (intracellular), GO:0006414 (translational elongation)
Niben101Scf02517g18011.1	sp|Q4ULG1|ODP2_RICFE	***-	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	IPR000089 (Biotin/lipoyl attachment), IPR001078 (2-oxoacid dehydrogenase acyltransferase, catalytic domain), IPR004167 (E3-binding domain), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf02437g02019.1	AT3G21790.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=495	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02907g06011.1	sp|P42327|ADH2_GEOSE	***-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06883g00001.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf00170g04002.1	sp|Q7M443|CHIT2_TULBA	***-	Chitinase 2	IPR000677 (2S globulin), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf15694g00008.1	AT5G36670.1	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=1193	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04950g05002.1	sp|Q6YXH5|ZHD1_ORYSJ	***-	Zinc-finger homeodomain protein 1	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf04113g14004.1	sp|Q92383|MAG1_SCHPO	****	DNA-3-methyladenine glycosylase 1	IPR011257 (DNA glycosylase), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair)
Niben101Scf19719g01003.1	sp|Q4QMS6|RL7_HAEI8	*-*-	50S ribosomal protein L7/L12	IPR000206 (Ribosomal protein L7/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07638g02004.1	AT3G07610.3	*-*-	Transcription factor jumonji (jmjC) domain-containing protein LENGTH=1049		
Niben101Scf04724g04011.1	AT5G24314.2	***-	plastid transcriptionally active7 LENGTH=169		
Niben101Scf12515g00027.1	ref|NP_001234202.1|	*-*-	NRC1 [Solanum lycopersicum] gb|ABC26878.1| NRC1 [Solanum lycopersicum]		
Niben101Scf06896g01007.1	gb|ADM75410.1|	*-*-	late embryogenesis abundant-like protein, partial [Picea sitchensis]	IPR009646 (Root cap)	
Niben101Scf01592g00010.1	sp|Q27RY7|YCF2_SOLTU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf04861g00025.1	sp|Q9HCK8|CHD8_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 8	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf05506g02016.1	sp|P82888|H4_OLILU	***-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly), GO:0046982 (protein heterodimerization activity)
Niben101Scf08156g06007.1	sp|Q5RF63|RECQ1_PONAB	--**	ATP-dependent DNA helicase Q1	IPR002121 (HRDC domain), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR018982 (RQC domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003824 (catalytic activity), GO:0005622 (intracellular), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0043140 (ATP-dependent 3'-5' DNA helicase activity), GO:0044237 (cellular metabolic process)
Niben101Scf01964g11013.1	gb|KEH43193.1|	--*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf04995g07007.1	AT1G56630.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=485	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf03419g12004.1	sp|Q8T135|KIF5_DICDI	*-**	Kinesin-related protein 5	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf01326g00008.1	sp|Q08435|PMA1_NICPL	*-*-	Plasma membrane ATPase 1	IPR004014 (Cation-transporting P-type ATPase, N-terminal)	
Niben101Scf03702g01002.1	AT5G19900.1	*-*-	PRLI-interacting factor, putative LENGTH=494		
Niben101Scf00863g01020.1			Unknown protein		
Niben101Scf04879g00002.1	sp|Q8LPG9|IQD14_ARATH	*-*-	Protein IQ-DOMAIN 14	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf06404g00014.1	ref|WP_031471927.1|	--*-	creatinine amidohydrolase [[Clostridium] aminophilum]		
Niben101Scf02911g07002.1	sp|Q9M0M5|SCL13_ARATH	***-	Scarecrow-like protein 13	IPR005202 (Transcription factor GRAS), IPR030005 (Scarecrow-like protein 13)	
Niben101Scf04731g00001.1	sp|Q67ZU1|LIP2_ARATH	***-	Triacylglycerol lipase 2	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf16937g00003.1	sp|Q9LUJ2|PP249_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02911g03016.1	AT1G12030.1	*-*-	Protein of unknown function (DUF506) LENGTH=295	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf01418g01002.1	sp|Q6K7G9|GUN8_ORYSJ	*-*-	Endoglucanase 8	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00905g10002.1	sp|B3GS44|LRE_ARATH	***-	GPI-anchored protein LORELEI		
Niben101Scf07066g05005.1	gb|ADR31620.1|	***-	DUF579 protein [Populus trichocarpa]	IPR021148 (Putative polysaccharide biosynthesis protein)	
Niben101Scf04237g00021.1			Unknown protein		
Niben101Scf07007g03012.1	sp|Q6PH57|GBB1_DANRE	*-**	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf05713g03006.1	AT4G20970.1	****	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=190	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01237g12002.1	ref|NP_001042116.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf01076g00005.1	sp|O22190|GH33_ARATH	***-	Indole-3-acetic acid-amido synthetase GH3.3	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf05290g00010.1	sp|O23970|GPX1_HELAN	****	Glutathione peroxidase 1	IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029760 (Glutathione peroxidase conserved site)	GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process)
Niben101Scf09565g01013.1			Unknown protein		
Niben101Scf03834g03011.1	emb|CDY32810.1|	*-*-	BnaC08g02320D [Brassica napus]		
Niben101Scf08240g01013.1			Unknown protein		
Niben101Scf14479g01006.1	AT2G17970.1	*-*-	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=507		
Niben101Scf04424g04004.1	AT1G52360.2	***-	Coatomer, beta' subunit LENGTH=970	IPR016453 (Coatomer beta' subunit (COPB2))	GO:0005198 (structural molecule activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf00370g04021.1			Unknown protein		
Niben101Scf06290g01007.1	sp|Q6ML73|LON1_BDEBA	*-*-	Lon protease 1	IPR003111 (Peptidase S16, lon N-terminal), IPR015947 (PUA-like domain)	GO:0004176 (ATP-dependent peptidase activity), GO:0006508 (proteolysis)
Niben101Scf02240g03012.1	sp|Q6YXN9|PSBC_PHYPA	*-**	Photosystem II CP43 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf06078g03002.1	sp|B4TQC2|FADJ_SALSV	*-*-	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR014748 (Crontonase, C-terminal), IPR018376 (Enoyl-CoA hydratase/isomerase, conserved site), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf12428g00002.1	AT4G18930.1	****	RNA ligase/cyclic nucleotide phosphodiesterase family protein LENGTH=181	IPR009097 (RNA ligase/cyclic nucleotide phosphodiesterase), IPR012386 (2',3'-cyclic-nucleotide 3'-phosphodiesterase)	GO:0004112 (cyclic-nucleotide phosphodiesterase activity)
Niben101Scf15979g01001.1	ref|NP_001053190.1|	***-	product [Oryza sativa Japonica Group]	IPR006946 (Protein of unknown function DUF642)	
Niben101Scf03937g01012.1			Unknown protein		
Niben101Scf00761g05013.1	sp|O49436|PP327_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01818g08023.1	ref|XP_002869709.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH45968.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf08211g01011.1	sp|Q43111|PME3_PHAVU	****	Pectinesterase 3	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02653g01002.1	sp|P52855|RLA1_MAIZE	***-	60S acidic ribosomal protein P1	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf06059g02006.1	sp|Q9T068|EPFL2_ARATH	***-	EPIDERMAL PATTERNING FACTOR-like protein 2		
Niben101Scf04445g02002.1	gb|AGS78072.1|	*-*-	legume-specific protein [Aeschynomene indica]		
Niben101Scf00182g01003.1	sp|B5EZJ2|RBN_SALA4	*-*-	Ribonuclease BN	IPR001279 (Beta-lactamase-like)	
Niben101Scf00109g05016.1	sp|Q9FQ20|SCC12_ARATH	*-*-	Sister chromatid cohesion 1 protein 2	IPR006910 (Rad21/Rec8-like protein, N-terminal)	GO:0005515 (protein binding)
Niben101Scf00111g01018.1	AT3G44850.1	****	Protein kinase superfamily protein LENGTH=534	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf14010g01018.1	emb|CDX81532.1|	***-	BnaC02g18360D [Brassica napus]		
Niben101Scf05183g09004.1	AT3G59920.1	****	RAB GDP dissociation inhibitor 2 LENGTH=444	IPR018203 (GDP dissociation inhibitor)	GO:0005093 (Rab GDP-dissociation inhibitor activity), GO:0015031 (protein transport)
Niben101Scf05929g05009.1	sp|B0K0Y2|LEUC_THEPX	***-	3-isopropylmalate dehydratase large subunit	IPR006251 (Homoaconitase/3-isopropylmalate dehydratase, large subunit), IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process), GO:0008652 (cellular amino acid biosynthetic process), GO:0016836 (hydro-lyase activity), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf00491g02004.1	sp|Q8VYI9|NLTL5_ARATH	--**	Non-specific lipid-transfer protein-like protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf02757g04026.1			Unknown protein		
Niben101Scf00457g10008.1	gb|KEH24041.1|	*-*-	MFS transporter [Medicago truncatula]	IPR010658 (Nodulin-like)	
Niben101Scf04614g09004.1	sp|Q9FWA6|PP207_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf10465g02004.1	sp|Q5FHF7|NUOB_EHRRG	--*-	NADH-quinone oxidoreductase subunit B		
Niben101Scf12976g00011.1	sp|Q39786|PGLR_GOSHI	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03068g00033.1			Unknown protein		
Niben101Scf02227g06025.1	sp|Q6ZSG1|RN165_HUMAN	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04537g00009.1	sp|Q32PD0|FCF1_BOVIN	***-	rRNA-processing protein FCF1 homolog	IPR006984 (rRNA-processing protein Fcf1/Utp23), IPR029060 (PIN domain-like)	GO:0032040 (small-subunit processome)
Niben101Scf07045g00014.1	AT5G13490.1	***-	ADP/ATP carrier 2 LENGTH=385	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf08388g00006.1	sp|Q9LI65|WTR24_ARATH	*-*-	WAT1-related protein	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01529g01006.1	gb|KEH39049.1|	***-	wound-responsive family protein [Medicago truncatula]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf03863g00001.1	sp|Q9C652|RBP1_ARATH	*-**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01281g01007.1	sp|Q06FN8|CYB6_PELHO	*-*-	Cytochrome b6	IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf04941g03017.1	sp|Q6X4A2|CIPKV_ORYSJ	****	CBL-interacting protein kinase 31	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00176g00002.1	emb|CDY20997.1|	***-	BnaA08g25280D [Brassica napus]		
Niben101Scf31228g00005.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf24848g00016.1	sp|O24160|TGA21_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf22183g00003.1	sp|Q1MIK7|NUOH_RHIL3	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf04500g03001.1	sp|Q8N6M0|OTU6B_HUMAN	***-	OTU domain-containing protein 6B	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf01124g17006.1	ref|XP_005650247.1|	****	TOR kinase binding protein [Coccomyxa subellipsoidea C-169] gb|EIE25703.1| TOR kinase binding protein [Coccomyxa subellipsoidea C-169]	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf00207g01005.1	sp|Q9WV06|ANKR2_MOUSE	*-*-	Ankyrin repeat domain-containing protein 2	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf08716g01008.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03213g02007.1	AT5G43170.1	*-*-	zinc-finger protein 3 LENGTH=193	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	
Niben101Scf04182g04009.1	AT2G39690.1	***-	Protein of unknown function, DUF547 LENGTH=498	IPR006869 (Domain of unknown function DUF547), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	
Niben101Scf02366g04011.1	AT1G27045.1	*-*-	Homeobox-leucine zipper protein family LENGTH=227	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00821g12007.1	sp|Q9M2Z4|MSBP2_ARATH	*-*-	Membrane steroid-binding protein 2	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	
Niben101Scf02929g04049.1	sp|Q1GTK9|NUOK_SPHAL	--**	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf03619g04010.1	sp|P05034|DCHS_MORMO	--*-	Histidine decarboxylase		
Niben101Ctg13949g00001.1	ref|XP_002533670.1|	*-**	Inner membrane transport protein yjjL, putative [Ricinus communis] gb|EEF28716.1| Inner membrane transport protein yjjL, putative [Ricinus communis]	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03461g05003.1	gb|AFW84079.1|	*-*-	secondary cell wall glycosyltransferase family 47 [Zea mays]		
Niben101Scf02632g01006.1	sp|Q9SUD4|TET7_ARATH	***-	Tetraspanin-7	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf00611g11003.1	gb|KEH32491.1|	*-*-	WD repeat protein DWA1 [Medicago truncatula]		
Niben101Scf02268g06016.1	sp|Q9LFT8|CDKC1_ARATH	*-*-	Cyclin-dependent kinase C-1		
Niben101Scf01640g00002.1	emb|CDX85458.1|	***-	BnaA02g03550D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf06387g02001.1	ref|YP_007516856.1|	****	rib subunit L5 (mitochondrion) [Glycine max]	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01101g00005.1	sp|O80437|GPAT6_ARATH	***-	Glycerol-3-phosphate 2-O-acyltransferase 6	IPR002123 (Phospholipid/glycerol acyltransferase), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf03790g03001.1	gb|ABL97972.1|	***-	serine-rich protein [Brassica rapa] emb|CDY19808.1| BnaA09g04610D [Brassica napus]		
Niben101Scf00606g00010.1	AT1G19730.1	***-	Thioredoxin superfamily protein LENGTH=119	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00751g04001.1	sp|Q9FKR3|PP404_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07825g06006.1	sp|Q9M302|PP270_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00614g00026.1	AT4G10720.1	***-	Ankyrin repeat family protein LENGTH=445	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf00219g06004.1	AT4G16580.1	***-	Protein phosphatase 2C family protein LENGTH=467	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf07091g01005.1	sp|Q9SJK3|AGO5_ARATH	***-	Protein argonaute 5	IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf05767g00013.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02622g08012.1	AT3G01800.1	***-	Ribosome recycling factor LENGTH=267	IPR002661 (Ribosome recycling factor), IPR023584 (Ribosome recycling factor domain), IPR024946 (Arginine repressor C-terminal-like domain)	GO:0006412 (translation)
Niben101Scf03747g02003.1	AT4G37510.1	****	Ribonuclease III family protein LENGTH=537	IPR011907 (Ribonuclease III)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0006396 (RNA processing), GO:0016075 (rRNA catabolic process)
Niben101Scf03437g02035.1			Unknown protein		
Niben101Scf07825g00004.1	AT5G12460.1	***-	Protein of unknown function (DUF604) LENGTH=441	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf07527g03019.1	sp|Q9SXD8|PPR90_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05584g04020.1	sp|P29060|CHIA_TOBAC	***-	Acidic endochitinase	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06649g00001.1	sp|Q7SBC5|GMT_NEUCR	***-	GDP-mannose transporter	IPR029663 (GDP-mannose transporter GONST4, plant)	GO:0005794 (Golgi apparatus), GO:0015780 (nucleotide-sugar transport)
Niben101Scf00887g04015.1	AT1G48405.1	***-	Kinase interacting (KIP1-like) family protein LENGTH=297	IPR011684 (KIP1-like)	
Niben101Scf02077g04009.1	AT5G62570.2	***-	Calmodulin binding protein-like LENGTH=494	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf04406g00013.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf03810g08009.1	AT1G06560.1	*-*-	NOL1/NOP2/sun family protein LENGTH=599	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00171g00013.1	sp|C5WZH0|ITPA_SORBI	*-*-	Inosine triphosphate pyrophosphatase	IPR029001 (Inosine triphosphate pyrophosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf06042g03020.1	sp|Q9SKI4|RFA1A_ARATH	****	Replication protein A 70 kDa DNA-binding subunit A	IPR004591 (Replication factor A protein 1)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0006310 (DNA recombination)
Niben101Scf00096g06002.1			Unknown protein		
Niben101Scf04145g00014.1	gb|AAB01558.1|	-**-	late embryogenesis abundant protein [Picea glauca]		
Niben101Scf04000g01030.1	AT1G14920.1	*-*-	GRAS family transcription factor family protein LENGTH=533	IPR005202 (Transcription factor GRAS)	
Niben101Scf03600g03016.1	emb|CDY53329.1|	***-	BnaAnng12320D [Brassica napus]		
Niben101Scf01779g03010.1	sp|Q9M086|DCAF1_ARATH	***-	DDB1- and CUL4-associated factor homolog 1	IPR006594 (LisH dimerisation motif), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf08309g01008.1	sp|Q9ZRA2|HGD_ARATH	****	Homogentisate 1,2-dioxygenase	IPR005708 (Homogentisate 1,2-dioxygenase), IPR014710 (RmlC-like jelly roll fold)	GO:0004411 (homogentisate 1,2-dioxygenase activity), GO:0006559 (L-phenylalanine catabolic process), GO:0006570 (tyrosine metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf09621g00001.1	AT3G23700.1	*-**	Nucleic acid-binding proteins superfamily LENGTH=392	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding)
Niben101Scf25055g00001.1	sp|Q8LB02|SDHB2_ARATH	****	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial	IPR004489 (Succinate dehydrogenase/fumarate reductase iron-sulphur protein), IPR009051 (Alpha-helical ferredoxin), IPR012675 (Beta-grasp domain), IPR017896 (4Fe-4S ferredoxin-type, iron-sulphur binding domain)	GO:0006099 (tricarboxylic acid cycle), GO:0009055 (electron carrier activity), GO:0016491 (oxidoreductase activity), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06840g00011.1	sp|Q110B7|RL14_TRIEI	****	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf02074g02061.1	sp|Q6V0I7|FAT4_HUMAN	--*-	Protocadherin Fat 4		
Niben101Scf14513g00022.1	emb|CDX80283.1|	***-	BnaC09g34590D [Brassica napus]		
Niben101Scf29326g00002.1			Unknown protein		
Niben101Scf00128g05004.1	sp|Q9M907|PP217_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf12708g01004.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf10650g01007.1	gb|KGC97307.1|	***-	taurine catabolism dioxygenase TauD, TfdA family protein [Burkholderia pseudomallei]	IPR003819 (Taurine catabolism dioxygenase TauD/TfdA)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf11380g03006.1	sp|Q945T0|RALF_TOBAC	***-	Rapid alkalinization factor	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf12154g01014.1	sp|Q8L773|THO4A_ARATH	*-*-	THO complex subunit 4A		
Niben101Scf02538g07005.1	sp|Q3C1E9|ASF1_CHICK	***-	Histone chaperone ASF1	IPR006818 (Histone chaperone, ASF1-like)	GO:0005634 (nucleus), GO:0006333 (chromatin assembly or disassembly)
Niben101Scf03268g09014.1	gb|KEH37602.1|	*-*-	jasmonate zim-domain protein [Medicago truncatula]	IPR010399 (Tify)	
Niben101Scf05582g01004.1	AT2G29150.1	*-*-	NAD(P)-binding Rossmann-fold superfamily protein LENGTH=268	IPR002198 (Short-chain dehydrogenase/reductase SDR)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf17559g00003.1	ref|NP_001046699.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf04329g06015.1	sp|P74214|SRP54_SYNY3	****	Signal recognition particle protein	IPR004780 (Signal recognition particle protein Ffh), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0048500 (signal recognition particle)
Niben101Scf07695g00003.1	AT4G30490.1	***-	AFG1-like ATPase family protein LENGTH=497	IPR005654 (ATPase, AFG1-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02375g03003.1	sp|Q9T068|EPFL2_ARATH	***-	EPIDERMAL PATTERNING FACTOR-like protein 2		
Niben101Scf07825g04011.1	emb|CDY51239.1|	***-	BnaA03g06990D [Brassica napus]		
Niben101Scf01400g00004.1	AT2G32500.1	*-*-	Stress responsive alpha-beta barrel domain protein LENGTH=276	IPR011008 (Dimeric alpha-beta barrel)	
Niben101Scf17339g00004.1	sp|Q91WR8|GPX6_MOUSE	--**	Glutathione peroxidase 6	IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold)	GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process)
Niben101Scf03050g06017.1	sp|Q9ZUW3|PP172_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06482g03003.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05697g10011.1			Unknown protein		
Niben101Scf04926g04014.1	sp|Q1QPU2|ATPE2_NITHX	-***	ATP synthase epsilon chain 2	IPR001469 (ATPase, F1 complex, delta/epsilon subunit)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf04327g01005.1	AT2G21170.1	****	triosephosphate isomerase LENGTH=315	IPR000652 (Triosephosphate isomerase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004807 (triose-phosphate isomerase activity), GO:0006096 (glycolytic process), GO:0008152 (metabolic process)
Niben101Scf07030g05002.1	AT2G35585.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=156		
Niben101Scf17923g00002.1	sp|P61242|YCF2_SOLLC	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf14939g01019.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf12830g00010.1	ref|XP_007033409.1|	***-	Sarcolemmal membrane-associated protein, putative isoform 2 [Theobroma cacao] gb|EOY04335.1| Sarcolemmal membrane-associated protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf02694g03003.1	sp|Q8WXB1|MT21A_HUMAN	***-	Protein N-lysine methyltransferase METTL21A	IPR019410 (Nicotinamide N-methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00801g00012.1	AT5G18290.1	***-	Aquaporin-like superfamily protein LENGTH=243	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05566g02009.1	AT1G53350.1	***-	Disease resistance protein (CC-NBS-LRR class) family LENGTH=927	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf03239g02003.1	AT1G01470.1	***-	Late embryogenesis abundant protein LENGTH=151	IPR004864 (Late embryogenesis abundant protein, LEA-14), IPR013783 (Immunoglobulin-like fold)	GO:0009269 (response to desiccation)
Niben101Scf05183g01011.1	AT2G43990.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; Has 1419 Blast hits to 494 proteins in 144 species: Archae - 0; Bacteria - 300; Metazoa - 246; Fungi - 102; Plants - 31; Viruses - 2; Other Eukaryotes - 738 (source: NCBI BLink). LENGTH=632		
Niben101Scf00602g00012.1	sp|B4KRQ4|WDR48_DROMO	--*-	WD repeat-containing protein 48 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02537g06001.1	sp|Q9ZPE7|EXO_ARATH	***-	Protein EXORDIUM	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf00466g02021.1	sp|Q40585|VATL_TOBAC	****	V-type proton ATPase 16 kDa proteolipid subunit	IPR000245 (V-ATPase proteolipid subunit), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf11008g01002.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06382g00006.1	AT3G48730.1	****	glutamate-1-semialdehyde 2,1-aminomutase 2 LENGTH=472	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding), GO:0033014 (tetrapyrrole biosynthetic process), GO:0042286 (glutamate-1-semialdehyde 2,1-aminomutase activity)
Niben101Scf03343g00007.1	sp|Q9M817|PTR6_ARATH	*-*-	Protein NRT1/ PTR FAMILY 1.2	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05034g03006.1	sp|Q14676|MDC1_HUMAN	--*-	Mediator of DNA damage checkpoint protein 1		
Niben101Scf03463g02011.1	sp|A0KKI5|RSMF_AERHH	*-**	Ribosomal RNA small subunit methyltransferase F	IPR023267 (RNA (C5-cytosine) methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf00963g01017.1	sp|Q9LYN8|EXS_ARATH	***-	Leucine-rich repeat receptor protein kinase EXS	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf10991g00005.1	sp|Q69Q47|CIPKO_ORYSJ	*-**	CBL-interacting protein kinase 24	IPR000449 (Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal), IPR011009 (Protein kinase-like domain), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01695g02006.1	sp|B4LVS8|CARM1_DROVI	*-**	Histone-arginine methyltransferase CARMER	IPR025799 (Protein arginine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity)
Niben101Scf38299g00004.1	sp|Q9LJW0|PHO19_ARATH	***-	Phosphate transporter PHO1 homolog 9	IPR004331 (SPX, N-terminal), IPR004342 (EXS, C-terminal)	GO:0016021 (integral component of membrane)
Niben101Scf34081g00018.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03619g02006.1	emb|CDY65519.1|	***-	BnaA09g54290D [Brassica napus]		
Niben101Scf00551g06001.1	sp|P46290|RL31_NICGU	*-*-	60S ribosomal protein L31	IPR000054 (Ribosomal protein L31e), IPR023621 (Ribosomal protein L31e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04216g02007.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00878g01003.1	sp|Q86WJ1|CHD1L_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 1-like	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf01942g05030.1	AT4G21480.1	*-**	sugar transporter protein 12 LENGTH=502	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf05811g02011.1	sp|Q9ZW33|TIM10_ARATH	*-**	Mitochondrial import inner membrane translocase subunit TIM10	IPR004217 (Tim10/DDP family zinc finger), IPR027247 (Mitochondrial import inner membrane translocase subunit Tim10/Tim12)	GO:0045039 (protein import into mitochondrial inner membrane)
Niben101Scf13540g02002.1	sp|Q3BXV7|OPGH_XANC5	--*-	Glucans biosynthesis glucosyltransferase H		
Niben101Scf01763g01010.1	sp|Q41001|BCP_PEA	*-*-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf03592g01011.1	AT5G17270.1	*-*-	Protein prenylyltransferase superfamily protein LENGTH=899		
Niben101Scf02027g02005.1	ref|XP_002511068.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF51670.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08318g00007.1	gb|KEH26288.1|	*-*-	heavy metal-associated domain protein [Medicago truncatula]		
Niben101Scf00270g11008.1	sp|Q9FQ08|KU70_ARATH	*-**	ATP-dependent DNA helicase 2 subunit KU70	IPR002035 (von Willebrand factor, type A), IPR003034 (SAP domain), IPR006165 (Ku70)	GO:0000723 (telomere maintenance), GO:0003677 (DNA binding), GO:0003684 (damaged DNA binding), GO:0004003 (ATP-dependent DNA helicase activity), GO:0005634 (nucleus), GO:0006303 (double-strand break repair via nonhomologous end joining), GO:0042162 (telomeric DNA binding), GO:0043564 (Ku70:Ku80 complex)
Niben101Scf14726g00006.1	sp|O80872|TBL45_ARATH	*-*-	Protein trichome birefringence-like 45	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf10053g00026.1	AT5G27490.1	****	Integral membrane Yip1 family protein LENGTH=282	IPR006977 (Yip1 domain)	GO:0016020 (membrane)
Niben101Scf06042g03021.1	AT2G06510.1	*-*-	replication protein A 1A LENGTH=640	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf00171g00014.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf03965g00005.1	AT3G09100.2	*-**	mRNA capping enzyme family protein LENGTH=672	IPR001339 (mRNA capping enzyme), IPR013846 (mRNA capping enzyme, C-terminal), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004484 (mRNA guanylyltransferase activity), GO:0004725 (protein tyrosine phosphatase activity), GO:0006370 (7-methylguanosine mRNA capping), GO:0006397 (mRNA processing), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf02829g03019.1	sp|Q5RAJ5|STK36_PONAB	*-**	Serine/threonine-protein kinase 36	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07325g00035.1	sp|Q9LZ99|EXPA9_ARATH	***-	Expansin-A9	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf01534g02014.1			Unknown protein		
Niben101Scf16457g00006.1	AT5G51910.1	***-	TCP family transcription factor LENGTH=293	IPR005333 (Transcription factor, TCP)	
Niben101Scf08163g00001.1	sp|Q9LP45|PSD11_ARATH	***-	26S proteasome non-ATPase regulatory subunit 11 homolog	IPR000717 (Proteasome component (PCI) domain), IPR011990 (Tetratricopeptide-like helical domain), IPR013143 (PCI/PINT associated module)	GO:0005515 (protein binding)
Niben101Scf01025g04003.1	emb|CDY11222.1|	***-	BnaA03g00580D [Brassica napus]		
Niben101Scf06032g00007.1	emb|CDY20586.1|	*-*-	BnaC08g14720D [Brassica napus]		
Niben101Scf09716g01002.1	sp|Q8TF05|PP4R1_HUMAN	*-*-	Serine/threonine-protein phosphatase 4 regulatory subunit 1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02537g15006.1	sp|Q43125|CRY1_ARATH	***-	Cryptochrome-1	IPR002081 (Cryptochrome/DNA photolyase, class 1)	GO:0003913 (DNA photolyase activity), GO:0006281 (DNA repair)
Niben101Scf09130g03006.1	AT5G26200.1	*-*-	Mitochondrial substrate carrier family protein LENGTH=342	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf01521g08011.1	AT1G27090.1	***-	glycine-rich protein LENGTH=420		
Niben101Scf02041g04016.1	sp|Q9NTJ5|SAC1_HUMAN	****	Phosphatidylinositide phosphatase SAC1	IPR002013 (SAC domain), IPR030069 (Phosphoinositide phosphatase SAC6/7/8)	GO:0042578 (phosphoric ester hydrolase activity), GO:0052866 (phosphatidylinositol phosphate phosphatase activity)
Niben101Scf02853g00006.1	ref|WP_033776403.1|	--*-	permease [Salinispora pacifica]		
Niben101Scf10881g00028.1	dbj|BAD83480.2|	*-*-	NADH dehydrogenase subunit 4 (mitochondrion) [Nicotiana tabacum]		
Niben101Scf04276g00003.1	emb|CDY19752.1|	***-	BnaA09g04050D [Brassica napus]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf09767g00005.1	sp|Q91X20|ASH2L_MOUSE	*-*-	Set1/Ash2 histone methyltransferase complex subunit ASH2	IPR001870 (B30.2/SPRY domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005515 (protein binding)
Niben101Scf06525g03013.1	gb|AAA34120.1|	*-*-	mRNA inducible by salicylic acid or by TMV during Systemic Acquired Resistance response.' [Nicotiana tabacum]	IPR004297 (Systemic acquired resistance protein SAR)	
Niben101Scf04283g01009.1	emb|CDX90916.1|	*-*-	BnaA03g25960D [Brassica napus]	IPR003892 (Ubiquitin system component Cue)	GO:0005515 (protein binding)
Niben101Scf06928g01008.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001368 (TNFR/NGFR cysteine-rich region), IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf19068g00004.1	gb|ABF99235.1|	--**	GRF zinc finger family protein, expressed [Oryza sativa Japonica Group]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf02350g00004.1	sp|Q3T130|TM45B_BOVIN	-**-	Transmembrane protein 45B	IPR006904 (Protein of unknown function DUF716 (TMEM45))	
Niben101Scf11480g03024.1	AT2G24100.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=466		
Niben101Scf03739g06014.1	sp|P48505|UCR11_SOLTU	***-	Ubiquinol-cytochrome c reductase complex 6.7 kDa protein		
Niben101Scf09282g00004.1	AT5G03380.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=392	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf03107g01018.1	AT5G55340.1	***-	MBOAT (membrane bound O-acyl transferase) family protein LENGTH=333		
Niben101Scf06666g01011.1	sp|Q6EU39|MADS6_ORYSJ	*-**	MADS-box transcription factor 6	IPR000999 (Ribonuclease III domain), IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box), IPR003100 (PAZ domain), IPR014720 (Double-stranded RNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0006396 (RNA processing), GO:0046983 (protein dimerization activity)
Niben101Scf13973g02002.1	emb|CDX74851.1|	***-	BnaA05g05970D [Brassica napus]		
Niben101Scf05047g03011.1	ref|WP_022800425.1|	***-	secondary thiamine-phosphate synthase enzyme [Deinococcus sp. 2009]	IPR001602 (Uncharacterised protein family UPF0047)	
Niben101Scf16551g00007.1			Unknown protein		
Niben101Scf02074g04094.1			Unknown protein		
Niben101Scf05294g00026.1	sp|Q9C6W4|BGA15_ARATH	*-*-	Beta-galactosidase 15	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09960g00001.1	AT4G12690.1	***-	Plant protein of unknown function (DUF868) LENGTH=285	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf00646g09008.1	sp|Q9M2C0|VITH4_ARATH	***-	Vacuolar iron transporter homolog 4	IPR008217 (Ccc1 family)	
Niben101Scf01062g04006.1	sp|P74214|SRP54_SYNY3	*-**	Signal recognition particle protein	IPR000897 (Signal recognition particle, SRP54 subunit, GTPase domain), IPR007222 (Signal recognition particle receptor, alpha subunit, N-terminal), IPR011012 (Longin-like domain), IPR013822 (Signal recognition particle, SRP54 subunit, helical bundle), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005047 (signal recognition particle binding), GO:0005525 (GTP binding), GO:0005785 (signal recognition particle receptor complex), GO:0006184 (GTP catabolic process), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0006810 (transport), GO:0006886 (intracellular protein transport)
Niben101Scf15051g00010.1	AT5G22510.1	*-*-	alkaline/neutral invertase LENGTH=617	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf03047g01001.1	AT1G61667.1	***-	Protein of unknown function, DUF538 LENGTH=156	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf08478g03018.1	sp|Q1MIP2|RL13_RHIL3	***-	50S ribosomal protein L13	IPR005822 (Ribosomal protein L13), IPR023564 (Ribosomal protein L13 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02073g01015.1	sp|Q9FZ03|MAN2_SOLLC	*-*-	Mannan endo-1,4-beta-mannosidase 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf04044g22007.1	ref|XP_007023638.1|	-**-	To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao] gb|EOY26260.1| To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao]		
Niben101Scf10254g01014.1	sp|Q9FUT0|GSTU9_ARATH	***-	Glutathione S-transferase U9	IPR010987 (Glutathione S-transferase, C-terminal-like)	
Niben101Scf05411g02012.1	sp|Q3ZCI8|REEP4_BOVIN	*-*-	Receptor expression-enhancing protein 4	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Ctg15571g00008.1	sp|Q944G5|PTR44_ARATH	***-	Protein NRT1/ PTR FAMILY 2.10	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03515g00033.1			Unknown protein		
Niben101Scf01191g03010.1	sp|Q9LZB2|GDL74_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00981g02001.1	sp|Q93Z16|RPN2_ARATH	***-	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	IPR008814 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1)	GO:0006487 (protein N-linked glycosylation), GO:0008250 (oligosaccharyltransferase complex), GO:0016021 (integral component of membrane)
Niben101Scf03049g07019.1	sp|Q4P733|DED1_USTMA	*-**	ATP-dependent RNA helicase DED1	IPR001202 (WW domain), IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf00537g02022.1	ref|WP_010338661.1|	-**-	glyoxalase [Sphingobium yanoikuyae]	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf05917g01015.1	emb|CDY52343.1|	***-	BnaA09g38920D [Brassica napus]		
Niben101Scf13167g02014.1	AT1G30840.1	***-	purine permease 4 LENGTH=382	IPR000620 (EamA domain), IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf05700g00002.1	sp|Q6NKW9|E138_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 8	IPR013781 (Glycoside hydrolase, catalytic domain)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf08194g02023.1	sp|P53223|CAX4_YEAST	--*-	Dolichyldiphosphatase	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Scf10464g00019.1	sp|Q9JIF3|GTR8_MOUSE	--*-	Solute carrier family 2, facilitated glucose transporter member 8		
Niben101Scf06349g01008.1	sp|Q9LI83|ALA10_ARATH	****	Phospholipid-transporting ATPase 10	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf02543g02010.1	sp|B1AVH7|TBD2A_MOUSE	*-*-	TBC1 domain family member 2A	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf09792g03024.1	sp|Q9JHN8|STK19_MOUSE	***-	Serine/threonine-protein kinase 19	IPR018865 (Serine-threonine protein kinase 19)	
Niben101Scf02246g00003.1	ref|WP_015111244.1|	***-	single-stranded nucleic acid binding R3H domain-containing protein [N [Nostoc sp. PCC 7107]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02445g08002.1	ref|XP_003627838.1|	*-*-	DNA-directed RNA polymerase subunit [Medicago truncatula]	IPR015801 (Copper amine oxidase, N2/N3-terminal), IPR021602 (Protein of unknown function DUF3223)	GO:0005507 (copper ion binding), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding)
Niben101Scf14012g01016.1	ref|XP_003589451.1|	****	Pectinesterase inhibitor [Medicago truncatula] gb|AES92007.2| plant invertase/pectin methylesterase inhibitor [Medicago truncatula]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf05574g04008.1	ref|XP_002524242.1|	****	zinc ion binding protein, putative [Ricinus communis] gb|EEF38166.1| zinc ion binding protein, putative [Ricinus communis]	IPR001781 (Zinc finger, LIM-type), IPR022087 (Protein DA1 like)	GO:0008270 (zinc ion binding)
Niben101Scf03340g08007.1	AT1G34270.1	***-	Exostosin family protein LENGTH=477	IPR004263 (Exostosin-like)	
Niben101Scf04223g00008.1	sp|P83332|TLP1_PRUPE	***-	Thaumatin-like protein 1	IPR001938 (Thaumatin)	
Niben101Scf03403g03034.1	AT5G65470.1	*-*-	O-fucosyltransferase family protein LENGTH=504	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf03500g00003.1	AT3G43230.1	*-*-	RING/FYVE/PHD-type zinc finger family protein LENGTH=485		
Niben101Scf08762g00013.1	sp|P34102|PK3_DICDI	*-**	Protein kinase 3	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04194g00020.1	sp|Q10LJ2|MTP2_ORYSJ	--*-	Metal tolerance protein 2		
Niben101Scf01968g01005.1	ref|XP_003599284.1|	--*-	Helicase-like protein [Medicago truncatula]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf00508g09020.1	sp|Q9FXI5|IQD32_ARATH	*-*-	Protein IQ-DOMAIN 32	IPR000048 (IQ motif, EF-hand binding site), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf02222g01001.1	ref|NP_001048714.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf05750g02008.1	emb|CDY53329.1|	***-	BnaAnng12320D [Brassica napus]		
Niben101Scf01814g05022.1	gb|AES94740.2|	***-	transcription factor [Medicago truncatula]	IPR006869 (Domain of unknown function DUF547), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	
Niben101Scf02335g04009.1	sp|Q65E26|FABZ_BACLD	***-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	IPR010084 (Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ), IPR029069 (HotDog domain)	GO:0005737 (cytoplasm), GO:0006633 (fatty acid biosynthetic process), GO:0016836 (hydro-lyase activity)
Niben101Ctg12141g00005.1	AT5G19950.1	***-	Domain of unknown function (DUF1767) LENGTH=443		
Niben101Scf07459g00013.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]		
Niben101Scf02832g01014.1	sp|P25792|CYSP_SCHMA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf09025g02011.1	sp|Q5T0B9|ZN362_HUMAN	--*-	Zinc finger protein 362	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf09253g00027.1	sp|O34358|HTRA_BACSU	*-**	Serine protease Do-like HtrA	IPR001940 (Peptidase S1C), IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity), GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01619g00018.1	sp|F4I096|MED13_ARATH	*-*-	Mediator of RNA polymerase II transcription subunit 13		
Niben101Scf05886g03004.1	ref|WP_026786638.1|	*-*-	MULTISPECIES: hypothetical protein [Planktothrix]	IPR025067 (Protein of unknown function DUF4079)	
Niben101Scf25097g00001.1	sp|Q68RU4|YCF2_PANGI	*-*-	Protein Ycf2		
Niben101Scf12498g00015.1	AT5G18020.1	***-	SAUR-like auxin-responsive protein family LENGTH=91	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf07767g01005.1	sp|O81767|PP348_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00127g03002.1	sp|A2BRV3|APT_PROMS	--*-	Adenine phosphoribosyltransferase		
Niben101Scf13971g00002.1	gb|KEH39906.1|	***-	Smr (small MutS-related) domain protein [Medicago truncatula]		
Niben101Scf01927g09004.1	sp|Q6BSH2|SNF7_DEBHA	-***	Vacuolar-sorting protein SNF7	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf05713g02007.1	ref|XP_002509463.1|	*-**	structural constituent of cell wall, putative [Ricinus communis] gb|EEF50850.1| structural constituent of cell wall, putative [Ricinus communis]	IPR003882 (Pistil-specific extensin-like protein), IPR006041 (Pollen Ole e 1 allergen/extensin)	GO:0005199 (structural constituent of cell wall)
Niben101Scf00883g15030.1	sp|Q5SRE5|NU188_HUMAN	*-*-	Nucleoporin NUP188 homolog		
Niben101Scf03496g00022.1	ref|XP_003615152.1|	****	2-dehydro-3-deoxyphosphoheptonate aldolase (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase) [Medicago truncatula] gb|AES98110.1| phospho-2-dehydro-3-deoxyheptonate aldolase [Medicago truncatula]	IPR002480 (DAHP synthetase, class II)	GO:0003849 (3-deoxy-7-phosphoheptulonate synthase activity), GO:0009073 (aromatic amino acid family biosynthetic process)
Niben101Scf04610g01019.1	sp|Q9M069|E137_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 7	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03701g02007.1	sp|A2XUW1|CDKG2_ORYSI	*-**	Cyclin-dependent kinase G-2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01727g03004.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00152g20002.1	sp|P93024|ARFE_ARATH	****	Auxin response factor 5	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf02937g04001.1	AT1G72330.3	***-	alanine aminotransferase 2 LENGTH=553	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03889g01005.1	ref|XP_002512046.1|	--**	nucleic acid binding protein, putative [Ricinus communis] gb|EEF50715.1| nucleic acid binding protein, putative [Ricinus communis]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf11684g03001.1	AT1G08500.1	***-	early nodulin-like protein 18 LENGTH=228	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf08590g00007.1	sp|P81778|TL17_SPIOL	--*-	Thylakoid lumenal 17.4 kDa protein	IPR001646 (Pentapeptide repeat)	
Niben101Scf10763g00021.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02074g07080.1	ref|YP_009045741.1|	-**-	orf105a (mitochondrion) [Batis maritima] gb|AIC83344.1| orf105a (mitochondrion) [Batis maritima]		
Niben101Scf01494g09006.1	sp|O48677|PER6_ARATH	****	Peroxidase 6	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04643g02010.1	sp|Q9LGU6|METK3_ORYSJ	****	S-adenosylmethionine synthase 3	IPR002133 (S-adenosylmethionine synthetase)	GO:0004478 (methionine adenosyltransferase activity), GO:0005524 (ATP binding), GO:0006556 (S-adenosylmethionine biosynthetic process)
Niben101Scf06081g04001.1	sp|D3TLL6|LIS1_GLOMM	***-	Lissencephaly-1 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf00011g00020.1	sp|O23970|GPX1_HELAN	****	Glutathione peroxidase 1	IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029759 (Glutathione peroxidase active site), IPR029760 (Glutathione peroxidase conserved site)	GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process)
Niben101Scf01326g09013.1	sp|Q31RR1|TATA_SYNE7	--*-	Sec-independent protein translocase protein TatA	IPR003369 (Sec-independent protein translocase protein TatA/B/E)	GO:0008565 (protein transporter activity), GO:0015031 (protein transport)
Niben101Scf00672g04011.1	sp|B0R0I6|CHD8_DANRE	*-**	Chromodomain-helicase-DNA-binding protein 8	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR014012 (Helicase/SANT-associated, DNA binding), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029295 (Snf2 ATP coupling domain)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0042393 (histone binding)
Niben101Scf07036g02001.1	sp|A9BNG6|DNAJ_DELAS	*-*-	Chaperone protein DnaJ	IPR008971 (HSP40/DnaJ peptide-binding)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf01409g00012.1	ref|NP_001175401.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAH94129.1| [Oryza sativa Japonica Group]	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf01764g02024.1	sp|Q24K12|GPTC1_BOVIN	***-	G patch domain-containing protein 1	IPR000061 (SWAP/Surp), IPR000467 (G-patch domain), IPR011666 (Domain of unknown function DUF1604)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0006396 (RNA processing)
Niben101Scf02387g00010.1	sp|Q9FIA1|GDL87_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02486g04005.1	sp|Q93VV5|PTR16_ARATH	***-	Protein NRT1/ PTR FAMILY 4.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf10041g00025.1	AT3G03610.1	*-*-	ELMO/CED-12 family protein LENGTH=323	IPR006816 (Engulfment/cell motility, ELMO)	GO:0005856 (cytoskeleton), GO:0006909 (phagocytosis)
Niben101Scf10904g00004.1	sp|Q39123|ATHB8_ARATH	--*-	Homeobox-leucine zipper protein ATHB-8		
Niben101Scf03202g07011.1			Unknown protein		
Niben101Scf14479g01005.1	AT2G17970.1	***-	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=507	IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	
Niben101Scf02976g02003.1	AT1G31300.1	***-	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein LENGTH=278	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf07969g01012.1	ref|XP_007044418.1|	***-	Encodes protein with Uncharacterized protein function wh function whose expression is repressed by inoculation with Agrobacterium tumerifaciens isoform 1 [Theobroma cacao]		
Niben101Scf06394g03010.1	sp|Q08BT5|K1468_XENTR	*-*-	LisH domain and HEAT repeat-containing protein KIAA1468 homolog	IPR006594 (LisH dimerisation motif), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf07451g00011.1	sp|P50699|TLPH_ARATH	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf00550g00010.1	emb|CDX95654.1|	--*-	BnaC03g25350D [Brassica napus]		
Niben101Scf04191g00011.1	sp|Q8L7F9|B3GTF_ARATH	****	Beta-1,3-galactosyltransferase 15	IPR002659 (Glycosyl transferase, family 31), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane), GO:0030246 (carbohydrate binding)
Niben101Scf03068g03009.1	gb|ADL70586.1|	*-*-	indole-3-acetic acid inducible 9 [Arabidopsis thaliana]	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00332g12003.1	sp|F4I562|AP3M_ARATH	****	AP-3 complex subunit mu	IPR001392 (Clathrin adaptor, mu subunit), IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf07809g00009.1			Unknown protein		
Niben101Scf00917g04014.1	sp|A6TC19|FADJ_KLEP7	*-*-	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00245g06007.1	AT5G58520.1	***-	Protein kinase superfamily protein LENGTH=604	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg11190g00001.1	AT5G12890.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=488	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00944g07016.1	AT2G33460.1	*-*-	ROP-interactive CRIB motif-containing protein 1 LENGTH=224	IPR000095 (CRIB domain)	
Niben101Scf01943g01006.1			Unknown protein		
Niben101Scf03300g04004.1	ref|XP_007042350.1|	*-*-	SWIB complex BAF60b domain-containing protein, putative [Theobroma cacao] gb|EOX98181.1| SWIB complex BAF60b domain-containing protein, putative [Theobroma cacao]	IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding)
Niben101Scf01442g02012.1	sp|P85191|CP450_HELAN	*-*-	Cytochrome P450	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08785g00004.1	AT1G18160.1	*-**	Protein kinase superfamily protein LENGTH=992	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00854g07047.1	sp|P26855|ATP9_MARPO	--**	ATP synthase subunit 9, mitochondrial	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf15723g00008.1	emb|CCA16609.1|	--*-	conserved hypothetical protein [Albugo laibachii Nc14]	IPR003035 (RWP-RK domain)	
Niben101Scf01372g03003.1	AT5G04820.1	***-	ovate family protein 13 LENGTH=260	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf11399g00014.1	sp|Q2R4J4|C3H63_ORYSJ	*-*-	Zinc finger CCCH domain-containing protein 63	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf06698g03024.1	sp|Q58E26|TMX2_XENLA	***-	Thioredoxin-related transmembrane protein 2	IPR012336 (Thioredoxin-like fold)	
Niben101Scf10287g01019.1	sp|Q92576|PHF3_HUMAN	--*-	PHD finger protein 3	IPR001025 (Bromo adjacent homology (BAH) domain), IPR005162 (Retrotransposon gag domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03023g03008.1	sp|Q8RXT9|GDL8_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00509g03006.1	sp|Q10NX8|BGAL6_ORYSJ	*-*-	Beta-galactosidase 6	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf13164g02006.1	sp|Q9SUD8|PP340_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02004g00031.1	ref|WP_026326981.1|	***-	aldo/keto reductase [Proteiniphilum acetatigenes]	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf00960g13005.1			Unknown protein		
Niben101Scf11408g01009.1	sp|P42124|EZ_DROME	*-**	Histone-lysine N-methyltransferase E(z)	IPR001214 (SET domain), IPR003616 (Post-SET domain), IPR006560 (AWS domain)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0018024 (histone-lysine N-methyltransferase activity)
Niben101Scf01225g02009.1	AT1G05675.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=453	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00439g10058.1	AT2G45310.1	****	UDP-D-glucuronate 4-epimerase 4 LENGTH=437	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf09552g01003.1	AT4G24290.2	***-	MAC/Perforin domain-containing protein LENGTH=606	IPR020864 (Membrane attack complex component/perforin (MACPF) domain)	
Niben101Scf00442g05007.1	sp|Q6ZSG1|RN165_HUMAN	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03203g05017.1	AT4G15020.1	***-	hAT transposon superfamily LENGTH=768	IPR003656 (Zinc finger, BED-type), IPR007021 (Domain of unknown function DUF659), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding)
Niben101Scf05954g03005.1	sp|Q0WNJ6|CLAH1_ARATH	****	Clathrin heavy chain 1	IPR016341 (Clathrin, heavy chain)	GO:0005198 (structural molecule activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030130 (clathrin coat of trans-Golgi network vesicle), GO:0030132 (clathrin coat of coated pit)
Niben101Scf08020g01010.1	sp|Q5ZC82|LOG_ORYSJ	***-	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf29478g00001.1	ref|XP_002525617.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF36735.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08643g00020.1	sp|Q93ZB9|FACR3_ARATH	****	Fatty acyl-CoA reductase 3	IPR016040 (NAD(P)-binding domain), IPR026055 (Fatty acyl-CoA reductase)	GO:0080019 (fatty-acyl-CoA reductase (alcohol-forming) activity)
Niben101Scf09550g00005.1			Unknown protein		
Niben101Scf11299g00003.1	sp|Q9LDG2|TBL10_ARATH	***-	Protein trichome birefringence-like 10	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf14977g00013.1	sp|Q949Z1|PGLR4_ARATH	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05938g01013.1	emb|CDX82932.1|	***-	BnaC01g13820D [Brassica napus]		
Niben101Scf05395g01014.1	gb|ABF99235.1|	--**	GRF zinc finger family protein, expressed [Oryza sativa Japonica Group]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00111g04007.1	sp|Q8VYE5|E1312_ARATH	***-	Glucan endo-1,3-beta-glucosidase 12	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01784g05010.1	sp|O48724|WEB1_ARATH	***-	Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1	IPR008545 (WEB family)	
Niben101Scf01658g00006.1	AT3G18210.1	*-*-	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=394		
Niben101Scf01068g00008.1	sp|P46643|AAT1_ARATH	***-	Aspartate aminotransferase, mitochondrial	IPR000796 (Aspartate/other aminotransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf06553g00008.1	sp|F4HQX1|JAL3_ARATH	***-	Jacalin-related lectin 3	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf07586g02002.1	AT3G08600.1	***-	Protein of unknown function (DUF1191) LENGTH=316	IPR010605 (Protein of unknown function DUF1191), IPR013320 (Concanavalin A-like lectin/glucanase domain)	
Niben101Ctg13976g00004.1	sp|P23901|ALDR_HORVU	*-**	Aldose reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03224g10009.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf01866g01033.1	sp|Q9SHK2|PPR17_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf12205g03015.1	emb|CDY17236.1|	***-	BnaA05g09520D [Brassica napus]	IPR007608 (Senescence regulator S40)	
Niben101Scf02395g01006.1	sp|C1A6Q8|RL2_GEMAT	--*-	50S ribosomal protein L2	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf02949g02002.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf13798g00005.1	sp|P17859|AMYA_VIGMU	****	Alpha-amylase	IPR015902 (Glycoside hydrolase, family 13)	GO:0003824 (catalytic activity), GO:0004556 (alpha-amylase activity), GO:0005509 (calcium ion binding), GO:0005975 (carbohydrate metabolic process), GO:0043169 (cation binding)
Niben101Scf02482g01015.1	sp|O48882|ACCO2_MALDO	***-	1-aminocyclopropane-1-carboxylate oxidase 2	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00755g00010.1	ref|NP_194330.1|	****	RNA-binding KH domain-containing protein PEPPER [Arabidopsis thaliana] emb|CAB39665.1| putative nucleic acid binding protein [Arabidopsis thaliana] emb|CAB79455.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAL07137.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAM20510.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAM45112.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AEE85142.1| RNA-binding KH domain-containing protein PEPPER [Arabidopsis thaliana]	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf00868g01001.1	sp|Q6RZZ9|KIF13_DICDI	--*-	Kinesin-related protein 13		
Niben101Scf01739g07005.1	sp|O57429|UBP2_CHICK	****	Ubiquitin carboxyl-terminal hydrolase 2	IPR001607 (Zinc finger, UBP-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0008270 (zinc ion binding), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf20209g00007.1	sp|Q9Y6U7|RN215_HUMAN	*-*-	RING finger protein 215	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02602g01017.1	ref|WP_026734229.1|	****	RNA-binding protein [Fischerella sp. PCC 9605]	IPR017506 (Photosystem II S4)	GO:0003723 (RNA binding)
Niben101Scf04495g00028.1	gb|KEH28241.1|	*-*-	GASA/GAST/Snakin [Medicago truncatula]		
Niben101Scf09071g00025.1	AT4G34980.1	*-*-	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf00046g03001.1	AT5G14470.1	****	GHMP kinase family protein LENGTH=366	IPR006206 (Mevalonate/galactokinase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf01241g06001.1	AT1G14590.1	***-	Nucleotide-diphospho-sugar transferase family protein LENGTH=386	IPR005069 (Nucleotide-diphospho-sugar transferase)	
Niben101Scf03129g07006.1	gb|KEH24395.1|	*-*-	epoxide hydrolase [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00304g07022.1	sp|P56912|NUOF1_RHIME	****	NADH-quinone oxidoreductase subunit F 1	IPR011538 (NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain), IPR019554 (Soluble ligand binding domain), IPR019575 (NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0010181 (FMN binding), GO:0051539 (4 iron, 4 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03662g00002.1			Unknown protein		
Niben101Scf05030g05010.1			Unknown protein		
Niben101Scf27183g00011.1	sp|P27061|PPA1_SOLLC	****	Acid phosphatase 1	IPR005519 (Acid phosphatase (Class B)), IPR023214 (HAD-like domain)	GO:0003993 (acid phosphatase activity)
Niben101Scf13703g01006.1	sp|P17066|HSP76_HUMAN	***-	Heat shock 70 kDa protein 6	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain)	
Niben101Scf00646g02007.1	AT4G08510.1	***-	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=551		
Niben101Scf03295g04001.1			Unknown protein		
Niben101Scf01670g05003.1	AT4G35440.2	*-**	chloride channel E LENGTH=749	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00360g00006.1	ref|WP_015171905.1|	****	deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Geitlerinema sp. PCC 7407] ref|YP_007109391.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Geitlerinema sp. PCC 7407] gb|AFY66339.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific) [Geitlerinema sp. PCC 7407]	IPR002081 (Cryptochrome/DNA photolyase, class 1)	GO:0003913 (DNA photolyase activity), GO:0006281 (DNA repair)
Niben101Scf07365g01022.1	sp|Q6FRB7|IPYR_CANGA	****	Inorganic pyrophosphatase	IPR008162 (Inorganic pyrophosphatase)	GO:0000287 (magnesium ion binding), GO:0004427 (inorganic diphosphatase activity), GO:0005737 (cytoplasm), GO:0006796 (phosphate-containing compound metabolic process)
Niben101Scf06236g03019.1	AT3G05840.2	****	Protein kinase superfamily protein LENGTH=409	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10887g01009.1	sp|Q9S7F3|BEH1_ARATH	*-*-	BES1/BZR1 homolog protein 1	IPR008540 (BZR1, transcriptional repressor)	
Niben101Scf02509g08009.1	sp|Q99PK0|SYF1_RAT	***-	Pre-mRNA-splicing factor SYF1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Scf00875g05010.1	sp|Q9FJH8|NRT24_ARATH	***-	High affinity nitrate transporter 2.4	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf00872g01002.1			Unknown protein		
Niben101Scf01232g00010.1	AT4G00340.1	****	receptor-like protein kinase 4 LENGTH=818	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf05035g04014.1	sp|Q9FIX3|PP407_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02062g09008.1	sp|B2FM90|ZUPT_STRMK	--*-	Zinc transporter ZupT		
Niben101Scf04078g02006.1	AT1G69960.1	***-	serine/threonine protein phosphatase 2A LENGTH=307	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf03952g02012.1	sp|Q93ZR6|WSD1_ARATH	****	O-acyltransferase WSD1	IPR004255 (O-acyltransferase, WSD1, N-terminal), IPR009721 (O-acyltransferase, WSD1, C-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity), GO:0045017 (glycerolipid biosynthetic process)
Niben101Scf05669g02013.1	sp|Q9SGQ6|PP126_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06081g02002.1	sp|Q9SWB4|PARP3_SOYBN	***-	Poly [ADP-ribose] polymerase 3	IPR004102 (Poly(ADP-ribose) polymerase, regulatory domain), IPR008893 (WGR domain), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain)	GO:0003950 (NAD+ ADP-ribosyltransferase activity), GO:0006471 (protein ADP-ribosylation)
Niben101Scf01385g01014.1	AT2G26540.1	*-**	uroporphyrinogen-III synthase family protein LENGTH=321	IPR003754 (Tetrapyrrole biosynthesis, uroporphyrinogen III synthase)	GO:0004852 (uroporphyrinogen-III synthase activity), GO:0033014 (tetrapyrrole biosynthetic process)
Niben101Scf24496g01001.1	sp|Q9C519|WRKY6_ARATH	*-**	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07465g02001.1	sp|Q2HJF1|RM53_BOVIN	--*-	39S ribosomal protein L53, mitochondrial	IPR012336 (Thioredoxin-like fold)	
Niben101Scf04944g04001.1	emb|CDX80033.1|	*-*-	BnaA05g01230D [Brassica napus]		
Niben101Scf32698g00004.1	AT1G10210.1	****	mitogen-activated protein kinase 1 LENGTH=370	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07137g01012.1	sp|Q9SV43|PLP7_ARATH	***-	Patatin-like protein 7	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf17635g01011.1	gb|ABA97681.2|	*-*-	retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]		
Niben101Scf01015g00009.1	sp|C1D186|TATA_DEIDV	--**	Sec-independent protein translocase protein TatA	IPR003369 (Sec-independent protein translocase protein TatA/B/E), IPR003998 (Twin-arginine translocation protein TatB-like)	GO:0005886 (plasma membrane), GO:0008565 (protein transporter activity), GO:0009306 (protein secretion), GO:0015031 (protein transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf02854g08004.1	sp|A9HRT9|NUOD_GLUDA	*-**	NADH-quinone oxidoreductase subunit D	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily), IPR029014 (NiFe hydrogenase-like)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02755g02002.1	emb|CDY39912.1|	***-	BnaA09g14940D [Brassica napus]		
Niben101Scf20176g00008.1	AT3G51620.2	***-	PAP/OAS1 substrate-binding domain superfamily LENGTH=829		
Niben101Scf00018g01001.1			Unknown protein	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf07402g02011.1	sp|Q9ZPS7|TMN3_ARATH	***-	Transmembrane 9 superfamily member 3	IPR004240 (Nonaspanin (TM9SF)), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane)
Niben101Scf00324g02027.1	sp|Q9SF78|GDL29_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf02536g00004.1	sp|Q33C30|NDHK_NICTO	--*-	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic		
Niben101Scf03814g00005.1	sp|A0KHV1|RIBB_AERHH	--**	3,4-dihydroxy-2-butanone 4-phosphate synthase	IPR000422 (3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB), IPR017945 (DHBP synthase RibB-like alpha/beta domain)	GO:0008686 (3,4-dihydroxy-2-butanone-4-phosphate synthase activity), GO:0009231 (riboflavin biosynthetic process)
Niben101Scf08293g00013.1	sp|P27061|PPA1_SOLLC	****	Acid phosphatase 1	IPR005519 (Acid phosphatase (Class B)), IPR023214 (HAD-like domain)	GO:0003993 (acid phosphatase activity)
Niben101Scf10918g00010.1	AT3G23380.1	*-*-	ROP-interactive CRIB motif-containing protein 5 LENGTH=193	IPR000095 (CRIB domain)	
Niben101Scf06025g02026.1	AT3G02740.1	*-*-	Eukaryotic aspartyl protease family protein LENGTH=488	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf07165g01008.1	ref|XP_003630569.1|	***-	Mitochondrial phosphate carrier protein [Medicago truncatula]	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf12394g01002.1	sp|P86809|NLTP2_APIGA	***-	Non-specific lipid-transfer protein 2	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02915g05001.1	sp|P60374|RFCS_NANEQ	--*-	Replication factor C small subunit	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf08012g00002.1	sp|P49574|CLPC_ODOSI	*-**	ATP-dependent Clp protease ATP-binding subunit clpA homolog	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf05839g00004.1	AT5G10240.1	*-*-	asparagine synthetase 3 LENGTH=578		
Niben101Scf02090g07010.1	sp|A7YY55|HACD3_BOVIN	*-*-	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	IPR008978 (HSP20-like chaperone)	
Niben101Scf05610g02009.1	sp|Q9FGY4|FB341_ARATH	*-*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf05767g01007.1	sp|B9DMD1|RF1_STACT	--*-	Peptide chain release factor 1		
Niben101Scf02060g08005.1	ref|XP_003603139.1|	*-**	Far upstream element-binding protein [Medicago truncatula] gb|AES73390.1| RNA-binding KH domain protein [Medicago truncatula]	IPR004088 (K Homology domain, type 1)	GO:0003723 (RNA binding)
Niben101Scf09223g00005.1	gb|KEH35505.1|	*-*-	calcium-dependent lipid-binding (CaLB domain) family protein, putative [Medicago truncatula]		
Niben101Scf00959g00019.1	sp|Q9FHH5|GDU3_ARATH	-**-	Protein GLUTAMINE DUMPER 3		
Niben101Scf00170g04003.1	sp|Q7M443|CHIT2_TULBA	***-	Chitinase 2	IPR000677 (2S globulin), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09659g03002.1	AT3G10250.1	*-*-	Plant protein 1589 of unknown function LENGTH=324	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf02537g02033.1	sp|P59169|H33_ARATH	***-	Histone H3.3	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf08711g00021.1	sp|Q8RX88|FACE1_ARATH	****	CAAX prenyl protease 1 homolog	IPR001915 (Peptidase M48)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0008233 (peptidase activity), GO:0016020 (membrane), GO:0071586 (CAAX-box protein processing)
Niben101Scf01941g00023.1	AT5G53750.1	***-	CBS domain-containing protein LENGTH=408	IPR000644 (CBS domain)	
Niben101Scf05077g00005.1	AT1G76640.1	****	Calcium-binding EF-hand family protein LENGTH=159	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf07500g00009.1	sp|O23081|CRK41_ARATH	*-**	Cysteine-rich receptor-like protein kinase 41	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11234g00007.1	sp|O24146|4CL2_TOBAC	*-*-	4-coumarate--CoA ligase 2	IPR025110 (AMP-binding enzyme C-terminal domain)	
Niben101Scf02544g01012.1	gb|ABZ02881.1|	*-*-	phytoalexin-deficient 4 protein, partial [Arabidopsis thaliana]	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf04406g00010.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02344g03002.1	sp|Q6AYZ1|TBA1C_RAT	*-*-	Tubulin alpha-1C chain	IPR000217 (Tubulin)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf12686g01017.1	AT2G15900.1	***-	Phox-associated domain;Phox-like;Sorting nexin, C-terminal LENGTH=994	IPR001683 (Phox homologous domain), IPR013937 (Sorting nexin, C-terminal)	GO:0035091 (phosphatidylinositol binding)
Niben101Scf03959g00002.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]	IPR002182 (NB-ARC), IPR021929 (Late blight resistance protein R1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Ctg03154g00002.1	ref|NP_001063242.1|	***-	product [Oryza sativa Japonica Group]	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf13186g03007.1	sp|P81391|MYB05_ANTMA	***-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08211g03007.1	sp|O96552|CHMP1_DICDI	***-	Charged multivesicular body protein 1	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf03185g01010.1	gb|KEH19300.1|	*-*-	DUF223 domain protein [Medicago truncatula]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf01101g05008.1	sp|O04209|CLC2_ARATH	****	Clathrin light chain 2	IPR000996 (Clathrin light chain)	GO:0005198 (structural molecule activity), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030130 (clathrin coat of trans-Golgi network vesicle), GO:0030132 (clathrin coat of coated pit)
Niben101Scf00491g02005.1	ref|NP_198602.1|	--**	heavy metal transport/detoxification domain-containing protein [Arabidopsis thaliana] gb|AAY78844.1| copper-binding family protein [Arabidopsis thaliana] gb|AED94242.1| heavy metal transport/detoxification domain-containing protein [Arabidopsis thaliana]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf10559g01033.1	AT1G64530.1	*-*-	Plant regulator RWP-RK family protein LENGTH=841	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain)	GO:0005515 (protein binding)
Niben101Scf02531g01025.1	gb|ABA99683.1|	--**	GRF zinc finger family protein [Oryza sativa Japonica Group]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf01584g00016.1	ref|XP_007020150.1|	*-*-	Domain of Uncharacterized protein function, putative [Theobroma cacao] gb|EOY17375.1| Domain of Uncharacterized protein function, putative [Theobroma cacao]	IPR010369 (Protein of unknown function DUF966)	
Niben101Scf02911g03015.1	sp|Q9SDX3|UGPA_MUSAC	****	UTP--glucose-1-phosphate uridylyltransferase	IPR002618 (UTP--glucose-1-phosphate uridylyltransferase family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0003983 (UTP:glucose-1-phosphate uridylyltransferase activity), GO:0006011 (UDP-glucose metabolic process), GO:0008152 (metabolic process), GO:0070569 (uridylyltransferase activity)
Niben101Scf02820g00001.1	sp|Q9Y2L5|TPPC8_HUMAN	*-*-	Trafficking protein particle complex subunit 8	IPR011990 (Tetratricopeptide-like helical domain), IPR024420 (TRAPP III complex, Trs85)	GO:0005515 (protein binding)
Niben101Scf03986g02004.1	AT4G01575.1	*-*-	serine protease inhibitor, Kazal-type family protein LENGTH=144		
Niben101Scf15170g00001.1	sp|Q9ZU11|ATB15_ARATH	--*-	Homeobox-leucine zipper protein ATHB-15		
Niben101Scf02289g07003.1			Unknown protein		
Niben101Scf00034g04016.1	emb|CDY44055.1|	***-	BnaA08g15510D [Brassica napus]		
Niben101Scf00199g01001.1	sp|Q0WRX3|SCP40_ARATH	****	Serine carboxypeptidase-like 40	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf08137g00007.1	sp|Q8BJU0|SGTA_MOUSE	--*-	Small glutamine-rich tetratricopeptide repeat-containing protein alpha	IPR011990 (Tetratricopeptide-like helical domain), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf14479g01007.1	AT5G66230.1	***-	Chalcone-flavanone isomerase family protein LENGTH=329		
Niben101Scf00127g04003.1	ref|XP_003622794.1|	--*-	ATP-dependent DNA helicase PIF1 [Medicago truncatula]		
Niben101Scf03453g02006.1			Unknown protein		
Niben101Scf06157g01004.1	sp|Q8CCF0|PRP31_MOUSE	***-	U4/U6 small nuclear ribonucleoprotein Prp31	IPR002687 (Nop domain), IPR012976 (NOSIC), IPR019175 (Prp31 C-terminal), IPR027105 (U4/U6 small nuclear ribonucleoprotein Prp31)	GO:0000244 (spliceosomal tri-snRNP complex assembly), GO:0000398 (mRNA splicing, via spliceosome), GO:0046540 (U4/U6 x U5 tri-snRNP complex)
Niben101Scf04881g02005.1	gb|KEH31356.1|	****	S-adenosyl-L-methionine-dependent methyltransferase [Medicago truncatula]	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf07339g02022.1	AT4G31170.1	*-**	Protein kinase superfamily protein LENGTH=412	IPR002912 (ACT domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04697g03001.1	ref|NP_001061300.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf00466g03020.1	gb|ADV59380.1|	***-	GAGA-binding transcriptional activator [Helianthus annuus]	IPR010409 (GAGA-binding transcriptional activator)	
Niben101Scf00571g00001.1	AT1G03610.1	***-	Protein of unknown function (DUF789) LENGTH=308	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf04259g01024.1	gb|ABF97907.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf08785g02010.1	sp|O81481|IF4E1_MAIZE	****	Eukaryotic translation initiation factor 4E-1	IPR001040 (Translation Initiation factor eIF- 4e), IPR023398 (Translation Initiation factor eIF- 4e-like  domain)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0006413 (translational initiation)
Niben101Scf03862g02002.1	AT5G57840.1	****	HXXXD-type acyl-transferase family protein LENGTH=443	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04526g02002.1	sp|Q01417|PM1_SOYBN	--*-	18 kDa seed maturation protein	IPR005513 (Late embryogenesis abundant protein, LEA-25/LEA-D113)	GO:0009790 (embryo development)
Niben101Scf04702g04001.1	AT2G45560.1	*-*-	cytochrome P450, family 76, subfamily C, polypeptide 1 LENGTH=512	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08341g08001.1	ref|XP_002516585.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF45926.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08533g01004.1	sp|Q9SR66|DML2_ARATH	*-*-	DEMETER-like protein 2	IPR028925 (Demeter, RRM-fold domain)	
Niben101Scf03488g07002.1	sp|Q27RY7|YCF2_SOLTU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf00201g01020.1	sp|Q9HHK5|TF2B3_HALSA	*-**	Transcription initiation factor IIB 3	IPR000812 (Transcription factor TFIIB), IPR011665 (Brf1, TBP-binding domain)	GO:0000126 (transcription factor TFIIIB complex), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0006384 (transcription initiation from RNA polymerase III promoter), GO:0008270 (zinc ion binding), GO:0017025 (TBP-class protein binding)
Niben101Scf10889g00005.1	AT2G21470.2	****	SUMO-activating enzyme 2 LENGTH=700	IPR016040 (NAD(P)-binding domain), IPR023280 (Ubiquitin-like 1 activating enzyme, catalytic cysteine domain), IPR028077 (Ubiquitin/SUMO-activating enzyme ubiquitin-like domain)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0006464 (cellular protein modification process), GO:0008641 (small protein activating enzyme activity)
Niben101Scf07413g01001.1	AT1G07310.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=352	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf06945g00014.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00505g06003.1	sp|Q9FJJ4|FB298_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf02665g14005.1	sp|O95696|BRD1_HUMAN	*-*-	Bromodomain-containing protein 1	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf01858g01031.1	ref|WP_022678485.1|	--*-	DNA gyrase subunit A [Novosphingobium sp. B-7]		
Niben101Scf02902g03008.1	AT1G76850.1	****	exocyst complex component sec5 LENGTH=1090	IPR016159 (Cullin repeat-like-containing domain), IPR029175 (Exocyst complex component Sec5)	GO:0000145 (exocyst), GO:0006893 (Golgi to plasma membrane transport)
Niben101Scf10737g00013.1	gb|KEH39347.1|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00683g03019.1	sp|P73456|FTSZ_SYNY3	***-	Cell division protein FtsZ	IPR000158 (Cell division protein FtsZ)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005737 (cytoplasm), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf13680g03001.1	sp|Q03461|NLTP2_TOBAC	****	Non-specific lipid-transfer protein 2	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf13231g01014.1	sp|Q8RWM3|MED27_ARATH	*-*-	Mediator of RNA polymerase II transcription subunit 27		
Niben101Scf01972g04006.1			Unknown protein		
Niben101Scf02869g03007.1	sp|Q8W4I4|POT6_ARATH	*-**	Potassium transporter 6	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf05183g00002.1	sp|A8AJF8|RIHA_CITK8	***-	Pyrimidine-specific ribonucleoside hydrolase RihA	IPR001910 (Inosine/uridine-preferring nucleoside hydrolase domain), IPR023186 (Inosine/uridine-preferring nucleoside hydrolase)	
Niben101Scf04803g00005.1	ref|NP_001051816.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf01987g00016.1	AT2G05250.1	*-*-	DNAJ heat shock N-terminal domain-containing protein LENGTH=706	IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf18384g00013.1	AT5G05690.1	***-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08156g06004.1	AT1G76170.1	****	2-thiocytidine tRNA biosynthesis protein, TtcA LENGTH=332	IPR012089 (2-thiocytidine tRNA biosynthesis protein, TtcA)	GO:0008033 (tRNA processing)
Niben101Scf13912g00008.1	sp|Q6TN15|MX_SINCH	*-**	Interferon-induced GTP-binding protein Mx	IPR001401 (Dynamin, GTPase domain), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf03541g00023.1	sp|Q9SMZ2|PP347_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf08833g01001.1	emb|CDY45481.1|	*-*-	BnaCnng12400D [Brassica napus]		
Niben101Scf13429g04020.1	sp|Q6ZMR3|LDH6A_HUMAN	*-**	L-lactate dehydrogenase A-like 6A	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0004459 (L-lactate dehydrogenase activity), GO:0005975 (carbohydrate metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf05955g03003.1	AT3G62040.1	****	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=249	IPR006439 (HAD hydrolase, subfamily IA), IPR010237 (Pyrimidine 5-nucleotidase), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01494g09003.1	sp|B7J7X8|DNAJ_ACIF2	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf00236g01012.1			Unknown protein		
Niben101Scf00332g08007.1	sp|Q9SH26|PP102_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02583g06016.1	AT5G66200.1	***-	armadillo repeat only 2 LENGTH=651	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf11727g00013.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02513g08003.1	sp|P13869|CB12_PETHY	***-	Chlorophyll a-b binding protein, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf05188g00002.1	AT2G36430.1	***-	Plant protein of unknown function (DUF247) LENGTH=448	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Ctg15408g00005.1	AT5G54930.1	*-*-	AT hook motif-containing protein LENGTH=286		
Niben101Scf03708g02006.1	sp|O65570|VILI4_ARATH	*-*-	Villin-4	IPR003128 (Villin headpiece), IPR007122 (Villin/Gelsolin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0007010 (cytoskeleton organization), GO:0051015 (actin filament binding), GO:0051017 (actin filament bundle assembly)
Niben101Scf02235g03001.1	sp|B1YTP7|NUOK_BURA4	--*-	NADH-quinone oxidoreductase subunit K		
Niben101Scf02246g03011.1	emb|CDY50332.1|	***-	BnaA10g13650D [Brassica napus]	IPR012862 (Protein of unknown function DUF1635)	
Niben101Scf00324g02024.1	AT4G10955.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=350	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf08590g00003.1	sp|P52409|E13B_WHEAT	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02751g04008.1	ref|NP_001052354.1|	***-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf01862g00003.1	sp|Q54IV7|RFT1_DICDI	***-	Protein RFT1 homolog	IPR007594 (RFT1)	GO:0005319 (lipid transporter activity), GO:0006869 (lipid transport), GO:0016021 (integral component of membrane)
Niben101Scf05557g00001.1	sp|Q9FUR2|IP5P2_ARATH	*-**	Type I inositol 1,4,5-trisphosphate 5-phosphatase 2	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf08413g00005.1	AT2G01610.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=222	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf15349g00008.1	sp|Q9EQC4|ELOV4_MOUSE	*-*-	Elongation of very long chain fatty acids protein 4	IPR002076 (ELO family)	GO:0016021 (integral component of membrane)
Niben101Scf09513g00024.1	AT3G18380.2	***-	sequence-specific DNA binding transcription factors;sequence-specific DNA binding LENGTH=349		
Niben101Scf04793g00005.1	sp|Q9FG35|TBR_ARATH	*-*-	Protein trichome birefringence	IPR026057 (PC-Esterase)	
Niben101Scf02059g00010.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03834g03010.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00592g09011.1	AT5G11850.1	*-**	Protein kinase superfamily protein LENGTH=880	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11182g02007.1	ref|XP_003614638.1|	***-	Monoglyceride lipase [Medicago truncatula] gb|AES97596.1| alpha/beta-hydrolase superfamily protein [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf13429g03010.1	sp|Q9SIT5|CHX15_ARATH	****	Cation/H(+) antiporter 15	IPR006153 (Cation/H+ exchanger), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf04362g07008.1	sp|Q84LF1|5EAS1_NICAT	*-*-	5-epi-aristolochene synthase 1		
Niben101Scf03026g05001.1	emb|CCA25556.1|	*-*-	phosphatidylinositol kinase putative [Albugo laibachii Nc14]	IPR009060 (UBA-like), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote)	GO:0005515 (protein binding)
Niben101Scf08812g01007.1	sp|Q54C25|GPN1_DICDI	****	GPN-loop GTPase 1	IPR004130 (GPN-loop GTPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity)
Niben101Scf02406g04026.1	sp|Q7SXW3|LRC40_DANRE	*-*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf05369g01004.1	sp|Q8L4D8|IQD31_ARATH	***-	Protein IQ-DOMAIN 31	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf11150g02007.1	AT2G07739.1	*-*-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf00085g04001.1	sp|O82804|ELF3_ARATH	***-	Protein EARLY FLOWERING 3		
Niben101Scf01236g00013.1	AT3G17510.1	****	CBL-interacting protein kinase 1 LENGTH=444	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07825g06007.1			Unknown protein		
Niben101Scf03036g03023.1	sp|Q9MA41|CTL1_ARATH	****	Chitinase-like protein 1	IPR000726 (Glycoside hydrolase, family 19, catalytic), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0006032 (chitin catabolic process), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf17140g00001.1	sp|Q94KU1|6PGD1_SPIOL	****	6-phosphogluconate dehydrogenase, decarboxylating 1	IPR006113 (6-phosphogluconate dehydrogenase, decarboxylating), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050661 (NADP binding), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07019g02024.1			Unknown protein		
Niben101Scf09331g00006.1	AT2G33700.1	****	Protein phosphatase 2C family protein LENGTH=380	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf10305g01022.1	ref|NP_181670.2|	-**-	Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] gb|AEC09968.1| Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]		
Niben101Scf07184g02002.1			Unknown protein		
Niben101Scf00654g03010.1	ref|NP_001105775.1|	*-*-	alkaline alpha galactosidase 3 [Zea mays] alkaline alpha galactosidase 3 [Zea mays]	IPR008811 (Glycosyl hydrolases 36)	
Niben101Scf04384g05019.1	sp|Q13435|SF3B2_HUMAN	*-*-	Splicing factor 3B subunit 2	IPR006568 (PSP, proline-rich), IPR007180 (Domain of unknown function DUF382)	GO:0005634 (nucleus)
Niben101Scf03628g00017.1	gb|ABA95265.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf07109g04008.1	AT5G02880.1	*-*-	ubiquitin-protein ligase 4 LENGTH=1502	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf03287g01004.1	sp|Q6YW46|EF1G2_ORYSJ	*-*-	Elongation factor 1-gamma 2		
Niben101Scf08167g05003.1	gb|ABA96375.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR008590 (Protein of unknown function DUF872, transmembrane)	
Niben101Scf05898g00002.1			Unknown protein		
Niben101Scf12813g00006.1	gb|AES73351.2|	***-	carbohydrate esterase plant-like protein [Medicago truncatula]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf08341g05016.1	sp|Q4V7B8|RNF44_RAT	*-*-	RING finger protein 44	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02044g13013.1	AT3G12955.1	***-	SAUR-like auxin-responsive protein family LENGTH=139	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00887g04016.1	sp|Q5SS80|DHR13_MOUSE	****	Dehydrogenase/reductase SDR family member 13	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf09825g01007.1			Unknown protein		
Niben101Scf07182g01008.1	dbj|BAD33450.1|	****	GTP-binding protein-like [Oryza sativa Japonica Group] dbj|BAD33726.1| GTP-binding protein-like [Oryza sativa Japonica Group] dbj|BAH01464.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEC84452.1| hypothetical protein OsI_31074 [Oryza sativa Indica Group]	IPR006073 (GTP binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf02074g06006.1	emb|CAE04643.1|	--*-	OSJNBa0028I23.25 [Oryza sativa Japonica Group]		
Niben101Scf01025g07004.1	emb|CDY62568.1|	*-*-	BnaCnng40410D [Brassica napus]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf09367g00008.1	sp|O81016|AB32G_ARATH	*-*-	ABC transporter G family member 32	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf05989g02001.1			Unknown protein		
Niben101Scf02971g01014.1	sp|O64759|CAAT5_ARATH	****	Cationic amino acid transporter 5	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf01521g08013.1	emb|CDY45142.1|	*-*-	BnaA09g14500D [Brassica napus]	IPR007679 (Protein of unknown function DUF569), IPR008999 (Actin cross-linking)	
Niben101Scf01811g01001.1	sp|Q9SHI7|UBC34_ARATH	--*-	Ubiquitin-conjugating enzyme E2 34		
Niben101Scf02375g04008.1	sp|G4MTF8|XYN2_MAGO7	--*-	Endo-1,4-beta-xylanase 2	IPR001000 (Glycoside hydrolase, family 10), IPR008979 (Galactose-binding domain-like), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf04292g05007.1	sp|Q80Z70|SE1L1_RAT	--*-	Protein sel-1 homolog 1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05202g01004.1	emb|CDY47281.1|	*-*-	BnaA10g03650D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00114g00011.1	AT1G48480.1	****	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00087g01004.1	AT2G24395.1	***-	chaperone protein dnaJ-related LENGTH=132		
Niben101Scf02927g01007.1	sp|Q9FG35|TBR_ARATH	*-*-	Protein trichome birefringence	IPR026057 (PC-Esterase)	
Niben101Scf25547g00010.1	tpg|DAA38869.1|	--*-	TPA: hypothetical protein ZEAMMB73_975829 [Zea mays]		
Niben101Scf02145g03007.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07260g01017.1	sp|Q9Z0F6|RAD9A_MOUSE	*-**	Cell cycle checkpoint control protein RAD9A	IPR007268 (Rad9/Ddc1)	GO:0000075 (cell cycle checkpoint), GO:0000077 (DNA damage checkpoint), GO:0006281 (DNA repair), GO:0030896 (checkpoint clamp complex)
Niben101Scf00457g10009.1	AT2G39210.1	***-	Major facilitator superfamily protein LENGTH=601	IPR010658 (Nodulin-like), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02459g10007.1	AT4G10030.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=380		
Niben101Scf11621g01006.1	AT4G39140.1	***-	RING/U-box superfamily protein LENGTH=429	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03924g00005.1	sp|F4I241|BUB33_ARATH	***-	Mitotic checkpoint protein BUB3.3	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05290g00013.1	sp|B2GKG9|MIAA_KOCRD	*-**	tRNA dimethylallyltransferase	IPR018022 (tRNA delta(2)-isopentenylpyrophosphate transferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf05409g00001.1	emb|CDX94662.1|	***-	BnaC07g09960D [Brassica napus]	IPR009060 (UBA-like), IPR009719 (Protein of unknown function DUF1296, plant)	GO:0005515 (protein binding)
Niben101Scf02902g00006.1	sp|Q9FLS0|FB253_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf00061g00002.1	sp|Q6EU39|MADS6_ORYSJ	****	MADS-box transcription factor 6	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf13460g00009.1	AT1G71810.1	***-	Protein kinase superfamily protein LENGTH=692		
Niben101Scf08157g02016.1	emb|CAH67653.1|	*-*-	[Oryza sativa Indica Group]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf01548g00006.1	sp|O23310|NFYB3_ARATH	****	Nuclear transcription factor Y subunit B-3	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf06751g00002.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01305g04008.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf07797g03007.1	sp|Q8A128|CLPX_BACTN	--**	ATP-dependent Clp protease ATP-binding subunit ClpX	IPR000641 (CbxX/CfqX), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf06998g01006.1	sp|P93005|PP181_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05709g00001.1	sp|P51153|RAB13_HUMAN	***-	Ras-related protein Rab-13	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02543g02013.1	AT5G42570.1	****	B-cell receptor-associated 31-like LENGTH=218	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf01602g00005.1	sp|O65874|MTF1_PEA	****	MADS-box transcription factor 1	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf10919g01030.1	AT2G16530.1	*-*-	3-oxo-5-alpha-steroid 4-dehydrogenase family protein LENGTH=343	IPR001104 (3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal)	GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
Niben101Scf03039g01019.1	emb|CDX81787.1|	***-	BnaC08g38140D [Brassica napus]		
Niben101Scf06078g03003.1	sp|Q2TBG8|UCHL3_BOVIN	****	Ubiquitin carboxyl-terminal hydrolase isozyme L3	IPR001578 (Peptidase C12, ubiquitin carboxyl-terminal hydrolase)	GO:0004843 (ubiquitin-specific protease activity), GO:0005622 (intracellular), GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf03722g01004.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01956g10012.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05183g04013.1	AT1G78940.2	*-*-	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain LENGTH=754	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf15694g00007.1	emb|CDX78193.1|	***-	BnaA09g33880D [Brassica napus]		
Niben101Scf01481g03011.1	sp|Q84K00|NAC78_ARATH	*-*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01328g02009.1	AT1G29820.1	*-*-	Magnesium transporter CorA-like family protein LENGTH=540		
Niben101Scf38184g00005.1	sp|Q93ZQ5|SPXM3_ARATH	****	SPX domain-containing membrane protein	IPR004331 (SPX, N-terminal), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf05034g03003.1	sp|Q05772|A9_BRANA	***-	Tapetum-specific protein A9	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf05552g09003.1	AT5G62150.1	***-	peptidoglycan-binding LysM domain-containing protein LENGTH=102	IPR018392 (LysM domain)	
Niben101Scf02190g03014.1	sp|Q9M3V8|RS6_ASPOF	***-	40S ribosomal protein S6	IPR001377 (Ribosomal protein S6e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01146g04002.1	sp|O65162|CAMT_MESCR	****	Caffeoyl-CoA O-methyltransferase	IPR002935 (O-methyltransferase, family 3), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008171 (O-methyltransferase activity)
Niben101Scf01993g08016.1	AT1G10940.2	*-**	Protein kinase superfamily protein LENGTH=371	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf32954g00001.1	AT1G27180.1	*-*-	disease resistance protein (TIR-NBS-LRR class), putative LENGTH=1556	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf06753g00007.1			Unknown protein		
Niben101Scf08194g02021.1	ref|XP_003614194.1|	****	Salicylic acid methyl transferase-like protein [Medicago truncatula] gb|AES97152.1| salicylic acid carboxyl methyltransferase [Medicago truncatula]	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf04623g02009.1	sp|Q8LEA8|EID1_ARATH	***-	Phytochrome A-associated F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf06840g00012.1	sp|Q8DMM5|RL16_THEEB	***-	50S ribosomal protein L16	IPR000114 (Ribosomal protein L16), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf04474g02001.1	sp|Q7Y1B6|GAI_SOLLC	***-	DELLA protein GAI	IPR005202 (Transcription factor GRAS), IPR021914 (Transcriptional factor DELLA, N-terminal), IPR030006 (Transcriptional factor DELLA)	
Niben101Scf04123g01031.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00170g05014.1	sp|Q9LVG9|Y5600_ARATH	***-	BTB/POZ domain-containing protein	IPR000210 (BTB/POZ-like)	GO:0005515 (protein binding)
Niben101Scf10465g02005.1	sp|Q8R0T2|ZN768_MOUSE	--*-	Zinc finger protein 768	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00914g00002.1	AT5G35320.1	***-	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). LENGTH=225		
Niben101Scf00646g09005.1	sp|Q14498|RBM39_HUMAN	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04418g11001.1	sp|P42814|RNS2_ARATH	****	Ribonuclease 2	IPR001568 (Ribonuclease T2-like)	GO:0003723 (RNA binding), GO:0033897 (ribonuclease T2 activity)
Niben101Scf08613g01002.1			Unknown protein		
Niben101Scf10385g00005.1	AT3G03210.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 59 Blast hits to 59 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). LENGTH=368	IPR026057 (PC-Esterase)	
Niben101Scf08263g01017.1			Unknown protein		
Niben101Scf07007g03013.1	sp|Q9NS86|LANC2_HUMAN	*-*-	LanC-like protein 2	IPR007822 (Lanthionine synthetase C-like)	
Niben101Scf12308g00003.1	sp|P93194|RPK1_IPONI	--**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00571g10015.1	AT1G30910.1	***-	Molybdenum cofactor sulfurase family protein LENGTH=318	IPR005303 (MOSC, N-terminal beta barrel)	
Niben101Scf03873g00018.1	gb|AES90030.2|	****	B3 DNA-binding domain protein [Medicago truncatula]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf19230g01038.1			Unknown protein		
Niben101Scf06562g01018.1	AT4G10790.1	***-	UBX domain-containing protein LENGTH=480	IPR006577 (UAS), IPR012336 (Thioredoxin-like fold), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf03765g00002.1	sp|Q07060|ATP9_PETSP	*-**	ATP synthase subunit 9, mitochondrial	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf05566g02005.1	sp|Q9JJK2|LANC2_MOUSE	*-*-	LanC-like protein 2	IPR007822 (Lanthionine synthetase C-like)	
Niben101Scf00568g04014.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02606g02014.1	AT3G02750.3	*-*-	Protein phosphatase 2C family protein LENGTH=527	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf01552g03002.1	sp|Q58DM4|ALKB2_BOVIN	--*-	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2		
Niben101Scf02929g05085.1			Unknown protein		
Niben101Scf15227g00032.1			Unknown protein		
Niben101Scf18951g00007.1	AT3G25950.1	***-	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein LENGTH=251	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf04388g01005.1	sp|P14735|IDE_HUMAN	***-	Insulin-degrading enzyme	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0046872 (metal ion binding)
Niben101Scf03768g03009.1	AT1G18000.1	***-	Major facilitator superfamily protein LENGTH=459	IPR010291 (Ion channel regulatory protein, UNC-93), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf01731g04005.1	ref|NP_001047002.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf07172g01014.1	AT3G19200.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=143		
Niben101Scf06332g02007.1	sp|Q28BZ1|RBM8A_XENTR	*-**	RNA-binding protein 8A	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05034g02001.1	AT4G00750.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=633	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02074g02065.1			Unknown protein		
Niben101Scf03731g01007.1	ref|XP_007021290.1|	***-	U3 small nucleolar RNA-associated protein 14 B isoform 4 [Theobroma cacao] gb|EOY12815.1| U3 small nucleolar RNA-associated protein 14 B isoform 4 [Theobroma cacao]		
Niben101Scf04686g00006.1	sp|Q9XJ66|MAD22_ORYSJ	*-**	MADS-box transcription factor 22	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02694g03002.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04829g02001.1	sp|Q9ZSY8|IAA27_ARATH	***-	Auxin-responsive protein IAA27	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf08081g03009.1	sp|Q6DW73|DGDG2_LOTJA	***-	Digalactosyldiacylglycerol synthase 2, chloroplastic		
Niben101Scf00691g02025.1	sp|Q0BV49|CCMA_GRABC	****	Cytochrome c biogenesis ATP-binding export protein CcmA	IPR005895 (ABC transporter, haem export, CcmA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005215 (transporter activity), GO:0005524 (ATP binding), GO:0016887 (ATPase activity), GO:0017004 (cytochrome complex assembly), GO:0030288 (outer membrane-bounded periplasmic space)
Niben101Scf02497g05005.1	sp|Q6DW73|DGDG2_LOTJA	***-	Digalactosyldiacylglycerol synthase 2, chloroplastic		
Niben101Scf01205g04015.1	AT1G75620.1	***-	glyoxal oxidase-related protein LENGTH=547	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR014756 (Immunoglobulin E-set), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf04223g00007.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf00912g02003.1	AT3G10600.1	****	cationic amino acid transporter 7 LENGTH=584	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf01848g04008.1	ref|XP_002516088.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF46090.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02749g00010.1			Unknown protein		
Niben101Scf07231g07013.1	AT4G27480.1	*-**	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=421	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf10994g00007.1	sp|Q9C9V6|Y1790_ARATH	*-*-	BTB/POZ domain-containing protein	IPR027356 (NPH3 domain), IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0009958 (positive gravitropism)
Niben101Scf09025g02010.1	AT5G63280.1	*-*-	C2H2-like zinc finger protein LENGTH=271		
Niben101Scf00892g00002.1	gb|AES65140.2|	*-*-	VQ motif protein [Medicago truncatula]	IPR008889 (VQ)	
Niben101Scf23248g00017.1	gb|ABB83643.1|	--*-	PIF-like orf1 [Daucus carota]		
Niben101Scf06190g02009.1	sp|Q6CLR3|DED1_KLULA	****	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR001878 (Zinc finger, CCHC-type), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding)
Niben101Scf04812g01015.1	sp|P29375|KDM5A_HUMAN	*-*-	Lysine-specific demethylase 5A	IPR003347 (JmjC domain), IPR003349 (JmjN domain), IPR004198 (Zinc finger, C5HC2-type)	
Niben101Scf12017g01003.1	ref|XP_003620005.1|	-***	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00394g02002.1	ref|XP_003597012.1|	*-*-	TdcA1-ORF2 protein [Medicago truncatula]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf03278g04011.1	sp|Q9FNK5|FB285_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02736g02006.1	sp|Q60415|PEX19_CRIGR	*-*-	Peroxisomal biogenesis factor 19	IPR006708 (Pex19 protein)	GO:0005777 (peroxisome)
Niben101Scf05276g00003.1	sp|Q9C6M1|GDT14_ARATH	***-	GDT1-like protein 4	IPR001727 (Uncharacterised protein family UPF0016)	GO:0016020 (membrane)
Niben101Scf03679g03008.1	sp|Q31DM1|ATPE_THICR	****	ATP synthase epsilon chain	IPR001469 (ATPase, F1 complex, delta/epsilon subunit)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf03482g01010.1	sp|Q9FUT0|GSTU9_ARATH	***-	Glutathione S-transferase U9	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf00751g06003.1	sp|Q58DZ6|ZN143_XENTR	*-*-	Zinc finger protein 143	IPR003347 (JmjC domain), IPR003349 (JmjN domain), IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf05955g03046.1	sp|Q5FW14|CHMP7_XENTR	--*-	Charged multivesicular body protein 7		
Niben101Scf04234g02013.1	emb|CCD60785.1|	--**	family C48 unassigned peptidase (C48 family) [Schistosoma mansoni]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00262g05007.1	sp|O24473|IF2B_WHEAT	****	Eukaryotic translation initiation factor 2 subunit beta	IPR002735 (Translation initiation factor IF2/IF5)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf10881g00025.1	ref|XP_002534687.1|	*-*-	NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis] gb|EEF27701.1| NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis]		
Niben101Scf06233g01021.1	AT3G01015.1	***-	TPX2 (targeting protein for Xklp2) protein family LENGTH=488	IPR009675 (TPX2), IPR027329 (TPX2, C-terminal domain)	GO:0005819 (spindle), GO:0005874 (microtubule), GO:0007067 (mitotic nuclear division)
Niben101Scf01571g03004.1	AT4G21750.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=762	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008289 (lipid binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf18356g00016.1	sp|Q5PZ43|XIRP1_DANRE	--*-	Xin actin-binding repeat-containing protein 1		
Niben101Scf00485g00013.1	AT2G07771.2	****	Cytochrome C assembly protein LENGTH=256	IPR002541 (Cytochrome c assembly protein), IPR003557 (Cytochrome c-type biogenesis protein CcmC)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf03739g06015.1	sp|P23881|TCEA3_MOUSE	*-**	Transcription elongation factor A protein 3	IPR003618 (Transcription elongation factor S-II, central domain), IPR016492 (Transcription elongation factor, TFIIS-related), IPR017923 (Transcription factor IIS, N-terminal)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0008270 (zinc ion binding), GO:0032784 (regulation of DNA-templated transcription, elongation)
Niben101Scf04283g00013.1	sp|O23970|GPX1_HELAN	****	Glutathione peroxidase 1	IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029760 (Glutathione peroxidase conserved site)	GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process)
Niben101Scf02111g09001.1	sp|Q5SP90|PP4R3_DANRE	***-	Serine/threonine-protein phosphatase 4 regulatory subunit 3	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf03889g01006.1	ref|NP_001233978.1|	*-*-	extensin-like protein Dif54 precursor [Solanum lycopersicum] emb|CAA67814.1| extensin-like protein Dif54 [Solanum lycopersicum]		
Niben101Scf01830g01022.1	sp|Q9SU44|GRF8_ARATH	***-	Growth-regulating factor 8	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf00876g00006.1	sp|P55956|ASP3_CAEEL	****	Aspartic protease 3	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06211g02010.1			Unknown protein		
Niben101Scf07829g04012.1	AT1G74530.3	***-	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). LENGTH=314		
Niben101Scf10225g00011.1	sp|Q2MIC5|YCF2_SOLBU	*-*-	Protein Ycf2		
Niben101Scf04133g01003.1	sp|Q6R8G7|PHO13_ARATH	*-*-	Phosphate transporter PHO1 homolog 3	IPR004331 (SPX, N-terminal)	
Niben101Scf05487g01009.1	sp|P37218|H1_SOLLC	*-*-	Histone H1	IPR005819 (Histone H5)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf03694g08004.1	gb|KEH36884.1|	***-	F-box plant-like protein, putative [Medicago truncatula]	IPR027949 (Petal formation-expressed)	
Niben101Scf01383g02014.1	gb|EGI70303.1|	--*-	Sentrin-specific protease 1 [Acromyrmex echinatior]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf02249g02002.1	ref|NP_001063293.1|	*-*-	OsJ_29536 [Oryza sativa Japonica Group]		
Niben101Scf01305g04007.1	AT1G27000.1	***-	Protein of unknown function (DUF1664) LENGTH=304	IPR012458 (Protein of unknown function DUF1664)	
Niben101Scf06081g04004.1	gb|AIU49542.1|	***-	AT5G11810-like protein, partial [Solanum lycopersicum]		
Niben101Scf17044g01021.1			Unknown protein		
Niben101Scf01259g09006.1	emb|CDY33462.1|	***-	BnaA06g36110D [Brassica napus]	IPR006852 (Protein of unknown function DUF616)	
Niben101Scf18102g00002.1	sp|Q8LPR5|TCP4_ARATH	*-*-	Transcription factor TCP4	IPR005333 (Transcription factor, TCP)	
Niben101Scf14144g00025.1	sp|Q08435|PMA1_NICPL	*-**	Plasma membrane ATPase 1	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane)
Niben101Scf03289g04010.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03612g00008.1	AT1G50310.1	*-**	sugar transporter 9 LENGTH=517	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03463g02010.1	sp|O82485|OPT7_ARATH	*-*-	Oligopeptide transporter 7	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf06913g00001.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01453g00002.1			Unknown protein		
Niben101Scf08772g05003.1	AT5G40645.1	***-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=73	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf04036g04007.1	sp|Q2LUQ1|FTSH_SYNAS	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf07260g01016.1	AT3G05480.3	****	cell cycle checkpoint control protein family LENGTH=456	IPR007268 (Rad9/Ddc1)	GO:0000075 (cell cycle checkpoint), GO:0000077 (DNA damage checkpoint), GO:0006281 (DNA repair), GO:0030896 (checkpoint clamp complex)
Niben101Scf13411g02002.1	gb|KHF34555.1|	***-	BadF/BadG/BcrA/BcrD ATPase family protein [Paenibacillus sp. P1XP2]	IPR002731 (ATPase, BadF/BadG/BcrA/BcrD type)	
Niben101Scf14726g00007.1	sp|O80872|TBL45_ARATH	*-*-	Protein trichome birefringence-like 45	IPR026057 (PC-Esterase)	
Niben101Scf05692g01008.1	sp|A4RPM5|UBA4_MAGO7	****	Adenylyltransferase and sulfurtransferase uba4	IPR001763 (Rhodanese-like domain), IPR016040 (NAD(P)-binding domain), IPR028885 (Adenylyltransferase and sulfurtransferase MOCS3/Uba4)	GO:0002143 (tRNA wobble position uridine thiolation), GO:0003824 (catalytic activity), GO:0004792 (thiosulfate sulfurtransferase activity), GO:0005829 (cytosol)
Niben101Scf01657g01006.1	sp|P0C5A3|DPNP_ORYSA	****	3'(2'),5'-bisphosphate nucleotidase	IPR000760 (Inositol monophosphatase)	GO:0006790 (sulfur compound metabolic process), GO:0008441 (3'(2'),5'-bisphosphate nucleotidase activity), GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf13530g01005.1	sp|Q9LFT0|TBL19_ARATH	***-	Protein trichome birefringence-like 19	IPR026057 (PC-Esterase)	
Niben101Ctg12508g00001.1	sp|Q9FJH8|NRT24_ARATH	***-	High affinity nitrate transporter 2.4	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03895g01008.1	sp|Q75I54|CCA31_ORYSJ	*-**	Cyclin-A3-1	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf00578g00008.1	sp|Q9XFT3|PSBQ1_ARATH	****	Oxygen-evolving enhancer protein 3-1, chloroplastic	IPR008797 (Photosystem II PsbQ, oxygen evolving complex), IPR023222 (PsbQ-like domain)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf04400g04002.1	sp|B6SM63|NNJA5_MAIZE	***-	Ninja-family protein 5	IPR012463 (Ninja)	
Niben101Scf11289g00017.1	sp|Q43111|PME3_PHAVU	****	Pectinesterase 3	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf00783g00007.1	sp|B8CPH7|RSMF_SHEPW	*-**	Ribosomal RNA small subunit methyltransferase F	IPR023267 (RNA (C5-cytosine) methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0008168 (methyltransferase activity), GO:0016428 (tRNA (cytosine-5-)-methyltransferase activity)
Niben101Scf04509g01001.1	sp|Q9Y4A5|TRRAP_HUMAN	*-*-	Transformation/transcription domain-associated protein	IPR011989 (Armadillo-like helical)	
Niben101Scf04388g00021.1	AT2G41770.1	***-	Protein of unknown function (DUF288) LENGTH=771	IPR005049 (Protein of unknown function DUF288)	
Niben101Scf07008g01002.1	sp|Q54NU2|RAB1D_DICDI	***-	Ras-related protein Rab-1D	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf04216g02008.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf03156g04011.1	emb|CDY11183.1|	***-	BnaA03g00190D [Brassica napus]	IPR006342 (Methyltransferase FkbM), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf01782g00011.1	sp|Q6GHD2|MIAA_STAAR	*-**	tRNA dimethylallyltransferase	IPR002627 (tRNA isopentenyltransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf05081g01019.1	AT5G04250.1	***-	Cysteine proteinases superfamily protein LENGTH=345	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf03861g02013.1	AT3G13530.1	****	mitogen-activated protein kinase kinase kinase 7 LENGTH=1368	IPR011009 (Protein kinase-like domain), IPR016024 (Armadillo-type fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00064g00018.1			Unknown protein		
Niben101Scf01521g08012.1	emb|CDY14706.1|	*-*-	BnaC05g19630D [Brassica napus]	IPR007679 (Protein of unknown function DUF569), IPR008999 (Actin cross-linking)	
Niben101Scf02668g02009.1	sp|B4MLR8|UBP36_DROWI	*-**	Ubiquitin carboxyl-terminal hydrolase 36	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf02335g04008.1	sp|Q9SNB9|TRP2_ARATH	*-*-	Telomere repeat-binding protein 2		
Niben101Scf02111g16012.1	gb|EMT24327.1|	--*-	Serine/threonine-protein kinase CTR1 [Aegilops tauschii]		
Niben101Scf08002g01002.1	AT1G51700.1	*-*-	DOF zinc finger protein 1 LENGTH=194	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08047g02010.1	AT1G47670.1	***-	Transmembrane amino acid transporter family protein LENGTH=519	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf00854g01093.1	ref|YP_005090400.1|	*-*-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf04992g01006.1			Unknown protein		
Niben101Scf05467g00010.1	sp|P49576|PPX1_PARTE	****	Serine/threonine-protein phosphatase PP-X homolog 1	IPR011236 (Serine/threonine protein phosphatase 5), IPR029052 (Metallo-dependent phosphatase-like)	GO:0004721 (phosphoprotein phosphatase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006470 (protein dephosphorylation), GO:0016787 (hydrolase activity)
Niben101Scf10015g09021.1	AT2G39380.1	****	exocyst subunit exo70 family protein H2 LENGTH=637	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf01953g00002.1	AT4G00880.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=122	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01062g04007.1	AT3G59500.1	***-	Integral membrane HRF1 family protein LENGTH=269	IPR005578 (Hrf1)	
Niben101Scf01658g00003.1	sp|P43507|CPR3_CAEEL	*-**	Cathepsin B-like cysteine proteinase 3	IPR000118 (Granulin), IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf05078g08031.1	AT3G03740.1	***-	BTB-POZ and MATH domain 4 LENGTH=465	IPR008974 (TRAF-like), IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf12582g00002.1	sp|Q9SJM6|SAP4_ARATH	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 4	IPR000058 (Zinc finger, AN1-type), IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf09960g00002.1	sp|Q9FGS5|NRT31_ARATH	****	High-affinity nitrate transporter 3.1	IPR016605 (High-affinity nitrate transporter)	GO:0010167 (response to nitrate), GO:0015706 (nitrate transport)
Niben101Scf02915g05004.1	ref|XP_003612054.1|	***-	Replication factor C subunit [Medicago truncatula]		
Niben101Scf06193g02005.1	sp|Q9FL53|FLA21_ARATH	*-*-	Fasciclin-like arabinogalactan protein 21	IPR000782 (FAS1 domain)	
Niben101Scf01537g01001.1	sp|Q8H157|PTR19_ARATH	***-	Protein NRT1/ PTR FAMILY 4.6	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf07589g01003.1	ref|XP_002518339.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF44099.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11480g03025.1	sp|Q3K5T2|RSMA_PSEPF	****	Ribosomal RNA small subunit methyltransferase A	IPR001737 (Ribosomal RNA adenine methyltransferase KsgA/Erm), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0000154 (rRNA modification), GO:0000179 (rRNA (adenine-N6,N6-)-dimethyltransferase activity), GO:0006364 (rRNA processing), GO:0008649 (rRNA methyltransferase activity)
Niben101Scf00487g05001.1	emb|CDY51241.1|	*-*-	BnaA03g06970D [Brassica napus]		
Niben101Scf02449g02012.1	sp|O48520|DPOD2_ARATH	*-*-	DNA polymerase delta small subunit	IPR024826 (DNA polymerase delta/II small subunit family)	
Niben101Scf05565g01002.1			Unknown protein		
Niben101Scf01926g00011.1	AT1G61800.1	*-*-	glucose-6-phosphate/phosphate translocator 2 LENGTH=388	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf06078g02011.1	gb|AAD09951.1|	*-*-	CTF2A [Arabidopsis thaliana]	IPR003953 (FAD binding domain)	
Niben101Scf07352g03001.1	sp|Q9S7R3|LSH10_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	IPR006936 (ALOG domain)	
Niben101Scf06081g03020.1	gb|AAW30286.1|	*-**	cytochrome c biogenesis ccmF [Amborella trichopoda]	IPR002541 (Cytochrome c assembly protein), IPR003567 (Cytochrome c-type biogenesis protein)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf07191g02026.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07036g03001.1	sp|A7FZ81|RL11_CLOB1	***-	50S ribosomal protein L11	IPR000911 (Ribosomal protein L11/L12)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10041g00024.1	ref|WP_017343674.1|	***-	2-dehydro-3-deoxyphosphogluconate aldolase [Halorubrum sp. T3]	IPR000887 (KDPG/KHG aldolase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016829 (lyase activity)
Niben101Scf25246g00003.1	ref|YP_009045741.1|	--*-	orf105a (mitochondrion) [Batis maritima] gb|AIC83344.1| orf105a (mitochondrion) [Batis maritima]		
Niben101Scf05278g01004.1	sp|Q9LUJ2|PP249_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06382g00005.1	sp|Q969T9|WBP2_HUMAN	***-	WW domain-binding protein 2		
Niben101Scf00837g12025.1			Unknown protein		
Niben101Scf18643g00008.1	sp|Q5D869|NRPE1_ARATH	--*-	DNA-directed RNA polymerase V subunit 1	IPR015801 (Copper amine oxidase, N2/N3-terminal), IPR021602 (Protein of unknown function DUF3223)	GO:0005507 (copper ion binding), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding)
Niben101Scf01062g01005.1	sp|O49255|NAC29_ARATH	--**	NAC transcription factor 29	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00454g01010.1	sp|B2GBQ6|DNAJ_LACF3	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf00854g11089.1	sp|Q74GA8|NUOA1_GEOSL	****	NADH-quinone oxidoreductase subunit A 1	IPR000440 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01051g09029.1	AT2G45360.1	***-	Protein of unknown function (DUF1442) LENGTH=215	IPR009902 (Protein of unknown function DUF1442), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00809g01009.1	sp|B0BN18|PFD2_RAT	****	Prefoldin subunit 2	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex), GO:0051082 (unfolded protein binding)
Niben101Scf18551g00003.1	sp|P11801|KPSH1_HUMAN	*-**	Serine/threonine-protein kinase H1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01739g06006.1	sp|P57699|ATKB_HALSA	****	Potassium-transporting ATPase B chain	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0005507 (copper ion binding), GO:0006812 (cation transport), GO:0016021 (integral component of membrane), GO:0019829 (cation-transporting ATPase activity), GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf06156g02004.1	sp|A4J5W7|RS15_DESRM	-**-	30S ribosomal protein S15	IPR000589 (Ribosomal protein S15)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf11182g02006.1	sp|Q39265|ZFP6_ARATH	--*-	Zinc finger protein 6	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf02139g00001.1	ref|WP_013255921.1|	--*-	GntR family transcriptional regulator [Spirochaeta smaragdinae] ref|YP_003805056.1| GntR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gb|ADK82462.1| transcriptional regulator, GntR family [Spirochaeta smaragdinae DSM 11293]	IPR029071 (Ubiquitin-related domain)	
Niben101Scf01442g02015.1	AT3G52790.1	***-	peptidoglycan-binding LysM domain-containing protein LENGTH=109	IPR018392 (LysM domain)	
Niben101Scf13290g00001.1	AT1G03920.1	****	Protein kinase family protein LENGTH=569	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain), IPR011993 (Pleckstrin homology-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04785g01021.1	sp|Q67ZB3|FRL3_ARATH	*-*-	FRIGIDA-like protein 3	IPR012474 (Frigida-like)	
Niben101Scf01006g04005.1	sp|Q54VX4|MCFJ_DICDI	***-	Mitochondrial substrate carrier family protein J	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf15723g00009.1	ref|NP_001062770.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf16258g01005.1	AT1G09290.1	***-	unknown protein; Has 73 Blast hits to 71 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 11; Plants - 54; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). LENGTH=348		
Niben101Scf06218g05005.1	ref|XP_007017834.1|	****	Transcription elongation factor family protein, putative isoform 1 [Theobroma cacao] ref|XP_007017835.1| Transcription elongation factor family protein, putative isoform 1 [Theobroma cacao] gb|EOY15059.1| Transcription elongation factor family protein, putative isoform 1 [Theobroma cacao] gb|EOY15060.1| Transcription elongation factor family protein, putative isoform 1 [Theobroma cacao]	IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf05910g00002.1	sp|C5D6U5|MENE_GEOSW	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Ctg15408g00004.1	AT4G26990.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=474		
Niben101Scf01670g05004.1	AT4G35440.2	*-**	chloride channel E LENGTH=749	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf13856g00013.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01233g00014.1	AT5G25360.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=169	IPR025124 (Domain of unknown function DUF4050)	
Niben101Scf23592g00002.1	sp|Q6IV56|RN141_DANRE	--*-	RING finger protein 141	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf27183g00012.1	sp|Q9MB46|VATE_CITUN	****	V-type proton ATPase subunit E	IPR002842 (ATPase, V1/A1 complex, subunit E)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf16888g00005.1	AT2G21190.1	****	ER lumen protein retaining receptor family protein LENGTH=269	IPR000133 (ER lumen protein retaining receptor)	GO:0006621 (protein retention in ER lumen), GO:0016021 (integral component of membrane), GO:0046923 (ER retention sequence binding)
Niben101Scf22917g00002.1	emb|CDY44804.1|	*-*-	BnaC02g00830D [Brassica napus]		
Niben101Scf11408g01006.1	ref|XP_007013942.1|	--*-	HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase isoform 4, partial [Theobroma cacao] gb|EOY31561.1| HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase isoform 4, partial [Theobroma cacao]		
Niben101Scf09552g01002.1	sp|Q84LH3|WEX_ARATH	*-**	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf05554g05007.1	AT2G29050.1	***-	RHOMBOID-like 1 LENGTH=389	IPR002610 (Peptidase S54, rhomboid)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf00226g02003.1	gb|KEH20434.1|	*-*-	alpha/beta fold hydrolase [Medicago truncatula]		
Niben101Scf01150g02003.1	ref|XP_007038295.1|	*-*-	F-box family protein, putative [Theobroma cacao] gb|EOY22796.1| F-box family protein, putative [Theobroma cacao]		
Niben101Scf06435g03021.1	ref|XP_503602.1|	--*-	YALI0E05819p [Yarrowia lipolytica] emb|CAG79183.1| YALI0E05819p [Yarrowia lipolytica CLIB122]		
Niben101Scf11399g00013.1			Unknown protein		
Niben101Scf02606g05025.1	AT2G36970.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=490	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04124g04001.1	ref|XP_002528918.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF33447.1| conserved hypothetical protein [Ricinus communis]	IPR003604 (Zinc finger, U1-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf13164g02007.1	sp|Q5PNU3|AMSH3_ARATH	***-	AMSH-like ubiquitin thioesterase 3	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR015063 (USP8 dimerisation domain)	GO:0005515 (protein binding)
Niben101Scf04918g07001.1	sp|Q8VCL5|S17A9_MOUSE	--*-	Solute carrier family 17 member 9		
Niben101Scf02581g00006.1	AT5G51010.1	***-	Rubredoxin-like superfamily protein LENGTH=154	IPR004039 (Rubredoxin-type fold)	GO:0005506 (iron ion binding)
Niben101Scf00282g03020.1	AT4G16110.1	*-*-	response regulator 2 LENGTH=664	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding)
Niben101Scf23958g00004.1			Unknown protein		
Niben101Scf09767g00004.1	ref|NP_001046162.1|	*-*-	product [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant), IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf02902g03009.1	sp|Q39117|TGT2_ARATH	*-*-	Trihelix transcription factor GT-2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf11884g00003.1	emb|CDX73116.1|	***-	BnaC06g35640D [Brassica napus]	IPR007656 (Zein-binding domain)	
Niben101Scf14845g01001.1	sp|P40228|CSK2B_ARATH	****	Casein kinase II subunit beta	IPR000704 (Casein kinase II, regulatory subunit)	GO:0005956 (protein kinase CK2 complex), GO:0019887 (protein kinase regulator activity)
Niben101Scf11937g00001.1	sp|P40690|ALKE_BABBO	-**-	Aldo-keto reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf16244g02031.1	AT3G12270.1	****	protein arginine methyltransferase 3 LENGTH=601	IPR025799 (Protein arginine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity)
Niben101Scf06280g03004.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf14274g01018.1	sp|P27061|PPA1_SOLLC	--*-	Acid phosphatase 1		
Niben101Scf02854g08003.1	sp|Q9FHQ1|GDL80_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04875g06002.1	AT3G53090.1	*-**	ubiquitin-protein ligase 7 LENGTH=1142	IPR000569 (HECT)	GO:0004842 (ubiquitin-protein transferase activity)
Niben101Scf05135g04015.1	gb|ADR31620.1|	***-	DUF579 protein [Populus trichocarpa]	IPR021148 (Putative polysaccharide biosynthesis protein)	
Niben101Scf38838g00006.1	sp|Q1QRT7|GPMA_NITHX	--*-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase		
Niben101Ctg03116g00001.1	sp|O48540|MAN1_SOLLC	*-*-	Mannan endo-1,4-beta-mannosidase 1	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06157g01005.1	sp|Q40477|ERF4_TOBAC	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf16019g00008.1	sp|F4JAU3|P4H2_ARATH	*-*-	Prolyl 4-hydroxylase 2		
Niben101Scf02821g03014.1	AT2G26150.1	*-**	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00560g04005.1	ref|WP_026796933.1|	--*-	MULTISPECIES: hypothetical protein [Planktothrix]		
Niben101Scf01249g03024.1	sp|Q6PC19|SSU72_DANRE	****	RNA polymerase II subunit A C-terminal domain phosphatase SSU72	IPR006811 (RNA polymerase II subunit A)	GO:0004721 (phosphoprotein phosphatase activity), GO:0005634 (nucleus), GO:0006397 (mRNA processing)
Niben101Scf00868g01004.1	AT2G37420.1	*-**	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00163g10009.1	AT1G28710.1	***-	Nucleotide-diphospho-sugar transferase family protein LENGTH=340	IPR005069 (Nucleotide-diphospho-sugar transferase)	
Niben101Scf02637g00012.1	sp|Q0U4Z8|VPS27_PHANO	*-*-	Vacuolar protein sorting-associated protein 27	IPR004152 (GAT domain), IPR008942 (ENTH/VHS)	GO:0005622 (intracellular), GO:0006886 (intracellular protein transport)
Niben101Scf06736g10003.1	ref|XP_002530829.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF31542.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04444g09021.1	ref|XP_007020414.1|	*-*-	WW domain-containing protein, putative isoform 4 [Theobroma cacao] gb|EOY11939.1| WW domain-containing protein, putative isoform 4 [Theobroma cacao]	IPR001202 (WW domain)	GO:0005515 (protein binding)
Niben101Scf06295g04002.1	AT1G65790.1	*-**	receptor kinase 1 LENGTH=843	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR017853 (Glycoside hydrolase superfamily), IPR029070 (Chitinase insertion domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004568 (chitinase activity), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02027g02002.1	AT5G07380.3	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: egg cell; Has 84 Blast hits to 81 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=642		
Niben101Scf00313g09001.1	sp|Q6NWL4|RCD1_DANRE	***-	Cell differentiation protein RCD1 homolog	IPR007216 (Rcd1)	
Niben101Ctg13774g00001.1	sp|Q52QH4|NAC68_ORYSJ	***-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05670g00010.1			Unknown protein		
Niben101Scf01077g04012.1	AT1G74040.1	***-	2-isopropylmalate synthase 1 LENGTH=631	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0019752 (carboxylic acid metabolic process), GO:0046912 (transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer)
Niben101Scf23998g01012.1	sp|O80560|IP5PC_ARATH	****	Type I inositol 1,4,5-trisphosphate 5-phosphatase 12	IPR005135 (Endonuclease/exonuclease/phosphatase), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf10054g00007.1	gb|ACV41016.1|	***-	self-incompatibility protein [Argemone munita]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf02461g03001.1	sp|Q96US8|G3P_SCLSC	***-	Glyceraldehyde-3-phosphate dehydrogenase	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf13833g03002.1	gb|KEH22373.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00991g13024.1	sp|Q1JP73|CI064_BOVIN	***-	UPF0553 protein C9orf64 homolog	IPR019438 (Protein of unknown function DUF2419)	
Niben101Scf01192g00008.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf07365g01021.1	sp|Q7XJJ7|FAAH_ARATH	*-*-	Fatty acid amide hydrolase	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf02420g03011.1	sp|Q93Z92|RING4_ARATH	--*-	E3 ubiquitin-protein ligase	IPR003892 (Ubiquitin system component Cue), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02552g03025.1	AT1G76020.1	***-	Thioredoxin superfamily protein LENGTH=225	IPR012336 (Thioredoxin-like fold)	
Niben101Scf05368g01010.1	sp|Q9S7G7|MB3R1_ARATH	*-*-	Myb-related protein 3R-1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01956g07002.1			Unknown protein		
Niben101Scf04500g01022.1			Unknown protein		
Niben101Scf09004g02028.1	sp|Q8RWQ4|RGAP7_ARATH	***-	Rho GTPase-activating protein 7	IPR008936 (Rho GTPase activation protein), IPR011993 (Pleckstrin homology-like domain), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf07227g01008.1	AT2G39340.1	*-*-	SAC3/GANP/Nin1/mts3/eIF-3 p25 family LENGTH=1006	IPR005062 (SAC3/GANP/Nin1/mts3/eIF-3 p25)	
Niben101Scf09141g00003.1	sp|Q9LVL1|PER68_ARATH	*-**	Peroxidase 68	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02041g04013.1	sp|Q6GM29|SAC1_XENLA	****	Phosphatidylinositide phosphatase SAC1	IPR002013 (SAC domain), IPR030069 (Phosphoinositide phosphatase SAC6/7/8)	GO:0042578 (phosphoric ester hydrolase activity), GO:0052866 (phosphatidylinositol phosphate phosphatase activity)
Niben101Scf00474g02010.1	AT4G09060.2	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=367		
Niben101Scf05316g02007.1	sp|P53456|ACT2_DIPDE	*-*-	Actin-2	IPR004000 (Actin family)	
Niben101Scf03934g05001.1	sp|A1A5K2|CLA1B_XENLA	*-*-	CLIP-associating protein 1-B	IPR016024 (Armadillo-type fold), IPR024395 (CLASP N-terminal domain)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf03069g01002.1	AT1G12310.1	****	Calcium-binding EF-hand family protein LENGTH=148	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01025g04006.1	AT3G09570.1	***-	Lung seven transmembrane receptor family protein LENGTH=439	IPR009637 (Transmembrane receptor, eukaryota)	GO:0016021 (integral component of membrane)
Niben101Scf00687g04002.1	sp|Q40585|VATL_TOBAC	*-**	V-type proton ATPase 16 kDa proteolipid subunit	IPR000245 (V-ATPase proteolipid subunit), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf02909g04015.1	gb|KEH22208.1|	***-	late embryogenesis abundant protein [Medicago truncatula]	IPR005513 (Late embryogenesis abundant protein, LEA-25/LEA-D113)	GO:0009790 (embryo development)
Niben101Scf06678g04010.1	sp|P32026|DEF_TOBAC	*-*-	Defensin-like protein	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf05137g00001.1	sp|P0CI03|PTR28_ARATH	***-	Protein NRT1/ PTR FAMILY 5.6	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf08590g03019.1	sp|Q9FJZ9|PER72_ARATH	****	Peroxidase 72	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09203g00003.1	AT3G22750.1	****	Protein kinase superfamily protein LENGTH=378	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03143g11028.1	gb|KEH34326.1|	--*-	protein phosphatase 2C-like protein [Medicago truncatula]		
Niben101Scf04400g03002.1	sp|Q94G86|ALL9_OLEEU	*-*-	Glucan endo-1,3-beta-D-glucosidase	IPR012946 (X8 domain)	
Niben101Scf03634g02010.1	AT1G58030.1	*-**	cationic amino acid transporter 2 LENGTH=635	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf05839g00001.1	ref|XP_007013284.1|	****	Integral membrane protein-like isoform 1 [Theobroma cacao] ref|XP_007013285.1| Integral membrane protein-like isoform 1 [Theobroma cacao] gb|EOY30903.1| Integral membrane protein-like isoform 1 [Theobroma cacao] gb|EOY30904.1| Integral membrane protein-like isoform 1 [Theobroma cacao]	IPR002794 (Protein of unknown function DUF92, TMEM19)	GO:0016021 (integral component of membrane)
Niben101Scf00861g07010.1			Unknown protein		
Niben101Scf08709g00009.1	sp|Q00624|ASOL_BRANA	--*-	L-ascorbate oxidase homolog		
Niben101Scf04091g00005.1	sp|Q5U458|DJC11_MOUSE	*-*-	DnaJ homolog subfamily C member 11	IPR024586 (DnaJ-like protein C11, C-terminal)	
Niben101Scf06736g02002.1	AT5G05210.1	*-*-	Surfeit locus protein 6 LENGTH=386	IPR007019 (Surfeit locus 6), IPR029188 (Ribosomal RNA-processing protein 14, N-terminal), IPR029190 (Ribosomal RNA-processing protein 14/surfeit locus protein 6, C-terminal domain)	
Niben101Scf01927g09003.1	sp|O04373|ILL4_ARATH	****	IAA-amino acid hydrolase ILR1-like 4	IPR002933 (Peptidase M20)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf09649g02016.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg13858g00004.1	sp|A2SLT0|MNMA_METPP	****	tRNA-specific 2-thiouridylase MnmA	IPR004506 (tRNA-specific 2-thiouridylase), IPR023382 (Adenine nucleotide alpha hydrolase-like domains)	GO:0008033 (tRNA processing), GO:0016740 (transferase activity), GO:0016783 (sulfurtransferase activity)
Niben101Scf05938g01012.1	sp|Q9SH60|PP103_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf11952g00001.1	ref|NP_196432.1|	--*-	suppressor of phytochrome b 5 [Arabidopsis thaliana] emb|CAB93716.1| putative protein [Arabidopsis thaliana] gb|AAS49093.1| [Arabidopsis thaliana] gb|AED91258.1| suppressor of phytochrome b 5 [Arabidopsis thaliana]		
Niben101Scf12102g01006.1	gb|AES65140.2|	*-*-	VQ motif protein [Medicago truncatula]		
Niben101Scf07226g00001.1			Unknown protein		
Niben101Scf05307g01001.1	sp|Q9M040|PDC4_ARATH	*-*-	Pyruvate decarboxylase 4	IPR012001 (Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain), IPR029035 (DHS-like NAD/FAD-binding domain), IPR029061 (Thiamin diphosphate-binding fold)	GO:0030976 (thiamine pyrophosphate binding)
Niben101Scf04794g00003.1	sp|Q9LQ16|PPR94_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf08711g00020.1	AT2G46070.1	****	mitogen-activated protein kinase 12 LENGTH=372	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09363g00022.1	sp|P69781|GAT12_ARATH	*-**	GATA transcription factor 12	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03937g01010.1	sp|P00303|BABL_CUCSA	***-	Basic blue protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf04403g00012.1	AT1G69240.1	***-	methyl esterase 15 LENGTH=444	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01852g04029.1	AT4G38970.1	****	fructose-bisphosphate aldolase 2 LENGTH=398	IPR000741 (Fructose-bisphosphate aldolase, class-I), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004332 (fructose-bisphosphate aldolase activity), GO:0006096 (glycolytic process)
Niben101Scf02211g03005.1	sp|Q9C8K7|FBK21_ARATH	***-	F-box/kelch-repeat protein	IPR000014 (PAS domain), IPR001610 (PAC motif), IPR001810 (F-box domain), IPR015915 (Kelch-type beta propeller)	GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0007165 (signal transduction)
Niben101Scf07327g02015.1	AT1G63800.1	*-*-	ubiquitin-conjugating enzyme 5 LENGTH=185	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf13231g01013.1	sp|Q8RWM3|MED27_ARATH	***-	Mediator of RNA polymerase II transcription subunit 27	IPR021627 (Mediator complex, subunit Med27)	
Niben101Scf07244g03004.1	AT3G58800.1	***-	unknown protein; Has 75 Blast hits to 75 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 17; Other Eukaryotes - 5 (source: NCBI BLink). LENGTH=344	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03129g01009.1	sp|Q84N38|PVIP_NICBE	***-	OBERON-like protein	IPR004082 (Protein OBERON)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03396g07014.1	sp|O74476|IMB3_SCHPO	***-	Importin subunit beta-3	IPR007598 (Protein of unknown function DUF577), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02344g03001.1	sp|A7FL48|LPXH_YERP3	--*-	UDP-2,3-diacylglucosamine hydrolase		
Niben101Scf00551g05002.1	ref|WP_026327018.1|	****	peptidase M16 [Proteiniphilum acetatigenes]	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0046872 (metal ion binding)
Niben101Scf03653g01010.1	sp|Q3E6Q1|PPR32_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02544g01013.1	sp|B2J059|ATPG_NOSP7	*-**	ATP synthase gamma chain	IPR000131 (ATPase, F1 complex, gamma subunit), IPR023633 (ATPase, F1 complex, gamma subunit domain)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf04473g05009.1	sp|A2YQ56|LONM_ORYSI	*-*-	Lon protease homolog, mitochondrial		
Niben101Scf06753g00008.1	sp|Q5TZ07|PPAC2_DANRE	*-*-	Presqualene diphosphate phosphatase	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Scf14627g00001.1	sp|Q3SZF8|SMD2_BOVIN	****	Small nuclear ribonucleoprotein Sm D2	IPR010920 (Like-Sm (LSM) domain), IPR027248 (Small nuclear ribonucleoprotein Sm D2)	GO:0008380 (RNA splicing), GO:0030532 (small nuclear ribonucleoprotein complex)
Niben101Scf10559g01032.1	AT1G64530.1	*-*-	Plant regulator RWP-RK family protein LENGTH=841	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain)	GO:0005515 (protein binding)
Niben101Scf03164g07012.1	sp|Q9SUY0|FB244_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02538g00001.1	sp|Q6D5W6|MDTK_PECAS	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00332g08008.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01362g03007.1			Unknown protein		
Niben101Scf06424g02028.1	AT3G05680.2	***-	embryo defective 2016 LENGTH=2152	IPR026736 (Protein virilizer)	
Niben101Scf01546g00008.1	sp|Q4K9V8|CYSG_PSEF5	***-	Siroheme synthase	IPR000878 (Tetrapyrrole methylase)	GO:0006779 (porphyrin-containing compound biosynthetic process), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity), GO:0043115 (precorrin-2 dehydrogenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03341g01005.1	AT3G03100.1	****	NADH:ubiquinone oxidoreductase, 17.2kDa subunit LENGTH=159	IPR007763 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0009055 (electron carrier activity), GO:0016020 (membrane)
Niben101Scf02531g01026.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06324g00004.1	ref|NP_179175.3|	***-	P-loop containing nucle [Arabidopsis thaliana]	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf06149g00008.1	sp|Q9SLB7|LBD16_ARATH	***-	LOB domain-containing protein 16	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf08137g00006.1	AT1G48405.1	***-	Kinase interacting (KIP1-like) family protein LENGTH=297	IPR011684 (KIP1-like)	
Niben101Scf04665g02006.1	gb|EQB56868.1|	*-*-	NADH:ubiquinone oxidoreductase 11.6kD subunit [Colletotrichum gloeosporioides Cg-14]	IPR019329 (NADH:ubiquinone oxidoreductase, ESSS subunit)	
Niben101Scf03964g03009.1	gb|ADL63828.1|	*-*-	ribosomal protein S3, partial (mitochondrion) [Degeneria roseiflora]		
Niben101Scf02990g03001.1	sp|Q9T068|EPFL2_ARATH	***-	EPIDERMAL PATTERNING FACTOR-like protein 2		
Niben101Scf04568g02005.1	sp|Q5SPX3|RN215_MOUSE	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05018g02003.1	sp|P53987|MOT1_RAT	--*-	Monocarboxylate transporter 1	IPR005134 (Uncharacterised protein family UPF0114)	
Niben101Scf02482g01012.1	AT2G30460.1	***-	Nucleotide/sugar transporter family protein LENGTH=353	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf02587g00001.1	ref|XP_003608310.1|	--*-	F-box/FBD/LRR-repeat protein [Medicago truncatula]		
Niben101Scf04551g01015.1	sp|Q41001|BCP_PEA	***-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf09098g00001.1	sp|Q60936|ADCK3_MOUSE	***-	Chaperone activity of bc1 complex-like, mitochondrial	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03515g00078.1	sp|Q135X7|NUOD_RHOPS	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07339g02021.1	AT2G39970.1	***-	Mitochondrial substrate carrier family protein LENGTH=331	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf02601g04009.1	AT2G05590.2	*-*-	TLD-domain containing nucleolar protein LENGTH=303	IPR006571 (TLDc domain)	
Niben101Scf02077g10011.1	gb|KEH35040.1|	--*-	phox (PX) domain protein [Medicago truncatula]		
Niben101Scf07933g00004.1	AT5G61210.1	*-*-	soluble N-ethylmaleimide-sensitive factor adaptor protein 33 LENGTH=300		
Niben101Scf01998g04008.1	sp|O42430|CP1A1_LIMLI	--*-	Cytochrome P450 1A1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02220g00002.1	AT5G66940.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=225	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01697g07004.1			Unknown protein		
Niben101Scf05402g00004.1	sp|Q9FIX3|PP407_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf09659g03003.1	ref|XP_007028518.1|	***-	Plant protein 1589 of Uncharacterized protein function isoform 4 [Theobroma cacao] gb|EOY09020.1| Plant protein 1589 of Uncharacterized protein function isoform 4 [Theobroma cacao]		
Niben101Scf02507g04013.1	sp|P53632|PAP2_YEAST	*-*-	Poly(A) RNA polymerase protein 2	IPR002058 (PAP/25A-associated), IPR002934 (Nucleotidyl transferase domain)	GO:0016779 (nucleotidyltransferase activity)
Niben101Scf04113g14006.1			Unknown protein		
Niben101Scf02908g06010.1	sp|Q9SDA8|FBL10_ARATH	***-	F-box/LRR-repeat protein 10	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf00959g00018.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf06945g00013.1	emb|CDY50792.1|	***-	BnaCnng19560D [Brassica napus]	IPR007656 (Zein-binding domain)	
Niben101Scf04083g02009.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf04384g05018.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf08806g01007.1	emb|CDX96071.1|	***-	BnaA07g26600D [Brassica napus]		
Niben101Scf03883g01003.1			Unknown protein		
Niben101Scf09217g01001.1	AT4G22240.1	***-	Plastid-lipid associated protein PAP / fibrillin family protein LENGTH=310	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf16582g00016.1	ref|WP_033479439.1|	*-*-	aminoacyl peptidase [Xanthomonas axonopodis]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Ctg13948g00001.1			Unknown protein		
Niben101Scf12405g00017.1	AT1G21200.1	***-	sequence-specific DNA binding transcription factors LENGTH=443		
Niben101Scf00983g01007.1	AT1G55360.1	***-	Protein of Unknown Function (DUF239) LENGTH=422	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf02278g01011.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07405g05010.1	ref|XP_007023562.1|	*-*-	Mitochondrial import inner membrane translocase subunit tim-10 isoform 1 [Theobroma cacao] gb|EOY26184.1| Mitochondrial import inner membrane translocase subunit tim-10 isoform 1 [Theobroma cacao]		
Niben101Scf07638g02006.1	sp|Q9BPW8|NIPS1_HUMAN	--*-	Protein NipSnap homolog 1		
Niben101Scf11399g00011.1	sp|Q7Q732|DHRS7_ANOGA	*-**	Dehydrogenase/reductase SDR family protein 7-like	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf13429g04021.1	sp|Q93VK8|RGF6_ARATH	--*-	Root meristem growth factor 6		
Niben101Scf03371g00008.1	sp|Q01593|ABI3_ARATH	*-*-	B3 domain-containing transcription factor ABI3	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf01655g00001.1	ref|XP_002872926.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH49185.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Ctg15612g00005.1	sp|Q56WM6|ROGFE_ARATH	*-**	Rop guanine nucleotide exchange factor 14	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf03293g01007.1	sp|P93194|RPK1_IPONI	--**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01117g00002.1	AT5G08250.1	*-*-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02820g00002.1	sp|B2LMI9|PSBC_GUIAB	*-**	Photosystem II CP43 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf02911g03014.1	sp|Q07346|DCE_PETHY	***-	Glutamate decarboxylase	IPR015424 (Pyridoxal phosphate-dependent transferase)	
Niben101Scf10015g00015.1	sp|Q6GJI1|SYM_STAAR	****	Methionine--tRNA ligase	IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR015413 (Methionyl/Leucyl tRNA synthetase)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004825 (methionine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006431 (methionyl-tRNA aminoacylation)
Niben101Scf02303g00007.1	sp|Q8C5L3|CNOT2_MOUSE	*-**	CCR4-NOT transcription complex subunit 2	IPR007282 (NOT2/NOT3/NOT5)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02375g04009.1	AT1G58370.1	*-**	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein LENGTH=917	IPR008979 (Galactose-binding domain-like)	GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf00825g03003.1	sp|P49211|RL321_ARATH	***-	60S ribosomal protein L32-1	IPR001515 (Ribosomal protein L32e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06218g05003.1	sp|Q5GUR8|RHLB_XANOR	*-**	ATP-dependent RNA helicase RhlB	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf00324g02025.1	AT5G24240.1	***-	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein LENGTH=574	IPR011009 (Protein kinase-like domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00586g00007.1	sp|P23901|ALDR_HORVU	****	Aldose reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf13429g03011.1	AT2G45180.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=134	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00630g05010.1	gb|KEH33535.1|	--*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf08785g02011.1	sp|O23252|IF4E1_ARATH	*-**	Eukaryotic translation initiation factor 4E-1	IPR001040 (Translation Initiation factor eIF- 4e), IPR023398 (Translation Initiation factor eIF- 4e-like  domain)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0006413 (translational initiation)
Niben101Ctg10654g00002.1	sp|Q9HJ83|DNAJ_THEAC	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf13460g00008.1	sp|Q14FG6|RPOC1_POPAL	--*-	DNA-directed RNA polymerase subunit beta'		
Niben101Scf20666g00001.1	sp|P51824|ARF1_SOLTU	*-*-	ADP-ribosylation factor 1	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00761g05015.1	sp|Q9LHJ8|SAP5_ARATH	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	IPR000058 (Zinc finger, AN1-type)	GO:0008270 (zinc ion binding)
Niben101Scf03702g04016.1			Unknown protein		
Niben101Scf11480g03027.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07690g00004.1	sp|Q9AXE3|DCAM_DAUCA	--*-	S-adenosylmethionine decarboxylase proenzyme		
Niben101Scf08179g02012.1	sp|O04937|DHEA_NICPL	***-	Glutamate dehydrogenase A	IPR006095 (Glutamate/phenylalanine/leucine/valine dehydrogenase), IPR016040 (NAD(P)-binding domain)	GO:0006520 (cellular amino acid metabolic process), GO:0016491 (oxidoreductase activity), GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00152g09005.1	sp|F4JLS1|LDL3_ARATH	*-*-	Lysine-specific histone demethylase 1 homolog 3		
Niben101Scf03254g04013.1	AT5G01920.1	****	Protein kinase superfamily protein LENGTH=495	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09812g00002.1	sp|Q9FHW9|GDL90_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf10991g00003.1	sp|Q501D5|MCMBP_ARATH	***-	Mini-chromosome maintenance complex-binding protein	IPR019140 (Mini-chromosome maintenance complex-binding protein)	
Niben101Scf04992g01008.1	gb|ABB46931.2|	*-*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf05183g09006.1	AT2G31890.1	*-*-	RAP LENGTH=671	IPR013584 (RAP domain)	
Niben101Scf00605g01013.1	sp|Q83QQ0|FADJ_SHIFL	****	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain), IPR018376 (Enoyl-CoA hydratase/isomerase, conserved site), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0003857 (3-hydroxyacyl-CoA dehydrogenase activity), GO:0006631 (fatty acid metabolic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09825g01008.1	sp|Q9SE00|PPAF1_IPOBA	*-*-	Purple acid phosphatase 1	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf00543g00008.1	AT1G59650.1	***-	Protein of unknown function (DUF1336) LENGTH=492	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf05057g05005.1	ref|XP_002535265.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF27117.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08926g07004.1	AT3G08640.1	***-	Protein of unknown function (DUF3411) LENGTH=337	IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf03227g02022.1	AT3G03710.1	****	polyribonucleotide nucleotidyltransferase, putative LENGTH=922	IPR012162 (Polyribonucleotide nucleotidyltransferase), IPR027408 (PNPase/RNase PH domain)	GO:0000175 (3'-5'-exoribonuclease activity), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004654 (polyribonucleotide nucleotidyltransferase activity), GO:0006396 (RNA processing), GO:0006402 (mRNA catabolic process)
Niben101Scf07599g00010.1	AT4G12480.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=168	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf06394g02003.1	sp|P86809|NLTP2_APIGA	***-	Non-specific lipid-transfer protein 2	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf07798g01013.1	sp|F4I7L1|TRB4_ARATH	--**	Telomere repeat-binding factor 4	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00109g05018.1	sp|Q69ZU8|ANKR6_MOUSE	*-*-	Ankyrin repeat domain-containing protein 6	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf03861g02011.1	AT3G18620.1	****	DHHC-type zinc finger family protein LENGTH=345	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf07182g01009.1	sp|Q86MW9|SINA_SCHMA	****	E3 ubiquitin-protein ligase sina	IPR004162 (E3 ubiquitin-protein ligase SINA like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf00640g00014.1	sp|Q9LXT3|MBF1B_ARATH	***-	Multiprotein-bridging factor 1b	IPR010982 (Lambda repressor-like, DNA-binding domain), IPR013729 (Multiprotein bridging factor 1, N-terminal)	GO:0003677 (DNA binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09989g00001.1	AT1G71050.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=152	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf07589g01004.1	sp|Q1PEZ8|FB117_ARATH	-**-	F-box protein	IPR005174 (Protein of unknown function DUF295)	
Niben101Scf04941g03015.1	sp|Q8RWS8|PP199_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07260g01018.1	sp|O74347|COXM1_SCHPO	-**-	COX assembly mitochondrial protein 1	IPR013892 (Cytochrome c oxidase biogenesis protein Cmc1-like)	
Niben101Scf00390g00006.1	gb|KEH25234.1|	***-	late embryogenesis abundant protein (LEA) family protein [Medicago truncatula]		
Niben101Scf08341g05015.1	AT4G32600.1	*-*-	RING/U-box superfamily protein LENGTH=453		
Niben101Scf08263g01016.1	sp|Q9FNP8|RS193_ARATH	***-	40S ribosomal protein S19-3	IPR001266 (Ribosomal protein S19e), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02329g00003.1	sp|Q9DD16|NUD22_MOUSE	***-	Nucleoside diphosphate-linked moiety X motif 22	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf02902g00007.1	sp|P84227|H32_BOVIN	***-	Histone H3.2	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf01534g02012.1	emb|CDY25844.1|	--*-	BnaA05g14350D [Brassica napus]		
Niben101Scf05469g01014.1	sp|Q7XR52|CYSP1_ORYSJ	*-**	Cysteine protease 1	IPR013128 (Peptidase C1A)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00757g02006.1	AT3G17430.1	***-	Nucleotide-sugar transporter family protein LENGTH=375	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf05409g00002.1	ref|WP_006041652.1|	****	peptidase S41 [Synechococcus sp. WH 7805] gb|EAR17961.1| carboxyl-terminal processing protease [Synechococcus sp. WH 7805]	IPR001478 (PDZ domain), IPR029045 (ClpP/crotonase-like domain)	GO:0005515 (protein binding), GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf04403g03001.1	sp|F1NBT0|STK10_CHICK	*-**	Serine/threonine-protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06156g04011.1	AT4G36590.1	***-	MADS-box transcription factor family protein LENGTH=248	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf15346g00009.1	sp|Q40901|DEF_PETIN	***-	Defensin-like protein	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf02734g01004.1	sp|B3H7G2|URM12_ARATH	***-	Ubiquitin-related modifier 1 homolog 2	IPR012675 (Beta-grasp domain), IPR015221 (Ubiquitin-related modifier 1)	GO:0005737 (cytoplasm), GO:0034227 (tRNA thio-modification)
Niben101Scf00085g00009.1	sp|P0CQ26|ATP23_CRYNJ	***-	Mitochondrial inner membrane protease ATP23	IPR019165 (Peptidase M76, ATP23)	GO:0004222 (metalloendopeptidase activity)
Niben101Scf02622g08010.1	sp|Q9KDD4|MTNN_BACHD	*-*-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	IPR018017 (Nucleoside phosphorylase)	GO:0003824 (catalytic activity), GO:0009116 (nucleoside metabolic process)
Niben101Scf15739g00010.1	sp|P81394|MYB15_ANTMA	*-*-	Myb-related protein 315	IPR009057 (Homeodomain-like)	
Niben101Scf05963g00013.1	sp|Q8HY03|CD209_HYLLA	--*-	CD209 antigen		
Niben101Scf04432g06014.1			Unknown protein		
Niben101Scf01006g02006.1	sp|P0CG54|UBB_CAVPO	***-	Polyubiquitin-B	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf06998g01005.1	sp|Q99PV0|PRP8_MOUSE	*-**	Pre-mRNA-processing-splicing factor 8	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR012337 (Ribonuclease H-like domain), IPR012591 (PRO8NT domain), IPR012592 (PROCN domain), IPR012984 (PROCT domain), IPR019580 (Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding), IPR021983 (PRP8 domain IV core), IPR027652 (Pre-mRNA-processing-splicing factor 8)	GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005681 (spliceosomal complex), GO:0017070 (U6 snRNA binding)
Niben101Scf01236g00014.1	sp|Q5HNR8|RELA_STAEQ	*-*-	GTP pyrophosphokinase	IPR007685 (RelA/SpoT), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding), GO:0015969 (guanosine tetraphosphate metabolic process)
Niben101Scf00170g04004.1	AT1G75335.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=96		
Niben101Scf08195g04009.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf01727g03001.1	AT5G39865.1	***-	Glutaredoxin family protein LENGTH=390	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03735g07013.1	sp|Q8W4G6|CRK15_ARATH	*-**	Cysteine-rich receptor-like protein kinase 15	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01382g02001.1	sp|P34931|HS71L_HUMAN	***-	Heat shock 70 kDa protein 1-like	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf05417g01008.1	AT2G45850.1	***-	AT hook motif DNA-binding family protein LENGTH=348	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf00369g02013.1			Unknown protein		
Niben101Scf00799g02005.1	sp|Q98I99|MNTH_RHILO	****	Divalent metal cation transporter MntH	IPR001046 (NRAMP family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01146g04003.1	gb|ABA95265.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf05676g06009.1	gb|AES86343.2|	*-*-	exocyst complex component 84B [Medicago truncatula]		
Niben101Scf09296g01009.1	AT5G19450.1	****	calcium-dependent protein kinase 19 LENGTH=533	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05898g00001.1	sp|Q84W80|FBL42_ARATH	*-*-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02525g04006.1	ref|WP_017310080.1|	***-	fibrillin [Fischerella sp. PCC 9339]	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf38184g00006.1	sp|P83326|PMEI_ACTDE	****	Pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf01328g02008.1	sp|Q9C810|Y1342_ARATH	***-	PHD finger protein	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf15536g02007.1	sp|P40024|ARB1_YEAST	****	ABC transporter ATP-binding protein ARB1	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf05206g03015.1	AT5G02460.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=399	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00988g06018.1	sp|P93397|GBB1_TOBAC	*-*-	Guanine nucleotide-binding protein subunit beta-1		
Niben101Scf03468g02010.1	AT5G11870.2	***-	Alkaline phytoceramidase (aPHC) LENGTH=270	IPR008901 (Ceramidase)	GO:0006672 (ceramide metabolic process), GO:0016021 (integral component of membrane), GO:0016811 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides)
Niben101Scf03396g00005.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf17776g00008.1	sp|Q38871|CDPK5_ARATH	****	Calcium-dependent protein kinase 5	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01283g02002.1	AT4G14210.1	***-	phytoene desaturase 3 LENGTH=566	IPR014102 (Phytoene desaturase), IPR016040 (NAD(P)-binding domain)	GO:0016117 (carotenoid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0055114 (oxidation-reduction process)
Niben101Scf02319g00002.1	sp|Q3SZX8|CCD25_BOVIN	***-	Coiled-coil domain-containing protein 25	IPR008532 (Domain of unknown function DUF814)	
Niben101Scf06840g00013.1	sp|B1XJT2|RL16_SYNP2	*-*-	50S ribosomal protein L16	IPR000114 (Ribosomal protein L16), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf00127g03004.1	sp|Q9SXD8|PPR90_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf21960g01003.1	sp|Q2YXR3|MIAA_STAAB	*-**	tRNA dimethylallyltransferase	IPR002627 (tRNA isopentenyltransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf03894g00003.1	sp|Q41365|PRS7_SPIOL	***-	26S protease regulatory subunit 7	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02074g02063.1	sp|Q2K9S5|NUOH1_RHIEC	*-*-	NADH-quinone oxidoreductase subunit H 1	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf01545g01003.1	emb|CDX80033.1|	*-*-	BnaA05g01230D [Brassica napus]		
Niben101Scf00199g01002.1	sp|Q0WRX3|SCP40_ARATH	****	Serine carboxypeptidase-like 40	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf07508g10005.1	AT5G62460.1	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=307	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022143 (Protein of unknown function DUF3675)	GO:0008270 (zinc ion binding)
Niben101Scf00207g05007.1	gb|EMT08720.1|	*-**	Cellular nucleic acid-binding protein [Aegilops tauschii]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf01811g01002.1			Unknown protein		
Niben101Scf02459g10008.1	sp|Q6DRD9|ABHDB_DANRE	-**-	Alpha/beta hydrolase domain-containing protein 11	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01073g01008.1	sp|Q06327|LOX1_ARATH	*-*-	Linoleate 9S-lipoxygenase 1	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00637g05012.1	emb|CDY42132.1|	***-	BnaC05g40870D [Brassica napus]	IPR019149 (Protein of unknown function DUF2048), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf10073g00021.1	sp|P50872|TRPE_AZOBR	*-*-	Anthranilate synthase	IPR029062 (Class I glutamine amidotransferase-like)	GO:0008152 (metabolic process)
Niben101Scf00568g04013.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf07695g00001.1	sp|Q54M20|TTC4_DICDI	*-*-	Tetratricopeptide repeat protein 4 homolog	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02538g07007.1	sp|P50003|ATPB_PRODI	*-**	ATP synthase subunit beta	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR024034 (ATPase, F1 complex beta subunit/V1 complex, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf04329g06017.1	sp|Q9FMR1|RGAP1_ARATH	***-	Rho GTPase-activating protein 1	IPR000095 (CRIB domain), IPR008936 (Rho GTPase activation protein)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf06822g02001.1	AT2G33620.1	*-**	AT hook motif DNA-binding family protein LENGTH=351	IPR005175 (Domain of unknown function DUF296), IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Scf03268g09012.1	AT1G72480.1	***-	Lung seven transmembrane receptor family protein LENGTH=509	IPR009637 (Transmembrane receptor, eukaryota)	GO:0016021 (integral component of membrane)
Niben101Scf07436g00016.1	sp|Q6P0N0|M18BP_HUMAN	--*-	Mis18-binding protein 1	IPR015216 (SANT associated)	
Niben101Scf17559g00005.1			Unknown protein		
Niben101Scf01552g03003.1			Unknown protein		
Niben101Scf03679g03009.1	AT5G51100.1	****	Fe superoxide dismutase 2 LENGTH=305	IPR001189 (Manganese/iron superoxide dismutase)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03731g01008.1	AT4G27390.1	*-*-	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=235		
Niben101Scf00602g00010.1			Unknown protein		
Niben101Scf07793g02022.1	sp|B0K735|HIS8_THEP3	*-**	Histidinol-phosphate aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016846 (carbon-sulfur lyase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf10322g01010.1	AT1G69510.1	*-*-	cAMP-regulated phosphoprotein 19-related protein LENGTH=137	IPR006760 (Endosulphine)	
Niben101Scf23108g00011.1	sp|Q32PE9|LSM3_BOVIN	***-	U6 snRNA-associated Sm-like protein LSm3	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf03150g00002.1	sp|P55956|ASP3_CAEEL	-***	Aspartic protease 3	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04931g01001.1	sp|Q7XJ98|KATAM_ARATH	***-	Xyloglucan galactosyltransferase KATAMARI1	IPR004263 (Exostosin-like)	
Niben101Scf12308g00001.1	sp|Q5BK48|TTC5_RAT	***-	Tetratricopeptide repeat protein 5	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03573g00017.1	sp|Q9ZCP3|UBIE_RICPR	*-**	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf02929g05087.1	sp|Q68VV6|NUOM_RICTY	*-*-	NADH-quinone oxidoreductase subunit M	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf02700g01006.1	AT5G19900.1	*-*-	PRLI-interacting factor, putative LENGTH=494		
Niben101Scf00949g06004.1	sp|O59852|INV1_SCHPO	--*-	Invertase		
Niben101Scf05566g02007.1	AT1G53350.1	***-	Disease resistance protein (CC-NBS-LRR class) family LENGTH=927	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf05188g03027.1	AT5G23280.1	***-	TCP family transcription factor LENGTH=250	IPR005333 (Transcription factor, TCP)	
Niben101Scf01453g00001.1	gb|AAU90303.2|	***-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf04686g00007.1	sp|Q9QY80|HACD1_MOUSE	*-*-	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1	IPR007482 (Protein-tyrosine phosphatase-like, PTPLA)	
Niben101Scf00215g06004.1	sp|Q944N1|LHP1_SOLLC	***-	Chromo domain protein LHP1	IPR016197 (Chromo domain-like), IPR023779 (Chromo domain, conserved site)	GO:0005634 (nucleus)
Niben101Scf00801g00014.1	sp|P90522|ALG1_DICDI	***-	Chitobiosyldiphosphodolichol beta-mannosyltransferase	IPR026051 (Asparagine-linked glycosylation protein 1-like)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf06726g00022.1	AT3G18870.1	****	Mitochondrial transcription termination factor family protein LENGTH=274	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf13411g02001.1	sp|C5D6U5|MENE_GEOSW	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf10053g00024.1	sp|A1RRX4|SYS_PYRIL	****	Serine--tRNA ligase	IPR002317 (Serine-tRNA ligase, type1)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004828 (serine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006434 (seryl-tRNA aminoacylation)
Niben101Scf00953g08017.1	sp|Q9FR53|TOR_ARATH	*-**	Serine/threonine-protein kinase TOR	IPR003152 (PIK-related kinase, FATC), IPR011009 (Protein kinase-like domain)	GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf01905g00001.1	sp|Q9FYQ8|TMN11_ARATH	***-	Transmembrane 9 superfamily member 11	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf02418g00012.1	sp|Q8N9R8|SCAI_HUMAN	***-	Protein SCAI	IPR022709 (Protein SCAI)	GO:0003714 (transcription corepressor activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf14163g00002.1	sp|Q8W246|ZIP7_ARATH	****	Zinc transporter 7	IPR003689 (Zinc/iron permease)	GO:0005385 (zinc ion transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport), GO:0071577 (zinc ion transmembrane transport)
Niben101Scf01975g03009.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13833g03003.1	AT3G26210.1	***-	cytochrome P450, family 71, subfamily B, polypeptide 23 LENGTH=501	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00914g00004.1	sp|Q9S8M0|LECT_SOLTU	--**	Chitin-binding lectin 1	IPR001002 (Chitin-binding, type 1)	GO:0008061 (chitin binding)
Niben101Scf01192g00009.1	sp|Q9M0X5|CRK25_ARATH	*-**	Cysteine-rich receptor-like protein kinase 25	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02937g00003.1	sp|Q9STV0|GWD2_ARATH	***-	Alpha-glucan water dikinase 2	IPR002192 (Pyruvate phosphate dikinase, PEP/pyruvate-binding), IPR013816 (ATP-grasp fold, subdomain 2)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0016301 (kinase activity), GO:0016310 (phosphorylation)
Niben101Scf04400g04001.1	ref|XP_002527616.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF34755.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf13942g00017.1	emb|CDY68915.1|	*-**	BnaCnng61050D [Brassica napus] emb|CDX94781.1| BnaC07g17900D [Brassica napus]	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00914g01001.1	sp|Q664I3|GLGX_YERPS	***-	Glycogen debranching enzyme	IPR013780 (Glycosyl hydrolase, family 13, all-beta), IPR013783 (Immunoglobulin-like fold), IPR014756 (Immunoglobulin E-set), IPR015902 (Glycoside hydrolase, family 13), IPR017853 (Glycoside hydrolase superfamily)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0043169 (cation binding)
Niben101Scf05697g01008.1	sp|O66119|ODP2_ZYMMO	*-*-	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	IPR000089 (Biotin/lipoyl attachment)	
Niben101Scf08318g00005.1	sp|P29535|1A14_SOLLC	*-*-	1-aminocyclopropane-1-carboxylate synthase 4		
Niben101Scf01222g02010.1			Unknown protein		
Niben101Scf02074g02064.1			Unknown protein		
Niben101Scf03863g00004.1			Unknown protein		
Niben101Scf00892g00003.1	gb|AES65140.2|	*-*-	VQ motif protein [Medicago truncatula]	IPR008889 (VQ)	
Niben101Scf06872g01004.1	sp|Q9T072|BH025_ARATH	*-*-	Transcription factor bHLH25	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05081g01018.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10994g00008.1	ref|XP_007042620.1|	*-*-	Phototropic-responsive NPH3 family protein isoform 1 [Theobroma cacao] gb|EOX98451.1| Phototropic-responsive NPH3 family protein isoform 1 [Theobroma cacao]		
Niben101Scf00783g00006.1	sp|Q54TV2|ABCG5_DICDI	*-*-	ABC transporter G family member 5	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03482g01011.1	sp|Q9FUT0|GSTU9_ARATH	***-	Glutathione S-transferase U9	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf05955g03047.1	sp|P56601|PPOX_MYXXA	****	Protoporphyrinogen oxidase	IPR004572 (Protoporphyrinogen oxidase), IPR027418 (Protoporphyrinogen oxidase, C-terminal domain)	GO:0004729 (oxygen-dependent protoporphyrinogen oxidase activity), GO:0006779 (porphyrin-containing compound biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03930g04020.1	ref|XP_007023883.1|	*-*-	Galact isoform 1 [Theobroma cacao]	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00428g01019.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf02253g08006.1	AT5G15050.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=434	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf09584g00044.1	gb|KEJ94534.1|	*-*-	ABC transporter substrate-binding protein [Sulfitobacter sp. H3]	IPR010839 (Protein of unknown function DUF1446)	
Niben101Scf02155g02018.1	sp|A4G8D1|DNAJ_HERAR	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf04234g02012.1	sp|Q68CP9|ARID2_HUMAN	--*-	AT-rich interactive domain-containing protein 2	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf07829g04011.1	sp|Q9SN74|BH047_ARATH	***-	Transcription factor bHLH47	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf19975g00006.1			Unknown protein		
Niben101Scf01830g01023.1	AT5G50400.1	****	purple acid phosphatase 27 LENGTH=611	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf02074g04092.1	sp|O28059|SYV_ARCFU	--*-	Valine--tRNA ligase		
Niben101Scf03062g02024.1	sp|Q9FLB5|LAC12_ARATH	***-	Laccase-12	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01640g00005.1	AT5G58950.1	*-**	Protein kinase superfamily protein LENGTH=525	IPR011009 (Protein kinase-like domain), IPR020683 (Ankyrin repeat-containing domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08179g00002.1	sp|P48505|UCR11_SOLTU	***-	Ubiquinol-cytochrome c reductase complex 6.7 kDa protein		
Niben101Scf03739g06016.1	sp|O81514|GPTP1_ARATH	--*-	Glucose-6-phosphate/phosphate-translocator-like protein 1		
Niben101Scf02573g03004.1	sp|Q8LGA1|CCD41_ARATH	***-	Cyclin-D4-1	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf02074g01060.1	sp|Q2JX57|ATPB_SYNJA	*-**	ATP synthase subunit beta	IPR005722 (ATPase, F1 complex, beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015986 (ATP synthesis coupled proton transport), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Scf00167g05001.1	sp|Q57604|MJK1_METJA	--**	Potassium channel protein 1	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR013099 (Two pore domain potassium channel domain), IPR020683 (Ankyrin repeat-containing domain)	GO:0005249 (voltage-gated potassium channel activity), GO:0005515 (protein binding), GO:0006813 (potassium ion transport), GO:0016020 (membrane)
Niben101Scf00222g02011.1	gb|AID21636.1|	--*-	At4g21420p-like protein [Arabidopsis lyrata]		
Niben101Scf10465g02006.1	sp|Q8L4H0|WEE1_ARATH	*-*-	Wee1-like protein kinase		
Niben101Scf06525g03015.1	gb|KEH22373.1|	--*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf06101g00010.1	sp|Q8LGG8|USPAL_ARATH	****	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf03747g02006.1	ref|NP_001066850.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf14144g00024.1	sp|Q5SMI4|RL393_ORYSJ	***-	60S ribosomal protein L39-3	IPR000077 (Ribosomal protein L39e), IPR023626 (Ribosomal protein L39e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Ctg07627g00003.1	gb|KEH17984.1|	*-*-	fatty acid hydroxylase superfamily protein [Medicago truncatula]		
Niben101Scf02922g01012.1	sp|Q9BY12|SCAPE_HUMAN	*-*-	S phase cyclin A-associated protein in the endoplasmic reticulum		
Niben101Scf09338g05011.1	AT5G65170.1	*-*-	VQ motif-containing protein LENGTH=362	IPR008889 (VQ)	
Niben101Scf01147g05011.1	sp|Q8S3D1|BH068_ARATH	*-*-	Transcription factor bHLH68	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01051g09028.1	AT1G79740.1	***-	hAT transposon superfamily LENGTH=651	IPR007021 (Domain of unknown function DUF659), IPR008906 (HAT dimerisation domain, C-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0046983 (protein dimerization activity)
Niben101Scf05234g01003.1	AT3G45670.1	***-	Protein kinase superfamily protein LENGTH=379	IPR011009 (Protein kinase-like domain)	
Niben101Scf00633g00005.1	sp|Q13247|SRSF6_HUMAN	--*-	Serine/arginine-rich splicing factor 6	IPR007201 (RNA recognition motif 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf11380g03009.1	AT1G02910.1	***-	tetratricopeptide repeat (TPR)-containing protein LENGTH=453	IPR011990 (Tetratricopeptide-like helical domain), IPR021883 (Protein of unknown function DUF3493)	GO:0005515 (protein binding)
Niben101Scf00248g02026.1	sp|Q68Y49|CIPKJ_ORYSJ	*-**	CBL-interacting protein kinase 19	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf37585g00003.1	ref|NP_188895.1|	****	GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] dbj|BAB01471.1| alanine acetyl transferase-like protein [Arabidopsis thaliana] gb|ABN04781.1| [Arabidopsis thaliana] gb|AEE76653.1| GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf03502g00010.1	ref|XP_002519145.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF43356.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf36162g00003.1	AT4G16580.1	***-	Protein phosphatase 2C family protein LENGTH=467	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf07231g04011.1	sp|Q9C554|EXPA1_ARATH	***-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf01968g01003.1	AT1G01710.1	****	Acyl-CoA thioesterase family protein LENGTH=427	IPR001810 (F-box domain), IPR003703 (Acyl-CoA thioesterase), IPR014710 (RmlC-like jelly roll fold), IPR015916 (Galactose oxidase, beta-propeller), IPR029069 (HotDog domain)	GO:0005515 (protein binding), GO:0006637 (acyl-CoA metabolic process), GO:0047617 (acyl-CoA hydrolase activity)
Niben101Scf02210g09015.1	AT2G26890.1	*-*-	DNAJ heat shock N-terminal domain-containing protein LENGTH=2554		
Niben101Scf27562g00010.1			Unknown protein		
Niben101Scf06387g02003.1	sp|A7HY42|NUOH_PARL1	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf02749g00011.1	sp|Q940X7|RBX1A_ARATH	***-	RING-box protein 1a	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf04036g04008.1	AT3G14940.1	****	phosphoenolpyruvate carboxylase 3 LENGTH=968	IPR021135 (Phosphoenolpyruvate carboxylase)	GO:0003824 (catalytic activity), GO:0006099 (tricarboxylic acid cycle), GO:0008964 (phosphoenolpyruvate carboxylase activity), GO:0015977 (carbon fixation)
Niben101Scf01107g00007.1			Unknown protein		
Niben101Scf07045g00011.1	sp|P49382|ADT_KLULA	*-*-	ADP,ATP carrier protein	IPR002067 (Mitochondrial carrier protein)	GO:0055085 (transmembrane transport)
Niben101Scf23248g00018.1	AT1G76620.1	***-	Protein of unknown function, DUF547 LENGTH=527	IPR006869 (Domain of unknown function DUF547), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	
Niben101Scf04903g01016.1	sp|Q9M0X5|CRK25_ARATH	*-**	Cysteine-rich receptor-like protein kinase 25	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08341g03010.1	AT4G17486.1	***-	PPPDE putative thiol peptidase family protein LENGTH=224	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf00453g07011.1	AT5G46800.1	***-	Mitochondrial substrate carrier family protein LENGTH=300	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf08047g02011.1	sp|A2ZDX9|DHR21_ORYSI	--**	Water stress-inducible protein Rab21	IPR000167 (Dehydrin)	GO:0006950 (response to stress), GO:0009415 (response to water)
Niben101Scf04240g02013.1	sp|Q09442|SF3B4_CAEEL	*-*-	Splicing factor 3B subunit 4	IPR006529 (U2 snRNP auxilliary factor, large subunit, splicing factor), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0006397 (mRNA processing)
Niben101Scf06436g01007.1	sp|Q6H7U5|CIPKQ_ORYSJ	*-**	CBL-interacting protein kinase 26	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11940g00012.1	AT1G16690.1	***-	Enhancer of polycomb-like transcription factor protein LENGTH=439	IPR024943 (Enhancer of polycomb protein)	GO:0032777 (Piccolo NuA4 histone acetyltransferase complex), GO:0035267 (NuA4 histone acetyltransferase complex)
Niben101Scf10650g01009.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR018392 (LysM domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00751g06004.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00128g05002.1	AT5G15050.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=434	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf01734g01039.1	sp|B0CAT4|ATPE_ACAM1	****	ATP synthase epsilon chain	IPR001469 (ATPase, F1 complex, delta/epsilon subunit)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf02891g04009.1	sp|Q55738|GYRA_SYNY3	****	DNA gyrase subunit A	IPR013760 (DNA topoisomerase, type IIA-like domain), IPR024946 (Arginine repressor C-terminal-like domain)	GO:0003677 (DNA binding), GO:0003916 (DNA topoisomerase activity), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0006259 (DNA metabolic process), GO:0006265 (DNA topological change)
Niben101Scf08936g05006.1	AT4G24970.1	*-*-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=707		
Niben101Scf00843g00003.1	dbj|BAD44345.1|	--*-	retrotransposon like protein [Arabidopsis thaliana]		
Niben101Scf10015g09020.1	sp|Q3J8S2|RL29_NITOC	-**-	50S ribosomal protein L29	IPR001854 (Ribosomal protein L29)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03087g00002.1	gb|EMO77019.1|	-**-	alpha/beta hydrolase family protein [Leptospira kirschneri str. 200801925]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04992g01007.1			Unknown protein		
Niben101Scf01834g04007.1	sp|P49215|RS17_SOLLC	***-	40S ribosomal protein S17	IPR001210 (Ribosomal protein S17e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04621g00011.1	AT5G04460.1	***-	RING/U-box superfamily protein LENGTH=863	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02375g03001.1	sp|Q5R5P3|THNS1_PONAB	--*-	Threonine synthase-like 1		
Niben101Scf07825g04013.1	sp|Q39013|NAC2_ARATH	*-*-	NAC domain-containing protein 2	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04145g00012.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09248g07003.1	ref|XP_007033568.1|	***-	Mitochondrial Rho GTPase 2 isoform 1 [Theobroma cacao] gb|EOY04494.1| Mitochondrial Rho GTPase 2 isoform 1 [Theobroma cacao]		
Niben101Scf02915g05003.1	sp|O48700|PUB6_ARATH	*-*-	U-box domain-containing protein 6		
Niben101Scf11684g03003.1	AT5G41650.1	***-	Lactoylglutathione lyase / glyoxalase I family protein LENGTH=117	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf10132g00012.1	sp|P19173|COX5C_IPOBA	***-	Cytochrome c oxidase subunit 5C		
Niben101Scf02268g06019.1	sp|Q14694|UBP10_HUMAN	*-**	Ubiquitin carboxyl-terminal hydrolase 10	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf03189g01011.1			Unknown protein		
Niben101Scf01272g01024.1	ref|XP_002518781.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF43706.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf02249g02001.1	sp|Q9LS46|ALMT9_ARATH	****	Aluminum-activated malate transporter 9	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf05272g02008.1	sp|Q39247|2ABB_ARATH	****	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	IPR000009 (Protein phosphatase 2A, regulatory subunit PR55), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0000159 (protein phosphatase type 2A complex), GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf07191g02025.1	sp|B0KJG6|CLPP_PSEPG	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03814g00003.1			Unknown protein		
Niben101Scf00614g00023.1	sp|A5W635|CLPP_PSEP1	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00837g12024.1	ref|XP_003606050.1|	--*-	A subunit of NADH dehydrogenase [Medicago truncatula] gb|AES88247.1| proton-translocating NADH-quinone oxidoreductase, protein [Medicago truncatula]		
Niben101Scf04172g02006.1	sp|Q7NFW6|PSAE_GLOVI	*-**	Photosystem I reaction center subunit IV	IPR003375 (Photosystem I PsaE, reaction centre subunit IV)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf04362g07006.1	sp|Q9SCV9|BGAL3_ARATH	--*-	Beta-galactosidase 3		
Niben101Scf19336g00004.1	sp|Q08507|ACCO3_PETHY	***-	1-aminocyclopropane-1-carboxylate oxidase 3	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf07036g03002.1	sp|Q72MG4|IPYR_LEPIC	****	Inorganic pyrophosphatase	IPR008162 (Inorganic pyrophosphatase)	GO:0000287 (magnesium ion binding), GO:0004427 (inorganic diphosphatase activity), GO:0005737 (cytoplasm), GO:0006796 (phosphate-containing compound metabolic process)
Niben101Scf06156g02003.1	gb|KEH28660.1|	*-*-	30S ribosomal protein S15 [Medicago truncatula]		
Niben101Scf03141g08015.1	sp|Q8VZ49|ADHL4_ARATH	***-	Alcohol dehydrogenase-like 4	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01987g00015.1	sp|P27494|CB23_TOBAC	***-	Chlorophyll a-b binding protein 36, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf07757g00001.1	sp|Q40561|IP21_TOBAC	****	Proteinase inhibitor type-2	IPR003465 (Proteinase inhibitor I20, Pin2)	GO:0004867 (serine-type endopeptidase inhibitor activity)
Niben101Scf00854g07049.1	sp|Q6ENH4|PSAA_ORYNI	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf02027g02003.1	sp|Q2JL51|GATA_SYNJB	*-*-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf03492g01004.1	sp|Q99PV0|PRP8_MOUSE	****	Pre-mRNA-processing-splicing factor 8	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR012337 (Ribonuclease H-like domain), IPR012591 (PRO8NT domain), IPR012592 (PROCN domain), IPR012984 (PROCT domain), IPR019580 (Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding), IPR019581 (Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding), IPR019582 (RNA recognition motif, spliceosomal PrP8), IPR021983 (PRP8 domain IV core), IPR027652 (Pre-mRNA-processing-splicing factor 8)	GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005515 (protein binding), GO:0005681 (spliceosomal complex), GO:0017070 (U6 snRNA binding), GO:0030623 (U5 snRNA binding)
Niben101Scf09698g01004.1	sp|P35336|PGLR_ACTDE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf34252g00005.1	sp|O65202|ACOX1_ARATH	*-**	Peroxisomal acyl-coenzyme A oxidase 1	IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal)	GO:0003997 (acyl-CoA oxidase activity), GO:0005777 (peroxisome), GO:0006635 (fatty acid beta-oxidation), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0055114 (oxidation-reduction process)
Niben101Scf05183g00001.1	AT2G43970.1	*-**	RNA-binding protein LENGTH=545	IPR002344 (Lupus La protein), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0006396 (RNA processing), GO:0030529 (ribonucleoprotein complex)
Niben101Scf07214g00017.1	AT2G41770.1	***-	Protein of unknown function (DUF288) LENGTH=771	IPR005049 (Protein of unknown function DUF288)	
Niben101Scf01077g04011.1	sp|Q9LT67|BH113_ARATH	*-*-	Transcription factor bHLH113	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00090g12004.1	sp|O15488|GLYG2_HUMAN	*-*-	Glycogenin-2	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf07965g01006.1			Unknown protein		
Niben101Scf13856g00012.1	AT2G37420.1	****	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00486g01013.1	sp|Q2W2I2|RPOC_MAGSA	--*-	DNA-directed RNA polymerase subunit beta'		
Niben101Scf00549g01001.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf02015g03007.1	AT2G41970.1	****	Protein kinase superfamily protein LENGTH=365	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00734g03002.1	ref|XP_002524585.1|	--**	nucleic acid binding protein, putative [Ricinus communis] gb|EEF37793.1| nucleic acid binding protein, putative [Ricinus communis]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf05368g01011.1	sp|O80932|EXPA3_ARATH	***-	Expansin-A3	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf00317g06025.1	sp|Q84LH3|WEX_ARATH	****	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf01150g02002.1	sp|Q9FLS0|FB253_ARATH	*-*-	F-box protein		
Niben101Scf06884g02004.1	AT4G01810.1	*-*-	Sec23/Sec24 protein transport family protein LENGTH=880	IPR002035 (von Willebrand factor, type A)	
Niben101Scf01131g00005.1	ref|XP_002533162.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29221.1| conserved hypothetical protein [Ricinus communis]	IPR007513 (Uncharacterised protein family SERF)	
Niben101Scf09552g01001.1	sp|B4S6P7|DNAK_PROA2	***-	Chaperone protein DnaK	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf05942g01011.1	AT3G18290.1	*-*-	zinc finger protein-related LENGTH=1254	IPR012312 (Haemerythrin/HHE cation-binding motif)	
Niben101Scf02552g03024.1	AT1G76010.1	*-**	Alba DNA/RNA-binding protein LENGTH=350	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Scf00747g00001.1	sp|Q9Z8S6|SURE_CHLPN	--*-	5'-nucleotidase SurE	IPR002828 (Survival protein SurE-like phosphatase/nucleotidase)	GO:0016787 (hydrolase activity)
Niben101Scf02829g03017.1	gb|KEH23814.1|	***-	auxin canalization protein [Medicago truncatula]	IPR008546 (Domain of unknown function DUF828), IPR013666 (Pleckstrin-like, plant)	
Niben101Scf00571g04003.1	sp|Q9FQ27|TPSGB_SOLHA	*-*-	(E,E)-germacrene B synthase		
Niben101Scf03371g00009.1	ref|XP_002869709.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH45968.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf00104g00003.1	sp|O49686|PYR1_ARATH	***-	Abscisic acid receptor PYR1	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf07638g02007.1	sp|Q5VRD1|IAA1_ORYSJ	--*-	Auxin-responsive protein IAA1	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf05137g00002.1	AT2G37820.1	***-	Cysteine/Histidine-rich C1 domain family protein LENGTH=290		
Niben101Scf00854g09072.1	sp|P27754|RT03_OENBE	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf01817g02009.1	emb|CDX94210.1|	***-	BnaC07g38440D [Brassica napus]	IPR010605 (Protein of unknown function DUF1191)	
Niben101Scf08134g02011.1	sp|O82352|RTNLE_ARATH	***-	Reticulon-like protein B5	IPR003388 (Reticulon), IPR018819 (Protein of unknown function DUF2418)	
Niben101Scf06435g03022.1			Unknown protein		
Niben101Scf01037g04009.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07586g02004.1	gb|KEH18264.1|	--**	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf02181g00002.1	sp|A7H9U1|NUON_ANADF	*-*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf09767g00003.1	AT5G12460.1	***-	Protein of unknown function (DUF604) LENGTH=441	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf02665g02008.1	sp|Q4VCS5|AMOT_HUMAN	--*-	Angiomotin		
Niben101Scf01953g00003.1	AT2G46690.1	***-	SAUR-like auxin-responsive protein family LENGTH=121	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01189g04025.1	AT1G65690.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=252	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf06105g01001.1	sp|P35685|RL7A_ORYSJ	***-	60S ribosomal protein L7a	IPR018492 (Ribosomal protein L7Ae/L8/Nhp2 family), IPR029064 (50S ribosomal protein L30e-like)	GO:0030529 (ribonucleoprotein complex), GO:0042254 (ribosome biogenesis)
Niben101Scf12205g03017.1	sp|Q4UFP0|FEN1_THEAN	*-*-	Flap endonuclease 1	IPR006085 (XPG N-terminal), IPR006086 (XPG-I domain), IPR020045 (5'-3' exonuclease, C-terminal domain), IPR029060 (PIN domain-like)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0004518 (nuclease activity), GO:0006281 (DNA repair), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02665g14007.1	AT3G08600.1	*-*-	Protein of unknown function (DUF1191) LENGTH=316	IPR010605 (Protein of unknown function DUF1191), IPR013320 (Concanavalin A-like lectin/glucanase domain)	
Niben101Scf07340g00003.1	sp|P93530|C71D6_SOLCH	--*-	Cytochrome P450 71D6		
Niben101Scf05800g00005.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03194g01037.1	sp|P46903|NATA_BACSU	*-**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR026082 (ABC transporter A, ABCA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005215 (transporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity)
Niben101Scf04044g22005.1	sp|A1USR9|RL17_BARBK	***-	50S ribosomal protein L17	IPR000456 (Ribosomal protein L17)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00854g11048.1	sp|A5FZ52|ATPA_ACICJ	****	ATP synthase subunit alpha	IPR005294 (ATPase, F1 complex, alpha subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Ctg05921g00001.1	sp|Q9ZT50|RHA2A_ARATH	***-	E3 ubiquitin-protein ligase RHA2A		
Niben101Scf01227g04004.1	sp|O04202|EIF3F_ARATH	*-*-	Eukaryotic translation initiation factor 3 subunit F	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005515 (protein binding), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01795g17002.1	ref|XP_007048379.1|	***-	Coiled-coil domain-containing protein 18, putative isoform 1 [Theobroma cacao] gb|EOX92536.1| Coiled-coil domain-containing protein 18, putative isoform 1 [Theobroma cacao]		
Niben101Scf04495g00026.1	AT5G38840.1	***-	SMAD/FHA domain-containing protein LENGTH=735	IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf02972g09003.1	AT4G24130.1	***-	Protein of unknown function, DUF538 LENGTH=157	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf03129g07008.1			Unknown protein		
Niben101Scf00691g02026.1	sp|Q48GL0|CCMA_PSE14	*-**	Cytochrome c biogenesis ATP-binding export protein CcmA	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf20209g00009.1	sp|Q9FG35|TBR_ARATH	*-*-	Protein trichome birefringence	IPR026057 (PC-Esterase)	
Niben101Scf01249g03025.1	sp|P93163|GPA2_SOYBN	*-**	Guanine nucleotide-binding protein alpha-2 subunit	IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR011011 (Zinc finger, FYVE/PHD-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0007186 (G-protein coupled receptor signaling pathway), GO:0019001 (guanyl nucleotide binding), GO:0031683 (G-protein beta/gamma-subunit complex binding)
Niben101Scf03065g00008.1	sp|P60039|RL73_ARATH	***-	60S ribosomal protein L7-3	IPR005998 (Ribosomal protein L7, eukaryotic)	
Niben101Scf01025g02004.1	sp|Q43075|SPE1_PEA	****	Arginine decarboxylase	IPR000183 (Ornithine/DAP/Arg decarboxylase), IPR029066 (PLP-binding barrel)	GO:0003824 (catalytic activity), GO:0006527 (arginine catabolic process), GO:0008295 (spermidine biosynthetic process), GO:0008792 (arginine decarboxylase activity)
Niben101Scf02857g02001.1	sp|Q06086|TYDC2_PETCR	***-	Tyrosine decarboxylase 2	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01180g06001.1	gb|KEH22373.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf25165g00001.1	sp|Q9SKD3|OXA1L_ARATH	--*-	Mitochondrial inner membrane protein OXA1-like		
Niben101Scf01571g01010.1	AT1G73460.1	***-	Protein kinase superfamily protein LENGTH=1169		
Niben101Scf11234g00006.1			Unknown protein		
Niben101Ctg14204g00003.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03747g04013.1	sp|P00644|NUC_STAAU	--*-	Thermonuclease		
Niben101Scf06295g04001.1	sp|Q15782|CH3L2_HUMAN	****	Chitinase-3-like protein 2	IPR017853 (Glycoside hydrolase superfamily), IPR029070 (Chitinase insertion domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004568 (chitinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process)
Niben101Scf01006g04004.1	sp|Q6NKW9|E138_ARATH	***-	Glucan endo-1,3-beta-glucosidase 8	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03046g07021.1	emb|CDX69069.1|	***-	BnaC01g03840D [Brassica napus]	IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf03702g01005.1	sp|Q48BQ5|UBIA_PSE14	*-*-	4-hydroxybenzoate octaprenyltransferase		
Niben101Scf10157g03004.1	AT3G43210.1	****	ATP binding microtubule motor family protein LENGTH=938	IPR001752 (Kinesin motor domain), IPR021881 (Protein of unknown function DUF3490), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00360g00004.1			Unknown protein		
Niben101Scf04847g03015.1	AT4G26555.1	***-	FKBP-like peptidyl-prolyl cis-trans isomerase family protein LENGTH=207		
Niben101Scf00305g03001.1	sp|Q8VZA1|LAC11_ARATH	***-	Laccase-11	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05737g00005.1	sp|P38974|ETFA_PARDE	*-*-	Electron transfer flavoprotein subunit alpha	IPR029035 (DHS-like NAD/FAD-binding domain)	
Niben101Scf10054g00006.1	ref|XP_010093207.1|	--*-	Disease resistance protein [Morus notabilis] gb|EXB53705.1| Disease resistance protein [Morus notabilis]		
Niben101Scf01827g02008.1	sp|Q9JIC3|DCR1A_MOUSE	--*-	DNA cross-link repair 1A protein		
Niben101Scf03005g01002.1	AT5G65630.1	*-*-	global transcription factor group E7 LENGTH=590	IPR027353 (NET domain)	
Niben101Scf09004g02027.1	sp|O81020|NPC2_ARATH	***-	Non-specific phospholipase C2	IPR007312 (Phosphoesterase), IPR017850 (Alkaline-phosphatase-like, core domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf21698g00003.1	sp|Q84KJ6|AMT31_ORYSJ	*-**	Ammonium transporter 3 member 1	IPR001905 (Ammonium transporter), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf05316g02006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05368g02006.1	ref|XP_007026981.1|	--*-	Far-red elongated hypocotyl 1, putative isoform 1 [Theobroma cacao] gb|EOY07483.1| Far-red elongated hypocotyl 1, putative isoform 1 [Theobroma cacao]		
Niben101Scf16022g04010.1	sp|Q54UK0|PLDA_DICDI	*-**	Phospholipase D A	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0004630 (phospholipase D activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0046470 (phosphatidylcholine metabolic process)
Niben101Scf06678g04011.1	sp|P32026|DEF_TOBAC	*-*-	Defensin-like protein	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf02544g01014.1	sp|Q7V5S8|ATPG_PROMM	*-**	ATP synthase gamma chain	IPR000131 (ATPase, F1 complex, gamma subunit), IPR023632 (ATPase, F1 complex, gamma subunit conserved site), IPR023633 (ATPase, F1 complex, gamma subunit domain)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf05307g03009.1	sp|A1JPL4|SYK_YERE8	*-**	Lysine--tRNA ligase	IPR004364 (Aminoacyl-tRNA synthetase, class II (D/K/N)), IPR012340 (Nucleic acid-binding, OB-fold), IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004824 (lysine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006430 (lysyl-tRNA aminoacylation)
Niben101Scf05134g03007.1			Unknown protein		
Niben101Scf03934g05002.1	sp|Q64092|TFE3_MOUSE	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00551g05001.1	sp|O04373|ILL4_ARATH	****	IAA-amino acid hydrolase ILR1-like 4	IPR002933 (Peptidase M20)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf02840g04006.1			Unknown protein		
Niben101Scf04610g01017.1	AT1G20960.1	*-*-	U5 small nuclear ribonucleoprotein helicase, putative LENGTH=2171	IPR004179 (Sec63 domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01146g02002.1	sp|O48844|PSD1A_ARATH	*-*-	26S proteasome non-ATPase regulatory subunit 1 homolog A		
Niben101Scf05839g00002.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03634g02011.1			Unknown protein		
Niben101Scf07017g00006.1	emb|CDY16294.1|	***-	BnaC01g23290D [Brassica napus]		
Niben101Scf00474g13008.1	ref|XP_003623432.1|	*-*-	Stachyose synthase [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283), IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf03255g03008.1	sp|Q39117|TGT2_ARATH	*-*-	Trihelix transcription factor GT-2	IPR017877 (Myb-like domain)	
Niben101Scf04403g00013.1	sp|P82789|DF181_ARATH	--*-	Defensin-like protein 181		
Niben101Scf01927g09002.1	sp|Q9FK16|AGP22_ARATH	***-	Arabinogalactan peptide 22	IPR009424 (Arabinogalactan peptide, AGP)	
Niben101Scf08419g00011.1	sp|Q8L716|U2A2B_ARATH	*-*-	Splicing factor U2af large subunit B	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Ctg09857g00002.1	gb|AIU50194.1|	*-*-	haloacid dehalogenase-like hydrolase superfamily protein, partial [Arabidopsis thaliana]		
Niben101Scf09101g03007.1	sp|O22922|RU2B1_ARATH	***-	U2 small nuclear ribonucleoprotein B''	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR024888 (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'')	GO:0000166 (nucleotide binding), GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0017069 (snRNA binding)
Niben101Scf09582g01022.1	sp|B3GS44|LRE_ARATH	***-	GPI-anchored protein LORELEI		
Niben101Scf08621g05011.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05566g08001.1	sp|Q8RXN0|AB11G_ARATH	*-*-	ABC transporter G family member 11	IPR013525 (ABC-2 type transporter)	GO:0016020 (membrane)
Niben101Scf01033g03005.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf08757g00006.1	ref|WP_015136562.1|	****	outer membrane protein/protective antigen OMA87 [N /protective antigen OMA87 [Nostoc sp. PCC 7524]	IPR000184 (Bacterial surface antigen (D15)), IPR005689 (Chloroplast envelope protein translocase, IAP75), IPR010827 (Surface antigen variable number)	GO:0006886 (intracellular protein transport), GO:0015450 (P-P-bond-hydrolysis-driven protein transmembrane transporter activity), GO:0019867 (outer membrane)
Niben101Scf18129g00004.1	ref|YP_009091709.1|	***-	orf109 (mitochondrion) [Panax ginseng] gb|AHJ81034.1| orf109 (mitochondrion) [Panax ginseng]		
Niben101Scf11469g00001.1	sp|Q7XJ98|KATAM_ARATH	***-	Xyloglucan galactosyltransferase KATAMARI1	IPR004263 (Exostosin-like)	
Niben101Scf02583g06003.1	sp|P84981|FENR_POPEU	--**	Ferredoxin--NADP reductase, chloroplastic	IPR001433 (Oxidoreductase FAD/NAD(P)-binding), IPR015701 (Ferredoxin--NADP reductase), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04820g03011.1	emb|CDY20138.1|	***-	BnaA01g28640D [Brassica napus]		
Niben101Scf00332g12012.1	sp|O34392|YTRE_BACSU	****	ABC transporter ATP-binding protein YtrE	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf01033g02013.1	sp|Q76NT9|ACCO1_DICDI	*-*-	1-aminocyclopropane-1-carboxylate oxidase	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf13150g04019.1	emb|CDY45481.1|	*-*-	BnaCnng12400D [Brassica napus]		
Niben101Scf06385g02017.1	sp|Q8K4C0|FMO5_RAT	--**	Dimethylaniline monooxygenase [N-oxide-forming] 5	IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10438g02008.1	ref|NP_001190486.1|	--*-	Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana] gb|AED95567.1| Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]		
Niben101Scf06008g00011.1	ref|NP_001067105.1|	***-	product [Oryza sativa Japonica Group]	IPR009500 (Protein of unknown function DUF1118)	
Niben101Scf05811g01005.1	AT4G08850.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf06436g01001.1	sp|O64644|SAP18_ARATH	***-	Histone deacetylase complex subunit SAP18	IPR010516 (Sin3 associated polypeptide p18)	
Niben101Scf09876g01012.1	sp|Q9SH26|PP102_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf12868g00007.1			Unknown protein		
Niben101Scf28185g00014.1	AT3G01590.2	***-	Galactose mutarotase-like superfamily protein LENGTH=306	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf10031g04003.1			Unknown protein		
Niben101Scf07515g02014.1	sp|Q93WC4|IAA29_ARATH	*-*-	Auxin-responsive protein IAA29	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf00109g08007.1	sp|Q94KD3|VP52A_ARATH	*-*-	Vacuolar protein sorting-associated protein 52 A	IPR007258 (Vps52)	
Niben101Scf08751g00024.1	sp|O81081|LAC2_ARATH	***-	Laccase-2	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf13250g01003.1	AT5G48170.1	***-	F-box family protein LENGTH=157	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05011g01024.1			Unknown protein		
Niben101Scf00318g00016.1	sp|Q5B4E7|PPID_EMENI	*-**	Peptidyl-prolyl cis-trans isomerase D	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf00600g01014.1	sp|B4TMG8|AES_SALSV	--*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf03435g01007.1	gb|AES96430.2|	*-**	zinc ion-binding protein [Medicago truncatula]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf03628g00010.1	sp|O35790|PIGL_RAT	*-*-	N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase	IPR003737 (N-acetylglucosaminyl phosphatidylinositol deacetylase-related), IPR024078 (Putative deacetylase LmbE-like domain)	
Niben101Scf03461g00002.1	sp|Q9LQ16|PPR94_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00415g00001.1	sp|Q7YN83|MATK_DIOVR	--*-	Maturase K	IPR024942 (Maturase MatK, N-terminal domain)	
Niben101Scf00202g05001.1	sp|O67262|DCDA_AQUAE	****	Diaminopimelate decarboxylase	IPR000183 (Ornithine/DAP/Arg decarboxylase), IPR029066 (PLP-binding barrel)	GO:0003824 (catalytic activity), GO:0008836 (diaminopimelate decarboxylase activity), GO:0009089 (lysine biosynthetic process via diaminopimelate)
Niben101Scf01764g00014.1	ref|NP_001172419.1|	-**-	OsI_02421 [Oryza sativa Indica Group] dbj|BAH91149.1| [Oryza sativa Japonica Group]		
Niben101Scf09262g01018.1	sp|P05478|HSP16_SOYBN	*-*-	18.5 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf04777g06011.1	AT1G09910.1	*-*-	Rhamnogalacturonate lyase family protein LENGTH=675	IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf01385g12017.1	AT2G26550.1	****	heme oxygenase 2 LENGTH=354	IPR016053 (Haem oxygenase-like), IPR016951 (Haem oxygenase (decyclizing), plant)	GO:0004392 (heme oxygenase (decyclizing) activity), GO:0006788 (heme oxidation), GO:0055114 (oxidation-reduction process)
Niben101Scf02280g05005.1	sp|O04202|EIF3F_ARATH	****	Eukaryotic translation initiation factor 3 subunit F	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR024969 (Rpn11/EIF3F C-terminal domain), IPR027531 (Eukaryotic translation initiation factor 3 subunit F)	GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Ctg15073g00004.1	sp|Q9CQU8|IMP1L_MOUSE	****	Mitochondrial inner membrane protease subunit 1	IPR000223 (Peptidase S26A, signal peptidase I), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006508 (proteolysis), GO:0006627 (protein processing involved in protein targeting to mitochondrion), GO:0008233 (peptidase activity), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane)
Niben101Scf07231g02018.1	gb|AGZ19465.1|	***-	APOLLO [Boechera sp. IPK 11]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf24330g00001.1	sp|O24407|IAA16_ARATH	***-	Auxin-responsive protein IAA16	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf00305g05011.1	emb|CDX77961.1|	***-	BnaA09g31560D [Brassica napus]		
Niben101Scf04011g11005.1	AT1G61800.1	***-	glucose-6-phosphate/phosphate translocator 2 LENGTH=388	IPR004696 (Triose phosphate/phosphoenolpyruvate translocator), IPR004853 (Triose-phosphate transporter domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf09846g01020.1	gb|AAG53944.1|	****	quinone-oxidoreductase QR1 [Triphysaria versicolor]	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10022g00010.1	AT3G51380.1	***-	IQ-domain 20 LENGTH=103	IPR000048 (IQ motif, EF-hand binding site), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf00854g08072.1	sp|P38811|TRA1_YEAST	--*-	Transcription-associated protein 1		
Niben101Scf04118g01003.1	ref|XP_007014706.1|	*-*-	Lipase/lipooxygenase, putative isoform 2 [Theobroma cacao] gb|EOY32325.1| Lipase/lipooxygenase, putative isoform 2 [Theobroma cacao]		
Niben101Scf06928g00007.1	gb|KEH16365.1|	*-*-	mitovirus RNA-dependent RNA polymerase [Medicago truncatula]		
Niben101Scf10101g00005.1	sp|Q3SZZ5|TM208_BOVIN	*-*-	Transmembrane protein 208	IPR008506 (Protein of unknown function DUF788, TMEM208)	
Niben101Scf03128g08003.1	dbj|BAC23045.1|	--*-	monooxygenase [Solanum tuberosum]		
Niben101Scf07429g00006.1	sp|P49297|ACEA_SOLLC	****	Isocitrate lyase	IPR006254 (Isocitrate lyase)	GO:0003824 (catalytic activity), GO:0004451 (isocitrate lyase activity), GO:0008152 (metabolic process), GO:0019752 (carboxylic acid metabolic process)
Niben101Scf04664g01005.1	sp|Q93YQ7|GUN24_ARATH	***-	Endoglucanase 24	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04114g01056.1			Unknown protein		
Niben101Scf05705g02001.1	sp|Q8L4M1|THOC6_ARATH	--*-	THO complex subunit 6		
Niben101Scf02145g02001.1	sp|O65034|KNOSC_ORYSI	***-	Homeobox protein knotted-1-like 12	IPR005539 (ELK), IPR005540 (KNOX1), IPR005541 (KNOX2), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01445g00001.1	sp|Q3UDE2|TTL12_MOUSE	***-	Tubulin--tyrosine ligase-like protein 12	IPR004344 (Tubulin-tyrosine ligase/Tubulin polyglutamylase)	GO:0006464 (cellular protein modification process)
Niben101Scf01180g02004.1			Unknown protein		
Niben101Scf01991g05016.1			Unknown protein		
Niben101Scf23814g00034.1	sp|Q9XHM1|EIF3C_MEDTR	****	Eukaryotic translation initiation factor 3 subunit C	IPR000717 (Proteasome component (PCI) domain), IPR008905 (Eukaryotic translation initiation factor 3 subunit C, N-terminal domain), IPR027516 (Eukaryotic translation initiation factor 3 subunit C)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005852 (eukaryotic translation initiation factor 3 complex), GO:0006413 (translational initiation), GO:0031369 (translation initiation factor binding)
Niben101Scf06709g05001.1	sp|Q5M786|WDR5_XENTR	--*-	WD repeat-containing protein 5	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04732g01028.1	sp|Q9STF0|LRKS3_ARATH	****	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13402g00015.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf14458g00008.1	AT1G29200.2	***-	O-fucosyltransferase family protein LENGTH=611	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf07693g00007.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf14910g00003.1	sp|Q5HGZ1|ODPA_STAAC	***-	Pyruvate dehydrogenase E1 component subunit alpha	IPR001017 (Dehydrogenase, E1 component), IPR029061 (Thiamin diphosphate-binding fold)	GO:0008152 (metabolic process), GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor)
Niben101Scf00355g04003.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf10575g02003.1	sp|Q9M5X8|NLTP_PRUAV	-**-	Non-specific lipid-transfer protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02242g03013.1	sp|Q9FIB6|PS12A_ARATH	***-	26S proteasome non-ATPase regulatory subunit 12 homolog A	IPR000717 (Proteasome component (PCI) domain)	GO:0005515 (protein binding)
Niben101Scf02625g01004.1	sp|Q9H0Z9|RBM38_HUMAN	*-**	RNA-binding protein 38	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06683g05004.1	ref|XP_003636799.1|	****	2-aminoethanethiol dioxygenase [Medicago truncatula]	IPR012864 (Cysteamine dioxygenase), IPR014710 (RmlC-like jelly roll fold)	GO:0047800 (cysteamine dioxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf15678g00013.1	ref|XP_002531502.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF30889.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06347g04039.1	sp|O48781|SPX2_ARATH	***-	SPX domain-containing protein 2	IPR004331 (SPX, N-terminal)	
Niben101Scf05942g01013.1	tpg|DAA42479.1|	*-*-	TPA: hypothetical protein ZEAMMB73_628319 [Zea mays]	IPR019007 (WW domain binding protein 11)	GO:0006396 (RNA processing)
Niben101Scf08026g02005.1	gb|AES60043.2|	--*-	GRF zinc finger protein [Medicago truncatula]		
Niben101Scf04738g02001.1	sp|Q8LB81|GDL79_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01669g03006.1	sp|A0JN52|SF3B3_BOVIN	*-*-	Splicing factor 3B subunit 3	IPR004871 (Cleavage/polyadenylation specificity factor, A subunit, C-terminal)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Scf00428g00006.1	sp|P31044|PEBP1_RAT	*-*-	Phosphatidylethanolamine-binding protein 1	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf02057g01011.1			Unknown protein		
Niben101Scf05554g05006.1	AT1G77700.1	***-	Pathogenesis-related thaumatin superfamily protein LENGTH=356	IPR001938 (Thaumatin)	
Niben101Scf05188g00006.1	ref|NP_565917.2|	*-*-	ARM repeat superfamily protein [Arabidopsis thaliana] RecName: Full=Uncharacterized protein [Arabidopsis thaliana] gb|AEC09748.1| ARM repeat superfamily protein [Arabidopsis thaliana]		
Niben101Scf03867g02040.1	AT3G50440.1	***-	methyl esterase 10 LENGTH=288	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf14562g00007.1	sp|Q68FF9|S5A1_MOUSE	***-	3-oxo-5-alpha-steroid 4-dehydrogenase 1	IPR001104 (3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal)	GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
Niben101Scf05417g03024.1	sp|Q9T072|BH025_ARATH	*-*-	Transcription factor bHLH25	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03777g00014.1	sp|Q84UU9|TPS06_ARATH	*-**	Terpenoid synthase 6	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf10388g02018.1	sp|A7FDT6|AAEB_YERP3	--*-	p-hydroxybenzoic acid efflux pump subunit AaeB	IPR006726 (Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein)	GO:0005886 (plasma membrane), GO:0006810 (transport)
Niben101Scf19957g00001.1	gb|AGY62799.1|	*-*-	orf148 (mitochondrion) [Eruca vesicaria subsp. sativa] gb|AHY20342.1| hypothetical protein (mitochondrion) (mitochondrion) [Brassica juncea var. tumida] gb|AIC83308.1| orf148 (mitochondrion) [Brassica oleracea var. botrytis]		
Niben101Scf02210g09022.1	sp|O75165|DJC13_HUMAN	--*-	DnaJ homolog subfamily C member 13		
Niben101Scf01774g01001.1	sp|Q058P4|PUB30_ARATH	***-	U-box domain-containing protein 30	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf01582g03003.1	ref|NP_001049616.1|	*-*-	product [Oryza sativa Japonica Group]	IPR007656 (Zein-binding domain)	
Niben101Scf14688g02001.1	gb|AES91542.2|	*-*-	epidermal patterning factor-like protein [Medicago truncatula]		
Niben101Scf08876g00011.1	gb|AFU75202.1|	*-*-	nematode resistance-like protein, partial [Solanum tuberosum]	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf01484g00005.1	gb|ABW81176.1|	--*-	non-LTR reverse transcriptase [Arabidopsis cebennensis]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf03640g00002.1	emb|CDX74218.1|	*-*-	BnaA03g28290D [Brassica napus]	IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf05245g04010.1	sp|Q8W246|ZIP7_ARATH	*-**	Zinc transporter 7	IPR003689 (Zinc/iron permease)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02626g08014.1	ref|XP_002528053.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF34303.1| conserved hypothetical protein [Ricinus communis]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf06661g02005.1	gb|AAG37453.1|	--*-	seed maturation protein LEA 4 [Glycine tomentella]	IPR005513 (Late embryogenesis abundant protein, LEA-25/LEA-D113)	GO:0009790 (embryo development)
Niben101Scf00176g02015.1	AT3G22104.1	***-	Phototropic-responsive NPH3 family protein LENGTH=506	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	
Niben101Scf03482g02002.1	sp|P81392|MYB06_ANTMA	***-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02268g02003.1	AT1G06820.1	*-*-	carotenoid isomerase LENGTH=595		
Niben101Scf06621g02032.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03191g05004.1	AT1G03220.1	***-	Eukaryotic aspartyl protease family protein LENGTH=433	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04401g00001.1	sp|Q54ZG7|TM234_DICDI	-**-	Transmembrane protein 234 homolog	IPR018908 (Uncharacterised protein family UPF0546)	
Niben101Scf00149g02011.1			Unknown protein		
Niben101Scf11805g01002.1	emb|CDY70488.1|	*-*-	BnaUnng03880D, partial [Brassica napus]		
Niben101Scf01759g07006.1	sp|Q653H7|ARFR_ORYSJ	****	Auxin response factor 18	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf04894g00006.1	sp|Q14376|GALE_HUMAN	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005886 (UDP-glucose 4-epimerase GalE), IPR025308 (UDP-glucose 4-epimerase C-terminal domain)	GO:0003824 (catalytic activity), GO:0003978 (UDP-glucose 4-epimerase activity), GO:0006012 (galactose metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf11491g02021.1	AT1G48790.1	***-	associated molecule with the SH3 domain of STAM 1 LENGTH=507	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR015063 (USP8 dimerisation domain)	GO:0005515 (protein binding)
Niben101Scf09654g02006.1	sp|Q94C77|RPKL_ARATH	--*-	Receptor protein kinase-like protein		
Niben101Scf11105g01014.1	sp|P33159|EF2_DESMO	***-	Elongation factor 2	IPR000640 (Translation elongation factor EFG, V domain), IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR009022 (Elongation factor G, III-V domain), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf02227g04007.1	sp|Q9JJI6|PIGO_MOUSE	*-*-	GPI ethanolamine phosphate transferase 3		
Niben101Scf06087g04010.1	sp|Q32PE9|LSM3_BOVIN	***-	U6 snRNA-associated Sm-like protein LSm3	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf06462g00003.1	sp|Q9HGX4|H2A_AGABI	***-	Histone H2A	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf02074g04005.1			Unknown protein		
Niben101Scf00788g00009.1	ref|XP_007011616.1|	***-	Centromere-associated protein E, putative isoform 1 [Theobroma cacao] gb|EOY29235.1| Centromere-associated protein E, putative isoform 1 [Theobroma cacao]		
Niben101Scf00265g01009.1			Unknown protein		
Niben101Scf04529g00005.1	sp|Q8DLP3|ATPA_THEEB	****	ATP synthase subunit alpha	IPR005294 (ATPase, F1 complex, alpha subunit), IPR023366 (ATP synthase subunit alpha-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0015992 (proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046034 (ATP metabolic process), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf05824g12004.1	AT3G48240.1	*-*-	Octicosapeptide/Phox/Bem1p family protein LENGTH=180	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf02819g00001.1	AT4G27670.1	***-	heat shock protein 21 LENGTH=227	IPR008978 (HSP20-like chaperone)	
Niben101Scf10278g02002.1	sp|Q6ZSG1|RN165_HUMAN	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00051g03003.1	sp|Q9SSF8|CDPKU_ARATH	*-**	Calcium-dependent protein kinase 30	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03747g00005.1	gb|KEH31499.1|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf02755g06016.1	sp|P54652|HSP72_HUMAN	***-	Heat shock-related 70 kDa protein 2	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf16693g00003.1	sp|Q1ZXQ4|FCSB_DICDI	*-*-	Fatty acyl-CoA synthetase B	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04539g01016.1	AT4G32520.1	****	serine hydroxymethyltransferase 3 LENGTH=529	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf08157g00010.1	sp|A5IIS7|TRUB_THEP1	-**-	tRNA pseudouridine synthase B		
Niben101Scf21739g00002.1	AT3G22960.1	****	Pyruvate kinase family protein LENGTH=596	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf01899g07008.1	ref|XP_003628568.1|	*-*-	Replication factor A protein [Medicago truncatula]		
Niben101Scf12084g00003.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00745g03001.1	ref|XP_007018881.1|	--*-	F-box and Leucine Rich Repeat domains containing protein, putative isoform 3 [Theobroma cacao] gb|EOY16106.1| F-box and Leucine Rich Repeat domains containing protein, putative isoform 3 [Theobroma cacao]		
Niben101Scf01316g05002.1	sp|Q9LSL1|BH093_ARATH	*-*-	Transcription factor bHLH93	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00246g04008.1	sp|F6HQ26|RU1C_VITVI	*-*-	U1 small nuclear ribonucleoprotein C	IPR017340 (U1 small nuclear ribonucleoprotein C)	GO:0000387 (spliceosomal snRNP assembly), GO:0000398 (mRNA splicing, via spliceosome), GO:0005685 (U1 snRNP), GO:0008270 (zinc ion binding)
Niben101Scf02170g02014.1	AT1G11940.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=383	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf03830g00012.1	sp|P55956|ASP3_CAEEL	-***	Aspartic protease 3	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00879g02005.1			Unknown protein	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf03365g01007.1	sp|Q8GYA4|CRK10_ARATH	*-**	Cysteine-rich receptor-like protein kinase 10	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09387g04004.1	AT2G37180.1	*-*-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf10074g00009.1	ref|WP_031151667.1|	*-**	ATP-binding protein [Streptomyces erythrochromogenes]	IPR000157 (Toll/interleukin-1 receptor homology (TIR) domain), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0043531 (ADP binding)
Niben101Scf10528g02006.1	sp|P61998|TF2B_PYRFU	****	Transcription initiation factor IIB	IPR000812 (Transcription factor TFIIB)	GO:0000126 (transcription factor TFIIIB complex), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0006384 (transcription initiation from RNA polymerase III promoter), GO:0008270 (zinc ion binding), GO:0017025 (TBP-class protein binding)
Niben101Scf01506g02013.1	sp|O78502|PSAD_GUITH	****	Photosystem I reaction center subunit II	IPR003685 (Photosystem I PsaD)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf05395g03009.1	AT1G42960.1	***-	expressed protein localized to the inner membrane of the chloroplast. LENGTH=168		
Niben101Scf02494g12009.1	sp|O42993|FKBP_SCHPO	*-*-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type), IPR024057 (Nucleoplasmin core domain)	GO:0006457 (protein folding)
Niben101Scf01351g00004.1	gb|ABI34321.1|	--*-	RNase H family protein [Solanum demissum]		
Niben101Ctg12559g00003.1	AT1G74800.1	*-**	Galactosyltransferase family protein LENGTH=672	IPR002659 (Glycosyl transferase, family 31), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane), GO:0030246 (carbohydrate binding)
Niben101Scf02983g00001.1	AT5G54130.2	****	Calcium-binding endonuclease/exonuclease/phosphatase family LENGTH=436	IPR005135 (Endonuclease/exonuclease/phosphatase), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02216g01015.1	sp|F1R983|COM1_DANRE	*-*-	DNA endonuclease RBBP8	IPR013882 (DNA repair protein Sae2/CtIP)	
Niben101Scf01777g03032.1	AT5G57010.1	***-	calmodulin-binding family protein LENGTH=495		
Niben101Scf19534g00001.1	AT2G30170.1	***-	Protein phosphatase 2C family protein LENGTH=298	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf02639g01002.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf00551g02006.1			Unknown protein		
Niben101Scf01073g01005.1	sp|Q3MJK5|CDK12_RAT	*-**	Cyclin-dependent kinase 12	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03021g03008.1			Unknown protein		
Niben101Scf00270g16015.1	AT4G24450.1	*-*-	phosphoglucan, water dikinase LENGTH=1278	IPR002192 (Pyruvate phosphate dikinase, PEP/pyruvate-binding), IPR013783 (Immunoglobulin-like fold), IPR013784 (Carbohydrate-binding-like fold), IPR013816 (ATP-grasp fold, subdomain 2)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0016301 (kinase activity), GO:0016310 (phosphorylation), GO:0030246 (carbohydrate binding), GO:2001070 (starch binding)
Niben101Scf15187g02002.1			Unknown protein		
Niben101Scf00303g00001.1	sp|Q9H9S4|CB39L_HUMAN	****	Calcium-binding protein 39-like	IPR013878 (Mo25-like)	GO:0005488 (binding)
Niben101Scf04131g01028.1	sp|O80340|ERF78_ARATH	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg11557g00002.1	sp|Q09466|WHT3_CAEEL	*-**	ABC transporter ATP-binding protein/permease wht-3	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf03326g05005.1	sp|Q9ZJQ2|DNAJ_HELPJ	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf07405g04004.1	sp|P53498|ACT_CHLRE	***-	Actin	IPR004000 (Actin family)	
Niben101Scf01233g00008.1	sp|Q9SKK0|EBF1_ARATH	****	EIN3-binding F-box protein 1	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf01611g01003.1	sp|P69781|GAT12_ARATH	****	GATA transcription factor 12	IPR016679 (Transcription factor, GATA, plant)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding), GO:0045893 (positive regulation of transcription, DNA-templated)
Niben101Scf00090g13009.1	ref|XP_002535856.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06613g05022.1	sp|Q9AR19|GCN5_ARATH	****	Histone acetyltransferase GCN5	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf02358g03020.1	sp|Q9LZX8|BIG2_ARATH	*-*-	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02405g03003.1	sp|Q03199|IPIB_TOBAC	****	Proteinase inhibitor I-B	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding)
Niben101Scf05201g10001.1	emb|CDX70508.1|	***-	BnaC03g05920D [Brassica napus]		
Niben101Scf02217g00007.1	sp|Q03066|RPSC_NOSS1	*-**	RNA polymerase sigma-C factor	IPR014284 (RNA polymerase sigma-70 like domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Scf13572g00012.1	sp|O65874|MTF1_PEA	****	MADS-box transcription factor 1	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Ctg15389g00002.1	AT1G11400.1	***-	partner of Y14-MAGO LENGTH=204		
Niben101Scf05731g00021.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00155g01007.1	sp|Q18B61|NUSB_PEPD6	*-*-	N utilization substance protein B homolog	IPR011605 (NusB antitermination factor)	GO:0003723 (RNA binding), GO:0006353 (DNA-templated transcription, termination), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08304g06014.1	gb|KEH44548.1|	*-*-	pollen protein Ole E I-like protein [Medicago truncatula]	IPR006706 (Extensin domain)	GO:0005199 (structural constituent of cell wall), GO:0009664 (plant-type cell wall organization)
Niben101Scf02668g03003.1	sp|Q7ZZY3|TOB1B_XENLA	--*-	DNA topoisomerase 2-binding protein 1-B	IPR001357 (BRCT domain)	
Niben101Scf00878g02020.1	ref|NP_001053492.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf06661g00007.1	AT2G42130.4	***-	Plastid-lipid associated protein PAP / fibrillin family protein LENGTH=299	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf02456g00011.1	sp|Q9FLB5|LAC12_ARATH	***-	Laccase-12	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Ctg16424g00003.1	sp|Q9ZNV9|AHP1_ARATH	--*-	Histidine-containing phosphotransfer protein 1		
Niben101Scf05675g01015.1	ref|NP_001174997.1|	*-*-	OsI_24483 [Oryza sativa Indica Group] dbj|BAH93725.1| [Oryza sativa Japonica Group]		
Niben101Scf02887g00001.1	AT3G24040.1	*-*-	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=417		
Niben101Scf08321g01005.1	AT4G11070.1	*-**	WRKY family transcription factor LENGTH=313	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00757g04003.1	sp|Q9UN86|G3BP2_HUMAN	--*-	Ras GTPase-activating protein-binding protein 2	IPR002075 (Nuclear transport factor 2)	GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf02043g00019.1	sp|O82391|JOSL_ARATH	*-*-	Josephin-like protein	IPR006155 (Machado-Joseph disease protein MJD)	GO:0008242 (omega peptidase activity)
Niben101Scf00289g07002.1			Unknown protein	IPR026961 (PGG domain)	
Niben101Scf02694g00007.1	sp|G3CCC0|CLDS_TOBAC	*-*-	Copal-8-ol diphosphate hydratase, chloroplastic		
Niben101Scf02829g04008.1	sp|Q9SV13|SUT31_ARATH	****	Sulfate transporter 3.1	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0009507 (chloroplast), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf09595g03001.1	AT2G23610.1	***-	methyl esterase 3 LENGTH=263	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02048g00006.1	sp|Q57604|MJK1_METJA	--*-	Potassium channel protein 1	IPR011992 (EF-hand domain pair), IPR013099 (Two pore domain potassium channel domain)	
Niben101Scf01718g02001.1	sp|Q54CU7|TPC2L_DICDI	***-	Trafficking protein particle complex subunit 2-like protein	IPR006722 (Sedlin)	GO:0005622 (intracellular), GO:0006810 (transport), GO:0006888 (ER to Golgi vesicle-mediated transport)
Niben101Scf04761g00002.1	sp|C6DGH6|BIOH_PECCP	*-*-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf08954g02004.1			Unknown protein		
Niben101Scf05112g00010.1	sp|Q54P13|ABCC8_DICDI	*-*-	ABC transporter C family member 8	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf09153g05005.1	sp|Q5PP37|ATXR2_ARATH	***-	Histone-lysine N-methyltransferase ATXR2	IPR001214 (SET domain), IPR002893 (Zinc finger, MYND-type)	GO:0005515 (protein binding)
Niben101Scf06720g01022.1	AT1G10530.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=166	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf00761g05004.1	dbj|BAO50886.1|	*-*-	cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]		
Niben101Scf03446g02005.1			Unknown protein		
Niben101Scf03141g10007.1	sp|Q8VYI3|ECH2_ARATH	***-	Enoyl-CoA hydratase 2, peroxisomal	IPR029069 (HotDog domain)	
Niben101Scf08191g00001.1	ref|XP_007022139.1|	-**-	Heat stress transcription factor B-4b, putative [Theobroma cacao] gb|EOY13664.1| Heat stress transcription factor B-4b, putative [Theobroma cacao]		
Niben101Scf03267g00021.1	AT4G34860.1	*-*-	Plant neutral invertase family protein LENGTH=571	IPR024746 (Glycosyl hydrolase family 100)	GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf02407g05003.1	sp|Q9LD45|BI1_ARATH	***-	Bax inhibitor 1		
Niben101Scf01993g08012.1	sp|Q54UK0|PLDA_DICDI	*-**	Phospholipase D A	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0004630 (phospholipase D activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0046470 (phosphatidylcholine metabolic process)
Niben101Scf04953g06005.1	sp|Q9M8J3|FRS7_ARATH	***-	Protein FAR1-RELATED SEQUENCE 7	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type), IPR018289 (MULE transposase domain)	GO:0008270 (zinc ion binding)
Niben101Scf03179g00010.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf18348g01028.1	sp|B4STN3|SYH_STRM5	***-	Histidine--tRNA ligase	IPR001106 (Aromatic amino acid lyase), IPR004516 (Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit), IPR008948 (L-Aspartase-like)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf05797g00009.1			Unknown protein		
Niben101Scf14695g00001.1	gb|AGI48806.1|	****	transport membrane protein (mitochondrion) [Lolium perenne]	IPR002033 (Sec-independent periplasmic protein translocase TatC)	GO:0016021 (integral component of membrane)
Niben101Scf01739g04002.1	sp|O74933|UAP1_CANAX	***-	UDP-N-acetylglucosamine pyrophosphorylase	IPR002618 (UTP--glucose-1-phosphate uridylyltransferase family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0008152 (metabolic process), GO:0070569 (uridylyltransferase activity)
Niben101Scf10866g02020.1	AT3G29180.1	***-	Protein of unknown function (DUF1336) LENGTH=513	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf02418g00014.1	ref|NP_001049221.1|	*-*-	product [Oryza sativa Japonica Group]	IPR008545 (WEB family)	
Niben101Scf04703g01003.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf01513g01012.1	sp|Q9ZVE0|ORN_ARATH	***-	Oligoribonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf07868g01002.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf01376g03008.1	sp|Q9FQ08|KU70_ARATH	*-*-	ATP-dependent DNA helicase 2 subunit KU70	IPR002035 (von Willebrand factor, type A), IPR005161 (Ku70/Ku80, N-terminal alpha/beta)	
Niben101Scf03779g08012.1	AT5G05990.1	****	Mitochondrial glycoprotein family protein LENGTH=259	IPR003428 (Mitochondrial glycoprotein)	GO:0005759 (mitochondrial matrix)
Niben101Scf01655g01027.1	sp|Q8RX88|FACE1_ARATH	****	CAAX prenyl protease 1 homolog	IPR001915 (Peptidase M48)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0008233 (peptidase activity), GO:0016020 (membrane), GO:0071586 (CAAX-box protein processing)
Niben101Scf01060g01024.1	sp|Q9Y259|CHKB_HUMAN	****	Choline/ethanolamine kinase	IPR011009 (Protein kinase-like domain), IPR026712 (Choline/Ethanolamine kinase)	GO:0016301 (kinase activity), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0046474 (glycerophospholipid biosynthetic process)
Niben101Scf03576g01033.1	AT5G50740.3	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=290	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf02755g03004.1	AT5G58960.1	***-	Plant protein of unknown function (DUF641) LENGTH=559	IPR006943 (Domain of unknown function DUF641, plant)	
Niben101Scf08263g04004.1	sp|Q9SJ56|BLH1_ARATH	*-*-	BEL1-like homeodomain protein 1	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00100g00010.1	gb|AAV92887.1|	*-*-	Avr9/Cf-9 rapidly elicited protein 11, partial [Nicotiana tabacum]		
Niben101Scf06737g00036.1			Unknown protein		
Niben101Scf09628g00020.1	sp|P24521|ERG8_YEAST	***-	Phosphomevalonate kinase	IPR005916 (Phosphomevalonate kinase, eukaryotic)	GO:0005524 (ATP binding)
Niben101Scf04044g01026.1	AT2G38140.1	***-	plastid-specific ribosomal protein 4 LENGTH=118		
Niben101Scf03448g03001.1	gb|EGW12897.1|	--*-	Mucin-19 [Cricetulus griseus]		
Niben101Scf00986g01004.1			Unknown protein		
Niben101Scf05140g00001.1	sp|Q9LJK3|LAG12_ARATH	*-*-	LAG1 longevity assurance homolog 2		
Niben101Scf13828g01010.1			Unknown protein		
Niben101Scf01727g01001.1	sp|Q9FM19|HIR1_ARATH	***-	Hypersensitive-induced response protein 1	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf03284g02003.1			Unknown protein		
Niben101Scf21140g00009.1	sp|Q01593|ABI3_ARATH	***-	B3 domain-containing transcription factor ABI3	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Ctg13036g00003.1	gb|ABJ99598.1|	*-*-	NBS-LRR type resistance protein [Beta vulgaris]		
Niben101Scf01375g05011.1	sp|Q5NCF2|TPPC1_MOUSE	***-	Trafficking protein particle complex subunit 1	IPR007233 (Sybindin-like protein)	GO:0005801 (cis-Golgi network), GO:0006810 (transport), GO:0006888 (ER to Golgi vesicle-mediated transport)
Niben101Scf14329g00007.1	sp|P52409|E13B_WHEAT	*-*-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00635g01010.1	emb|CDY45164.1|	*-*-	BnaA06g33680D [Brassica napus]		
Niben101Scf06091g07003.1	sp|Q9LVZ7|PDCT1_ARATH	***-	Phosphatidylcholine:diacylglycerol cholinephosphotransferase 1		
Niben101Scf03000g01001.1	gb|ACQ59171.1|	***-	potyviral VPg interacting protein 2 [Phaseolus vulgaris]	IPR004082 (Protein OBERON)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04981g00023.1	ref|NP_198587.1|	***-	alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana] gb|AED94221.1| lipase class 3 family protein / putative calmodulin-binding heat-shock protein [Arabidopsis thaliana]	IPR005592 (Mono-/di-acylglycerol lipase, N-terminal), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0016042 (lipid catabolic process)
Niben101Scf01664g06008.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03414g00002.1	AT3G46980.3	***-	phosphate transporter 4;3 LENGTH=534	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00974g00003.1	AT1G43770.2	***-	RING/FYVE/PHD zinc finger superfamily protein LENGTH=431		
Niben101Scf00568g04011.1	sp|B2LMI9|PSBC_GUIAB	****	Photosystem II CP43 reaction center protein	IPR000484 (Photosynthetic reaction centre, L/M), IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009523 (photosystem II), GO:0009767 (photosynthetic electron transport chain), GO:0009772 (photosynthetic electron transport in photosystem II), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction), GO:0030076 (light-harvesting complex), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf10342g01028.1	sp|Q0VFE3|PGAP3_XENTR	***-	Post-GPI attachment to proteins factor 3	IPR007217 (Per1-like)	
Niben101Scf03804g00004.1	sp|O65351|SUBL_ARATH	--*-	Subtilisin-like protease	IPR009020 (Proteinase inhibitor, propeptide), IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf00621g02001.1	ref|XP_002531844.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF30542.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04292g10002.1	emb|CDY56020.1|	***-	BnaA08g29280D [Brassica napus]		
Niben101Scf10902g00010.1	AT2G41190.1	***-	Transmembrane amino acid transporter family protein LENGTH=536	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf01739g04001.1	AT1G31040.1	***-	PLATZ transcription factor family protein LENGTH=243	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf00906g00001.1	sp|Q9ZW88|FBL34_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf07451g00016.1	sp|Q9ZVX5|PP156_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03274g01007.1	gb|ABN09101.1|	*-**	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf05142g00024.1			Unknown protein		
Niben101Scf09719g00002.1	AT4G03000.1	***-	RING/U-box superfamily protein LENGTH=814	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01683g05010.1			Unknown protein		
Niben101Scf00229g06005.1	sp|O80932|EXPA3_ARATH	***-	Expansin-A3	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf00892g00006.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04779g01001.1	AT3G60690.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=170	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02407g05002.1			Unknown protein		
Niben101Scf07444g03006.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg10402g00001.1	sp|A6QRA1|NRPE7_ARATH	***-	DNA-directed RNA polymerase V subunit 7	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf01817g02002.1	sp|C6E2Q0|IF2_GEOSM	****	Translation initiation factor IF-2	IPR000178 (Translation initiation factor aIF-2, bacterial-like), IPR005225 (Small GTP-binding protein domain), IPR009000 (Translation protein, beta-barrel domain), IPR023115 (Translation initiation factor IF- 2, domain 3), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003743 (translation initiation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006413 (translational initiation)
Niben101Scf06954g01005.1	AT4G04020.1	***-	fibrillin LENGTH=318	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf05827g04015.1	sp|Q8SRH0|PRS4_ENCCU	***-	26S protease regulatory subunit 4 homolog	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf03080g03015.1	sp|Q9NGQ2|KIF1_DICDI	*-**	Kinesin-related protein 1	IPR001752 (Kinesin motor domain), IPR024658 (Kinesin-like, KLP2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf05822g06004.1	sp|P55853|SUMO_CAEEL	*-*-	Small ubiquitin-related modifier	IPR029071 (Ubiquitin-related domain)	
Niben101Scf05238g00006.1	AT5G12460.1	***-	Protein of unknown function (DUF604) LENGTH=441	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf05902g01002.1	emb|CDY31690.1|	*-*-	BnaA05g08570D [Brassica napus]		
Niben101Scf16532g00003.1	AT5G01550.1	*-**	lectin receptor kinase a4.1 LENGTH=688	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf11978g04002.1	sp|B2JD61|ACSA_BURP8	***-	Acetyl-coenzyme A synthetase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04628g00015.1	sp|Q8VYG9|PIRL9_ARATH	***-	Plant intracellular Ras-group-related LRR protein 9		
Niben101Scf07690g00015.1	AT5G42130.1	***-	Mitochondrial substrate carrier family protein LENGTH=412	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf03734g04003.1	sp|Q9LEX0|P2A13_ARATH	***-	F-box protein PP2-A13	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf07991g00003.1			Unknown protein		
Niben101Scf05374g04012.1			Unknown protein		
Niben101Scf03951g02012.1	sp|O81322|LBD31_ARATH	*-*-	LOB domain-containing protein 31	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf04973g00010.1			Unknown protein		
Niben101Scf04410g09002.1	sp|E7F8F4|ASCC3_DANRE	*-*-	Activating signal cointegrator 1 complex subunit 3	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01192g04005.1	emb|CDY26040.1|	***-	BnaC06g05840D [Brassica napus]		
Niben101Scf03694g02003.1	dbj|BAA21495.1|	***-	metallocarboxypeptidase inhibitor [Solanum tuberosum]	IPR004231 (Carboxypeptidase A inhibitor-like)	
Niben101Scf01852g01021.1	sp|P45434|SSRA_ARATH	***-	Translocon-associated protein subunit alpha	IPR005595 (Translocon-associated protein (TRAP), alpha subunit)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf03735g05004.1	sp|Q6C908|PAN1_YARLI	--*-	Actin cytoskeleton-regulatory complex protein PAN1		
Niben101Scf03349g00008.1	sp|Q6G1F8|DNAJ_BARQU	***-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf00090g07002.1	sp|P97852|DHB4_RAT	*-*-	Peroxisomal multifunctional enzyme type 2	IPR003033 (SCP2 sterol-binding domain)	
Niben101Scf10579g01024.1	sp|Q2H080|RM04_CHAGB	*-**	54S ribosomal protein L4, mitochondrial	IPR001854 (Ribosomal protein L29), IPR010729 (Ribosomal protein L47, mitochondrial)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005761 (mitochondrial ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03497g04009.1	AT4G29920.1	***-	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein LENGTH=1017	IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02891g04012.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00752g03006.1	sp|Q7ZUC7|PGES2_DANRE	***-	Prostaglandin E synthase 2	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding), GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf07744g00016.1	sp|P57758|CTNS_ARATH	***-	Cystinosin homolog	IPR005282 (Lysosomal cystine transporter)	
Niben101Scf03284g00007.1			Unknown protein		
Niben101Scf10524g01008.1	sp|P59110|SENP1_MOUSE	*-*-	Sentrin-specific protease 1	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00342g00004.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf05323g02008.1	sp|Q9LIH5|C3H38_ARATH	*-*-	Zinc finger CCCH domain-containing protein 38	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf05855g04019.1	sp|A0LCH8|ZNUC_MAGSM	--**	Zinc import ATP-binding protein ZnuC	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf08275g01002.1	sp|A7MFC3|MDTK_CROS8	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein), IPR029303 (Polysaccharide biosynthesis protein, C-terminal domain)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03453g02001.1	sp|P0DH90|FRIGI_ARATH	*-*-	Protein FRIGIDA	IPR012474 (Frigida-like)	
Niben101Scf15364g00001.1	sp|Q17TI5|BRX_ARATH	***-	Protein BREVIS RADIX	IPR013591 (Brevis radix (BRX) domain), IPR027988 (Transcription factor  BREVIS RADIX, N-terminal domain)	
Niben101Scf00090g13008.1	sp|O15488|GLYG2_HUMAN	*-*-	Glycogenin-2	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf01184g14004.1	sp|P30285|CDK4_MOUSE	--**	Cyclin-dependent kinase 4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01402g01009.1	sp|Q9LFQ3|SNL2_ARATH	***-	Paired amphipathic helix protein Sin3-like 2	IPR003822 (Paired amphipathic helix), IPR013194 (Histone deacetylase interacting)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06806g02004.1	sp|Q9SKB3|PARG1_ARATH	*-**	Poly(ADP-ribose) glycohydrolase 1	IPR007724 (Poly(ADP-ribose) glycohydrolase)	GO:0004649 (poly(ADP-ribose) glycohydrolase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00244g03004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01529g00020.1	sp|Q59XQ1|HAL22_CANAL	*-*-	3'(2'),5'-bisphosphate nucleotidase 2	IPR000760 (Inositol monophosphatase)	GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf03410g04003.1	sp|Q9Y2K6|UBP20_HUMAN	*-**	Ubiquitin carboxyl-terminal hydrolase 20	IPR006615 (Peptidase C19, ubiquitin-specific peptidase, DUSP domain), IPR028889 (Ubiquitin specific protease domain), IPR029071 (Ubiquitin-related domain)	GO:0004843 (ubiquitin-specific protease activity), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf05109g04005.1	sp|Q94AN4|AP2L1_ARATH	****	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03004g02015.1	sp|Q8GX93|CLCE_ARATH	*-*-	Chloride channel protein CLC-e	IPR000644 (CBS domain)	
Niben101Scf03714g03003.1	sp|B9DPA1|MIAA_STACT	*-**	tRNA dimethylallyltransferase	IPR002627 (tRNA isopentenyltransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf02929g05048.1	sp|Q9CYL5|GAPR1_MOUSE	--*-	Golgi-associated plant pathogenesis-related protein 1		
Niben101Scf02408g03025.1	sp|C9S8J9|RRP36_VERA1	***-	rRNA biogenesis protein RRP36	IPR009292 (Protein of unknown function DUF947)	
Niben101Scf09819g04003.1	gb|AES96471.2|	--*-	DUF4283 domain protein [Medicago truncatula]		
Niben101Scf01018g08011.1	sp|Q6IV56|RN141_DANRE	--*-	RING finger protein 141	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02298g01015.1	AT5G35390.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=662	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf13185g02001.1	sp|Q9SFC6|GDIR_ARATH	****	Rho GDP-dissociation inhibitor 1	IPR000406 (RHO protein GDP dissociation inhibitor), IPR014756 (Immunoglobulin E-set)	GO:0005094 (Rho GDP-dissociation inhibitor activity), GO:0005737 (cytoplasm)
Niben101Scf18985g00001.1	sp|C1BXU5|UBL4A_ESOLU	--*-	Ubiquitin-like protein 4A	IPR003103 (BAG domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf13540g02007.1	sp|D1BD84|MSHA_SANKS	***-	D-inositol 3-phosphate glycosyltransferase	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf02210g11009.1	sp|Q9LSL9|PP445_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01983g07003.1	gb|AGY62799.1|	*-*-	orf148 (mitochondrion) [Eruca vesicaria subsp. sativa] gb|AHY20342.1| hypothetical protein (mitochondrion) (mitochondrion) [Brassica juncea var. tumida] gb|AIC83308.1| orf148 (mitochondrion) [Brassica oleracea var. botrytis]		
Niben101Scf02606g05030.1	sp|Q69TG5|MAD55_ORYSJ	*-*-	MADS-box transcription factor 55	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03365g01006.1	ref|WP_026032496.1|	*-*-	TenA family transcriptional regulator [Prochlorococcus sp. W7]	IPR016084 (Haem oxygenase-like, multi-helical), IPR023214 (HAD-like domain)	
Niben101Scf07980g02001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01202g00001.1	gb|KEH20261.1|	****	bZIP transcription factor family protein [Medicago truncatula]	IPR004827 (Basic-leucine zipper domain), IPR012900 (G-box binding, MFMR)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07638g04010.1	sp|Q9FMA1|PP433_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05628g01007.1	sp|Q9JLK3|CABP5_MOUSE	--**	Calcium-binding protein 5	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf04539g01015.1	sp|Q5XIJ6|BABA1_RAT	-***	BRISC and BRCA1-A complex member 1	IPR026126 (BRISC and BRCA1-A complex member 1)	GO:0045739 (positive regulation of DNA repair), GO:0070531 (BRCA1-A complex), GO:0070552 (BRISC complex)
Niben101Scf03894g04015.1	AT1G33170.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=639	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf09068g01003.1	AT4G35160.1	****	O-methyltransferase family protein LENGTH=382	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf01784g08011.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf02797g00004.1	gb|ABY59208.1|	*-*-	[Arabidopsis thaliana]		
Niben101Scf04276g01009.1	ref|XP_002515317.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF47301.1| conserved hypothetical protein [Ricinus communis]	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf00646g07008.1	sp|O17320|ACT_CRAGI	***-	Actin	IPR004000 (Actin family), IPR017877 (Myb-like domain)	
Niben101Scf02755g06017.1	emb|CDX86842.1|	***-	BnaA09g22320D [Brassica napus]		
Niben101Scf02245g00001.1	AT1G66360.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=174	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf02842g01008.1	AT1G04140.2	*-*-	Transducin family protein / WD-40 repeat family protein LENGTH=793	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01106g01008.1	tpg|DAA48985.1|	*-**	TPA: putative MYB DNA-binding domain superfamily protein [Zea mays]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Ctg12895g00001.1	AT5G64950.1	*-**	Mitochondrial transcription termination factor family protein LENGTH=391	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04537g01014.1			Unknown protein		
Niben101Scf01890g03016.1	sp|Q50940|CAH_NEIGO	***-	Carbonic anhydrase	IPR001148 (Alpha carbonic anhydrase), IPR023561 (Carbonic anhydrase, alpha-class)	GO:0004089 (carbonate dehydratase activity), GO:0006730 (one-carbon metabolic process), GO:0008270 (zinc ion binding)
Niben101Scf02246g01006.1	sp|Q8VH51|RBM39_MOUSE	--**	RNA-binding protein 39	IPR001878 (Zinc finger, CCHC-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Ctg15774g00002.1	sp|Q8R314|S35F5_MOUSE	***-	Solute carrier family 35 member F5	IPR009262 (Solute carrier family 35 member SLC35F1/F2/F6)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf02513g11004.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf31822g00001.1	gb|ABA94451.1|	***-	expressed protein [Oryza sativa Japonica Group] gb|EAZ18864.1| hypothetical protein OsJ_34403 [Oryza sativa Japonica Group]		
Niben101Scf02531g02017.1	sp|Q32KQ2|WDR53_BOVIN	***-	WD repeat-containing protein 53	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04562g03001.1	sp|P21616|AVP_VIGRR	****	Pyrophosphate-energized vacuolar membrane proton pump	IPR004131 (Pyrophosphate-energised proton pump)	GO:0004427 (inorganic diphosphatase activity), GO:0009678 (hydrogen-translocating pyrophosphatase activity), GO:0015992 (proton transport), GO:0016020 (membrane)
Niben101Scf04114g00048.1	gb|AGY62804.1|	*-*-	orf121a (mitochondrion) [Eruca vesicaria subsp. sativa]		
Niben101Scf00176g07004.1	sp|Q9M0X5|CRK25_ARATH	****	Cysteine-rich receptor-like protein kinase 25	IPR002902 (Gnk2-homologous domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00176g02014.1			Unknown protein		
Niben101Scf09840g00007.1	ref|XP_007038839.1|	***-	Pentatricopeptide repeat superfamily protein, putative isoform 1 [Theobroma cacao] gb|EOY23340.1| Pentatricopeptide repeat superfamily protein, putative isoform 1 [Theobroma cacao]	IPR012349 (FMN-binding split barrel)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02363g00025.1	sp|Q9LIC2|TMN7_ARATH	***-	Transmembrane 9 superfamily member 7	IPR004240 (Nonaspanin (TM9SF)), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane)
Niben101Scf01388g00001.1			Unknown protein		
Niben101Scf05500g00007.1	sp|Q566M8|RN150_DANRE	*-*-	RING finger protein 150	IPR007248 (Mpv17/PMP22), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016021 (integral component of membrane)
Niben101Scf03738g00014.1	emb|CDY64935.1|	*-*-	BnaCnng45570D [Brassica napus]	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Scf23958g00001.1			Unknown protein		
Niben101Scf01228g02009.1	gb|AAP53948.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR018289 (MULE transposase domain)	
Niben101Scf01852g04018.1	sp|P41390|PUR1_SCHPO	****	Amidophosphoribosyltransferase	IPR005854 (Amidophosphoribosyl transferase), IPR029055 (Nucleophile aminohydrolases, N-terminal), IPR029057 (Phosphoribosyltransferase-like)	GO:0004044 (amidophosphoribosyltransferase activity), GO:0008152 (metabolic process), GO:0009113 (purine nucleobase biosynthetic process), GO:0009116 (nucleoside metabolic process)
Niben101Scf04899g02003.1	sp|Q11SV1|GPMA_CYTH3	***-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf04760g02003.1			Unknown protein		
Niben101Scf03150g05001.1	sp|Q96MR9|ZN560_HUMAN	--*-	Zinc finger protein 560	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR029789 (Protein TRANSPARENT TESTA 1 like)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf04331g00003.1	gb|KEH43026.1|	***-	MtN26 [Medicago truncatula]		
Niben101Scf00394g03001.1	sp|Q5F9Q7|PNP_NEIG1	--*-	Polyribonucleotide nucleotidyltransferase	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf00288g04002.1	sp|B9DFS6|SNX2B_ARATH	***-	Sorting nexin 2B	IPR001683 (Phox homologous domain), IPR015404 (Vps5 C-terminal)	GO:0035091 (phosphatidylinositol binding)
Niben101Ctg03383g00002.1	gb|KEH39347.1|	--*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf06618g00011.1	emb|CDY24827.1|	--*-	BnaA08g14830D [Brassica napus]		
Niben101Scf03789g02005.1	ref|XP_003617985.1|	--*-	F-box/kelch-repeat protein [Medicago truncatula] gb|AET00944.1| F-box protein interaction domain protein [Medicago truncatula]	IPR013187 (F-box associated domain, type 3)	
Niben101Scf01371g06006.1	sp|Q8L5U0|CSN4_ARATH	***-	COP9 signalosome complex subunit 4	IPR000717 (Proteasome component (PCI) domain)	GO:0005515 (protein binding)
Niben101Scf05306g04011.1	emb|CDX91353.1|	*-*-	BnaC04g07970D [Brassica napus]		
Niben101Scf09560g00003.1	sp|Q9SA16|P2A09_ARATH	***-	Protein PHLOEM PROTEIN 2-LIKE A9	IPR025886 (Phloem protein 2-like)	
Niben101Scf11767g02003.1	sp|Q9FRI5|PPR57_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07728g00014.1	ref|NP_171948.1|	--**	calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] gb|AEE27711.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana]	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00058g03014.1	sp|Q05A36|MEX3C_MOUSE	--**	RNA-binding E3 ubiquitin-protein ligase MEX3C	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf12039g00001.1			Unknown protein		
Niben101Scf01202g01009.1	sp|Q9FJY7|PP449_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02639g04004.1	sp|Q6C9G2|BFR2_YARLI	*-*-	Protein BFR2	IPR012617 (Apoptosis-antagonizing transcription factor, C-terminal), IPR025160 (AATF leucine zipper-containing domain)	GO:0005634 (nucleus)
Niben101Scf03273g03022.1	sp|Q9SF78|GDL29_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf05304g01012.1	AT1G21740.1	*-*-	Protein of unknown function (DUF630 and DUF632) LENGTH=953	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf08355g03012.1			Unknown protein		
Niben101Scf07590g01015.1	sp|Q9LPI5|CID11_ARATH	****	Polyadenylate-binding protein-interacting protein 11	IPR009818 (Ataxin-2, C-terminal), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04123g01025.1	ref|XP_002531819.1|	****	calcium binding protein/cast, putative [Ricinus communis] gb|EEF30576.1| calcium binding protein/cast, putative [Ricinus communis]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf07503g00008.1	sp|Q5W7F2|AGD3_ARATH	*-*-	ADP-ribosylation factor GTPase-activating protein AGD3	IPR027267 (Arfaptin homology (AH) domain/BAR domain)	
Niben101Scf01427g01001.1	sp|Q28IT1|ERLEC_XENTR	*-*-	Endoplasmic reticulum lectin 1	IPR009011 (Mannose-6-phosphate receptor binding domain)	
Niben101Scf03634g10013.1	AT2G35880.1	*-*-	TPX2 (targeting protein for Xklp2) protein family LENGTH=432		
Niben101Scf08929g00003.1	ref|NP_001274932.1|	*-*-	zinc finger protein NUTCRACKER-like [Solanum tuber [Solanum tuberosum]		
Niben101Scf29981g00010.1	ref|XP_007035684.1|	*-*-	Transducin family protein / WD-40 repeat family protein, putative isoform 5 [Theobroma cacao] gb|EOY06610.1| Transducin family protein / WD-40 repeat family protein, putative isoform 5 [Theobroma cacao]	IPR007148 (Small-subunit processome, Utp12)	
Niben101Scf07635g00009.1	sp|P46300|RS4_SOLTU	***-	40S ribosomal protein S4	IPR000876 (Ribosomal protein S4e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04719g00005.1	sp|Q67ZB3|FRL3_ARATH	***-	FRIGIDA-like protein 3	IPR012474 (Frigida-like)	
Niben101Scf02069g00022.1	ref|WP_025532882.1|	***-	alpha/beta hydrolase [Vibrio parahaemolyticus]	IPR026555 (KAT8 regulatory NSL complex subunit 3/Testis-expressed sequence 30 protein), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01942g05029.1	sp|O33799|HPRT_SALTY	***-	Hypoxanthine phosphoribosyltransferase	IPR029057 (Phosphoribosyltransferase-like)	
Niben101Scf07320g00007.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf35593g00002.1	sp|A5UZK7|MUTS_ROSS1	*-**	DNA mismatch repair protein MutS	IPR000432 (DNA mismatch repair protein MutS, C-terminal), IPR007695 (DNA mismatch repair protein MutS-like, N-terminal), IPR007696 (DNA mismatch repair protein MutS, core), IPR007860 (DNA mismatch repair protein MutS, connector domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf08576g00012.1	sp|Q8HQQ3|MATK_PINPI	*-*-	Maturase K	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf10767g03010.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR015300 (DNA-binding pseudobarrel domain), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02081g03007.1	sp|Q9SX24|PCR11_ARATH	*-*-	Protein PLANT CADMIUM RESISTANCE 11	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf00788g02014.1	AT2G43840.2	***-	UDP-glycosyltransferase 74 F1 LENGTH=449	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05836g06001.1	AT5G05830.1	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=204	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf18637g02020.1	AT5G64420.1	****	DNA polymerase V family LENGTH=1306	IPR007015 (DNA polymerase V), IPR016024 (Armadillo-type fold)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0005488 (binding), GO:0006351 (transcription, DNA-templated)
Niben101Scf04674g00010.1	sp|P16924|P4HA1_CHICK	*-*-	Prolyl 4-hydroxylase subunit alpha-1	IPR003582 (ShKT domain), IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04568g02007.1	sp|Q54YL3|INT11_DICDI	*-*-	Integrator complex subunit 11 homolog	IPR001279 (Beta-lactamase-like)	
Niben101Scf04118g01004.1	sp|O07333|CRTY_ARTPT	***-	Phytoene synthase	IPR002060 (Squalene/phytoene synthase)	GO:0009058 (biosynthetic process), GO:0016740 (transferase activity), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf00813g01004.1	AT5G13490.1	***-	ADP/ATP carrier 2 LENGTH=385	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf03894g00010.1	AT4G24090.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 144 Blast hits to 142 proteins in 73 species: Archae - 3; Bacteria - 62; Metazoa - 7; Fungi - 13; Plants - 44; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). LENGTH=308		
Niben101Scf16337g00002.1	ref|YP_005090391.1|	***-	orf100 (mitochondrion) [Phoenix dactylifera] gb|AEM43931.1| orf100 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf11078g00008.1	sp|Q8RQD1|GLND_AZOBR	--*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf07231g02017.1	sp|A2Y9P0|MADS5_ORYSI	****	MADS-box transcription factor 5	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf00288g17006.1	sp|Q15042|RB3GP_HUMAN	*-**	Rab3 GTPase-activating protein catalytic subunit	IPR026147 (Rab3 GTPase-activating protein catalytic subunit)	GO:0005097 (Rab GTPase activator activity)
Niben101Scf00698g02015.1	ref|XP_002516666.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF45685.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02148g00017.1	sp|Q4R537|NOB1_MACFA	*-*-	RNA-binding protein NOB1	IPR017117 (D-site 20S pre-rRNA nuclease)	
Niben101Scf02621g04022.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05557g00002.1	sp|Q43358|VCL_THECC	***-	Vicilin	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf01426g03001.1	sp|Q9ZWA1|C3H2_ARATH	*-*-	Zinc finger CCCH domain-containing protein 2	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf11724g05008.1	AT5G54800.1	***-	glucose 6-phosphate/phosphate translocator 1 LENGTH=388	IPR004696 (Triose phosphate/phosphoenolpyruvate translocator), IPR004853 (Triose-phosphate transporter domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf01841g01018.1	sp|Q40554|EIF3A_TOBAC	****	Eukaryotic translation initiation factor 3 subunit A	IPR000717 (Proteasome component (PCI) domain), IPR027512 (Eukaryotic translation initiation factor 3 subunit A)	GO:0005515 (protein binding), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf03565g02020.1	sp|Q9Y6E0|STK24_HUMAN	*-**	Serine/threonine-protein kinase 24	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01512g00007.1	ref|NP_173819.2|	--*-	RNase H domain-containing protein [Arabidopsis thaliana] gb|AEE30476.1| RNase H domain-containing protein [Arabidopsis thaliana]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf03398g01005.1	sp|Q7Z9L3|EXGA_ASPOR	*-*-	Glucan 1,3-beta-glucosidase A	IPR008999 (Actin cross-linking), IPR010431 (Fascin), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0007015 (actin filament organization), GO:0051015 (actin filament binding)
Niben101Scf02074g07072.1	gb|AEG80477.1|	***-	maturase, partial (mitochondrion) [Montinia caryophyllacea]	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf03421g04004.1	ref|XP_006382251.1|	*-*-	myb family transcription factor family protein [Populus trichocarpa] gb|ERP60048.1| myb family transcription factor family protein [Populus trichocarpa]		
Niben101Scf01849g05009.1	sp|Q6FLQ5|AIM32_CANGA	*-*-	Altered inheritance of mitochondria protein 32	IPR009737 (Sucraseferredoxin-like)	
Niben101Scf01253g00004.1	sp|P53800|FDFT_NICBE	***-	Squalene synthase	IPR002060 (Squalene/phytoene synthase)	GO:0009058 (biosynthetic process), GO:0016740 (transferase activity)
Niben101Scf00337g03005.1	sp|Q84WM9|EF1B1_ARATH	****	Elongation factor 1-beta 1	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR014717 (Translation elongation factor EF1B/ribosomal protein S6)	GO:0003746 (translation elongation factor activity), GO:0005853 (eukaryotic translation elongation factor 1 complex), GO:0006414 (translational elongation)
Niben101Scf02025g04001.1	AT2G16770.1	****	Basic-leucine zipper (bZIP) transcription factor family protein LENGTH=249	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf11264g01029.1	AT2G18910.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=131		
Niben101Scf00109g08006.1	sp|C0QTB8|RS21_PERMH	--*-	30S ribosomal protein S21	IPR001911 (Ribosomal protein S21)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00415g01006.1	sp|P10967|ACCH3_SOLLC	***-	1-aminocyclopropane-1-carboxylate oxidase homolog	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf12737g00006.1	sp|Q9SJT9|COPA2_ARATH	*-*-	Coatomer subunit alpha-2	IPR006692 (Coatomer, WD associated region), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005198 (structural molecule activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf00920g00015.1	sp|A4XYC5|PANC_PSEMY	****	Pantothenate synthetase	IPR003721 (Pantoate-beta-alanine ligase)	GO:0003824 (catalytic activity), GO:0004592 (pantoate-beta-alanine ligase activity), GO:0009058 (biosynthetic process), GO:0015940 (pantothenate biosynthetic process)
Niben101Scf05439g02025.1			Unknown protein		
Niben101Scf01721g08008.1	sp|Q9SIT7|PP151_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06394g08020.1	AT5G38210.1	*-*-	Protein kinase family protein LENGTH=686	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf10873g00002.1	sp|Q9SJ45|OPF15_ARATH	*-*-	Transcription repressor OFP15	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf05087g04002.1	gb|KEH43874.1|	*-*-	cytochrome P450 family protein [Medicago truncatula]	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02408g00017.1	AT2G15680.1	****	Calcium-binding EF-hand family protein LENGTH=187	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf06936g02008.1	emb|CDY38444.1|	***-	BnaA10g17140D [Brassica napus]		
Niben101Scf08527g01006.1	sp|Q6ZKC0|14333_ORYSJ	***-	14-3-3-like protein GF14-C	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf13179g00003.1	sp|Q9LZJ3|XXT1_ARATH	***-	Xyloglucan 6-xylosyltransferase 1	IPR008630 (Galactosyl transferase)	GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf11361g00012.1	sp|Q5EAR5|TRPT1_DANRE	****	tRNA 2'-phosphotransferase 1	IPR002745 (Phosphotransferase KptA/Tpt1)	GO:0006388 (tRNA splicing, via endonucleolytic cleavage and ligation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01065g06001.1	sp|Q5SRH9|TT39A_HUMAN	--*-	Tetratricopeptide repeat protein 39A		
Niben101Scf02721g04003.1	sp|Q48F72|LPXB_PSE14	*-**	Lipid-A-disaccharide synthase	IPR003835 (Glycosyl transferase, family 19)	GO:0008915 (lipid-A-disaccharide synthase activity), GO:0009245 (lipid A biosynthetic process)
Niben101Scf05043g00002.1	ref|WP_024344624.1|	--*-	N-acetylglucosamine-6-phosphate deacetylase [Streptococcus equinus]		
Niben101Scf00528g00011.1	sp|F4J5S1|CLU_ARATH	***-	Clustered mitochondria protein	IPR011990 (Tetratricopeptide-like helical domain), IPR025697 (CLU domain), IPR028275 (Clustered mitochondria protein, N-terminal)	GO:0005515 (protein binding)
Niben101Scf00063g06009.1	AT4G31920.1	*-*-	response regulator 10 LENGTH=552	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Ctg13000g00001.1	sp|Q9LNC4|GTE4_ARATH	*-*-	Transcription factor GTE4		
Niben101Scf01190g03020.1	AT2G21340.1	*-*-	MATE efflux family protein LENGTH=559		
Niben101Scf00386g00002.1	sp|Q55BV5|PRS4_DICDI	*-*-	26S protease regulatory subunit 4 homolog	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02249g01023.1	sp|Q9LJX0|AB19B_ARATH	*-*-	ABC transporter B family member 19	IPR011527 (ABC transporter type 1, transmembrane domain)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf05977g00001.1			Unknown protein		
Niben101Scf01065g00002.1	sp|O00410|IPO5_HUMAN	*-*-	Importin-5	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Ctg13650g00001.1	AT5G10250.1	***-	Phototropic-responsive NPH3 family protein LENGTH=607	IPR027356 (NPH3 domain), IPR029959 (Root phototropism protein 3-like)	GO:0016567 (protein ubiquitination)
Niben101Scf06999g00012.1	AT2G39210.1	***-	Major facilitator superfamily protein LENGTH=601	IPR010658 (Nodulin-like), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf14877g01011.1	sp|Q9FJD5|LAC17_ARATH	***-	Laccase-17	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08706g02018.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08097g02002.1	AT4G21940.2	*-**	calcium-dependent protein kinase 15 LENGTH=561	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01953g00004.1			Unknown protein		
Niben101Scf02181g00003.1			Unknown protein		
Niben101Scf08304g06015.1	gb|KEH40671.1|	*-*-	pollen Ole e I family allergen [Medicago truncatula]	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf04732g01027.1	AT5G59010.1	*-*-	Protein kinase protein with tetratricopeptide repeat domain LENGTH=489	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06101g00013.1	sp|P42695|CNDD3_HUMAN	--*-	Condensin-2 complex subunit D3	IPR026971 (Condensin subunit 1/Condensin-2 complex subunit D3)	GO:0007076 (mitotic chromosome condensation)
Niben101Ctg13948g00003.1			Unknown protein		
Niben101Scf02461g06019.1	gb|ADQ28399.1|	*-*-	transport membrane protein, partial (mitochondrion) [Butomus umbellatus]		
Niben101Scf01781g00009.1	sp|Q8FV29|YIDC_BRUSU	*-**	Membrane protein insertase YidC	IPR001708 (Membrane insertase OXA1/ALB3/YidC), IPR028055 (Membrane insertase YidC/Oxa1, C-terminal)	GO:0016021 (integral component of membrane), GO:0051205 (protein insertion into membrane)
Niben101Scf04392g00001.1	AT3G43120.1	***-	SAUR-like auxin-responsive protein family LENGTH=160	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01072g03010.1	sp|Q94JW0|DOHH_ARATH	****	Deoxyhypusine hydroxylase	IPR016024 (Armadillo-type fold), IPR027517 (Deoxyhypusine hydroxylase)	GO:0005488 (binding), GO:0008612 (peptidyl-lysine modification to peptidyl-hypusine), GO:0019135 (deoxyhypusine monooxygenase activity)
Niben101Scf01033g02014.1	sp|Q93YP0|UEV1A_ARATH	***-	Ubiquitin-conjugating enzyme E2 variant 1A	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf02621g04023.1	sp|Q0V7S0|FB39_ARATH	--*-	F-box protein	IPR017451 (F-box associated interaction domain)	
Niben101Scf05811g01004.1	gb|KEH23091.1|	***-	DUF674 family protein [Medicago truncatula]	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf05749g01011.1	gb|AES64035.2|	-***	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf09876g01011.1	sp|Q945T0|RALF_TOBAC	***-	Rapid alkalinization factor	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf00938g01011.1	AT5G22850.1	***-	Eukaryotic aspartyl protease family protein LENGTH=493	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00819g04001.1	sp|Q9UBV2|SE1L1_HUMAN	--*-	Protein sel-1 homolog 1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06385g02016.1	sp|Q2FJN4|AHPC_STAA3	****	Alkyl hydroperoxide reductase subunit C	IPR012336 (Thioredoxin-like fold)	GO:0016209 (antioxidant activity), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Ctg00635g00001.1	sp|A9X4T1|CHD1_BOMMO	*-**	Chromodomain-helicase-DNA-binding protein 1	IPR000330 (SNF2-related), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf00854g05040.1	sp|Q04716|RT03_PETHY	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf02423g03019.1	AT1G09960.1	****	sucrose transporter 4 LENGTH=510	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf05011g01023.1	emb|CAA62734.1|	***-	beta-fructofuranosidase (invertase) [Solanum lycopersicum]	IPR001362 (Glycoside hydrolase, family 32), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00109g08008.1	sp|Q94KD3|VP52A_ARATH	*-*-	Vacuolar protein sorting-associated protein 52 A	IPR007258 (Vps52)	
Niben101Scf08560g01002.1	AT1G24090.1	***-	RNase H family protein LENGTH=353	IPR011320 (Ribonuclease H1, N-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf03392g03011.1	AT1G18160.1	*-**	Protein kinase superfamily protein LENGTH=992	IPR011009 (Protein kinase-like domain), IPR016253 (Integrin-linked protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0009966 (regulation of signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01247g05002.1	AT1G51080.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 101 Blast hits to 98 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 10; Plants - 27; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). LENGTH=285	IPR024530 (Protein of unknown function DUF3820)	
Niben101Scf04290g02002.1	sp|B9DHT4|ARIA_ARATH	*-*-	ARM REPEAT PROTEIN INTERACTING WITH ABF2	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf03504g03006.1	ref|XP_002532545.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29839.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06884g02005.1			Unknown protein		
Niben101Scf00180g03001.1	AT1G61215.1	***-	bromodomain 4 LENGTH=475	IPR001487 (Bromodomain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf04549g09015.1	sp|Q680Q4|SIZ1_ARATH	***-	E3 SUMO-protein ligase SIZ1	IPR003034 (SAP domain), IPR004181 (Zinc finger, MIZ-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09665g01005.1	sp|Q1JPL7|PME18_ARATH	****	Pectinesterase/pectinesterase inhibitor 18	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01655g01026.1	AT2G46070.1	****	mitogen-activated protein kinase 12 LENGTH=372	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01938g01002.1	AT5G06240.1	***-	embryo defective 2735 LENGTH=162		
Niben101Scf00378g02001.1	sp|Q9Y6U7|RN215_HUMAN	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07709g01036.1	AT5G66600.4	***-	Protein of unknown function, DUF547 LENGTH=629	IPR006869 (Domain of unknown function DUF547), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	
Niben101Scf29235g00002.1			Unknown protein		
Niben101Scf02807g03005.1	AT3G21760.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=485	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf08669g00008.1	AT4G33200.1	****	myosin, putative LENGTH=1522	IPR000048 (IQ motif, EF-hand binding site), IPR002710 (Dilute), IPR027401 (Myosin-like IQ motif-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf02911g03012.1	sp|Q96JL9|ZN333_HUMAN	--*-	Zinc finger protein 333	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Ctg14304g00004.1	ref|XP_007026670.1|	*-*-	Transducin family protein / WD-40 repeat family protein, putative isoform 2 [Theobroma cacao] gb|EOY07172.1| Transducin family protein / WD-40 repeat family protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf07482g00003.1	gb|KEH37117.1|	***-	cytochrome P450 family ent-kaurenoic acid oxidase [Medicago truncatula]	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00454g01008.1	AT5G51220.1	*-*-	ubiquinol-cytochrome C chaperone family protein LENGTH=281		
Niben101Scf06153g00011.1	sp|P35145|RPSF_BACME	--**	RNA polymerase sigma-F factor	IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Scf03640g00001.1			Unknown protein		
Niben101Scf02319g05004.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04643g02013.1	sp|Q5LCF4|CINAL_BACFN	*-*-	CinA-like protein	IPR001453 (Molybdopterin binding domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0003824 (catalytic activity), GO:0006777 (Mo-molybdopterin cofactor biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf07231g02019.1	sp|A6QPY8|PIN4_BOVIN	****	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4	IPR000297 (Peptidyl-prolyl cis-trans isomerase, PpiC-type), IPR023058 (Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site)	GO:0016853 (isomerase activity)
Niben101Scf05372g05013.1	sp|Q9FJI1|KAD6_ARATH	****	Adenylate kinase isoenzyme 6 homolog	IPR020618 (Adenylate kinase isoenzyme 6), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004017 (adenylate kinase activity), GO:0005524 (ATP binding)
Niben101Scf00414g04001.1	sp|B3GS44|LRE_ARATH	*-*-	GPI-anchored protein LORELEI		
Niben101Scf01626g02022.1	sp|Q1PF33|TI441_ARATH	***-	Mitochondrial import inner membrane translocase subunit TIM44-1	IPR007379 (Tim44-like domain)	
Niben101Scf28650g00013.1			Unknown protein		
Niben101Scf17988g00018.1	AT3G08890.1	***-	Protein of unknown function, DUF538 LENGTH=170	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf12928g01008.1	AT1G47420.1	***-	succinate dehydrogenase 5 LENGTH=257	IPR025397 (Protein of unknown function DUF4370)	
Niben101Scf00839g00001.1	ref|XP_007047241.1|	***-	TUDOR-SN protein 1 isoform 2, partial [Theobroma cacao] gb|EOX91398.1| TUDOR-SN protein 1 isoform 2, partial [Theobroma cacao]		
Niben101Scf06928g00008.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf15166g01005.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00369g18022.1	emb|CDX80615.1|	--*-	BnaC07g28290D [Brassica napus]		
Niben101Scf00851g03005.1	AT1G03445.1	*-**	Serine/threonine protein phosphatase family protein LENGTH=793	IPR012391 (Serine/threonine protein phosphatase, BSU1), IPR029052 (Metallo-dependent phosphatase-like)	GO:0004721 (phosphoprotein phosphatase activity), GO:0005506 (iron ion binding), GO:0005515 (protein binding), GO:0016787 (hydrolase activity), GO:0030145 (manganese ion binding)
Niben101Scf02364g00004.1	sp|Q969V3|NCLN_HUMAN	***-	Nicalin	IPR008710 (Nicastrin), IPR018247 (EF-Hand 1, calcium-binding site)	GO:0016021 (integral component of membrane), GO:0016485 (protein processing)
Niben101Scf01180g02003.1	sp|A7Y7X5|ZN711_DANRE	--*-	Zinc finger protein 711	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf02399g03002.1	AT2G22590.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=470	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04114g01055.1			Unknown protein		
Niben101Scf12039g00002.1	sp|O24160|TGA21_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05858g00007.1	AT5G61620.1	***-	myb-like transcription factor family protein LENGTH=317	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01727g00006.1	sp|Q5M7C8|HORM1_XENLA	***-	HORMA domain-containing protein 1	IPR003511 (DNA-binding HORMA)	
Niben101Scf01704g03006.1	sp|D7KBH3|CASP6_ARALL	--*-	Casparian strip membrane protein 6	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf18129g00003.1	sp|Q11JK3|NUOD_CHESB	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00150g01014.1	sp|O74476|IMB3_SCHPO	***-	Importin subunit beta-3	IPR007598 (Protein of unknown function DUF577), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf34763g00001.1	sp|Q38898|AKT2_ARATH	*-*-	Potassium channel AKT2/3		
Niben101Scf10036g02008.1			Unknown protein		
Niben101Scf00749g05001.1	emb|CDX78779.1|	***-	BnaA03g06910D [Brassica napus]		
Niben101Scf06357g00007.1	AT5G60620.1	*-*-	glycerol-3-phosphate acyltransferase 9 LENGTH=376		
Niben101Scf02227g04008.1	sp|Q9Z1A9|TBCD8_MOUSE	*-*-	TBC1 domain family member 8	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf02348g00008.1	AT4G24510.1	****	HXXXD-type acyl-transferase family protein LENGTH=421	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00630g05002.1	sp|I1N462|SBT1_SOYBN	*-*-	Subtilisin-like protease		
Niben101Scf13394g00033.1	AT1G08470.1	****	strictosidine synthase-like 3 LENGTH=390	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf06525g03016.1	AT3G50150.1	***-	Plant protein of unknown function (DUF247) LENGTH=509	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf00091g01028.1			Unknown protein		
Niben101Scf23958g00002.1			Unknown protein		
Niben101Scf02242g03012.1	sp|Q9FE67|ERF80_ARATH	*-**	Ethylene-responsive transcription factor 9	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00647g00009.1	AT4G15050.1	***-	Protein of Unknown Function (DUF239) LENGTH=396	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf02170g02013.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf05032g00009.1	sp|Q04789|ILVX_BACSU	****	Acetolactate synthase	IPR012846 (Acetolactate synthase, large subunit, biosynthetic), IPR029035 (DHS-like NAD/FAD-binding domain), IPR029061 (Thiamin diphosphate-binding fold)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0003984 (acetolactate synthase activity), GO:0009082 (branched-chain amino acid biosynthetic process), GO:0030976 (thiamine pyrophosphate binding), GO:0050660 (flavin adenine dinucleotide binding)
Niben101Scf09387g04003.1	AT3G60690.1	***-	SAUR-like auxin-responsive protein family LENGTH=170	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03283g02003.1	sp|Q84K00|NAC78_ARATH	*-*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf12339g01009.1	sp|Q54I81|EI2BA_DICDI	*-*-	Translation initiation factor eIF-2B subunit alpha	IPR000649 (Initiation factor 2B-related)	GO:0044237 (cellular metabolic process)
Niben101Scf04574g08003.1	AT5G65520.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=206	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03602g00007.1	gb|ACF19785.1|	*-*-	NAC transcription factor [Nicotiana tabacum]		
Niben101Scf06017g01005.1	AT4G09465.1	***-	Carbohydrate-binding X8 domain superfamily protein LENGTH=116	IPR012946 (X8 domain)	
Niben101Scf07608g02014.1	ref|WP_019713597.1|	***-	2-oxoglutarate translocator [Bacillus subtilis]	IPR001898 (Sodium/sulphate symporter)	GO:0005215 (transporter activity), GO:0006814 (sodium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf08341g02005.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04370g00020.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf02240g09008.1	sp|Q5ZM74|RN141_CHICK	--*-	RING finger protein 141	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf08026g02004.1	ref|WP_008236074.1|	****	Iron-sulfur cluster assembly protein SufD [Richelia intracellularis] emb|CCH68429.1| Iron-sulfur cluster assembly protein SufD [Richelia intracellularis HH01]	IPR000825 (SUF system FeS cluster assembly, SufBD)	GO:0016226 (iron-sulfur cluster assembly)
Niben101Scf08751g00023.1	sp|Q99PM3|TF2AA_MOUSE	--**	Transcription initiation factor IIA subunit 1	IPR004855 (Transcription factor IIA, alpha/beta subunit), IPR009083 (Transcription factor IIA, helical)	GO:0005672 (transcription factor TFIIA complex), GO:0006367 (transcription initiation from RNA polymerase II promoter)
Niben101Scf00175g01001.1	sp|O82383|U71D1_ARATH	*-*-	UDP-glycosyltransferase 71D1		
Niben101Scf02537g16005.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02068g05017.1	sp|Q4P9P9|LIS1_USTMA	***-	Nuclear distribution protein PAC1	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf09417g00002.1	sp|Q9C689|NSE4A_ARATH	***-	Non-structural maintenance of chromosomes element 4 homolog A	IPR014854 (Non-structural maintenance of chromosome element 4, C-terminal), IPR027786 (Nse4/EID family)	GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0030915 (Smc5-Smc6 complex)
Niben101Scf04158g01006.1	gb|AEW48209.1|	***-	disease resistance protein RGH5 [Solanum huancabambense]		
Niben101Ctg11775g00002.1	sp|Q8LC03|ATB13_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-13	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09788g00012.1	sp|Q5JME8|DI195_ORYSJ	***-	Protein DEHYDRATION-INDUCED 19 homolog 5	IPR008598 (Drought induced 19 protein-like, zinc-binding domain), IPR027935 (Protein dehydration-induced 19, C-terminal)	
Niben101Scf01073g05003.1	sp|P78958|G3P1_SCHPO	***-	Glyceraldehyde-3-phosphate dehydrogenase 1	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0006006 (glucose metabolic process), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0050661 (NADP binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03867g02041.1	sp|O81865|P2A01_ARATH	***-	Protein PHLOEM PROTEIN 2-LIKE A1	IPR025886 (Phloem protein 2-like)	
Niben101Scf00509g00012.1	sp|Q0G9Q1|YCF2_DAUCA	*-*-	Protein Ycf2		
Niben101Scf03238g00008.1	AT4G26180.1	****	Mitochondrial substrate carrier family protein LENGTH=325	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf01578g03011.1	sp|O22213|CKX1_ARATH	****	Cytokinin dehydrogenase 1	IPR016164 (FAD-linked oxidase-like, C-terminal), IPR016166 (FAD-binding, type 2), IPR016170 (Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0009690 (cytokinin metabolic process), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0019139 (cytokinin dehydrogenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03492g01005.1	sp|P93005|PP181_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01773g01011.1	sp|Q949Z1|PGLR4_ARATH	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00621g01007.1	gb|AAS07116.1|	*-*-	expressed protein [Oryza sativa Japonica Group]	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf17422g00020.1	sp|Q6NQI8|LAG13_ARATH	***-	LAG1 longevity assurance homolog 3	IPR016439 (Longevity assurance, LAG1/LAC1)	GO:0016021 (integral component of membrane)
Niben101Scf05201g10002.1	AT5G12300.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=374	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf03864g01012.1	ref|WP_026731793.1|	*-**	iron ABC transporter substrate-binding protein [Fischerella sp. PCC 9605]	IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf09854g00015.1	AT5G27240.1	*-*-	DNAJ heat shock N-terminal domain-containing protein LENGTH=1104	IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf01075g01013.1	sp|Q93ZH0|LYM1_ARATH	***-	LysM domain-containing GPI-anchored protein 1	IPR018392 (LysM domain)	
Niben101Scf05901g07001.1	sp|Q14586|ZN267_HUMAN	--*-	Zinc finger protein 267	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01498g04003.1	sp|O49255|NAC29_ARATH	--**	NAC transcription factor 29	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11105g01015.1	AT1G30070.2	*-*-	SGS domain-containing protein LENGTH=229	IPR008978 (HSP20-like chaperone)	
Niben101Scf02102g01009.1	sp|Q8TYC2|RRP42_METKA	***-	Exosome complex component Rrp42	IPR015847 (Exoribonuclease, phosphorolytic domain 2), IPR020568 (Ribosomal protein S5 domain 2-type fold)	
Niben101Scf04988g01009.1	AT1G63800.1	***-	ubiquitin-conjugating enzyme 5 LENGTH=185	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf07811g00010.1	AT5G10080.1	***-	Eukaryotic aspartyl protease family protein LENGTH=528	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00821g11009.1	sp|Q5JK32|HAK5_ORYSJ	*-**	Potassium transporter 5	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf00348g10006.1	AT5G01210.1	*-**	HXXXD-type acyl-transferase family protein LENGTH=475	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03254g06021.1	emb|CDY66660.1|	*-*-	BnaCnng51840D [Brassica napus]	IPR008889 (VQ)	
Niben101Scf01295g01003.1	AT3G62900.1	*-**	CW-type Zinc Finger LENGTH=1465	IPR011124 (Zinc finger, CW-type)	GO:0008270 (zinc ion binding)
Niben101Scf02074g04004.1	dbj|BAM36190.1|	*-*-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf06087g04011.1	AT5G09830.1	***-	BolA-like family protein LENGTH=93	IPR002634 (BolA protein)	
Niben101Scf02344g04006.1	AT2G33320.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=602	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf09595g03002.1	ref|WP_006622852.1|	--*-	MULTISPECIES: hypothetical protein [Arthr [Arthrospira sp. PCC 8005]	IPR005500 (Protein of unknown function DUF309), IPR023203 (TTHA0068-like domain)	
Niben101Scf20647g00002.1	sp|Q2IBD4|CTTB2_RAT	--**	Cortactin-binding protein 2	IPR014710 (RmlC-like jelly roll fold), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf00360g05009.1	AT2G24610.1	****	cyclic nucleotide-gated channel 14 LENGTH=726	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf04539g01017.1	sp|Q54Z24|PITH1_DICDI	***-	PITH domain-containing protein 1	IPR008979 (Galactose-binding domain-like)	
Niben101Scf05860g01019.1	sp|Q9CHL8|LMRA_LACLA	*-**	Multidrug resistance ABC transporter ATP-binding and permease protein	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf09153g05004.1	ref|XP_010109534.1|	*-*-	Histone-lysine N-methyltransferase [Morus notabilis] gb|EXC23138.1| Histone-lysine N-methyltransferase [Morus notabilis]		
Niben101Scf00631g01018.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02929g05049.1	sp|Q2YA24|NUOD_NITMU	*-**	NADH-quinone oxidoreductase subunit D	IPR001135 (NADH-quinone oxidoreductase, subunit D)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05584g00005.1	sp|Q9SHB5|WRK55_ARATH	*-**	WRKY transcription factor 55	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01826g07014.1	sp|Q94K71|GPPL2_ARATH	****	Haloacid dehalogenase-like hydrolase domain-containing protein	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf00851g01013.1	gb|ACG33563.1|	*-*-	ferredoxin [Zea mays]	IPR012675 (Beta-grasp domain)	
Niben101Scf09365g00025.1	AT3G47890.1	****	Ubiquitin carboxyl-terminal hydrolase-related protein LENGTH=1568	IPR001394 (Peptidase C19, ubiquitin carboxyl-terminal hydrolase), IPR006865 (Domain of unknown function DUF629)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf00031g00003.1	AT3G14940.1	****	phosphoenolpyruvate carboxylase 3 LENGTH=968	IPR021135 (Phosphoenolpyruvate carboxylase)	GO:0003824 (catalytic activity), GO:0006099 (tricarboxylic acid cycle), GO:0008964 (phosphoenolpyruvate carboxylase activity), GO:0015977 (carbon fixation)
Niben101Scf01094g00008.1	AT5G46060.1	***-	Protein of unknown function, DUF599 LENGTH=248	IPR006747 (Protein of unknown function DUF599)	
Niben101Scf06837g00015.1	sp|O82352|RTNLE_ARATH	***-	Reticulon-like protein B5	IPR003388 (Reticulon), IPR018819 (Protein of unknown function DUF2418)	
Niben101Scf08637g01014.1	sp|Q86IZ4|IPP2_DICDI	--**	Protein phosphatase inhibitor 2	IPR007062 (Protein phosphatase inhibitor 2 (IPP-2))	GO:0004864 (protein phosphatase inhibitor activity), GO:0009966 (regulation of signal transduction), GO:0043666 (regulation of phosphoprotein phosphatase activity)
Niben101Scf17802g02002.1	ref|XP_002512582.1|	****	nucleic acid binding protein, putative [Ricinus communis] gb|EEF50034.1| nucleic acid binding protein, putative [Ricinus communis]	IPR000467 (G-patch domain), IPR007087 (Zinc finger, C2H2)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf12197g03002.1	sp|Q9JJX7|TYDP2_MOUSE	***-	Tyrosyl-DNA phosphodiesterase 2	IPR001876 (Zinc finger, RanBP2-type), IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0008270 (zinc ion binding)
Niben101Scf00171g00004.1	sp|Q8U446|NTPA_PYRFU	*-*-	Non-canonical purine NTP pyrophosphatase	IPR029001 (Inosine triphosphate pyrophosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf00825g04001.1	sp|Q3MHX3|RBM4_BOVIN	*-**	RNA-binding protein 4	IPR007201 (RNA recognition motif 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf10254g01004.1	sp|Q9LVQ5|PP432_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05395g03008.1	ref|XP_007018106.1|	--*-	Localized to the inner membrane of the chloroplast [Theobroma cacao] gb|EOY15331.1| Localized to the inner membrane of the chloroplast [Theobroma cacao]		
Niben101Scf04703g01002.1			Unknown protein		
Niben101Scf01351g00003.1	ref|WP_031971134.1|	--*-	autotransporter adhesin, partial [Acinetobacter baumannii]		
Niben101Scf01451g00002.1	sp|Q9LT79|PUB25_ARATH	***-	U-box domain-containing protein 25	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf04740g01001.1	emb|CDX67716.1|	***-	BnaA07g17560D [Brassica napus]	IPR020478 (AT hook-like)	
Niben101Scf01479g01004.1	AT2G43000.1	***-	NAC domain containing protein 42 LENGTH=275	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03323g01014.1	AT4G08850.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf02108g02012.1			Unknown protein		
Niben101Scf10053g00023.1	sp|Q4PB75|GEM1_USTMA	*-**	Mitochondrial Rho GTPase 1	IPR013684 (Mitochondrial Rho-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf01777g03033.1	sp|Q9XIK5|Y1045_ARATH	--*-	B3 domain-containing protein	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf05749g02032.1			Unknown protein		
Niben101Scf03576g01034.1	sp|Q03065|RPSB_NOSS1	****	RNA polymerase sigma-B factor	IPR014284 (RNA polymerase sigma-70 like domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Scf05188g03028.1	sp|Q6C186|CLF1_YARLI	*-*-	Pre-mRNA-splicing factor CLF1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Scf05862g00004.1	AT4G27280.1	****	Calcium-binding EF-hand family protein LENGTH=130	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf05360g01006.1	AT1G29790.1	*-*-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=378	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf14939g00008.1	ref|XP_007031860.1|	***-	P-loop containing nucle isoform 2 [Theobroma cacao]		
Niben101Scf05322g00009.1			Unknown protein		
Niben101Scf04931g01002.1			Unknown protein		
Niben101Scf03714g03005.1	gb|KEH24914.1|	***-	senescence-associated protein [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf00303g00002.1	sp|P54928|IMP3_SOLLC	****	Inositol monophosphatase 3	IPR000760 (Inositol monophosphatase)	GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf02425g04007.1			Unknown protein		
Niben101Scf02455g03021.1	gb|AAD24658.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf03643g05003.1	gb|KEH32558.1|	--*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf05140g00002.1	sp|Q9LJK3|LAG12_ARATH	***-	LAG1 longevity assurance homolog 2	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf04044g01027.1	emb|CDY07628.1|	*-*-	BnaA03g18830D [Brassica napus]		
Niben101Scf04366g00007.1	sp|O49250|CYCLD_ANTMA	*-*-	Transcription factor CYCLOIDEA	IPR005333 (Transcription factor, TCP)	
Niben101Scf02250g03013.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00539g05012.1	AT1G76040.2	****	calcium-dependent protein kinase 29 LENGTH=561	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08137g01004.1	gb|AAU90328.2|	*-*-	Pentatricopeptide repeat domain containing protein, putative [Solanum demissum]		
Niben101Scf08291g00009.1	sp|Q7XUN2|MAD17_ORYSJ	--*-	MADS-box transcription factor 17	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00474g13005.1	emb|CDY28412.1|	--*-	BnaA05g18280D [Brassica napus]	IPR008004 (Uncharacterised protein family UPF0503)	
Niben101Scf01502g00018.1	AT1G50920.1	****	Nucleolar GTP-binding protein LENGTH=671	IPR006073 (GTP binding domain), IPR010674 (Nucleolar GTP-binding protein 1, Rossman-fold domain), IPR011619 (Ferrous iron transport protein B, N-terminal), IPR012973 (NOG, C-terminal), IPR024926 (Nucleolar GTP-binding protein 1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005730 (nucleolus), GO:0015093 (ferrous iron transmembrane transporter activity), GO:0015684 (ferrous iron transport), GO:0016021 (integral component of membrane)
Niben101Scf02821g06008.1	sp|Q8CGC6|RBM28_MOUSE	--**	RNA-binding protein 28	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03817g03024.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf04120g03020.1	AT5G48390.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=936		
Niben101Scf17384g00004.1	sp|Q4VSI4|UBP7_RAT	*-**	Ubiquitin carboxyl-terminal hydrolase 7	IPR006615 (Peptidase C19, ubiquitin-specific peptidase, DUSP domain), IPR028889 (Ubiquitin specific protease domain), IPR029071 (Ubiquitin-related domain)	GO:0004843 (ubiquitin-specific protease activity), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf01658g02012.1	sp|Q9FND8|PP409_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf09760g01026.1	sp|D1KF50|SRS2L_ARATH	****	ATP-dependent DNA helicase SRS2-like protein	IPR000212 (DNA helicase, UvrD/REP type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0004003 (ATP-dependent DNA helicase activity), GO:0005524 (ATP binding), GO:0016787 (hydrolase activity)
Niben101Scf05824g12003.1	AT4G31820.1	***-	Phototropic-responsive NPH3 family protein LENGTH=571	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain), IPR029961 (BTB/POZ domain-containing protein NPY1)	GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0048513 (organ development), GO:0060918 (auxin transport)
Niben101Scf02500g01013.1	AT2G25790.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=960		
Niben101Scf02043g00018.1	sp|Q6NS46|RRP5_MOUSE	*-*-	Protein RRP5 homolog	IPR008847 (Suppressor of forked), IPR011990 (Tetratricopeptide-like helical domain), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006396 (RNA processing), GO:0006397 (mRNA processing)
Niben101Scf07034g06019.1	AT4G08850.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf02336g01004.1			Unknown protein		
Niben101Scf08926g08029.1	sp|B2GI63|MSHD_KOCRD	--**	Mycothiol acetyltransferase	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf02887g00002.1	sp|Q8LAU9|GATA1_ARATH	****	GATA transcription factor 1	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02172g06031.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf05675g01016.1	sp|Q84KJ6|AMT31_ORYSJ	****	Ammonium transporter 3 member 1	IPR001905 (Ammonium transporter), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf05374g04014.1	sp|Q39117|TGT2_ARATH	*-*-	Trihelix transcription factor GT-2	IPR017877 (Myb-like domain)	
Niben101Scf07013g00006.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR018392 (LysM domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00470g03009.1	sp|B0G159|MCFC_DICDI	***-	Mitochondrial substrate carrier family protein C	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf37019g00003.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08954g02005.1	AT5G28530.1	***-	FAR1-related sequence 10 LENGTH=685	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type), IPR018289 (MULE transposase domain)	GO:0008270 (zinc ion binding)
Niben101Scf06358g00014.1	sp|Q8L548|TCX3_ARATH	*-*-	Protein tesmin/TSO1-like CXC 3		
Niben101Scf06678g03002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf28185g00013.1	gb|AHB32112.1|	***-	chalcone isomerase [Camellia sinensis]	IPR016087 (Chalcone isomerase)	GO:0016872 (intramolecular lyase activity)
Niben101Scf02351g07005.1	sp|P27522|CB13_SOLLC	***-	Chlorophyll a-b binding protein 8, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf00289g07001.1	sp|Q6AWW5|Y5262_ARATH	*-*-	Ankyrin repeat-containing protein	IPR020683 (Ankyrin repeat-containing domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	GO:0005515 (protein binding)
Niben101Scf00332g12011.1	AT5G22510.1	***-	alkaline/neutral invertase LENGTH=617	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf08112g01016.1	sp|Q8K1J5|SDE2_MOUSE	*-*-	Protein SDE2 homolog	IPR024974 (Sde2 N-terminal domain), IPR029071 (Ubiquitin-related domain)	
Niben101Scf12868g00008.1	sp|Q07439|HSP71_RAT	***-	Heat shock 70 kDa protein 1A/1B	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf03179g00011.1	ref|XP_003598325.1|	***-	Zinc finger SWIM domain-containing protein [Medicago truncatula] gb|AES68576.1| zinc finger SWIM domain protein [Medicago truncatula]		
Niben101Scf03141g10006.1	sp|Q8RYM9|LAC2_ORYSJ	***-	Laccase-2	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06423g00004.1	sp|Q8GYX3|MP705_ARATH	*-**	Microtubule-associated protein 70-5	IPR009768 (Microtubule-associated protein 70)	GO:0007010 (cytoskeleton organization), GO:0008017 (microtubule binding)
Niben101Ctg12655g00004.1	sp|Q9AUE0|CALS1_ARATH	*-**	Callose synthase 1	IPR003440 (Glycosyl transferase, family 48)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf06986g01012.1	emb|CDY50122.1|	***-	BnaC04g32570D [Brassica napus]		
Niben101Scf02090g05002.1	sp|Q32LS6|ABHDD_DANRE	--*-	Alpha/beta hydrolase domain-containing protein 13		
Niben101Scf00270g16014.1	sp|Q13303|KCAB2_HUMAN	***-	Voltage-gated potassium channel subunit beta-2	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf22578g00005.1	sp|P15688|NU2M_BETVU	*-*-	NADH-ubiquinone oxidoreductase chain 2		
Niben101Scf02566g01004.1	AT2G25770.1	***-	Polyketide cyclase/dehydrase and lipid transport superfamily protein LENGTH=167	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf07089g00006.1	AT2G36770.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00100g00011.1	AT4G00340.1	*-**	receptor-like protein kinase 4 LENGTH=818	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08812g00007.1	sp|Q54X82|AP1B_DICDI	****	AP-1 complex subunit beta	IPR009028 (Coatomer/calthrin adaptor appendage, C-terminal subdomain), IPR012295 (Beta2-adaptin/TBP, C-terminal domain), IPR013041 (Coatomer/clathrin adaptor appendage, Ig-like subdomain), IPR015151 (Beta-adaptin appendage, C-terminal subdomain), IPR016024 (Armadillo-type fold), IPR026739 (AP complex subunit beta)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030131 (clathrin adaptor complex)
Niben101Scf11037g02040.1			Unknown protein		
Niben101Scf05137g01012.1	sp|Q5HZA3|ZCH12_RAT	--*-	Zinc finger CCHC domain-containing protein 12		
Niben101Scf03326g05004.1			Unknown protein		
Niben101Scf04918g06009.1	AT5G34930.1	*-**	arogenate dehydrogenase LENGTH=640	IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR012070 (Arogenate/prephenate dehydrogenase)	GO:0004665 (prephenate dehydrogenase (NADP+) activity), GO:0006571 (tyrosine biosynthetic process), GO:0008977 (prephenate dehydrogenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01689g07011.1	AT5G28770.2	****	bZIP transcription factor family protein LENGTH=314	IPR004827 (Basic-leucine zipper domain), IPR020983 (Basic leucine-zipper, C-terminal)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02622g07006.1	sp|Q9BU70|NAP1_HUMAN	*-*-	Nef-associated protein 1	IPR001378 (Uncharacterised domain UPF0066), IPR023370 (TsaA-like domain)	
Niben101Scf01887g04004.1	sp|Q9M099|SCP24_ARATH	*-**	Serine carboxypeptidase 24	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00176g05002.1	AT1G75710.1	*-*-	C2H2-like zinc finger protein LENGTH=462	IPR007087 (Zinc finger, C2H2), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain)	GO:0003950 (NAD+ ADP-ribosyltransferase activity), GO:0046872 (metal ion binding)
Niben101Scf18774g02001.1	sp|Q9SI37|WRKY1_ARATH	--**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01434g02006.1	AT1G55000.1	****	peptidoglycan-binding LysM domain-containing protein LENGTH=221	IPR001810 (F-box domain), IPR018392 (LysM domain)	GO:0005515 (protein binding)
Niben101Ctg16502g00003.1	sp|Q9XJ60|MAD50_ORYSJ	****	MADS-box transcription factor 50	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03873g00016.1	AT5G45275.1	***-	Major facilitator superfamily protein LENGTH=570	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf00854g01091.1	sp|P60620|COX1_ARATH	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg13395g00001.1	sp|Q9S823|LNG2_ARATH	*-*-	Protein LONGIFOLIA 2	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf03448g03003.1	gb|ACG39388.1|	***-	adenylate cyclase [Zea mays]	IPR023577 (CYTH-like domain)	
Niben101Scf02537g12003.1	AT1G78240.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=684	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02751g04010.1	sp|Q43125|CRY1_ARATH	***-	Cryptochrome-1	IPR002081 (Cryptochrome/DNA photolyase, class 1)	GO:0003913 (DNA photolyase activity), GO:0006281 (DNA repair)
Niben101Scf00568g04012.1	sp|Q8S8U1|YCF2B_ATRBE	*-*-	Protein Ycf2 B	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Ctg14231g00004.1			Unknown protein		
Niben101Scf08007g02020.1	sp|P81898|PNAA_PRUDU	*-*-	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A		
Niben101Scf10464g00027.1			Unknown protein		
Niben101Scf04738g05019.1	sp|C3PMM6|DNAJ_RICAE	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf06286g01005.1			Unknown protein		
Niben101Scf37982g00001.1			Unknown protein		
Niben101Scf04772g00011.1	sp|Q76NT9|ACCO1_DICDI	*-*-	1-aminocyclopropane-1-carboxylate oxidase	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf06665g01003.1	gb|AES95732.2|	****	bZIP transcription factor family protein [Medicago truncatula]	IPR012900 (G-box binding, MFMR)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf13594g00001.1	sp|Q39644|LEA5_CITSI	***-	Late embryogenesis abundant protein Lea5	IPR004926 (Late embryogenesis abundant protein, LEA-5)	GO:0006950 (response to stress)
Niben101Scf01611g08007.1	AT5G25060.1	****	RNA recognition motif (RRM)-containing protein LENGTH=946	IPR000061 (SWAP/Surp), IPR003034 (SAP domain), IPR006569 (CID domain), IPR008942 (ENTH/VHS), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR013170 (mRNA splicing factor, Cwf21)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0006396 (RNA processing)
Niben101Scf03295g05001.1	gb|ABF97907.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf00662g01019.1	emb|CDX73201.1|	***-	BnaC06g36490D [Brassica napus]		
Niben101Scf14695g00003.1			Unknown protein		
Niben101Scf00691g02032.1	sp|Q12546|PPA_ASPFI	--*-	Acid phosphatase	IPR029052 (Metallo-dependent phosphatase-like)	
Niben101Scf00929g03009.1	AT2G18600.1	***-	Ubiquitin-conjugating enzyme family protein LENGTH=185	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf02792g01020.1	sp|Q9FGY9|PNG1_ARATH	*-*-	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase		
Niben101Scf00449g02001.1	sp|B3QU88|HIS3_CHLT3	*-**	Phosphoribosyl-AMP cyclohydrolase	IPR002496 (Phosphoribosyl-AMP cyclohydrolase domain), IPR021130 (Phosphoribosyl-ATP pyrophosphohydrolase-like)	GO:0000105 (histidine biosynthetic process), GO:0004635 (phosphoribosyl-AMP cyclohydrolase activity), GO:0004636 (phosphoribosyl-ATP diphosphatase activity)
Niben101Scf01916g00006.1			Unknown protein		
Niben101Scf05902g01001.1	emb|CDX93846.1|	***-	BnaA09g24460D [Brassica napus]		
Niben101Scf05929g07004.1	sp|O22781|SUVH2_ARATH	****	Histone-lysine N-methyltransferase family member SUVH2	IPR001214 (SET domain), IPR003105 (SRA-YDG), IPR007728 (Pre-SET domain), IPR015947 (PUA-like domain), IPR025794 (Histone H3-K9 methyltransferase, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016571 (histone methylation), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0042393 (histone binding)
Niben101Scf02753g01003.1	sp|P29397|NUSG_THEMA	*-**	Transcription termination/antitermination protein NusG	IPR006645 (NusG, N-terminal), IPR008991 (Translation protein SH3-like domain)	GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04067g06016.1	sp|F4K4L7|TAF4B_ARATH	****	Transcription initiation factor TFIID subunit 4b	IPR007900 (Transcription initiation factor TFIID component TAF4), IPR009072 (Histone-fold), IPR022003 (RST domain of plant C-terminal)	GO:0005669 (transcription factor TFIID complex), GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity)
Niben101Scf10440g00004.1	sp|P11959|DLDH1_GEOSE	***-	Dihydrolipoyl dehydrogenase	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0016668 (oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06864g00005.1	sp|P19173|COX5C_IPOBA	***-	Cytochrome c oxidase subunit 5C	IPR008432 (Cytochrome c oxidase subunit Vc)	GO:0005746 (mitochondrial respiratory chain)
Niben101Scf01732g01012.1	AT4G12310.1	*-*-	cytochrome P450, family 706, subfamily A, polypeptide 5 LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02033g02020.1	sp|Q5GUR8|RHLB_XANOR	*-**	ATP-dependent RNA helicase RhlB	IPR001650 (Helicase, C-terminal), IPR012562 (GUCT), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus)
Niben101Scf18401g00007.1	emb|CDY29160.1|	***-	BnaC09g15570D [Brassica napus]		
Niben101Scf00415g01007.1	sp|Q9NU22|MDN1_HUMAN	*-*-	Midasin		
Niben101Scf05736g01002.1	gb|KEH18761.1|	--*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf17046g03007.1	AT1G11260.1	****	sugar transporter 1 LENGTH=522	IPR005828 (General substrate transporter)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00539g01005.1	sp|P92948|CDC5L_ARATH	*-*-	Cell division cycle 5-like protein		
Niben101Scf03735g05003.1	sp|Q56XU4|C3H6_ARATH	*-*-	Zinc finger CCCH domain-containing protein 6	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Ctg15619g00001.1	AT4G35690.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=284	IPR004320 (Protein of unknown function DUF241, plant), IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf04537g01013.1	ref|WP_021224630.1|	--*-	DNA polymerase [Sphingobium lactosutens] gb|EQB17916.1| DNA polymerase [Sphingobium lactosutens DS20]		
Niben101Scf13168g00009.1	sp|Q8GXR5|PPCS1_ARATH	***-	Phosphopantothenate--cysteine ligase 1	IPR007085 (DNA/pantothenate metabolism flavoprotein, C-terminal)	
Niben101Scf02513g11003.1	sp|Q9XIC7|SERK2_ARATH	*-*-	Somatic embryogenesis receptor kinase 2	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf07744g00015.1	AT3G01750.1	***-	Ankyrin repeat family protein LENGTH=664	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf02647g04003.1	AT2G05310.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=125		
Niben101Scf11812g00029.1	sp|Q9ZNV9|AHP1_ARATH	*-*-	Histidine-containing phosphotransfer protein 1	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity)
Niben101Scf04183g00001.1	sp|B0V2S2|DCR1B_DANRE	***-	5' exonuclease Apollo	IPR001279 (Beta-lactamase-like), IPR011084 (DNA repair metallo-beta-lactamase)	
Niben101Scf06058g00028.1	ref|XP_002512360.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF49812.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06806g02005.1	sp|Q9SKB3|PARG1_ARATH	*-*-	Poly(ADP-ribose) glycohydrolase 1		
Niben101Scf30439g00001.1	gb|AFO69217.1|	*-*-	cytochrome c biogenesis FN (mitochondrion) [Gossypium hirsutum]		
Niben101Scf01184g14003.1	emb|CDX94272.1|	*-*-	BnaC02g29320D [Brassica napus]		
Niben101Scf03714g03004.1	sp|B5YE43|MIAA_DICT6	*-**	tRNA dimethylallyltransferase	IPR002627 (tRNA isopentenyltransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf00148g01007.1	sp|O04887|PME2_CITSI	*-**	Pectinesterase 2	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf03781g03001.1	sp|P42753|CCD31_ARATH	***-	Cyclin-D3-1	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf01400g00001.1	emb|CDY10933.1|	*-*-	BnaA03g45920D [Brassica napus]	IPR004314 (Domain of unknown function DUF239)	
Niben101Scf06091g07004.1	sp|Q9LND8|ADSL2_ARATH	***-	Delta-9 desaturase-like 2 protein	IPR015876 (Fatty acid desaturase, type 1, core)	GO:0006629 (lipid metabolic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0055114 (oxidation-reduction process)
Niben101Scf02151g03003.1	gb|ABB47203.2|	*-*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf01392g00014.1	sp|A2RRP1|NBAS_HUMAN	*-*-	Neuroblastoma-amplified sequence	IPR013244 (Sec39 domain), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0006890 (retrograde vesicle-mediated transport, Golgi to ER)
Niben101Scf13839g00002.1	AT5G54800.1	***-	glucose 6-phosphate/phosphate translocator 1 LENGTH=388	IPR004696 (Triose phosphate/phosphoenolpyruvate translocator), IPR004853 (Triose-phosphate transporter domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf09696g01103.1	gb|ACM46775.1|	*-*-	matR [Abies sibirica]		
Niben101Scf00317g00006.1	sp|O23305|Y4449_ARATH	*-*-	FHA domain-containing protein	IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf05109g04004.1	sp|Q84N34|HHP2_ARATH	***-	Heptahelical transmembrane protein 2	IPR004254 (AdipoR/Haemolysin-III-related)	GO:0016021 (integral component of membrane)
Niben101Scf09960g01009.1	sp|Q9SB67|NRT32_ARATH	***-	High-affinity nitrate transporter 3.2		
Niben101Scf02357g00006.1	AT3G58790.1	****	galacturonosyltransferase 15 LENGTH=540	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf00742g01037.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07260g01019.1	ref|NP_001045022.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf01811g01003.1			Unknown protein		
Niben101Scf01848g03003.1	sp|Q6NPT8|PP2B1_ARATH	***-	F-box protein PP2-B1	IPR025886 (Phloem protein 2-like)	
Niben101Scf01146g02009.1	ref|XP_002518114.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF44247.1| conserved hypothetical protein [Ricinus communis]		
Niben101Ctg12345g00002.1	gb|ADB93073.1|	--*-	conserved hypothetical protein [Jatropha curcas] gb|KDP34130.1| hypothetical protein JCGZ_07701 [Jatropha curcas]		
Niben101Scf06926g03014.1	AT5G05680.1	***-	nuclear pore complex protein-related LENGTH=810	IPR017986 (WD40-repeat-containing domain), IPR019321 (Nucleoporin Nup88)	GO:0005515 (protein binding)
Niben101Scf04714g00007.1	ref|NP_001061023.1|	--*-	product [Oryza sativa Japonica Group]	IPR027854 (Protein of unknown function DUF4535)	
Niben101Scf01983g07002.1	sp|P45037|CCMF_HAEIN	--**	Cytochrome c-type biogenesis protein CcmF	IPR003567 (Cytochrome c-type biogenesis protein)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf00892g00005.1	sp|Q9Y6I4|UBP3_HUMAN	****	Ubiquitin carboxyl-terminal hydrolase 3	IPR001607 (Zinc finger, UBP-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0008270 (zinc ion binding), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf06618g00010.1	sp|P83332|TLP1_PRUPE	***-	Thaumatin-like protein 1	IPR001938 (Thaumatin)	
Niben101Scf10254g01005.1			Unknown protein		
Niben101Scf02062g09003.1	sp|A9M9N4|CCME_BRUC2	****	Cytochrome c-type biogenesis protein CcmE	IPR004329 (CcmE/CycJ protein)	GO:0005886 (plasma membrane), GO:0017003 (protein-heme linkage), GO:0017004 (cytochrome complex assembly)
Niben101Scf13085g00001.1	sp|P48504|QCR6_SOLTU	*-*-	Cytochrome b-c1 complex subunit 6	IPR023184 (Ubiquinol-cytochrome C reductase hinge domain)	
Niben101Scf00991g06003.1	gb|AFI47463.1|	****	invertase inhibitor [Solanum tuberosum]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf03823g02016.1	AT3G14270.1	****	phosphatidylinositol-4-phosphate 5-kinase family protein LENGTH=1791	IPR002423 (Chaperonin Cpn60/TCP-1), IPR002498 (Phosphatidylinositol-4-phosphate 5-kinase, core), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027409 (GroEL-like apical domain), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0044267 (cellular protein metabolic process), GO:0046488 (phosphatidylinositol metabolic process), GO:0046872 (metal ion binding)
Niben101Scf00854g11041.1			Unknown protein		
Niben101Scf06387g02011.1			Unknown protein		
Niben101Scf02797g00005.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02468g02007.1	AT3G05420.2	****	acyl-CoA binding protein 4 LENGTH=669	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf02740g03011.1	emb|CDY16932.1|	***-	BnaC09g40590D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf02048g01009.1	sp|Q41916|CYT5_ARATH	****	Cysteine proteinase inhibitor 5	IPR000010 (Proteinase inhibitor I25, cystatin), IPR027214 (Cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf03365g01005.1	sp|O65351|SUBL_ARATH	--*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf07444g03005.1			Unknown protein		
Niben101Scf09623g00014.1	AT1G54385.1	***-	ARM repeat superfamily protein LENGTH=560	IPR007022 (Gem-associated protein 2), IPR016024 (Armadillo-type fold)	GO:0000387 (spliceosomal snRNP assembly), GO:0000398 (mRNA splicing, via spliceosome), GO:0005488 (binding), GO:0005681 (spliceosomal complex)
Niben101Scf06668g00002.1	AT5G53300.1	***-	ubiquitin-conjugating enzyme 10 LENGTH=148	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf07503g00009.1	sp|Q94JM3|ARFB_ARATH	*-*-	Auxin response factor 2	IPR015300 (DNA-binding pseudobarrel domain)	
Niben101Scf00537g02025.1	sp|Q6P7N4|HMCES_XENTR	***-	Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein	IPR003738 (Protein of unknown function DUF159)	
Niben101Scf02755g06018.1	AT4G27790.1	****	Calcium-binding EF hand family protein LENGTH=345	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01984g00021.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf20553g00005.1	sp|Q84WW6|ASHH1_ARATH	*-*-	Histone-lysine N-methyltransferase ASHH1		
Niben101Scf10560g00010.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09708g03002.1	sp|P41918|RANA1_TOBAC	*-**	GTP-binding nuclear protein Ran-A1	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf01972g03001.1	sp|Q5F3N5|KLH14_CHICK	*-*-	Kelch-like protein 14	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf01236g00015.1	AT3G06483.1	***-	pyruvate dehydrogenase kinase LENGTH=366	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR005467 (Signal transduction histidine kinase, core), IPR018955 (Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase, N-terminal)	
Niben101Scf00090g07003.1	AT1G07700.3	***-	Thioredoxin superfamily protein LENGTH=217	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf10579g01023.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf01876g01019.1	sp|O24172|ALL6_OLEEU	***-	Major pollen allergen Ole e 6	IPR015333 (Pollen allergen ole e 6)	
Niben101Scf08015g04003.1	gb|ABS79309.1|	*-*-	At4g36060-like protein [Arabidopsis lyrata subsp. lyrata]		
Niben101Scf08111g01009.1	sp|Q5Z5Q3|C3H43_ORYSJ	--*-	Zinc finger CCCH domain-containing protein 43		
Niben101Scf04400g03009.1	emb|CDY20559.1|	*-*-	BnaC07g12260D [Brassica napus]		
Niben101Scf05323g02007.1	AT2G14510.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=868	IPR001611 (Leucine-rich repeat), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0005515 (protein binding)
Niben101Scf14708g00003.1	sp|Q9S7P5|SPL12_ARATH	*-**	Squamosa promoter-binding-like protein 12	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf00556g00016.1	AT2G40960.1	****	Single-stranded nucleic acid binding R3H protein LENGTH=351	IPR001374 (Single-stranded nucleic acid binding R3H), IPR024771 (SUZ domain)	GO:0003676 (nucleic acid binding)
Niben101Scf04950g00014.1	sp|Q66IF1|REEP6_DANRE	*-*-	Receptor expression-enhancing protein 6	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf10336g03006.1	sp|Q9HSF6|RNH_HALSA	*-**	Ribonuclease HI	IPR011320 (Ribonuclease H1, N-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf01463g07016.1	AT1G10530.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=166	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf00219g04022.1	gb|ACG28254.1|	***-	seven transmembrane domain protein [Zea mays]	IPR019164 (Protein of unknown function DUF2053, membrane)	
Niben101Scf05242g00001.1	sp|Q38857|XTH22_ARATH	*-**	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01936g05005.1	sp|Q1C812|ZNUC_YERPA	*-**	Zinc import ATP-binding protein ZnuC	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf00176g07005.1	sp|Q8GYA4|CRK10_ARATH	****	Cysteine-rich receptor-like protein kinase 10	IPR002902 (Gnk2-homologous domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10505g00012.1	AT5G66690.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=481	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06545g00009.1	sp|P0CP89|PPIL4_CRYNB	*-**	Peptidyl-prolyl cis-trans isomerase-like 4	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf09560g02017.1	AT1G18160.1	*-**	Protein kinase superfamily protein LENGTH=992	IPR000270 (Phox/Bem1p), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00182g07004.1	sp|B1YA36|PSB1_PYRNV	****	Proteasome subunit beta 1	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf11319g00005.1	sp|Q9FH04|ADHL7_ARATH	*-*-	Alcohol dehydrogenase-like 7	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01578g03010.1	sp|A7RWP6|EIF3E_NEMVE	*-**	Eukaryotic translation initiation factor 3 subunit E	IPR016650 (Eukaryotic translation initiation factor 3 subunit E)	GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf07640g01004.1	AT5G01540.1	*-*-	lectin receptor kinase a4.1 LENGTH=682	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01150g02010.1	sp|P84227|H32_BOVIN	***-	Histone H3.2	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	
Niben101Scf01512g00006.1	sp|P44933|KEFX_HAEIN	*-*-	Glutathione-regulated potassium-efflux system protein	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf06004g00021.1	sp|Q9SI78|PPR93_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02502g15003.1	sp|Q9LEX0|P2A13_ARATH	***-	F-box protein PP2-A13	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf05467g00008.1	sp|P11612|PPY_DROME	****	Serine/threonine-protein phosphatase PP-Y	IPR011236 (Serine/threonine protein phosphatase 5), IPR029052 (Metallo-dependent phosphatase-like)	GO:0004721 (phosphoprotein phosphatase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006470 (protein dephosphorylation), GO:0016787 (hydrolase activity)
Niben101Scf02298g01014.1	sp|Q43735|PER27_ARATH	****	Peroxidase 27	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09861g01014.1	sp|Q6YW64|DRB4_ORYSJ	*-**	Double-stranded RNA-binding protein 4	IPR011907 (Ribonuclease III)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0016075 (rRNA catabolic process)
Niben101Scf04184g03006.1	gb|ABE66195.1|	****	zinc finger protein-like protein [Arabidopsis thaliana]	IPR002867 (Zinc finger, C6HC-type), IPR012337 (Ribonuclease H-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09417g00001.1	AT2G44430.1	*-**	DNA-binding bromodomain-containing protein LENGTH=646	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf03634g10012.1	AT5G04870.1	****	calcium dependent protein kinase 1 LENGTH=610	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08111g02011.1	sp|Q9LQU4|PCR2_ARATH	***-	Protein PLANT CADMIUM RESISTANCE 2	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf00853g04011.1	ref|XP_007026001.1|	***-	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao] gb|EOY28623.1| Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf02597g07009.1	AT1G21640.2	****	NAD kinase 2 LENGTH=999	IPR002504 (Inorganic polyphosphate/ATP-NAD kinase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0003951 (NAD+ kinase activity), GO:0006741 (NADP biosynthetic process), GO:0008152 (metabolic process), GO:0019674 (NAD metabolic process)
Niben101Scf01302g03003.1	sp|Q61LA8|ARF12_CAEBR	***-	ADP-ribosylation factor 1-like 2	IPR003579 (Small GTPase superfamily, Rab type), IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf05417g00005.1	sp|Q9LIG2|RLK6_ARATH	--*-	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf32481g00007.1	gb|ABF93495.1|	*-*-	2-phosphoglycerate kinase, putative, expressed [Oryza sativa Japonica Group]		
Niben101Scf07428g00010.1	sp|Q683D5|PUB37_ARATH	*-*-	U-box domain-containing protein 37	IPR011990 (Tetratricopeptide-like helical domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf03842g09001.1	sp|Q1PFK0|FBL32_ARATH	*-*-	F-box/LRR-repeat protein	IPR001810 (F-box domain), IPR013101 (Leucine-rich repeat 2)	GO:0005515 (protein binding)
Niben101Scf11361g00013.1	sp|Q9LQL2|PTR14_ARATH	***-	Protein NRT1/ PTR FAMILY 7.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00140g00002.1	emb|CDY63903.1|	*-*-	BnaA01g34680D [Brassica napus]		
Niben101Scf00207g05017.1	AT4G38040.1	*-*-	Exostosin family protein LENGTH=425	IPR004263 (Exostosin-like)	
Niben101Scf13263g00003.1	gb|ACF22033.1|	*-*-	NBS-coding resistance gene protein [Nicotiana tabacum]		
Niben101Scf00332g09011.1	sp|Q9FP29|KNOS1_ORYSJ	***-	Homeobox protein knotted-1-like 1	IPR005539 (ELK), IPR005540 (KNOX1), IPR005541 (KNOX2), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06357g00008.1	sp|P97872|FMO5_MOUSE	*-**	Dimethylaniline monooxygenase [N-oxide-forming] 5	IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10436g01013.1	sp|O59952|LIP_THELA	*-*-	Lipase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf03545g00011.1	gb|KEH32990.1|	*-*-	DCD (development and cell death) domain protein [Medicago truncatula]	IPR013989 (Development/cell death domain)	
Niben101Ctg12784g00001.1	sp|Q43043|PME_PETIN	*-**	Pectinesterase	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf09620g07015.1	AT1G16860.1	***-	Ubiquitin-specific protease family C19-related protein LENGTH=474		
Niben101Scf02929g04039.1			Unknown protein		
Niben101Ctg13447g00002.1	ref|XP_007029245.1|	--*-	Chromatin remodeling factor18 isoform 1 [Theobroma cacao] gb|EOY09747.1| Chromatin remodeling factor18 isoform 1 [Theobroma cacao]		
Niben101Scf02240g03015.1	sp|Q9C8G9|AB1C_ARATH	***-	ABC transporter C family member 1	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf00485g02025.1			Unknown protein		
Niben101Scf30112g00004.1	sp|Q02854|NUXM_NEUCR	-**-	NADH-ubiquinone oxidoreductase 20.9 kDa subunit	IPR019721 (NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminal)	
Niben101Scf01983g14004.1	AT1G53450.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=453		
Niben101Scf00747g09002.1	gb|AET01824.2|	*-*-	DNA-binding protein, putative [Medicago truncatula]		
Niben101Scf00966g00010.1	gb|KEH19720.1|	*-*-	RING/FYVE/PHD zinc finger protein [Medicago truncatula]	IPR022143 (Protein of unknown function DUF3675)	
Niben101Scf10232g03006.1	gb|AES92006.2|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf02531g00007.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05609g00007.1			Unknown protein		
Niben101Scf10476g02017.1	tpg|DAA39007.1|	--*-	TPA: hypothetical protein ZEAMMB73_811988 [Zea mays]		
Niben101Scf31273g00001.1			Unknown protein		
Niben101Scf00312g03007.1	sp|O49250|CYCLD_ANTMA	*-*-	Transcription factor CYCLOIDEA	IPR005333 (Transcription factor, TCP)	
Niben101Scf05044g04035.1	AT1G79910.1	*-*-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=381	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf04118g01005.1	ref|NP_001061987.1|	*-*-	product [Oryza sativa Japonica Group]	IPR006904 (Protein of unknown function DUF716 (TMEM45))	
Niben101Scf05306g00007.1	emb|CDX91355.1|	*-*-	BnaC04g07950D [Brassica napus]		
Niben101Scf01727g01002.1	gb|KEH21484.1|	***-	heparan-alpha-glucosaminide N-acetyltransferase-like protein [Medicago truncatula]	IPR012429 (Protein of unknown function DUF1624)	
Niben101Scf02319g05005.1	sp|Q6R8G0|PHO1A_ARATH	***-	Phosphate transporter PHO1 homolog 10	IPR004331 (SPX, N-terminal), IPR004342 (EXS, C-terminal)	GO:0016021 (integral component of membrane)
Niben101Scf05043g01009.1	sp|Q33406|RBL_DEPGR	--**	Ribulose bisphosphate carboxylase large chain	IPR017443 (Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf01418g03019.1	sp|Q2H4D0|SUB2_CHAGB	****	ATP-dependent RNA helicase SUB2	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf03265g00010.1	AT5G48800.1	***-	Phototropic-responsive NPH3 family protein LENGTH=614	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf01841g01017.1	sp|Q0DLA3|ADF7_ORYSJ	*-**	Actin-depolymerizing factor 7	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf04861g00015.1	sp|Q9SEI3|PS10A_ARATH	--*-	26S protease regulatory subunit 10B homolog A		
Niben101Scf07162g02009.1	AT1G74890.1	***-	response regulator 15 LENGTH=206	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf03990g01008.1	sp|P42552|S1FA_SPIOL	****	DNA-binding protein S1FA	IPR006779 (DNA binding protein S1FA)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01037g05005.1	sp|A9IIJ2|RNC_BORPD	*-**	Ribonuclease 3	IPR011907 (Ribonuclease III)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0006396 (RNA processing), GO:0016075 (rRNA catabolic process)
Niben101Scf00034g04018.1	ref|XP_002519145.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF43356.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf18985g01003.1			Unknown protein	IPR007836 (Ribosomal protein L41)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf34260g00001.1	AT4G35880.1	***-	Eukaryotic aspartyl protease family protein LENGTH=524	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02074g07073.1	sp|A5F0I2|CH601_VIBC3	--*-	60 kDa chaperonin 1		
Niben101Scf16244g02018.1	ref|XP_007010829.1|	*-*-	Nuclear matrix protein-related isoform 2 [Theobroma cacao] gb|EOY19639.1| Nuclear matrix protein-related isoform 2 [Theobroma cacao]		
Niben101Scf03494g05002.1	AT5G06839.3	****	bZIP transcription factor family protein LENGTH=460	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02047g00001.1	sp|Q9FWW5|Y1215_ARATH	*-*-	WEB family protein	IPR008545 (WEB family)	
Niben101Scf07531g02008.1	sp|Q8LG32|LOR2_ARATH	***-	Protein LURP-one-related 2	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf32851g00032.1	AT2G34640.1	***-	plastid transcriptionally active 12 LENGTH=527		
Niben101Scf01682g01010.1	AT4G22730.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=688	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf01849g05008.1	sp|Q9LVQ4|Y5586_ARATH	***-	WEB family protein	IPR008545 (WEB family)	
Niben101Scf00998g04004.1	ref|NP_001062209.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf02908g00001.1	sp|P50872|TRPE_AZOBR	*-*-	Anthranilate synthase	IPR029062 (Class I glutamine amidotransferase-like)	
Niben101Scf01721g08007.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY), IPR018872 (Zn-cluster domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04742g03014.1	AT2G26920.1	***-	Ubiquitin-associated/translation elongation factor EF1B protein LENGTH=646	IPR009060 (UBA-like), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote)	GO:0005515 (protein binding)
Niben101Scf05304g01011.1	sp|Q67IX6|PDI14_ORYSJ	****	Protein disulfide isomerase-like 1-4	IPR005792 (Protein disulphide isomerase), IPR012336 (Thioredoxin-like fold)	GO:0005783 (endoplasmic reticulum), GO:0016853 (isomerase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00612g02020.1	sp|O49816|LEA1_CICAR	-**-	Late embryogenesis abundant protein 1		
Niben101Scf07579g03004.1	gb|KEH31349.1|	***-	stress up-regulated Nod 19 protein [Medicago truncatula]	IPR011692 (Stress up-regulated Nod 19)	
Niben101Scf06896g01004.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf21557g01026.1	ref|XP_002511201.1|	****	ATP binding protein, putative [Ricinus communis] gb|EEF51803.1| ATP binding protein, putative [Ricinus communis]	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf10219g00008.1	AT1G29160.1	****	Dof-type zinc finger DNA-binding family protein LENGTH=175	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01649g02001.1			Unknown protein		
Niben101Scf01817g02003.1	sp|Q54U44|ABCCC_DICDI	***-	ABC transporter C family member 12	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf18172g01008.1	ref|XP_002528523.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF33835.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf13331g00001.1	AT2G44380.1	*-*-	Cysteine/Histidine-rich C1 domain family protein LENGTH=247		
Niben101Scf02537g00001.1	sp|P93835|DRE1B_ARATH	-**-	Dehydration-responsive element-binding protein 1B		
Niben101Scf08590g03016.1	AT4G24060.1	****	Dof-type zinc finger DNA-binding family protein LENGTH=342	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00996g04024.1	emb|CCA16609.1|	*-*-	conserved hypothetical protein [Albugo laibachii Nc14]	IPR003035 (RWP-RK domain)	
Niben101Scf00077g02004.1	AT1G14890.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=219	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf04216g04012.1	sp|Q3A8C3|DNAJ_PELCD	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf25367g00005.1	gb|KEH21061.1|	*-*-	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf01285g03011.1	sp|Q9LE73|NUDT4_ARATH	*-**	Nudix hydrolase 4	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf07054g04011.1	sp|Q9LFA5|MED28_ARATH	***-	Mediator of RNA polymerase II transcription subunit 28		
Niben101Scf00712g15006.1	sp|P29829|GBB2_DROME	--**	Guanine nucleotide-binding protein subunit beta-2	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03747g04010.1	sp|A1SNK7|RL24_NOCSJ	--**	50S ribosomal protein L24	IPR005756 (Ribosomal protein L26/L24P, eukaryotic/archaeal), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf05841g01036.1	sp|Q9LHA4|VA0D2_ARATH	****	V-type proton ATPase subunit d2	IPR002843 (ATPase, V0 complex,  c/d subunit)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf08635g03006.1	sp|P38389|SC61B_ARATH	*-*-	Protein transport protein Sec61 subunit beta	IPR016482 (Protein transport protein SecG/Sec61-beta/Sbh1)	
Niben101Scf01174g00008.1	sp|Q9LZ60|SMR3_ARATH	--*-	Cyclin-dependent protein kinase inhibitor SMR3		
Niben101Scf10767g03011.1	sp|Q9T048|DRL27_ARATH	***-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf02573g00010.1			Unknown protein		
Niben101Scf04060g02009.1	gb|KEH34683.1|	***-	cold-regulated protein, putative [Medicago truncatula]		
Niben101Scf01065g00003.1	sp|Q8BKC5|IPO5_MOUSE	--*-	Importin-5	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf15618g00001.1	sp|P08743|COX1_OENBE	--*-	Cytochrome c oxidase subunit 1		
Niben101Scf02111g16009.1	AT3G06630.1	****	protein kinase family protein LENGTH=671	IPR000014 (PAS domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004871 (signal transducer activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00788g02015.1	AT2G43840.2	***-	UDP-glycosyltransferase 74 F1 LENGTH=449	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01852g01020.1	ref|XP_007041935.1|	***-	Urb2/Npa2, putative isoform 2 [Theobroma cacao] gb|EOX97766.1| Urb2/Npa2, putative isoform 2 [Theobroma cacao]	IPR018849 (Nucleolar 27S pre-rRNA processing, Urb2/Npa2, C-terminal)	
Niben101Scf00479g03017.1			Unknown protein		
Niben101Scf02500g01016.1	sp|Q9Z1K8|YLAT1_MOUSE	--**	Y+L amino acid transporter 1	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf05676g05004.1			Unknown protein		
Niben101Scf01817g00001.1	ref|XP_007040444.1|	***-	Ubiquitin ligase protein cop1, putative isoform 5 [Theobroma cacao] gb|EOY24945.1| Ubiquitin ligase protein cop1, putative isoform 5 [Theobroma cacao]	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01017g03006.1	AT1G05675.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=453	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04556g02003.1	sp|B3DY14|FTSH2_METI4	*-**	ATP-dependent zinc metalloprotease FtsH 2	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00217g00006.1	sp|Q7XJ81|SCRK2_SOLHA	***-	Fructokinase-2	IPR002139 (Ribokinase), IPR029056 (Ribokinase-like)	GO:0004747 (ribokinase activity), GO:0006014 (D-ribose metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf18129g00002.1			Unknown protein		
Niben101Scf08670g00020.1	sp|O81078|GLR29_ARATH	****	Glutamate receptor 2.9	IPR001320 (Ionotropic glutamate receptor), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf08652g00006.1	sp|Q54H38|ABHD_DICDI	*-*-	Abhydrolase domain-containing protein	IPR012020 (AB-hydrolase YheT, putative), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02639g04002.1	sp|Q54TV1|ABCG6_DICDI	*-*-	ABC transporter G family member 6	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf06344g06014.1	ref|XP_007042459.1|	***-	PIF / Ping-Pong family of plant transposases [Theobroma cacao] gb|EOX98290.1| PIF / Ping-Pong family of plant transposases [Theobroma cacao]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf02023g01005.1	AT1G78020.1	***-	Protein of unknown function (DUF581) LENGTH=162	IPR007650 (Zf-FLZ domain)	
Niben101Scf01382g03004.1	AT4G30710.1	*-*-	Family of unknown function (DUF566) LENGTH=644	IPR007573 (Protein of unknown function DUF566)	
Niben101Scf00592g14006.1	sp|C5D6U5|MENE_GEOSW	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04675g08014.1	sp|P49043|VPE_CITSI	***-	Vacuolar-processing enzyme	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05619g00004.1	ref|XP_002527500.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF34898.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01124g07006.1	sp|Q2MY40|PAT11_SOLTU	***-	Patatin-11	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0008152 (metabolic process)
Niben101Scf02608g03004.1	AT3G50840.1	***-	Phototropic-responsive NPH3 family protein LENGTH=569	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf03348g00010.1	gb|AIE43833.1|	*-*-	WRKY transcription factor 7 [Gossypium hirsutum]		
Niben101Scf30867g00005.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021720 (Malectin)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06436g01003.1	ref|XP_002872926.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH49185.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf08112g01019.1	sp|Q9SKK8|ATL22_ARATH	--*-	RING-H2 finger protein ATL22		
Niben101Scf01033g02011.1	sp|Q9ZU94|CRR12_ARATH	***-	Cysteine-rich repeat secretory protein 12	IPR002902 (Gnk2-homologous domain)	
Niben101Scf07184g03005.1	sp|Q145F0|DNAJ_BURXL	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf11366g00007.1	sp|Q8VID1|DHRS4_RAT	--**	Dehydrogenase/reductase SDR family member 4	IPR002198 (Short-chain dehydrogenase/reductase SDR)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf13150g04017.1	gb|KFB82446.1|	*-*-	methyltransferase type 11 [Calothrix sp. 336/3]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf07798g02004.1	AT1G72410.2	*-*-	COP1-interacting protein-related LENGTH=1270		
Niben101Scf03222g01013.1	emb|CDX81418.1|	***-	BnaC09g08290D [Brassica napus]		
Niben101Scf32851g00036.1	sp|P46300|RS4_SOLTU	***-	40S ribosomal protein S4	IPR000876 (Ribosomal protein S4e)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04185g03014.1	sp|Q54EY2|EI2BB_DICDI	*-*-	Translation initiation factor eIF-2B subunit beta	IPR000649 (Initiation factor 2B-related), IPR027363 (Methylthioribose-1-phosphate isomerase-like, N-terminal domain)	GO:0044237 (cellular metabolic process)
Niben101Scf10436g01012.1	sp|P22180|PMA1_SOLLC	****	Plasma membrane ATPase 1	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf05567g00002.1	sp|Q9M0Y8|NSF_ARATH	*-*-	Vesicle-fusing ATPase	IPR009010 (Aspartate decarboxylase-like domain), IPR029067 (CDC48 domain 2-like)	
Niben101Scf06392g01010.1	sp|B4FUS3|CNR8_MAIZE	***-	Cell number regulator 8	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf10015g10004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01413g04009.1	AT4G21620.1	*-*-	glycine-rich protein LENGTH=131		
Niben101Scf00175g01002.1	AT3G21790.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=495	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06467g02009.1	sp|B6YR61|NUOH_AZOPC	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf09803g00013.1	sp|O94915|FRYL_HUMAN	***-	Protein furry homolog-like	IPR016024 (Armadillo-type fold), IPR025614 (Cell morphogenesis protein N-terminal), IPR029473 (Cell morphogenesis central region)	GO:0005488 (binding)
Niben101Scf03403g03032.1	sp|Q39065|COPT1_ARATH	****	Copper transporter 1	IPR007274 (Ctr copper transporter)	GO:0005375 (copper ion transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0035434 (copper ion transmembrane transport)
Niben101Scf09262g01016.1	AT2G04540.1	***-	Beta-ketoacyl synthase LENGTH=461	IPR017568 (3-oxoacyl-[acyl-carrier-protein] synthase 2), IPR020841 (Polyketide synthase, beta-ketoacyl synthase domain)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00646g04018.1	gb|KEH39256.1|	***-	F-box/FBD/LRR protein [Medicago truncatula]		
Niben101Scf04158g01007.1	gb|AEW48193.1|	*-*-	disease resistance protein RGH4 [Solanum chacoense]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01172g03008.1	sp|Q9SRM9|ALMT8_ARATH	*-**	Aluminum-activated malate transporter 8	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf04171g01014.1	sp|Q9FLS0|FB253_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01968g01007.1	ref|XP_002511849.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF50518.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08111g02010.1	sp|Q9ZU91|E133_ARATH	***-	Glucan endo-1,3-beta-glucosidase 3	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05584g02017.1			Unknown protein		
Niben101Scf00369g18021.1	AT5G52390.1	***-	PAR1 protein LENGTH=195	IPR009489 (PAR1)	
Niben101Scf03804g03007.1	sp|P0CT30|SGT2_USTMA	*-*-	Small glutamine-rich tetratricopeptide repeat-containing protein 2	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01779g05003.1	AT1G65950.1	*-*-	Protein kinase superfamily protein LENGTH=551	IPR009330 (Lipopolysaccharide core heptose(II) kinase), IPR011009 (Protein kinase-like domain)	GO:0009244 (lipopolysaccharide core region biosynthetic process), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05821g01001.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf04700g08003.1	AT4G31590.1	***-	Cellulose-synthase-like C5 LENGTH=692	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Ctg13361g00001.1	emb|CDY14308.1|	*-*-	BnaA08g14390D [Brassica napus]		
Niben101Scf01599g03001.1	AT1G21150.1	****	Mitochondrial transcription termination factor family protein LENGTH=390	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05201g10003.1	sp|Q8N4F7|RN175_HUMAN	--*-	RING finger protein 175	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06387g00008.1	sp|P40267|H1_SOLPN	*-*-	Histone H1	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR020478 (AT hook-like)	GO:0000785 (chromatin), GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02461g06018.1	sp|Q8NBP0|TTC13_HUMAN	--*-	Tetratricopeptide repeat protein 13	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05051g03020.1	sp|C3MZB8|RL11_SULIA	***-	50S ribosomal protein L11	IPR000911 (Ribosomal protein L11/L12)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05800g01005.1	AT4G31930.1	****	Mitochondrial glycoprotein family protein LENGTH=234	IPR003428 (Mitochondrial glycoprotein)	GO:0005759 (mitochondrial matrix)
Niben101Scf23814g00032.1	sp|Q9XHM1|EIF3C_MEDTR	****	Eukaryotic translation initiation factor 3 subunit C	IPR000717 (Proteasome component (PCI) domain), IPR008905 (Eukaryotic translation initiation factor 3 subunit C, N-terminal domain), IPR027516 (Eukaryotic translation initiation factor 3 subunit C)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005852 (eukaryotic translation initiation factor 3 complex), GO:0006413 (translational initiation), GO:0031369 (translation initiation factor binding)
Niben101Scf01990g00001.1	sp|P56331|IF1A_ONOVI	****	Eukaryotic translation initiation factor 1A	IPR001253 (Translation initiation factor 1A (eIF-1A))	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf02974g01005.1	sp|O35130|NEP1_MOUSE	****	Ribosomal RNA small subunit methyltransferase NEP1	IPR005304 (Ribosomal biogenesis, methyltransferase, EMG1/NEP1), IPR029028 (Alpha/beta knot methyltransferases)	GO:0008168 (methyltransferase activity)
Niben101Scf05094g00013.1	AT5G05960.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=116	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf03166g00001.1	sp|P05100|3MG1_ECOLI	*-**	DNA-3-methyladenine glycosylase 1	IPR005019 (Methyladenine glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0008725 (DNA-3-methyladenine glycosylase activity)
Niben101Scf08097g02001.1			Unknown protein		
Niben101Scf02336g01003.1	emb|CDY43328.1|	***-	BnaC03g59000D [Brassica napus]	IPR007789 (Protein of unknown function DUF688)	
Niben101Scf02831g03022.1	ref|NP_001175777.1|	--*-	[Oryza sativa Japonica Group] dbj|BAH94505.1| [Oryza sativa Japonica Group]	IPR013880 (Yos1-like)	
Niben101Scf14877g01012.1	sp|Q5N9X2|LAC4_ORYSJ	***-	Laccase-4	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf11860g00007.1	sp|O80872|TBL45_ARATH	***-	Protein trichome birefringence-like 45	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf04114g01054.1	gb|AIF76113.1|	****	cytochrome c biogenesis B, partial (mitochondrion) [Halodule pinifolia]	IPR003544 (Cytochrome c-type biogenesis protein CcmB)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf01334g01004.1	sp|Q03MR4|TRUA_STRTD	*-**	tRNA pseudouridine synthase A	IPR001406 (Pseudouridine synthase I, TruA), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf07608g02015.1	sp|Q24849|MCM3_ENTHI	*-**	DNA replication licensing factor MCM3	IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR005637 (TAP C-terminal (TAP-C) domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0051028 (mRNA transport)
Niben101Scf10476g02018.1	sp|Q13636|RAB31_HUMAN	***-	Ras-related protein Rab-31	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf06720g01024.1	gb|ABR46003.1|	***-	enhanced disease susceptibility 1 [Arabidopsis thaliana]	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf04416g00012.1	AT1G07840.2	***-	Sas10/Utp3/C1D family LENGTH=312		
Niben101Scf08026g02003.1	sp|B1NWE6|PSBC_MANES	*-**	Photosystem II CP43 reaction center protein	IPR000932 (Photosystem antenna protein-like), IPR003687 (Photosystem II PsbK)	GO:0009521 (photosystem), GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf14809g00004.1			Unknown protein		
Niben101Scf05300g00004.1			Unknown protein		
Niben101Scf04741g02014.1	sp|O93866|HSP70_TRIRU	*-*-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family)	
Niben101Scf02420g03014.1	sp|Q9FWX2|NAC7_ARATH	***-	NAC domain-containing protein 7	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03779g04013.1	sp|Q02158|PLC_DICDI	*-**	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase	IPR001192 (Phosphoinositide phospholipase C family)	GO:0004435 (phosphatidylinositol phospholipase C activity), GO:0005515 (protein binding), GO:0006629 (lipid metabolic process), GO:0007165 (signal transduction), GO:0008081 (phosphoric diester hydrolase activity), GO:0035556 (intracellular signal transduction)
Niben101Scf06280g05017.1	sp|Q564K3|CND2_ARATH	****	Condensin complex subunit 2	IPR022816 (Condensin complex subunit 2/barren)	GO:0000796 (condensin complex), GO:0007076 (mitotic chromosome condensation)
Niben101Scf02655g01005.1	sp|Q39950|NLTP_HELAN	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf01094g00005.1			Unknown protein		
Niben101Scf03350g08003.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03141g10005.1			Unknown protein		
Niben101Scf03607g03003.1	sp|Q5R8K4|ZN207_PONAB	*-*-	Zinc finger protein 207	IPR003656 (Zinc finger, BED-type), IPR015880 (Zinc finger, C2H2-like)	GO:0003677 (DNA binding), GO:0046872 (metal ion binding)
Niben101Scf02621g04024.1	AT2G16770.1	****	Basic-leucine zipper (bZIP) transcription factor family protein LENGTH=249	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02606g00015.1	sp|Q58DS5|RAB13_BOVIN	***-	Ras-related protein Rab-13	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf19957g00003.1			Unknown protein		
Niben101Scf02111g16051.1	AT3G06630.1	***-	protein kinase family protein LENGTH=671	IPR000014 (PAS domain)	GO:0004871 (signal transducer activity), GO:0007165 (signal transduction)
Niben101Scf00544g00002.1	ref|NP_063977.1|	***-	orf146 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] ref|YP_004222306.1| hypothetical protein BevumaM_p071 [Beta vulgaris subsp. maritima] dbj|BAA99289.1| orf146 [Beta vulgaris subsp. vulgaris] emb|CBJ14042.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBJ17533.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBL54124.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp. maritima]		
Niben101Scf04563g03008.1	sp|Q4LDF9|OEP37_PEA	*-*-	Outer envelope pore protein 37, chloroplastic		
Niben101Scf08669g00007.1	AT4G33200.1	*-**	myosin, putative LENGTH=1522	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf01513g01010.1	sp|P70718|6PGD_AGGAC	*-**	6-phosphogluconate dehydrogenase, decarboxylating	IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR015815 (Hydroxy monocarboxylic acid anion dehydrogenase, HIBADH-type), IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04549g09016.1	sp|Q18GX3|PSB_HALWD	****	Proteasome subunit beta	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf00466g02019.1	ref|XP_002524703.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF37722.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05188g00008.1	sp|Q56K13|SF3B5_BOVIN	***-	Splicing factor 3B subunit 5	IPR009846 (Splicing factor 3B subunit 5/RDS3 complex subunit 10)	
Niben101Scf00589g00007.1	AT1G70320.1	*-*-	ubiquitin-protein ligase 2 LENGTH=3658	IPR010309 (E3 ubiquitin ligase, domain of unknown function DUF908), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01518g08004.1	sp|Q9C5I3|ERF76_ARATH	*-**	Ethylene-responsive transcription factor 11	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00177g09010.1	AT5G09995.2	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=257		
Niben101Scf11037g01012.1	sp|Q6NMR8|FAF3_ARATH	*-*-	Protein FANTASTIC FOUR 3	IPR021410 (The fantastic four family)	
Niben101Scf01089g00007.1	sp|Q05967|PGLR_TOBAC	*-**	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05030g03006.1	sp|P83947|PME1_FICPW	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02814g01006.1	gb|KEH24112.1|	***-	NLI interacting factor-like phosphatase [Medicago truncatula]	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding)
Niben101Scf01626g02023.1	sp|Q9SRV3|LBD20_ARATH	*-*-	LOB domain-containing protein 20	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf01453g00005.1	emb|CDY31483.1|	--*-	BnaC05g15920D [Brassica napus]		
Niben101Scf13179g00005.1	emb|CDX81068.1|	*-*-	BnaC03g03220D [Brassica napus]		
Niben101Scf11960g02012.1	sp|B5WWZ8|FAO1_LOTJA	****	Long-chain-alcohol oxidase FAO1	IPR012400 (Alcohol dehydrogenase, long-chain fatty)	GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0046577 (long-chain-alcohol oxidase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02994g01012.1	AT5G40940.1	***-	putative fasciclin-like arabinogalactan protein 20 LENGTH=424	IPR000782 (FAS1 domain)	
Niben101Scf11609g01003.1	gb|AES71883.2|	--*-	Lipid transfer protein [Medicago truncatula]	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00996g04023.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06408g02001.1	sp|O80450|TGT3B_ARATH	*-**	Trihelix transcription factor GT-3b	IPR017877 (Myb-like domain), IPR027775 (C2H2- zinc finger protein family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06848g08014.1			Unknown protein		
Niben101Scf04113g17015.1	ref|XP_002302027.2|	*-*-	isoflavone reductase family protein [Populus trichocarpa] gb|EEE81300.2| isoflavone reductase family protein [Populus trichocarpa]		
Niben101Scf04995g14006.1	sp|Q1PFN9|PUM9_ARATH	*-*-	Pumilio homolog 9	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf04895g00017.1	sp|G5EGA6|DHRS4_CAEEL	****	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02172g06030.1	AT1G72180.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=977	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Scf02074g04007.1	ref|XP_002536610.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF25773.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03455g05006.1			Unknown protein		
Niben101Scf00348g10005.1	AT5G01210.1	****	HXXXD-type acyl-transferase family protein LENGTH=475	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00051g05017.1	sp|Q9Y5Q8|TF3C5_HUMAN	*-*-	General transcription factor 3C polypeptide 5	IPR019136 (Transcription factor IIIC, subunit 5)	
Niben101Scf00199g01006.1	gb|ADK13073.1|	***-	conserved hypothetical protein 16 [Hevea brasiliensis]	IPR008511 (Protein BYPASS-related)	
Niben101Ctg08235g00001.1	AT3G03110.1	*-*-	exportin 1B LENGTH=1076	IPR013598 (Exportin-1/Importin-beta-like)	
Niben101Scf01178g01002.1	AT2G27950.1	*-*-	Ring/U-Box superfamily protein LENGTH=839	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03404g00006.1	AT1G61670.1	***-	Lung seven transmembrane receptor family protein LENGTH=513	IPR009637 (Transmembrane receptor, eukaryota)	GO:0016021 (integral component of membrane)
Niben101Scf06560g02016.1	sp|Q8BGI1|RNF24_MOUSE	--*-	RING finger protein 24	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01329g01014.1	sp|Q9M024|TAAC_ARATH	--*-	Thylakoid ADP,ATP carrier protein, chloroplastic		
Niben101Scf02509g11007.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02010g01013.1	sp|Q9M5L0|RL35_EUPES	*-*-	60S ribosomal protein L35	IPR001854 (Ribosomal protein L29)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06263g01002.1	AT4G35260.1	****	isocitrate dehydrogenase 1 LENGTH=367	IPR001804 (Isocitrate and isopropylmalate dehydrogenases family), IPR024084 (Isopropylmalate dehydrogenase-like domain)	GO:0000287 (magnesium ion binding), GO:0004449 (isocitrate dehydrogenase (NAD+) activity), GO:0006099 (tricarboxylic acid cycle), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00854g05041.1			Unknown protein		
Niben101Scf00536g05012.1	AT3G24190.1	***-	Protein kinase superfamily protein LENGTH=793	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00851g06035.1	sp|Q0WPZ6|PP158_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05824g09020.1	sp|Q9SWB8|CAMT2_EUCGL	****	Caffeoyl-CoA O-methyltransferase 2	IPR002935 (O-methyltransferase, family 3), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008171 (O-methyltransferase activity)
Niben101Scf03284g02001.1	AT5G20810.2	***-	SAUR-like auxin-responsive protein family LENGTH=190	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf09442g00009.1	AT3G51420.1	****	strictosidine synthase-like 4 LENGTH=370	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf01240g11002.1	AT1G68670.1	***-	myb-like transcription factor family protein LENGTH=354	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08157g00012.1	sp|O65420|VAL3_ARATH	*-*-	B3 domain-containing transcription factor VAL3		
Niben101Scf00110g00008.1	emb|CDY61779.1|	*-*-	BnaC03g72580D [Brassica napus]	IPR015300 (DNA-binding pseudobarrel domain)	
Niben101Scf00135g01008.1	sp|Q9LVQ5|PP432_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02253g01014.1	sp|O26680|DHQS_METTH	****	3-dehydroquinate synthase	IPR002812 (3-dehydroquinate synthase)	GO:0003856 (3-dehydroquinate synthase activity), GO:0009073 (aromatic amino acid family biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07442g01009.1	sp|Q9C5I3|ERF76_ARATH	*-**	Ethylene-responsive transcription factor 11	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02074g06015.1	ref|XP_002536345.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26037.1| conserved hypothetical protein [Ricinus communis]		
Niben101Ctg01664g00003.1			Unknown protein		
Niben101Scf01221g02002.1	sp|B2V844|LEUC_SULSY	***-	3-isopropylmalate dehydratase large subunit	IPR006251 (Homoaconitase/3-isopropylmalate dehydratase, large subunit), IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process), GO:0008652 (cellular amino acid biosynthetic process), GO:0016836 (hydro-lyase activity), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf00797g18009.1	sp|Q56YA5|SGAT_ARATH	***-	Serine--glyoxylate aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase), IPR024169 (Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03679g03018.1	gb|AES72700.2|	*-*-	COP1-interacting-like protein, putative [Medicago truncatula]		
Niben101Scf01054g03001.1	ref|XP_007023201.1|	***-	Post-illumination chlorophyll fluorescence increase isoform 1 [Theobroma cacao] gb|EOY25823.1| Post-illumination chlorophyll fluorescence increase isoform 1 [Theobroma cacao]		
Niben101Scf26203g00003.1	sp|C7G304|GOLS2_SOLLC	***-	Galactinol synthase 2	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf07048g00001.1			Unknown protein		
Niben101Scf00171g00003.1	ref|NP_563854.1|	-**-	DNA polymerase delta subunit 4 [Arabidopsis thaliana] gb|ABF59014.1| [Arabidopsis thaliana] gb|AEE28498.1| DNA polymerase delta subunit 4 [Arabidopsis thaliana]		
Niben101Scf10579g01026.1	gb|ACU28623.1|	*-*-	At4g14180-like protein [Arabidopsis lyrata subsp. petraea]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02398g01001.1	sp|Q2EMV9|PAR14_MOUSE	*-*-	Poly [ADP-ribose] polymerase 14	IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR022003 (RST domain of plant C-terminal)	GO:0003950 (NAD+ ADP-ribosyltransferase activity)
Niben101Scf03185g01008.1	AT1G18160.1	*-**	Protein kinase superfamily protein LENGTH=992	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01506g02015.1			Unknown protein		
Niben101Scf01551g00015.1			Unknown protein		
Niben101Scf01789g00013.1	sp|Q9FZ70|FDL1_ARATH	*-*-	F-box/FBD/LRR-repeat protein		
Niben101Scf02717g00002.1	AT5G42570.1	*-**	B-cell receptor-associated 31-like LENGTH=218	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf08060g00005.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03643g05002.1	ref|XP_007048621.1|	*-*-	CAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 3 [Theobroma cacao] gb|EOX92778.1| CAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 3 [Theobroma cacao]		
Niben101Scf02408g03013.1	ref|XP_007033869.1|	*-*-	RNA-binding ASCH domain protein, putative isoform 2 [Theobroma cacao] gb|EOY04795.1| RNA-binding ASCH domain protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf00176g05001.1	gb|KEH31185.1|	***-	transmembrane protein, putative [Medicago truncatula]	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf01421g00014.1	sp|Q5U575|KLH21_XENLA	*-*-	Kelch-like protein 21	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf05407g00001.1	sp|Q41238|LOX16_SOLTU	***-	Linoleate 9S-lipoxygenase 6	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05506g08002.1	dbj|BAO50886.1|	*-*-	cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]		
Niben101Scf06613g05020.1	sp|Q338B9|GCN5_ORYSJ	*-**	Histone acetyltransferase GCN5	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf00338g00010.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf32429g00003.1			Unknown protein		
Niben101Scf07798g01004.1	sp|Q8L7S3|C3H24_ARATH	--*-	Zinc finger CCCH domain-containing protein 24		
Niben101Scf02864g00004.1	gb|AAG24616.1|AF298594_1	--*-	arabinogalactan protein [Nicotiana alata]		
Niben101Scf09595g03003.1	sp|Q84QY3|PLP1_ORYSJ	*-*-	Patatin-like protein 1	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf02210g11007.1			Unknown protein		
Niben101Scf05675g01017.1	AT4G00340.1	*-*-	receptor-like protein kinase 4 LENGTH=818		
Niben101Scf00539g05015.1	AT1G76050.2	****	Pseudouridine synthase family protein LENGTH=430	IPR002942 (RNA-binding S4 domain), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf02911g02012.1	ref|XP_002533735.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF28647.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf11299g00001.1	sp|Q607R4|MIAA_METCA	*-**	tRNA dimethylallyltransferase	IPR002627 (tRNA isopentenyltransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf02921g00003.1	sp|Q8K4D8|AL1A3_RAT	****	Aldehyde dehydrogenase family 1 member A3	IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf04436g10004.1	sp|Q6X4A2|CIPKV_ORYSJ	****	CBL-interacting protein kinase 31	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11480g03022.1	sp|Q9LSL9|PP445_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02181g00006.1	gb|AHX81351.1|	*-*-	cytochrome c biogenesis FN (mitochondrion) [Licania heteromorpha]		
Niben101Scf04072g01001.1	sp|O65238|Y5537_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like)	
Niben101Scf03224g10011.1	AT5G32440.3	***-	Ubiquitin system component Cue protein LENGTH=265	IPR009060 (UBA-like)	GO:0005515 (protein binding)
Niben101Scf01006g05010.1	AT2G21860.1	***-	violaxanthin de-epoxidase-related LENGTH=522		
Niben101Scf02929g04081.1	emb|CAR89126.1|	*-*-	Conserved protein [Lactobacillus rhamn [Lactobacillus rhamnosus Lc 705]		
Niben101Scf14881g02010.1	sp|Q9C5D2|FBL4_ARATH	***-	F-box/LRR-repeat protein 4	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf05112g00012.1	ref|XP_007038909.1|	***-	LIM domain-containing protein A, putative isoform 2 [Theobroma cacao] gb|EOY23410.1| LIM domain-containing protein A, putative isoform 2 [Theobroma cacao]		
Niben101Scf01106g01005.1	gb|AIS35924.1|	--*-	MYB transcription factor 7 [Phalaenopsis equestris]		
Niben101Scf01385g00004.1	gb|AES94740.2|	***-	transcription factor [Medicago truncatula]	IPR006869 (Domain of unknown function DUF547), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	
Niben101Scf01826g07013.1	sp|P44318|EX3_HAEIN	***-	Exodeoxyribonuclease III	IPR004808 (AP endonuclease 1), IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0004518 (nuclease activity), GO:0006281 (DNA repair)
Niben101Scf04526g00009.1	ref|YP_009091714.1|	***-	orf105 (mitochondrion) [Panax ginseng] gb|AHJ81036.1| orf105 (mitochondrion) [Panax ginseng]		
Niben101Scf00085g03004.1	sp|Q0WL80|UGGG_ARATH	*-**	UDP-glucose:glycoprotein glucosyltransferase	IPR009448 (UDP-glucose:Glycoprotein Glucosyltransferase)	GO:0003980 (UDP-glucose:glycoprotein glucosyltransferase activity), GO:0006486 (protein glycosylation)
Niben101Scf02693g01007.1	AT1G02610.1	***-	RING/FYVE/PHD zinc finger superfamily protein LENGTH=221	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022143 (Protein of unknown function DUF3675)	
Niben101Scf09596g00013.1	sp|Q8XIT1|DNAJ_CLOPE	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf00922g01002.1			Unknown protein		
Niben101Scf06825g02002.1	ref|XP_007037138.1|	***-	Ankyrin repeat domain-containing protein 50 isoform 3 [Theobroma cacao] gb|EOY21639.1| Ankyrin repeat domain-containing protein 50 isoform 3 [Theobroma cacao]		
Niben101Scf08151g00001.1	ref|XP_007013137.1|	***-	ABI-1-like 1, putative isoform 3 [Theobroma cacao] gb|EOY30756.1| ABI-1-like 1, putative isoform 3 [Theobroma cacao]		
Niben101Scf02381g03002.1	gb|AIU49313.1|	*-*-	AT2G18410-like protein, partial [Solanum tuberosum]		
Niben101Scf08196g00008.1	AT3G17840.1	*-**	receptor-like kinase 902 LENGTH=647	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07281g00002.1	AT4G15840.1	*-*-	BTB/POZ domain-containing protein LENGTH=836		
Niben101Scf11647g00002.1	ref|XP_002516585.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF45926.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11940g00003.1	AT1G79020.1	*-*-	Enhancer of polycomb-like transcription factor protein LENGTH=453		
Niben101Scf01215g02003.1			Unknown protein		
Niben101Scf03969g00011.1	sp|Q9SH26|PP102_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05018g04003.1			Unknown protein		
Niben101Scf05349g01011.1	sp|P04782|CB24_PETSP	*-*-	Chlorophyll a-b binding protein 25, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf03263g06004.1	AT1G04150.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1012	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf04001g01003.1	AT3G57630.1	***-	exostosin family protein LENGTH=793	IPR000742 (Epidermal growth factor-like domain), IPR004263 (Exostosin-like)	GO:0005515 (protein binding)
Niben101Scf11232g01002.1	AT5G14700.1	****	NAD(P)-binding Rossmann-fold superfamily protein LENGTH=368	IPR016040 (NAD(P)-binding domain)	GO:0003854 (3-beta-hydroxy-delta5-steroid dehydrogenase activity), GO:0006694 (steroid biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf01384g03028.1			Unknown protein		
Niben101Scf02322g00002.1			Unknown protein		
Niben101Scf05862g00005.1	sp|Q9LSQ6|PBP1_ARATH	****	Calcium-binding protein PBP1	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01984g00024.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR002902 (Gnk2-homologous domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01392g00012.1	sp|Q9XI00|SKI32_ARATH	--*-	F-box protein 7	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01225g04031.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04283g04005.1	sp|Q9M0X5|CRK25_ARATH	--*-	Cysteine-rich receptor-like protein kinase 25	IPR002902 (Gnk2-homologous domain)	
Niben101Scf03446g09001.1			Unknown protein		
Niben101Scf03804g00006.1	sp|Q04189|TAP1_ANTMA	-**-	Protein TAP1		
Niben101Scf02151g03002.1	emb|CDX79607.1|	***-	BnaC03g19430D [Brassica napus]		
Niben101Scf00148g01008.1	sp|Q6NVQ1|JAGN1_XENTR	*-*-	Protein jagunal homolog 1	IPR009787 (Protein jagunal)	GO:0005789 (endoplasmic reticulum membrane), GO:0007029 (endoplasmic reticulum organization)
Niben101Scf00077g01008.1	sp|Q2QQS5|CCT14_ORYSJ	****	Cyclin-T1-4	IPR015429 (Cyclin C/H/T/L)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0019901 (protein kinase binding)
Niben101Scf02074g00060.1	sp|P00411|COX2_NEUCR	*-**	Cytochrome c oxidase subunit 2	IPR000114 (Ribosomal protein L16), IPR008972 (Cupredoxin), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0005840 (ribosome), GO:0006412 (translation), GO:0016020 (membrane), GO:0019843 (rRNA binding)
Niben101Scf01400g00002.1	sp|Q8K9H6|DEAD_BUCAP	****	ATP-dependent RNA helicase DeaD	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf04700g06002.1			Unknown protein		
Niben101Scf01903g02006.1	sp|Q01664|TFAP4_HUMAN	--*-	Transcription factor AP-4	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04327g01003.1	ref|XP_007041937.1|	*-*-	Urb2/Npa2, putative isoform 4 [Theobroma cacao] gb|EOX97768.1| Urb2/Npa2, putative isoform 4 [Theobroma cacao]		
Niben101Scf02819g06001.1	sp|A2XDK8|U496A_ORYSI	***-	UPF0496 protein 1	IPR007749 (Protein of unknown function DUF677)	
Niben101Scf04514g02018.1	sp|D1I234|DRE2_VITVI	***-	Anamorsin homolog	IPR007785 (Anamorsin)	GO:0005737 (cytoplasm), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf00472g05009.1	AT1G22020.1	****	serine hydroxymethyltransferase 6 LENGTH=599	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf21140g00007.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04366g00005.1	sp|O64823|MCU2_ARATH	***-	Calcium uniporter protein 2, mitochondrial	IPR006769 (Coiled-coil domain containing protein 109, C-terminal)	
Niben101Scf00742g01036.1	sp|P42746|UBC3_ARATH	--*-	Ubiquitin-conjugating enzyme E2 3	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf03579g02007.1	AT5G13450.1	*-**	delta subunit of Mt ATP synthase LENGTH=238	IPR000711 (ATPase, OSCP/delta subunit), IPR026015 (F1F0 ATP synthase OSCP/delta subunit, N-terminal domain)	GO:0015986 (ATP synthesis coupled proton transport), GO:0016020 (membrane), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Scf01460g02001.1	AT4G38970.1	****	fructose-bisphosphate aldolase 2 LENGTH=398	IPR000741 (Fructose-bisphosphate aldolase, class-I), IPR013785 (Aldolase-type TIM barrel), IPR029768 (Fructose-bisphosphate aldolase class-I active site)	GO:0003824 (catalytic activity), GO:0004332 (fructose-bisphosphate aldolase activity), GO:0006096 (glycolytic process)
Niben101Scf05030g01001.1	sp|A6LD69|KAD_PARD8	****	Adenylate kinase	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004127 (cytidylate kinase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0006207 ('de novo' pyrimidine nucleobase biosynthetic process), GO:0006221 (pyrimidine nucleotide biosynthetic process), GO:0009041 (uridylate kinase activity), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf01789g02042.1	sp|A6ZXY5|FAL1_YEAS7	*-*-	ATP-dependent RNA helicase FAL1	IPR001650 (Helicase, C-terminal), IPR005034 (Dicer dimerisation domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0016891 (endoribonuclease activity, producing 5'-phosphomonoesters)
Niben101Scf02045g04015.1			Unknown protein		
Niben101Ctg07683g00002.1	sp|Q84UU9|TPS06_ARATH	*-**	Terpenoid synthase 6	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf02151g04029.1	sp|P73248|DHPS_SYNY3	****	Dihydropteroate synthase	IPR000550 (7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK), IPR011005 (Dihydropteroate synthase-like)	GO:0003848 (2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity), GO:0004156 (dihydropteroate synthase activity), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0042558 (pteridine-containing compound metabolic process), GO:0044237 (cellular metabolic process)
Niben101Scf01526g08017.1	AT2G37740.1	*-*-	zinc-finger protein 10 LENGTH=304	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf01191g01016.1	sp|O15488|GLYG2_HUMAN	*-*-	Glycogenin-2	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf00354g01012.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01998g01003.1	emb|CDX70437.1|	***-	BnaC03g05210D [Brassica napus]	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf02693g01008.1	sp|B8CX98|MUTS_HALOH	*-**	DNA mismatch repair protein MutS	IPR002999 (Tudor domain), IPR007695 (DNA mismatch repair protein MutS-like, N-terminal), IPR015536 (DNA mismatch repair protein MutS-homologue MSH6), IPR017261 (DNA mismatch repair protein Msh6), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf02467g01028.1	sp|Q9LH85|RLA23_ARATH	*-*-	60S acidic ribosomal protein P2-3	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf08604g00012.1	AT5G02230.1	****	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=280	IPR006439 (HAD hydrolase, subfamily IA), IPR010237 (Pyrimidine 5-nucleotidase), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf02446g00026.1	sp|C7G304|GOLS2_SOLLC	***-	Galactinol synthase 2	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf01082g07003.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09623g00015.1			Unknown protein		
Niben101Scf08679g04008.1	sp|Q9XZE5|PP2AA_DICDI	***-	Serine/threonine-protein phosphatase 2A catalytic subunit A	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf01319g03007.1			Unknown protein		
Niben101Scf02358g03022.1	sp|Q9LZX8|BIG2_ARATH	*-**	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	IPR000904 (Sec7 domain), IPR016094 (Ribosomal protein L1, 2-layer alpha/beta-sandwich), IPR016095 (Ribosomal protein L1, 3-layer alpha/beta-sandwich), IPR023394 (Sec7 domain, alpha orthogonal bundle), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding), GO:0005086 (ARF guanyl-nucleotide exchange factor activity), GO:0032012 (regulation of ARF protein signal transduction)
Niben101Scf06836g01016.1			Unknown protein		
Niben101Scf01046g05002.1			Unknown protein		
Niben101Scf29981g00012.1	sp|P82979|SARNP_HUMAN	--*-	SAP domain-containing ribonucleoprotein		
Niben101Scf04067g06017.1	emb|CDX73201.1|	***-	BnaC06g36490D [Brassica napus]		
Niben101Scf06976g06029.1	AT2G37420.1	*-**	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf08111g03010.1	AT1G70750.1	*-*-	Protein of unknown function, DUF593 LENGTH=749	IPR007656 (Zein-binding domain)	
Niben101Scf04950g00013.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00782g01007.1	AT5G06470.1	*-*-	Glutaredoxin family protein LENGTH=239	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf08111g01008.1	sp|Q9ZU94|CRR12_ARATH	***-	Cysteine-rich repeat secretory protein 12	IPR002902 (Gnk2-homologous domain)	
Niben101Scf03694g01003.1	sp|P07753|PSBA_CHLRE	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf01774g02019.1	AT1G10150.1	***-	Carbohydrate-binding protein LENGTH=414		
Niben101Scf02647g04002.1	sp|Q6NPD7|NUD10_ARATH	****	Nudix hydrolase 10	IPR003293 (Nudix hydrolase 6-like)	GO:0016787 (hydrolase activity)
Niben101Scf01285g03014.1	gb|ABI34321.1|	--*-	RNase H family protein [Solanum demissum]		
Niben101Scf02891g04010.1	AT2G44190.1	*-*-	Family of unknown function (DUF566) LENGTH=474	IPR007573 (Protein of unknown function DUF566), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf14708g00004.1	ref|XP_002532338.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF30040.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01852g01023.1	AT2G21170.1	****	triosephosphate isomerase LENGTH=315	IPR000652 (Triosephosphate isomerase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004807 (triose-phosphate isomerase activity), GO:0006096 (glycolytic process), GO:0008152 (metabolic process)
Niben101Scf01036g05014.1	AT4G27480.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=421	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf05374g04010.1	sp|Q54YG5|TPPC5_DICDI	*-*-	Trafficking protein particle complex subunit 5	IPR007194 (Transport protein particle (TRAPP) component), IPR024096 (NO signalling/Golgi transport  ligand-binding domain)	
Niben101Scf03856g06015.1	sp|P17098|ZNF8_HUMAN	--*-	Zinc finger protein 8	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01024g04007.1	sp|Q3SRK0|KDSA_NITWN	--*-	2-dehydro-3-deoxyphosphooctonate aldolase		
Niben101Scf01972g03002.1	gb|KEH23784.1|	***-	senescence-associated protein SAG102 [Medicago truncatula]		
Niben101Scf06848g05003.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02346g06001.1	sp|Q871G3|DRE2_NEUCR	*-**	Fe-S cluster assembly protein dre2	IPR007785 (Anamorsin), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005737 (cytoplasm), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf05308g01010.1	sp|Q7XR02|IBH1_ORYSJ	--*-	Transcription factor IBH1	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00485g02022.1	sp|P29535|1A14_SOLLC	***-	1-aminocyclopropane-1-carboxylate synthase 4	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf11472g00014.1	emb|CDY61417.1|	***-	BnaCnng37810D [Brassica napus]		
Niben101Scf05232g02012.1	sp|Q38824|IAA6_ARATH	***-	Auxin-responsive protein IAA6	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf03714g03001.1			Unknown protein		
Niben101Scf04867g00002.1	AT5G59480.1	****	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=282	IPR006439 (HAD hydrolase, subfamily IA), IPR010237 (Pyrimidine 5-nucleotidase), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf03530g02009.1	AT1G77670.1	****	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein LENGTH=440	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00370g03023.1	sp|P46086|KIME_ARATH	****	Mevalonate kinase	IPR006206 (Mevalonate/galactokinase)	GO:0004496 (mevalonate kinase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008152 (metabolic process), GO:0008299 (isoprenoid biosynthetic process), GO:0016301 (kinase activity), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00550g00007.1	sp|Q80UU1|ANKZ1_MOUSE	*-*-	Ankyrin repeat and zinc finger domain-containing protein 1	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf10688g01002.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf05196g00016.1	sp|P93332|NOD3_MEDTR	*-*-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf00981g02004.1	ref|XP_002512801.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF49304.1| conserved hypothetical protein [Ricinus communis]	IPR006904 (Protein of unknown function DUF716 (TMEM45))	
Niben101Scf03873g00015.1	gb|ABG66297.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR008979 (Galactose-binding domain-like), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04096g00007.1	AT5G23310.1	*-**	Fe superoxide dismutase 3 LENGTH=263	IPR001189 (Manganese/iron superoxide dismutase)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00576g02001.1	sp|D2XNQ8|FLOT1_MEDTR	***-	Flotillin-like protein 1	IPR001107 (Band 7 protein)	
Niben101Scf03518g07003.1	sp|Q25AG5|ERG3_ORYSI	***-	Elicitor-responsive protein 3	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00919g02004.1	gb|ABZ05121.1|	*-*-	CPR5, partial [Arabidopsis thaliana]		
Niben101Scf03882g06002.1	sp|Q9D0N7|CAF1B_MOUSE	***-	Chromatin assembly factor 1 subunit B	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02298g01017.1	sp|C3PM38|LPXD_RICAE	***-	UDP-3-O-acylglucosamine N-acyltransferase	IPR007691 (UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase)	GO:0009245 (lipid A biosynthetic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf06424g02024.1	AT1G73260.1	****	kunitz trypsin inhibitor 1 LENGTH=215	IPR002160 (Proteinase inhibitor I3, Kunitz legume)	GO:0004866 (endopeptidase inhibitor activity)
Niben101Scf02074g02012.1	sp|P50534|MSL2_DROME	--*-	E3 ubiquitin-protein ligase msl-2		
Niben101Scf04109g01008.1	sp|Q8W4J3|QSOX1_ARATH	****	Sulfhydryl oxidase 1	IPR012336 (Thioredoxin-like fold), IPR017905 (ERV/ALR sulfhydryl oxidase domain)	GO:0016972 (thiol oxidase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10918g00007.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf03213g03005.1	sp|P0DI74|S61G1_ARATH	****	Protein transport protein Sec61 subunit gamma-1	IPR001901 (Protein translocase complex, SecE/Sec61-gamma subunit), IPR023391 (Protein translocase SecE domain)	GO:0006605 (protein targeting), GO:0006886 (intracellular protein transport), GO:0015031 (protein transport), GO:0015450 (P-P-bond-hydrolysis-driven protein transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf06799g03008.1	emb|CAE03561.2|	*-*-	OsJ_16109 [Oryza sativa Japonica Group]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf09153g05007.1	ref|XP_010109534.1|	*-*-	Histone-lysine N-methyltransferase [Morus notabilis] gb|EXC23138.1| Histone-lysine N-methyltransferase [Morus notabilis]		
Niben101Scf02422g02006.1	sp|Q9S7T8|SPZX_ARATH	*-*-	Serpin-ZX	IPR023796 (Serpin domain)	
Niben101Scf02755g06019.1			Unknown protein		
Niben101Scf03365g04007.1	sp|A8ACD2|RL14_IGNH4	***-	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02074g01052.1	ref|XP_002535856.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf10798g02002.1	sp|Q8LC95|ENL3_ARATH	***-	Early nodulin-like protein 3	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Ctg12907g00001.1	AT2G39430.1	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=322	IPR004265 (Plant disease resistance response protein)	
Niben101Scf07829g00001.1	AT1G15370.1	***-	SNARE-like superfamily protein LENGTH=147		
Niben101Scf02059g02005.1	sp|Q9UHW9|S12A6_HUMAN	--*-	Solute carrier family 12 member 6		
Niben101Scf16764g00011.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf00055g03020.1	AT1G75180.1	***-	Erythronate-4-phosphate dehydrogenase family protein LENGTH=315		
Niben101Scf08871g00007.1	AT5G65290.1	***-	LMBR1-like membrane protein LENGTH=733	IPR006876 (LMBR1-like membrane protein)	
Niben101Scf01008g03018.1	ref|XP_002509435.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF50822.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01890g03014.1			Unknown protein		
Niben101Scf10015g05008.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13231g01017.1	AT5G05170.1	****	Cellulose synthase family protein LENGTH=1065	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf00539g03006.1	sp|Q7XWU8|EXPA1_ORYSJ	***-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf01065g00004.1	ref|XP_007014669.1|	*-*-	ARM repeat superfamily protein isoform 2 [Theobroma cacao] gb|EOY32288.1| ARM repeat superfamily protein isoform 2 [Theobroma cacao]		
Niben101Scf02246g01008.1	AT2G28120.1	***-	Major facilitator superfamily protein LENGTH=577	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf02513g11002.1	sp|Q83E09|RS1_COXBU	--*-	30S ribosomal protein S1		
Niben101Scf05867g02006.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00479g03018.1	AT4G09500.2	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=442		
Niben101Scf02893g01002.1	sp|O24592|NCED1_MAIZE	***-	9-cis-epoxycarotenoid dioxygenase 1, chloroplastic	IPR004294 (Carotenoid oxygenase)	
Niben101Scf02456g00014.1			Unknown protein		
Niben101Scf05043g01008.1	sp|B2LMN7|YCF2_GUIAB	--*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf10126g00007.1	AT5G34930.1	*-**	arogenate dehydrogenase LENGTH=640	IPR012070 (Arogenate/prephenate dehydrogenase)	GO:0004665 (prephenate dehydrogenase (NADP+) activity), GO:0006571 (tyrosine biosynthetic process), GO:0008977 (prephenate dehydrogenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06441g01030.1	AT1G08050.1	*-**	Zinc finger (C3HC4-type RING finger) family protein LENGTH=641	IPR002035 (von Willebrand factor, type A), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08128g00006.1	sp|P56821|EIF3B_TOBAC	****	Eukaryotic translation initiation factor 3 subunit B	IPR011042 (Six-bladed beta-propeller, TolB-like), IPR011400 (Eukaryotic translation initiation factor 3 subunit B), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005852 (eukaryotic translation initiation factor 3 complex), GO:0006413 (translational initiation), GO:0031369 (translation initiation factor binding)
Niben101Scf03396g07010.1	sp|Q6PFJ9|ARI1_DANRE	*-*-	E3 ubiquitin-protein ligase arih1	IPR002867 (Zinc finger, C6HC-type)	GO:0008270 (zinc ion binding)
Niben101Scf05306g00006.1	AT1G07710.1	*-*-	Ankyrin repeat family protein LENGTH=543	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf05500g00009.1	AT1G60140.1	*-**	trehalose phosphate synthase LENGTH=861	IPR003337 (Trehalose-phosphatase), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process)
Niben101Scf02056g00003.1	AT3G07470.1	***-	Protein of unknown function, DUF538 LENGTH=169	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf00974g00001.1	AT5G61040.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=590		
Niben101Scf03766g07024.1	AT2G35880.1	*-*-	TPX2 (targeting protein for Xklp2) protein family LENGTH=432	IPR027329 (TPX2, C-terminal domain)	
Niben101Scf17987g00003.1	sp|P58311|PSAA_WHEAT	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf09696g01106.1	gb|ACX55016.1|	*-*-	pG1 protein [Bacillus amyloliquefaciens]		
Niben101Scf03055g00004.1	sp|F4IWA8|TBL41_ARATH	***-	Protein trichome birefringence-like 41	IPR026057 (PC-Esterase)	
Niben101Scf06525g01001.1	AT3G23700.1	****	Nucleic acid-binding proteins superfamily LENGTH=392	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding)
Niben101Scf18985g01004.1	emb|CDX76892.1|	***-	BnaC08g34780D [Brassica napus]		
Niben101Scf06431g00002.1	tpg|DAA60876.1|	*-*-	TPA: hypothetical protein ZEAMMB73_591499 [Zea mays]		
Niben101Scf04306g00002.1	sp|Q9CHL8|LMRA_LACLA	*-**	Multidrug resistance ABC transporter ATP-binding and permease protein	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf16822g00001.1			Unknown protein		
Niben101Scf26330g00002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10062g00001.1	ref|NP_064106.1|	--*-	orf124 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] dbj|BAA99500.1| orf124 [Beta vulgaris subsp. vulgaris]		
Niben101Scf04861g00014.1	sp|Q9C5U3|PRS8A_ARATH	***-	26S protease regulatory subunit 8 homolog A	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf00383g04027.1	sp|D2Q1C4|MSHA_KRIFD	*-*-	D-inositol 3-phosphate glycosyltransferase	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf09620g07014.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf00783g02011.1	sp|Q54TV2|ABCG5_DICDI	*-*-	ABC transporter G family member 5	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf12694g00001.1	sp|Q79666|POL_HV1MV	--*-	Gag-Pol polyprotein	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf03373g00002.1	sp|P10538|AMYB_SOYBN	****	Beta-amylase	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf10101g00003.1	sp|Q5QA94|ATG18_PICAN	*-*-	Autophagy-related protein 18	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02280g05003.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]		
Niben101Scf06896g01005.1			Unknown protein	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf12928g01005.1	gb|ABA94687.2|	***-	expressed protein [Oryza sativa Japonica Group]	IPR008547 (Protein of unknown function DUF829, TMEM53), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf23874g00013.1	ref|NP_001067775.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf01942g05027.1			Unknown protein		
Niben101Scf00978g15001.1	sp|Q2JV82|RL4_SYNJA	--*-	50S ribosomal protein L4	IPR002136 (Ribosomal protein L4/L1e), IPR023574 (Ribosomal protein L4 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04327g02022.1	sp|Q9SS03|DIR21_ARATH	***-	Dirigent protein 21	IPR004265 (Plant disease resistance response protein)	
Niben101Scf03735g05002.1	sp|P93031|GMD2_ARATH	****	GDP-mannose 4,6 dehydratase 2	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR006368 (GDP-mannose 4,6-dehydratase)	GO:0003824 (catalytic activity), GO:0008446 (GDP-mannose 4,6-dehydratase activity), GO:0019673 (GDP-mannose metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf01374g09001.1	sp|P54847|ACCO3_CUCME	***-	1-aminocyclopropane-1-carboxylate oxidase 3	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf19719g01005.1	AT2G37420.1	****	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf02526g02010.1	sp|B2U092|GARL_SHIB3	***-	5-keto-4-deoxy-D-glucarate aldolase	IPR015813 (Pyruvate/Phosphoenolpyruvate kinase-like domain)	GO:0003824 (catalytic activity)
Niben101Scf01956g10015.1	sp|P93822|ERF97_ARATH	*-**	Ethylene-responsive transcription factor 14	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03128g08006.1	gb|AGK40610.1|	--*-	monooxygenase, partial [Picea purpurea]		
Niben101Scf03309g08024.1	AT1G06330.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=159	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf10786g01004.1	sp|Q6MDI5|FTSH_PARUW	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR005936 (Peptidase, FtsH), IPR011546 (Peptidase M41, FtsH extracellular), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf02583g06006.1	sp|P52885|SAR1_TOBAC	*-**	GTP-binding protein SAR1	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport)
Niben101Scf06065g02003.1	AT3G56040.1	***-	UDP-glucose pyrophosphorylase 3 LENGTH=883	IPR002618 (UTP--glucose-1-phosphate uridylyltransferase family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0008152 (metabolic process), GO:0070569 (uridylyltransferase activity)
Niben101Scf04797g00031.1	emb|CDY37527.1|	***-	BnaA05g33920D [Brassica napus]	IPR006904 (Protein of unknown function DUF716 (TMEM45))	
Niben101Scf02414g05005.1	emb|CDY42132.1|	***-	BnaC05g40870D [Brassica napus]	IPR019149 (Protein of unknown function DUF2048), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01876g01016.1	sp|O24172|ALL6_OLEEU	***-	Major pollen allergen Ole e 6	IPR015333 (Pollen allergen ole e 6)	
Niben101Scf03851g01011.1	sp|Q9LFT0|TBL19_ARATH	***-	Protein trichome birefringence-like 19	IPR026057 (PC-Esterase)	
Niben101Scf00454g01009.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004842 (ubiquitin-protein transferase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016567 (protein ubiquitination), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01773g04003.1	sp|Q9SMX9|SPL1_ARATH	****	Squamosa promoter-binding-like protein 1	IPR004333 (Transcription factor, SBP-box), IPR020683 (Ankyrin repeat-containing domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf01523g00019.1	AT1G64620.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=352	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf28590g00002.1	sp|Q9XQA8|PSBD_POPDE	*-**	Photosystem II D2 protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf03570g03002.1	sp|P78968|PPZ_SCHPO	***-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf28650g00017.1	sp|B5Z8S5|TRPD_HELPG	--*-	Anthranilate phosphoribosyltransferase	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf08895g01007.1	AT1G66540.1	***-	Cytochrome P450 superfamily protein LENGTH=386	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf32374g00004.1	AT5G17270.1	*-*-	Protein prenylyltransferase superfamily protein LENGTH=899		
Niben101Scf06203g01016.1	sp|P52481|CAP2_RAT	***-	Adenylyl cyclase-associated protein 2	IPR001837 (Adenylate cyclase-associated CAP), IPR017901 (C-CAP/cofactor C-like domain), IPR018106 (CAP, conserved site, N-terminal)	GO:0000902 (cell morphogenesis), GO:0003779 (actin binding), GO:0007010 (cytoskeleton organization)
Niben101Scf03004g02017.1	sp|Q9SZL8|FRS5_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 5	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf05109g04003.1	AT2G12646.1	***-	PLATZ transcription factor family protein LENGTH=256	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf05682g00011.1	sp|P9WQB6|AHPC_MYCTO	*-**	Alkyl hydroperoxide reductase subunit C	IPR012336 (Thioredoxin-like fold)	GO:0016209 (antioxidant activity), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf16029g00001.1	ref|XP_002533569.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF28804.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02074g07074.1	gb|AGZ90705.1|	*-*-	maturase, partial (mitochondrion) [Forsskaolea angustifolia]		
Niben101Scf07247g05010.1			Unknown protein		
Niben101Scf02450g03011.1	sp|Q9SSM3|JAL19_ARATH	--*-	Jacalin-related lectin 19	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf28298g00006.1	ref|XP_002518781.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF43706.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf13402g00013.1	AT4G38520.1	****	Protein phosphatase 2C family protein LENGTH=400	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf03203g07012.1	ref|XP_002514181.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF48135.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06004g00020.1	sp|Q9SHK2|PPR17_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf24848g00014.1	sp|Q75HX5|TLP8_ORYSJ	***-	Tubby-like F-box protein 8	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf05417g03027.1	AT4G23100.1	****	glutamate-cysteine ligase LENGTH=522	IPR006336 (Glutamate--cysteine ligase, GCS2)	GO:0004357 (glutamate-cysteine ligase activity), GO:0006750 (glutathione biosynthetic process), GO:0042398 (cellular modified amino acid biosynthetic process)
Niben101Scf00998g04001.1	emb|CEG27580.1|	--*-	RNase H [Bacillus sp. B-jedd]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf16939g00004.1	AT1G49050.1	***-	Eukaryotic aspartyl protease family protein LENGTH=583	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01512g00005.1	sp|Q944K3|HDA2_ARATH	***-	Histone deacetylase 2	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	
Niben101Scf11724g05006.1	sp|B7IM76|TRPB_BACC2	*-**	Tryptophan synthase beta chain	IPR006654 (Tryptophan synthase, beta chain)	GO:0004834 (tryptophan synthase activity), GO:0006568 (tryptophan metabolic process)
Niben101Scf00600g01011.1			Unknown protein		
Niben101Scf13540g02009.1	ref|WP_015111244.1|	****	single-stranded nucleic acid binding R3H domain-containing protein [N [Nostoc sp. PCC 7107]	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf13185g02003.1	sp|Q4VCM1|LCAT2_ARATH	****	Phospholipid--sterol O-acyltransferase	IPR003386 (Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0008374 (O-acyltransferase activity)
Niben101Scf16416g03001.1	gb|KEH39417.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00109g08004.1	sp|Q41001|BCP_PEA	***-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf05437g06007.1	sp|A8MT69|CENPX_HUMAN	--*-	Centromere protein X	IPR018552 (Centromere protein X)	GO:0006281 (DNA repair), GO:0051382 (kinetochore assembly)
Niben101Scf00228g04005.1	sp|Q9Y2H1|ST38L_HUMAN	****	Serine/threonine-protein kinase 38-like	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03602g00005.1	AT5G62570.2	*-*-	Calmodulin binding protein-like LENGTH=494	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf04028g03015.1	sp|Q9SYT0|ANXD1_ARATH	*-*-	Annexin D1	IPR018502 (Annexin repeat)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf02740g13004.1	sp|Q9FJR0|RENT1_ARATH	*-*-	Regulator of nonsense transcripts 1 homolog		
Niben101Scf06774g02015.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00451g00011.1	ref|XP_007028110.1|	--*-	Sister chromatid cohesion 1 protein 4, putative isoform 4 [Theobroma cacao] gb|EOY08612.1| Sister chromatid cohesion 1 protein 4, putative isoform 4 [Theobroma cacao]		
Niben101Scf00415g01004.1	sp|P93821|ACCH7_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 7	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf12737g00004.1			Unknown protein		
Niben101Scf00111g01016.1	sp|O65743|RL24_CICAR	***-	60S ribosomal protein L24	IPR000988 (Ribosomal protein L24e-related), IPR023441 (Ribosomal protein L24e domain), IPR023442 (Ribosomal protein L24e, conserved site)	
Niben101Scf02531g00008.1	sp|Q9SFC7|FB135_ARATH	--*-	F-box protein		
Niben101Scf04675g08015.1	sp|P49043|VPE_CITSI	***-	Vacuolar-processing enzyme	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01124g23009.1	ref|XP_002513164.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF49155.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02573g00011.1			Unknown protein		
Niben101Scf00961g02009.1	sp|P52478|UBC1_CAEEL	***-	Ubiquitin-conjugating enzyme E2 1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf06496g00004.1	sp|O22203|C98A3_ARATH	*-*-	Cytochrome P450 98A3	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02240g03014.1	sp|Q9Z1K8|YLAT1_MOUSE	****	Y+L amino acid transporter 1	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf27793g00001.1	AT1G22400.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05858g00005.1	sp|Q9UBV2|SE1L1_HUMAN	*-*-	Protein sel-1 homolog 1	IPR001810 (F-box domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04290g02006.1			Unknown protein		
Niben101Scf01677g06002.1	sp|P27491|CB27_TOBAC	***-	Chlorophyll a-b binding protein 7, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf00063g06007.1	sp|Q9M5Q1|FUT1_PEA	*-**	Galactoside 2-alpha-L-fucosyltransferase	IPR004938 (Xyloglucan fucosyltransferase)	GO:0008107 (galactoside 2-alpha-L-fucosyltransferase activity), GO:0016020 (membrane), GO:0042546 (cell wall biogenesis)
Niben101Scf07054g04012.1	sp|Q6YW64|DRB4_ORYSJ	*-*-	Double-stranded RNA-binding protein 4	IPR014720 (Double-stranded RNA-binding domain), IPR026939 (At2g23090 like)	
Niben101Scf00039g01003.1	AT5G44440.1	****	FAD-binding Berberine family protein LENGTH=533	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07812g00015.1	sp|Q40704|MADS3_ORYSJ	****	MADS-box transcription factor 3	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf09414g00010.1	AT1G01630.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=255	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf04048g00015.1	ref|YP_009091709.1|	***-	orf109 (mitochondrion) [Panax ginseng] gb|AHJ81034.1| orf109 (mitochondrion) [Panax ginseng]		
Niben101Scf00797g20001.1	sp|Q7KKH3|SDA1_DROME	*-*-	Protein SDA1 homolog	IPR007949 (SDA1 domain), IPR016024 (Armadillo-type fold), IPR027312 (Sda1)	GO:0000055 (ribosomal large subunit export from nucleus), GO:0005488 (binding), GO:0030036 (actin cytoskeleton organization), GO:0042273 (ribosomal large subunit biogenesis)
Niben101Scf00528g00013.1	sp|Q8K9Y9|DNAJ_BUCAP	***-	Chaperone protein DnaJ	IPR012724 (Chaperone DnaJ)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0009408 (response to heat), GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf00245g06005.1	AT5G58530.1	***-	Glutaredoxin family protein LENGTH=273	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01582g03005.1	sp|Q9M5P8|SNAA_SOLTU	***-	Alpha-soluble NSF attachment protein	IPR000744 (NSF attachment protein), IPR001252 (Malate dehydrogenase, active site)	GO:0005515 (protein binding), GO:0006108 (malate metabolic process), GO:0006886 (intracellular protein transport), GO:0016615 (malate dehydrogenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04262g00007.1	sp|F1RAX8|COQ6_DANRE	*-*-	Ubiquinone biosynthesis monooxygenase COQ6	IPR003042 (Aromatic-ring hydroxylase-like)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016709 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen), GO:0055114 (oxidation-reduction process)
Niben101Scf08260g00001.1	gb|ABA99008.2|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf00567g04007.1	sp|Q9FHJ6|RFA1C_ARATH	****	Replication protein A 70 kDa DNA-binding subunit C	IPR001878 (Zinc finger, CCHC-type), IPR004591 (Replication factor A protein 1)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0006310 (DNA recombination), GO:0008270 (zinc ion binding)
Niben101Scf02639g04003.1	sp|Q41001|BCP_PEA	--*-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf00788g00008.1	sp|B5F947|MTOX_SALA4	***-	N-methyl-L-tryptophan oxidase	IPR006076 (FAD dependent oxidoreductase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02145g02002.1			Unknown protein		
Niben101Scf01804g00014.1	sp|Q62205|SCN9A_MOUSE	--*-	Sodium channel protein type 9 subunit alpha		
Niben101Scf08603g00001.1	sp|Q94A40|COPA1_ARATH	***-	Coatomer subunit alpha-1	IPR006692 (Coatomer, WD associated region), IPR010714 (Coatomer, alpha subunit, C-terminal), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005198 (structural molecule activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030126 (COPI vesicle coat)
Niben101Scf05391g01016.1	sp|Q58DW6|RAB25_BOVIN	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf01327g01019.1			Unknown protein		
Niben101Scf00360g05007.1	gb|AEZ02540.1|	--*-	shattering 4, partial [Oryza rufipogon]	IPR017877 (Myb-like domain)	
Niben101Scf01334g01003.1	ref|NP_001042782.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf02694g00004.1	sp|Q0JF02|CPS4_ORYSJ	*-**	Syn-copalyl diphosphate synthase	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf02509g00004.1	sp|P93755|C3H30_ARATH	***-	Zinc finger CCCH domain-containing protein 30	IPR000571 (Zinc finger, CCCH-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf01775g03002.1	ref|XP_002512598.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF50050.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01687g01006.1	gb|AAC72541.1|	***-	male sterility MS5 [Arabidopsis thaliana]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf14282g00010.1	sp|Q9T0D6|PP306_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02820g00010.1	emb|CDY09698.1|	--*-	BnaC07g33630D [Brassica napus]		
Niben101Scf28590g00003.1	sp|Q2MIJ1|PSBC_SOLBU	*-**	Photosystem II CP43 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf01033g02012.1	gb|ACG69536.1|	*-*-	caleosin CLO1-4 [Brassica napus]	IPR007736 (Caleosin)	
Niben101Scf02621g04025.1	sp|Q5R654|RBBP7_PONAB	****	Histone-binding protein RBBP7	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR022052 (Histone-binding protein RBBP4, N-terminal)	GO:0005515 (protein binding)
Niben101Scf03238g03002.1	sp|A8GPZ6|ATPA_RICAH	*-*-	ATP synthase subunit alpha	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03929g06012.1	sp|Q9LJB7|BBX32_ARATH	*-**	B-box zinc finger protein 32	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf14458g00009.1	sp|Q94C70|NAT2_ARATH	****	Nucleobase-ascorbate transporter 2	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf07522g00004.1	ref|NP_001288856.1|	****	mitochondrial outer membrane protein porin 3-like [Brassica rapa] gb|AAS21632.1| voltage-dependent anion-selective channel protein [Brassica rapa]	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0006820 (anion transport), GO:0008308 (voltage-gated anion channel activity), GO:0044070 (regulation of anion transport), GO:0055085 (transmembrane transport)
Niben101Scf01237g03007.1	gb|ABD66598.1|	****	iron-binding protein [Pyrus pyrifolia]	IPR001519 (Ferritin), IPR008331 (Ferritin/DPS protein domain), IPR009078 (Ferritin-like superfamily)	GO:0006826 (iron ion transport), GO:0006879 (cellular iron ion homeostasis), GO:0008199 (ferric iron binding)
Niben101Scf01657g01002.1	sp|Q72GU1|ODBA_THET2	***-	2-oxoisovalerate dehydrogenase subunit alpha	IPR001017 (Dehydrogenase, E1 component), IPR029061 (Thiamin diphosphate-binding fold)	GO:0008152 (metabolic process), GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor)
Niben101Scf19957g00002.1			Unknown protein		
Niben101Scf11241g00009.1	AT4G04614.1	***-	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). LENGTH=176		
Niben101Scf06392g01011.1	sp|P42552|S1FA_SPIOL	--**	DNA-binding protein S1FA	IPR006779 (DNA binding protein S1FA)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04777g06010.1	ref|XP_007018290.1|	--*-	Rhamnogalacturonate lyase family protein [Theobroma cacao] gb|EOY15515.1| Rhamnogalacturonate lyase family protein [Theobroma cacao]	IPR010325 (Rhamnogalacturonate lyase)	
Niben101Scf05417g03025.1	ref|XP_007040229.1|	***-	Rpr2/Rpp21 subunit-like protein [Theobroma cacao] gb|EOY24730.1| Rpr2/Rpp21 subunit-like protein [Theobroma cacao]	IPR007175 (RNAse P, Rpr2/Rpp21 subunit)	
Niben101Scf00654g04006.1	sp|F4JC97|PSME4_ARATH	*-*-	Proteasome activator subunit 4		
Niben101Scf08669g00006.1	AT4G33200.1	*-**	myosin, putative LENGTH=1522	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf02170g02011.1	sp|Q9C519|WRKY6_ARATH	****	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02211g02009.1	gb|AAT66777.2|	***-	Late blight resistance protein, putative [Solanum demissum]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf05813g01012.1			Unknown protein		
Niben101Scf01888g04026.1	gb|KEH42219.1|	*-*-	Nop14 nucleolar-like protein [Medicago truncatula]	IPR007276 (Nucleolar protein 14)	GO:0032040 (small-subunit processome)
Niben101Scf10436g01011.1	sp|P40986|CDC1_YEAST	***-	Cell division control protein 1	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf01777g03031.1	AT2G26180.1	***-	IQ-domain 6 LENGTH=416	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf00544g00003.1	sp|Q2JUX7|RS12_SYNJA	*-**	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf02807g03003.1	AT3G21790.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=495	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf07405g02008.1	emb|CDY32823.1|	-**-	BnaC08g02450D [Brassica napus]		
Niben101Scf14945g01010.1	sp|Q84MB3|ACCH1_ARATH	*-*-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf09262g01017.1	sp|P13853|HS17C_ARATH	***-	17.6 kDa class I heat shock protein 3	IPR008978 (HSP20-like chaperone)	
Niben101Scf14079g00006.1	sp|A2YQU8|SLU7_ORYSI	*-*-	Pre-mRNA-splicing factor SLU7	IPR021715 (Pre-mRNA splicing Prp18-interacting factor)	
Niben101Scf02188g00002.1	sp|Q9SI37|WRKY1_ARATH	--**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01980g07001.1	dbj|BAD26399.1|	****	membrane transport protein-like [Oryza sativa Japonica Group]	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00369g18020.1	sp|Q9H6B9|EPHX3_HUMAN	***-	Epoxide hydrolase 3	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf05862g00006.1	AT4G27280.1	****	Calcium-binding EF-hand family protein LENGTH=130	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf07428g00012.1	sp|Q94BT2|AIR12_ARATH	*-*-	Auxin-induced in root cultures protein 12	IPR005018 (DOMON domain)	
Niben101Scf07965g00003.1	AT4G32660.1	*-**	Protein kinase superfamily protein LENGTH=400	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13103g01036.1	sp|Q9SD34|C3H44_ARATH	*-**	Zinc finger CCCH domain-containing protein 44	IPR003121 (SWIB/MDM2 domain), IPR003169 (GYF), IPR004343 (Plus-3), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006352 (DNA-templated transcription, initiation), GO:0008270 (zinc ion binding), GO:0016570 (histone modification)
Niben101Scf05584g02018.1	sp|Q9FK13|PDV1_ARATH	--*-	Plastid division protein PDV1		
Niben101Scf06621g02031.1	sp|O75131|CPNE3_HUMAN	***-	Copine-3	IPR000008 (C2 domain), IPR002035 (von Willebrand factor, type A), IPR010734 (Copine)	GO:0005515 (protein binding)
Niben101Scf01181g04007.1	sp|P86809|NLTP2_APIGA	***-	Non-specific lipid-transfer protein 2	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf01623g11001.1	emb|CDY15257.1|	***-	BnaC05g01360D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf01300g01002.1	ref|XP_007044529.1|	***-	RNase H family protein, putative isoform 3 [Theobroma cacao] gb|EOY00361.1| RNase H family protein, putative isoform 3 [Theobroma cacao]	IPR011320 (Ribonuclease H1, N-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf04643g02011.1	AT3G53220.1	***-	Thioredoxin superfamily protein LENGTH=126	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf28650g00015.1	gb|AAP53948.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]		
Niben101Scf08535g03013.1	gb|KEH32455.1|	***-	stress responsive A/B barrel domain protein [Medicago truncatula]	IPR011008 (Dimeric alpha-beta barrel)	
Niben101Scf00984g12003.1	sp|Q39262|ZFP3_ARATH	*-*-	Zinc finger protein 3		
Niben101Scf06793g07009.1	sp|A3CRB9|ECFA1_STRSV	*-*-	Energy-coupling factor transporter ATP-binding protein EcfA1	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00442g00003.1			Unknown protein		
Niben101Scf00091g01026.1	sp|Q8RX01|Y3567_ARATH	***-	BTB/POZ domain-containing protein		
Niben101Scf07165g01007.1	sp|Q8VE10|NAA40_MOUSE	****	N-alpha-acetyltransferase 40	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf08357g01012.1	sp|Q9FJL0|SMC4_ARATH	***-	Structural maintenance of chromosomes protein 4	IPR003395 (RecF/RecN/SMC, N-terminal), IPR010935 (SMCs flexible hinge), IPR024704 (Structural maintenance of chromosomes protein), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0051276 (chromosome organization)
Niben101Scf05372g05015.1	ref|XP_003597166.1|	***-	Vicilin-like antimicrobial peptides 2-3 [Medicago truncatula]	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf06553g00007.1	sp|F4HQX1|JAL3_ARATH	***-	Jacalin-related lectin 3	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf09387g04001.1	AT3G60690.1	***-	SAUR-like auxin-responsive protein family LENGTH=170	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf07391g00016.1	sp|Q9LYP4|BAG3_ARATH	****	BAG family molecular chaperone regulator 3	IPR003103 (BAG domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf01740g17006.1	sp|Q9QXA5|LSM4_MOUSE	***-	U6 snRNA-associated Sm-like protein LSm4	IPR010920 (Like-Sm (LSM) domain), IPR027141 (U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3)	
Niben101Scf01704g03008.1	dbj|BAA97290.1|	--*-	non-LTR retroelement reverse transcriptase-like [Arabidopsis thaliana]		
Niben101Scf12628g00011.1	sp|Q7ZVC4|CHM4B_DANRE	*-*-	Charged multivesicular body protein 4b	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf04574g08001.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01658g02014.1	sp|A6VMT9|RL27_ACTSZ	***-	50S ribosomal protein L27	IPR001684 (Ribosomal protein L27)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06720g01025.1	AT1G10200.1	****	GATA type zinc finger transcription factor family protein LENGTH=190	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf08026g02002.1	sp|O49696|ALMTC_ARATH	****	Aluminum-activated malate transporter 12	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf12210g01011.1	sp|P93005|PP181_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00355g04002.1	AT4G14090.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=456	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05043g01007.1			Unknown protein		
Niben101Scf08112g01018.1	sp|O04004|NLTP6_AMBAR	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf03952g02013.1	sp|O04004|NLTP6_AMBAR	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf06538g02001.1	AT2G27660.1	*-*-	Cysteine/Histidine-rich C1 domain family protein LENGTH=718	IPR004146 (DC1)	
Niben101Scf15653g01007.1			Unknown protein		
Niben101Scf07693g00006.1	sp|P38389|SC61B_ARATH	*-*-	Protein transport protein Sec61 subunit beta	IPR016482 (Protein transport protein SecG/Sec61-beta/Sbh1)	
Niben101Scf01559g01014.1	AT3G21790.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=495	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00332g12013.1	sp|Q947G8|GOLS1_SOLLC	***-	Galactinol synthase 1	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf05078g02016.1	AT4G24970.1	***-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=707	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf05937g02011.1	ref|NP_001062770.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf01274g00009.1	AT4G19420.1	***-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf09973g00002.1	AT1G18640.2	****	3-phosphoserine phosphatase LENGTH=295	IPR006383 (HAD-superfamily hydrolase, subfamily IB, PSPase-like), IPR023190 (Phosphoserine phosphatase, domain 2), IPR023214 (HAD-like domain)	GO:0004647 (phosphoserine phosphatase activity), GO:0006564 (L-serine biosynthetic process), GO:0008152 (metabolic process), GO:0016791 (phosphatase activity)
Niben101Scf02606g00014.1	AT5G47890.1	***-	NADH-ubiquinone oxidoreductase B8 subunit, putative LENGTH=97	IPR012336 (Thioredoxin-like fold), IPR016464 (NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2)	
Niben101Scf17408g00009.1	sp|Q9LN01|PPR21_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00177g09011.1			Unknown protein		
Niben101Scf22578g00003.1	ref|YP_009091714.1|	***-	orf105 (mitochondrion) [Panax ginseng] gb|AHJ81036.1| orf105 (mitochondrion) [Panax ginseng]		
Niben101Scf23305g01001.1	sp|Q9SND4|HEC2_ARATH	*-*-	Transcription factor HEC2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf07089g00004.1			Unknown protein		
Niben101Scf10885g00020.1			Unknown protein		
Niben101Scf04131g01025.1	sp|O75643|U520_HUMAN	*-*-	U5 small nuclear ribonucleoprotein 200 kDa helicase	IPR004179 (Sec63 domain)	
Niben101Scf07579g03002.1	sp|Q9Y394|DHRS7_HUMAN	*-**	Dehydrogenase/reductase SDR family member 7	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01020g01002.1	sp|P27495|CB24_TOBAC	***-	Chlorophyll a-b binding protein 40, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf00301g03001.1	AT5G06839.3	****	bZIP transcription factor family protein LENGTH=460	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02074g04006.1			Unknown protein		
Niben101Scf05146g08003.1	AT1G15030.1	*-*-	Protein of unknown function (DUF789) LENGTH=360	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf06999g00010.1	gb|KEH42163.1|	***-	heparan-alpha-glucosaminide N-acetyltransferase-like protein [Medicago truncatula]		
Niben101Scf00474g09002.1	dbj|BAB01940.1|	--*-	non-LTR retrolelement reverse transcriptase-like protein [Arabidopsis thaliana]		
Niben101Scf02929g00075.1	ref|YP_005090400.1|	*-*-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Ctg08373g00001.1	AT1G44750.1	*-*-	purine permease 11 LENGTH=379	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf01147g00001.1	sp|O08863|BIRC3_MOUSE	--*-	Baculoviral IAP repeat-containing protein 3		
Niben101Scf01249g04006.1	sp|A4K2S1|STK4_LEMCA	****	Serine/threonine-protein kinase 4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02864g00003.1			Unknown protein		
Niben101Scf08304g06013.1			Unknown protein		
Niben101Scf06280g05018.1	sp|Q55389|FTRC_SYNY3	****	Ferredoxin-thioredoxin reductase, catalytic chain	IPR004209 (Ferredoxin thioredoxin reductase beta subunit, domain), IPR024707 (Ferredoxin-thioredoxin reductase, beta subunit)	GO:0016730 (oxidoreductase activity, acting on iron-sulfur proteins as donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00854g05042.1	ref|YP_009091709.1|	*-*-	orf109 (mitochondrion) [Panax ginseng] gb|AHJ81034.1| orf109 (mitochondrion) [Panax ginseng]		
Niben101Scf03404g00007.1	emb|CDY22360.1|	***-	BnaA06g36820D [Brassica napus]	IPR006747 (Protein of unknown function DUF599)	
Niben101Scf06467g03010.1	sp|Q9H1I8|ASCC2_HUMAN	*-*-	Activating signal cointegrator 1 complex subunit 2	IPR009060 (UBA-like)	GO:0005515 (protein binding)
Niben101Scf07365g01012.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein		
Niben101Scf01413g01001.1	sp|Q9SCV4|BGAL8_ARATH	*-*-	Beta-galactosidase 8	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01094g00006.1			Unknown protein		
Niben101Scf21739g00001.1			Unknown protein		
Niben101Scf00761g05005.1	dbj|BAD83458.2|	--*-	cytochrome c maturation protein CcmFN (mitochondrion) [Nicotiana tabacum]		
Niben101Scf01826g07012.1	AT3G02830.1	*-*-	zinc finger protein 1 LENGTH=397	IPR000571 (Zinc finger, CCCH-type), IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01683g06006.1			Unknown protein		
Niben101Scf00568g04010.1	sp|P61242|YCF2_SOLLC	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf05860g01017.1	AT3G13070.1	***-	CBS domain-containing protein / transporter associated domain-containing protein LENGTH=661	IPR000644 (CBS domain), IPR002550 (Domain of unknown function DUF21), IPR016169 (CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2)	GO:0050660 (flavin adenine dinucleotide binding)
Niben101Scf01655g01028.1	sp|Q80WS3|FBLL1_MOUSE	*-**	rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1	IPR000692 (Fibrillarin), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0006364 (rRNA processing), GO:0008033 (tRNA processing), GO:0008168 (methyltransferase activity)
Niben101Scf02632g00020.1	sp|Q61749|EI2BD_MOUSE	***-	Translation initiation factor eIF-2B subunit delta	IPR000649 (Initiation factor 2B-related)	GO:0044237 (cellular metabolic process)
Niben101Scf08196g00009.1	sp|Q2TA10|UB2D1_BOVIN	***-	Ubiquitin-conjugating enzyme E2 D1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf03392g03013.1	sp|O22822|U74F2_ARATH	--*-	UDP-glycosyltransferase 74F2		
Niben101Scf01221g02001.1	sp|Q9RTI6|LEUC2_DEIRA	***-	3-isopropylmalate dehydratase large subunit 2	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf03185g01009.1	sp|B6EGU1|FADA_ALISL	***-	3-ketoacyl-CoA thiolase	IPR002155 (Thiolase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf10254g01002.1	sp|Q9FUT0|GSTU9_ARATH	***-	Glutathione S-transferase U9	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf03969g00012.1	sp|Q5R8D0|GALE_PONAB	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005886 (UDP-glucose 4-epimerase GalE), IPR025308 (UDP-glucose 4-epimerase C-terminal domain)	GO:0003824 (catalytic activity), GO:0003978 (UDP-glucose 4-epimerase activity), GO:0006012 (galactose metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf10196g01001.1	sp|O80831|BAM7_ARATH	****	Beta-amylase 7	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf00141g02008.1	emb|CBM56257.1|	****	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05506g08003.1	dbj|BAO50886.1|	*-*-	cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]		
Niben101Scf01073g04023.1	sp|Q9FIX3|PP407_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf12159g00012.1	sp|Q8LC83|RS242_ARATH	***-	40S ribosomal protein S24-2	IPR001976 (Ribosomal protein S24e), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09883g01010.1	AT2G33590.1	****	NAD(P)-binding Rossmann-fold superfamily protein LENGTH=321	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf10482g00006.1	sp|Q8H157|PTR19_ARATH	***-	Protein NRT1/ PTR FAMILY 4.6	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00338g00011.1	sp|P0CW07|DNAJ_METMA	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf03600g03007.1	AT5G14260.3	***-	Rubisco methyltransferase family protein LENGTH=514	IPR013761 (Sterile alpha motif/pointed domain), IPR015353 (Rubisco LSMT, substrate-binding domain)	GO:0005515 (protein binding)
Niben101Scf03643g05001.1	sp|Q65JV0|PYRB_BACLD	--*-	Aspartate carbamoyltransferase		
Niben101Scf00846g03001.1	emb|CDY14541.1|	*-*-	BnaC03g49180D [Brassica napus]		
Niben101Scf00568g04071.1	sp|Q3V535|PSAB_ACOCL	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf13617g00001.1	AT4G00340.1	****	receptor-like protein kinase 4 LENGTH=818	IPR000742 (Epidermal growth factor-like domain), IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf01225g04030.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01392g00011.1	AT4G27720.1	***-	Major facilitator superfamily protein LENGTH=460	IPR008509 (Molybdate-anion transporter MOT2), IPR020846 (Major facilitator superfamily domain)	GO:0015098 (molybdate ion transmembrane transporter activity), GO:0015689 (molybdate ion transport), GO:0016021 (integral component of membrane)
Niben101Scf01795g10003.1	AT1G53570.1	****	mitogen-activated protein kinase kinase kinase 3 LENGTH=609	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02921g00004.1	sp|P19515|LIP_RHIMI	--*-	Lipase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf05675g01018.1	AT4G00340.1	*-**	receptor-like protein kinase 4 LENGTH=818	IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10278g02003.1			Unknown protein		
Niben101Scf09854g02023.1	sp|Q9LUM1|LOR11_ARATH	--*-	Protein LURP-one-related 11	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf08586g05005.1	AT1G18160.1	*-*-	Protein kinase superfamily protein LENGTH=992		
Niben101Scf03441g00006.1	sp|Q9SRL8|LBD21_ARATH	***-	LOB domain-containing protein 21	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf01811g01005.1	sp|Q39265|ZFP6_ARATH	*-*-	Zinc finger protein 6	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf02508g09008.1	ref|XP_002515962.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46382.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00077g08025.1	AT5G65550.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=466	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03817g03026.1	ref|XP_002535169.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF27214.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02500g01015.1	sp|A1L3M3|YLAT2_XENLA	-***	Y+L amino acid transporter 2	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf04434g00033.1	AT2G38000.1	***-	chaperone protein dnaJ-related LENGTH=419		
Niben101Scf00782g01005.1	sp|Q9D020|5NT3A_MOUSE	****	Cytosolic 5'-nucleotidase 3A	IPR006434 (Pyrimidine 5'-nucleotidase, eukaryotic), IPR023214 (HAD-like domain)	GO:0000287 (magnesium ion binding), GO:0005737 (cytoplasm), GO:0008253 (5'-nucleotidase activity)
Niben101Scf06928g01009.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12541g00019.1			Unknown protein		
Niben101Scf02669g05009.1	sp|Q9SKN2|DRB2_ARATH	***-	Double-stranded RNA-binding protein 2	IPR014720 (Double-stranded RNA-binding domain)	
Niben101Ctg14566g00003.1	sp|P27082|SODC_NICPL	****	Superoxide dismutase [Cu-Zn]	IPR001424 (Superoxide dismutase, copper/zinc binding domain)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf12210g08007.1	sp|Q9FIB6|PS12A_ARATH	***-	26S proteasome non-ATPase regulatory subunit 12 homolog A	IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf01372g10013.1	sp|Q3L181|PERR_RAUSE	***-	Perakine reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf01899g07007.1	AT1G80560.1	****	isopropylmalate dehydrogenase 2 LENGTH=405	IPR001804 (Isocitrate and isopropylmalate dehydrogenases family), IPR024084 (Isopropylmalate dehydrogenase-like domain)	GO:0000287 (magnesium ion binding), GO:0003862 (3-isopropylmalate dehydrogenase activity), GO:0005737 (cytoplasm), GO:0009098 (leucine biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf18348g01027.1	gb|AEK83139.1|	***-	At1g47750-like protein [Capsella grandiflora]	IPR008733 (Peroxisomal biogenesis factor 11)	GO:0005779 (integral component of peroxisomal membrane), GO:0016559 (peroxisome fission)
Niben101Scf10438g02005.1	AT1G78290.2	*-**	Protein kinase superfamily protein LENGTH=343	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06263g01001.1	AT4G35630.1	****	phosphoserine aminotransferase LENGTH=430	IPR015424 (Pyridoxal phosphate-dependent transferase), IPR022278 (Phosphoserine aminotransferase)	GO:0003824 (catalytic activity), GO:0004648 (O-phospho-L-serine:2-oxoglutarate aminotransferase activity), GO:0006564 (L-serine biosynthetic process), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00246g04009.1	AT3G62450.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=74		
Niben101Scf06674g00012.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf29144g00011.1	sp|P85894|LTP1_MORNI	****	Non-specific lipid-transfer protein 1	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf08235g00015.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06358g00012.1	sp|Q9FH05|SCP42_ARATH	****	Serine carboxypeptidase-like 42	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04444g07001.1			Unknown protein		
Niben101Scf03747g00006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10689g00002.1	sp|Q07878|VPS13_YEAST	--*-	Vacuolar protein sorting-associated protein 13	IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf00135g01009.1	sp|Q5I4F9|AQP4_NOTAL	***-	Aquaporin-4	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02074g06014.1	ref|XP_002520077.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF42401.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11940g00002.1	sp|Q87LP0|ERA_VIBPA	*-*-	GTPase Era	IPR005225 (Small GTP-binding protein domain), IPR009019 (K homology domain, prokaryotic type), IPR015946 (K homology domain-like, alpha/beta), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003723 (RNA binding), GO:0005525 (GTP binding)
Niben101Ctg06307g00001.1	sp|C3PCC6|PCKA_BACAA	*-**	Phosphoenolpyruvate carboxykinase [ATP]	IPR001272 (Phosphoenolpyruvate carboxykinase, ATP-utilising)	GO:0004611 (phosphoenolpyruvate carboxykinase activity), GO:0004612 (phosphoenolpyruvate carboxykinase (ATP) activity), GO:0005524 (ATP binding), GO:0006094 (gluconeogenesis), GO:0017076 (purine nucleotide binding)
Niben101Scf06564g00007.1	gb|AES59259.2|	*-*-	F-box/RNI/FBD-like domain protein [Medicago truncatula]	IPR004868 (DNA-directed DNA polymerase, family B, mitochondria/virus), IPR013101 (Leucine-rich repeat 2)	GO:0000166 (nucleotide binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf06825g02001.1	AT1G73340.1	***-	Cytochrome P450 superfamily protein LENGTH=514	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08151g00002.1	emb|CDX77401.1|	*-*-	BnaA07g05390D [Brassica napus]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf02576g00035.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00085g03003.1	sp|B2UMY1|FTSH_AKKM8	*-**	ATP-dependent zinc metalloprotease FtsH	IPR000642 (Peptidase M41), IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis)
Niben101Scf00621g01009.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03446g08015.1	sp|P54772|DCHS_SOLLC	***-	Histidine decarboxylase	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf10528g02005.1	sp|Q9P6R0|TF3B_SCHPO	--**	Transcription factor IIIB 60 kDa subunit	IPR000812 (Transcription factor TFIIB), IPR011665 (Brf1, TBP-binding domain)	GO:0000126 (transcription factor TFIIIB complex), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0006384 (transcription initiation from RNA polymerase III promoter), GO:0008270 (zinc ion binding)
Niben101Scf03577g00018.1	AT3G23700.1	****	Nucleic acid-binding proteins superfamily LENGTH=392	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding)
Niben101Scf13950g00011.1	sp|Q5XEM9|ALFL5_ARATH	***-	PHD finger protein ALFIN-LIKE 5	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR021998 (Alfin)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0042393 (histone binding)
Niben101Scf03701g01002.1	emb|CDY35227.1|	*-*-	BnaA01g08040D [Brassica napus]		
Niben101Scf09623g00016.1	AT1G55370.2	***-	NDH-dependent cyclic electron flow 5 LENGTH=354	IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf08812g00005.1	sp|Q8BP31|RN122_MOUSE	--*-	RING finger protein 122	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02322g00001.1	ref|YP_005090400.1|	*-*-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf00109g10011.1			Unknown protein		
Niben101Scf01061g08039.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09628g00021.1	sp|Q4P7X6|IWS1_USTMA	*-**	Transcription factor IWS1	IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf03531g00010.1	sp|Q9HDW7|ATC2_SCHPO	*-*-	Calcium-transporting ATPase 2	IPR006068 (Cation-transporting P-type ATPase, C-terminal), IPR008250 (P-type ATPase, A  domain), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0046872 (metal ion binding)
Niben101Scf02239g06009.1	sp|A3N2D8|MNME_ACTP2	--*-	tRNA modification GTPase MnmE	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf01402g01007.1	ref|XP_002517421.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF44963.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf09705g00017.1	AT5G48620.1	*-*-	Disease resistance protein (CC-NBS-LRR class) family LENGTH=908	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01075g01015.1	AT2G28480.1	*-**	RNA-binding CRS1 / YhbY (CRM) domain protein LENGTH=372	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf01984g00023.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]	IPR002182 (NB-ARC)	GO:0043531 (ADP binding)
Niben101Scf39386g00004.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01795g08010.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04400g04011.1	AT3G02130.1	****	receptor-like protein kinase 2 LENGTH=1151	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03810g06004.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]		
Niben101Scf09172g01012.1	sp|Q9C9Q4|JAC1_ARATH	***-	J domain-containing protein required for chloroplast accumulation response 1	IPR001623 (DnaJ domain)	
Niben101Scf05853g03004.1	sp|A5WUL3|MED22_DANRE	--**	Mediator of RNA polymerase II transcription subunit 22	IPR009332 (Mediator complex, subunit Med22)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf03236g03019.1	gb|KEH27032.1|	*-*-	DUF1666 family protein [Medicago truncatula]	IPR012870 (Protein of unknown function DUF1666)	
Niben101Scf11291g00008.1	sp|Q0KF69|HSLU_CUPNH	--*-	ATP-dependent protease ATPase subunit HslU		
Niben101Scf05449g01004.1	sp|Q42881|1A13_SOLLC	***-	1-aminocyclopropane-1-carboxylate synthase 3	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf08635g05005.1	AT4G34980.1	****	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06203g01017.1	sp|Q9LV48|PERK1_ARATH	--*-	Proline-rich receptor-like protein kinase PERK1		
Niben101Scf09172g01013.1	AT5G35730.1	***-	EXS (ERD1/XPR1/SYG1) family protein LENGTH=457	IPR004342 (EXS, C-terminal), IPR018247 (EF-Hand 1, calcium-binding site)	GO:0016021 (integral component of membrane)
Niben101Scf02366g04010.1	AT5G66710.1	****	Protein kinase superfamily protein LENGTH=405	IPR011009 (Protein kinase-like domain), IPR015784 (Putative serine/threonine-protein kinase, plants)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02363g00026.1	sp|Q54JS5|WDR24_DICDI	*-*-	WD repeat-containing protein 24 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR022052 (Histone-binding protein RBBP4, N-terminal)	GO:0005515 (protein binding)
Niben101Scf03004g02016.1	AT4G35440.2	*-**	chloride channel E LENGTH=749	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf12092g00014.1	sp|P52614|FLIK_ECOLI	--*-	Flagellar hook-length control protein		
Niben101Ctg10800g00001.1	AT4G11790.1	*-*-	Pleckstrin homology (PH) domain superfamily protein LENGTH=443		
Niben101Scf11108g03011.1	emb|CDY33260.1|	*-*-	BnaC01g37330D [Brassica napus]		
Niben101Scf09123g00002.1	gb|ABF95146.1|	***-	OTU-like cysteine protease family protein, expressed [Oryza sativa Japonica Group]	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf00109g10010.1	gb|KEH36918.1|	--*-	F-box protein interaction domain protein [Medicago truncatula]		
Niben101Scf05066g02005.1	AT5G13210.1	*-*-	Uncharacterised conserved protein UCP015417, vWA LENGTH=673	IPR002035 (von Willebrand factor, type A), IPR024553 (Domain of unknown function DUF2828)	
Niben101Scf02990g06003.1	AT4G37800.1	****	xyloglucan endotransglucosylase/hydrolase 7 LENGTH=293	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf01903g02005.1			Unknown protein		
Niben101Scf01171g09009.1	AT5G07330.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=165		
Niben101Scf01789g02041.1	sp|P84634|DCL4_ARATH	--*-	Dicer-like protein 4		
Niben101Scf03923g01014.1	sp|Q84M93|MPK17_ARATH	--*-	Mitogen-activated protein kinase 17	IPR011009 (Protein kinase-like domain), IPR015655 (Protein phosphatase 2C)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00416g05005.1	sp|Q9LZB2|GDL74_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00536g15010.1	sp|Q9SBL6|CHS3_SORBI	***-	Chalcone synthase 3	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0009058 (biosynthetic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf05061g00008.1	sp|O14012|RRP17_SCHPO	--*-	Ribosomal RNA-processing protein 17	IPR019186 (Nucleolar protein 12)	
Niben101Scf13950g00010.1	sp|Q58860|THRC_METJA	*-*-	Threonine synthase	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme), IPR004450 (Threonine synthase-like)	GO:0006520 (cellular amino acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf06142g00005.1	sp|Q2JIL3|RL6_SYNJB	*-*-	50S ribosomal protein L6	IPR000702 (Ribosomal protein L6)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf18985g00002.1	sp|Q8YUA5|DNAJ_NOSS1	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR015399 (Domain of unknown function DUF1977, DnaJ-like)	
Niben101Scf01433g03011.1	sp|Q944S9|MAD16_ORYSJ	****	MADS-box transcription factor 16	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf00278g13003.1			Unknown protein		
Niben101Scf04109g01009.1	AT2G01275.1	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=259	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022143 (Protein of unknown function DUF3675)	GO:0008270 (zinc ion binding)
Niben101Scf02298g01016.1	ref|XP_002518868.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF43401.1| conserved hypothetical protein [Ricinus communis]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf07991g00004.1	gb|KFM76333.1|	--*-	Beclin 1-associated autophagy-related key regulator, partial [Stegodyphus mimosarum]		
Niben101Scf02074g01051.1	ref|XP_002527955.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF34444.1| conserved hypothetical protein [Ricinus communis]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf04360g00003.1	sp|Q6NKW7|PP164_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf18703g00007.1	AT5G35750.1	****	histidine kinase 2 LENGTH=1176	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR006189 (CHASE), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08998g00004.1	ref|NP_001053680.1|	*-*-	product [Oryza sativa Japonica Group]	IPR007650 (Zf-FLZ domain)	
Niben101Scf02929g06098.1			Unknown protein		
Niben101Scf00111g01017.1	AT5G03795.1	***-	Exostosin family protein LENGTH=518	IPR004263 (Exostosin-like)	
Niben101Scf15476g01004.1	sp|Q9FZE0|BGL40_ARATH	*-*-	Beta-glucosidase 40	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03816g02010.1	sp|P74227|EFTU_SYNY3	****	Elongation factor Tu	IPR004541 (Translation elongation factor EFTu/EF1A, bacterial/organelle), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006414 (translational elongation)
Niben101Scf02033g02022.1	sp|Q50EK3|C04C1_PINTA	*-*-	Cytochrome P450 704C1		
Niben101Scf08604g00011.1	sp|D0MGU8|FTSH_RHOM4	*-**	ATP-dependent zinc metalloprotease FtsH	IPR000642 (Peptidase M41)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis)
Niben101Scf05437g06008.1	gb|KEH21336.1|	*-*-	nucleotide-diphospho-sugar transferase domain protein [Medicago truncatula]		
Niben101Scf07019g01004.1	AT2G17890.1	****	calcium-dependent protein kinase 16 LENGTH=571	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01599g00002.1			Unknown protein		
Niben101Scf02250g03015.1	sp|Q66HG1|DMTF1_RAT	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02358g03021.1	sp|A2YEZ6|SAP8_ORYSI	*-**	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	IPR000058 (Zinc finger, AN1-type), IPR016094 (Ribosomal protein L1, 2-layer alpha/beta-sandwich), IPR016095 (Ribosomal protein L1, 3-layer alpha/beta-sandwich), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding), GO:0008270 (zinc ion binding)
Niben101Scf05404g07006.1	sp|P0CI03|PTR28_ARATH	*-*-	Protein NRT1/ PTR FAMILY 5.6	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf09331g00015.1			Unknown protein		
Niben101Scf05822g06005.1	AT1G68185.1	***-	Ubiquitin-like superfamily protein LENGTH=215		
Niben101Scf16532g00006.1	AT1G43770.2	*-*-	RING/FYVE/PHD zinc finger superfamily protein LENGTH=431	IPR003656 (Zinc finger, BED-type)	GO:0003677 (DNA binding)
Niben101Scf10036g00003.1	sp|Q96W30|HSP72_PARBA	*-*-	Heat shock 70 kDa protein 2	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf01008g03017.1	AT2G33847.1	*-*-	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=93		
Niben101Scf09387g01003.1	AT4G12490.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=182	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf01774g02018.1			Unknown protein		
Niben101Scf01677g06001.1	sp|P27491|CB27_TOBAC	***-	Chlorophyll a-b binding protein 7, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf04350g00002.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03978g06001.1	sp|Q9VLT1|MON2_DROME	***-	Protein MON2 homolog	IPR016024 (Armadillo-type fold), IPR026829 (Monensin-resistant homologue 2)	GO:0005488 (binding), GO:0015031 (protein transport)
Niben101Scf00077g08026.1	AT2G18570.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=470	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03817g03027.1			Unknown protein		
Niben101Scf01036g05013.1	sp|Q5M786|WDR5_XENTR	*-*-	WD repeat-containing protein 5	IPR011009 (Protein kinase-like domain), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00485g02023.1	sp|P44933|KEFX_HAEIN	*-*-	Glutathione-regulated potassium-efflux system protein	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02456g00015.1	sp|Q9SIY8|LAC5_ARATH	***-	Laccase-5	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02240g03013.1	sp|Q19VC6|PSBC_CHLAT	*-**	Photosystem II CP43 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf02015g03002.1			Unknown protein		
Niben101Scf02665g15001.1	AT2G38610.1	****	RNA-binding KH domain-containing protein LENGTH=286	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf04410g09001.1	sp|Q9YFQ8|HELS_AERPE	*-**	ATP-dependent DNA helicase Hel308	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf00914g04017.1	sp|Q9ZPX1|ARF5_ARATH	*-*-	ADP-ribosylation factor-like protein 2	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf15092g00003.1	sp|P31687|4CL2_SOYBN	***-	4-coumarate--CoA ligase 2	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01739g01018.1	AT1G18160.1	*-**	Protein kinase superfamily protein LENGTH=992	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04867g00001.1	AT2G29060.1	***-	GRAS family transcription factor LENGTH=694	IPR005202 (Transcription factor GRAS)	
Niben101Scf01400g00003.1	sp|P81370|TLP_ACTDE	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf00148g01009.1	sp|Q9CAC1|GUN8_ARATH	***-	Endoglucanase 8	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02030g00004.1	ref|XP_007031332.1|	--*-	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao] gb|EOY02258.1| Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf01897g05020.1	sp|Q8RXQ1|TBL35_ARATH	***-	Protein trichome birefringence-like 35	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf15364g00004.1	sp|Q94DM8|UFM1_ORYSJ	***-	Ubiquitin-fold modifier 1	IPR005375 (Ubiquitin-fold modifier 1), IPR029071 (Ubiquitin-related domain)	
Niben101Scf24486g00008.1	sp|Q8RXK6|RH8_ARATH	*-*-	DEAD-box ATP-dependent RNA helicase 8		
Niben101Scf05142g00023.1	sp|P82129|RR7_SPIOL	*-*-	30S ribosomal protein S7, chloroplastic	IPR000235 (Ribosomal protein S5/S7), IPR023798 (Ribosomal protein S7 domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0006412 (translation)
Niben101Scf17276g01001.1	sp|Q9W7R3|TEN4_DANRE	--*-	Teneurin-4		
Niben101Scf03479g02014.1	sp|Q9FMZ4|Y5270_ARATH	--*-	B3 domain-containing protein	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf05896g00013.1	sp|Q9C8W3|FUT13_ARATH	****	Alpha-(1,4)-fucosyltransferase	IPR001503 (Glycosyl transferase, family 10)	GO:0006486 (protein glycosylation), GO:0008417 (fucosyltransferase activity), GO:0016020 (membrane)
Niben101Scf00474g13003.1	sp|Q8IXM3|RM41_HUMAN	*-*-	39S ribosomal protein L41, mitochondrial	IPR019189 (Ribosomal protein L27/L41, mitochondrial)	
Niben101Scf00646g09028.1	AT5G43050.1	***-	Protein of unknown function (DUF565) LENGTH=158	IPR007572 (Uncharacterised protein family Ycf20)	
Niben101Scf04292g10001.1	gb|AID55064.1|	***-	disease resistance protein, partial [Solanum habrochaites]	IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR003591 (Leucine-rich repeat, typical subtype), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0043531 (ADP binding)
Niben101Scf03424g00011.1	sp|Q84JG2|SWI3B_ARATH	***-	SWI/SNF complex subunit SWI3B	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf12686g01013.1	sp|P21187|PABP_DROME	*-**	Polyadenylate-binding protein	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf08643g06001.1	sp|Q9SAC4|FB2_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf07563g00011.1	gb|ADM75417.1|	***-	late embryogenesis abundant-like protein, partial [Picea sitchensis]	IPR009646 (Root cap)	
Niben101Scf00068g00012.1	dbj|BAD99417.1|	****	acyl-transferase [Capsicum annuum]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf10918g00006.1	ref|XP_002869579.1|	****	rab GTPase activator [Arabidopsis lyrata subsp. lyrata] gb|EFH45838.1| rab GTPase activator [Arabidopsis lyrata subsp. lyrata]	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf07690g00014.1	AT5G01550.1	****	lectin receptor kinase a4.1 LENGTH=688	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf08894g01008.1	AT1G07710.1	***-	Ankyrin repeat family protein LENGTH=543	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf02446g00025.1	sp|Q8RBI7|DAPH_CALS4	***-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	IPR011004 (Trimeric LpxA-like)	
Niben101Scf13549g00018.1	sp|Q56XP4|NHX2_ARATH	****	Sodium/hydrogen exchanger 2	IPR006153 (Cation/H+ exchanger), IPR018422 (Cation/H+ exchanger, CPA1 family)	GO:0005774 (vacuolar membrane), GO:0005886 (plasma membrane), GO:0006812 (cation transport), GO:0006814 (sodium ion transport), GO:0006885 (regulation of pH), GO:0009651 (response to salt stress), GO:0015299 (solute:proton antiporter activity), GO:0015385 (sodium:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055075 (potassium ion homeostasis), GO:0055085 (transmembrane transport)
Niben101Scf02914g00004.1	gb|KEH34780.1|	--*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf03050g04002.1	sp|P42743|UBC15_ARATH	***-	Ubiquitin-conjugating enzyme 15	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf02460g01004.1	AT2G05940.1	****	Protein kinase superfamily protein LENGTH=462	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05323g02009.1	emb|CDX99715.1|	*-*-	BnaC02g36050D [Brassica napus]		
Niben101Scf10224g01005.1	sp|Q8LPL6|AP2A1_ARATH	****	AP-2 complex subunit alpha-1	IPR009028 (Coatomer/calthrin adaptor appendage, C-terminal subdomain), IPR013041 (Coatomer/clathrin adaptor appendage, Ig-like subdomain), IPR016024 (Armadillo-type fold), IPR017104 (Adaptor protein complex AP-2, alpha subunit)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030131 (clathrin adaptor complex)
Niben101Scf03486g01008.1	emb|CDX94117.1|	*-*-	BnaC07g37510D [Brassica napus]		
Niben101Scf00543g02008.1	AT1G69980.1	***-	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=205		
Niben101Scf10579g01025.1	AT1G10530.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=166	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf04114g00049.1	sp|Q5FGW5|NUOH_EHRRG	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf01143g07001.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03694g01002.1	AT1G61720.1	****	NAD(P)-binding Rossmann-fold superfamily protein LENGTH=340	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf02479g03007.1	ref|XP_002535202.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF27181.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01785g07001.1	sp|Q9SI37|WRKY1_ARATH	--**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02893g01003.1	sp|Q12BW0|ILVD_POLSJ	***-	Dihydroxy-acid dehydratase	IPR000581 (Dihydroxy-acid/6-phosphogluconate dehydratase), IPR015928 (Aconitase/3-isopropylmalate dehydratase, swivel)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04754g02001.1	ref|XP_007048823.1|	*-*-	BED zinc finger,hAT family dimerization domain [Theobroma cacao] gb|EOX92980.1| BED zinc finger,hAT family dimerization domain [Theobroma cacao]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf01950g02001.1	sp|Q6YZE8|SPL16_ORYSJ	****	Squamosa promoter-binding-like protein 16	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf01977g00001.1	sp|Q9SHB5|WRK55_ARATH	*-**	WRKY transcription factor 55	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03864g01015.1	sp|Q72MG4|IPYR_LEPIC	****	Inorganic pyrophosphatase	IPR008162 (Inorganic pyrophosphatase)	GO:0000287 (magnesium ion binding), GO:0004427 (inorganic diphosphatase activity), GO:0005737 (cytoplasm), GO:0006796 (phosphate-containing compound metabolic process)
Niben101Scf00244g03007.1	AT4G26540.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1091	IPR001611 (Leucine-rich repeat), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf02907g07009.1	AT5G65590.1	****	Dof-type zinc finger DNA-binding family protein LENGTH=316	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08128g00007.1			Unknown protein		
Niben101Scf01386g02004.1	sp|B5ZS68|DXS_RHILW	****	1-deoxy-D-xylulose-5-phosphate synthase	IPR005477 (Deoxyxylulose-5-phosphate synthase), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0008661 (1-deoxy-D-xylulose-5-phosphate synthase activity), GO:0016114 (terpenoid biosynthetic process)
Niben101Scf02207g04005.1	AT1G23780.1	***-	F-box family protein LENGTH=475	IPR001810 (F-box domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf01936g05003.1	gb|KEH35305.1|	***-	C2 domain protein [Medicago truncatula]		
Niben101Scf11037g01010.1	emb|CDY17988.1|	***-	BnaC03g30600D [Brassica napus]		
Niben101Scf02918g00003.1	sp|Q43792|ACCO_TOBAC	***-	1-aminocyclopropane-1-carboxylate oxidase	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Ctg14074g00003.1	sp|Q6ZQF0|TOPB1_MOUSE	*-*-	DNA topoisomerase 2-binding protein 1	IPR001357 (BRCT domain)	
Niben101Scf04173g02003.1	ref|XP_002517845.1|	****	nucleic acid binding protein, putative [Ricinus communis] gb|EEF44363.1| nucleic acid binding protein, putative [Ricinus communis]	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding)
Niben101Scf01848g05003.1	AT5G11950.1	***-	Putative lysine decarboxylase family protein LENGTH=216	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf04875g03010.1	sp|B2VPR8|AL11B_OLEEU	*-**	Pectinesterase 2	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf03064g02018.1	sp|B0ULK6|NUOC_METS4	*-**	NADH-quinone oxidoreductase subunit C	IPR001268 (NADH:ubiquinone oxidoreductase, 30kDa subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04432g02003.1	sp|Q7NBW0|DNAJ_MYCGA	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf06525g01002.1	sp|P46629|RAB25_RABIT	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf14877g01013.1	ref|XP_002873142.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH49401.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf04028g01002.1	sp|O82199|C3H20_ARATH	***-	Zinc finger CCCH domain-containing protein 20	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf08757g00007.1	sp|Q9SNB4|PCL1_ARATH	***-	Transcription factor LUX	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01545g01008.1	AT2G25605.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 75 Blast hits to 75 proteins in 20 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). LENGTH=200		
Niben101Scf16939g00005.1	sp|Q10251|IF2P_SCHPO	--*-	Eukaryotic translation initiation factor 5B		
Niben101Scf00383g04026.1	sp|Q9FFG8|PP417_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Ctg13827g00003.1	sp|Q07878|VPS13_YEAST	--*-	Vacuolar protein sorting-associated protein 13	IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf00414g05002.1	sp|Q9EXP1|SUFE_DICD3	*-*-	Cysteine desulfuration protein SufE	IPR002634 (BolA protein), IPR003808 (Fe-S metabolism associated domain, SufE-like)	
Niben101Scf03882g06003.1	ref|XP_007029708.1|	***-	Intracellular protein transport protein USO1 isoform 2 [Theobroma cacao] gb|EOY10210.1| Intracellular protein transport protein USO1 isoform 2 [Theobroma cacao]		
Niben101Scf05060g01009.1	AT5G39820.1	***-	NAC domain containing protein 94 LENGTH=337	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02507g04003.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf09706g00013.1	sp|Q9SYS3|CRK40_ARATH	*-**	Cysteine-rich receptor-like protein kinase 40	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03952g02014.1	sp|O04004|NLTP6_AMBAR	***-	Non-specific lipid-transfer protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf04973g02006.1	sp|C8V212|BRO1_EMENI	***-	Vacuolar protein-sorting protein bro1	IPR004328 (BRO1 domain), IPR025304 (ALIX V-shaped domain)	GO:0005515 (protein binding)
Niben101Scf03202g13010.1	sp|P93028|UBE11_ARATH	****	Ubiquitin-activating enzyme E1 1	IPR000011 (Ubiquitin/SUMO-activating enzyme E1), IPR018965 (Ubiquitin-activating enzyme e1, C-terminal), IPR023280 (Ubiquitin-like 1 activating enzyme, catalytic cysteine domain)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0006464 (cellular protein modification process), GO:0008641 (small protein activating enzyme activity)
Niben101Scf00920g00016.1	sp|O48850|VA725_ARATH	****	Vesicle-associated membrane protein 725	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Ctg13312g00004.1	sp|Q9FUY2|LEUNG_ARATH	--*-	Transcriptional corepressor LEUNIG		
Niben101Scf16389g00003.1	sp|Q4L5T5|RNC_STAHJ	*-**	Ribonuclease 3	IPR000999 (Ribonuclease III domain), IPR014720 (Double-stranded RNA-binding domain)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0006396 (RNA processing)
Niben101Scf06556g11019.1	sp|Q42920|PME_MEDSA	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf00415g01005.1	sp|P10967|ACCH3_SOLLC	***-	1-aminocyclopropane-1-carboxylate oxidase homolog	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf06359g00012.1	AT3G46460.1	***-	ubiquitin-conjugating enzyme 13 LENGTH=166	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf05867g02007.1	ref|WP_026796933.1|	--*-	MULTISPECIES: hypothetical protein [Planktothrix]		
Niben101Scf06932g00021.1	ref|WP_031681284.1|	--*-	PPE family protein [Mycobacterium tuberculosis]		
Niben101Scf04537g01011.1	gb|KEH18748.1|	***-	intracellular protein transporter USO1-like protein, putative [Medicago truncatula]		
Niben101Scf01887g03001.1	gb|KEH27535.1|	***-	transcription factor [Medicago truncatula]	IPR006869 (Domain of unknown function DUF547), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	
Niben101Scf13168g00007.1	sp|P14232|TGA1A_TOBAC	****	TGACG-sequence-specific DNA-binding protein TGA-1A	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02513g11001.1	sp|Q8VCK5|KLH20_MOUSE	*-*-	Kelch-like protein 20	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Ctg15751g00004.1	ref|NP_001078070.1|	***-	protein TILLER ANGLE CONTROL 1 [Arabidopsis thaliana] gb|AEC10733.1| uncharacterized protein [Arabidopsis thaliana]		
Niben101Scf08127g10002.1	sp|Q43820|DCAM_PEA	--**	S-adenosylmethionine decarboxylase proenzyme	IPR001985 (S-adenosylmethionine decarboxylase), IPR016067 (S-adenosylmethionine decarboxylase, core)	GO:0004014 (adenosylmethionine decarboxylase activity), GO:0006597 (spermine biosynthetic process), GO:0008295 (spermidine biosynthetic process)
Niben101Scf01958g05012.1	sp|Q9FHT4|TMN4_ARATH	*-*-	Transmembrane 9 superfamily member 4	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf02538g02001.1	sp|Q08BT5|K1468_XENTR	*-*-	LisH domain and HEAT repeat-containing protein KIAA1468 homolog	IPR006594 (LisH dimerisation motif), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf03735g05001.1			Unknown protein		
Niben101Scf00961g02008.1	emb|CDY71261.1|	*-*-	BnaCnng72080D, partial [Brassica napus]		
Niben101Scf04549g09017.1	sp|Q96SK2|TM209_HUMAN	*-*-	Transmembrane protein 209	IPR019176 (Cytochrome B561-related)	
Niben101Scf01182g03006.1	sp|Q9SDS7|VATC_ARATH	*-**	V-type proton ATPase subunit C	IPR004907 (ATPase, V1 complex, subunit C)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033180 (proton-transporting V-type ATPase, V1 domain)
Niben101Scf00700g00007.1	AT4G20170.1	***-	Domain of unknown function (DUF23) LENGTH=504	IPR008166 (Domain of unknown function DUF23)	
Niben101Scf04905g06004.1	sp|Q556Y9|MD2L1_DICDI	****	Mitotic spindle assembly checkpoint protein MAD2A	IPR003511 (DNA-binding HORMA), IPR027097 (Mitotic spindle checkpoint protein Mad2)	GO:0007094 (mitotic spindle assembly checkpoint)
Niben101Scf05087g04001.1	AT5G07990.1	*-*-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04874g00011.1	sp|Q9LQ81|ADF10_ARATH	*-**	Actin-depolymerizing factor 10	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf03375g02028.1	AT2G30390.2	****	ferrochelatase 2 LENGTH=522	IPR001015 (Ferrochelatase), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0004325 (ferrochelatase activity), GO:0006783 (heme biosynthetic process)
Niben101Scf00091g01025.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07744g00017.1	sp|B1ZA43|NUOD_METPB	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf28650g00016.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]		
Niben101Scf04216g05005.1	sp|Q3ZZN3|AROE_DEHMC	****	Shikimate dehydrogenase	IPR013785 (Aldolase-type TIM barrel), IPR016040 (NAD(P)-binding domain), IPR022893 (Shikimate, quinate/shikimate dehydrogenase)	GO:0003824 (catalytic activity), GO:0003855 (3-dehydroquinate dehydratase activity), GO:0004764 (shikimate 3-dehydrogenase (NADP+) activity), GO:0019632 (shikimate metabolic process), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00312g03005.1	AT1G68750.1	****	phosphoenolpyruvate carboxylase 4 LENGTH=1032	IPR021135 (Phosphoenolpyruvate carboxylase)	GO:0003824 (catalytic activity), GO:0006099 (tricarboxylic acid cycle), GO:0008964 (phosphoenolpyruvate carboxylase activity), GO:0015977 (carbon fixation)
Niben101Scf06318g01003.1	sp|O65020|ETO1_ARATH	***-	Ethylene-overproduction protein 1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04700g06001.1			Unknown protein		
Niben101Scf02756g00013.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03738g00015.1	AT5G05830.1	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=204	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf09696g01105.1	ref|WP_020370432.1|	--*-	MULTISPECIES: chorismate synthase [Chlamydia] gb|EPP34546.1| chorismate synthase [Chlamydia psittaci 10_1398_11] gb|EQM62377.1| chorismate synthase [Chlamydia ibidis 10-1398/6]		
Niben101Scf04044g03011.1	sp|Q9ZT48|ATE1_ARATH	****	Arginyl-tRNA--protein transferase 1	IPR016181 (Acyl-CoA N-acyltransferase), IPR017137 (Arginine-tRNA-protein transferase 1, eukaryotic)	GO:0004057 (arginyltransferase activity), GO:0016598 (protein arginylation)
Niben101Scf16337g00003.1	AT2G07785.1	*-*-	NADH dehydrogenase family protein LENGTH=99	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf00879g10006.1	AT4G03415.1	***-	Protein phosphatase 2C family protein LENGTH=468	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf22800g00010.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf13839g00004.1	ref|XP_007009995.1|	--*-	Ribonuclease H-like protein [Theobroma cacao] gb|EOY18805.1| Ribonuclease H-like protein [Theobroma cacao]		
Niben101Scf03273g03023.1	sp|Q15415|RBY1F_HUMAN	*-**	RNA-binding motif protein, Y chromosome, family 1 member F/J	IPR000061 (SWAP/Surp), IPR006569 (CID domain), IPR008942 (ENTH/VHS), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR013170 (mRNA splicing factor, Cwf21)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0006396 (RNA processing)
Niben101Scf05306g04010.1	sp|Q6ZSG1|RN165_HUMAN	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02074g07075.1			Unknown protein		
Niben101Scf03809g00009.1	ref|NP_001189828.1|	*-*-	U3snoRNP10 and NUC211 domain-containing protein [Arabidopsis thaliana] gb|AEE74408.1| U3snoRNP10 and NUC211 domain-containing protein [Arabidopsis thaliana]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00318g00012.1	sp|O80877|EF4L1_ARATH	***-	Protein ELF4-LIKE 1	IPR009741 (Protein of unknown function DUF1313)	
Niben101Scf00973g01015.1	gb|AES94605.2|	*-*-	eukaryotic aspartyl protease family protein [Medicago truncatula]	IPR021109 (Aspartic peptidase domain)	
Niben101Scf14562g00005.1	sp|Q852A1|EXPA7_ORYSJ	*-*-	Expansin-A7	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf13540g02008.1	AT1G73160.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=486		
Niben101Scf03990g01006.1	sp|Q8S8T8|PCR10_ARATH	***-	Protein PLANT CADMIUM RESISTANCE 10	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf02915g06006.1	emb|CBM56257.1|	*-*-	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	
Niben101Scf00742g01035.1	AT1G61215.1	***-	bromodomain 4 LENGTH=475	IPR001487 (Bromodomain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf02831g01009.1			Unknown protein		
Niben101Scf01418g03017.1	ref|XP_002515517.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF46966.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00690g03002.1	emb|CCF44831.1|	-**-	NADH:ubiquinone oxidoreductase 11.6kD subunit [Colletotrichum higginsianum]	IPR019329 (NADH:ubiquinone oxidoreductase, ESSS subunit)	
Niben101Scf08590g03014.1	emb|CAG26908.1|	***-	impaired sucrose induction 1-like protein [Medicago truncatula]	IPR012535 (Cell division protein Cdc14), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01739g05003.1	AT2G35010.1	***-	thioredoxin O1 LENGTH=194	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01817g02005.1	AT3G17840.1	****	receptor-like kinase 902 LENGTH=647	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07778g03012.1	sp|Q9SAC4|FB2_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf09704g02001.1	sp|Q40477|ERF4_TOBAC	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02982g01007.1	sp|Q6IQ97|RBM41_DANRE	--**	RNA-binding protein 4.1	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR013783 (Immunoglobulin-like fold), IPR014756 (Immunoglobulin E-set)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf07635g00008.1	sp|Q6J9S1|RA211_ARATH	*-*-	Ethylene-responsive transcription factor RAP2-11		
Niben101Scf10101g00002.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06189g04014.1	sp|Q9NPJ3|ACO13_HUMAN	***-	Acyl-coenzyme A thioesterase 13	IPR029069 (HotDog domain)	
Niben101Scf02408g00014.1	AT2G14510.1	***-	Leucine-rich repeat protein kinase family protein LENGTH=868	IPR001611 (Leucine-rich repeat), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0005515 (protein binding)
Niben101Scf31181g00011.1	sp|Q93ZR6|WSD1_ARATH	****	O-acyltransferase WSD1	IPR004255 (O-acyltransferase, WSD1, N-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity), GO:0045017 (glycerolipid biosynthetic process)
Niben101Scf06896g01006.1	sp|P12496|GAG_SIVS4	--*-	Gag polyprotein	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf37383g00004.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02738g01010.1	sp|Q6NKX1|PROD2_ARATH	****	Proline dehydrogenase 2, mitochondrial	IPR015659 (Proline oxidase), IPR029041 (FAD-linked oxidoreductase-like)	GO:0004657 (proline dehydrogenase activity), GO:0006562 (proline catabolic process)
Niben101Scf01942g05028.1	AT5G14860.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=492	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04327g02021.1	gb|ACM43526.1|	*-*-	phosphatidylinositol-specific phospholipase c [Listeria monocytogenes]	IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain)	GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Scf01784g00009.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY), IPR018872 (Zn-cluster domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf12428g00001.1			Unknown protein		
Niben101Scf00788g02013.1	AT2G43840.2	***-	UDP-glycosyltransferase 74 F1 LENGTH=449	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03851g01010.1	sp|Q9LFT0|TBL19_ARATH	*-*-	Protein trichome birefringence-like 19	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf04371g01001.1	sp|O65351|SUBL_ARATH	--*-	Subtilisin-like protease		
Niben101Scf00487g06013.1	sp|B3EWI4|PST2_PETHY	***-	Photosystem II 5 kDa protein, chloroplastic		
Niben101Scf14708g00005.1	sp|Q89AR5|THRC_BUCBP	--*-	Threonine synthase		
Niben101Scf10388g02019.1			Unknown protein		
Niben101Scf01818g09018.1	gb|KEH21484.1|	***-	heparan-alpha-glucosaminide N-acetyltransferase-like protein [Medicago truncatula]	IPR012429 (Protein of unknown function DUF1624)	
Niben101Scf08937g00004.1	sp|Q9Z8J2|TLC1_CHLPN	****	ADP,ATP carrier protein 1	IPR004667 (ADP/ATP carrier protein)	GO:0005471 (ATP:ADP antiporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf05449g00003.1	sp|Q9LTS3|CKX3_ARATH	****	Cytokinin dehydrogenase 3	IPR016164 (FAD-linked oxidase-like, C-terminal), IPR016166 (FAD-binding, type 2), IPR016170 (Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0009690 (cytokinin metabolic process), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0019139 (cytokinin dehydrogenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00927g03011.1	ref|NP_001173127.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAH91856.1| [Oryza sativa Japonica Group]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf03786g03003.1	sp|Q2RJU5|NUOC_MOOTA	****	NADH-quinone oxidoreductase subunit C	IPR001268 (NADH:ubiquinone oxidoreductase, 30kDa subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0055114 (oxidation-reduction process)
Niben101Scf08504g03011.1	sp|P23432|E13C_TOBAC	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01327g01014.1	sp|Q56YN8|SMC3_ARATH	*-*-	Structural maintenance of chromosomes protein 3		
Niben101Scf18652g00025.1			Unknown protein		
Niben101Scf04117g06008.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08535g04003.1	sp|F1LZ52|KLHL3_RAT	*-*-	Kelch-like protein 3	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf23113g00012.1	sp|O65333|CFI_ELAUM	*-**	Chalcone--flavonone isomerase	IPR016087 (Chalcone isomerase)	GO:0009813 (flavonoid biosynthetic process), GO:0016872 (intramolecular lyase activity), GO:0045430 (chalcone isomerase activity)
Niben101Scf01866g01028.1	sp|Q9LQQ1|PPR20_ARATH	*-*-	Pentatricopeptide repeat-containing protein At1g07740, mitochondrial		
Niben101Scf02387g00019.1	sp|Q9FIA1|GDL87_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04183g00005.1	AT4G00340.1	****	receptor-like protein kinase 4 LENGTH=818	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf13762g01031.1	emb|CDY29265.1|	***-	BnaC01g19170D [Brassica napus]		
Niben101Scf03284g00002.1	AT1G65790.1	*-**	receptor kinase 1 LENGTH=843	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00597g00011.1	gb|KEH16265.1|	*-*-	NBS-LRR type disease resistance protein [Medicago truncatula]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01124g23002.1			Unknown protein		
Niben101Scf00567g04008.1	emb|CDY11048.1|	*-*-	BnaA03g47070D [Brassica napus]		
Niben101Scf09590g02003.1	AT2G47410.1	*-*-	WD40/YVTN repeat-like-containing domain;Bromodomain LENGTH=1520	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04019g07018.1	sp|Q94AH6|CUL1_ARATH	****	Cullin-1	IPR001373 (Cullin, N-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf01463g03001.1	gb|AES98434.2|	*-*-	vacuolar iron transporter-like protein [Medicago truncatula]		
Niben101Scf09516g00022.1	sp|Q9FQ09|KU80_ARATH	****	ATP-dependent DNA helicase 2 subunit KU80	IPR002035 (von Willebrand factor, type A), IPR005161 (Ku70/Ku80, N-terminal alpha/beta), IPR014893 (Ku, C-terminal), IPR016194 (SPOC like C-terminal domain), IPR024193 (Ku80)	GO:0000723 (telomere maintenance), GO:0003677 (DNA binding), GO:0003684 (damaged DNA binding), GO:0004003 (ATP-dependent DNA helicase activity), GO:0005634 (nucleus), GO:0006303 (double-strand break repair via nonhomologous end joining), GO:0006310 (DNA recombination), GO:0016817 (hydrolase activity, acting on acid anhydrides), GO:0042162 (telomeric DNA binding), GO:0043564 (Ku70:Ku80 complex)
Niben101Scf09172g01011.1	sp|B4STN3|SYH_STRM5	***-	Histidine--tRNA ligase	IPR001106 (Aromatic amino acid lyase), IPR004516 (Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit), IPR008948 (L-Aspartase-like)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf06394g07002.1	sp|Q6D5W6|MDTK_PECAS	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf06864g00008.1			Unknown protein		
Niben101Scf03376g04010.1	sp|Q9D819|IPYR_MOUSE	****	Inorganic pyrophosphatase	IPR008162 (Inorganic pyrophosphatase)	GO:0000287 (magnesium ion binding), GO:0004427 (inorganic diphosphatase activity), GO:0005737 (cytoplasm), GO:0006796 (phosphate-containing compound metabolic process)
Niben101Scf09510g00008.1	ref|XP_007049488.1|	***-	Homeodomain-like transcriptional regulator isoform 2 [Theobroma cacao] gb|EOX93645.1| Homeodomain-like transcriptional regulator isoform 2 [Theobroma cacao]	IPR018501 (DDT domain superfamily)	
Niben101Scf00062g01019.1	sp|Q96CK0|ZN653_HUMAN	--**	Zinc finger protein 653	IPR003604 (Zinc finger, U1-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf00109g10012.1	sp|Q7ZZ00|ZN511_DANRE	***-	Zinc finger protein 511	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf04287g04013.1	sp|Q8L5Y9|PANK2_ARATH	****	Pantothenate kinase 2	IPR004567 (Type II pantothenate kinase)	GO:0004594 (pantothenate kinase activity), GO:0005524 (ATP binding), GO:0015937 (coenzyme A biosynthetic process)
Niben101Scf26762g00006.1	AT1G15760.1	*-*-	Sterile alpha motif (SAM) domain-containing protein LENGTH=202		
Niben101Scf03169g04007.1	AT5G46070.1	****	Guanylate-binding family protein LENGTH=1082	IPR003191 (Guanylate-binding protein, C-terminal), IPR015894 (Guanylate-binding protein, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf01300g00010.1	AT3G48140.1	***-	B12D protein LENGTH=88	IPR010530 (NADH-ubiquinone reductase complex 1 MLRQ subunit)	
Niben101Scf03080g02012.1	AT1G49520.1	***-	SWIB complex BAF60b domain-containing protein LENGTH=372	IPR003121 (SWIB/MDM2 domain), IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding), GO:0005515 (protein binding)
Niben101Scf00199g02009.1	sp|A5PK19|MET13_BOVIN	*-**	Methyltransferase-like protein 13	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf10196g01002.1	sp|O80831|BAM7_ARATH	*-*-	Beta-amylase 7	IPR008540 (BZR1, transcriptional repressor)	
Niben101Scf05822g01006.1	AT2G07739.1	***-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf32851g00038.1	ref|XP_002501636.1|	*-**	bZIP DNA-binding transcription factor [Micromonas sp. RCC299] gb|ACO62894.1| bZIP DNA-binding transcription factor [Micromonas sp. RCC299]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf19007g00001.1	sp|Q9FLJ4|PP440_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02798g02018.1			Unknown protein		
Niben101Scf00220g03014.1	sp|Q9M812|CUT1C_ARATH	***-	Protein CURVATURE THYLAKOID 1C, chloroplastic	IPR025564 (Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain)	
Niben101Scf00571g06008.1			Unknown protein		
Niben101Scf07937g03002.1	sp|P28049|LAB_XENLA	*-*-	Lupus La protein homolog B	IPR006607 (Protein of unknown function DM15), IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf00454g01003.1	AT5G51220.1	*-*-	ubiquinol-cytochrome C chaperone family protein LENGTH=281	IPR021150 (Ubiquinol-cytochrome c chaperone/UPF0174)	
Niben101Scf03867g00016.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf15671g00001.1	sp|O61125|STK4_DICDI	****	Serine/threonine-protein kinase 4 homolog A	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05584g00002.1	gb|EEQ87690.1|	--*-	conserved hypothetical protein [Ajellomyces dermatitidis ER-3]		
Niben101Scf01012g01005.1			Unknown protein		
Niben101Scf03076g01023.1	ref|WP_017313579.1|	***-	ParB domain-containing protein nuclease [Fischerella sp. PCC 9339]	IPR016692 (Sulfiredoxin)	GO:0032542 (sulfiredoxin activity), GO:0055114 (oxidation-reduction process)
Niben101Scf13057g00011.1	AT3G27090.1	***-	DCD (Development and Cell Death) domain protein LENGTH=296	IPR013989 (Development/cell death domain)	
Niben101Scf03820g00007.1	sp|Q55EJ3|NAT10_DICDI	****	N-acetyltransferase 10 homolog	IPR000182 (GNAT domain), IPR007807 (Helicase domain), IPR013562 (Domain of unknown function DUF1726)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf07383g10004.1	sp|Q55FS3|APH1_DICDI	--*-	Gamma-secretase subunit Aph-1	IPR009294 (Gamma-secretase subunit Aph-1)	GO:0016021 (integral component of membrane), GO:0016485 (protein processing), GO:0043085 (positive regulation of catalytic activity)
Niben101Scf00128g03005.1	ref|XP_002517439.1|	--*-	serine/threonine protein kinase, putative [Ricinus communis] gb|EEF44981.1| serine/threonine protein kinase, putative [Ricinus communis]		
Niben101Scf07391g00013.1	sp|Q9CAN3|SCL28_ARATH	*-*-	Scarecrow-like protein 28	IPR005202 (Transcription factor GRAS), IPR030027 (Scarecrow-like protein 28)	
Niben101Scf05032g00006.1	sp|Q9TVU5|RAB1_THEPA	***-	Ras-related protein Rab-1	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf16022g01019.1	ref|YP_006291827.1|	*-*-	orf43 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81181.1| orf43 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf02155g01001.1	sp|Q9SW33|TL1Y_ARATH	*-*-	Thylakoid lumenal 17.9 kDa protein, chloroplastic		
Niben101Scf10055g09007.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08522g02011.1	AT4G16340.1	****	guanyl-nucleotide exchange factors;GTPase binding;GTP binding LENGTH=1830	IPR010703 (Dedicator of cytokinesis C-terminal), IPR026791 (Dedicator of cytokinesis), IPR027357 (DHR-2 domain)	GO:0005085 (guanyl-nucleotide exchange factor activity), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf02232g03006.1	emb|CDY33463.1|	***-	BnaA06g36100D [Brassica napus]	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf13710g03006.1	gb|AAO86635.1|	***-	phantastica transcription factor [Fraxinus americana]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01937g00005.1	sp|Q1IWL4|DNAK_DEIGD	--*-	Chaperone protein DnaK	IPR008011 (Complex 1 LYR protein)	
Niben101Scf23814g00038.1	sp|P59259|H4_ARATH	*-*-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly), GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity)
Niben101Scf07027g04006.1	sp|Q9M060|IF62_ARATH	***-	Eukaryotic translation initiation factor 6-2	IPR002769 (Translation initiation factor IF6)	GO:0042256 (mature ribosome assembly), GO:0043022 (ribosome binding)
Niben101Scf31339g00004.1			Unknown protein		
Niben101Scf20551g00002.1	sp|A2C6X1|ATPL_PROM3	****	ATP synthase subunit c	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf13230g01007.1	ref|WP_020769919.1|	***-	PF09835 family protein [Lept [Leptospira sp. B5-022]		
Niben101Scf14805g04011.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00159g08018.1	sp|Q6GMD2|WDR61_XENLA	--*-	WD repeat-containing protein 61	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf08151g00003.1	gb|AFW65822.1|	***-	COV1 [Zea mays]	IPR007462 (Protein of unknown function DUF502)	
Niben101Scf03253g02007.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02026g00016.1			Unknown protein		
Niben101Scf02245g00005.1	sp|P11631|NU4M_ONCMY	*-*-	NADH-ubiquinone oxidoreductase chain 4	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf09169g01002.1	sp|Q2FT38|RL5_METHJ	***-	50S ribosomal protein L5	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01177g05009.1	sp|Q67BJ4|A4GAT_MOUSE	*-*-	Lactosylceramide 4-alpha-galactosyltransferase	IPR007577 (Glycosyltransferase, DXD sugar-binding motif), IPR007652 (Alpha 1,4-glycosyltransferase domain), IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf10366g00016.1	gb|ABO80459.1|	--*-	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf03640g00006.1	ref|XP_002512046.1|	--**	nucleic acid binding protein, putative [Ricinus communis] gb|EEF50715.1| nucleic acid binding protein, putative [Ricinus communis]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Ctg08696g00001.1			Unknown protein		
Niben101Scf10064g00003.1	sp|P0A9H8|CFA_ECOL6	*-*-	Cyclopropane-fatty-acyl-phospholipid synthase	IPR003333 (Mycolic acid cyclopropane synthase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008610 (lipid biosynthetic process)
Niben101Scf04021g06009.1	emb|CDX89137.1|	--*-	BnaA04g00490D [Brassica napus]		
Niben101Scf08341g10005.1	AT3G24520.1	*-**	heat shock transcription factor C1 LENGTH=330	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05442g01001.1	AT2G37020.2	***-	Translin family protein LENGTH=310	IPR002848 (Translin)	GO:0043565 (sequence-specific DNA binding)
Niben101Scf01188g10001.1	gb|AGT39239.1|	--*-	black hull 4 [Oryza barthii]		
Niben101Scf02762g00004.1	AT5G64500.1	***-	Major facilitator superfamily protein LENGTH=484	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00995g02002.1			Unknown protein		
Niben101Scf01209g00003.1	sp|A2BPP8|LEPA_PROMS	*-*-	Elongation factor 4	IPR013842 (GTP-binding protein LepA, C-terminal)	
Niben101Ctg14076g00001.1	sp|Q96499|RL44_GOSHI	***-	60S ribosomal protein L44	IPR000552 (Ribosomal protein L44e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02615g01006.1	AT1G09890.1	***-	Rhamnogalacturonate lyase family protein LENGTH=617	IPR008979 (Galactose-binding domain-like), IPR010325 (Rhamnogalacturonate lyase), IPR011013 (Galactose mutarotase-like domain), IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf03732g02011.1	ref|XP_002531664.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF30708.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00360g03008.1	sp|Q7S6S4|TIM16_NEUCR	****	Mitochondrial import inner membrane translocase subunit tim16	IPR005341 (Mitochondrial import inner membrane translocase subunit Tim16), IPR008949 (Isoprenoid synthase domain)	GO:0005744 (mitochondrial inner membrane presequence translocase complex), GO:0030150 (protein import into mitochondrial matrix)
Niben101Scf00369g07016.1	sp|P0CB32|HS71L_BOVIN	***-	Heat shock 70 kDa protein 1-like	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf09822g01015.1	sp|P29388|NU5M_ARATH	--*-	NADH-ubiquinone oxidoreductase chain 5		
Niben101Scf34790g00003.1	sp|B9EYD3|PLA4_ORYSJ	*-*-	Phospholipase A1-II 4	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf05676g06016.1	sp|P02274|H2A1_TETPY	***-	Histone H2A.1	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf19261g00009.1	sp|Q9STX1|ACBP3_ARATH	*-**	Acyl-CoA-binding domain-containing protein 3	IPR014352 (FERM/acyl-CoA-binding protein, 3-helical bundle)	GO:0000062 (fatty-acyl-CoA binding)
Niben101Scf07648g01018.1	sp|Q9LJN2|MRS23_ARATH	****	Magnesium transporter MRS2-3	IPR002523 (Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB), IPR026573 (Magnesium transporter MRS2/LPE10)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf12483g02005.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf10412g02021.1	AT5G42680.1	***-	Protein of unknown function, DUF617 LENGTH=238	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf00085g03006.1	sp|Q9C5Q2|AI5L3_ARATH	--*-	ABSCISIC ACID-INSENSITIVE 5-like protein 3	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg10963g00003.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02525g04013.1	ref|XP_002883427.1|	*-**	nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH59686.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00922g01004.1	ref|WP_017630832.1|	****	membrane protein [Vibrio sp. 624788]	IPR000620 (EamA domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf02010g01011.1	sp|Q9NQW7|XPP1_HUMAN	***-	Xaa-Pro aminopeptidase 1	IPR000994 (Peptidase M24, structural domain), IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	GO:0016787 (hydrolase activity)
Niben101Scf05234g00001.1	emb|CDY53943.1|	***-	BnaA02g36930D [Brassica napus]		
Niben101Scf10900g00002.1	gb|KEH43439.1|	***-	XS domain protein [Medicago truncatula]	IPR005380 (XS domain)	GO:0031047 (gene silencing by RNA)
Niben101Scf15632g00025.1	sp|Q94AH6|CUL1_ARATH	****	Cullin-1	IPR001373 (Cullin, N-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf11319g00002.1	AT1G20460.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=106		
Niben101Scf00316g01005.1			Unknown protein		
Niben101Scf08293g01012.1	AT5G61620.1	***-	myb-like transcription factor family protein LENGTH=317	IPR001878 (Zinc finger, CCHC-type), IPR009057 (Homeodomain-like)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf03739g06009.1	gb|EMT19709.1|	--**	Transcription elongation factor A protein 2 [Aegilops tauschii]	IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf08388g00011.1	AT2G01275.1	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=259	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022143 (Protein of unknown function DUF3675)	GO:0008270 (zinc ion binding)
Niben101Scf18513g00008.1	AT3G17611.1	***-	RHOMBOID-like protein 14 LENGTH=334	IPR001876 (Zinc finger, RanBP2-type), IPR022764 (Peptidase S54, rhomboid domain)	GO:0004252 (serine-type endopeptidase activity), GO:0008270 (zinc ion binding), GO:0016021 (integral component of membrane)
Niben101Scf10328g00013.1	gb|AAV38418.1|	*-**	zinc finger protein 9 (a cellular retroviral nucleic acid binding protein) [synthetic construct] gb|AAX43243.1| zinc finger protein 9 [synthetic construct]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02853g02002.1	sp|Q58DZ6|ZN143_XENTR	*-*-	Zinc finger protein 143	IPR003347 (JmjC domain), IPR003349 (JmjN domain), IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf10015g00009.1	gb|KEH30116.1|	***-	CRAL/TRIO domain protein [Medicago truncatula]	IPR001251 (CRAL-TRIO domain)	
Niben101Scf01704g03009.1	emb|CDY23208.1|	*-*-	BnaA04g05510D [Brassica napus]		
Niben101Scf02074g04001.1			Unknown protein		
Niben101Scf14778g00021.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01502g00013.1	sp|Q9SMZ2|PP347_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf00878g03011.1	sp|Q7MZ92|FADB_PHOLL	*-*-	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR014748 (Crontonase, C-terminal), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03092g00003.1	AT5G10740.1	*-*-	Protein phosphatase 2C family protein LENGTH=354	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf03731g00007.1	sp|Q5RET6|T184C_PONAB	***-	Transmembrane protein 184C	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184)	
Niben101Scf08535g03012.1	gb|KEH32455.1|	***-	stress responsive A/B barrel domain protein [Medicago truncatula]	IPR011008 (Dimeric alpha-beta barrel)	
Niben101Scf12277g02010.1	sp|Q27RY7|YCF2_SOLTU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf06913g00006.1	AT3G06790.1	*-*-	plastid developmental protein DAG, putative LENGTH=244		
Niben101Scf08792g00009.1	sp|Q0WPS2|B561M_ARATH	***-	Cytochrome b561 domain-containing protein	IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf11169g00003.1	sp|Q3C1N4|YCF2_NICSY	--*-	Protein Ycf2		
Niben101Scf21895g00008.1	sp|A8GKU9|GLGX_SERP5	*-*-	Glycogen debranching enzyme	IPR013783 (Immunoglobulin-like fold), IPR014756 (Immunoglobulin E-set)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05102g00005.1	sp|Q0AHU1|RF1_NITEC	*-**	Peptide chain release factor 1	IPR000352 (Peptide chain release factor class I/class II), IPR014720 (Double-stranded RNA-binding domain)	GO:0003747 (translation release factor activity), GO:0006415 (translational termination)
Niben101Scf02818g00001.1			Unknown protein		
Niben101Scf06305g01003.1	AT3G62450.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=74		
Niben101Scf11110g00018.1	sp|P16273|PRPX_HORVU	***-	Pathogen-related protein		
Niben101Scf01638g00002.1	sp|Q9SRX1|Y1277_ARATH	--*-	UPF0725 protein		
Niben101Scf01319g03001.1	emb|CDY69985.1|	*-*-	BnaAnng32230D, partial [Brassica napus]		
Niben101Scf03856g03009.1	sp|Q83PH4|HEM3_SHIFL	***-	Porphobilinogen deaminase	IPR000860 (Tetrapyrrole biosynthesis, hydroxymethylbilane synthase)	GO:0004418 (hydroxymethylbilane synthase activity), GO:0018160 (peptidyl-pyrromethane cofactor linkage), GO:0033014 (tetrapyrrole biosynthetic process)
Niben101Scf02433g06014.1	gb|ADL37018.1|	***-	At1g62390-like protein [Arabidopsis lyrata subsp. lyrata]	IPR000270 (Phox/Bem1p), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02172g05003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR018392 (LysM domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg13136g00001.1	AT5G66110.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=147	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf07527g03011.1			Unknown protein		
Niben101Scf00230g01005.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR015757 (Calcineurin B protein)	GO:0005509 (calcium ion binding)
Niben101Scf06369g04002.1	sp|Q3UXZ9|KDM5A_MOUSE	*-*-	Lysine-specific demethylase 5A		
Niben101Scf00177g00007.1	sp|Q9M2W3|PGPS2_ARATH	****	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2	IPR000462 (CDP-alcohol phosphatidyltransferase)	GO:0008654 (phospholipid biosynthetic process), GO:0016020 (membrane), GO:0016780 (phosphotransferase activity, for other substituted phosphate groups)
Niben101Scf18654g00004.1	sp|A9W1N1|NUOC_METEP	*-**	NADH-quinone oxidoreductase subunit C	IPR001268 (NADH:ubiquinone oxidoreductase, 30kDa subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0055114 (oxidation-reduction process)
Niben101Scf14079g00003.1	sp|Q8SAG3|ADF_VITVI	****	Actin-depolymerizing factor	IPR015418 (Histone H4 acetyltransferase, NuA4 complex, Eaf6), IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf07405g02009.1	AT5G02460.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=399	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01697g05002.1	sp|Q39117|TGT2_ARATH	--*-	Trihelix transcription factor GT-2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf04754g02008.1	AT2G42850.1	*-*-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00942g00003.1	sp|P42327|ADH2_GEOSE	***-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08191g00005.1	gb|ABA95265.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]		
Niben101Scf08291g00004.1	gb|KEH44010.1|	--*-	MADS-box transcription factor family protein [Medicago truncatula]		
Niben101Scf02621g04026.1	AT4G35060.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=153	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf00777g05009.1	AT3G10770.1	*-**	Single-stranded nucleic acid binding R3H protein LENGTH=333	IPR001374 (Single-stranded nucleic acid binding R3H)	GO:0003676 (nucleic acid binding)
Niben101Scf01759g06001.1	AT1G07990.1	***-	SIT4 phosphatase-associated family protein LENGTH=802	IPR007587 (SIT4 phosphatase-associated protein family), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf03779g04011.1	sp|P59234|YIPL_SOLTU	*-*-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf01557g07004.1	AT3G44850.1	****	Protein kinase superfamily protein LENGTH=534	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03651g03001.1	sp|O22213|CKX1_ARATH	****	Cytokinin dehydrogenase 1	IPR016164 (FAD-linked oxidase-like, C-terminal), IPR016166 (FAD-binding, type 2), IPR016170 (Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0009690 (cytokinin metabolic process), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0019139 (cytokinin dehydrogenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06203g01010.1	sp|A8EZZ7|NUOI_RICCK	****	NADH-quinone oxidoreductase subunit I	IPR010226 (NADH-quinone oxidoreductase, chain I), IPR017896 (4Fe-4S ferredoxin-type, iron-sulphur binding domain)	GO:0016020 (membrane), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf22566g00019.1	AT4G27480.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=421	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf09153g05001.1	ref|XP_010109534.1|	*-*-	Histone-lysine N-methyltransferase [Morus notabilis] gb|EXC23138.1| Histone-lysine N-methyltransferase [Morus notabilis]		
Niben101Scf02538g05018.1	sp|B4EWN4|MDTK_PROMH	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00830g01001.1	ref|XP_007043499.1|	***-	Micronuclear linker histone polyprotein-like protein [Theobroma cacao] gb|EOX99330.1| Micronuclear linker histone polyprotein-like protein [Theobroma cacao]		
Niben101Scf07678g03010.1	sp|O48790|CCB14_ARATH	*-*-	Cyclin-B1-4	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf03551g01001.1	emb|CDX70647.1|	*-*-	BnaC03g07310D [Brassica napus]		
Niben101Scf05133g06012.1	gb|KEH19140.1|	--*-	F-box protein interaction domain protein [Medicago truncatula]		
Niben101Scf10015g05001.1	gb|EMT00230.1|	*-*-	Disease resistance protein RGA2 [Aegilops tauschii]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf28363g00013.1			Unknown protein		
Niben101Ctg13878g00002.1			Unknown protein		
Niben101Scf06461g06013.1			Unknown protein		
Niben101Scf00627g01003.1	sp|Q8D3K2|BETA_VIBVU	--*-	Oxygen-dependent choline dehydrogenase		
Niben101Scf08419g01021.1	sp|P24804|TA29_TOBAC	***-	Anther-specific protein TA-29		
Niben101Scf01990g00003.1	sp|Q9M153|GDL61_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf06737g00032.1	sp|Q76E23|IF4G_ARATH	--*-	Eukaryotic translation initiation factor 4G	IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02011g05002.1	sp|A8F9A1|RL18_BACP2	--*-	50S ribosomal protein L18	IPR005484 (Ribosomal protein L18/L5)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04931g01007.1			Unknown protein		
Niben101Scf09467g01008.1			Unknown protein		
Niben101Scf03643g09013.1	sp|O82631|CAPZA_ARATH	****	F-actin-capping protein subunit alpha	IPR002189 (F-actin-capping protein subunit alpha)	GO:0008290 (F-actin capping protein complex), GO:0051016 (barbed-end actin filament capping)
Niben101Scf00381g01014.1	AT2G34750.1	***-	RNA polymerase I specific transcription initiation factor RRN3 protein LENGTH=613	IPR007991 (RNA polymerase I specific transcription initiation factor RRN3)	
Niben101Scf04831g00018.1	sp|Q8K224|NAT10_MOUSE	--*-	N-acetyltransferase 10	IPR027992 (Possible tRNA binding domain)	
Niben101Scf00069g03002.1	sp|Q5JTN6|WDR38_HUMAN	***-	WD repeat-containing protein 38	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf05853g03005.1	sp|P22817|IDE_DROME	--*-	Insulin-degrading enzyme		
Niben101Scf01060g00001.1	sp|Q54DB1|CM2A2_DICDI	***-	Charged multivesicular body protein 2a homolog 2	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf10476g01016.1	AT5G46940.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=176	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf01938g06005.1	sp|P53795|HINT_CAEEL	***-	Histidine triad nucleotide-binding protein 1	IPR001310 (Histidine triad (HIT) protein), IPR011146 (HIT-like domain)	GO:0003824 (catalytic activity)
Niben101Scf02074g01058.1	ref|XP_003588355.1|	*-*-	Mitochondrial protein, putative [Medicago truncatula]		
Niben101Scf22578g00002.1	sp|C1F223|NUON2_ACIC5	*-*-	NADH-quinone oxidoreductase subunit N 2	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf13280g00006.1	sp|Q8NZW9|GLPK_STRP8	*-*-	Glycerol kinase	IPR006003 (Carbohydrate kinase, FGGY-related)	GO:0005975 (carbohydrate metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00911g03003.1	ref|XP_003626807.1|	--**	Pectinesterase inhibitor [Medicago truncatula] gb|AET01283.1| plant invertase/pectin methylesterase inhibitor [Medicago truncatula] gb|AFK39674.1| unknown [Medicago truncatula]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf08341g11004.1	AT5G19650.1	*-*-	ovate family protein 8 LENGTH=221	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf05226g06006.1	AT2G33620.1	*-**	AT hook motif DNA-binding family protein LENGTH=351	IPR005175 (Domain of unknown function DUF296), IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Scf03021g03051.1	sp|Q9FRI5|PPR57_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Ctg15721g00002.1	sp|O42877|FCF2_SCHPO	*-*-	rRNA-processing protein fcf2	IPR014810 (Fcf2 pre-rRNA processing)	
Niben101Scf00544g00004.1	sp|Q70Y03|PSAA_AMBTC	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf03978g06008.1	AT5G27970.2	*-*-	ARM repeat superfamily protein LENGTH=1658		
Niben101Scf05438g02004.1	AT2G27820.1	*-**	prephenate dehydratase 1 LENGTH=424	IPR001086 (Prephenate dehydratase), IPR002912 (ACT domain)	GO:0004664 (prephenate dehydratase activity), GO:0008152 (metabolic process), GO:0009094 (L-phenylalanine biosynthetic process), GO:0016597 (amino acid binding)
Niben101Scf01141g00004.1	AT1G72210.1	***-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=320	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf08635g03001.1	sp|C3KX35|MUTS_CLOB6	*-**	DNA mismatch repair protein MutS	IPR000432 (DNA mismatch repair protein MutS, C-terminal), IPR007696 (DNA mismatch repair protein MutS, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf02108g02015.1	sp|Q9C6V3|AGL86_ARATH	--*-	Agamous-like MADS-box protein AGL86	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03469g04002.1	sp|Q9FI80|PP425_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf04760g00011.1	AT1G18440.1	*-**	Peptidyl-tRNA hydrolase family protein LENGTH=288	IPR001328 (Peptidyl-tRNA hydrolase)	GO:0004045 (aminoacyl-tRNA hydrolase activity)
Niben101Scf01724g00017.1	sp|Q9M9V8|CDPKA_ARATH	*-**	Calcium-dependent protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01605g00005.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05294g00031.1	sp|Q5ZMW3|API5_CHICK	***-	Apoptosis inhibitor 5	IPR008383 (Apoptosis inhibitory 5)	
Niben101Scf01214g00003.1	sp|Q53FV1|ORML2_HUMAN	***-	ORM1-like protein 2	IPR007203 (ORMDL family)	GO:0005789 (endoplasmic reticulum membrane), GO:0016021 (integral component of membrane)
Niben101Scf00544g00005.1			Unknown protein		
Niben101Scf11560g00017.1	AT4G38520.1	****	Protein phosphatase 2C family protein LENGTH=400	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf36076g00002.1	sp|P68103|EF1A1_BOVIN	*-*-	Elongation factor 1-alpha 1	IPR000795 (Elongation factor, GTP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf05922g00005.1	sp|A2WWV5|ERG1_ORYSI	***-	Elicitor-responsive protein 1	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf16244g02015.1	sp|A8K979|ERI2_HUMAN	*-*-	ERI1 exoribonuclease 2	IPR010666 (Zinc finger, GRF-type), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity), GO:0008270 (zinc ion binding)
Niben101Scf00906g00005.1			Unknown protein		
Niben101Scf03923g14011.1	sp|C7AU21|D27_ORYSJ	***-	Beta-carotene isomerase D27, chloroplastic	IPR025114 (Domain of unknown function DUF4033)	
Niben101Scf07668g00013.1	AT3G07180.1	****	GPI transamidase component PIG-S-related LENGTH=599	IPR019540 (Phosphatidylinositol-glycan biosynthesis class S protein)	GO:0016255 (attachment of GPI anchor to protein), GO:0042765 (GPI-anchor transamidase complex)
Niben101Scf14662g01006.1	AT1G14920.1	****	GRAS family transcription factor family protein LENGTH=533	IPR005202 (Transcription factor GRAS), IPR030008 (Scarecrow-like protein 3)	GO:0000989 (transcription factor binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf08142g01002.1	ref|WP_015111244.1|	*-*-	single-stranded nucleic acid binding R3H domain-containing protein [N [Nostoc sp. PCC 7107]		
Niben101Scf13842g01001.1	sp|Q9LYN8|EXS_ARATH	***-	Leucine-rich repeat receptor protein kinase EXS	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf01812g01007.1	sp|Q9LUM6|FB157_ARATH	-**-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf08026g00008.1	AT4G17840.1	****	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;	IPR003675 (CAAX amino terminal protease)	GO:0016020 (membrane)
Niben101Scf04918g06003.1	sp|P12540|PKG1_ADE12	--*-	Packaging protein 1		
Niben101Scf05029g02027.1			Unknown protein		
Niben101Scf03038g04012.1	gb|AAC97933.1|	*-*-	disease resistance protein [Solanum lycopersicum]		
Niben101Scf03474g02002.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf01337g00001.1	sp|O49255|NAC29_ARATH	--**	NAC transcription factor 29	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00487g06012.1			Unknown protein		
Niben101Scf01759g04007.1	sp|Q8LC03|ATB13_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-13	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR013978 (MEKHLA), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf05025g04008.1	sp|Q8GWR1|AAAS_ARATH	***-	Aladin	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04334g04001.1	AT2G21220.1	***-	SAUR-like auxin-responsive protein family LENGTH=104	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf10132g00019.1	dbj|BAB02697.1|	*-*-	helicase-like protein [Arabidopsis thaliana]		
Niben101Scf03309g08026.1	gb|KEH20669.1|	***-	alpha/beta-hydrolase superfamily protein [Medicago truncatula]	IPR007751 (Domain of unknown function DUF676, lipase-like), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf08127g10003.1	sp|O80402|DCAM_NICSY	*-**	S-adenosylmethionine decarboxylase proenzyme	IPR001985 (S-adenosylmethionine decarboxylase), IPR016067 (S-adenosylmethionine decarboxylase, core)	GO:0004014 (adenosylmethionine decarboxylase activity), GO:0006597 (spermine biosynthetic process), GO:0008295 (spermidine biosynthetic process)
Niben101Scf08415g00010.1	sp|P39062|ACSA_BACSU	***-	Acetyl-coenzyme A synthetase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01695g02011.1	AT1G71050.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=152	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf05955g03050.1	sp|Q7KWM5|ALG2_DICDI	****	Alpha-1,3/1,6-mannosyltransferase ALG2	IPR001296 (Glycosyl transferase, family 1), IPR027054 (Alpha-1,3/1,6-mannosyltransferase ALG2), IPR028098 (Glycosyltransferase subfamily 4, N-terminal domain)	GO:0004378 (GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity), GO:0009058 (biosynthetic process), GO:0033164 (glycolipid 6-alpha-mannosyltransferase activity)
Niben101Scf08687g00003.1	sp|Q0V7P8|FBD15_ARATH	***-	FBD-associated F-box protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf08984g04001.1	AT3G26710.1	***-	cofactor assembly of complex C LENGTH=267	IPR021919 (Protein of unknown function DUF3529)	
Niben101Scf00378g03005.1	sp|Q9SND4|HEC2_ARATH	*-*-	Transcription factor HEC2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01764g00010.1	AT3G21295.1	***-	Tudor/PWWP/MBT superfamily protein LENGTH=645	IPR000313 (PWWP domain)	
Niben101Scf01054g03007.1	ref|XP_002521599.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF40870.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01188g08020.1	AT1G05840.1	***-	Eukaryotic aspartyl protease family protein LENGTH=485	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00773g08003.1	sp|P20144|WUN1_SOLTU	***-	Wound-induced protein 1	IPR016533 (Wound-induced protein, Wun1, subgroup)	
Niben101Scf03448g00001.1	sp|Q9LTJ8|MBD13_ARATH	--*-	Methyl-CpG-binding domain-containing protein 13		
Niben101Scf07965g00004.1	gb|KEH20744.1|	***-	myosin heavy chain, putative [Medicago truncatula]		
Niben101Scf03535g01002.1	AT3G53220.1	***-	Thioredoxin superfamily protein LENGTH=126	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01372g09017.1	sp|Q5ZLW3|DYM_CHICK	***-	Dymeclin	IPR019142 (Dymeclin)	
Niben101Scf00428g01012.1	AT4G14940.1	*-**	amine oxidase 1 LENGTH=650	IPR000269 (Copper amine oxidase)	GO:0005507 (copper ion binding), GO:0008131 (primary amine oxidase activity), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00273g01001.1	sp|Q7EZW6|CSLD3_ORYSJ	****	Cellulose synthase-like protein D3	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf00176g05007.1	ref|WP_016897861.1|	*-*-	MULTISPECIES: phospho-3-sulfolactate synthase [Aerococcus]	IPR003830 ((2R)-phospho-3-sulpholactate synthase, ComA), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0019295 (coenzyme M biosynthetic process)
Niben101Scf09648g01001.1	ref|XP_002491321.1|	****	Mitochondrial NAD+ transporter, involved in the transport of NAD+ into the mitochondria [Komagataella pastoris GS115] emb|CAY69041.1| Mitochondrial NAD+ transporter, involved in the transport of NAD+ into the mitochondria [Komagataella pastoris GS115] emb|CCA38561.1| Calcium-binding mitochondrial carrier protein SCaMC-1 [Komagataella pastoris CBS 7435]	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf04973g02007.1	sp|Q9C996|GLIP6_ARATH	*-**	GDSL esterase/lipase 6	IPR008265 (Lipase, GDSL, active site), IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016298 (lipase activity)
Niben101Scf00414g01005.1	sp|Q9FH18|WIP2_ARATH	*-*-	WPP domain-interacting protein 2		
Niben101Scf02159g01016.1	sp|Q3E984|AGO8_ARATH	*-*-	Protein argonaute 8		
Niben101Scf01166g01037.1	sp|Q4KMJ1|CHAC2_DANRE	***-	Cation transport regulator-like protein 2	IPR006840 (ChaC-like protein), IPR013024 (Butirosin biosynthesis, BtrG-like)	
Niben101Ctg11800g00002.1	AT2G38410.1	*-*-	ENTH/VHS/GAT family protein LENGTH=671		
Niben101Scf11649g01020.1	emb|CDX85329.1|	***-	BnaC07g26400D [Brassica napus]		
Niben101Scf15564g00001.1	gb|ADR31620.1|	***-	DUF579 protein [Populus trichocarpa]	IPR021148 (Putative polysaccharide biosynthesis protein)	
Niben101Scf00777g05008.1	AT3G56680.1	***-	Single-stranded nucleic acid binding R3H protein LENGTH=353	IPR024771 (SUZ domain)	
Niben101Scf05372g05016.1	sp|Q9LQR0|LBD1_ARATH	***-	LOB domain-containing protein 1	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf07409g00010.1			Unknown protein		
Niben101Scf04875g00005.1	AT2G37730.1	*-*-	Protein of unknown function (DUF604) LENGTH=532		
Niben101Scf01426g00007.1	sp|Q6LA43|APRR2_ARATH	*-*-	Two-component response regulator-like APRR2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf10535g01011.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf01056g01010.1	gb|EXX60585.1|	--*-	Pub1p [Rhizophagus irregularis DAOM 197198w]		
Niben101Scf05582g04010.1	AT3G24870.1	****	Helicase/SANT-associated, DNA binding protein LENGTH=1907	IPR009057 (Homeodomain-like), IPR014012 (Helicase/SANT-associated, DNA binding)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01740g17007.1	sp|C8V8H4|DED1_EMENI	****	ATP-dependent RNA helicase ded1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf05417g03029.1	sp|Q9LFW3|COBL4_ARATH	***-	COBRA-like protein 4	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf01526g04020.1	sp|C5BM96|GCSH_TERTT	****	Glycine cleavage system H protein	IPR002930 (Glycine cleavage system H-protein)	GO:0005960 (glycine cleavage complex), GO:0019464 (glycine decarboxylation via glycine cleavage system)
Niben101Scf05937g02013.1	AT1G64530.1	*-*-	Plant regulator RWP-RK family protein LENGTH=841		
Niben101Scf03256g01011.1	sp|O65420|VAL3_ARATH	--*-	B3 domain-containing transcription factor VAL3		
Niben101Scf14877g01014.1	ref|WP_027444691.1|	--*-	membrane protein insertion efficiency factor [Prevotella baroniae]	IPR002696 (Putative membrane protein insertion efficiency factor)	
Niben101Scf04039g04009.1	AT2G15450.1	*-*-	Pectin lyase-like superfamily protein LENGTH=404	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02114g04016.1	AT1G60140.1	*-**	trehalose phosphate synthase LENGTH=861	IPR001830 (Glycosyl transferase, family 20)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process)
Niben101Scf04875g03011.1	AT5G36670.1	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=1193	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02433g06015.1	gb|ADV29615.1|	***-	At5g37260-like protein [Solanum arcanum]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08026g02009.1	sp|O82302|P2C29_ARATH	*-*-	Protein phosphatase 2C 29	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf30199g00012.1	sp|P80206|OTX2_MOUSE	--*-	Homeobox protein OTX2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf10575g02007.1	sp|A0QIQ9|MIAA_MYCA1	*-**	tRNA dimethylallyltransferase	IPR002627 (tRNA isopentenyltransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf02401g00009.1	sp|P56589|PEX3_HUMAN	****	Peroxisomal biogenesis factor 3	IPR006966 (Peroxin-3)	GO:0005779 (integral component of peroxisomal membrane), GO:0007031 (peroxisome organization)
Niben101Scf14458g00004.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03823g01006.1	sp|Q43111|PME3_PHAVU	****	Pectinesterase 3	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf03873g00013.1	AT5G17640.1	***-	Protein of unknown function (DUF1005) LENGTH=432	IPR010410 (Protein of unknown function DUF1005)	
Niben101Scf04416g00014.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03714g05025.1	sp|Q94DE2|BD31A_ORYSJ	***-	Protein BUD31 homolog 1	IPR001748 (G10 protein)	GO:0005634 (nucleus)
Niben101Scf01818g07003.1	sp|Q3TUH1|TAM41_MOUSE	*-*-	Phosphatidate cytidylyltransferase, mitochondrial	IPR015222 (Mitochondrial matrix Mmp37)	
Niben101Scf06588g01011.1	emb|CDY03785.1|	*-*-	BnaC01g29020D [Brassica napus]		
Niben101Scf11812g00024.1	sp|Q8S9G8|SPL7_ARATH	****	Squamosa promoter-binding-like protein 7	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf07739g00013.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf04563g03006.1	AT1G14570.2	***-	UBX domain-containing protein LENGTH=468	IPR003903 (Ubiquitin interacting motif), IPR006577 (UAS), IPR012336 (Thioredoxin-like fold), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf05295g03020.1	sp|Q94CD8|E134_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 4	IPR012946 (X8 domain)	
Niben101Scf00821g11003.1			Unknown protein		
Niben101Scf07477g01011.1	AT3G53900.2	****	uracil phosphoribosyltransferase LENGTH=296	IPR005765 (Uracil phosphoribosyl transferase), IPR029057 (Phosphoribosyltransferase-like)	GO:0004845 (uracil phosphoribosyltransferase activity), GO:0006223 (uracil salvage)
Niben101Scf02847g00017.1	sp|A8HS15|ATPA_AZOC5	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf05566g02013.1	sp|A7XGN8|LOV1B_ARATH	--*-	Disease susceptibility protein LOV1		
Niben101Scf09447g00003.1	emb|CDY48110.1|	--*-	BnaC02g03670D [Brassica napus]		
Niben101Scf07868g03001.1			Unknown protein		
Niben101Ctg08674g00002.1	dbj|BAE48241.1|	*-*-	tetrahydrocannabinolic acid synthase [Cannabis sativa]	IPR012951 (Berberine/berberine-like)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00024g02023.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01008g03012.1	AT4G28440.1	***-	Nucleic acid-binding, OB-fold-like protein LENGTH=153	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf02240g09004.1	sp|Q3TIR1|TPC13_MOUSE	***-	Trafficking protein particle complex subunit 13	IPR010378 (Protein of unknown function DUF974)	
Niben101Scf09906g01004.1	sp|P48968|MPIP3_MESAU	--*-	M-phase inducer phosphatase 3		
Niben101Scf01215g02009.1	AT2G17500.1	***-	Auxin efflux carrier family protein LENGTH=396	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00853g07006.1	sp|Q30Z53|RL24_DESAG	--**	50S ribosomal protein L24	IPR005756 (Ribosomal protein L26/L24P, eukaryotic/archaeal), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf00870g09002.1	emb|CDY26247.1|	***-	BnaA06g11700D [Brassica napus]		
Niben101Scf05056g02015.1	sp|P40937|RFC5_HUMAN	****	Replication factor C subunit 5	IPR003959 (ATPase, AAA-type, core), IPR008921 (DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006260 (DNA replication)
Niben101Scf01484g00009.1	sp|Q66GR0|FLA17_ARATH	***-	Fasciclin-like arabinogalactan protein 17	IPR000782 (FAS1 domain)	
Niben101Scf00585g00007.1	AT2G17530.1	****	Protein kinase superfamily protein LENGTH=440	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01975g03011.1			Unknown protein		
Niben101Scf06687g01003.1	tpg|DAA61715.1|	*-*-	TPA: hypothetical protein ZEAMMB73_567111 [Zea mays]		
Niben101Scf07829g00003.1	gb|KEH39599.1|	***-	embryo-specific protein [Medicago truncatula]	IPR010417 (Embryo-specific 3)	
Niben101Scf04697g01005.1	sp|Q9SS60|PP210_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03735g07020.1	sp|Q9FWX2|NAC7_ARATH	*-*-	NAC domain-containing protein 7	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02074g05058.1			Unknown protein		
Niben101Scf09459g02029.1	sp|O48837|LRKS2_ARATH	****	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09706g00012.1	AT3G14090.1	****	exocyst subunit exo70 family protein D3 LENGTH=623	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf01916g00003.1	sp|Q96519|PER11_ARATH	****	Peroxidase 11	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf16024g00008.1	sp|Q14684|RRP1B_HUMAN	*-**	Ribosomal RNA processing protein 1 homolog B	IPR010301 (Nucleolar, Nop52)	GO:0006364 (rRNA processing), GO:0030688 (preribosome, small subunit precursor)
Niben101Scf06736g01003.1	AT4G20170.1	***-	Domain of unknown function (DUF23) LENGTH=504	IPR008166 (Domain of unknown function DUF23)	
Niben101Scf03925g00013.1			Unknown protein		
Niben101Scf03793g02002.1	gb|ABA91272.1|	--*-	transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa Japonica Group]		
Niben101Scf00294g03006.1	sp|Q9WTZ3|MBTP1_RAT	*-*-	Membrane-bound transcription factor site-1 protease		
Niben101Scf03170g03005.1			Unknown protein		
Niben101Scf01291g04004.1	ref|WP_025955902.1|	*-*-	MULTISPECIES: hypothetical protein [Prochlorococcus]	IPR019616 (Uncharacterised protein family Ycf54)	
Niben101Scf21689g00001.1	sp|Q9SS60|PP210_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01052g02008.1			Unknown protein		
Niben101Scf02581g00010.1	sp|Q148I3|KISHA_BOVIN	***-	Protein kish-A	IPR009653 (Protein of unknown function DUF1242)	
Niben101Scf04556g02009.1	sp|Q8TUS9|VATD_METKA	****	V-type ATP synthase subunit D	IPR002699 (ATPase, V1 complex, subunit D)	GO:0042626 (ATPase activity, coupled to transmembrane movement of substances)
Niben101Scf00369g07017.1	sp|Q9SW09|RS101_ARATH	*-*-	40S ribosomal protein S10-1	IPR005326 (Plectin/S10, N-terminal)	
Niben101Scf09654g02002.1	sp|P36397|ARF1_ARATH	***-	ADP-ribosylation factor 1	IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00474g13002.1	gb|KEH42602.1|	--*-	GRF zinc finger protein [Medicago truncatula]		
Niben101Scf00383g04025.1	sp|A2ZDX9|DHR21_ORYSI	--**	Water stress-inducible protein Rab21	IPR000167 (Dehydrin)	GO:0006950 (response to stress), GO:0009415 (response to water)
Niben101Scf05061g00007.1	AT5G57580.1	***-	Calmodulin-binding protein LENGTH=647	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf01460g02003.1	AT3G18210.1	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=394	IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08806g00005.1	AT5G58787.1	*-*-	RING/U-box superfamily protein LENGTH=242		
Niben101Scf05669g02009.1	sp|Q5XJP1|TSSC1_DANRE	*-*-	Protein TSSC1	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01687g01001.1	sp|Q7ZX41|GNL3_XENLA	****	Guanine nucleotide-binding protein-like 3	IPR006073 (GTP binding domain), IPR014813 (Guanine nucleotide-binding protein-like 3, N-terminal domain), IPR023179 (GTP-binding protein, orthogonal bundle domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf02030g00005.1	ref|XP_002516081.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46501.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02679g01014.1	sp|C6T1Z6|CSPLC_SOYBN	***-	CASP-like protein 4D1		
Niben101Scf04723g00001.1	AT1G47380.1	***-	Protein phosphatase 2C family protein LENGTH=428	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf02090g07006.1	sp|P0DH90|FRIGI_ARATH	*-*-	Protein FRIGIDA	IPR012474 (Frigida-like)	
Niben101Scf00176g02010.1	AT1G11480.1	***-	eukaryotic translation initiation factor-related LENGTH=578		
Niben101Scf17987g00001.1	sp|A4GG98|PSAB_PHAVU	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf11670g03001.1	gb|AAX95129.1|	--*-	retrotransp , putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf02353g06031.1	sp|Q8R344|CCD12_MOUSE	*-*-	Coiled-coil domain-containing protein 12	IPR013169 (mRNA splicing factor, Cwf18)	
Niben101Scf22680g01008.1	AT1G29980.1	*-*-	Protein of unknown function, DUF642 LENGTH=407		
Niben101Scf12092g00015.1	sp|O82268|LSH3_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3	IPR006936 (ALOG domain)	
Niben101Scf02253g01012.1	sp|Q8L4D8|IQD31_ARATH	*-*-	Protein IQ-DOMAIN 31	IPR025064 (Domain of unknown function DUF4005)	
Niben101Scf06976g02010.1	sp|Q9SAI5|RL71_ARATH	***-	60S ribosomal protein L7-1	IPR005998 (Ribosomal protein L7, eukaryotic)	
Niben101Scf01180g02009.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04314g00011.1	sp|Q6NQB7|B3GT7_ARATH	*-**	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf00506g01005.1	sp|B4SQT5|NUOB_STRM5	*-*-	NADH-quinone oxidoreductase subunit B	IPR006137 (NADH:ubiquinone oxidoreductase-like, 20kDa subunit)	GO:0051536 (iron-sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01834g02009.1	AT4G26540.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1091	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf01172g03002.1	sp|Q9SJE8|ALMT2_ARATH	****	Aluminum-activated malate transporter 2	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf01551g00013.1	sp|A6L171|NUOA_BACV8	****	NADH-quinone oxidoreductase subunit A	IPR000440 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08081g03017.1			Unknown protein		
Niben101Scf04950g00011.1	ref|XP_002533956.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF28425.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00630g05008.1	sp|Q54YW8|RPAB3_DICDI	****	DNA-directed RNA polymerases I, II, and III subunit rpabc3	IPR005570 (RNA polymerase, Rpb8)	GO:0006351 (transcription, DNA-templated)
Niben101Ctg14728g00003.1	sp|Q42608|PME_BRACM	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01937g00006.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf05399g00005.1	sp|Q9C509|SGPL_ARATH	****	Sphingosine-1-phosphate lyase	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00972g01012.1	sp|O49048|VPS45_ARATH	***-	Vacuolar protein sorting-associated protein 45 homolog	IPR001619 (Sec1-like protein), IPR027482 (Sec1-like, domain 2)	GO:0006904 (vesicle docking involved in exocytosis), GO:0016192 (vesicle-mediated transport)
Niben101Scf01350g02008.1	ref|WP_009026944.1|	****	sodium:proton antiporter [Bradyrhizobium sp. ORS 375] emb|CCD91944.1| conserved membrane hypothetical protein [Bradyrhizobium sp. ORS 375]	IPR004680 (Citrate transporter-like domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf11254g00015.1	sp|A6MFK9|CRVP_DEMVE	*-*-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf06189g04017.1			Unknown protein		
Niben101Scf05750g00011.1	AT5G50350.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). LENGTH=584		
Niben101Scf05749g02037.1	sp|Q9FIX3|PP407_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04494g00018.1	sp|O04006|PSAH_BRACM	****	Photosystem I reaction center subunit VI, chloroplastic	IPR004928 (Photosystem I PsaH, reaction centre subunit VI), IPR023833 (Signal peptide, camelysin), IPR029027 (Single alpha-helix domain)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf02446g00024.1	ref|WP_017310854.1|	***-	alpha/beta hydrolase [Fischerella sp. PCC 9339]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00527g00003.1	emb|CDX74734.1|	***-	BnaA05g04800D [Brassica napus]	IPR009902 (Protein of unknown function DUF1442), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf06538g02009.1	AT2G44380.1	***-	Cysteine/Histidine-rich C1 domain family protein LENGTH=247	IPR004146 (DC1), IPR011424 (C1-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02752g07008.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf07563g00010.1	sp|Q2S2F5|KYNB_SALRD	****	Kynurenine formamidase	IPR007325 (Kynurenine formamidase)	GO:0004061 (arylformamidase activity), GO:0019441 (tryptophan catabolic process to kynurenine)
Niben101Scf03326g05001.1	AT4G27600.1	****	pfkB-like carbohydrate kinase family protein LENGTH=471	IPR002139 (Ribokinase), IPR029056 (Ribokinase-like)	GO:0004747 (ribokinase activity), GO:0006014 (D-ribose metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00536g05019.1	sp|Q6DF46|COQ6_XENTR	*-**	Ubiquinone biosynthesis monooxygenase COQ6	IPR003042 (Aromatic-ring hydroxylase-like), IPR008671 (Lycopene cyclase-type, FAD-binding), IPR010971 (Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/UbiI/COQ6)	GO:0006744 (ubiquinone biosynthetic process), GO:0008152 (metabolic process), GO:0016117 (carotenoid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016709 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01232g00005.1	sp|P38735|VMR1_YEAST	*-**	ABC transporter ATP-binding protein/permease VMR1	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf13164g02010.1	AT5G49350.1	*-*-	Glycine-rich protein family LENGTH=302		
Niben101Scf18000g00009.1	sp|Q13310|PABP4_HUMAN	*-**	Polyadenylate-binding protein 4	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01048g01009.1			Unknown protein	IPR028144 (Cysteine-rich transmembrane CYSTM domain)	
Niben101Scf02074g07076.1			Unknown protein		
Niben101Scf02207g05033.1	ref|XP_003601252.1|	--*-	Myb [Medicago truncatula] gb|AES71503.1| transcription factor MYB98 [Medicago truncatula]		
Niben101Scf07162g02006.1	AT3G48140.1	***-	B12D protein LENGTH=88	IPR010530 (NADH-ubiquinone reductase complex 1 MLRQ subunit)	
Niben101Scf01690g00010.1	AT1G05270.1	***-	TraB family protein LENGTH=371	IPR002816 (Pheromone shutdown, TraB)	
Niben101Scf31903g00002.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01214g02006.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00080g04013.1	gb|EMT29261.1|	*-**	Exocyst complex component 7 [Aegilops tauschii]	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf03518g07001.1	sp|Q9UPU5|UBP24_HUMAN	--*-	Ubiquitin carboxyl-terminal hydrolase 24	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf17342g00002.1	sp|Q755W0|FAL1_ASHGO	--**	ATP-dependent RNA helicase FAL1	IPR011545 (DEAD/DEAH box helicase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf05487g01002.1	ref|NP_194330.1|	****	RNA-binding KH domain-containing protein PEPPER [Arabidopsis thaliana] emb|CAB39665.1| putative nucleic acid binding protein [Arabidopsis thaliana] emb|CAB79455.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAL07137.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAM20510.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AAM45112.1| putative nucleic acid binding protein [Arabidopsis thaliana] gb|AEE85142.1| RNA-binding KH domain-containing protein PEPPER [Arabidopsis thaliana]	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf03224g10013.1	ref|XP_007023203.1|	*-*-	Post-illumination chlorophyll fluorescence increase isoform 3 [Theobroma cacao] gb|EOY25825.1| Post-illumination chlorophyll fluorescence increase isoform 3 [Theobroma cacao]		
Niben101Scf04209g02007.1	sp|D1BZ82|MSHA_XYLCX	***-	D-inositol 3-phosphate glycosyltransferase	IPR001296 (Glycosyl transferase, family 1), IPR028098 (Glycosyltransferase subfamily 4, N-terminal domain)	GO:0009058 (biosynthetic process)
Niben101Scf15995g02007.1	sp|Q8VHZ7|IMP4_MOUSE	***-	U3 small nucleolar ribonucleoprotein protein IMP4	IPR004154 (Anticodon-binding), IPR007109 (Brix domain)	
Niben101Scf00495g00010.1	AT5G07980.1	*-*-	dentin sialophosphoprotein-related LENGTH=1501		
Niben101Scf27945g00007.1	sp|Q9LZW2|OFP1_ARATH	*-*-	Transcription repressor OFP1	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf07577g01002.1	gb|ADX62208.1|	--*-	Ycf1, partial (chloroplast) [Lepechinia calycina]		
Niben101Scf03925g01009.1	sp|Q9FN94|RLK7_ARATH	--*-	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf01502g02004.1	gb|ABI34321.1|	*-*-	RNase H family protein [Solanum demissum]		
Niben101Scf09778g00018.1	AT3G26560.1	*-**	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf01785g07002.1	AT4G18210.1	***-	purine permease 10 LENGTH=390	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf03911g05002.1	emb|CDY15722.1|	*-*-	BnaA07g08930D [Brassica napus]		
Niben101Scf10262g00004.1	ref|XP_002533162.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29221.1| conserved hypothetical protein [Ricinus communis]	IPR007513 (Uncharacterised protein family SERF)	
Niben101Scf08088g04005.1	sp|P27495|CB24_TOBAC	***-	Chlorophyll a-b binding protein 40, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf00173g02006.1			Unknown protein		
Niben101Scf18175g01006.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf01036g07015.1	ref|NP_001032071.1|	*-*-	protein EMBRYO DEFECTIVE 2737 [Arabidopsis thaliana] gb|AED96418.1| protein embryo defective 2737 [Arabidopsis thaliana]		
Niben101Scf01033g00007.1	sp|P26569|H12_ARATH	--*-	Histone H1.2	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR020478 (AT hook-like)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf15916g00001.1	sp|Q9CAL2|CRK3_ARATH	*-**	Cysteine-rich receptor-like protein kinase 3	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02927g09012.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00597g00010.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf05977g00005.1	sp|F4IHS2|SYD_ARATH	--*-	Chromatin structure-remodeling complex protein SYD		
Niben101Ctg12940g00001.1	sp|Q6QNM1|KC1_TOXGO	*-**	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02456g00016.1	sp|Q9FLB5|LAC12_ARATH	***-	Laccase-12	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01237g13025.1	sp|Q45QI7|CFI_CAMSI	--**	Chalcone--flavonone isomerase	IPR016087 (Chalcone isomerase)	GO:0009813 (flavonoid biosynthetic process), GO:0016872 (intramolecular lyase activity), GO:0045430 (chalcone isomerase activity)
Niben101Scf07812g00013.1	sp|Q9C7N4|GDL15_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02914g00003.1	emb|CDY01820.1|	***-	BnaC06g28600D [Brassica napus]	IPR021924 (Protein of unknown function DUF3537)	
Niben101Scf07226g02003.1	AT3G26310.1	***-	cytochrome P450, family 71, subfamily B, polypeptide 35 LENGTH=500	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13549g00015.1	sp|Q9P0L0|VAPA_HUMAN	*-**	Vesicle-associated membrane protein-associated protein A	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf01427g00010.1	ref|NP_001190518.1|	*-**	ph phosphatase inhibitor [Arabidopsis thaliana]	IPR007062 (Protein phosphatase inhibitor 2 (IPP-2))	GO:0004864 (protein phosphatase inhibitor activity), GO:0009966 (regulation of signal transduction), GO:0043666 (regulation of phosphoprotein phosphatase activity)
Niben101Scf06778g01005.1	AT5G24970.2	***-	Protein kinase superfamily protein LENGTH=761	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06774g02013.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02195g00002.1	AT4G36830.1	****	GNS1/SUR4 membrane protein family LENGTH=289	IPR002076 (ELO family)	GO:0016021 (integral component of membrane)
Niben101Scf05919g00004.1	sp|Q84JP1|NFYA7_ARATH	*-**	Nuclear transcription factor Y subunit A-7	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf18652g00024.1	sp|Q5FGW5|NUOH_EHRRG	--*-	NADH-quinone oxidoreductase subunit H		
Niben101Scf23098g00005.1	sp|Q84LH3|WEX_ARATH	--*-	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf06754g01020.1	sp|O22199|P4KG1_ARATH	***-	Phosphatidylinositol 4-kinase gamma 1	IPR000403 (Phosphatidylinositol 3-/4-kinase, catalytic domain)	GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf03006g06018.1	ref|XP_007028518.1|	***-	Plant protein 1589 of Uncharacterized protein function isoform 4 [Theobroma cacao] gb|EOY09020.1| Plant protein 1589 of Uncharacterized protein function isoform 4 [Theobroma cacao]		
Niben101Scf03155g01001.1			Unknown protein		
Niben101Scf04742g03019.1	ref|WP_014541084.1|	****	amino acid transporter [Chlamydia trachomatis] ref|YP_005808208.1| tyr [Chlamydia trachomatis G/9301]	IPR018227 (Tryptophan/tyrosine permease)	GO:0003333 (amino acid transmembrane transport)
Niben101Scf05063g04023.1	sp|Q6NPF4|MD20A_ARATH	*-**	Mediator of RNA polymerase II transcription subunit 20a	IPR013921 (Mediator complex, subunit Med20)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf01012g01006.1	ref|WP_011460763.1|	--*-	chemotaxis protein [Desulfitobacterium hafniense] ref|YP_519227.1| hypothetical protein DSY2994 [Desulfitobacterium hafniense Y51] dbj|BAE84783.1| hypothetical protein [Desulfitobacterium hafniense Y51]		
Niben101Scf07442g01008.1	sp|Q9STE1|PP333_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01327g01013.1	sp|Q9CZA5|ZCH12_MOUSE	--*-	Zinc finger CCHC domain-containing protein 12		
Niben101Scf18652g00026.1	ref|XP_007010390.1|	*-*-	Retrotransp [Theobroma cacao]		
Niben101Scf02197g00001.1	sp|A4FV54|RAB8A_BOVIN	***-	Ras-related protein Rab-8A	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02025g04007.1	sp|A0A379|YCF2_COFAR	*-*-	Protein Ycf2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00128g03004.1	sp|O80437|GPAT6_ARATH	***-	Glycerol-3-phosphate 2-O-acyltransferase 6	IPR002123 (Phospholipid/glycerol acyltransferase), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf02613g05004.1	ref|XP_003603443.1|	***-	EG45-like domain containing protein [Medicago truncatula]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf00938g01015.1	sp|Q6GL69|MK67I_XENTR	*-*-	MKI67 FHA domain-interacting nucleolar phosphoprotein-like	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf08535g04002.1	sp|Q84M94|FBK15_ARATH	*-*-	F-box/kelch-repeat protein	IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf09876g01015.1	sp|O04504|PPR27_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf13150g04016.1	sp|C6XAJ7|NUOK_METGS	--**	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf04207g01010.1	sp|Q8VYK4|NFYB8_ARATH	****	Nuclear transcription factor Y subunit B-8	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf08304g06011.1			Unknown protein		
Niben101Scf00507g00010.1	gb|ACU28647.1|	*-*-	At4g14280-like protein [Arabidopsis lyrata subsp. petraea]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf03865g05002.1	sp|Q5CZL1|GDAP2_XENTR	*-*-	Ganglioside-induced differentiation-associated protein 2	IPR001251 (CRAL-TRIO domain)	
Niben101Scf04114g00060.1	sp|Q07060|ATP9_PETSP	*-**	ATP synthase subunit 9, mitochondrial	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf00449g02005.1	AT2G37585.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=384	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf13762g01032.1			Unknown protein		
Niben101Scf03245g03002.1	emb|CDX88033.1|	--*-	BnaA06g26240D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf02151g04028.1	sp|Q54WR5|CCD94_DICDI	***-	Coiled-coil domain-containing protein 94 homolog	IPR007590 (CWC16 protein)	
Niben101Scf01018g08014.1	sp|P55852|SUMO1_ARATH	***-	Small ubiquitin-related modifier 1	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf00866g00001.1	sp|Q9C5W9|ARFR_ARATH	****	Auxin response factor 18	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf31339g00003.1	gb|AGQ44775.1|	--*-	general transcription factor [Camellia sinensis]		
Niben101Scf05494g00013.1	sp|Q3T130|TM45B_BOVIN	***-	Transmembrane protein 45B	IPR006904 (Protein of unknown function DUF716 (TMEM45))	
Niben101Scf10272g00005.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf09334g02006.1	emb|CDX74290.1|	***-	BnaA03g27570D [Brassica napus]	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00159g08019.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf10124g03001.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Ctg13507g00001.1	sp|Q99442|SEC62_HUMAN	--*-	Translocation protein SEC62		
Niben101Scf04019g07017.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf08341g09010.1	ref|XP_002530720.1|	-**-	Protein SCRL10 precursor, putative [Ricinus communis] gb|EEF31674.1| Protein SCRL10 precursor, putative [Ricinus communis]		
Niben101Scf04209g02009.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf05025g10008.1	ref|XP_002519322.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF43186.1| DNA binding protein, putative [Ricinus communis]	IPR003656 (Zinc finger, BED-type), IPR007021 (Domain of unknown function DUF659), IPR008906 (HAT dimerisation domain, C-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf06058g00023.1			Unknown protein		
Niben101Scf27945g00005.1	gb|AAD02545.2|	*-*-	PGPS/D3 [Petunia x hybrida]		
Niben101Scf03263g06005.1			Unknown protein		
Niben101Scf06240g00001.1	sp|Q9BTD8|RBM42_HUMAN	*-**	RNA-binding protein 42	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf10316g01005.1	ref|XP_002530403.1|	****	carbohydrate binding protein, putative [Ricinus communis] gb|EEF31973.1| carbohydrate binding protein, putative [Ricinus communis]	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0030246 (carbohydrate binding)
Niben101Scf04537g01017.1	AT4G01200.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=250	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf11383g03004.1	AT5G28150.1	*-*-	Plant protein of unknown function (DUF868) LENGTH=289	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf03222g01012.1	AT4G32410.1	****	cellulose synthase 1 LENGTH=1081	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf26762g00005.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf06467g02008.1	sp|Q7XHI9|BH084_ARATH	*-*-	Transcription factor bHLH84		
Niben101Scf03515g00082.1	sp|Q16AE8|RL2_ROSDO	*-*-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00397g11005.1	sp|Q5K4R0|MAD47_ORYSJ	****	MADS-box transcription factor 47	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf13387g00027.1	sp|Q7ZUQ3|STK3_DANRE	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01922g03015.1	AT4G13580.1	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=244	IPR004265 (Plant disease resistance response protein)	
Niben101Scf00173g02007.1	sp|Q9LIG6|NIFU4_ARATH	--*-	NifU-like protein 4, mitochondrial		
Niben101Scf00015g04023.1	emb|CDY22546.1|	***-	BnaC03g23560D [Brassica napus]		
Niben101Scf03438g05008.1	sp|Q6YYC0|C3H55_ORYSJ	--*-	Zinc finger CCCH domain-containing protein 55	IPR000571 (Zinc finger, CCCH-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf03786g03002.1	sp|B5YKI3|NUOB1_THEYD	****	NADH-quinone oxidoreductase subunit B 1	IPR006138 (NADH-ubiquinone oxidoreductase, 20 Kd subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0048038 (quinone binding), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05628g01003.1	ref|XP_007017281.1|	*-*-	Phosphatidic acid phosphohydrolase 2 isoform 12 [Theobroma cacao] gb|EOY14506.1| Phosphatidic acid phosphohydrolase 2 isoform 12 [Theobroma cacao]	IPR007651 (Lipin, N-terminal), IPR013209 (LNS2, Lipin/Ned1/Smp2), IPR023214 (HAD-like domain)	
Niben101Scf11124g01012.1	sp|Q9SHK2|PPR17_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf12941g01003.1	sp|Q2HJN6|EF1A3_OSCTI	****	Elongation factor 1-alpha 3	IPR004539 (Translation elongation factor EF1A, eukaryotic/archaeal), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005737 (cytoplasm), GO:0006414 (translational elongation)
Niben101Scf02853g02001.1	sp|Q5RJC5|C3H67_ARATH	***-	Zinc finger CCCH domain-containing protein 67	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf00446g01002.1	sp|O49603|CVIF2_ARATH	****	Cell wall / vacuolar inhibitor of fructosidase 2	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf05056g00005.1	sp|Q8XA87|DEAD_ECO57	****	ATP-dependent RNA helicase DeaD	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf00428g00001.1	sp|P36408|GBB_DICDI	*-**	Guanine nucleotide-binding protein subunit beta	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf06291g03023.1	sp|A7Z0M6|RL10_BACA2	***-	50S ribosomal protein L10	IPR001790 (Ribosomal protein L10/acidic P0)	GO:0005622 (intracellular), GO:0042254 (ribosome biogenesis)
Niben101Scf06556g11012.1	sp|Q9LUR0|CNDH2_ARATH	***-	Condensin-2 complex subunit H2	IPR009378 (Non-SMC condensin II complex, subunit H2-like)	
Niben101Scf07693g00004.1			Unknown protein		
Niben101Scf05484g01017.1	AT4G35160.1	****	O-methyltransferase family protein LENGTH=382	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf12405g00021.1	sp|P74361|CLPB2_SYNY3	*-*-	Chaperone protein ClpB 2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf19091g00008.1			Unknown protein		
Niben101Scf01866g01027.1	sp|Q9CAM8|PP100_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00271g02011.1	gb|KEH24914.1|	***-	senescence-associated protein [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf05645g04001.1			Unknown protein		
Niben101Scf20283g01025.1	ref|XP_007020270.1|	--*-	Alpha/beta-Hydrolases superfamily protein, putative [Theobroma cacao] gb|EOY17495.1| Alpha/beta-Hydrolases superfamily protein, putative [Theobroma cacao]		
Niben101Scf00051g05016.1	sp|Q8S8M9|ALFL6_ARATH	*-*-	PHD finger protein ALFIN-LIKE 6	IPR021998 (Alfin)	GO:0006355 (regulation of transcription, DNA-templated), GO:0042393 (histone binding)
Niben101Scf08111g01004.1	AT5G17190.1	****	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf04067g02008.1	sp|Q10QA2|CCD53_ORYSJ	--*-	Cyclin-D5-3	IPR013763 (Cyclin-like)	
Niben101Scf23814g00037.1	sp|Q5FPT6|GLND_GLUOX	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf05142g00029.1			Unknown protein		
Niben101Scf04950g04012.1			Unknown protein		
Niben101Scf07260g00003.1	sp|P04798|CP1A1_HUMAN	*-*-	Cytochrome P450 1A1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00110g01011.1	sp|Q9V195|RS9_PYRAB	***-	30S ribosomal protein S9	IPR000754 (Ribosomal protein S9), IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf14805g04012.1	AT1G14430.1	***-	glyoxal oxidase-related protein LENGTH=564	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR014756 (Immunoglobulin E-set), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf00481g03003.1	sp|Q5ZJQ8|UBAC2_CHICK	***-	Ubiquitin-associated domain-containing protein 2	IPR007599 (Derlin), IPR009060 (UBA-like), IPR022764 (Peptidase S54, rhomboid domain)	GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0016021 (integral component of membrane)
Niben101Scf12470g00011.1	tpg|DAA57595.1|	*-*-	TPA: hypothetical protein ZEAMMB73_569368 [Zea mays]		
Niben101Scf00817g04005.1	gb|AII99839.1|	*-*-	WRKY transcription factor [Nicotiana tabacum]		
Niben101Scf09590g02002.1	sp|Q8S9L6|CRK29_ARATH	*-**	Cysteine-rich receptor-like protein kinase 29	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09433g01014.1	AT2G46220.1	***-	Uncharacterized conserved protein (DUF2358) LENGTH=241	IPR018790 (Protein of unknown function DUF2358)	
Niben101Scf00783g04006.1	sp|Q15814|TBCC_HUMAN	*-**	Tubulin-specific chaperone C	IPR016098 (Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal), IPR017901 (C-CAP/cofactor C-like domain), IPR027684 (Tubulin-specific chaperone C)	GO:0000902 (cell morphogenesis), GO:0007023 (post-chaperonin tubulin folding pathway)
Niben101Scf09169g01003.1	ref|XP_007009128.1|	--**	RING/FYVE/PHD zinc finger superfamily protein [Theobroma cacao] gb|EOY17938.1| RING/FYVE/PHD zinc finger superfamily protein [Theobroma cacao]	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf00571g08002.1	sp|Q038N5|DNAJ_LACC3	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf02026g00015.1	sp|Q9ZUW3|PP172_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01075g01017.1	sp|P0CP23|CCR4_CRYNB	*-*-	Glucose-repressible alcohol dehydrogenase transcriptional effector	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf03253g02006.1	sp|B1L938|RL1_THESQ	****	50S ribosomal protein L1	IPR016095 (Ribosomal protein L1, 3-layer alpha/beta-sandwich), IPR023673 (Ribosomal protein L1, conserved site), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf34323g00005.1	AT5G51880.1	***-	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=250		
Niben101Scf04318g00001.1	sp|Q9M907|PP217_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07775g01006.1	sp|Q84UU9|TPS06_ARATH	****	Terpenoid synthase 6	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf11960g02015.1			Unknown protein		
Niben101Scf15120g00001.1	emb|CDX99259.1|	*-*-	BnaC05g33740D [Brassica napus]		
Niben101Scf09678g01007.1	sp|Q9M390|PTR1_ARATH	***-	Protein NRT1/ PTR FAMILY 8.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf01188g10002.1	sp|Q96288|BBX24_ARATH	***-	B-box zinc finger protein 24		
Niben101Scf00109g10013.1	AT2G34350.1	***-	Nodulin-like / Major Facilitator Superfamily protein LENGTH=525	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf04021g06008.1	gb|AAF99785.1|AC012463_2	*-*-	T2E6.4 [Arabidopsis thaliana]		
Niben101Scf10366g00015.1	sp|Q8VYW6|GAGT1_ARATH	--*-	Gamma-glutamyltranspeptidase 1		
Niben101Scf09556g00004.1	sp|Q9LZ60|SMR3_ARATH	-**-	Cyclin-dependent protein kinase inhibitor SMR3		
Niben101Scf01551g00014.1	sp|B3EH96|RS12_CHLL2	****	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf07640g01009.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf01219g04010.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01249g06006.1	sp|Q67VS5|HAK10_ORYSJ	****	Potassium transporter 10	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf04869g04002.1	AT5G19440.1	****	NAD(P)-binding Rossmann-fold superfamily protein LENGTH=326	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf16082g01001.1	emb|CDX83122.1|	***-	BnaA01g21220D [Brassica napus]		
Niben101Scf00872g00007.1	sp|O25883|FUMC_HELPY	****	Fumarate hydratase class II	IPR000362 (Fumarate lyase family), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0004333 (fumarate hydratase activity), GO:0006099 (tricarboxylic acid cycle), GO:0006106 (fumarate metabolic process), GO:0016829 (lyase activity), GO:0045239 (tricarboxylic acid cycle enzyme complex)
Niben101Scf00509g00016.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2		
Niben101Scf00972g01011.1	sp|Q5R891|LNP_PONAB	***-	Protein lunapark	IPR019273 (Domain of unknown function DUF2296)	
Niben101Scf17771g00002.1			Unknown protein		
Niben101Scf01326g00013.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01702g03001.1	sp|P12460|TBB2_SOYBN	*-*-	Tubulin beta-2 chain	IPR000217 (Tubulin)	GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0007017 (microtubule-based process)
Niben101Ctg09509g00002.1	sp|P28811|MMSB_PSEAE	****	3-hydroxyisobutyrate dehydrogenase	IPR013328 (Dehydrogenase, multihelical), IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04652g00019.1	sp|Q14839|CHD4_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 4	IPR000330 (SNF2-related), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016197 (Chromo domain-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf07648g01019.1	sp|P92934|AAP6_ARATH	***-	Amino acid permease 6	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf18513g00007.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf01240g12006.1	AT4G21380.1	*-**	receptor kinase 3 LENGTH=850	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf23606g00013.1	sp|Q9SIA3|MATE6_ARATH	*-*-	MATE efflux family protein 6	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01310g02005.1	ref|XP_002531960.1|	-**-	60S rib L16, putative [Ricinus communis]		
Niben101Scf08191g00004.1	sp|Q9SY02|PP301_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07522g00002.1	sp|Q5M7C8|HORM1_XENLA	*-*-	HORMA domain-containing protein 1	IPR003511 (DNA-binding HORMA), IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf01718g02006.1	gb|EMS47823.1|	*-**	Translation initiation factor IF-3 [Triticum urartu]	IPR001288 (Translation initiation factor 3)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf00409g00014.1			Unknown protein		
Niben101Scf00207g05012.1			Unknown protein		
Niben101Scf00270g12006.1	sp|Q9SEE4|PIRL_SOLLC	***-	Pirin-like protein	IPR012093 (Pirin), IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf03551g01002.1	AT5G15740.1	***-	O-fucosyltransferase family protein LENGTH=508	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf02172g05002.1	gb|ACF28613.1|	***-	yellow stripe-like protein 5.8 [Brassica juncea]	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf02725g06001.1	AT1G17100.1	***-	SOUL heme-binding family protein LENGTH=232	IPR006917 (SOUL haem-binding protein), IPR011256 (Regulatory factor, effector binding domain)	
Niben101Ctg14445g00001.1	sp|Q54VM3|TBC5A_DICDI	*-*-	TBC1 domain family member 5 homolog A		
Niben101Scf28363g00012.1	gb|ABF94638.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR018289 (MULE transposase domain)	
Niben101Scf09052g01003.1	sp|F4J4N3|DIR17_ARATH	*-*-	Dirigent protein 17	IPR004265 (Plant disease resistance response protein)	
Niben101Scf25634g00001.1	ref|XP_007042325.1|	*-*-	BAT2 domain-containing protein 1 [Theobroma cacao] gb|EOX98156.1| BAT2 domain-containing protein 1 [Theobroma cacao]		
Niben101Scf05588g03007.1	emb|CDX93559.1|	***-	BnaA06g04890D [Brassica napus]		
Niben101Scf07038g00006.1	sp|Q9LFW3|COBL4_ARATH	*-*-	COBRA-like protein 4	IPR006918 (COBRA, plant)	GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0031225 (anchored component of membrane)
Niben101Scf05761g01006.1	emb|CDY66503.1|	*-*-	BnaAnng22330D [Brassica napus]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf18254g00001.1	ref|NP_001048145.1|	***-	product [Oryza sativa Japonica Group]	IPR008976 (Lipase/lipooxygenase, PLAT/LH2)	GO:0005515 (protein binding)
Niben101Scf03986g00002.1	AT4G17720.1	****	RNA-binding (RRM/RBD/RNP motifs) family protein LENGTH=313	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00141g02002.1	ref|XP_002530394.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF31964.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06737g00031.1	sp|Q9SXD8|PPR90_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04044g01023.1			Unknown protein		
Niben101Scf01858g01029.1	gb|KEH27779.1|	***-	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]		
Niben101Scf04292g03010.1	AT5G12470.1	*-*-	Protein of unknown function (DUF3411) LENGTH=386	IPR007314 (Domain of unknown function DUF399), IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf01181g04009.1	ref|WP_019258183.1|	***-	L-alanine-DL-glutamate epimerase [Bacillus subtilis]	IPR001354 (Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase), IPR029017 (Enolase N-terminal domain-like), IPR029065 (Enolase C-terminal domain-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf02455g03025.1	AT1G80510.1	***-	Transmembrane amino acid transporter family protein LENGTH=489	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf03862g03005.1	ref|XP_007015994.1|	*-*-	ARM repeat superfamily protein, putative isoform 1 [Theobroma cacao] gb|EOY33613.1| ARM repeat superfamily protein, putative isoform 1 [Theobroma cacao]		
Niben101Scf02175g03007.1	AT1G20460.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=106		
Niben101Scf00520g12001.1	gb|AGA37215.1|	*-*-	mitogen-activated protein kinase kinase kinase 18.1 [Brassica napus]		
Niben101Scf11169g00004.1			Unknown protein		
Niben101Scf00870g09001.1	AT1G16220.1	*-*-	Protein phosphatase 2C family protein LENGTH=491	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf03576g01038.1	AT3G17750.1	*-**	Protein kinase superfamily protein LENGTH=1138	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01060g00002.1	AT5G44400.1	****	FAD-binding Berberine family protein LENGTH=537	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07428g00014.1	tpg|DAA61305.1|	*-*-	TPA: hypothetical protein ZEAMMB73_565062 [Zea mays]		
Niben101Scf05468g06002.1	AT4G15390.1	****	HXXXD-type acyl-transferase family protein LENGTH=446	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf09884g00003.1	sp|Q9LK50|AB26G_ARATH	*-*-	ABC transporter G family member 26		
Niben101Scf08341g11003.1	AT5G19650.1	*-*-	ovate family protein 8 LENGTH=221	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf04036g04001.1	sp|P81396|MYB40_ANTMA	*-*-	Myb-related protein 340	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf14079g00004.1	sp|A9M041|GLK_NEIM0	--*-	Glucokinase		
Niben101Scf05226g06007.1	dbj|BAA76516.1|	--*-	HR7 [Hyoscyamus niger]		
Niben101Scf03706g02006.1	sp|P83948|PME3_CITSI	****	Pectinesterase 3	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf10015g10005.1	emb|CDY44644.1|	***-	BnaC04g06180D [Brassica napus]		
Niben101Scf00530g06008.1	sp|Q3SWX8|RBBP7_BOVIN	--*-	Histone-binding protein RBBP7		
Niben101Scf12483g02006.1	ref|XP_001896223.1|	--*-	Pao retrotransposon peptidase family protein [Brugia malayi]		
Niben101Scf06328g00004.1	sp|Q8LDC8|ERF92_ARATH	****	Ethylene-responsive transcription factor 1B	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04300g05005.1	sp|P36612|PRS4_SCHPO	***-	26S protease regulatory subunit 4 homolog	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf03978g06007.1	sp|Q80TL7|MON2_MOUSE	*-*-	Protein MON2 homolog	IPR016024 (Armadillo-type fold), IPR026829 (Monensin-resistant homologue 2)	GO:0005488 (binding), GO:0015031 (protein transport)
Niben101Scf04563g03007.1	AT2G43950.1	***-	chloroplast outer envelope protein 37 LENGTH=343		
Niben101Scf00797g02009.1	sp|Q8S8F5|EF4L3_ARATH	*-*-	Protein ELF4-LIKE 3	IPR009741 (Protein of unknown function DUF1313)	
Niben101Scf01374g04005.1	sp|Q4P821|COX19_USTMA	*-*-	Cytochrome c oxidase assembly protein COX19	IPR010625 (CHCH)	
Niben101Scf04001g03004.1	sp|Q9EQN5|SMBP2_RAT	****	DNA-binding protein SMUBP-2	IPR004483 (Helicase SMUBP-2/Hcs1-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf02108g02016.1	gb|AAU90336.1|	*-*-	F-box protein interaction domain containing protein [Solanum demissum]		
Niben101Scf09822g01016.1	AT1G05675.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=453	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04827g01001.1	sp|Q84LH3|WEX_ARATH	****	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf02010g01010.1	AT1G55000.1	****	peptidoglycan-binding LysM domain-containing protein LENGTH=221	IPR001810 (F-box domain), IPR018392 (LysM domain)	GO:0005515 (protein binding)
Niben101Scf12738g00010.1	sp|P00243|FER_SYNY4	***-	Ferredoxin	IPR010241 (Ferredoxin [2Fe-2S], plant), IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0022900 (electron transport chain), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf01950g04012.1	gb|AES77964.2|	***-	WRKY transcription factor-like protein [Medicago truncatula]		
Niben101Scf30867g00006.1	gb|KEH38573.1|	*-*-	LRR receptor-like kinase [Medicago truncatula]		
Niben101Scf02159g01018.1	sp|Q9SDG8|AGO4A_ORYSJ	***-	Protein argonaute 4A	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf22566g00018.1	AT3G15358.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=144		
Niben101Scf02360g01029.1	AT1G58110.1	***-	Basic-leucine zipper (bZIP) transcription factor family protein LENGTH=374		
Niben101Scf26737g00001.1	ref|WP_008056381.1|	*-**	membrane protein [Arthrospira sp. PCC 8005] emb|CCE20009.1| putative permease (membrane component) [Arthrospira sp. PCC 8005] emb|CDM98553.1| putative permease (membrane component) [Arthrospira sp. PCC 8005]	IPR000620 (EamA domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf11744g00001.1	sp|Q9LFL5|PP390_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04878g00027.1	AT1G09610.1	*-*-	Protein of unknown function (DUF579) LENGTH=282	IPR021148 (Putative polysaccharide biosynthesis protein)	
Niben101Scf02921g00002.1	AT1G72510.1	***-	Protein of unknown function (DUF1677) LENGTH=165	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf03284g00001.1	sp|Q7XT39|EXPB5_ORYSJ	*-*-	Expansin-B5	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf06461g06012.1	AT2G07360.2	***-	SH3 domain-containing protein LENGTH=1198	IPR001452 (SH3 domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf07165g00009.1	AT2G27660.1	*-*-	Cysteine/Histidine-rich C1 domain family protein LENGTH=718	IPR011424 (C1-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04451g00027.1	ref|XP_003588355.1|	*-*-	Mitochondrial protein, putative [Medicago truncatula]		
Niben101Scf21895g00007.1	sp|Q9Y6U7|RN215_HUMAN	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09467g01007.1	sp|Q8K0R6|GLTD2_MOUSE	--*-	Glycolipid transfer protein domain-containing protein 2		
Niben101Scf01779g05002.1	sp|Q9M3V8|RS6_ASPOF	***-	40S ribosomal protein S6	IPR001377 (Ribosomal protein S6e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf32747g00001.1	sp|O48916|FAH1_ARATH	****	Fatty acid 2-hydroxylase 1	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00100g00015.1	sp|P69103|GBLP_TRYBB	*-**	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf06992g00012.1	AT4G00990.1	***-	Transcription factor jumonji (jmjC) domain-containing protein LENGTH=840	IPR003347 (JmjC domain)	
Niben101Scf01812g01009.1	sp|Q9S7R7|Y3903_ARATH	--*-	BTB/POZ domain-containing protein	IPR001646 (Pentapeptide repeat), IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding), GO:0051260 (protein homooligomerization)
Niben101Scf08228g03002.1	sp|O24592|NCED1_MAIZE	*-*-	9-cis-epoxycarotenoid dioxygenase 1, chloroplastic	IPR004294 (Carotenoid oxygenase)	
Niben101Scf00837g11005.1	ref|XP_007017834.1|	****	Transcription elongation factor family protein, putative isoform 1 [Theobroma cacao] ref|XP_007017835.1| Transcription elongation factor family protein, putative isoform 1 [Theobroma cacao] gb|EOY15059.1| Transcription elongation factor family protein, putative isoform 1 [Theobroma cacao] gb|EOY15060.1| Transcription elongation factor family protein, putative isoform 1 [Theobroma cacao]	IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf01020g01004.1	sp|P27495|CB24_TOBAC	*-*-	Chlorophyll a-b binding protein 40, chloroplastic		
Niben101Scf00069g03003.1	sp|Q54NP8|KIF4_DICDI	*-**	Kinesin-related protein 4	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf08926g07009.1	sp|Q9C9Z5|NDUA1_ARATH	***-	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1	IPR017384 (NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex subunit 1)	
Niben101Scf01863g05003.1	ref|XP_002533569.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF28804.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05030g03005.1	sp|Q1JPL7|PME18_ARATH	****	Pectinesterase/pectinesterase inhibitor 18	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02015g07029.1	sp|O33836|GAL7_THEMA	****	Galactose-1-phosphate uridylyltransferase	IPR001937 (Galactose-1-phosphate uridyl transferase, class I), IPR011146 (HIT-like domain)	GO:0003824 (catalytic activity), GO:0006012 (galactose metabolic process), GO:0008108 (UDP-glucose:hexose-1-phosphate uridylyltransferase activity), GO:0008270 (zinc ion binding)
Niben101Scf00906g00007.1	emb|CDY01946.1|	--*-	BnaC02g27810D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00177g00008.1			Unknown protein	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf03021g03050.1			Unknown protein		
Niben101Scf07383g09002.1	ref|NP_193381.1|	*-**	in [Arabidopsis thaliana] gb|AAO42160.1| putative membrane transporter [Arabidopsis thaliana] gb|AAO64127.1| putative membrane transporter [Arabidopsis thaliana] emb|CAJ00306.1| inositol transporter 4 [Arabidopsis thaliana] gb|AEE83759.1| inositol transporter 4 [Arabidopsis thaliana]	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04754g02007.1	gb|AFW71223.1|	*-*-	meiosis 5 [Zea mays]		
Niben101Scf02418g00017.1	sp|Q402E2|H33A_LILLO	*-*-	Histone H3.3a	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf00236g01005.1	sp|C3XVT5|LIS1_BRAFL	***-	Lissencephaly-1 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR028608 (Probable cytosolic iron-sulfur protein assembly protein, CIAO1/Cia1)	GO:0005515 (protein binding), GO:0016226 (iron-sulfur cluster assembly), GO:0097361 (CIA complex)
Niben101Scf01418g02009.1	sp|Q8VYG3|GUN16_ARATH	***-	Endoglucanase 16	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03469g04001.1	sp|Q8LAX0|HMT3_ARATH	****	Homocysteine S-methyltransferase 3	IPR003726 (Homocysteine S-methyltransferase)	GO:0008898 (S-adenosylmethionine-homocysteine S-methyltransferase activity)
Niben101Scf04732g00001.1			Unknown protein	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf05934g01005.1	gb|ADK13061.1|	***-	conserved hypothetical protein 4 [Hevea brasiliensis]	IPR015157 (Translation machinery associated TMA7)	
Niben101Scf01436g02014.1	sp|A1QZK9|PURA_BORT9	--*-	Adenylosuccinate synthetase		
Niben101Scf04185g03015.1	sp|Q948X8|MTNA_TOBAC	*-*-	Methylthioribose-1-phosphate isomerase	IPR000649 (Initiation factor 2B-related)	GO:0044237 (cellular metabolic process)
Niben101Scf20324g00001.1	AT2G36290.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=364	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf14877g01015.1	sp|Q93Y40|ORP3C_ARATH	***-	Oxysterol-binding protein-related protein 3C	IPR000648 (Oxysterol-binding protein)	
Niben101Scf01445g00004.1	gb|AAB87670.1|	***-	adenyl cyclase [Nicotiana tabacum]		
Niben101Scf04331g02003.1	gb|KEH43814.1|	*-*-	IQ calmodulin-binding motif protein [Medicago truncatula]		
Niben101Scf04185g03016.1	sp|Q5BJ29|FBXL7_MOUSE	--*-	F-box/LRR-repeat protein 7	IPR001810 (F-box domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0005515 (protein binding)
Niben101Scf25161g00001.1	gb|AGW82761.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia calycina]		
Niben101Scf03634g05001.1	AT5G17930.1	*-*-	MIF4G domain-containing protein / MA3 domain-containing protein LENGTH=784		
Niben101Scf01789g02047.1	sp|P50455|LEU3_SULTO	****	3-isopropylmalate dehydrogenase	IPR001804 (Isocitrate and isopropylmalate dehydrogenases family), IPR024084 (Isopropylmalate dehydrogenase-like domain)	GO:0000287 (magnesium ion binding), GO:0004449 (isocitrate dehydrogenase (NAD+) activity), GO:0006099 (tricarboxylic acid cycle), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03216g00001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02450g03010.1	sp|Q8NEZ4|KMT2C_HUMAN	*-*-	Histone-lysine N-methyltransferase 2C	IPR001214 (SET domain), IPR003616 (Post-SET domain), IPR025787 (Histone-lysine N-methyltransferase, SET2, plant)	GO:0005515 (protein binding)
Niben101Scf02790g02007.1	sp|Q9LIG2|RLK6_ARATH	--**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03107g01011.1	sp|P73456|FTSZ_SYNY3	***-	Cell division protein FtsZ	IPR000158 (Cell division protein FtsZ)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005737 (cytoplasm), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf06722g00001.1	sp|A6LSC2|FABH_CLOB8	***-	3-oxoacyl-[acyl-carrier-protein] synthase 3	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02947g01010.1	sp|Q8GWZ6|SRR1_ARATH	--*-	Protein SENSITIVITY TO RED LIGHT REDUCED 1		
Niben101Scf08893g00009.1	sp|Q8S8E3|PYL6_ARATH	***-	Abscisic acid receptor PYL6	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf04036g00003.1	sp|P08628|THIO_RABIT	*-*-	Thioredoxin	IPR011990 (Tetratricopeptide-like helical domain), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding), GO:0045454 (cell redox homeostasis)
Niben101Scf05937g02014.1	AT2G27230.1	*-*-	transcription factor-related LENGTH=650		
Niben101Scf00837g11004.1	AT4G24190.1	*-*-	Chaperone protein htpG family protein LENGTH=823	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf05649g05007.1			Unknown protein		
Niben101Scf05011g01027.1	AT5G01920.1	****	Protein kinase superfamily protein LENGTH=495	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02207g04003.1	gb|EER38924.1|	--*-	protein kinase C [Ajellomyces capsulatus H143]		
Niben101Scf10575g02006.1	sp|Q9NRZ5|PLCD_HUMAN	*-**	1-acyl-sn-glycerol-3-phosphate acyltransferase delta	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf03923g14012.1	sp|Q32LA7|H2AV_BOVIN	***-	Histone H2A.V	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf01350g00012.1	sp|Q71DJ5|LIP1_ARATH	*-*-	Triacylglycerol lipase 1	IPR006693 (Partial AB-hydrolase lipase domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf05189g00002.1	sp|Q8RX77|PTR21_ARATH	***-	Protein NRT1/ PTR FAMILY 2.13	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf04106g01009.1	AT1G11260.1	****	sugar transporter 1 LENGTH=522	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf09512g02007.1	sp|Q9LPC4|PPR1_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03823g01005.1	sp|P83948|PME3_CITSI	****	Pectinesterase 3	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf07623g01010.1	sp|P0DH90|FRIGI_ARATH	*-*-	Protein FRIGIDA	IPR012474 (Frigida-like)	
Niben101Scf02349g03001.1	sp|A7NY33|PER4_VITVI	****	Peroxidase 4	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06423g03031.1	sp|Q8GWU0|PGP2_ARATH	****	Phosphoglycolate phosphatase 2	IPR006357 (HAD-superfamily hydrolase, subfamily IIA), IPR023214 (HAD-like domain), IPR023215 (Nitrophenylphosphatase-like  domain)	GO:0008152 (metabolic process), GO:0016791 (phosphatase activity)
Niben101Scf03038g04011.1	sp|O64705|PP184_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002182 (NB-ARC), IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0043531 (ADP binding)
Niben101Scf00712g05032.1	sp|P85200|PRS6B_HELAN	*-*-	26S protease regulatory subunit 6B homolog	IPR003959 (ATPase, AAA-type, core), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf00851g04009.1	AT5G20950.1	*-**	Glycosyl hydrolase family protein LENGTH=624	IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf11812g00025.1	sp|Q6P5M2|WDR61_DANRE	***-	WD repeat-containing protein 61	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf06663g00020.1	AT4G38030.1	*-*-	Rhamnogalacturonate lyase family protein LENGTH=667	IPR008979 (Galactose-binding domain-like), IPR010325 (Rhamnogalacturonate lyase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf00466g02016.1	sp|Q6K641|IF4G2_ORYSJ	--*-	Eukaryotic translation initiation factor isoform 4G-2		
Niben101Scf01413g04006.1	sp|P0C5A3|DPNP_ORYSA	****	3'(2'),5'-bisphosphate nucleotidase	IPR000760 (Inositol monophosphatase)	GO:0006790 (sulfur compound metabolic process), GO:0008441 (3'(2'),5'-bisphosphate nucleotidase activity), GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf05559g03008.1	sp|Q9SY06|FAF1_ARATH	*-*-	Protein FANTASTIC FOUR 1	IPR021410 (The fantastic four family)	
Niben101Scf00496g01001.1	sp|Q9XF97|RL4_PRUAR	***-	60S ribosomal protein L4	IPR002136 (Ribosomal protein L4/L1e), IPR023574 (Ribosomal protein L4 domain), IPR025755 (60S ribosomal protein L4, C-terminal domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05346g03004.1	sp|A2RA63|MUB1_ASPNC	--*-	MYND-type zinc finger protein samB	IPR001810 (F-box domain), IPR002893 (Zinc finger, MYND-type), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06496g00003.1	AT5G07990.1	*-*-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00069g01007.1	sp|Q9LHP4|RCH2_ARATH	--*-	Receptor-like protein kinase 2		
Niben101Scf16733g00004.1	AT5G15740.1	***-	O-fucosyltransferase family protein LENGTH=508	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf02929g05092.1	ref|YP_004927590.1|	***-	orf101b (mitochondrion) [Brassica carinata] gb|AEH43605.1| orf101b [Brassica carinata]		
Niben101Scf08527g01009.1	sp|Q7SIA8|CUTA_THET8	***-	Divalent-cation tolerance protein CutA	IPR004323 (Divalent ion tolerance protein, CutA)	GO:0010038 (response to metal ion)
Niben101Scf16915g01011.1	sp|Q84KJ6|AMT31_ORYSJ	****	Ammonium transporter 3 member 1	IPR001905 (Ammonium transporter), IPR002229 (Blood group Rhesus C/E/D polypeptide), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf00963g02002.1	AT5G27380.1	****	glutathione synthetase 2 LENGTH=539	IPR005615 (Glutathione synthase, eukaryotic), IPR016185 (Pre-ATP-grasp domain)	GO:0004363 (glutathione synthase activity), GO:0005524 (ATP binding), GO:0006750 (glutathione biosynthetic process), GO:0016874 (ligase activity)
Niben101Scf00853g07005.1	sp|Q9FJX3|VDAC2_ARATH	****	Mitochondrial outer membrane protein porin 2	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0055085 (transmembrane transport)
Niben101Scf03202g13012.1	AT4G08250.1	***-	GRAS family transcription factor LENGTH=483	IPR005202 (Transcription factor GRAS), IPR030028 (Scarecrow-like protein 26/nodulation signalling pathway 2)	
Niben101Scf06774g02014.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf02159g01017.1	sp|Q0JF58|AGO4B_ORYSJ	*-*-	Protein argonaute 4B	IPR003100 (PAZ domain), IPR014811 (Domain of unknown function DUF1785)	GO:0005515 (protein binding)
Niben101Scf07405g05002.1	AT3G09410.1	***-	Pectinacetylesterase family protein LENGTH=427	IPR004963 (Protein notum homologue), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf09706g00011.1	AT1G72480.1	***-	Lung seven transmembrane receptor family protein LENGTH=509	IPR009637 (Transmembrane receptor, eukaryota)	GO:0016021 (integral component of membrane)
Niben101Scf01202g00004.1			Unknown protein		
Niben101Scf03535g01001.1	sp|Q9LGU6|METK3_ORYSJ	****	S-adenosylmethionine synthase 3	IPR002133 (S-adenosylmethionine synthetase)	GO:0004478 (methionine adenosyltransferase activity), GO:0005524 (ATP binding), GO:0006556 (S-adenosylmethionine biosynthetic process)
Niben101Scf03643g09014.1	sp|Q6IV77|TAZ_MACMU	*-*-	Tafazzin	IPR000872 (Tafazzin)	GO:0006644 (phospholipid metabolic process), GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf16416g03002.1	sp|Q9XHM1|EIF3C_MEDTR	****	Eukaryotic translation initiation factor 3 subunit C	IPR000717 (Proteasome component (PCI) domain), IPR008905 (Eukaryotic translation initiation factor 3 subunit C, N-terminal domain), IPR027516 (Eukaryotic translation initiation factor 3 subunit C)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005852 (eukaryotic translation initiation factor 3 complex), GO:0006413 (translational initiation), GO:0031369 (translation initiation factor binding)
Niben101Scf08167g05010.1	sp|Q9FZ96|PUP1_ARATH	***-	Purine permease 1	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf00126g03011.1	AT1G38131.1	***-	O-fucosyltransferase family protein LENGTH=589	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Ctg12676g00002.1	ref|XP_002533818.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF28571.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf10074g00003.1	AT1G55190.1	***-	PRA1 (Prenylated rab acceptor) family protein LENGTH=189	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf08156g01001.1	sp|C7FF04|PPO3_AGABI	--**	Polyphenol oxidase 3	IPR008922 (Uncharacterised domain, di-copper centre), IPR016213 (Polyphenol oxidase)	GO:0004097 (catechol oxidase activity), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0046148 (pigment biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf10007g01002.1	AT2G21940.4	***-	shikimate kinase 1 LENGTH=304	IPR000623 (Shikimate kinase/Threonine synthase-like 1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03791g02001.1			Unknown protein		
Niben101Scf08370g00007.1	sp|Q9FM65|FLA1_ARATH	***-	Fasciclin-like arabinogalactan protein 1	IPR000782 (FAS1 domain)	
Niben101Scf01605g00004.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05372g05017.1	sp|Q9KXR6|CARB_STRCO	***-	Carbamoyl-phosphate synthase large chain	IPR006275 (Carbamoyl-phosphate synthase, large subunit), IPR011607 (Methylglyoxal synthase-like domain), IPR011761 (ATP-grasp fold), IPR016185 (Pre-ATP-grasp domain)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0006807 (nitrogen compound metabolic process), GO:0008152 (metabolic process), GO:0046872 (metal ion binding)
Niben101Scf00742g01033.1	AT4G00990.1	***-	Transcription factor jumonji (jmjC) domain-containing protein LENGTH=840	IPR003347 (JmjC domain), IPR014977 (WRC)	
Niben101Scf07980g00010.1	AT3G54640.1	****	tryptophan synthase alpha chain LENGTH=312	IPR002028 (Tryptophan synthase, alpha chain), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004834 (tryptophan synthase activity), GO:0006568 (tryptophan metabolic process), GO:0008152 (metabolic process)
Niben101Scf00043g03015.1	sp|D7GG24|MSHD_PROFC	--**	Mycothiol acetyltransferase	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf05417g03028.1	AT4G11570.1	****	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=373	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf08390g03006.1	sp|Q94KL7|SILD_FORIN	****	Secoisolariciresinol dehydrogenase	IPR002198 (Short-chain dehydrogenase/reductase SDR), IPR003560 (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase)	GO:0008152 (metabolic process), GO:0008667 (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0019290 (siderophore biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf07742g02011.1	sp|Q6IWA9|CLE45_ARATH	-**-	CLAVATA3/ESR (CLE)-related protein 45		
Niben101Scf30199g00011.1	sp|P45745|DHBF_BACSU	--*-	Dimodular nonribosomal peptide synthase		
Niben101Scf08026g02008.1	sp|Q8S8V2|YCF2A_ATRBE	*-*-	Protein Ycf2 A	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf04283g04008.1	sp|Q5BPJ0|TBL11_ARATH	***-	Protein trichome birefringence-like 11	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf09170g01015.1	sp|F4I7L1|TRB4_ARATH	****	Telomere repeat-binding factor 4	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf00453g07008.1	sp|Q84K00|NAC78_ARATH	*-*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03714g05026.1			Unknown protein		
Niben101Scf04416g00015.1	ref|XP_002511712.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF50381.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07018g01004.1	AT3G06190.1	***-	BTB-POZ and MATH domain 2 LENGTH=406	IPR008974 (TRAF-like), IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf04950g00010.1	AT1G09320.1	*-*-	agenet domain-containing protein LENGTH=517	IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf03494g01004.1			Unknown protein		
Niben101Scf02494g12004.1	sp|Q9FHM4|MA653_ARATH	****	65-kDa microtubule-associated protein 3	IPR007145 (Microtubule-associated protein, MAP65/Ase1/PRC1)	GO:0000226 (microtubule cytoskeleton organization), GO:0000910 (cytokinesis), GO:0008017 (microtubule binding)
Niben101Scf04044g13022.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01876g01015.1	emb|CDY01946.1|	--*-	BnaC02g27810D [Brassica napus]		
Niben101Scf11940g00008.1	gb|AIW50761.1|	*-*-	aberrant panicle organization 1 protein, partial [Andropogon gayanus]	IPR011043 (Galactose oxidase/kelch, beta-propeller)	
Niben101Scf05566g02012.1	gb|ABF81450.1|	*-*-	NBS-LRR type disease resistance protein [Populus trichocarpa]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf06483g01005.1	AT4G20820.1	****	FAD-binding Berberine family protein LENGTH=532	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00684g02003.1	sp|Q54B65|SF3A2_DICDI	--*-	Splicing factor 3A subunit 2		
Niben101Scf03309g08025.1	sp|P19963|ALL1_OLEEU	***-	Major pollen allergen Ole e 1	IPR006041 (Pollen Ole e 1 allergen/extensin)	GO:0005615 (extracellular space)
Niben101Scf04813g02008.1	sp|Q9FIH9|CML37_ARATH	****	Calcium-binding protein CML37	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf05295g03021.1	sp|Q94CD8|E134_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 4	IPR012946 (X8 domain)	
Niben101Scf09906g01003.1	sp|P34102|PK3_DICDI	*-**	Protein kinase 3	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07199g01010.1	sp|Q6C3X7|DBP5_YARLI	****	ATP-dependent RNA helicase DBP5	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf06709g05005.1	gb|ABN09101.1|	****	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf01764g00011.1	sp|Q8RWM3|MED27_ARATH	***-	Mediator of RNA polymerase II transcription subunit 27	IPR021627 (Mediator complex, subunit Med27)	
Niben101Scf02647g00008.1	sp|Q9SFC7|FB135_ARATH	*-*-	F-box protein		
Niben101Scf07868g03002.1			Unknown protein		
Niben101Scf08687g00004.1	sp|Q9LSQ4|GH36_ARATH	***-	Indole-3-acetic acid-amido synthetase GH3.6	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf01942g05026.1	sp|Q05196|PABP5_ARATH	*-**	Polyadenylate-binding protein 5	IPR002004 (Polyadenylate-binding protein/Hyperplastic disc protein)	GO:0003723 (RNA binding)
Niben101Scf07284g02012.1	sp|P00243|FER_SYNY4	***-	Ferredoxin	IPR010241 (Ferredoxin [2Fe-2S], plant), IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0022900 (electron transport chain), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf07635g00006.1	sp|O47499|CYB_METSE	***-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal), IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf12017g00012.1	sp|Q9ATF5|RL18A_CASSA	***-	60S ribosomal protein L18a	IPR023573 (Ribosomal protein L18a/LX), IPR028877 (50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05627g01020.1	sp|Q6USK2|CERK_ARATH	****	Ceramide kinase	IPR001206 (Diacylglycerol kinase, catalytic domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf03823g02012.1	ref|NP_001057042.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf00646g09012.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005515 (protein binding)
Niben101Scf01372g09018.1	sp|P93735|ELIP1_ARATH	***-	Early light-induced protein 1, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf06305g01004.1	ref|XP_007035444.1|	*-*-	BRCT domain-containing DNA repair protein, putative isoform 5 [Theobroma cacao] gb|EOY06370.1| BRCT domain-containing DNA repair protein, putative isoform 5 [Theobroma cacao]		
Niben101Scf03531g00016.1	emb|CDX68330.1|	***-	BnaA07g23700D [Brassica napus]		
Niben101Scf07980g02004.1			Unknown protein		
Niben101Scf11646g02007.1	AT3G47520.1	****	malate dehydrogenase LENGTH=403	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf01291g04005.1	sp|B2HCX5|RL17_MYCMM	*-*-	50S ribosomal protein L17	IPR000456 (Ribosomal protein L17)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf13540g00003.1	AT3G15050.1	***-	IQ-domain 10 LENGTH=259	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf07493g00004.1	AT1G51538.1	*-*-	Aminotransferase-like, plant mobile domain family protein LENGTH=696	IPR006904 (Protein of unknown function DUF716 (TMEM45)), IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf38445g00002.1	sp|Q61011|GBB3_MOUSE	*-**	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf04053g03033.1	sp|B5REV7|MDH_SALG2	****	Malate dehydrogenase	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf03793g02001.1	sp|Q93VH6|GIF3_ARATH	***-	GRF1-interacting factor 3		
Niben101Scf03969g05012.1			Unknown protein		
Niben101Scf06926g08011.1	sp|F4J5M9|CLC3_ARATH	****	Clathrin light chain 3	IPR000996 (Clathrin light chain)	GO:0005198 (structural molecule activity), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030130 (clathrin coat of trans-Golgi network vesicle), GO:0030132 (clathrin coat of coated pit)
Niben101Scf20787g00014.1	tpg|DAA48790.1|	*-*-	TPA: MTD1 [Zea mays]		
Niben101Scf04191g00006.1	sp|Q39692|INV2_DAUCA	*-*-	Beta-fructofuranosidase, insoluble isoenzyme 2	IPR013148 (Glycosyl hydrolase family 32, N-terminal), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	
Niben101Scf08186g00012.1	AT1G53510.1	****	mitogen-activated protein kinase 18 LENGTH=615	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02909g00019.1	AT4G30710.1	*-*-	Family of unknown function (DUF566) LENGTH=644		
Niben101Scf01922g01004.1	sp|Q8S9L6|CRK29_ARATH	*-**	Cysteine-rich receptor-like protein kinase 29	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04279g04001.1	sp|Q1PF08|SCP22_ARATH	*-**	Serine carboxypeptidase-like 22	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf28904g00005.1	sp|Q9LFN5|GLR25_ARATH	*-**	Glutamate receptor 2.5	IPR001320 (Ionotropic glutamate receptor), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf01964g00002.1	sp|Q9PAH1|SUCC_XYLFA	***-	Succinyl-CoA ligase [ADP-forming] subunit beta	IPR013650 (ATP-grasp fold, succinyl-CoA synthetase-type), IPR016102 (Succinyl-CoA synthetase-like)	GO:0005524 (ATP binding)
Niben101Scf03815g00006.1	AT2G25920.1	***-	BEST Arabidopsis thaliana protein match is: 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein . LENGTH=280		
Niben101Scf02413g04011.1	ref|WP_004794099.1|	--*-	ABC transporter ATP-binding protein [Mycoplasma canis] gb|EIE41073.1| ABC transporter, ATP-binding protein [Mycoplasma canis PG 14]		
Niben101Scf05196g00017.1	AT1G75160.1	***-	Protein of unknown function (DUF620) LENGTH=395	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf01388g00004.1	sp|Q11207|PARP2_ARATH	***-	Poly [ADP-ribose] polymerase 2	IPR003034 (SAP domain), IPR004102 (Poly(ADP-ribose) polymerase, regulatory domain), IPR008893 (WGR domain), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain)	GO:0003950 (NAD+ ADP-ribosyltransferase activity), GO:0006471 (protein ADP-ribosylation)
Niben101Scf08151g00005.1	sp|Q51876|LEP_PHOLA	****	Signal peptidase I	IPR000223 (Peptidase S26A, signal peptidase I), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf02060g08010.1	emb|CDY68741.1|	***-	BnaA06g39590D [Brassica napus]	IPR007650 (Zf-FLZ domain)	
Niben101Scf06613g03007.1	sp|Q96FN4|CPNE2_HUMAN	*-*-	Copine-2	IPR002035 (von Willebrand factor, type A), IPR010734 (Copine)	
Niben101Scf02589g02001.1	sp|Q94469|G3P_DICDI	*-*-	Glyceraldehyde-3-phosphate dehydrogenase		
Niben101Scf07645g00006.1	AT2G07739.1	*-*-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf02103g00001.1	gb|AAT39304.2|	--*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf07741g02001.1	gb|AES90816.2|	--*-	AT hook motif DNA-binding family protein [Medicago truncatula]	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf02665g15003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04379g00001.1			Unknown protein		
Niben101Scf01991g01016.1	AT5G16140.1	****	Peptidyl-tRNA hydrolase family protein LENGTH=240	IPR001328 (Peptidyl-tRNA hydrolase)	GO:0004045 (aminoacyl-tRNA hydrolase activity)
Niben101Scf06078g00001.1	sp|A8SE78|RPOC2_CERDE	*-**	DNA-directed RNA polymerase subunit beta''	IPR007081 (RNA polymerase Rpb1, domain 5), IPR007083 (RNA polymerase Rpb1, domain 4)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf39216g00007.1	sp|Q9LTT8|VCS_ARATH	***-	Enhancer of mRNA-decapping protein 4	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf10262g00005.1	AT5G67385.1	***-	Phototropic-responsive NPH3 family protein LENGTH=604	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf06435g03018.1	sp|Q2IK81|EFG2_ANADE	*-*-	Elongation factor G 2	IPR000795 (Elongation factor, GTP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf05813g01018.1	sp|Q9LQ28|ERF22_ARATH	--*-	Ethylene-responsive transcription factor ERF022		
Niben101Scf12889g00001.1	sp|A6T7F1|FABH_KLEP7	*-*-	3-oxoacyl-[acyl-carrier-protein] synthase 3	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf07275g00012.1	AT5G47890.1	***-	NADH-ubiquinone oxidoreductase B8 subunit, putative LENGTH=97	IPR012336 (Thioredoxin-like fold), IPR016464 (NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2)	
Niben101Scf03817g03029.1	gb|EEZ33517.1|	*-*-	conserved hypothetical protein [Brucella sp. 83/13]		
Niben101Scf00975g01013.1	AT4G36180.1	***-	Leucine-rich receptor-like protein kinase family protein LENGTH=1136	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf01237g13026.1	AT5G05230.1	*-*-	RING/U-box superfamily protein LENGTH=363		
Niben101Scf05652g00010.1	sp|Q9LFC5|PP360_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00972g00009.1			Unknown protein		
Niben101Scf04494g00019.1	sp|Q94758|DYL1_SCHMA	***-	Dynein light chain	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Scf02929g04085.1	ref|XP_002531760.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF30616.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04663g05015.1	sp|A4FVJ7|RBM48_DANRE	*-**	RNA-binding protein 48	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06412g03016.1	sp|Q9LVQ0|PME31_ARATH	****	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf05750g00010.1	sp|P17730|G3P2_TRIKO	***-	Glyceraldehyde-3-phosphate dehydrogenase 2	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00536g05018.1	AT1G04780.1	***-	Ankyrin repeat family protein LENGTH=664	IPR020683 (Ankyrin repeat-containing domain), IPR021832 (Ankyrin repeat domain-containing protein 13)	GO:0005515 (protein binding)
Niben101Scf05056g00006.1			Unknown protein		
Niben101Scf11124g01013.1	sp|Q9SV60|XTH2_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 2	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf07034g01002.1	sp|Q9SD40|SRS1_ARATH	***-	Protein SHI RELATED SEQUENCE 1	IPR007818 (Protein of unknown function DUF702)	
Niben101Scf34484g00001.1	ref|NP_001043414.2|	*-*-	[Oryza sativa Japonica Group] dbj|BAF05328.2| [Oryza sativa Japonica Group]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf14372g00012.1	sp|B8APB5|ILI6_ORYSI	*-*-	Transcription factor ILI6		
Niben101Scf03100g01010.1			Unknown protein		
Niben101Scf13057g00013.1	sp|Q9VYX1|ENY2_DROME	*-**	Enhancer of yellow 2 transcription factor	IPR018783 (Transcription factor, enhancer of yellow 2)	GO:0000124 (SAGA complex), GO:0003713 (transcription coactivator activity), GO:0005643 (nuclear pore), GO:0006406 (mRNA export from nucleus), GO:0045893 (positive regulation of transcription, DNA-templated)
Niben101Scf06538g02008.1	AT2G44380.1	***-	Cysteine/Histidine-rich C1 domain family protein LENGTH=247	IPR011424 (C1-like)	GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05692g07035.1	AT4G37200.1	***-	Thioredoxin superfamily protein LENGTH=261	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02074g07077.1	sp|B2IUL2|ATPB_NOSP7	*-*-	ATP synthase subunit beta	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00998g04008.1	emb|CDY53615.1|	--*-	BnaA01g25580D [Brassica napus]		
Niben101Scf01294g07001.1	sp|P41099|RLA2_PARAR	--*-	60S acidic ribosomal protein P2	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf01460g02002.1	sp|B2GV22|PTSS2_RAT	****	Phosphatidylserine synthase 2	IPR004277 (Phosphatidyl serine synthase)	GO:0006659 (phosphatidylserine biosynthetic process)
Niben101Scf03169g04009.1	AT4G28500.1	***-	NAC domain containing protein 73 LENGTH=305	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00486g03004.1	sp|B4KRQ4|WDR48_DROMO	*-*-	WD repeat-containing protein 48 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf01418g03015.1	AT2G34160.1	****	Alba DNA/RNA-binding protein LENGTH=130	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Ctg11882g00001.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf31903g00003.1	sp|Q3MBE2|RS6_ANAVT	-**-	30S ribosomal protein S6	IPR000529 (Ribosomal protein S6), IPR014717 (Translation elongation factor EF1B/ribosomal protein S6)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf00079g00015.1	sp|Q3SWX0|NIPA2_BOVIN	****	Magnesium transporter NIPA2	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf15360g00006.1	dbj|BAF00138.1|	****	RNA-binding protein like [Arabidopsis thaliana]	IPR002344 (Lupus La protein), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0006396 (RNA processing), GO:0030529 (ribonucleoprotein complex)
Niben101Scf02375g00013.1	ref|NP_849739.1|	****	inactive poly [ADP-rib [Arabidopsis thaliana] gb|AEE31453.1| inactive poly [ADP-ribose] polymerase RCD1 [Arabidopsis thaliana]	IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR022003 (RST domain of plant C-terminal)	GO:0003950 (NAD+ ADP-ribosyltransferase activity)
Niben101Scf02030g00006.1	emb|CDY70591.1|	-**-	BnaCnng68960D [Brassica napus]		
Niben101Scf06315g00001.1	sp|Q8S8X3|YCF3_ATRBE	***-	Photosystem I assembly protein Ycf3	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01502g02003.1	sp|Q4PE39|SEC23_USTMA	****	Protein transport protein SEC23	IPR002035 (von Willebrand factor, type A), IPR006895 (Zinc finger, Sec23/Sec24-type), IPR006896 (Sec23/Sec24, trunk domain), IPR006900 (Sec23/Sec24, helical domain), IPR012990 (Sec23/Sec24 beta-sandwich), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0006886 (intracellular protein transport), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0008270 (zinc ion binding), GO:0030127 (COPII vesicle coat)
Niben101Scf04362g02009.1	sp|Q9C652|RBP1_ARATH	--**	RNA-binding protein 1	IPR001878 (Zinc finger, CCHC-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf04610g07023.1	ref|XP_002510381.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF52568.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01300g01009.1	ref|XP_003618320.1|	*-*-	Phytoalexin-deficient 4-2 protein [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf01785g07003.1	AT2G34410.1	*-*-	O-acetyltransferase family protein LENGTH=540	IPR012419 (Cas1p 10 TM acyl transferase domain)	
Niben101Scf00895g00024.1	sp|Q8LFP1|PRA1H_ARATH	--*-	PRA1 family protein H		
Niben101Scf01432g03006.1	sp|Q9SLN1|FPP7_ARATH	*-*-	Filament-like plant protein 7	IPR008587 (Filament-like plant protein)	
Niben101Scf04607g06007.1	sp|Q38914|ANT_ARATH	--*-	AP2-like ethylene-responsive transcription factor ANT		
Niben101Scf01285g03015.1			Unknown protein		
Niben101Scf00202g07001.1	sp|Q0A7E4|DNAJ_ALKEH	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR026894 (DNAJ-containing protein, X-domain)	
Niben101Scf08535g04001.1	sp|Q80T74|KLH29_MOUSE	*-*-	Kelch-like protein 29	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf01289g09016.1	ref|WP_017309160.1|	****	Ureidoglycolate hydrolase [Fischerella sp. PCC 9339]	IPR011051 (RmlC-like cupin domain)	GO:0004848 (ureidoglycolate hydrolase activity)
Niben101Scf05819g00007.1	sp|Q9LX65|VATH_ARATH	****	V-type proton ATPase subunit H	IPR004908 (ATPase, V1 complex, subunit H)	GO:0000221 (vacuolar proton-transporting V-type ATPase, V1 domain), GO:0005488 (binding), GO:0005515 (protein binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf05938g01009.1	sp|O75554|WBP4_HUMAN	*-**	WW domain-binding protein 4	IPR003604 (Zinc finger, U1-type), IPR013085 (Zinc finger, U1-C type)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf01767g03012.1	gb|ADY77002.1|	****	iron-sulfur cluster assembly protein NFU4 [Ipomoea batatas] gb|ADY77005.1| iron-sulfur cluster assembly protein NFU4 [Ipomoea batatas]	IPR017065 (HIRA-interacting protein 5)	GO:0005506 (iron ion binding), GO:0005737 (cytoplasm), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf10550g00001.1			Unknown protein		
Niben101Scf02914g00002.1	sp|Q65FT5|MENE_BACLD	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf06078g01010.1	AT5G02890.1	*-**	HXXXD-type acyl-transferase family protein LENGTH=353	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03453g03001.1	sp|Q0VD22|STK33_BOVIN	*-**	Serine/threonine-protein kinase 33	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01427g00011.1	sp|Q3ZBR5|TTC1_BOVIN	*-*-	Tetratricopeptide repeat protein 1	IPR000270 (Phox/Bem1p), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf12582g01003.1	AT3G08890.1	***-	Protein of unknown function, DUF538 LENGTH=170	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf01729g00004.1	ref|WP_009634070.1|	***-	Protein of unknown function (DUF2499) [Synechocystis sp. PCC 7509]	IPR019634 (Uncharacterised protein family Ycf49)	
Niben101Scf10162g01011.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf13421g00011.1	AT3G08890.1	***-	Protein of unknown function, DUF538 LENGTH=170	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf12841g03021.1	sp|Q9C857|GDL16_ARATH	--*-	GDSL esterase/lipase		
Niben101Scf02738g01012.1	AT1G61600.1	***-	Protein of unknown function (DUF1262) LENGTH=421	IPR010683 (Protein of unknown function DUF1262)	
Niben101Scf00031g00002.1	sp|Q8VDI9|ALG9_MOUSE	***-	Alpha-1,2-mannosyltransferase ALG9	IPR005599 (GPI mannosyltransferase)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf02430g01003.1			Unknown protein		
Niben101Scf25455g00006.1	AT5G60720.1	***-	Protein of unknown function, DUF547 LENGTH=691	IPR006869 (Domain of unknown function DUF547)	
Niben101Scf03385g06010.1	sp|Q39266|ZFP7_ARATH	***-	Zinc finger protein 7	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf01866g01026.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01240g12007.1	sp|Q07E28|CTTB2_NEONE	*-**	Cortactin-binding protein 2	IPR014710 (RmlC-like jelly roll fold), IPR020683 (Ankyrin repeat-containing domain), IPR021789 (Potassium channel, plant-type)	GO:0005515 (protein binding)
Niben101Scf07778g03018.1	sp|Q31IS8|ERPA_THICR	*-**	Iron-sulfur cluster insertion protein ErpA	IPR000361 (FeS cluster biogenesis), IPR016092 (FeS cluster insertion protein)	GO:0005198 (structural molecule activity), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf26564g00003.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00938g01016.1	AT5G41040.1	****	HXXXD-type acyl-transferase family protein LENGTH=457	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf21007g00011.1	AT5G61480.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=1041	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02738g01016.1	sp|Q6NKX1|PROD2_ARATH	****	Proline dehydrogenase 2, mitochondrial	IPR015659 (Proline oxidase), IPR029041 (FAD-linked oxidoreductase-like)	GO:0004657 (proline dehydrogenase activity), GO:0006562 (proline catabolic process)
Niben101Scf06358g00015.1	sp|Q7XTQ5|MEX1_ORYSJ	***-	Maltose excess protein 1-like, chloroplastic		
Niben101Scf07741g02003.1	AT1G51630.1	***-	O-fucosyltransferase family protein LENGTH=423	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf00311g03009.1	sp|P61782|HIS51_METMP	*-**	Imidazole glycerol phosphate synthase subunit HisH 1	IPR006062 (Histidine biosynthesis), IPR010139 (Imidazole glycerol phosphate synthase, subunit H), IPR014640 (Imidazole glycerol phosphate synthase HisHF), IPR029062 (Class I glutamine amidotransferase-like)	GO:0000105 (histidine biosynthetic process), GO:0000107 (imidazoleglycerol-phosphate synthase activity), GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0008152 (metabolic process), GO:0016763 (transferase activity, transferring pentosyl groups), GO:0016833 (oxo-acid-lyase activity)
Niben101Scf09433g01013.1	gb|KEH22373.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf03392g00007.1	ref|XP_003608059.1|	*-*-	DNA polymerase I [Medicago truncatula]		
Niben101Scf03441g00009.1	AT5G05550.2	***-	sequence-specific DNA binding transcription factors LENGTH=249		
Niben101Scf13029g03005.1	sp|Q96509|PER55_ARATH	****	Peroxidase 55	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08088g04008.1			Unknown protein		
Niben101Scf06436g02007.1	AT1G01760.1	*-*-	adenosine deaminases;RNA binding;RNA binding;adenosine deaminases LENGTH=420		
Niben101Scf02045g04019.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf04953g12001.1	sp|Q9FYP9|IMA2_ORYSJ	***-	Importin subunit alpha-2	IPR016024 (Armadillo-type fold), IPR024931 (Importin subunit alpha)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006606 (protein import into nucleus), GO:0008565 (protein transporter activity)
Niben101Scf02792g01023.1	sp|O43396|TXNL1_HUMAN	*-*-	Thioredoxin-like protein 1	IPR005746 (Thioredoxin), IPR008979 (Galactose-binding domain-like)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02455g03022.1	sp|Q18JG3|SYP_HALWD	****	Proline--tRNA ligase	IPR002316 (Proline-tRNA ligase, class IIa), IPR017449 (Prolyl-tRNA synthetase, class II)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004827 (proline-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006433 (prolyl-tRNA aminoacylation)
Niben101Scf08792g00007.1	sp|Q9ATF5|RL18A_CASSA	***-	60S ribosomal protein L18a	IPR023573 (Ribosomal protein L18a/LX), IPR028877 (50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02829g00005.1	AT1G03070.1	***-	Bax inhibitor-1 family protein LENGTH=247	IPR006214 (Bax inhibitor 1-related)	
Niben101Scf00303g00003.1	sp|Q9FGK4|B561J_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR017214 (Uncharacterised conserved protein UCP037471)	GO:0016021 (integral component of membrane)
Niben101Scf03484g05007.1	sp|Q9SRM9|ALMT8_ARATH	****	Aluminum-activated malate transporter 8	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf01513g00009.1			Unknown protein		
Niben101Scf09564g00009.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09516g00020.1	sp|O42993|FKBP_SCHPO	*-*-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf04119g03007.1	sp|Q8L5Y6|CAND1_ARATH	***-	Cullin-associated NEDD8-dissociated protein 1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01502g02007.1	sp|Q8VXX4|RFC3_ARATH	***-	Replication factor C subunit 3	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf09791g00001.1	gb|EJY83874.1|	*-*-	RING-finger-containing E3 ubiquitin ligase [Oxytricha trifallax]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02566g01003.1	sp|Q9FIX3|PP407_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00551g02008.1	sp|Q9M0G0|GAGT3_ARATH	****	Gamma-glutamyltranspeptidase 3	IPR000101 (Gamma-glutamyltranspeptidase), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0003840 (gamma-glutamyltransferase activity), GO:0006749 (glutathione metabolic process)
Niben101Scf00111g00009.1	sp|Q9LZC5|GDL73_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf13387g00028.1	sp|Q93ZH2|NFYA3_ARATH	*-**	Nuclear transcription factor Y subunit A-3	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0016602 (CCAAT-binding factor complex)
Niben101Scf02714g06021.1	sp|P52948|NUP98_HUMAN	*-*-	Nuclear pore complex protein Nup98-Nup96		
Niben101Scf00571g06006.1	sp|E0X9N4|C3H69_ARATH	*-**	Zinc finger CCCH domain-containing protein 69	IPR000571 (Zinc finger, CCCH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf01993g06008.1			Unknown protein		
Niben101Scf04407g02027.1	sp|Q8H157|PTR19_ARATH	***-	Protein NRT1/ PTR FAMILY 4.6	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03817g14005.1	AT3G52060.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=346	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf05073g02002.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf07693g00001.1	sp|A7NY33|PER4_VITVI	****	Peroxidase 4	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02625g01002.1	sp|A6LXP5|NUON_CLOB8	*-*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf06408g01007.1	AT3G51850.1	****	calcium-dependent protein kinase 13 LENGTH=528	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00991g06001.1	sp|Q9HDW7|ATC2_SCHPO	****	Calcium-transporting ATPase 2	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain), IPR024750 (Calcium-transporting P-type ATPase, N-terminal autoinhibitory domain)	GO:0000166 (nucleotide binding), GO:0005388 (calcium-transporting ATPase activity), GO:0005516 (calmodulin binding), GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding), GO:0070588 (calcium ion transmembrane transport)
Niben101Scf01350g07007.1	AT2G15680.1	****	Calcium-binding EF-hand family protein LENGTH=187	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02613g05005.1			Unknown protein		
Niben101Scf30946g00003.1	gb|ABY88578.1|	***-	NHL1, partial [Arabidopsis thaliana]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf00128g03003.1	sp|P16924|P4HA1_CHICK	*-*-	Prolyl 4-hydroxylase subunit alpha-1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01718g02003.1	sp|Q9LNU4|PSD3A_ARATH	****	26S proteasome non-ATPase regulatory subunit 3 homolog A	IPR000717 (Proteasome component (PCI) domain), IPR013143 (PCI/PINT associated module), IPR013586 (26S proteasome regulatory subunit, C-terminal)	GO:0000502 (proteasome complex), GO:0005515 (protein binding), GO:0030234 (enzyme regulator activity), GO:0042176 (regulation of protein catabolic process)
Niben101Scf05310g00006.1	AT2G01080.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=231	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf09960g01002.1	sp|Q8H5F8|ADPRM_ORYSJ	***-	Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Ctg14829g00003.1			Unknown protein		
Niben101Scf01463g00010.1	AT3G20270.1	*-**	lipid-binding serum glycoprotein family protein LENGTH=722	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00342g00007.1	sp|P83947|PME1_FICPW	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf04664g01003.1	AT4G38970.1	****	fructose-bisphosphate aldolase 2 LENGTH=398	IPR000741 (Fructose-bisphosphate aldolase, class-I), IPR013785 (Aldolase-type TIM barrel), IPR029768 (Fructose-bisphosphate aldolase class-I active site)	GO:0003824 (catalytic activity), GO:0004332 (fructose-bisphosphate aldolase activity), GO:0006096 (glycolytic process)
Niben101Ctg13703g00001.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02562g04001.1	sp|P21616|AVP_VIGRR	****	Pyrophosphate-energized vacuolar membrane proton pump	IPR004131 (Pyrophosphate-energised proton pump)	GO:0004427 (inorganic diphosphatase activity), GO:0009678 (hydrogen-translocating pyrophosphatase activity), GO:0015992 (proton transport), GO:0016020 (membrane)
Niben101Scf01090g03004.1	ref|XP_007010390.1|	*-*-	Retrotransp [Theobroma cacao]	IPR026960 (Reverse transcriptase zinc-binding domain)	
Niben101Scf02526g02015.1	sp|Q9T096|YIPL6_ARATH	***-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf00080g04011.1	ref|XP_003589054.1|	*-*-	Exocyst complex component [Medicago truncatula] gb|AES59305.1| exocyst subunit exo70 family protein [Medicago truncatula]		
Niben101Scf23814g00036.1	ref|XP_002530720.1|	-**-	Protein SCRL10 precursor, putative [Ricinus communis] gb|EEF31674.1| Protein SCRL10 precursor, putative [Ricinus communis]		
Niben101Scf01658g02011.1	sp|Q9FLJ4|PP440_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03263g08013.1	sp|P25141|ADH1_PETHY	****	Alcohol dehydrogenase 1	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR016040 (NAD(P)-binding domain)	GO:0006069 (ethanol oxidation), GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0051903 (S-(hydroxymethyl)glutathione dehydrogenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05203g05022.1	AT3G47670.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=276	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf13411g05003.1	sp|A7RP64|PNO1_NEMVE	****	RNA-binding protein pno1	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf07203g02006.1	sp|O22230|HSFB3_ARATH	****	Heat stress transcription factor B-3	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05819g00008.1	sp|Q9SXD8|PPR90_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR004575 (Cdk-activating kinase assembly factor MAT1/Tfb3), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0007049 (cell cycle)
Niben101Scf04451g00026.1	sp|Q9Z9C4|SODM_CHLPN	****	Superoxide dismutase [Mn]	IPR001189 (Manganese/iron superoxide dismutase)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04021g06007.1			Unknown protein		
Niben101Scf12320g02010.1	AT5G12400.1	****	DNA binding;zinc ion binding;DNA binding LENGTH=1602	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR018501 (DDT domain superfamily)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05584g03008.1	sp|Q9M153|GDL61_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Ctg14045g00001.1	sp|F4JI46|RGAP2_ARATH	*-*-	Rho GTPase-activating protein 2	IPR008936 (Rho GTPase activation protein)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf01228g02002.1	sp|Q9FXJ1|GDL6_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01432g06005.1	AT5G67130.1	***-	PLC-like phosphodiesterases superfamily protein LENGTH=426	IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain)	GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Scf00571g08005.1	sp|Q54X41|SOSSB_DICDI	***-	SOSS complex subunit B homolog	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf09575g01009.1	sp|O22047|CHSE_IPOPU	***-	Chalcone synthase E	IPR011141 (Polyketide synthase, type III), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0009058 (biosynthetic process), GO:0016746 (transferase activity, transferring acyl groups), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03100g01013.1	gb|AES60213.2|	*-**	peptide transporter [Medicago truncatula]	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf10366g00014.1	AT5G62790.2	****	1-deoxy-D-xylulose 5-phosphate reductoisomerase LENGTH=497	IPR003821 (1-deoxy-D-xylulose 5-phosphate reductoisomerase), IPR016040 (NAD(P)-binding domain), IPR026877 (DXP reductoisomerase C-terminal domain)	GO:0005515 (protein binding), GO:0008299 (isoprenoid biosynthetic process), GO:0030604 (1-deoxy-D-xylulose-5-phosphate reductoisomerase activity), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process), GO:0070402 (NADPH binding)
Niben101Scf10124g03002.1	AT5G52580.2	***-	RabGAP/TBC domain-containing protein LENGTH=690	IPR000195 (Rab-GTPase-TBC domain), IPR021935 (Domain of unknown function DUF3548)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf00520g12004.1	sp|Q6IP06|STK3_XENLA	****	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03253g02009.1	AT5G12470.1	***-	Protein of unknown function (DUF3411) LENGTH=386	IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf03628g14020.1	AT1G26480.1	***-	general regulatory factor 12 LENGTH=268	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf00015g04024.1	emb|CDX79898.1|	*-*-	BnaA05g02580D [Brassica napus]		
Niben101Scf17764g01001.1	AT2G18500.1	*-*-	ovate family protein 7 LENGTH=315	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf03515g00083.1			Unknown protein		
Niben101Scf03255g00011.1			Unknown protein		
Niben101Scf02306g02017.1	sp|A6TB06|RSMF_KLEP7	*-**	Ribosomal RNA small subunit methyltransferase F	IPR023267 (RNA (C5-cytosine) methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf03714g04012.1	sp|P53756|PDR18_YEAST	****	ABC transporter ATP-binding protein/permease PDR18	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf05717g03002.1			Unknown protein		
Niben101Scf09548g00025.1	sp|Q9LZ00|MED4_ARATH	*-**	Mediator of RNA polymerase II transcription subunit 4	IPR019258 (Mediator complex, subunit Med4)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf24029g00002.1	sp|A7QEU4|PER5_VITVI	***-	Peroxidase 5	IPR010255 (Haem peroxidase)	
Niben101Scf00798g00001.1	emb|CDY19340.1|	***-	BnaC05g08490D [Brassica napus]		
Niben101Scf00825g04002.1	sp|Q5ZUH9|MSBA_LEGPH	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf02240g09007.1	ref|XP_002531742.1|	--*-	ATP synthase alpha subunit mitochondrial, putative [Ricinus communis] gb|EEF30662.1| ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]		
Niben101Scf02979g06007.1	sp|Q8WTW3|COG1_HUMAN	***-	Conserved oligomeric Golgi complex subunit 1		
Niben101Scf07508g05002.1	sp|Q5TB80|CE162_HUMAN	--*-	Centrosomal protein of 162 kDa		
Niben101Scf01413g01004.1	sp|P52409|E13B_WHEAT	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02197g00002.1	sp|P61017|RAB4B_CANFA	***-	Ras-related protein Rab-4B	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf10328g00011.1	sp|Q8VZU2|SY132_ARATH	***-	Syntaxin-132	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf01240g11006.1	sp|Q9XGW1|AGO10_ARATH	***-	Protein argonaute 10	IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf02159g01019.1	gb|KEH31737.1|	****	nucleotide-binding protein [Medicago truncatula]	IPR013923 (Autophagy-related protein 16), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf01166g01034.1	sp|C5M5D9|CCM1_CANTT	--*-	Mitochondrial group I intron splicing factor CCM1		
Niben101Scf04953g09009.1	ref|XP_002525169.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37135.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf23113g00010.1	sp|Q28FH2|NTKL_XENTR	***-	N-terminal kinase-like protein	IPR011009 (Protein kinase-like domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06822g02009.1	AT4G17800.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=292	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf00851g06039.1	sp|Q9FIX3|PP407_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00421g01001.1	emb|CDY25548.1|	***-	BnaC09g11730D [Brassica napus]	IPR008511 (Protein BYPASS-related)	
Niben101Scf01124g23004.1	ref|XP_002526741.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF35655.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01214g00005.1	sp|O14435|GBB_CRYPA	*-**	Guanine nucleotide-binding protein subunit beta	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf00536g03001.1	AT2G31040.1	***-	ATP synthase protein I -related LENGTH=350		
Niben101Scf04641g02008.1	sp|Q54FU9|MCFW_DICDI	***-	Mitochondrial substrate carrier family protein W	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf13394g00032.1	AT5G60750.1	*-*-	CAAX amino terminal protease family protein LENGTH=347		
Niben101Scf09459g00002.1	sp|P0A3V1|SLEB_BACCE	--*-	Spore cortex-lytic enzyme	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain), IPR002477 (Peptidoglycan binding-like)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf04673g00004.1	sp|Q94KU1|6PGD1_SPIOL	****	6-phosphogluconate dehydrogenase, decarboxylating 1	IPR006113 (6-phosphogluconate dehydrogenase, decarboxylating), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050661 (NADP binding), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02027g00011.1	sp|A8XYZ2|SDHF2_CAEBR	--*-	Succinate dehydrogenase assembly factor 2, mitochondrial	IPR005631 (Flavinator of succinate dehydrogenase)	
Niben101Scf00236g00005.1	sp|Q3B8G0|CA123_XENLA	***-	UPF0587 protein C1orf123 homolog	IPR008584 (Protein of unknown function DUF866, eukaryotic)	
Niben101Scf08560g01001.1	sp|Q9LFT1|TBL21_ARATH	***-	Protein trichome birefringence-like 21	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	GO:0005794 (Golgi apparatus), GO:0010411 (xyloglucan metabolic process), GO:0016413 (O-acetyltransferase activity)
Niben101Scf12830g00008.1	sp|Q9LFT1|TBL21_ARATH	*-*-	Protein trichome birefringence-like 21	IPR006573 (NEUZ domain), IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf38767g00014.1	sp|P05488|RT13_TOBAC	*-*-	Ribosomal protein S13, mitochondrial		
Niben101Scf09560g00009.1	sp|C3PDM2|GCSH_BACAA	****	Glycine cleavage system H protein	IPR002930 (Glycine cleavage system H-protein)	GO:0005960 (glycine cleavage complex), GO:0019464 (glycine decarboxylation via glycine cleavage system)
Niben101Scf07436g00020.1	sp|P36106|BYE1_YEAST	--*-	Transcription factor BYE1		
Niben101Scf08706g02019.1	gb|ABD65034.1|	*-*-	Ulp1 protease family protein [Brassica oleracea]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf14151g00016.1	sp|Q9FGY4|FB341_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf12928g01009.1	ref|XP_008859033.1|	--*-	replication factor A protein 1, putative [Entamoeba nuttalli P19] gb|EKE38631.1| replication factor A protein 1, putative [Entamoeba nuttalli P19]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf07635g00003.1	sp|P46300|RS4_SOLTU	*-*-	40S ribosomal protein S4	IPR000876 (Ribosomal protein S4e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06840g00009.1	sp|A1XFZ7|RK2_NUPAD	****	50S ribosomal protein L2, chloroplastic	IPR002171 (Ribosomal protein L2)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit), GO:0016740 (transferase activity)
Niben101Scf02725g02025.1	AT3G14570.1	****	glucan synthase-like 4 LENGTH=1976	IPR003440 (Glycosyl transferase, family 48), IPR023175 (Vacuolar protein sorting-associate protein Vta1/Callose synthase, N-terminal domain), IPR026899 (1,3-beta-glucan synthase subunit FKS1-like, domain-1)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf01942g05023.1	ref|XP_002527089.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF35252.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06305g01001.1	ref|XP_003594026.1|	****	E3 ubiquitin-protein ligase MARCH1 [Medicago truncatula] gb|AES64277.1| zinc finger protein [Medicago truncatula]	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf03862g03004.1	sp|Q9FNA9|PDAT1_ARATH	****	Phospholipid:diacylglycerol acyltransferase 1	IPR003386 (Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0008374 (O-acyltransferase activity)
Niben101Scf06369g02017.1	sp|Q7XJ98|KATAM_ARATH	*-*-	Xyloglucan galactosyltransferase KATAMARI1	IPR004263 (Exostosin-like)	
Niben101Scf01358g00007.1	AT5G19010.1	*-**	mitogen-activated protein kinase 16 LENGTH=567	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00797g02006.1	AT3G09100.2	*-**	mRNA capping enzyme family protein LENGTH=672	IPR001339 (mRNA capping enzyme)	GO:0004484 (mRNA guanylyltransferase activity), GO:0006370 (7-methylguanosine mRNA capping), GO:0006397 (mRNA processing)
Niben101Scf06745g00002.1	sp|B8HPS9|RNH_CYAP4	--**	Ribonuclease H	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Ctg03313g00001.1	AT2G42940.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=257	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf02605g02001.1	AT4G10270.1	***-	Wound-responsive family protein LENGTH=90	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf01025g03008.1	emb|CDY07587.1|	***-	BnaC06g14770D [Brassica napus]		
Niben101Scf04754g02006.1	AT3G58800.1	***-	unknown protein; Has 75 Blast hits to 75 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 17; Other Eukaryotes - 5 (source: NCBI BLink). LENGTH=344	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Ctg05148g00001.1	sp|Q9SKG5|SERK4_ARATH	*-*-	Somatic embryogenesis receptor kinase 4	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02706g03008.1	gb|ADL36873.1|	*-*-	At1g62390-like protein [Arabidopsis lyrata subsp. lyrata]	IPR000270 (Phox/Bem1p), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00177g00009.1			Unknown protein		
Niben101Scf08127g10005.1	emb|CDY69512.1|	***-	BnaAnng30650D [Brassica napus]		
Niben101Scf00415g00003.1	sp|O22768|UNE12_ARATH	***-	Transcription factor UNE12	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03076g01025.1	AT1G31160.1	***-	HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 LENGTH=187	IPR001310 (Histidine triad (HIT) protein), IPR011146 (HIT-like domain)	GO:0003824 (catalytic activity)
Niben101Scf22566g00017.1	sp|O23144|PPI1_ARATH	****	Proton pump-interactor 1	IPR029669 (Proton pump-interactor)	GO:0005783 (endoplasmic reticulum), GO:0005886 (plasma membrane), GO:0010155 (regulation of proton transport)
Niben101Scf05005g04004.1	sp|G2K265|CLPB_LISM4	--*-	Chaperone protein ClpB	IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf10881g00060.1	sp|Q00506|NU4M_PHOVI	*-*-	NADH-ubiquinone oxidoreductase chain 4	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf08235g00012.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf21327g00004.1			Unknown protein		
Niben101Scf04003g06002.1			Unknown protein		
Niben101Ctg16051g00002.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01444g02020.1	AT3G53580.1	****	diaminopimelate epimerase family protein LENGTH=362	IPR001653 (Diaminopimelate epimerase, DapF)	GO:0008837 (diaminopimelate epimerase activity), GO:0009089 (lysine biosynthetic process via diaminopimelate)
Niben101Scf05437g06002.1	sp|B2IKL7|TRPC_BEII9	****	Indole-3-glycerol phosphate synthase	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004425 (indole-3-glycerol-phosphate synthase activity), GO:0006568 (tryptophan metabolic process), GO:0008152 (metabolic process)
Niben101Scf03283g02006.1	AT5G19450.1	*-**	calcium-dependent protein kinase 19 LENGTH=533	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf05272g00014.1	AT5G11730.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=386	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf01703g02006.1	sp|A7X2Y2|GRPE_STAA1	***-	Protein GrpE	IPR000740 (GrpE nucleotide exchange factor)	GO:0000774 (adenyl-nucleotide exchange factor activity), GO:0006457 (protein folding), GO:0042803 (protein homodimerization activity), GO:0051087 (chaperone binding)
Niben101Scf01300g02003.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01426g00005.1			Unknown protein		
Niben101Scf05761g01007.1	emb|CDY42438.1|	***-	BnaC02g22700D [Brassica napus]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf07027g04004.1	sp|P48981|BGAL_MALDO	*-*-	Beta-galactosidase	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04249g00001.1	AT2G40860.1	*-**	protein kinase family protein / protein phosphatase 2C ( PP2C) family protein LENGTH=658	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR011009 (Protein kinase-like domain)	GO:0003824 (catalytic activity), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00571g10021.1			Unknown protein		
Niben101Scf02847g00014.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf00605g01008.1	sp|Q9SZD1|TCX5_ARATH	*-*-	Protein tesmin/TSO1-like CXC 5		
Niben101Scf00155g01009.1	sp|Q6D437|MSBA_PECAS	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf00481g03002.1	sp|O24160|TGA21_TOBAC	****	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf10306g00031.1	sp|O82013|HSP21_SOLPE	*-*-	17.3 kDa class II heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf05494g00010.1			Unknown protein		
Niben101Scf18577g00010.1	sp|Q2MIC5|YCF2_SOLBU	*-*-	Protein Ycf2		
Niben101Scf03128g08001.1	gb|ABF94033.1|	--*-	monooxygenase, putative, expressed [Oryza sativa Japonica Group]		
Niben101Scf01247g04005.1	sp|O42929|DENR_SCHPO	*-**	Translation machinery-associated protein 22	IPR001950 (Translation initiation factor SUI1)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf07429g00004.1	sp|Q8VZU2|SY132_ARATH	--*-	Syntaxin-132		
Niben101Scf01395g05009.1	sp|O64759|CAAT5_ARATH	****	Cationic amino acid transporter 5	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Ctg10350g00002.1	gb|ABX46134.1|	***-	blight-associated protein P12, partial [Citrus unshiu]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf01689g07012.1	sp|Q8DDQ2|TATA_VIBVU	-***	Sec-independent protein translocase protein TatA	IPR003369 (Sec-independent protein translocase protein TatA/B/E), IPR003998 (Twin-arginine translocation protein TatB-like)	GO:0005886 (plasma membrane), GO:0008565 (protein transporter activity), GO:0009306 (protein secretion), GO:0015031 (protein transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf00526g03012.1	sp|Q850K7|EXLB1_ORYSJ	***-	Expansin-like B1	IPR007117 (Expansin, cellulose-binding-like domain), IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf02740g04003.1	AT5G38200.1	****	Class I glutamine amidotransferase-like superfamily protein LENGTH=436	IPR011697 (Peptidase C26), IPR029062 (Class I glutamine amidotransferase-like)	GO:0006541 (glutamine metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf03576g01039.1	sp|P38935|SMBP2_HUMAN	***-	DNA-binding protein SMUBP-2	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01338g03011.1	ref|XP_002524397.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38008.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04827g01002.1	emb|CDX75903.1|	--*-	BnaC03g39860D [Brassica napus]		
Niben101Scf03469g04004.1	AT3G22680.1	****	RNA-DIRECTED DNA METHYLATION 1 LENGTH=163	IPR015270 (Protein RDM1)	GO:0005634 (nucleus), GO:0044030 (regulation of DNA methylation)
Niben101Scf06153g00010.1	sp|Q5HQR3|GCSH_STAEQ	****	Glycine cleavage system H protein	IPR002930 (Glycine cleavage system H-protein)	GO:0005960 (glycine cleavage complex), GO:0019464 (glycine decarboxylation via glycine cleavage system)
Niben101Scf05676g06014.1	gb|KDD74983.1|	****	GTP-binding elongation factor EF-Tu/EF-1A [Helicosporidium sp. ATCC 50920]	IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf01374g04004.1	AT3G16060.1	****	ATP binding microtubule motor family protein LENGTH=684	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf02108g02017.1	sp|Q8FDQ2|KPSF_ECOL6	****	Arabinose 5-phosphate isomerase KpsF	IPR004800 (Phosphosugar isomerase, KdsD/KpsF-type)	GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf07841g01012.1			Unknown protein		
Niben101Scf09372g01018.1	AT1G13340.1	***-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=409	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf06266g00010.1	AT3G03690.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=378	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf00872g00006.1			Unknown protein		
Niben101Scf01655g01025.1	gb|KEH18842.1|	****	ARID/bright DNA-binding domain protein [Medicago truncatula]	IPR001606 (ARID DNA-binding domain)	GO:0003677 (DNA binding)
Niben101Scf09906g01002.1	sp|Q9LZV3|MAN6_ARATH	***-	Mannan endo-1,4-beta-mannosidase 6	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03223g04012.1	sp|Q5P7B7|DER_AROAE	--*-	GTPase Der	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf05304g10018.1	sp|A2YEZ6|SAP8_ORYSI	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	IPR000058 (Zinc finger, AN1-type), IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf03706g02007.1	sp|Q05967|PGLR_TOBAC	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00571g05015.1	sp|Q28I80|YLAT2_XENTR	-***	Y+L amino acid transporter 2	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf00149g05002.1			Unknown protein		
Niben101Scf00906g00003.1	AT3G52790.1	***-	peptidoglycan-binding LysM domain-containing protein LENGTH=109	IPR018392 (LysM domain)	
Niben101Scf00043g03016.1	ref|NP_001063452.2|	--*-	[Oryza sativa Japonica Group] dbj|BAF25366.2| [Oryza sativa Japonica Group]		
Niben101Scf02639g04006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04433g02003.1	dbj|BAD83480.2|	*-*-	NADH dehydrogenase subunit 4 (mitochondrion) [Nicotiana tabacum]		
Niben101Scf01203g01008.1	sp|Q94C70|NAT2_ARATH	****	Nucleobase-ascorbate transporter 2	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01418g02005.1	AT1G72510.1	*-*-	Protein of unknown function (DUF1677) LENGTH=165	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf01922g01003.1	sp|Q66WV0|RBR1_NICBE	***-	Retinoblastoma-related protein 1	IPR024599 (Retinoblastoma-associated protein, N-terminal), IPR028309 (Retinoblastoma protein family)	GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0007049 (cell cycle), GO:0051726 (regulation of cell cycle)
Niben101Scf01724g00015.1	gb|KEH40325.1|	--*-	flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula]	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf02108g02018.1	AT1G73460.1	****	Protein kinase superfamily protein LENGTH=1169	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00108g04010.1	sp|Q9ZR39|U2A2A_NICPL	*-*-	Splicing factor U2af large subunit A		
Niben101Scf02679g01012.1	AT5G36100.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=295		
Niben101Scf05234g00003.1	AT2G03430.1	***-	Ankyrin repeat family protein LENGTH=240	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf01687g01003.1	emb|CDY05661.1|	*-*-	BnaC02g38760D [Brassica napus]		
Niben101Scf01304g01007.1	sp|P48980|BGAL_SOLLC	***-	Beta-galactosidase	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf02413g04014.1	sp|Q1RJT3|ODP2_RICBR	****	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	IPR006257 (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0004742 (dihydrolipoyllysine-residue acetyltransferase activity), GO:0006090 (pyruvate metabolic process), GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups), GO:0045254 (pyruvate dehydrogenase complex)
Niben101Scf05011g01026.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12092g00017.1	sp|Q8GWV5|PUB3_ARATH	*-*-	U-box domain-containing protein 3	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0016567 (protein ubiquitination)
Niben101Scf04406g01002.1	sp|Q67ZM4|ADF7_ARATH	****	Actin-depolymerizing factor 7	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf06349g00008.1	sp|P46510|CAHX_FLABI	***-	Carbonic anhydrase	IPR001765 (Carbonic anhydrase)	GO:0004089 (carbonate dehydratase activity), GO:0008270 (zinc ion binding), GO:0015976 (carbon utilization)
Niben101Scf08160g01008.1	ref|XP_002510376.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52563.1| conserved hypothetical protein [Ricinus communis]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf02363g00023.1	AT1G17665.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 149 Blast hits to 146 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 21; Fungi - 5; Plants - 30; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). LENGTH=338		
Niben101Scf02647g00007.1	sp|P17631|DNAJ_BACSU	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf01784g00006.1			Unknown protein		
Niben101Scf05955g03052.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00313g06002.1	ref|NP_974216.1|	--*-	myb family transcription factor [Arabidopsis thaliana] gb|AEE74028.1| myb family transcription factor [Arabidopsis thaliana]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf02081g03009.1	sp|O49255|NAC29_ARATH	--**	NAC transcription factor 29	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03839g12008.1	sp|P17771|OSP4_PEA	***-	Organ-specific protein P4	IPR024489 (Organ specific protein)	
Niben101Scf07123g00010.1	sp|O74311|NAA30_SCHPO	--**	N-alpha-acetyltransferase 30	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf10360g00014.1	ref|XP_002525299.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37127.1| conserved hypothetical protein [Ricinus communis]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf02929g03038.1			Unknown protein		
Niben101Scf00883g16004.1	sp|Q7S7Z6|PPIB_NEUCR	****	Peptidyl-prolyl cis-trans isomerase B	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf07503g00006.1	sp|Q2FJB5|CLPC_STAA3	*-*-	ATP-dependent Clp protease ATP-binding subunit ClpC	IPR004176 (Clp, N-terminal), IPR023150 (Double Clp-N motif)	GO:0019538 (protein metabolic process)
Niben101Scf04607g04014.1	sp|A0LDX4|ARGB_MAGSM	*-*-	Acetylglutamate kinase	IPR010167 (Amino-acid N-acetyltransferase (ArgA)), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0004042 (acetyl-CoA:L-glutamate N-acetyltransferase activity), GO:0005737 (cytoplasm), GO:0006526 (arginine biosynthetic process), GO:0008080 (N-acetyltransferase activity)
Niben101Scf05057g05010.1	gb|AES75256.2|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf07004g02020.1	sp|P0C8A0|PP275_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01319g03003.1			Unknown protein		
Niben101Scf06222g01010.1	AT2G18750.1	***-	Calmodulin-binding protein LENGTH=622	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf01474g01010.1	AT3G45050.2	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=158		
Niben101Scf05709g01020.1	sp|A1RYE4|GYAR_THEPD	*-**	Glyoxylate reductase	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf25394g01016.1	AT3G50240.1	****	ATP binding microtubule motor family protein LENGTH=1051	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf02806g00030.1	sp|B2IBR5|DNAJ_BEII9	***-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf18172g01007.1	sp|Q01440|GTR1_LEIDO	*-**	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03823g02013.1	sp|Q54I81|EI2BA_DICDI	*-*-	Translation initiation factor eIF-2B subunit alpha	IPR000649 (Initiation factor 2B-related), IPR027363 (Methylthioribose-1-phosphate isomerase-like, N-terminal domain)	GO:0044237 (cellular metabolic process)
Niben101Scf00773g08001.1	ref|NP_001044673.1|	***-	product [Oryza sativa Japonica Group]	IPR006461 (Uncharacterised protein family Cys-rich), IPR021369 (Protein of unknown function DUF2985)	
Niben101Scf05230g01008.1	sp|P09926|SURF2_MOUSE	*-*-	Surfeit locus protein 2	IPR008833 (Surfeit locus 2)	
Niben101Scf05937g02015.1	AT1G64530.1	*-*-	Plant regulator RWP-RK family protein LENGTH=841	IPR029016 (GAF domain-like)	
Niben101Scf02974g01001.1	sp|Q03015|NDUS6_NEUCR	*-*-	NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial	IPR019377 (NADH-ubiquinone oxidoreductase, subunit 10)	
Niben101Ctg09569g00003.1	sp|Q68DY9|ZN772_HUMAN	--*-	Zinc finger protein 772	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR022755 (Zinc finger, double-stranded RNA binding)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf05404g04008.1	AT3G11397.1	***-	prenylated RAB acceptor 1.A3 LENGTH=209	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf03216g00002.1			Unknown protein		
Niben101Scf06665g01006.1	sp|Q0AKB3|DNAJ_MARMM	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf03398g01007.1	AT5G65340.1	***-	Protein of unknown function, DUF617 LENGTH=253	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf04040g06006.1	sp|Q8VZH2|APM1_ARATH	***-	Aminopeptidase M1	IPR001930 (Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase), IPR024571 (ERAP1-like C-terminal domain)	GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity), GO:0008270 (zinc ion binding)
Niben101Scf04738g05014.1	sp|B9SXY8|CSPLE_RICCO	***-	CASP-like protein 4D1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf09819g04005.1	emb|CDX75979.1|	*-*-	BnaC03g40620D [Brassica napus]	IPR008889 (VQ)	
Niben101Scf00262g05012.1	AT2G37650.1	*-*-	GRAS family transcription factor LENGTH=718	IPR005202 (Transcription factor GRAS)	
Niben101Scf17408g00005.1	sp|P33077|IAA4_ARATH	***-	Auxin-responsive protein IAA4	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf10074g00002.1	sp|Q8GXA4|WIP1_ARATH	***-	WPP domain-interacting protein 1		
Niben101Scf05438g02007.1	sp|Q948T6|LGUL_ORYSJ	*-**	Lactoylglutathione lyase	IPR004361 (Glyoxalase I), IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	GO:0004462 (lactoylglutathione lyase activity), GO:0046872 (metal ion binding)
Niben101Scf14877g01016.1	sp|O80443|GDL46_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf00079g00014.1	sp|Q94K01|DBR1_ARATH	***-	Lariat debranching enzyme	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Ctg14032g00002.1	sp|F4IWA8|TBL41_ARATH	*-*-	Protein trichome birefringence-like 41	IPR026057 (PC-Esterase)	
Niben101Scf04021g05016.1	sp|Q6P3Q4|STK4_XENTR	*-**	Serine/threonine-protein kinase 4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04899g03020.1	sp|Q5FJF9|RL21_LACAC	--*-	50S ribosomal protein L21	IPR018258 (Ribosomal protein L21, conserved site), IPR028909 (Ribosomal protein L21-like)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02655g01009.1	sp|O24038|NLTP2_SOLPN	****	Non-specific lipid-transfer protein 2	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf06200g02013.1	AT1G28380.1	***-	MAC/Perforin domain-containing protein LENGTH=612	IPR020864 (Membrane attack complex component/perforin (MACPF) domain)	
Niben101Scf06423g03030.1	AT5G47750.1	****	D6 protein kinase like 2 LENGTH=586	IPR011009 (Protein kinase-like domain), IPR011993 (Pleckstrin homology-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf25583g00002.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00576g02005.1	ref|XP_003604291.1|	*-*-	F-box/LRR-repeat protein [Medicago truncatula]	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf05543g01010.1	emb|CAE04909.2|	--*-	OSJNBa0082E08.6 [Oryza sativa Japonica Group]		
Niben101Scf07742g02012.1	sp|Q9LHF0|ZHD9_ARATH	*-*-	Zinc-finger homeodomain protein 9	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain)	
Niben101Scf09512g02006.1	sp|O04609|WRK22_ARATH	****	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00920g05009.1	sp|Q0WN60|PPR48_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01669g00001.1	sp|Q8R2P1|KLH25_MOUSE	*-*-	Kelch-like protein 25	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Ctg14382g00002.1	sp|Q96299|14339_ARATH	*-*-	14-3-3-like protein GF14 mu	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf01628g04010.1	sp|Q2KIE4|MCTS1_BOVIN	***-	Malignant T-cell-amplified sequence 1	IPR015947 (PUA-like domain), IPR016437 (Translation-associated RNA-binding, predicted)	GO:0003723 (RNA binding)
Niben101Scf10336g03007.1	sp|A3Q339|MHPA_MYCSJ	***-	3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	IPR003042 (Aromatic-ring hydroxylase-like)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf00279g11001.1	gb|AAL27434.1|AF430070_1	***-	peroxisomal targeting signal 2 receptor [Gossypium hirsutum]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf00037g02018.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02594g06005.1	emb|CDX99259.1|	***-	BnaC05g33740D [Brassica napus]		
Niben101Scf06949g02024.1	sp|Q9CFU9|LLCA1_LACLA	****	Calcium-transporting ATPase 1	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain), IPR024750 (Calcium-transporting P-type ATPase, N-terminal autoinhibitory domain)	GO:0000166 (nucleotide binding), GO:0005388 (calcium-transporting ATPase activity), GO:0005516 (calmodulin binding), GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding), GO:0070588 (calcium ion transmembrane transport)
Niben101Scf05841g01035.1	sp|P10107|ANXA1_MOUSE	***-	Annexin A1	IPR018502 (Annexin repeat)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf02468g01008.1			Unknown protein		
Niben101Scf03673g05001.1	sp|Q6GGV2|CCA_STAAR	*-*-	CCA-adding enzyme	IPR002646 (Poly A polymerase, head domain)	GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf03129g02011.1	sp|Q94B74|NUDT2_ARATH	*-*-	Nudix hydrolase 2		
Niben101Scf00821g11001.1	AT3G47490.1	***-	HNH endonuclease LENGTH=234		
Niben101Scf07585g00001.1	ref|WP_033031408.1|	***-	2-nitropropane dioxygenase [Streptomyces rimosus]	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0018580 (nitronate monooxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04754g03032.1	emb|CDX74084.1|	*-*-	BnaA03g29630D [Brassica napus]		
Niben101Ctg13505g00002.1	ref|XP_007035295.1|	--*-	Adenine nucleotide alpha hydrolases-like superfamily protein, putative [Theobroma cacao] gb|EOY06221.1| Adenine nucleotide alpha hydrolases-like superfamily protein, putative [Theobroma cacao]		
Niben101Scf00091g00002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03643g09015.1	sp|P36612|PRS4_SCHPO	***-	26S protease regulatory subunit 4 homolog	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf07044g00008.1	AT5G57090.1	*-*-	Auxin efflux carrier family protein LENGTH=647	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03437g02028.1	AT1G19170.1	***-	Pectin lyase-like superfamily protein LENGTH=506	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02411g00013.1			Unknown protein		
Niben101Scf16764g00015.1			Unknown protein		
Niben101Scf04931g01009.1	sp|Q9UZQ4|THIM_PYRAB	--*-	Hydroxyethylthiazole kinase		
Niben101Scf01679g03027.1	sp|A1CUJ5|CBPYA_ASPCL	--*-	Carboxypeptidase Y homolog A	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf03842g09002.1	sp|Q9SIV2|PSD2A_ARATH	*-**	26S proteasome non-ATPase regulatory subunit 2 homolog A	IPR016643 (26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit)	GO:0000502 (proteasome complex), GO:0030234 (enzyme regulator activity), GO:0042176 (regulation of protein catabolic process)
Niben101Scf13361g00003.1	sp|O81767|PP348_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR001464 (Annexin), IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf02914g00001.1	sp|Q9ULA0|DNPEP_HUMAN	****	Aspartyl aminopeptidase	IPR001948 (Peptidase M18), IPR023358 (Peptidase M18, domain 2)	GO:0004177 (aminopeptidase activity), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding)
Niben101Scf10476g01014.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00158g03006.1			Unknown protein		
Niben101Scf07980g02003.1	sp|Q89AC4|RF2_BUCBP	--*-	Peptide chain release factor 2		
Niben101Scf01221g06018.1	sp|Q3C1M3|RPOA_NICSY	*-**	DNA-directed RNA polymerase subunit alpha	IPR011262 (DNA-directed RNA polymerase, insert domain)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf01466g01036.1	sp|Q9SJZ2|PER17_ARATH	****	Peroxidase 17	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05061g04003.1	ref|XP_003593477.1|	***-	Lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf14470g00012.1	sp|Q01I07|IBH1_ORYSI	--*-	Transcription factor IBH1		
Niben101Scf01064g06002.1	sp|Q9FJ45|GDL83_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf06687g01001.1	sp|B9SXY8|CSPLE_RICCO	***-	CASP-like protein 4D1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf08546g01001.1	sp|Q9ZUL7|DEF01_ARATH	-**-	Defensin-like protein 1	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf00963g02001.1	AT5G27395.1	***-	Mitochondrial inner membrane translocase complex, subunit Tim44-related protein LENGTH=313	IPR007379 (Tim44-like domain)	
Niben101Scf03850g03026.1	AT1G64530.1	***-	Plant regulator RWP-RK family protein LENGTH=841	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain)	GO:0005515 (protein binding)
Niben101Scf00289g01004.1	tpg|DAA58574.1|	***-	TPA: hypothetical protein ZEAMMB73_740753 [Zea mays]		
Niben101Scf00691g02031.1			Unknown protein		
Niben101Scf04114g00063.1	sp|Q54JC8|PUR4_DICDI	*-*-	Phosphoribosylformylglycinamidine synthase	IPR016188 (PurM, N-terminal-like)	GO:0003824 (catalytic activity)
Niben101Scf00825g04003.1	sp|P55004|PHYE_IPONI	***-	Phytochrome E	IPR001294 (Phytochrome), IPR005467 (Signal transduction histidine kinase, core)	GO:0000155 (phosphorelay sensor kinase activity), GO:0004871 (signal transducer activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0007165 (signal transduction), GO:0009584 (detection of visible light), GO:0016020 (membrane)
Niben101Scf05142g00026.1			Unknown protein		
Niben101Scf05036g00006.1	sp|P46417|GSTX3_SOYBN	***-	Glutathione S-transferase 3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf00486g03003.1	sp|Q4PE39|SEC23_USTMA	****	Protein transport protein SEC23	IPR002035 (von Willebrand factor, type A), IPR006895 (Zinc finger, Sec23/Sec24-type), IPR006896 (Sec23/Sec24, trunk domain), IPR006900 (Sec23/Sec24, helical domain), IPR012990 (Sec23/Sec24 beta-sandwich), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0006886 (intracellular protein transport), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0008270 (zinc ion binding), GO:0030127 (COPII vesicle coat)
Niben101Scf10847g00001.1	gb|AAS82859.1|	*-*-	geranyl diphosphate synthase small subunit [Antirrhinum majus]		
Niben101Scf06579g01016.1	sp|Q9XI23|BOR4_ARATH	***-	Boron transporter 4	IPR003020 (Bicarbonate transporter, eukaryotic)	GO:0005452 (inorganic anion exchanger activity), GO:0006820 (anion transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf06726g00017.1	sp|Q6Z382|COPG2_ORYSJ	*-*-	Coatomer subunit gamma-2	IPR009028 (Coatomer/calthrin adaptor appendage, C-terminal subdomain), IPR013041 (Coatomer/clathrin adaptor appendage, Ig-like subdomain), IPR016024 (Armadillo-type fold), IPR017106 (Coatomer gamma subunit)	GO:0005198 (structural molecule activity), GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030126 (COPI vesicle coat)
Niben101Scf02814g01001.1	emb|CDY60157.1|	***-	BnaAnng16530D [Brassica napus]		
Niben101Scf02361g07010.1	sp|P0C8G5|UBC_ASFWA	--*-	Ubiquitin-conjugating enzyme E2	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site), IPR027230 (SUMO-conjugating enzyme Ubc9)	GO:0019789 (SUMO transferase activity)
Niben101Scf09696g01102.1	sp|Q6YLT4|PSBF_WELMI	--*-	Cytochrome b559 subunit beta		
Niben101Scf03628g14021.1	AT1G53310.1	****	phosphoenolpyruvate carboxylase 1 LENGTH=967	IPR021135 (Phosphoenolpyruvate carboxylase)	GO:0003824 (catalytic activity), GO:0006099 (tricarboxylic acid cycle), GO:0008964 (phosphoenolpyruvate carboxylase activity), GO:0015977 (carbon fixation)
Niben101Scf01521g13010.1			Unknown protein		
Niben101Scf01500g03001.1	emb|CDY09629.1|	*-*-	BnaC07g34320D [Brassica napus]	IPR012438 (Protein of unknown function DUF1639)	
Niben101Scf03770g01004.1	sp|O95433|AHSA1_HUMAN	*-**	Activator of 90 kDa heat shock protein ATPase homolog 1	IPR015310 (Activator of Hsp90 ATPase, N-terminal)	GO:0001671 (ATPase activator activity), GO:0051087 (chaperone binding)
Niben101Scf06424g00001.1	AT5G08350.1	***-	GRAM domain-containing protein / ABA-responsive protein-related LENGTH=222	IPR004182 (GRAM domain)	
Niben101Scf04279g04004.1	sp|Q148K0|TCEA2_BOVIN	*-**	Transcription elongation factor A protein 2	IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf14308g00005.1	sp|P49098|CYB5_TOBAC	***-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf00744g02001.1	sp|Q9FIE3|VIN3_ARATH	***-	Protein VERNALIZATION INSENSITIVE 3	IPR013783 (Immunoglobulin-like fold)	GO:0005515 (protein binding)
Niben101Scf02726g01007.1	sp|Q5JMH0|HAK6_ORYSJ	*-**	Potassium transporter 6	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf00299g00013.1	sp|A7MB54|HLX_BOVIN	--*-	H2.0-like homeobox protein	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf11715g00004.1	AT2G20725.1	***-	CAAX amino terminal protease family protein LENGTH=301	IPR003675 (CAAX amino terminal protease)	GO:0016020 (membrane)
Niben101Ctg09102g00003.1	sp|Q4W5Z4|DNM3A_CHICK	--**	DNA (cytosine-5)-methyltransferase 3A	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006306 (DNA methylation)
Niben101Scf02340g00008.1	sp|O15050|TRNK1_HUMAN	*-*-	TPR and ankyrin repeat-containing protein 1	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01695g02013.1	sp|A4SVA6|RPPH_POLSQ	--*-	RNA pyrophosphohydrolase	IPR003293 (Nudix hydrolase 6-like)	GO:0016787 (hydrolase activity)
Niben101Scf02593g00002.1	sp|Q9SXC8|UFC1_ARATH	***-	Ubiquitin-fold modifier-conjugating enzyme 1	IPR014806 (Ubiquitin-fold modifier-conjugating enzyme 1)	
Niben101Scf01432g03007.1	ref|XP_007042470.1|	***-	Cyclin delta-3 isoform 1 [Theobroma cacao] gb|EOX98301.1| Cyclin delta-3 isoform 1 [Theobroma cacao]		
Niben101Scf03141g09006.1	AT1G66500.1	*-*-	Pre-mRNA cleavage complex II LENGTH=416	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf01281g07004.1	AT1G30460.1	*-*-	cleavage and polyadenylation specificity factor 30 LENGTH=631	IPR000571 (Zinc finger, CCCH-type), IPR007275 (YTH domain)	GO:0046872 (metal ion binding)
Niben101Scf00508g01019.1	AT5G10460.1	***-	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=306	IPR006357 (HAD-superfamily hydrolase, subfamily IIA), IPR023214 (HAD-like domain)	
Niben101Scf01139g01002.1	gb|ABS79378.1|	***-	At4g40080-like protein [Arabidopsis lyrata subsp. petraea]	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding)
Niben101Scf04304g02007.1			Unknown protein		
Niben101Scf05417g01013.1	gb|KEH18880.1|	***-	Ripening related protein family [Medicago truncatula]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf00039g02004.1	sp|Q02932|KA120_YEAST	--*-	Importin beta-like protein KAP120		
Niben101Scf03734g04001.1	AT2G36630.1	***-	Sulfite exporter TauE/SafE family protein LENGTH=459	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf00472g07004.1	sp|Q66I12|CCD47_DANRE	***-	Coiled-coil domain-containing protein 47	IPR012879 (Protein of unknown function DUF1682)	
Niben101Scf13057g00014.1	sp|Q61466|SMRD1_MOUSE	***-	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	IPR003121 (SWIB/MDM2 domain)	GO:0005515 (protein binding)
Niben101Scf01291g04002.1	sp|B4ZIX8|SCC4_XENLA	--*-	MAU2 chromatid cohesion factor homolog		
Niben101Scf03350g04009.1	emb|CDY12549.1|	***-	BnaC06g00750D [Brassica napus]		
Niben101Scf06864g00006.1	ref|XP_002524663.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37682.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01732g01011.1	AT4G12290.1	****	Copper amine oxidase family protein LENGTH=741	IPR000269 (Copper amine oxidase)	GO:0005507 (copper ion binding), GO:0008131 (primary amine oxidase activity), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00428g01010.1	sp|P81395|MYB30_ANTMA	*-*-	Myb-related protein 330	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00202g07002.1	emb|CDY45320.1|	-**-	BnaA03g52930D [Brassica napus] emb|CDX72492.1| BnaC07g45140D [Brassica napus]		
Niben101Scf34790g00006.1	sp|Q0JKT4|PLA2_ORYSJ	*-*-	Phospholipase A1-II 2	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02074g07078.1	ATMG00640.1	*-**	hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding chrM:188084-188662 REVERSE LENGTH=192	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf03203g07016.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf06004g00024.1	sp|Q0WKZ3|PP105_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01232g00007.1	sp|B0Y9Q4|MYO1_ASPFC	*-**	Myosin-1	IPR010926 (Myosin tail 2)	GO:0003774 (motor activity), GO:0016459 (myosin complex)
Niben101Scf13540g00004.1	sp|Q8LPR5|TCP4_ARATH	***-	Transcription factor TCP4	IPR005333 (Transcription factor, TCP)	
Niben101Scf03634g05004.1			Unknown protein		
Niben101Scf11646g02006.1	ref|XP_007034556.1|	***-	UPF0329 protein ECU01_0100/ECU01_1510/ECU08_0030, putative isoform 1 [Theobroma cacao] gb|EOY05482.1| UPF0329 protein ECU01_0100/ECU01_1510/ECU08_0030, putative isoform 1 [Theobroma cacao]		
Niben101Scf04610g07022.1	ref|XP_002535202.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF27181.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf17819g01011.1	sp|Q07060|ATP9_PETSP	*-**	ATP synthase subunit 9, mitochondrial	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf04362g02008.1	AT2G39210.1	***-	Major facilitator superfamily protein LENGTH=601	IPR010658 (Nodulin-like), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf08151g00006.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06666g01009.1	sp|A4RKC3|DCL1_MAGO7	*-*-	Dicer-like protein 1	IPR006935 (Helicase/UvrB domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0016787 (hydrolase activity)
Niben101Scf11245g03005.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01184g14006.1	emb|CDX96321.1|	--*-	BnaA07g29320D [Brassica napus]		
Niben101Scf04953g06007.1	sp|Q9SF29|SYP71_ARATH	***-	Syntaxin-71	IPR000727 (Target SNARE coiled-coil domain)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane)
Niben101Scf01818g07001.1	sp|A0PPP5|TAL_MYCUA	***-	Transaldolase	IPR001585 (Transaldolase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004801 (sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity), GO:0005737 (cytoplasm), GO:0005975 (carbohydrate metabolic process), GO:0006098 (pentose-phosphate shunt)
Niben101Scf02148g00019.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf03815g00005.1	emb|CDY11431.1|	*-*-	BnaA09g39970D [Brassica napus]		
Niben101Scf05157g04017.1	AT2G17220.1	*-*-	Protein kinase superfamily protein LENGTH=414	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05858g00001.1	AT4G14940.1	****	amine oxidase 1 LENGTH=650	IPR000269 (Copper amine oxidase)	GO:0005507 (copper ion binding), GO:0008131 (primary amine oxidase activity), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg16096g00001.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf01582g03009.1	ref|NP_001058128.1|	--*-	product [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf00509g00019.1	sp|Q61116|ZN235_MOUSE	--*-	Zinc finger protein 235	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00654g04001.1	sp|Q8GUM3|AAP5_ARATH	***-	Amino acid permease 5	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf10262g00006.1	sp|Q9SN23|LBD38_ARATH	***-	LOB domain-containing protein 38	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf01295g05012.1			Unknown protein		
Niben101Scf06435g03017.1	sp|Q63850|NUP62_MOUSE	*-**	Nuclear pore glycoprotein p62	IPR007758 (Nucleoporin, NSP1-like, C-terminal), IPR026010 (Nucleoporin NSP1/NUP62)	GO:0005643 (nuclear pore), GO:0017056 (structural constituent of nuclear pore)
Niben101Scf10152g04006.1	sp|A9BFX5|ATPA_PETMO	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf04475g00005.1	sp|Q6ZKC0|14333_ORYSJ	***-	14-3-3-like protein GF14-C	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf05736g01003.1	gb|KEH18761.1|	--*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf16498g00007.1	sp|Q9ZR40|U2A2B_NICPL	*-*-	Splicing factor U2af large subunit B	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03371g01018.1	emb|CDY15385.1|	***-	BnaC04g42380D [Brassica napus]		
Niben101Scf21557g01029.1	sp|Q93ZR1|ELP3_ARATH	***-	Elongator complex protein 3	IPR005910 (Histone acetyltransferase ELP3), IPR007197 (Radical SAM), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0003824 (catalytic activity), GO:0008080 (N-acetyltransferase activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf03377g02013.1	sp|Q2TBP7|MYCBP_BOVIN	***-	C-Myc-binding protein	IPR026060 (Associate of Myc 1)	GO:0003713 (transcription coactivator activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02907g06004.1	sp|P42327|ADH2_GEOSE	***-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04113g11001.1	sp|Q86YG4|NT5D4_HUMAN	***-	5'-nucleotidase domain-containing protein 4	IPR008380 (HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase), IPR023214 (HAD-like domain)	
Niben101Scf07778g03017.1	sp|A4WDA9|ISCA_ENT38	--*-	Iron-binding protein IscA	IPR000361 (FeS cluster biogenesis)	
Niben101Scf03925g00011.1	AT4G20270.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=992	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf04697g01007.1	emb|CDY72341.1|	--*-	BnaCnng77200D [Brassica napus]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf08519g03001.1	sp|Q9ZUM0|C3H17_ARATH	***-	Zinc finger CCCH domain-containing protein 17	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf02537g00004.1	sp|Q6ZKC0|14333_ORYSJ	***-	14-3-3-like protein GF14-C	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf02798g01032.1			Unknown protein		
Niben101Scf26564g00004.1	sp|Q5ZK33|LETM1_CHICK	*-*-	LETM1 and EF-hand domain-containing protein 1, mitochondrial	IPR011685 (LETM1-like), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00031g00001.1	sp|A4VIE0|MURA_PSEU5	****	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	IPR005750 (UDP-N-acetylglucosamine 1-carboxyvinyltransferase), IPR013792 (RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta)	GO:0003824 (catalytic activity), GO:0008760 (UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups), GO:0019277 (UDP-N-acetylgalactosamine biosynthetic process)
Niben101Scf16022g01018.1	AT4G22900.1	***-	Protein of unknown function (DUF1191) LENGTH=343	IPR010605 (Protein of unknown function DUF1191)	
Niben101Scf04352g00007.1			Unknown protein		
Niben101Scf20652g00004.1	AT1G75510.1	****	Transcription initiation factor IIF, beta subunit LENGTH=261	IPR003196 (Transcription initiation factor IIF, beta subunit)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0005674 (transcription factor TFIIF complex), GO:0006367 (transcription initiation from RNA polymerase II promoter)
Niben101Scf04494g00016.1	sp|A8A609|GHRB_ECOHS	****	Glyoxylate/hydroxypyruvate reductase B	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf17819g01010.1	ref|NP_001044668.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf18652g00028.1			Unknown protein		
Niben101Scf28036g00001.1	AT1G30135.1	***-	jasmonate-zim-domain protein 8 LENGTH=131	IPR010399 (Tify), IPR018467 (CO/COL/TOC1, conserved site)	
Niben101Scf01124g07001.1	AT4G36590.1	***-	MADS-box transcription factor family protein LENGTH=248	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf04038g01004.1	sp|Q4WJS4|PLPL_ASPFU	***-	Patatin-like phospholipase domain-containing protein	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase), IPR021771 (Triacylglycerol lipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf03772g02010.1	AT4G17370.1	****	Oxidoreductase family protein LENGTH=368	IPR004104 (Oxidoreductase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04664g01002.1	sp|C0SVM5|BBX19_ARATH	****	B-box zinc finger protein 19	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf03392g00006.1	sp|P52026|DPO1_GEOSE	--**	DNA polymerase I	IPR020045 (5'-3' exonuclease, C-terminal domain)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity)
Niben101Scf05494g00011.1	sp|Q57H91|STHA_SALCH	--*-	Soluble pyridine nucleotide transhydrogenase		
Niben101Scf09334g02008.1	gb|AAC49973.1|	*-*-	ORF; able to induce HR-like lesions [Nicotiana tabacum]		
Niben101Scf07493g00002.1			Unknown protein		
Niben101Scf09791g00002.1	ref|XP_002510336.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF52523.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf00021g01003.1	sp|O82811|NRT21_ARATH	*-*-	High-affinity nitrate transporter 2.1		
Niben101Scf00595g02016.1	sp|O49118|H2B_CAPAN	*-*-	Histone H2B	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf13185g00009.1	AT1G03980.1	****	phytochelatin synthase 2 LENGTH=452	IPR007719 (Phytochelatin synthase), IPR015407 (Phytochelatin synthase, C-terminal)	GO:0010038 (response to metal ion), GO:0016756 (glutathione gamma-glutamylcysteinyltransferase activity), GO:0046872 (metal ion binding), GO:0046938 (phytochelatin biosynthetic process)
Niben101Scf11399g00008.1	sp|Q9UYB2|SUA5_PYRAB	*-*-	Threonylcarbamoyl-AMP synthase	IPR017945 (DHBP synthase RibB-like alpha/beta domain)	GO:0003725 (double-stranded RNA binding)
Niben101Scf04953g12002.1	ref|XP_007022164.1|	*-*-	Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao] gb|EOY13689.1| Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]		
Niben101Scf04609g00018.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf03352g00001.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf05950g01005.1	gb|AES92089.2|	***-	DNA-binding protein [Medicago truncatula]		
Niben101Ctg15681g00001.1	sp|Q9FZG4|HXKL1_ARATH	***-	Hexokinase-like 1 protein	IPR001312 (Hexokinase)	GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf08792g00008.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf06058g00025.1	sp|Q41001|BCP_PEA	*-*-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf02250g03011.1	sp|A1CZJ3|GMT1_NEOFI	***-	GDP-mannose transporter 1		
Niben101Scf04003g09010.1	AT5G67130.1	*-*-	PLC-like phosphodiesterases superfamily protein LENGTH=426	IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain)	GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Scf01858g01027.1	sp|Q3T134|SPCS1_BOVIN	--**	Signal peptidase complex subunit 1	IPR009542 (Microsomal signal peptidase 12kDa subunit)	GO:0005787 (signal peptidase complex), GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf01495g00002.1	ref|XP_007016521.1|	***-	Domain of Uncharacterized protein function, putative [Theobroma cacao] gb|EOY34140.1| Domain of Uncharacterized protein function, putative [Theobroma cacao]	IPR010369 (Protein of unknown function DUF966)	
Niben101Scf01463g03002.1	AT1G48480.1	****	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00369g09020.1	sp|Q9QXA5|LSM4_MOUSE	***-	U6 snRNA-associated Sm-like protein LSm4	IPR010920 (Like-Sm (LSM) domain), IPR027141 (U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3)	
Niben101Scf04473g08007.1			Unknown protein		
Niben101Scf00854g08077.1			Unknown protein		
Niben101Scf06090g00009.1	AT3G14270.1	*-**	phosphatidylinositol-4-phosphate 5-kinase family protein LENGTH=1791	IPR002423 (Chaperonin Cpn60/TCP-1), IPR002498 (Phosphatidylinositol-4-phosphate 5-kinase, core), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027409 (GroEL-like apical domain), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0044267 (cellular protein metabolic process), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf00504g06019.1	AT1G03520.1	*-**	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=447	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf08143g03018.1	sp|Q40702|MADS2_ORYSJ	*-*-	MADS-box transcription factor 2	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03376g04013.1	sp|Q2SJP9|MSRB_HAHCH	*-**	Peptide methionine sulfoxide reductase MsrB	IPR011057 (Mss4-like), IPR028427 (Peptide methionine sulfoxide reductase)	GO:0006979 (response to oxidative stress), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0030091 (protein repair), GO:0033743 (peptide-methionine (R)-S-oxide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00159g08017.1	sp|P0C8G1|KTHY_ASFP4	*-**	Thymidylate kinase	IPR018094 (Thymidylate kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004798 (thymidylate kinase activity), GO:0005524 (ATP binding), GO:0006233 (dTDP biosynthetic process)
Niben101Scf01785g03010.1	sp|Q54GB2|CTSL2_DICDI	*-**	CTD small phosphatase-like protein 2	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding), GO:0016791 (phosphatase activity)
Niben101Scf02714g06020.1	AT1G57600.1	***-	MBOAT (membrane bound O-acyl transferase) family protein LENGTH=533	IPR004299 (Membrane bound O-acyl transferase, MBOAT)	
Niben101Scf00820g08009.1	gb|KEH20799.1|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00116g01001.1	gb|AFK31163.1|	***-	Hd3a, partial [Oryza rufipogon]	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf12483g02004.1	ref|XP_002514414.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF48010.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03222g01010.1	emb|CDY24374.1|	***-	BnaA07g02990D [Brassica napus]		
Niben101Ctg00141g00002.1			Unknown protein		
Niben101Scf05872g00001.1	sp|Q84XV2|GTE1_ARATH	*-*-	Transcription factor GTE1	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf34790g00004.1	gb|AAF14244.1|AF110228_1	***-	nuclear RNA binding protein A [Spinacia oleracea]	IPR006861 (Hyaluronan/mRNA-binding protein), IPR019084 (Stm1, N-terminal)	
Niben101Scf09822g01014.1	AT4G01810.1	*-*-	Sec23/Sec24 protein transport family protein LENGTH=880		
Niben101Scf05717g03001.1	emb|CDX99879.1|	***-	BnaC05g23010D [Brassica napus]		
Niben101Scf01375g09010.1	AT1G79740.1	***-	hAT transposon superfamily LENGTH=651	IPR003656 (Zinc finger, BED-type), IPR007021 (Domain of unknown function DUF659), IPR008906 (HAT dimerisation domain, C-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf28086g00003.1	sp|Q9LFR3|GASAE_ARATH	--*-	Gibberellin-regulated protein 14	IPR003854 (Gibberellin regulated protein)	
Niben101Scf01351g00001.1			Unknown protein	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf04745g03004.1	sp|B2A5T8|SYP_NATTJ	*-*-	Proline--tRNA ligase	IPR004154 (Anticodon-binding)	
Niben101Scf03365g01008.1	sp|P49508|PSB28_ODOSI	****	Photosystem II reaction center Psb28 protein	IPR005610 (Photosystem II Psb28, class 1)	GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0016020 (membrane)
Niben101Scf35520g00001.1			Unknown protein		
Niben101Scf00961g00001.1	sp|Q1RJJ1|NUOE_RICBR	****	NADH-quinone oxidoreductase subunit E	IPR002023 (NADH-quinone oxidoreductase subunit E-like), IPR012336 (Thioredoxin-like fold)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04117g06009.1	sp|Q40561|IP21_TOBAC	--**	Proteinase inhibitor type-2	IPR003465 (Proteinase inhibitor I20, Pin2)	GO:0004867 (serine-type endopeptidase inhibitor activity)
Niben101Scf02625g01003.1	sp|P43157|CYSP_SCHJA	****	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf15364g00008.1	sp|Q9LQ16|PPR94_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00528g01022.1	sp|P46629|RAB25_RABIT	*-*-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf12405g00023.1	sp|Q089P5|RS17_SHEFN	-**-	30S ribosomal protein S17	IPR000266 (Ribosomal protein S17), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02979g06008.1	sp|Q6NKW9|E138_ARATH	***-	Glucan endo-1,3-beta-glucosidase 8	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf15476g01009.1	sp|Q9M367|BECN1_ARATH	*-*-	Beclin-1-like protein	IPR007243 (Atg6/Beclin)	GO:0006914 (autophagy)
Niben101Scf19295g00001.1	AT1G75140.1	***-	unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=617	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf02050g01003.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00244g00004.1	emb|CDY00658.1|	*-*-	BnaC03g36420D [Brassica napus]		
Niben101Scf08504g03010.1	ref|NP_001042723.2|	***-	[Oryza sativa Japonica Group] dbj|BAF04637.2| [Oryza sativa Japonica Group]	IPR027295 (Quinonprotein alcohol dehydrogenase-like domain)	
Niben101Scf06720g01021.1	sp|Q27GI3|NAT6_ARATH	****	Nucleobase-ascorbate transporter 6	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf09960g01003.1	sp|Q8H5F8|ADPRM_ORYSJ	***-	Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf07741g02004.1	sp|Q2KIB9|RPP29_BOVIN	*-**	Ribonuclease P protein subunit p29	IPR023534 (Rof/RNase P-like)	GO:0000172 (ribonuclease MRP complex), GO:0003723 (RNA binding), GO:0004540 (ribonuclease activity), GO:0006364 (rRNA processing), GO:0006379 (mRNA cleavage), GO:0008033 (tRNA processing), GO:0030677 (ribonuclease P complex)
Niben101Scf26737g00003.1	emb|CAD41196.2|	*-*-	OSJNBa0074L08.7 [Oryza sativa Japonica Group]		
Niben101Scf04529g00004.1	sp|A4QLI0|ATPF_LOBMA	****	ATP synthase subunit b, chloroplastic	IPR000454 (ATPase, F0 complex, subunit C), IPR002146 (ATPase, F0 complex, subunit B/B', bacterial/chloroplast), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf05960g02001.1	AT5G48170.1	***-	F-box family protein LENGTH=157	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05824g12005.1	sp|O22348|TBA2_ELEIN	***-	Tubulin alpha-2 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf04114g01057.1	AT4G01810.1	*-*-	Sec23/Sec24 protein transport family protein LENGTH=880		
Niben101Scf11417g00013.1	sp|P40977|PLC1_SCHPO	*-**	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase 1	IPR001192 (Phosphoinositide phospholipase C family), IPR011992 (EF-hand domain pair)	GO:0004435 (phosphatidylinositol phospholipase C activity), GO:0006629 (lipid metabolic process), GO:0007165 (signal transduction), GO:0008081 (phosphoric diester hydrolase activity), GO:0035556 (intracellular signal transduction)
Niben101Scf02793g16009.1	sp|A4RD09|ARO1_MAGO7	--*-	Pentafunctional AROM polypeptide		
Niben101Scf01658g02010.1	sp|Q0WKZ3|PP105_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04185g04009.1	sp|A5FSB7|RSMH_DEHMB	****	Ribosomal RNA small subunit methyltransferase H	IPR002903 (Ribosomal RNA small subunit methyltransferase H), IPR023397 (S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf00630g05004.1	sp|I1N462|SBT1_SOYBN	--*-	Subtilisin-like protease		
Niben101Scf00234g02032.1	sp|Q9LK50|AB26G_ARATH	*-*-	ABC transporter G family member 26		
Niben101Scf06461g06014.1	ref|XP_002904030.1|	--*-	helitron helicase-like protein [Phytophthora infestans T30-4] gb|EEY54208.1| helitron helicase-like protein [Phytophthora infestans T30-4]		
Niben101Scf07703g00001.1	AT2G27080.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=260		
Niben101Scf02323g01010.1	sp|P93194|RPK1_IPONI	****	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01855g01001.1	sp|O04514|OPT2_ARATH	*-*-	Oligopeptide transporter 2	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf03284g00003.1	sp|Q5R7B8|KLH20_PONAB	*-*-	Kelch-like protein 20	IPR000858 (S-locus glycoprotein), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf01502g00016.1	gb|ABA98491.1|	--*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf03839g09002.1	emb|CDY26231.1|	***-	BnaA06g11860D [Brassica napus]		
Niben101Scf00486g03002.1	sp|Q9FLG2|MRS22_ARATH	****	Magnesium transporter MRS2-2	IPR002523 (Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB), IPR026573 (Magnesium transporter MRS2/LPE10)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Ctg06549g00002.1	AT4G25080.3	***-	magnesium-protoporphyrin IX methyltransferase LENGTH=312	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf08341g10006.1	AT2G07739.1	*-*-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf05102g00008.1	sp|P52855|RLA1_MAIZE	*-*-	60S acidic ribosomal protein P1	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf04451g00025.1			Unknown protein		
Niben101Scf06424g00003.1	AT1G73260.1	****	kunitz trypsin inhibitor 1 LENGTH=215	IPR002160 (Proteinase inhibitor I3, Kunitz legume)	GO:0004866 (endopeptidase inhibitor activity)
Niben101Scf00052g06003.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06323g00010.1	AT3G21690.1	***-	MATE efflux family protein LENGTH=506	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf21895g00005.1	AT5G46330.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1173		
Niben101Scf11944g00020.1	sp|Q93V47|GG2_ARATH	***-	Guanine nucleotide-binding protein subunit gamma 2	IPR015898 (G-protein gamma-like domain)	
Niben101Scf07593g02012.1	ref|XP_002515459.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF46908.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04119g03006.1	sp|Q6DEY1|SPF30_XENTR	***-	Survival of motor neuron-related-splicing factor 30	IPR002999 (Tudor domain), IPR010304 (Survival motor neuron)	GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006397 (mRNA processing)
Niben101Scf14151g00017.1	ref|XP_003599949.1|	-***	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf10366g00013.1	sp|O95716|RAB3D_HUMAN	*-*-	Ras-related protein Rab-3D	IPR001806 (Small GTPase superfamily), IPR006785 (Peroxisome membrane anchor protein Pex14p, N-terminal), IPR025655 (Peroxisomal membrane protein 14), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0005525 (GTP binding), GO:0005778 (peroxisomal membrane), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016560 (protein import into peroxisome matrix, docking)
Niben101Scf05584g03009.1	sp|P56331|IF1A_ONOVI	****	Eukaryotic translation initiation factor 1A	IPR001253 (Translation initiation factor 1A (eIF-1A))	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf00551g02007.1			Unknown protein		
Niben101Scf17764g01002.1	sp|Q0BYB6|RL23_HYPNA	*-*-	50S ribosomal protein L23	IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00236g01007.1	sp|Q2RU39|NUOB_RHORT	****	NADH-quinone oxidoreductase subunit B	IPR006138 (NADH-ubiquinone oxidoreductase, 20 Kd subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0048038 (quinone binding), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00199g02008.1	sp|Q6EU39|MADS6_ORYSJ	*-**	MADS-box transcription factor 6	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf04901g00013.1	sp|Q940X7|RBX1A_ARATH	***-	RING-box protein 1a	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01326g00011.1	sp|Q4V7B8|RNF44_RAT	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01694g10006.1			Unknown protein		
Niben101Scf24029g00001.1	sp|A7QEU4|PER5_VITVI	***-	Peroxidase 5	IPR010255 (Haem peroxidase)	
Niben101Scf03374g06024.1	emb|CBM56257.1|	*-**	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02404g01025.1			Unknown protein		
Niben101Scf01596g10013.1	sp|Q9M2F1|RS272_ARATH	*-*-	40S ribosomal protein S27-2	IPR000592 (Ribosomal protein S27e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03337g02004.1	AT3G60670.1	***-	PLATZ transcription factor family protein LENGTH=245	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf08355g03014.1	sp|Q54TL0|KIF7_DICDI	*-**	Kinesin-related protein 7	IPR001752 (Kinesin motor domain), IPR021720 (Malectin), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf03064g02014.1			Unknown protein		
Niben101Scf00128g03002.1	sp|F4JAU3|P4H2_ARATH	*-*-	Prolyl 4-hydroxylase 2		
Niben101Scf09153g05002.1	ref|XP_010109534.1|	*-*-	Histone-lysine N-methyltransferase [Morus notabilis] gb|EXC23138.1| Histone-lysine N-methyltransferase [Morus notabilis]		
Niben101Scf03850g03024.1	AT1G80000.1	***-	CASC3/Barentsz eIF4AIII binding LENGTH=605	IPR018545 (Btz domain)	
Niben101Scf30941g00001.1			Unknown protein		
Niben101Scf07459g00018.1	emb|CDY37047.1|	***-	BnaA04g26250D [Brassica napus]		
Niben101Scf07792g02014.1	gb|AES70859.2|	***-	P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]	IPR004181 (Zinc finger, MIZ-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008270 (zinc ion binding)
Niben101Scf32603g00010.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02411g00015.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf01616g07001.1	sp|Q5F371|SBNO1_CHICK	*-*-	Protein strawberry notch homolog 1	IPR026741 (Protein strawberry notch)	GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06280g05014.1	ref|NP_001149976.1|	--*-	SAM domain family protein [Zea mays] gb|ACG37385.1| SAM domain family protein [Zea mays] gb|ACN26643.1| unknown [Zea mays] gb|AFW58517.1| putative SAM domain protein [Zea mays]		
Niben101Scf06683g05003.1	ref|XP_002528543.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF33855.1| conserved hypothetical protein [Ricinus communis]	IPR007789 (Protein of unknown function DUF688)	
Niben101Scf09296g01012.1			Unknown protein	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11153g00012.1	AT1G48480.1	****	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf23606g00011.1	sp|C5BDY7|MDTK_EDWI9	--*-	Multidrug resistance protein MdtK		
Niben101Scf02438g02011.1	sp|Q54Q31|PHB2_DICDI	***-	Prohibitin-2	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf11319g00003.1	sp|Q5KVX9|MENE_GEOKA	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01166g01035.1	AT4G08310.1	*-*-	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages;		
Niben101Scf05272g00013.1	sp|O82804|ELF3_ARATH	***-	Protein EARLY FLOWERING 3		
Niben101Scf09459g00003.1	AT3G54660.1	****	glutathione reductase LENGTH=565	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR016156 (FAD/NAD-linked reductase, dimerisation domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0016668 (oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07413g07001.1	sp|P47735|RLK5_ARATH	--*-	Receptor-like protein kinase 5		
Niben101Scf00876g02002.1	sp|Q93ZR6|WSD1_ARATH	****	O-acyltransferase WSD1	IPR004255 (O-acyltransferase, WSD1, N-terminal), IPR009721 (O-acyltransferase, WSD1, C-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity), GO:0045017 (glycerolipid biosynthetic process)
Niben101Scf00348g10008.1	ref|WP_019474951.1|	***-	glycosyl transferase [Prochlorococcus sp. W2]	IPR028098 (Glycosyltransferase subfamily 4, N-terminal domain)	
Niben101Scf01214g00004.1	AT1G64620.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=352	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00337g06003.1	sp|Q94JW8|SPL6_ARATH	*-**	Squamosa promoter-binding-like protein 6	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf14518g00012.1	sp|Q9ZU97|VAC14_ARATH	***-	Protein VAC14 homolog	IPR016024 (Armadillo-type fold), IPR021841 (Vacuolar protein 14 C-terminal Fig4-binding domain), IPR026825 (Vacuole morphology and inheritance protein 14)	GO:0005488 (binding), GO:0043550 (regulation of lipid kinase activity), GO:0070772 (PAS complex)
Niben101Scf28363g00014.1			Unknown protein		
Niben101Scf12830g00009.1	AT1G67180.1	****	zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein LENGTH=453	IPR001357 (BRCT domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00294g01005.1	sp|P42552|S1FA_SPIOL	-***	DNA-binding protein S1FA	IPR006779 (DNA binding protein S1FA)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10015g05002.1	ref|XP_002531983.1|	--*-	RNA binding protein, putative [Ricinus communis] gb|EEF30419.1| RNA binding protein, putative [Ricinus communis]		
Niben101Scf07429g00005.1	sp|Q8VZU2|SY132_ARATH	***-	Syntaxin-132	IPR010989 (t-SNARE)	GO:0005515 (protein binding), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf06949g02026.1	sp|Q9H1I8|ASCC2_HUMAN	*-*-	Activating signal cointegrator 1 complex subunit 2	IPR009060 (UBA-like)	GO:0005515 (protein binding)
Niben101Scf02725g06003.1	AT1G30040.1	***-	gibberellin 2-oxidase LENGTH=341	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02594g06003.1	AT1G75330.1	****	ornithine carbamoyltransferase LENGTH=375	IPR006130 (Aspartate/ornithine carbamoyltransferase)	GO:0004585 (ornithine carbamoyltransferase activity), GO:0006520 (cellular amino acid metabolic process), GO:0006591 (ornithine metabolic process), GO:0016597 (amino acid binding), GO:0016743 (carboxyl- or carbamoyltransferase activity)
Niben101Scf01241g04008.1	AT2G02050.1	****	NADH-ubiquinone oxidoreductase B18 subunit, putative LENGTH=103	IPR008698 (NADH:ubiquinone oxidoreductase, B18 subunit)	GO:0003954 (NADH dehydrogenase activity), GO:0005739 (mitochondrion), GO:0008137 (NADH dehydrogenase (ubiquinone) activity)
Niben101Scf02262g02007.1	sp|Q9FH37|ILR3_ARATH	***-	Transcription factor ILR3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01432g06006.1	sp|Q9FH99|FB302_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf05417g00003.1	sp|Q7XJ98|KATAM_ARATH	*-*-	Xyloglucan galactosyltransferase KATAMARI1	IPR004263 (Exostosin-like)	
Niben101Scf03653g01019.1	AT2G03820.1	***-	nonsense-mediated mRNA decay NMD3 family protein LENGTH=516	IPR007064 (NMD3)	
Niben101Scf09729g00028.1	sp|Q9FG71|EMC89_ARATH	***-	ER membrane protein complex subunit 8/9 homolog	IPR005366 (Uncharacterised protein family UPF0172)	
Niben101Scf11169g00002.1			Unknown protein		
Niben101Scf00271g09023.1	sp|Q8JZX4|SPF45_MOUSE	*-*-	Splicing factor 45	IPR016967 (Splicing factor, SPF45)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06369g02018.1	sp|Q7XJ98|KATAM_ARATH	*-*-	Xyloglucan galactosyltransferase KATAMARI1	IPR004263 (Exostosin-like)	
Niben101Scf03862g03003.1	sp|Q1C742|ARNA_YERPA	***-	Bifunctional polymyxin resistance protein ArnA	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf17204g00007.1	sp|Q9XHP0|11S2_SESIN	***-	11S globulin seed storage protein 2	IPR006044 (11-S seed storage protein, plant)	GO:0045735 (nutrient reservoir activity)
Niben101Scf00526g03013.1	sp|Q9FJR0|RENT1_ARATH	****	Regulator of nonsense transcripts 1 homolog	IPR018999 (RNA helicase UPF1, UPF2-interacting domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000184 (nuclear-transcribed mRNA catabolic process, nonsense-mediated decay), GO:0003677 (DNA binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008270 (zinc ion binding)
Niben101Scf14329g00001.1	gb|AAZ74751.1|	--*-	MOP9.15 [Arabidopsis thaliana]		
Niben101Scf11443g01010.1	sp|P53756|PDR18_YEAST	*-**	ABC transporter ATP-binding protein/permease PDR18	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf01506g02012.1			Unknown protein		
Niben101Scf03080g02011.1	sp|Q21017|KIN29_CAEEL	*-**	Serine/threonine-protein kinase kin-29	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02468g01007.1	sp|Q80WA4|NOVA1_RAT	*-**	RNA-binding protein Nova-1	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf01330g02009.1	sp|Q9FDX9|GG1_ARATH	-**-	Guanine nucleotide-binding protein subunit gamma 1		
Niben101Scf10434g00038.1	AT5G64430.1	***-	Octicosapeptide/Phox/Bem1p family protein LENGTH=513	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf03595g04011.1	sp|P48325|P2SAF_CYAPA	***-	Photosystem II stability/assembly factor HCF136	IPR028203 (Photosynthesis system II assembly factor Ycf48/Hcf136-like domain)	
Niben101Scf00415g00002.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR018392 (LysM domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01983g01021.1	sp|Q54BD4|STATC_DICDI	*-**	Signal transducer and activator of transcription C	IPR001217 (Transcription factor STAT)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0004871 (signal transducer activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0007165 (signal transduction)
Niben101Scf00015g04025.1	sp|P93751|ZFP8_ARATH	***-	Zinc finger protein 8	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf05226g06005.1	ref|XP_007018667.1|	****	Phot isoform 1 [Theobroma cacao]	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf00149g05003.1	sp|Q8LED3|TBL3_ARATH	***-	Protein trichome birefringence-like 3	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf00369g15012.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf01681g11005.1	gb|KEH39494.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf03651g03002.1	AT5G04000.2	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl. LENGTH=118		
Niben101Scf06176g04001.1	dbj|BAD26400.1|	***-	transporter-like protein [Oryza sativa Japonica Group]	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02240g09006.1	sp|Q7UN14|RS3_RHOBA	***-	30S ribosomal protein S3	IPR009019 (K homology domain, prokaryotic type), IPR015946 (K homology domain-like, alpha/beta)	GO:0003723 (RNA binding)
Niben101Scf03614g00004.1	sp|Q6DBP8|GAT11_ARATH	****	GATA transcription factor 11	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03076g01026.1	sp|Q869Q3|NAPA_DICDI	***-	Nck-associated protein 1 homolog	IPR019137 (Nck-associated protein 1)	
Niben101Ctg10912g00001.1	emb|CDX88734.1|	*-*-	BnaA03g09150D [Brassica napus]		
Niben101Scf05234g00002.1	ref|XP_002315012.1|	--*-	ankyrin repeat family protein [Populus trichocarpa] gb|EEF01183.1| ankyrin repeat family protein [Populus trichocarpa]		
Niben101Scf05306g00009.1	emb|CDX91113.1|	*-*-	BnaC02g04840D [Brassica napus]		
Niben101Scf03373g02001.1	gb|KEH35304.1|	***-	C2 domain protein [Medicago truncatula]	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf10900g00001.1	emb|CDY00898.1|	***-	BnaC05g43020D [Brassica napus]	IPR007033 (Transcriptional activator, plants)	
Niben101Scf05437g06003.1	ref|XP_007037794.1|	***-	Seed imbibition 2 isoform 3 [Theobroma cacao] gb|EOY22295.1| Seed imbibition 2 isoform 3 [Theobroma cacao]	IPR008811 (Glycosyl hydrolases 36), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf04048g00011.1	ref|YP_002608396.1|	***-	orf86 [Vitis vinifera] emb|CAQ77655.1| orf86 [Vitis vinifera] gb|ACS15212.1| ORF86 [Vitis vinifera]		
Niben101Scf04641g02009.1	gb|ACN78838.1|	***-	alliinase [Allium sativum]	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016846 (carbon-sulfur lyase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf04820g03010.1			Unknown protein		
Niben101Scf03701g02002.1	sp|Q9M817|PTR6_ARATH	***-	Protein NRT1/ PTR FAMILY 1.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf07027g04003.1	sp|P48981|BGAL_MALDO	***-	Beta-galactosidase	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04950g04014.1			Unknown protein		
Niben101Scf06436g02006.1			Unknown protein		
Niben101Scf02945g00002.1	gb|KGN57146.1|	--*-	Nutrient reservoir [Cucumis sativus]		
Niben101Scf01124g27005.1	sp|Q9H0E7|UBP44_HUMAN	*-*-	Ubiquitin carboxyl-terminal hydrolase 44	IPR001607 (Zinc finger, UBP-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf10535g01012.1	AT5G04250.1	***-	Cysteine proteinases superfamily protein LENGTH=345	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf09433g01012.1	gb|AES62418.2|	***-	membrane-associated kinase regulator-like protein, putative [Medicago truncatula]		
Niben101Scf01247g04006.1	sp|Q6YYA3|CRS1_ORYSJ	***-	Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf01834g04013.1	sp|Q7WSY8|CLPB_PROFC	*-*-	Chaperone protein ClpB	IPR004176 (Clp, N-terminal), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0019538 (protein metabolic process)
Niben101Scf13230g01008.1	sp|P37965|GLPQ_BACSU	--**	Glycerophosphoryl diester phosphodiesterase	IPR004129 (Glycerophosphoryl diester phosphodiesterase)	GO:0006071 (glycerol metabolic process), GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity), GO:0008889 (glycerophosphodiester phosphodiesterase activity)
Niben101Scf01811g01009.1			Unknown protein		
Niben101Scf00481g03001.1	sp|Q501D5|MCMBP_ARATH	*-*-	Mini-chromosome maintenance complex-binding protein	IPR019140 (Mini-chromosome maintenance complex-binding protein)	
Niben101Scf06840g00008.1	sp|B0C1D5|RL23_ACAM1	--*-	50S ribosomal protein L23	IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01498g04001.1			Unknown protein		
Niben101Scf01942g05024.1	gb|AGL09506.1|	***-	male gametophyte defective 1, partial [Thottea sp. JN-2013]		
Niben101Scf02164g06008.1	sp|Q8GXL7|GAT24_ARATH	*-**	GATA transcription factor 24	IPR010399 (Tify), IPR010402 (CCT domain), IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05483g03009.1	sp|B5MFE9|OLFL3_XENLA	--*-	Olfactomedin-like protein 3		
Niben101Scf08812g00009.1	ref|NP_001052138.1|	***-	product [Oryza sativa Japonica Group]	IPR024145 (Histone deacetylase complex subunit SAP30/SAP30-like), IPR025718 (Histone deacetylase complex subunit SAP30, Sin3 binding domain)	GO:0005515 (protein binding)
Niben101Scf06305g01002.1			Unknown protein		
Niben101Scf03531g00014.1	gb|KEH33178.1|	--*-	leguminosin group485 secreted peptide [Medicago truncatula]		
Niben101Scf11232g01005.1	AT3G52990.1	*-**	Pyruvate kinase family protein LENGTH=527	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf01484g00008.1	AT2G35880.1	***-	TPX2 (targeting protein for Xklp2) protein family LENGTH=432	IPR027329 (TPX2, C-terminal domain)	
Niben101Scf09136g00004.1	sp|A1KNQ0|SAHH_MYCBP	****	Adenosylhomocysteinase	IPR000043 (Adenosylhomocysteinase), IPR016040 (NAD(P)-binding domain)	GO:0004013 (adenosylhomocysteinase activity), GO:0006730 (one-carbon metabolic process)
Niben101Scf01172g07011.1	sp|A7MFC3|MDTK_CROS8	*-*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03223g04011.1	gb|ABF97674.1|	--*-	expressed protein [Oryza sativa Japonica Group]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf05304g10017.1	sp|O48540|MAN1_SOLLC	***-	Mannan endo-1,4-beta-mannosidase 1	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00872g00005.1	AT1G25530.1	***-	Transmembrane amino acid transporter family protein LENGTH=440	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf06745g00001.1	emb|CDX96685.1|	*-*-	BnaA08g22280D [Brassica napus]		
Niben101Scf06245g01020.1	sp|O65819|H2B3_SOLLC	--*-	Histone H2B.3		
Niben101Scf05060g02010.1	sp|Q5EAR6|CC115_DANRE	-**-	Coiled-coil domain-containing protein 115		
Niben101Scf03469g04003.1	sp|Q9LUJ2|PP249_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf04760g00010.1	AT1G18450.1	***-	actin-related protein 4 LENGTH=441	IPR004000 (Actin family)	GO:0000812 (Swr1 complex), GO:0006281 (DNA repair), GO:0006338 (chromatin remodeling), GO:0006355 (regulation of transcription, DNA-templated), GO:0031011 (Ino80 complex), GO:0035267 (NuA4 histone acetyltransferase complex)
Niben101Scf07518g00004.1	sp|P05100|3MG1_ECOLI	****	DNA-3-methyladenine glycosylase 1	IPR005019 (Methyladenine glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0008725 (DNA-3-methyladenine glycosylase activity)
Niben101Scf00282g00002.1	AT5G62150.1	*-*-	peptidoglycan-binding LysM domain-containing protein LENGTH=102	IPR018392 (LysM domain)	
Niben101Scf07054g00003.1	AT4G19420.1	***-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf00046g07007.1	sp|Q9LS06|RAVL4_ARATH	--*-	AP2/ERF and B3 domain-containing transcription factor ARF14	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf01156g01001.1	gb|AIF73578.1|	*-*-	progesterone 5-beta-reductase [Digitalis lanata]		
Niben101Scf09788g00010.1	sp|Q55FS2|STK4L_DICDI	*-**	Serine/threonine-protein kinase 4 homolog B	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01764g00013.1	sp|A0MFS9|CACLC_ARATH	***-	Anoctamin-like protein	IPR007632 (Anoctamin)	
Niben101Scf00085g03007.1	sp|P54050|RL1_METJA	****	50S ribosomal protein L1	IPR023673 (Ribosomal protein L1, conserved site), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf00187g01019.1	ref|XP_003621871.1|	*-*-	Endo-1,4-beta-xylanase C [Medicago truncatula] gb|AES78089.1| glycosyl hydrolase family 10 protein [Medicago truncatula]	IPR017853 (Glycoside hydrolase superfamily)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf11806g00006.1	sp|Q39017|DGK1_ARATH	****	Diacylglycerol kinase 1	IPR000756 (Diacylglycerol kinase, accessory domain), IPR001206 (Diacylglycerol kinase, catalytic domain), IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol-binding domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process), GO:0035556 (intracellular signal transduction)
Niben101Scf03425g02002.1	AT1G34320.1	*-*-	Protein of unknown function (DUF668) LENGTH=657	IPR007700 (Protein of unknown function DUF668)	
Niben101Scf01054g03004.1	ref|XP_002521599.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF40870.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02043g01007.1	emb|CDY51861.1|	*-*-	BnaC03g77130D [Brassica napus]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf04171g01017.1	AT2G17840.1	***-	Senescence/dehydration-associated protein-related LENGTH=452	IPR009686 (Senescence/spartin-associated)	
Niben101Scf02381g03005.1	sp|Q9M884|MPI1_ARATH	****	Mannose-6-phosphate isomerase 1	IPR001250 (Mannose-6-phosphate isomerase, type I)	GO:0004476 (mannose-6-phosphate isomerase activity), GO:0005975 (carbohydrate metabolic process), GO:0008270 (zinc ion binding), GO:0009298 (GDP-mannose biosynthetic process)
Niben101Scf01249g06008.1	sp|O22881|POT2_ARATH	*-**	Potassium transporter 2	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf02947g01012.1	sp|Q8CGC6|RBM28_MOUSE	*-**	RNA-binding protein 28	IPR006509 (Splicing factor, RBM39-like), IPR029123 (Splicing factor RBM39, linker)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0006397 (mRNA processing)
Niben101Scf08319g00001.1			Unknown protein		
Niben101Scf10037g00002.1	AT5G22510.1	*-*-	alkaline/neutral invertase LENGTH=617	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf00302g01002.1	sp|Q86A67|ALF_DICDI	****	Fructose-bisphosphate aldolase	IPR000741 (Fructose-bisphosphate aldolase, class-I), IPR013785 (Aldolase-type TIM barrel), IPR029768 (Fructose-bisphosphate aldolase class-I active site)	GO:0003824 (catalytic activity), GO:0004332 (fructose-bisphosphate aldolase activity), GO:0006096 (glycolytic process)
Niben101Scf02502g15005.1	AT5G03795.1	***-	Exostosin family protein LENGTH=518	IPR004263 (Exostosin-like)	
Niben101Scf03425g02001.1	AT1G34320.1	***-	Protein of unknown function (DUF668) LENGTH=657	IPR007700 (Protein of unknown function DUF668), IPR021864 (Protein of unknown function DUF3475)	
Niben101Scf06286g01003.1			Unknown protein		
Niben101Scf02188g00007.1	ref|NP_001056054.1|	*-*-	OsJ_19217 [Oryza sativa Japonica Group]		
Niben101Scf06004g00023.1	sp|Q9SXD8|PPR90_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03885g09007.1	sp|O64650|RS271_ARATH	***-	40S ribosomal protein S27-1	IPR000592 (Ribosomal protein S27e), IPR023407 (Ribosomal protein S27e, zinc-binding domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07115g00029.1	sp|Q9Y896|ACT2_SCHCO	*-*-	Actin-2	IPR004000 (Actin family)	
Niben101Scf01789g02045.1	sp|O80786|MCM5_ARATH	****	DNA replication licensing factor MCM5	IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027925 (MCM N-terminal domain)	GO:0003677 (DNA binding), GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006270 (DNA replication initiation), GO:0042555 (MCM complex)
Niben101Scf03562g01003.1			Unknown protein		
Niben101Scf01203g01009.1	sp|Q02614|S30BP_MOUSE	*-*-	SAP30-binding protein	IPR012479 (SAP30-binding protein)	GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06186g06008.1	sp|Q9Y6E0|STK24_HUMAN	*-**	Serine/threonine-protein kinase 24	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01418g02006.1	sp|E6Y2X0|PILR2_LINUS	***-	Bifunctional pinoresinol-lariciresinol reductase 2	IPR016040 (NAD(P)-binding domain)	
Niben101Scf04732g00004.1			Unknown protein		
Niben101Scf08758g02006.1	sp|Q6L8F9|ZIP6_ORYSJ	*-**	Zinc transporter 6	IPR003689 (Zinc/iron permease)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02679g01013.1	AT5G16520.1	***-	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=608		
Niben101Scf09063g00003.1	AT1G53570.1	****	mitogen-activated protein kinase kinase kinase 3 LENGTH=609	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08294g07003.1	sp|Q9SJB4|GDL34_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00576g02004.1	sp|P84634|DCL4_ARATH	--*-	Dicer-like protein 4		
Niben101Scf07231g02016.1	sp|Q9M5Q1|FUT1_PEA	****	Galactoside 2-alpha-L-fucosyltransferase	IPR004938 (Xyloglucan fucosyltransferase)	GO:0008107 (galactoside 2-alpha-L-fucosyltransferase activity), GO:0016020 (membrane), GO:0042546 (cell wall biogenesis)
Niben101Scf06203g01013.1	sp|Q9LV48|PERK1_ARATH	--*-	Proline-rich receptor-like protein kinase PERK1		
Niben101Scf02381g07006.1	sp|Q754B9|ERG3_ASHGO	***-	C-5 sterol desaturase	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01785g01009.1	sp|P55004|PHYE_IPONI	***-	Phytochrome E	IPR001294 (Phytochrome), IPR005467 (Signal transduction histidine kinase, core), IPR029016 (GAF domain-like)	GO:0000155 (phosphorelay sensor kinase activity), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0007165 (signal transduction), GO:0009584 (detection of visible light), GO:0009585 (red, far-red light phototransduction), GO:0009881 (photoreceptor activity), GO:0016020 (membrane), GO:0017006 (protein-tetrapyrrole linkage), GO:0018298 (protein-chromophore linkage), GO:0042803 (protein homodimerization activity)
Niben101Scf07645g00004.1	AT2G37420.1	****	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf05044g04033.1	AT1G79915.1	***-	Putative methyltransferase family protein LENGTH=312	IPR019410 (Nicotinamide N-methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01394g01018.1	sp|Q3MKB9|MATK_POROL	--*-	Maturase K	IPR024942 (Maturase MatK, N-terminal domain)	
Niben101Scf00251g00005.1	sp|A3LNR4|EFG1P_PICST	--*-	rRNA-processing protein EFG1	IPR019310 (rRNA-processing protein EFG1)	
Niben101Scf10332g02006.1	AT1G18160.1	*-**	Protein kinase superfamily protein LENGTH=992	IPR011009 (Protein kinase-like domain), IPR016253 (Integrin-linked protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0009966 (regulation of signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00024g02024.1	gb|EEQ88451.1|	--*-	conserved hypothetical protein [Ajellomyces dermatitidis ER-3]		
Niben101Scf10015g09016.1	sp|Q6AY41|CC50A_RAT	***-	Cell cycle control protein 50A	IPR005045 (CDC50/LEM3 family)	GO:0016020 (membrane)
Niben101Scf00868g06002.1	emb|CAE01801.2|	***-	product [Oryza sativa Japonica Group]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf09447g00004.1	ref|XP_002510111.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF52298.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02456g00019.1			Unknown protein		
Niben101Scf01569g01001.1	sp|P10973|NLTPA_RICCO	***-	Non-specific lipid-transfer protein A	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00712g05034.1	sp|A4IMI1|MUTL_GEOTN	--**	DNA mismatch repair protein MutL	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR028831 (DNA mismatch repair protein Pms1/Pms2)	GO:0006298 (mismatch repair), GO:0032300 (mismatch repair complex)
Niben101Scf13361g00004.1	sp|Q7MH54|RRAA_VIBVY	****	Regulator of ribonuclease activity A	IPR005493 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase), IPR010203 (Regulator of ribonuclease activity A)	GO:0008428 (ribonuclease inhibitor activity), GO:0051252 (regulation of RNA metabolic process)
Niben101Scf03021g00009.1	gb|KEH32728.1|	***-	homeobox/lipid-binding domain protein [Medicago truncatula]	IPR023393 (START-like domain)	
Niben101Scf04044g00001.1	ref|XP_007009042.1|	--*-	Ethylene-dependent gravitropism-deficient and yellow-green-like 2 isoform 1 [Theobroma cacao] gb|EOY17852.1| Ethylene-dependent gravitropism-deficient and yellow-green-like 2 isoform 1 [Theobroma cacao]		
Niben101Scf03643g09016.1	gb|AES82432.2|	***-	heparan-alpha-glucosaminide N-acetyltransferase-like protein [Medicago truncatula]		
Niben101Scf05437g06004.1	dbj|BAD09079.1|	*-**	nucleic acid-binding protein-like [Oryza sativa Japonica Group]	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03377g02012.1	sp|Q5E9F6|VPS72_BOVIN	*-*-	Vacuolar protein sorting-associated protein 72 homolog	IPR008895 (YL1 nuclear), IPR013272 (YL1 nuclear, C-terminal)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01916g00004.1	sp|Q33DL3|CFI_TOBAC	*-**	Chalcone--flavonone isomerase	IPR016087 (Chalcone isomerase)	GO:0009813 (flavonoid biosynthetic process), GO:0016872 (intramolecular lyase activity), GO:0045430 (chalcone isomerase activity)
Niben101Scf00681g00006.1	AT3G27550.1	*-*-	RNA-binding CRS1 / YhbY (CRM) domain protein LENGTH=491		
Niben101Scf09331g00011.1	AT3G51470.1	*-*-	Protein phosphatase 2C family protein LENGTH=361	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf05709g01021.1	sp|Q9SUI6|PSAH2_ARATH	****	Photosystem I reaction center subunit VI-2, chloroplastic	IPR004928 (Photosystem I PsaH, reaction centre subunit VI), IPR023833 (Signal peptide, camelysin), IPR029027 (Single alpha-helix domain)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf05929g07006.1	emb|CDY18244.1|	***-	BnaC05g02670D [Brassica napus]		
Niben101Scf01319g03002.1			Unknown protein		
Niben101Scf05230g01007.1	sp|Q9LY87|RGLG2_ARATH	***-	E3 ubiquitin-protein ligase RGLG2	IPR002035 (von Willebrand factor, type A), IPR010734 (Copine), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08833g03002.1	emb|CDY64871.1|	***-	BnaC05g50160D [Brassica napus]	IPR008511 (Protein BYPASS-related)	
Niben101Scf22566g00015.1	AT1G53780.2	*-**	peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases LENGTH=620	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029067 (CDC48 domain 2-like)	GO:0005524 (ATP binding)
Niben101Scf04607g04013.1	sp|Q9FJW4|NDUS4_ARATH	***-	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial	IPR006885 (NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0022900 (electron transport chain)
Niben101Scf01695g03013.1	AT3G16060.1	****	ATP binding microtubule motor family protein LENGTH=684	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00726g00012.1	sp|Q9FK68|RAA1C_ARATH	--*-	Ras-related protein RABA1c		
Niben101Scf04659g00004.1	sp|P84977|GRP3_POPEU	*-**	Glycine-rich RNA-binding protein 3 (Fragments)	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02068g03005.1	AT3G04020.1	***-	unknown protein; Has 26 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). LENGTH=304	IPR012349 (FMN-binding split barrel)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05980g00005.1	sp|P50165|TRNH_DATST	****	Tropinone reductase homolog	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf06579g01017.1	AT5G11380.1	****	1-deoxy-D-xylulose 5-phosphate synthase 3 LENGTH=700	IPR005477 (Deoxyxylulose-5-phosphate synthase), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0008661 (1-deoxy-D-xylulose-5-phosphate synthase activity), GO:0016114 (terpenoid biosynthetic process)
Niben101Scf05404g04007.1	AT2G37840.1	****	Protein kinase superfamily protein LENGTH=733	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf16154g00002.1			Unknown protein		
Niben101Scf01983g01022.1	sp|Q53B75|CF1B1_SOYBN	****	Chalcone--flavonone isomerase 1B-1	IPR016087 (Chalcone isomerase)	GO:0009813 (flavonoid biosynthetic process), GO:0016872 (intramolecular lyase activity), GO:0045430 (chalcone isomerase activity)
Niben101Scf09101g03002.1	sp|P02993|EF1A_ARTSA	*-*-	Elongation factor 1-alpha	IPR000795 (Elongation factor, GTP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf01968g00008.1	AT5G44500.1	*-*-	Small nuclear ribonucleoprotein family protein LENGTH=254	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf00674g02006.1	ref|NP_001279484.1|	****	CCHC-type zinc finger, nucleic acid binding protein [Callorhinchus milii] gb|AFM89464.1| cellular nucleic acid-binding protein-like protein [Callorhinchus milii]	IPR001878 (Zinc finger, CCHC-type), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf00079g00013.1	AT1G37130.1	****	nitrate reductase 2 LENGTH=917	IPR008335 (Eukaryotic molybdopterin oxidoreductase), IPR014756 (Immunoglobulin E-set)	GO:0009055 (electron carrier activity), GO:0016491 (oxidoreductase activity), GO:0030151 (molybdenum ion binding), GO:0043546 (molybdopterin cofactor binding), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00337g03002.1	AT5G08120.1	***-	movement protein binding protein 2C LENGTH=326		
Niben101Scf05294g00030.1	AT1G68940.3	*-*-	Armadillo/beta-catenin-like repeat family protein LENGTH=1061	IPR016024 (Armadillo-type fold), IPR029159 (Casein Kinase 2 substrate)	GO:0005488 (binding)
Niben101Scf08419g01022.1	sp|Q5ZM74|RN141_CHICK	*-*-	RING finger protein 141	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05487g01001.1	sp|Q6P298|NUBP1_DANRE	***-	Cytosolic Fe-S cluster assembly factor nubp1	IPR019591 (Mrp/NBP35 ATP-binding protein), IPR025669 (AAA domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf05030g01004.1	AT5G62350.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=202	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf07850g05006.1	AT2G01610.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=222	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf04802g00001.1	gb|AES62511.2|	--*-	ATP-binding protein, putative [Medicago truncatula]		
Niben101Ctg10227g00001.1	sp|Q8LDW9|XTH9_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 9	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf14329g00002.1	sp|Q9C7A8|PSF2_ARATH	****	DNA replication complex GINS protein PSF2	IPR021151 (GINS complex)	GO:0005634 (nucleus), GO:0006260 (DNA replication)
Niben101Scf02818g00005.1	emb|CDY37278.1|	***-	BnaA01g24980D [Brassica napus]		
Niben101Scf06866g00001.1	sp|A5WCI2|GATA_PSYWF	*-*-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf06726g00018.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR009854 (Orthoreovirus membrane fusion p10), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05306g02022.1	AT5G18520.1	***-	Lung seven transmembrane receptor family protein LENGTH=440	IPR009637 (Transmembrane receptor, eukaryota)	GO:0016021 (integral component of membrane)
Niben101Ctg16222g00005.1	AT5G04730.1	*-*-	Ankyrin-repeat containing protein LENGTH=603	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	GO:0005515 (protein binding)
Niben101Scf02831g02020.1	AT1G72790.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=561	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf08026g02006.1	sp|O23140|AP2M_ARATH	****	AP-2 complex subunit mu	IPR001392 (Clathrin adaptor, mu subunit), IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf14939g01014.1	AT3G27090.1	***-	DCD (Development and Cell Death) domain protein LENGTH=296	IPR013989 (Development/cell death domain)	
Niben101Ctg12033g00001.1	sp|Q9XEX2|PRX2B_ARATH	***-	Peroxiredoxin-2B	IPR012336 (Thioredoxin-like fold)	GO:0016491 (oxidoreductase activity)
Niben101Scf05955g03051.1	gb|KEY48292.1|	***-	phosphohydrolase [Streptococcus equinus]	IPR003607 (HD/PDEase domain)	
Niben101Scf10015g05003.1	sp|Q07761|RL23A_TOBAC	***-	60S ribosomal protein L23a	IPR005633 (Ribosomal protein L23/L25, N-terminal), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00299g00014.1	sp|Q6CFJ0|FIS1_YARLI	--**	Mitochondria fission 1 protein	IPR016543 (Mitochondria fission 1 protein), IPR028058 (Fis1, N-terminal tetratricopeptide repeat), IPR028061 (Fis1, C-terminal tetratricopeptide repeat)	GO:0000266 (mitochondrial fission), GO:0005515 (protein binding)
Niben101Scf01759g04008.1	sp|Q9BGI3|PRDX2_BOVIN	*-*-	Peroxiredoxin-2	IPR012336 (Thioredoxin-like fold)	GO:0016209 (antioxidant activity), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07739g00014.1	sp|Q8VWK4|TRB1_ARATH	****	Telomere repeat-binding factor 1	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf01890g03017.1	sp|Q7TX14|NUDC_MYCBO	*-*-	NADH pyrophosphatase	IPR015375 (NADH pyrophosphatase-like, N-terminal), IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf04044g13020.1			Unknown protein		
Niben101Scf00684g02005.1	sp|Q8L850|PI5K9_ARATH	****	Phosphatidylinositol 4-phosphate 5-kinase 9	IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf05566g02010.1	sp|Q39214|RPM1_ARATH	*-*-	Disease resistance protein RPM1		
Niben101Scf09955g01010.1	sp|P44933|KEFX_HAEIN	--*-	Glutathione-regulated potassium-efflux system protein	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf07980g02002.1	sp|Q15572|TAF1C_HUMAN	--*-	TATA box-binding protein-associated factor RNA polymerase I subunit C		
Niben101Scf04325g01005.1	ref|XP_007029831.1|	****	Prefoldin chaperone subunit family protein [Theobroma cacao] gb|EOY10333.1| Prefoldin chaperone subunit family protein [Theobroma cacao]	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex), GO:0051082 (unfolded protein binding)
Niben101Scf05767g01014.1	sp|Q67ZM4|ADF7_ARATH	****	Actin-depolymerizing factor 7	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf06683g05002.1	dbj|BAH20020.1|	--*-	[Arabidopsis thaliana]		
Niben101Scf07841g02012.1	sp|Q9LUL5|PP229_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf08894g01004.1	sp|Q9LX73|UFL1_ARATH	***-	E3 UFM1-protein ligase 1 homolog	IPR018611 (E3 UFM1-protein ligase 1)	
Niben101Scf05675g00006.1	AT5G28830.1	***-	calcium-binding EF hand family protein LENGTH=324		
Niben101Scf02622g12006.1	sp|Q8DLG8|ATPB_THEEB	*-**	ATP synthase subunit beta	IPR005722 (ATPase, F1 complex, beta subunit)	GO:0015986 (ATP synthesis coupled proton transport), GO:0015992 (proton transport), GO:0046034 (ATP metabolic process), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Scf04396g02013.1	AT3G02030.1	*-**	transferases, transferring acyl groups other than amino-acyl groups;acyltransferases LENGTH=662	IPR007130 (Diacylglycerol acyltransferase)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03850g03025.1	AT5G42050.1	***-	DCD (Development and Cell Death) domain protein LENGTH=349	IPR013989 (Development/cell death domain)	
Niben101Scf01506g03024.1	AT1G31670.1	*-**	Copper amine oxidase family protein LENGTH=741	IPR000269 (Copper amine oxidase)	GO:0005507 (copper ion binding), GO:0008131 (primary amine oxidase activity), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding), GO:0055114 (oxidation-reduction process)
Niben101Scf12582g01001.1			Unknown protein		
Niben101Scf02451g06020.1	sp|Q9LVP1|TOP3A_ARATH	*-**	DNA topoisomerase 3-alpha	IPR000380 (DNA topoisomerase, type IA), IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003917 (DNA topoisomerase type I activity), GO:0006265 (DNA topological change), GO:0008270 (zinc ion binding)
Niben101Scf12017g00010.1	sp|Q6GIA3|FABF_STAAR	***-	3-oxoacyl-[acyl-carrier-protein] synthase 2	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf14470g00011.1	gb|ACN57082.1|	--*-	At1g06530-like protein [Capsella grandiflora]		
Niben101Scf02537g03012.1	sp|Q6PFM0|JMJD6_DANRE	*-*-	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6	IPR001810 (F-box domain), IPR003347 (JmjC domain), IPR011009 (Protein kinase-like domain)	GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04040g06005.1	sp|Q9CAJ0|P2C16_ARATH	****	Protein phosphatase 2C 16	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf01178g01007.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf14070g00001.1	sp|P57057|GLPT_HUMAN	****	Glycerol-3-phosphate transporter	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf25157g00010.1	sp|Q8K9H6|DEAD_BUCAP	*-**	ATP-dependent RNA helicase DeaD	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf04082g02021.1	sp|C5CGI6|RL18_KOSOT	***-	50S ribosomal protein L18	IPR005484 (Ribosomal protein L18/L5)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00503g10011.1	AT4G05400.1	***-	copper ion binding LENGTH=250		
Niben101Scf00755g00004.1			Unknown protein		
Niben101Scf03732g02015.1	ref|NP_001060667.1|	*-*-	product [Oryza sativa Japonica Group]	IPR000772 (Ricin B lectin domain)	
Niben101Scf01146g12009.1			Unknown protein		
Niben101Scf04114g00062.1			Unknown protein		
Niben101Scf00691g02030.1			Unknown protein		
Niben101Scf18540g00008.1	sp|Q8VZK9|CSLE1_ARATH	*-**	Cellulose synthase-like protein E1	IPR005150 (Cellulose synthase)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf05937g02016.1	sp|Q8LBW3|LBD12_ARATH	*-*-	LOB domain-containing protein 12	IPR004883 (Lateral organ boundaries, LOB), IPR029016 (GAF domain-like)	
Niben101Scf00202g05007.1	gb|KGD87705.1|	****	diaminopimelate decarboxylase [Rhizobium sp. YS-1r]	IPR000183 (Ornithine/DAP/Arg decarboxylase), IPR000398 (Thymidylate synthase), IPR023451 (Thymidylate synthase/dCMP hydroxymethylase domain), IPR029066 (PLP-binding barrel)	GO:0003824 (catalytic activity), GO:0004799 (thymidylate synthase activity), GO:0006231 (dTMP biosynthetic process), GO:0008836 (diaminopimelate decarboxylase activity), GO:0009089 (lysine biosynthetic process via diaminopimelate)
Niben101Scf02737g02001.1	gb|AAK51235.1|AF287471_1	*-*-	polyprotein [Arabidopsis thaliana]	IPR029472 (Gag-polypeptide of LTR copia-type)	
Niben101Scf01291g04003.1	sp|Q16NZ8|SCC4_AEDAE	*-*-	MAU2 chromatid cohesion factor homolog	IPR011990 (Tetratricopeptide-like helical domain), IPR019440 (Cohesin loading factor)	GO:0005515 (protein binding)
Niben101Scf01267g03005.1	sp|Q5SM25|NRNA_THET8	--*-	Bifunctional oligoribonuclease and PAP phosphatase NrnA		
Niben101Scf00063g10026.1	ref|XP_002531850.1|	*-**	calcium ion binding protein, putative [Ricinus communis] gb|EEF30528.1| calcium ion binding protein, putative [Ricinus communis]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01848g05007.1	emb|CDX70437.1|	***-	BnaC03g05210D [Brassica napus]	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf04099g05004.1	sp|P93194|RPK1_IPONI	****	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05682g00014.1	sp|O81211|RBOHE_ARATH	****	Respiratory burst oxidase homolog protein E	IPR000778 (Cytochrome b245, heavy chain), IPR011992 (EF-hand domain pair), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0004601 (peroxidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0050664 (oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf11670g03002.1	sp|Q84WP6|NAC43_ARATH	***-	NAC domain-containing protein 43	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf33628g00013.1	sp|Q6DCY9|HAUS3_XENLA	****	HAUS augmin-like complex subunit 3	IPR026206 (HAUS augmin-like complex subunit 3)	GO:0051225 (spindle assembly), GO:0070652 (HAUS complex)
Niben101Scf07611g02006.1	sp|O49250|CYCLD_ANTMA	*-*-	Transcription factor CYCLOIDEA	IPR005333 (Transcription factor, TCP)	
Niben101Scf02772g03002.1	gb|ADK97910.1|	*-*-	LuxR family transcriptional regulator [Schiedea globosa]		
Niben101Scf01438g03006.1	AT2G18840.1	****	Integral membrane Yip1 family protein LENGTH=281	IPR006977 (Yip1 domain)	GO:0016020 (membrane)
Niben101Scf01267g05006.1	sp|O75400|PR40A_HUMAN	*-*-	Pre-mRNA-processing factor 40 homolog A	IPR001202 (WW domain), IPR027237 (Pre-mRNA-processing protein PRP40)	GO:0005515 (protein binding)
Niben101Scf06949g00004.1	sp|Q2Y9Y7|BIOH_NITMU	***-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03987g02003.1	AT3G57550.2	****	guanylate kinase LENGTH=390	IPR008144 (Guanylate kinase-like), IPR008145 (Guanylate kinase/L-type calcium channel beta subunit), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015915 (Kelch-type beta propeller), IPR017665 (Guanylate kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004385 (guanylate kinase activity), GO:0005515 (protein binding), GO:0006163 (purine nucleotide metabolic process)
Niben101Scf03824g02012.1	sp|Q9UI14|PRAF1_HUMAN	--*-	Prenylated Rab acceptor protein 1	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf17688g00014.1	sp|Q8LGE7|NDA8B_ARATH	***-	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B	IPR010625 (CHCH)	
Niben101Scf07044g03003.1	AT1G23000.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=358	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf02402g01005.1			Unknown protein		
Niben101Scf10048g00002.1	sp|Q8H125|SCL5_ARATH	***-	Scarecrow-like protein 5	IPR005202 (Transcription factor GRAS), IPR030018 (Scarecrow-like protein 5/chitin-inducible gibberellin-responsive protein 2)	
Niben101Scf07165g01002.1	sp|Q9XEG7|RS3A_TORRU	***-	40S ribosomal protein S3a	IPR001593 (Ribosomal protein S3Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09475g00007.1	AT1G19100.1	***-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=663	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf00975g01015.1	sp|Q9LYN8|EXS_ARATH	*-*-	Leucine-rich repeat receptor protein kinase EXS	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf00069g01009.1	sp|B1XHZ3|ATP61_SYNP2	*-**	ATP synthase subunit a 1	IPR000568 (ATPase, F0 complex, subunit A)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf18175g01005.1	sp|Q94AU2|SEC22_ARATH	--*-	25.3 kDa vesicle transport protein		
Niben101Scf06078g00003.1	sp|A5G0G7|RL19_ACICJ	***-	50S ribosomal protein L19	IPR001857 (Ribosomal protein L19), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06221g03002.1	sp|A5VSE3|ATPA_BRUO2	****	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf07007g01009.1			Unknown protein		
Niben101Scf09778g00017.1	AT1G32490.1	*-*-	RNA helicase family protein LENGTH=1044		
Niben101Scf06814g01001.1	AT2G35490.1	***-	Plastid-lipid associated protein PAP / fibrillin family protein LENGTH=376	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf06291g03020.1	ref|XP_002530460.1|	*-**	transcription cofactor, putative [Ricinus communis] gb|EEF31930.1| transcription cofactor, putative [Ricinus communis]	IPR003101 (Coactivator CBP, KIX domain)	GO:0003712 (transcription cofactor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11978g04001.1	sp|Q9M817|PTR6_ARATH	***-	Protein NRT1/ PTR FAMILY 1.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf03100g01012.1	sp|Q9FNL7|PTR3_ARATH	***-	Protein NRT1/ PTR FAMILY 5.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf23098g00006.1	sp|A2AQ19|RTF1_MOUSE	*-*-	RNA polymerase-associated protein RTF1 homolog	IPR004343 (Plus-3)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006352 (DNA-templated transcription, initiation), GO:0016570 (histone modification)
Niben101Scf18401g00009.1	AT1G09750.1	***-	Eukaryotic aspartyl protease family protein LENGTH=449	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03350g04008.1	AT5G12040.1	***-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein LENGTH=369	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf06774g02012.1	AT4G26540.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1091	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf11124g01015.1	gb|AEE81066.1|	*-**	ubiquitin-protein ligase/zinc ion binding protein [Triticum aestivum]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf37484g00001.1	sp|P0C5B0|MADS7_ORYSI	*-*-	MADS-box transcription factor 7	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03202g13014.1	ref|NP_001059890.1|	*-*-	OsJ_24600 [Oryza sativa Japonica Group]	IPR023241 (FAM175 family, plant)	
Niben101Scf00202g01013.1	sp|Q84V03|FB348_ARATH	*-*-	F-box protein		
Niben101Scf11676g00009.1	AT5G27240.1	*-*-	DNAJ heat shock N-terminal domain-containing protein LENGTH=1104	IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf03736g02012.1	sp|E4QHI6|GUAA_BORBN	*-*-	GMP synthase [glutamine-hydrolyzing]	IPR029062 (Class I glutamine amidotransferase-like)	
Niben101Scf04569g01003.1	sp|Q9SUI5|PSAK_ARATH	****	Photosystem I reaction center subunit psaK, chloroplastic	IPR000549 (Photosystem I PsaG/PsaK protein), IPR023618 (Photosystem I PsaG/PsaK domain)	GO:0009522 (photosystem I), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0016168 (chlorophyll binding)
Niben101Scf06412g03018.1	sp|O22893|GOLS1_ARATH	***-	Galactinol synthase 1	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf14041g01016.1	sp|A8MQA3|PP330_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06867g03004.1			Unknown protein		
Niben101Scf34790g00005.1	AT5G02890.1	*-**	HXXXD-type acyl-transferase family protein LENGTH=353	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01460g02004.1	AT4G13050.1	*-*-	Acyl-ACP thioesterase LENGTH=367	IPR002864 (Acyl-ACP thioesterase), IPR029069 (HotDog domain)	GO:0006633 (fatty acid biosynthetic process), GO:0016790 (thiolester hydrolase activity)
Niben101Scf00046g09009.1	sp|B9SLR1|Y231_RICCO	***-	UPF0392 protein RCOM_0530710	IPR008166 (Domain of unknown function DUF23)	
Niben101Scf08321g06001.1	sp|O81829|GH35_ARATH	***-	Indole-3-acetic acid-amido synthetase GH3.5	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf03150g07003.1	AT3G46340.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=889	IPR001611 (Leucine-rich repeat), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0005515 (protein binding)
Niben101Scf07682g01004.1	sp|O81263|KITH_ORYSJ	****	Thymidine kinase	IPR001267 (Thymidine kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004797 (thymidine kinase activity), GO:0005524 (ATP binding)
Niben101Scf07004g01004.1	AT1G47420.1	***-	succinate dehydrogenase 5 LENGTH=257	IPR025397 (Protein of unknown function DUF4370)	
Niben101Scf02594g07008.1	sp|Q93VH2|BBD2_ARATH	****	Bifunctional nuclease 2	IPR003729 (Bifunctional nuclease domain)	GO:0004518 (nuclease activity)
Niben101Scf01748g03002.1	AT1G30710.1	****	FAD-binding Berberine family protein LENGTH=531	IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05437g03003.1	sp|P74227|EFTU_SYNY3	****	Elongation factor Tu	IPR004541 (Translation elongation factor EFTu/EF1A, bacterial/organelle), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006414 (translational elongation)
Niben101Scf00069g08002.1	sp|Q9LSL1|BH093_ARATH	*-*-	Transcription factor bHLH93	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf11805g00001.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00069g15007.1	sp|Q6ZNW5|GDPP1_HUMAN	****	GDP-D-glucose phosphorylase 1	IPR026506 (GDP-L-galactose/GDP-D-glucose phosphorylase)	GO:0080048 (GDP-D-glucose phosphorylase activity)
Niben101Scf00298g02021.1	AT3G14080.1	***-	Small nuclear ribonucleoprotein family protein LENGTH=128	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf01721g10021.1	gb|KEH35956.1|	*-*-	zinc finger (C3HC4-type RING finger) family protein [Medicago truncatula]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf00063g06040.1	ref|NP_001052354.1|	***-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf03000g01002.1	AT2G04030.1	***-	Chaperone protein htpG family protein LENGTH=780	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf02220g02002.1	sp|O80470|GDL38_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00317g00008.1	tpg|DAA62228.1|	--*-	TPA: hypothetical protein ZEAMMB73_029653 [Zea mays] tpg|DAA62229.1| TPA: hypothetical protein ZEAMMB73_029653 [Zea mays]		
Niben101Scf05609g00009.1			Unknown protein		
Niben101Scf01521g13011.1	sp|Q9CAR3|KINGL_ARATH	*-*-	SNF1-related protein kinase regulatory subunit gamma-1-like	IPR000644 (CBS domain)	
Niben101Scf05821g01007.1	sp|Q9XGY4|TIM8_ARATH	***-	Mitochondrial import inner membrane translocase subunit TIM8	IPR004217 (Tim10/DDP family zinc finger)	
Niben101Scf02909g06003.1	emb|CDY02362.1|	***-	BnaA09g25400D [Brassica napus]		
Niben101Scf06806g02003.1	sp|Q9SKB3|PARG1_ARATH	*-**	Poly(ADP-ribose) glycohydrolase 1	IPR007724 (Poly(ADP-ribose) glycohydrolase)	GO:0004649 (poly(ADP-ribose) glycohydrolase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf11245g03006.1	AT3G49670.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1002		
Niben101Scf00090g07001.1	AT5G05690.1	***-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01551g00012.1	ref|NP_001051816.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf00883g16003.1	AT2G21100.1	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=187	IPR004265 (Plant disease resistance response protein)	
Niben101Scf25021g01016.1	sp|Q9SQL2|CB24_PEA	***-	Chlorophyll a-b binding protein P4, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf04475g00006.1	gb|AFW73534.1|	*-*-	threonine endopeptidase [Zea mays]	IPR025564 (Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain)	
Niben101Scf06564g00003.1	sp|O21280|CCMA_RECAM	****	Cytochrome c biogenesis ATP-binding export protein CcmA	IPR005895 (ABC transporter, haem export, CcmA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005215 (transporter activity), GO:0005524 (ATP binding), GO:0016887 (ATPase activity), GO:0017004 (cytochrome complex assembly), GO:0030288 (outer membrane-bounded periplasmic space)
Niben101Scf04217g05006.1	AT1G12310.1	****	Calcium-binding EF-hand family protein LENGTH=148	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf08531g03004.1	sp|O49255|NAC29_ARATH	--**	NAC transcription factor 29	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01642g00020.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf12841g03023.1	sp|Q9ZV88|BEH4_ARATH	***-	BES1/BZR1 homolog protein 4	IPR008540 (BZR1, transcriptional repressor)	
Niben101Scf03951g02013.1	emb|CDY52343.1|	***-	BnaA09g38920D [Brassica napus]		
Niben101Scf03823g02014.1	AT1G53860.1	***-	Remorin family protein LENGTH=442		
Niben101Scf05412g00011.1	emb|CDY07628.1|	*-*-	BnaA03g18830D [Brassica napus]		
Niben101Scf03371g01017.1	gb|ABV25452.1|	***-	X4 protein [Silene vulgaris]	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf08519g03002.1	sp|Q402F3|TOM3_TOBAC	***-	Tobamovirus multiplication protein 3	IPR009457 (Domain of unknown function DUF1084)	
Niben101Scf02069g00025.1	sp|C1BK83|SEH1_OSMMO	***-	Nucleoporin seh1	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf07226g02004.1	sp|Q3LFU0|CP1A1_BALAC	--*-	Cytochrome P450 1A1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00176g05004.1	sp|P12301|PSBQ_SPIOL	****	Oxygen-evolving enhancer protein 3, chloroplastic	IPR008797 (Photosystem II PsbQ, oxygen evolving complex), IPR023222 (PsbQ-like domain)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf01817g02001.1	sp|Q9SWE7|VATE_CITLI	****	V-type proton ATPase subunit E	IPR002842 (ATPase, V1/A1 complex, subunit E)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf01513g00008.1	ref|WP_004591854.1|	--*-	ABC transporter, partial [Methanocaldococcus villosus] gb|ENN96110.1| ABC transporter, partial [Methanocaldococcus villosus KIN24-T80]		
Niben101Scf01677g02009.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf13874g01001.1	ref|XP_002517792.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF44599.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf16915g01014.1	sp|Q32LA7|H2AV_BOVIN	***-	Histone H2A.V	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf04294g06006.1	sp|Q8BFW9|GTR12_MOUSE	*-**	Solute carrier family 2, facilitated glucose transporter member 12	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00202g01014.1	sp|Q9ZPV9|SY112_ARATH	***-	Syntaxin-112	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf00338g00016.1	AT1G74780.1	*-*-	Nodulin-like / Major Facilitator Superfamily protein LENGTH=533	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf02090g04005.1	sp|P27777|HS16A_ORYSJ	*-*-	16.9 kDa class I heat shock protein 1	IPR008978 (HSP20-like chaperone)	
Niben101Scf00063g07011.1	sp|Q9FLJ2|NC100_ARATH	***-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02714g06023.1	sp|P52948|NUP98_HUMAN	*-**	Nuclear pore complex protein Nup98-Nup96	IPR007230 (Peptidase S59, nucleoporin)	GO:0005643 (nuclear pore), GO:0006810 (transport)
Niben101Scf00508g01017.1	emb|CDY39049.1|	***-	BnaA02g17380D [Brassica napus]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf02474g01020.1	AT3G18430.1	****	Calcium-binding EF-hand family protein LENGTH=175	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00744g02003.1	AT4G24490.1	****	RAB geranylgeranyl transferase alpha subunit 1 LENGTH=678	IPR001611 (Leucine-rich repeat), IPR002088 (Protein prenyltransferase, alpha subunit), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding), GO:0008318 (protein prenyltransferase activity), GO:0018342 (protein prenylation)
Niben101Scf02826g00008.1	sp|Q69Q47|CIPKO_ORYSJ	****	CBL-interacting protein kinase 24	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00820g08008.1	tpg|DAA37534.1|	***-	TPA: hypothetical protein ZEAMMB73_624311 [Zea mays]		
Niben101Scf04104g05004.1	AT2G44830.1	****	Protein kinase superfamily protein LENGTH=765	IPR011009 (Protein kinase-like domain), IPR011993 (Pleckstrin homology-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11103g01013.1	sp|Q8T135|KIF5_DICDI	*-**	Kinesin-related protein 5	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf01281g02006.1	sp|Q47N43|RUVB_THEFY	--**	Holliday junction ATP-dependent DNA helicase RuvB	IPR010339 (TIP49, C-terminal), IPR027238 (RuvB-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0043141 (ATP-dependent 5'-3' DNA helicase activity)
Niben101Scf02335g04010.1	gb|ADL60215.1|	*-*-	beta-hydroxyacyl-ACP dehydratase [Helianthus annuus]		
Niben101Scf17976g00005.1	sp|E9QAU8|RN165_MOUSE	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02914g02042.1	AT5G50350.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). LENGTH=584		
Niben101Scf02375g02013.1	emb|CDY25634.1|	*-*-	BnaA04g13260D [Brassica napus]		
Niben101Scf06221g04039.1			Unknown protein		
Niben101Scf01759g04003.1	sp|Q9SKN2|DRB2_ARATH	***-	Double-stranded RNA-binding protein 2	IPR014720 (Double-stranded RNA-binding domain)	
Niben101Scf04162g00001.1	sp|Q38857|XTH22_ARATH	*-**	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07391g04002.1	sp|Q5XI55|NGLY1_RAT	--*-	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase		
Niben101Scf11702g00019.1	sp|Q5HZP1|RNH2B_XENLA	*-*-	Ribonuclease H2 subunit B	IPR019024 (Ribonuclease H2, subunit B)	GO:0005634 (nucleus)
Niben101Scf00747g10005.1	gb|AIW50155.1|	*-*-	erect panicle 2 protein, partial [Miscanthus ecklonii]		
Niben101Scf01406g03019.1	sp|B7VKW7|F16PA_VIBTL	****	Fructose-1,6-bisphosphatase class 1	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf03561g01020.1	sp|P74290|FPG_SYNY3	*-**	Formamidopyrimidine-DNA glycosylase	IPR010979 (Ribosomal protein S13-like, H2TH), IPR012319 (DNA glycosylase/AP lyase, catalytic domain)	GO:0003676 (nucleic acid binding), GO:0003684 (damaged DNA binding), GO:0003906 (DNA-(apurinic or apyrimidinic site) lyase activity), GO:0006284 (base-excision repair), GO:0006289 (nucleotide-excision repair), GO:0008270 (zinc ion binding), GO:0016799 (hydrolase activity, hydrolyzing N-glycosyl compounds)
Niben101Scf08330g02002.1	sp|P13436|OLEO1_MAIZE	***-	Oleosin Zm-I	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf03157g00006.1	emb|CDY70616.1|	***-	BnaA03g54770D [Brassica napus]		
Niben101Scf04406g01004.1	AT1G53860.1	*-*-	Remorin family protein LENGTH=442		
Niben101Scf04570g04005.1	sp|Q7WTR3|MDTK_ERWAM	*-*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01243g03002.1	emb|CDY42991.1|	***-	BnaC02g19650D [Brassica napus]		
Niben101Scf07773g00012.1	sp|Q9FPS7|UBP20_ARATH	*-**	Ubiquitin carboxyl-terminal hydrolase 20	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf01655g03013.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf09153g05023.1	sp|Q0G9R2|NU4C_DAUCA	*-*-	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic		
Niben101Scf01262g00006.1	sp|Q3KP44|ANR55_HUMAN	--*-	Ankyrin repeat domain-containing protein 55	IPR020683 (Ankyrin repeat-containing domain), IPR021094 (NPR1/NIM1-like, C-terminal)	GO:0005515 (protein binding)
Niben101Scf11366g00001.1	sp|Q8LC53|EPF2_ARATH	***-	Protein EPIDERMAL PATTERNING FACTOR 2		
Niben101Scf05955g03054.1	sp|Q93KF4|PARC_STAAN	--*-	DNA topoisomerase 4 subunit A		
Niben101Scf09433g01019.1	AT4G01750.1	***-	rhamnogalacturonan xylosyltransferase 2 LENGTH=367	IPR003388 (Reticulon), IPR005069 (Nucleotide-diphospho-sugar transferase), IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf00271g03007.1	sp|Q9SLK6|ALA6_ARATH	****	Phospholipid-transporting ATPase 6	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf01133g01003.1	sp|P73307|RS8_SYNY3	*-*-	30S ribosomal protein S8	IPR000630 (Ribosomal protein S8)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04109g10012.1	sp|Q9LJQ5|RTNLI_ARATH	***-	Reticulon-like protein B9	IPR003388 (Reticulon)	
Niben101Scf08893g00004.1			Unknown protein		
Niben101Scf00069g15006.1			Unknown protein		
Niben101Scf00581g03001.1	ref|WP_017312960.1|	***-	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 [Fischerella sp. PCC 9339]	IPR008979 (Galactose-binding domain-like), IPR013857 (NADH:ubiquinone oxidoreductase intermediate-associated protein 30), IPR016040 (NAD(P)-binding domain)	
Niben101Scf03461g03002.1	AT3G45670.1	****	Protein kinase superfamily protein LENGTH=379	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00444g01008.1	sp|P07829|ACT3_DICDI	***-	Actin-3	IPR004000 (Actin family)	
Niben101Scf00854g11092.1	gb|AGZ90705.1|	***-	maturase, partial (mitochondrion) [Forsskaolea angustifolia]	IPR000477 (Reverse transcriptase domain)	
Niben101Scf00306g00003.1	sp|Q0WPS2|B561M_ARATH	***-	Cytochrome b561 domain-containing protein	IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf13186g01002.1	sp|O61125|STK4_DICDI	*-**	Serine/threonine-protein kinase 4 homolog A	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03455g07001.1	sp|Q0W1F9|RLME_UNCMA	****	Ribosomal RNA large subunit methyltransferase E	IPR015507 (Ribosomal RNA large subunit methyltransferase E), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0001510 (RNA methylation), GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf06444g02008.1	sp|A4QLS3|RPOC2_NASOF	*-**	DNA-directed RNA polymerase subunit beta''	IPR007081 (RNA polymerase Rpb1, domain 5)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf01958g01003.1	sp|A6RG85|NM111_AJECN	--*-	Pro-apoptotic serine protease NMA111		
Niben101Scf11408g01010.1	sp|Q6GN91|NT5D3_XENLA	***-	5'-nucleotidase domain-containing protein 3	IPR008380 (HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase), IPR023214 (HAD-like domain)	
Niben101Scf13762g01035.1	AT2G42850.1	*-*-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03885g06003.1	sp|Q43161|CAMT_STELP	****	Caffeoyl-CoA O-methyltransferase	IPR002935 (O-methyltransferase, family 3), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008171 (O-methyltransferase activity)
Niben101Scf00503g05008.1	sp|Q8LGE9|CSTR1_ARATH	*-*-	CMP-sialic acid transporter 1	IPR007271 (Nucleotide-sugar transporter)	GO:0000139 (Golgi membrane), GO:0005351 (sugar:proton symporter activity), GO:0008643 (carbohydrate transport), GO:0016021 (integral component of membrane)
Niben101Scf01188g10005.1	sp|P40228|CSK2B_ARATH	****	Casein kinase II subunit beta	IPR000704 (Casein kinase II, regulatory subunit)	GO:0005956 (protein kinase CK2 complex), GO:0019887 (protein kinase regulator activity)
Niben101Scf02581g05002.1	sp|P0ABI1|CLPA_ECO57	****	ATP-dependent Clp protease ATP-binding subunit ClpA	IPR001270 (ClpA/B family), IPR004176 (Clp, N-terminal), IPR019489 (Clp ATPase, C-terminal), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028299 (ClpA/B, conserved site 2)	GO:0005524 (ATP binding), GO:0019538 (protein metabolic process)
Niben101Scf09343g01009.1	AT3G20680.1	*-*-	Domain of unknown function (DUF1995) LENGTH=338	IPR018962 (Domain of unknown function DUF1995)	
Niben101Scf00520g12006.1	AT5G55090.1	****	mitogen-activated protein kinase kinase kinase 15 LENGTH=448	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05306g03014.1			Unknown protein		
Niben101Scf09708g06002.1	AT1G30820.1	****	CTP synthase family protein LENGTH=600	IPR004468 (CTP synthase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003883 (CTP synthase activity), GO:0006221 (pyrimidine nucleotide biosynthetic process)
Niben101Scf02583g02008.1	AT2G37730.1	***-	Protein of unknown function (DUF604) LENGTH=532	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf00821g16002.1	emb|CDX90086.1|	***-	BnaA08g18980D [Brassica napus]		
Niben101Scf10366g00012.1	sp|P46824|KLC_DROME	*-*-	Kinesin light chain	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06347g04030.1	ref|XP_007013444.1|	***-	DnaJ/Hsp40 cysteine-rich domain superfamily protein isoform 2 [Theobroma cacao] gb|EOY31063.1| DnaJ/Hsp40 cysteine-rich domain superfamily protein isoform 2 [Theobroma cacao]		
Niben101Scf07241g01008.1	AT2G21480.1	*-*-	Malectin/receptor-like protein kinase family protein LENGTH=871	IPR024788 (Malectin-like carbohydrate-binding domain)	
Niben101Scf03345g00010.1	sp|Q8VYI9|NLTL5_ARATH	--*-	Non-specific lipid-transfer protein-like protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02133g00005.1	sp|C6DGH6|BIOH_PECCP	*-*-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01951g01008.1	sp|Q39065|COPT1_ARATH	****	Copper transporter 1	IPR007274 (Ctr copper transporter)	GO:0005375 (copper ion transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0035434 (copper ion transmembrane transport)
Niben101Scf02539g00001.1			Unknown protein		
Niben101Scf01372g00005.1	ref|XP_002514181.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF48135.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01991g00009.1	AT4G13070.1	*-**	RNA-binding CRS1 / YhbY (CRM) domain protein LENGTH=343	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf03048g01039.1	gb|AAC83165.1|	*-*-	disease resistance protein RPP8 [Arabidopsis thaliana]		
Niben101Scf01330g01003.1	sp|Q9FLJ2|NC100_ARATH	*-*-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00860g03017.1	gb|KEH35501.1|	***-	COP1-interacting-like protein, putative [Medicago truncatula]		
Niben101Scf04157g04006.1	sp|Q7NZU6|MSBA_CHRVO	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf09716g02002.1	sp|O24160|TGA21_TOBAC	****	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf14989g00023.1	gb|AES73051.2|	***-	mediator of RNA polymerase II transcription subunit 30, putative [Medicago truncatula]		
Niben101Scf00037g02016.1	sp|Q700W2|SPL9_ARATH	****	Squamosa promoter-binding-like protein 9	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf05554g03006.1	emb|CDY41498.1|	***-	BnaA08g21000D [Brassica napus]	IPR008511 (Protein BYPASS-related)	
Niben101Scf05950g01001.1	sp|A8MQA2|NLTPD_ARATH	--*-	Non-specific lipid-transfer protein 13	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf07382g01005.1	emb|CDY20150.1|	***-	BnaA01g28520D [Brassica napus]		
Niben101Scf04563g03002.1	AT1G14570.2	*-*-	UBX domain-containing protein LENGTH=468	IPR001012 (UBX domain)	GO:0005515 (protein binding)
Niben101Scf08472g00001.1	emb|CDX81297.1|	***-	BnaC09g07080D [Brassica napus]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01438g03007.1	AT2G18840.1	***-	Integral membrane Yip1 family protein LENGTH=281		
Niben101Scf07663g00007.1	ref|XP_002510814.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF51416.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04763g01015.1	AT3G29185.2	***-	Domain of unknown function (DUF3598) LENGTH=411	IPR011038 (Calycin-like), IPR022017 (Domain of unknown function DUF3598)	
Niben101Scf11245g03003.1	sp|Q9FII7|SMC6B_ARATH	***-	Structural maintenance of chromosomes protein 6B	IPR010935 (SMCs flexible hinge), IPR027132 (Structural maintenance of chromosomes protein 6), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000724 (double-strand break repair via homologous recombination), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0006281 (DNA repair), GO:0030915 (Smc5-Smc6 complex), GO:0051276 (chromosome organization)
Niben101Scf01422g01032.1	gb|KEH20772.1|	***-	lysine ketoglutarate reductase trans-splicing protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf04752g00010.1	gb|ABN08700.1|	*-*-	Endonuclease/exonuclease/phosphatase [Medicago truncatula]		
Niben101Scf01820g00001.1	ref|XP_007022080.1|	*-*-	LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao] gb|EOY13605.1| LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]		
Niben101Ctg06026g00002.1	sp|O22212|PRP4L_ARATH	*-*-	U4/U6 small nuclear ribonucleoprotein PRP4-like protein		
Niben101Scf06933g02007.1	AT3G22200.2	*-**	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein LENGTH=513	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf08149g00013.1	emb|CDY49928.1|	*-*-	BnaCnng18380D [Brassica napus]		
Niben101Scf01728g01004.1	AT3G12830.1	***-	SAUR-like auxin-responsive protein family LENGTH=132	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf13005g03001.1	sp|Q7NBW0|DNAJ_MYCGA	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf00661g01003.1	sp|A3LQ01|DED1_PICST	*-**	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01848g00008.1	ref|WP_022170968.1|	--*-	phosphoglucosamine mutase [Blautia sp. CAG:52] emb|CDB20640.1| phosphoglucosamine mutase [Blautia sp. CAG:52]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf11167g00002.1	sp|Q8BL97|SRSF7_MOUSE	*-*-	Serine/arginine-rich splicing factor 7	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06999g01007.1	AT5G22920.1	****	CHY-type/CTCHY-type/RING-type Zinc finger protein LENGTH=291	IPR004039 (Rubredoxin-type fold), IPR008913 (Zinc finger, CHY-type), IPR017921 (Zinc finger, CTCHY-type)	GO:0008270 (zinc ion binding)
Niben101Scf08597g01022.1	sp|Q9FJB5|RP8L3_ARATH	--*-	Disease resistance RPP8-like protein 3		
Niben101Scf00955g05010.1	sp|Q9ZPS7|TMN3_ARATH	***-	Transmembrane 9 superfamily member 3	IPR004240 (Nonaspanin (TM9SF)), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane)
Niben101Scf00611g02015.1	AT1G17580.1	****	myosin 1 LENGTH=1520	IPR000048 (IQ motif, EF-hand binding site), IPR002710 (Dilute), IPR004009 (Myosin, N-terminal, SH3-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf03075g00002.1	AT3G07030.1	*-**	Alba DNA/RNA-binding protein LENGTH=405	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Scf03983g00022.1	sp|Q1RJT3|ODP2_RICBR	****	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	IPR006257 (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0004742 (dihydrolipoyllysine-residue acetyltransferase activity), GO:0006090 (pyruvate metabolic process), GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups), GO:0045254 (pyruvate dehydrogenase complex)
Niben101Scf03203g07018.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf00072g05003.1	sp|O48957|C99A1_SORBI	***-	Cytochrome P450 CYP99A1	IPR001128 (Cytochrome P450)	
Niben101Scf03619g00005.1	AT1G61590.1	****	Protein kinase superfamily protein LENGTH=424	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04841g00001.1	sp|Q08306|PPOD_SOLLC	*-**	Polyphenol oxidase D, chloroplastic	IPR022739 (Polyphenol oxidase, central domain), IPR022740 (Polyphenol oxidase, C-terminal)	GO:0004097 (catechol oxidase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01249g06002.1	sp|Q9XEG7|RS3A_TORRU	***-	40S ribosomal protein S3a	IPR001593 (Ribosomal protein S3Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06376g05030.1	AT3G44970.1	***-	Cytochrome P450 superfamily protein LENGTH=479	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04011g01012.1	sp|Q3EDF8|PPR28_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07089g02005.1	sp|Q9ZSK5|ZOG_PHALU	*-*-	Zeatin O-glucosyltransferase		
Niben101Scf04551g03003.1	AT4G22360.1	*-*-	SWIB complex BAF60b domain-containing protein LENGTH=385	IPR003121 (SWIB/MDM2 domain)	GO:0005515 (protein binding)
Niben101Scf03427g10008.1	sp|Q8LHP0|ELOF1_ORYSJ	***-	Transcription elongation factor 1 homolog	IPR007808 (Transcription elongation factor 1)	
Niben101Scf00467g00011.1	sp|Q9SR19|RAF2_ARATH	***-	Rubisco accumulation factor 2, chloroplastic		
Niben101Scf03029g02007.1	sp|Q54FK1|HDDC2_DICDI	***-	HD domain-containing protein 2 homolog	IPR003607 (HD/PDEase domain)	
Niben101Scf03367g01004.1	sp|Q9LUE2|TPS18_ARATH	****	Terpenoid synthase 18	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf10277g01006.1	sp|Q9LRP1|NPS13_ARATH	***-	Novel plant SNARE 13	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf12395g02002.1	sp|Q9FKP1|CCX1_ARATH	***-	Cation/calcium exchanger 1	IPR004837 (Sodium/calcium exchanger membrane region)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01936g07002.1	AT5G10240.1	****	asparagine synthetase 3 LENGTH=578	IPR006426 (Asparagine synthase, glutamine-hydrolyzing), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004066 (asparagine synthase (glutamine-hydrolyzing) activity), GO:0006529 (asparagine biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf06467g03016.1	AT1G27750.1	*-**	nucleic acid binding LENGTH=1075	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR012921 (Spen paralogue and orthologue SPOC, C-terminal), IPR016194 (SPOC like C-terminal domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf10132g01023.1	sp|Q80XC2|TRM61_MOUSE	****	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A	IPR014816 (tRNA (1-methyladenosine) methyltransferase catalytic subunit Gcd14), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0016429 (tRNA (adenine-N1-)-methyltransferase activity), GO:0030488 (tRNA methylation), GO:0031515 (tRNA (m1A) methyltransferase complex)
Niben101Scf00068g00017.1	sp|Q6VAK4|HP1_ORYSJ	-**-	Histidine-containing phosphotransfer protein 1		
Niben101Scf00955g01003.1	sp|D3ZRW8|EKI2_RAT	--*-	Ethanolamine kinase 2		
Niben101Scf06382g01004.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf02408g03019.1	ref|WP_003492319.1|	***-	peptidase M16 [Cl [Clostridium sporogenes PA 3679]	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like), IPR013578 (Peptidase M16C associated)	GO:0003824 (catalytic activity), GO:0006508 (proteolysis), GO:0046872 (metal ion binding)
Niben101Scf08522g02016.1	AT4G16340.1	*-**	guanyl-nucleotide exchange factors;GTPase binding;GTP binding LENGTH=1830	IPR026791 (Dedicator of cytokinesis), IPR027007 (DHR-1 domain)	GO:0005085 (guanyl-nucleotide exchange factor activity), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf04716g00009.1	ref|XP_003599009.1|	*-*-	TCP family transcription factor containing protein [Medicago truncatula]		
Niben101Scf01716g00015.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf06990g00021.1	sp|Q9LQQ4|H2B1_ARATH	*-*-	Histone H2B.1	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf07539g00001.1	sp|O04161|AMT12_SOLLC	****	Ammonium transporter 1 member 2	IPR001905 (Ammonium transporter), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf04113g03011.1	AT4G36520.1	*-*-	Chaperone DnaJ-domain superfamily protein LENGTH=1422	IPR001623 (DnaJ domain)	
Niben101Scf04558g00011.1	sp|B8AX23|TAF1B_ORYSI	*-*-	TATA box-binding protein-associated factor RNA polymerase I subunit B		
Niben101Scf01208g02003.1	AT4G20100.1	***-	PQ-loop repeat family protein / transmembrane family protein LENGTH=288	IPR006603 (PQ-loop repeat)	
Niben101Scf03346g00001.1	sp|Q8S8U9|RK32_ATRBE	-***	50S ribosomal protein L32, chloroplastic	IPR002677 (Ribosomal protein L32p)	GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf00251g00006.1	gb|KEH42787.1|	*-*-	ion channel pollux-like protein [Medicago truncatula]	IPR010420 (CASTOR/POLLUX/SYM8 ion channels)	
Niben101Scf02346g06007.1	sp|Q9WZF9|CLPP_THEMA	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04741g05017.1	sp|Q8S948|SPS1_ARATH	*-*-	Solanesyl diphosphate synthase 1	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process), GO:0015979 (photosynthesis), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf04887g00006.1	sp|Q13303|KCAB2_HUMAN	***-	Voltage-gated potassium channel subunit beta-2	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf03321g04018.1	sp|Q2NFX3|RL6_METST	***-	50S ribosomal protein L6	IPR000702 (Ribosomal protein L6)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf07677g00010.1	sp|C1EPQ9|SYI_BACC3	****	Isoleucine--tRNA ligase	IPR002301 (Isoleucine-tRNA ligase), IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)	GO:0000166 (nucleotide binding), GO:0002161 (aminoacyl-tRNA editing activity), GO:0003824 (catalytic activity), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004822 (isoleucine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006428 (isoleucyl-tRNA aminoacylation)
Niben101Scf06388g01021.1	sp|B5VM59|UTP11_YEAS6	****	U3 small nucleolar RNA-associated protein 11	IPR007144 (Small-subunit processome, Utp11)	GO:0006364 (rRNA processing), GO:0032040 (small-subunit processome)
Niben101Scf01987g01006.1	AT5G23070.1	****	Thymidine kinase LENGTH=282	IPR001267 (Thymidine kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004797 (thymidine kinase activity), GO:0005524 (ATP binding)
Niben101Scf04675g05012.1	sp|P49043|VPE_CITSI	***-	Vacuolar-processing enzyme	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02709g03012.1	ref|XP_002516848.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF45462.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf18668g00002.1	gb|AEB40019.1|	*-**	cytochrome c biogenesis factor N [Funaria hygrometrica]	IPR003569 (Cytochrome c-type biogenesis protein CcbS)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf04292g03014.1	sp|Q39096|ERD15_ARATH	*-*-	Protein EARLY RESPONSIVE TO DEHYDRATION 15		
Niben101Scf06176g02020.1	emb|CDX88419.1|	***-	BnaC06g38630D [Brassica napus]		
Niben101Scf00470g02009.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf02694g02005.1	sp|Q9LQ27|TPS22_ARATH	****	Terpenoid synthase 22	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf01477g01009.1	sp|Q6EP49|MAD27_ORYSJ	****	MADS-box transcription factor 27	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf09725g00021.1			Unknown protein		
Niben101Scf02929g00070.1	gb|ACZ52183.1|	*-*-	ribosomal protein L10 (mitochondrion) [Digitalis purpurea]		
Niben101Scf03573g00020.1	sp|Q8L868|E1311_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 11	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf12560g00018.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07042g01015.1	AT5G11900.1	****	Translation initiation factor SUI1 family protein LENGTH=198	IPR005873 (Density-regulated protein DRP1)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf04418g02003.1	emb|CDX98312.1|	--*-	BnaC06g16730D [Brassica napus]		
Niben101Scf03092g00007.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07608g00007.1	sp|Q9NP86|CABP5_HUMAN	****	Calcium-binding protein 5	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01958g06004.1	sp|Q8R0T2|ZN768_MOUSE	--*-	Zinc finger protein 768	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf12017g05002.1	AT4G16340.1	*-**	guanyl-nucleotide exchange factors;GTPase binding;GTP binding LENGTH=1830	IPR026791 (Dedicator of cytokinesis), IPR027007 (DHR-1 domain)	GO:0005085 (guanyl-nucleotide exchange factor activity), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf00448g10015.1	sp|Q9LRR2|TPS17_ARATH	*-**	Terpenoid synthase 17	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf21689g00005.1	AT4G38860.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=105		
Niben101Scf04560g03026.1	sp|Q8GW72|FUCO1_ARATH	****	Alpha-L-fucosidase 1	IPR000933 (Glycoside hydrolase, family 29), IPR008979 (Galactose-binding domain-like), IPR017853 (Glycoside hydrolase superfamily)	GO:0004560 (alpha-L-fucosidase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf11670g01002.1	sp|Q8LCA1|CUT1B_ARATH	***-	Protein CURVATURE THYLAKOID 1B, chloroplastic	IPR025564 (Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain)	
Niben101Scf05844g00001.1	AT1G58100.1	***-	TCP family transcription factor LENGTH=401	IPR005333 (Transcription factor, TCP)	
Niben101Scf10309g00002.1	AT2G46760.1	****	D-arabinono-1,4-lactone oxidase family protein LENGTH=603	IPR007173 (D-arabinono-1,4-lactone oxidase), IPR010030 (Plant-specific FAD-dependent oxidoreductase)	GO:0003885 (D-arabinono-1,4-lactone oxidase activity), GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf10222g00001.1	AT4G23490.1	***-	Protein of unknown function (DUF604) LENGTH=526	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf03854g03009.1	sp|Q9FJQ5|EIL5_ARATH	--*-	ETHYLENE INSENSITIVE 3-like 5 protein		
Niben101Scf02517g12021.1	sp|Q9CQK7|RWDD1_MOUSE	--*-	RWD domain-containing protein 1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf09577g01001.1	ref|XP_003618320.1|	*-*-	Phytoalexin-deficient 4-2 protein [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf09812g01020.1			Unknown protein		
Niben101Scf13399g00011.1	sp|A0JNJ4|ZN692_BOVIN	--*-	Zinc finger protein 692	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf05605g00047.1	ref|XP_003588306.1|	*-*-	Ribosomal protein S3 [Medicago truncatula]		
Niben101Scf05002g03030.1	sp|Q6LXE7|RS3_METMP	****	30S ribosomal protein S3	IPR005703 (Ribosomal protein S3, eukaryotic/archaeal), IPR015946 (K homology domain-like, alpha/beta)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf01289g09011.1	sp|Q9SXD8|PPR90_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01015g01002.1	sp|Q02243|WIN_SOYBN	***-	Wound-induced protein	IPR001002 (Chitin-binding, type 1), IPR009009 (RlpA-like double-psi beta-barrel domain)	GO:0008061 (chitin binding), GO:0042742 (defense response to bacterium), GO:0050832 (defense response to fungus)
Niben101Scf00372g02010.1	AT1G77540.1	***-	Acyl-CoA N-acyltransferases (NAT) superfamily protein LENGTH=114	IPR016181 (Acyl-CoA N-acyltransferase)	
Niben101Scf01237g13021.1	ref|NP_001233978.1|	*-*-	extensin-like protein Dif54 precursor [Solanum lycopersicum] emb|CAA67814.1| extensin-like protein Dif54 [Solanum lycopersicum]		
Niben101Scf05173g08003.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00309g00004.1	sp|Q11080|TMBI4_CAEEL	--*-	Transmembrane BAX inhibitor motif-containing protein 4	IPR006214 (Bax inhibitor 1-related)	
Niben101Scf07160g00008.1	AT4G38840.1	***-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf06829g03030.1	gb|KEH17105.1|	--*-	F-box protein interaction domain protein [Medicago truncatula]		
Niben101Scf02266g02008.1			Unknown protein		
Niben101Scf02044g06015.1			Unknown protein		
Niben101Scf04391g00004.1	AT5G02590.1	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=326		
Niben101Scf21242g00003.1	sp|Q94KB7|MLO6_ARATH	***-	MLO-like protein 6	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf24084g00001.1	sp|A1L4V7|DCYD2_ARATH	*-*-	D-cysteine desulfhydrase 2, mitochondrial		
Niben101Scf14323g00001.1			Unknown protein		
Niben101Scf34305g00012.1	ref|XP_002532338.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF30040.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00466g04017.1	sp|Q8LGG8|USPAL_ARATH	****	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf01243g02011.1	ref|WP_008308917.1|	*-*-	Protein of unknown function (DUF3007) [Leptolyngbya sp. PCC 6406]	IPR021562 (Protein of unknown function DUF3007)	
Niben101Scf00812g03001.1	sp|Q94AI4|METL1_ARATH	****	Methyltransferase-like protein 1	IPR002052 (DNA methylase, N-6 adenine-specific, conserved site), IPR007757 (MT-A70-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf02852g01005.1	AT4G32290.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=384	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf09470g00001.1	sp|Q7XJ98|KATAM_ARATH	***-	Xyloglucan galactosyltransferase KATAMARI1	IPR004263 (Exostosin-like)	
Niben101Ctg12150g00004.1	sp|Q54I48|CTL2_DICDI	*-*-	Choline transporter-like protein 2	IPR007603 (Choline transporter-like)	
Niben101Scf03634g03007.1			Unknown protein		
Niben101Scf01320g02005.1	AT1G65920.1	*-*-	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain LENGTH=1006	IPR013591 (Brevis radix (BRX) domain)	
Niben101Scf01310g05005.1	AT5G45470.1	*-*-	Protein of unknown function (DUF594) LENGTH=866	IPR025315 (Domain of unknown function DUF4220)	
Niben101Scf15903g00002.1			Unknown protein		
Niben101Scf01232g00009.1	sp|Q9C8H0|AB12C_ARATH	*-*-	ABC transporter C family member 12	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf08936g06001.1	AT5G41040.1	****	HXXXD-type acyl-transferase family protein LENGTH=457	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02043g00011.1	ref|XP_007029114.1|	*-*-	RNA binding,RNA binding isoform 3 [Theobroma cacao] gb|EOY09616.1| RNA binding,RNA binding isoform 3 [Theobroma cacao]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf00457g00002.1			Unknown protein		
Niben101Scf08134g02009.1	gb|ADY76580.1|	***-	translocon at inner membrane of chloroplasts 21 [Brassica napus]	IPR022051 (Protein of unknown function DUF3611)	
Niben101Scf09230g02005.1	gb|ADX62222.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia mexicana]		
Niben101Scf10228g01020.1	AT3G12620.1	****	Protein phosphatase 2C family protein LENGTH=385	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf05830g04014.1	sp|O82343|Y2626_ARATH	*-*-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf10737g01004.1	AT1G02816.1	***-	Protein of unknown function, DUF538 LENGTH=166	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf03550g00023.1	AT1G18030.1	***-	Protein phosphatase 2C family protein LENGTH=351	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf08127g10007.1	sp|Q566M8|RN150_DANRE	--*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00406g03002.1	AT5G57860.1	***-	Ubiquitin-like superfamily protein LENGTH=95	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf08758g01001.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf23517g00003.1	sp|O65238|Y5537_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain)	
Niben101Ctg16024g00001.1	AT1G79900.1	***-	Mitochondrial substrate carrier family protein LENGTH=296	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf05551g00020.1	sp|Q9SNC3|FLA4_ARATH	***-	Fasciclin-like arabinogalactan protein 4	IPR000782 (FAS1 domain)	
Niben101Scf05351g00004.1	sp|P13983.1|EXTN_TOBAC	*-*-	RecName: Full=Extensin; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precursor [Nicotiana tabacum] emb|CAA32090.1| unnamed protein product [Nicotiana tabacum]		
Niben101Scf07231g03009.1	gb|KEH33299.1|	*-*-	YGL010w-like protein [Medicago truncatula]	IPR009305 (Protein of unknown function DUF962)	
Niben101Scf01350g04007.1	AT4G34100.1	*-*-	RING/U-box superfamily protein LENGTH=1108		
Niben101Scf03739g02013.1	AT5G05240.1	***-	Uncharacterised conserved protein (UCP030365) LENGTH=530		
Niben101Scf08459g01020.1	sp|Q9LRR6|CID9_ARATH	****	Polyadenylate-binding protein-interacting protein 9	IPR009818 (Ataxin-2, C-terminal), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01318g01008.1	sp|P14953|TRPE_CLOTM	***-	Anthranilate synthase component 1	IPR005801 (ADC synthase), IPR019999 (Anthranilate synthase component I - like)	GO:0009058 (biosynthetic process), GO:0016833 (oxo-acid-lyase activity)
Niben101Scf08445g02037.1	gb|ABI34321.1|	--*-	RNase H family protein [Solanum demissum]		
Niben101Scf03954g02011.1	sp|Q0D2E8|RFT1_XENTR	***-	Protein RFT1 homolog	IPR007594 (RFT1)	GO:0005319 (lipid transporter activity), GO:0006869 (lipid transport), GO:0016021 (integral component of membrane)
Niben101Scf05469g02009.1	sp|P25792|CYSP_SCHMA	*-**	Cathepsin B-like cysteine proteinase	IPR000118 (Granulin), IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf02220g04001.1	sp|A4X4F2|COAD_SALTO	--*-	Phosphopantetheine adenylyltransferase		
Niben101Scf00576g00009.1	gb|AES73591.2|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00726g00013.1	AT5G13760.1	***-	Plasma-membrane choline transporter family protein LENGTH=569	IPR007603 (Choline transporter-like)	
Niben101Scf00509g01008.1	sp|Q8LEJ6|FLA11_ARATH	***-	Fasciclin-like arabinogalactan protein 11	IPR000782 (FAS1 domain)	
Niben101Scf08581g01005.1	sp|Q147X3|NAA30_HUMAN	--**	N-alpha-acetyltransferase 30	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf13063g00001.1	AT4G32350.1	*-*-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=732	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf00043g03010.1	sp|O24160|TGA21_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00863g04003.1			Unknown protein		
Niben101Scf11560g00013.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02594g06002.1	sp|O81148|PSA4A_ARATH	****	Proteasome subunit alpha type-4-A	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf02279g05005.1	AT1G14360.1	***-	UDP-galactose transporter 3 LENGTH=331	IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf03679g04006.1			Unknown protein		
Niben101Scf02549g03008.1	sp|Q402F3|TOM3_TOBAC	***-	Tobamovirus multiplication protein 3	IPR009457 (Domain of unknown function DUF1084)	
Niben101Scf02621g02018.1	sp|O48837|LRKS2_ARATH	--**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06436g02005.1	AT3G61270.1	***-	Arabidopsis thaliana protein of unknown function (DUF821) LENGTH=498	IPR006598 (Lipopolysaccharide-modifying protein)	
Niben101Scf14394g01037.1	sp|O64407|AMYB_VIGUN	****	Beta-amylase	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf09442g00003.1	sp|Q10S72|4CLL4_ORYSJ	*-*-	4-coumarate--CoA ligase-like 4	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03076g00018.1	sp|P46301|RS25_SOLLC	*-*-	40S ribosomal protein S25	IPR004977 (Ribosomal protein S25)	
Niben101Scf03908g01002.1	sp|Q0WRX3|SCP40_ARATH	****	Serine carboxypeptidase-like 40	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02105g00016.1	sp|Q6AYJ1|RECQ1_RAT	*-*-	ATP-dependent DNA helicase Q1	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf11232g00024.1	AT1G13220.2	*-*-	nuclear matrix constituent protein-related LENGTH=1128		
Niben101Scf20652g00003.1	sp|F4HQX1|JAL3_ARATH	***-	Jacalin-related lectin 3	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf03072g05007.1	sp|Q9SPL4|AMP22_MACIN	*-*-	Vicilin-like antimicrobial peptides 2-2	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf00315g00001.1	AT3G60480.1	***-	unknown protein; Has 17 Blast hits to 17 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=111		
Niben101Scf00555g00007.1	AT5G03380.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=392	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf06637g00017.1	sp|Q2MIC5|YCF2_SOLBU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf02240g02009.1	sp|P41129|RL132_BRANA	***-	60S ribosomal protein L13-2	IPR001380 (Ribosomal protein L13e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02581g02011.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]		
Niben101Scf02014g00008.1	sp|Q9DC48|PRP17_MOUSE	*-*-	Pre-mRNA-processing factor 17		
Niben101Scf00022g09023.1	AT5G21930.1	*-*-	P-type ATPase of Arabidopsis 2 LENGTH=883		
Niben101Scf06000g01006.1	sp|Q70Z16|NAP1D_TOBAC	*-**	Nucleosome assembly protein 1;4	IPR002164 (Nucleosome assembly protein (NAP))	GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf06153g02021.1	emb|CDY44499.1|	***-	BnaC01g10500D [Brassica napus]		
Niben101Scf05415g01002.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06753g00010.1	gb|ACN57274.1|	*-*-	At1g62520-like protein [Capsella grandiflora]	IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain)	GO:0003950 (NAD+ ADP-ribosyltransferase activity)
Niben101Scf00288g09012.1	sp|P0CD24|NU2C1_PANGI	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf06761g02002.1	dbj|BAD16379.1|	--*-	ATP synthase subunit-like protein [Oryza sativa Japonica Group]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf00801g02008.1	sp|P62312|LSM6_HUMAN	***-	U6 snRNA-associated Sm-like protein LSm6	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf06437g04022.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf09725g00022.1	sp|Q3SNK1|METE_NITWN	****	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	IPR006276 (Cobalamin-independent methionine synthase)	GO:0003871 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity), GO:0008270 (zinc ion binding), GO:0008652 (cellular amino acid biosynthetic process), GO:0009086 (methionine biosynthetic process)
Niben101Scf05767g08020.1	sp|Q54YZ9|DHKJ_DICDI	--**	Hybrid signal transduction histidine kinase J	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf23557g00010.1			Unknown protein		
Niben101Scf09107g02015.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf04664g03014.1	AT2G21340.1	***-	MATE efflux family protein LENGTH=559		
Niben101Scf01718g06025.1	sp|O04376|2A5B_ARATH	*-**	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf02635g04005.1	AT1G75335.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=96		
Niben101Scf11774g00003.1	sp|Q6UWW0|LCN15_HUMAN	--*-	Lipocalin-15	IPR011038 (Calycin-like)	
Niben101Scf02740g04001.1	sp|Q8GXM8|MATE7_ARATH	***-	MATE efflux family protein 7	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02334g01003.1	sp|O04609|WRK22_ARATH	****	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01304g06002.1	sp|P18632|PLY1_CRYJA	***-	Pectate lyase 1	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf00504g06016.1	ref|NP_001189564.1|	****	folic acid binding / transferase [Arabidopsis thaliana] gb|AEC07084.1| folic acid binding / transferase [Arabidopsis thaliana]	IPR022384 (Formiminotransferase subdomain)	GO:0005542 (folic acid binding), GO:0008152 (metabolic process), GO:0016740 (transferase activity)
Niben101Scf01998g07001.1	sp|A2T759|ZNF16_PANTR	*-*-	Zinc finger protein 16	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf13186g02004.1	sp|Q96N64|PWP2A_HUMAN	*-*-	PWWP domain-containing protein 2A	IPR000313 (PWWP domain)	
Niben101Scf06378g02001.1	sp|Q8S8E3|PYL6_ARATH	***-	Abscisic acid receptor PYL6	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf02927g04011.1	sp|O95433|AHSA1_HUMAN	****	Activator of 90 kDa heat shock protein ATPase homolog 1	IPR013538 (Activator of Hsp90 ATPase homologue 1-like), IPR015310 (Activator of Hsp90 ATPase, N-terminal), IPR023393 (START-like domain)	GO:0001671 (ATPase activator activity), GO:0006950 (response to stress), GO:0051087 (chaperone binding)
Niben101Scf04114g01006.1			Unknown protein		
Niben101Scf00087g06002.1	gb|KEH25033.1|	*-**	plant calmodulin-binding-like protein [Medicago truncatula]	IPR012417 (Calmodulin-binding domain, plant)	GO:0005516 (calmodulin binding)
Niben101Scf01249g04001.1	sp|Q9ULD8|KCNH3_HUMAN	*-**	Potassium voltage-gated channel subfamily H member 3	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR020683 (Ankyrin repeat-containing domain)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0005515 (protein binding), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00129g00001.1	sp|Q9SND4|HEC2_ARATH	***-	Transcription factor HEC2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf12228g00001.1	gb|AAC72876.1|	--*-	T9E19.2 gene product [Arabidopsis thaliana]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf07287g00006.1	sp|Q01440|GTR1_LEIDO	*-**	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01027g01002.1	AT2G46150.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=221	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf00819g03006.1	AT2G40410.2	*-*-	Staphylococcal nuclease homologue LENGTH=332		
Niben101Scf00369g20008.1	sp|Q6NPT8|PP2B1_ARATH	***-	F-box protein PP2-B1	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf07027g04002.1	sp|P48981|BGAL_MALDO	*-*-	Beta-galactosidase	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08522g02015.1	ref|XP_007046393.1|	--*-	Guanyl-nucleotide exchange factors,GTPase binding,GTP binding isoform 1 [Theobroma cacao] gb|EOY02225.1| Guanyl-nucleotide exchange factors,GTPase binding,GTP binding isoform 1 [Theobroma cacao]		
Niben101Scf04233g01020.1	sp|Q9LSW7|ACCH9_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 9	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf01681g10002.1	ref|XP_007049504.1|	--*-	Fanconi anemia group D2 protein, putative [Theobroma cacao] gb|EOX93661.1| Fanconi anemia group D2 protein, putative [Theobroma cacao]		
Niben101Scf13710g03002.1	sp|P48368|CRTE_CYAPA	***-	Geranylgeranyl diphosphate synthase	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf03882g06008.1	sp|Q9C552|PUM23_ARATH	*-*-	Pumilio homolog 23	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf03488g12001.1	sp|A2XDY1|MADS1_ORYSI	*-*-	MADS-box transcription factor 1	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf20973g00008.1	ref|XP_002535501.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26883.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03129g02014.1	sp|Q94B74|NUDT2_ARATH	*-**	Nudix hydrolase 2	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf04160g00014.1	sp|O88813|ACSL5_RAT	***-	Long-chain-fatty-acid--CoA ligase 5	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03427g01002.1	sp|A5PLN9|TPC13_HUMAN	***-	Trafficking protein particle complex subunit 13	IPR010378 (Protein of unknown function DUF974)	
Niben101Scf10189g02013.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf12033g00006.1	sp|Q2KI24|MTHSD_BOVIN	***-	Methenyltetrahydrofolate synthase domain-containing protein	IPR002698 (5-formyltetrahydrofolate cyclo-ligase), IPR024185 (5-formyltetrahydrofolate cyclo-ligase-like domain)	
Niben101Scf12672g00008.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05982g01005.1	sp|Q4V8C4|WDR5B_RAT	***-	WD repeat-containing protein 5B	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01051g01014.1	AT4G16745.2	*-*-	Exostosin family protein LENGTH=589	IPR004263 (Exostosin-like)	
Niben101Scf05231g00015.1	ref|XP_002518954.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF43487.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08322g01008.1			Unknown protein	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf09296g01011.1	sp|Q93ZH2|NFYA3_ARATH	*-**	Nuclear transcription factor Y subunit A-3	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07355g01003.1	sp|Q9ZP55|DRP4C_ARATH	***-	Dynamin-related protein 4C	IPR000375 (Dynamin central domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf00883g02011.1	emb|CDY18604.1|	*-*-	BnaA09g07910D [Brassica napus]	IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf00318g07004.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR006564 (Zinc finger, PMZ-type)	GO:0008270 (zinc ion binding)
Niben101Scf07305g00001.1	gb|ABA95488.2|	***-	expressed protein [Oryza sativa Japonica Group]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf06313g03001.1			Unknown protein		
Niben101Scf04444g06007.1	sp|Q9FM65|FLA1_ARATH	***-	Fasciclin-like arabinogalactan protein 1	IPR000782 (FAS1 domain)	
Niben101Scf08685g00022.1	AT4G17420.1	***-	Tryptophan RNA-binding attenuator protein-like LENGTH=285	IPR002838 (Mitochondrial biogenesis protein AIM24), IPR016031 (Tryptophan RNA-binding attenuator protein-like domain)	
Niben101Ctg12456g00002.1	sp|Q9XGS0|TRXM_BRANA	--*-	Thioredoxin M-type, chloroplastic		
Niben101Scf08653g07025.1	AT1G48570.1	****	zinc finger (Ran-binding) family protein LENGTH=455	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf00129g01001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf17834g00013.1	ref|WP_025955902.1|	*-*-	MULTISPECIES: hypothetical protein [Prochlorococcus]	IPR019616 (Uncharacterised protein family Ycf54)	
Niben101Scf01694g10005.1			Unknown protein		
Niben101Scf08160g05014.1	AT1G19430.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=724	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf06277g03004.1	sp|Q9FX85|PER10_ARATH	****	Peroxidase 10	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03203g07019.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf11715g03007.1	sp|Q9LYZ9|PP362_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03099g04004.1	sp|P81396|MYB40_ANTMA	*-*-	Myb-related protein 340	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01812g02026.1	sp|P04795|HSP15_SOYBN	*-*-	17.6 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf03973g01002.1	emb|CDY26956.1|	***-	BnaC09g36270D [Brassica napus]	IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf05453g00017.1	gb|KEH18933.1|	***-	BON1-associated-like protein [Medicago truncatula]	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01086g00011.1	gb|AAS91798.1|	*-*-	Ulp1-like peptidase [Cucumis melo] gb|AAU04774.1| Ulp1 peptidase-like [Cucumis melo]		
Niben101Scf06999g01006.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf01181g00024.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05111g00008.1	AT1G56200.1	*-*-	embryo defective 1303 LENGTH=154		
Niben101Scf00863g07016.1	sp|Q8GXX7|C3H33_ARATH	*-*-	Zinc finger CCCH domain-containing protein 33	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf05710g00013.1	sp|Q7Z6K3|PTAR1_HUMAN	*-**	Protein prenyltransferase alpha subunit repeat-containing protein 1	IPR002088 (Protein prenyltransferase, alpha subunit), IPR016094 (Ribosomal protein L1, 2-layer alpha/beta-sandwich), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding), GO:0008318 (protein prenyltransferase activity), GO:0018342 (protein prenylation)
Niben101Scf00158g04002.1	sp|Q9SD34|C3H44_ARATH	*-**	Zinc finger CCCH domain-containing protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf10167g00008.1	sp|Q14139|UBE4A_HUMAN	*-**	Ubiquitin conjugation factor E4 A	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR019474 (Ubiquitin conjugation factor E4, core)	GO:0000151 (ubiquitin ligase complex), GO:0004842 (ubiquitin-protein transferase activity), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0016567 (protein ubiquitination), GO:0034450 (ubiquitin-ubiquitin ligase activity)
Niben101Scf00542g03009.1	sp|Q9FGY4|FB341_ARATH	--*-	F-box protein	IPR017451 (F-box associated interaction domain)	
Niben101Scf22424g01005.1	sp|Q9LJ44|COL12_ARATH	--*-	Zinc finger protein CONSTANS-LIKE 12		
Niben101Scf05809g00011.1	AT4G10330.1	***-	glycine-rich protein LENGTH=130		
Niben101Scf00314g02004.1	sp|Q9SRT2|BH062_ARATH	***-	Transcription factor bHLH62	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04905g01007.1	ref|XP_007043089.1|	--*-	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao] gb|EOX98920.1| Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]		
Niben101Scf12732g00004.1	sp|Q94AQ9|SGRL_ARATH	***-	Protein STAY-GREEN LIKE, chloroplastic	IPR024438 (Staygreen protein)	
Niben101Scf00067g02002.1	AT3G53580.1	****	diaminopimelate epimerase family protein LENGTH=362	IPR001653 (Diaminopimelate epimerase, DapF)	GO:0005737 (cytoplasm), GO:0008837 (diaminopimelate epimerase activity), GO:0009089 (lysine biosynthetic process via diaminopimelate)
Niben101Scf03913g01042.1	sp|Q9KDE6|SYA_BACHD	****	Alanine--tRNA ligase	IPR002318 (Alanine-tRNA ligase, class IIc), IPR009000 (Translation protein, beta-barrel domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004813 (alanine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006419 (alanyl-tRNA aminoacylation), GO:0016876 (ligase activity, forming aminoacyl-tRNA and related compounds), GO:0043039 (tRNA aminoacylation)
Niben101Scf06966g02006.1	sp|Q9T039|EC14_ARATH	***-	Egg cell-secreted protein 1.4	IPR008502 (Prolamin-like domain)	
Niben101Scf00301g00001.1	AT3G57880.1	****	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein LENGTH=773	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf01509g02025.1			Unknown protein		
Niben101Scf05596g00025.1	sp|Q0T8H5|DNAJ_SHIF8	***-	Chaperone protein DnaJ	IPR012724 (Chaperone DnaJ)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0009408 (response to heat), GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf00972g00005.1	sp|Q3C1G9|RPOC2_NICSY	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf03208g00007.1	sp|Q9HFW3|TRF5_ASHGO	*-*-	Poly(A) RNA polymerase protein 1		
Niben101Scf00860g03018.1	AT5G51100.1	****	Fe superoxide dismutase 2 LENGTH=305	IPR001189 (Manganese/iron superoxide dismutase)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01158g03009.1			Unknown protein		
Niben101Scf06525g01007.1	gb|KFV11546.1|	***-	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit, partial [Pterocles gutturalis]	IPR011990 (Tetratricopeptide-like helical domain), IPR029489 (O-GlcNAc transferase, C-terminal)	GO:0005515 (protein binding)
Niben101Scf13002g03002.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf02635g06001.1	sp|Q9BV79|MECR_HUMAN	*-**	Trans-2-enoyl-CoA reductase, mitochondrial	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10431g00007.1	ref|XP_003599949.1|	--**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf07741g02005.1	sp|Q06450|ATP5E_IPOBA	****	ATP synthase subunit epsilon, mitochondrial	IPR006721 (ATPase, F1 complex, epsilon  subunit, mitochondrial)	GO:0000275 (mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)), GO:0015986 (ATP synthesis coupled proton transport), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf01991g00008.1	AT1G66900.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=272	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04375g01011.1	sp|A1WW06|HIS4_HALHL	--**	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase	IPR006062 (Histidine biosynthesis), IPR011858 (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic), IPR013785 (Aldolase-type TIM barrel)	GO:0000105 (histidine biosynthetic process), GO:0003824 (catalytic activity), GO:0003949 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity), GO:0008152 (metabolic process)
Niben101Scf13180g01003.1	sp|P48020|HMDH1_SOLTU	****	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	IPR002202 (Hydroxymethylglutaryl-CoA reductase, class I/II), IPR023074 (Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain)	GO:0004420 (hydroxymethylglutaryl-CoA reductase (NADPH) activity), GO:0015936 (coenzyme A metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01485g02011.1	ref|XP_007039626.1|	*-*-	Pleckstrin (PH) domain-containing protein isoform 3 [Theobroma cacao] gb|EOY24127.1| Pleckstrin (PH) domain-containing protein isoform 3 [Theobroma cacao]	IPR011993 (Pleckstrin homology-like domain), IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf05056g00002.1	sp|Q9KDV3|GALE_BACHD	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005886 (UDP-glucose 4-epimerase GalE), IPR025308 (UDP-glucose 4-epimerase C-terminal domain)	GO:0003824 (catalytic activity), GO:0003978 (UDP-glucose 4-epimerase activity), GO:0006012 (galactose metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf03143g11014.1	sp|Q9LIN2|GDL53_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02634g04008.1			Unknown protein		
Niben101Scf13995g01003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05174g02005.1	AT5G36130.1	***-	Cytochrome P450 superfamily protein LENGTH=140	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01616g07008.1	sp|B0TZT4|COQ7_FRAP2	--*-	2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	IPR007402 (Protein of unknown function DUF455), IPR009078 (Ferritin-like superfamily)	
Niben101Scf01962g00008.1	sp|Q556Y4|KC1_DICDI	****	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00528g01021.1	ref|WP_024927877.1|	--*-	collagen-binding protein [Bacillus thuringiensis]		
Niben101Scf07241g01009.1	sp|Q8RX88|FACE1_ARATH	****	CAAX prenyl protease 1 homolog	IPR001915 (Peptidase M48)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0008233 (peptidase activity), GO:0016020 (membrane), GO:0071586 (CAAX-box protein processing)
Niben101Scf00503g06003.1	sp|Q944H5|MTM1_ARATH	*-*-	Mitochondrial carrier protein MTM1	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf02114g01005.1	ref|XP_007045551.1|	*-*-	S-aden , putative [Theobroma cacao]	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf26564g00005.1	emb|CAB88530.1|	*-*-	disease resistance protein-like [Arabidopsis thaliana]	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00151g05009.1			Unknown protein		
Niben101Scf04993g05003.1			Unknown protein		
Niben101Scf00108g00004.1	sp|P48981|BGAL_MALDO	***-	Beta-galactosidase	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03817g00007.1	sp|Q9SIT7|PP151_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf02320g00018.1	sp|Q8VYR0|MCU5_ARATH	*-*-	Calcium uniporter protein 5, mitochondrial		
Niben101Scf01269g12007.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf16592g00012.1	AT3G26600.1	***-	armadillo repeat only 4 LENGTH=615	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf01453g06010.1	sp|Q96520|PER12_ARATH	****	Peroxidase 12	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00218g03012.1	sp|Q850K7|EXLB1_ORYSJ	***-	Expansin-like B1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region)
Niben101Scf04313g00002.1	sp|P25070|CML24_ARATH	****	Calcium-binding protein CML24	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03128g01004.1	AT1G75620.1	***-	glyoxal oxidase-related protein LENGTH=547	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR014756 (Immunoglobulin E-set), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf07822g00009.1	emb|CDY39086.1|	***-	BnaA01g29700D [Brassica napus]		
Niben101Scf02230g03027.1	sp|Q9LVN7|DPOD1_ARATH	****	DNA polymerase delta catalytic subunit	IPR006172 (DNA-directed DNA polymerase, family B), IPR023211 (DNA polymerase, palm domain), IPR025687 (C4-type zinc-finger of DNA polymerase delta)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity)
Niben101Scf10188g02011.1			Unknown protein		
Niben101Scf14591g01004.1	AT5G03870.1	***-	Glutaredoxin family protein LENGTH=384	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf05726g00003.1	AT1G25540.1	*-*-	phytochrome and flowering time regulatory protein (PFT1) LENGTH=836		
Niben101Scf00063g06001.1	sp|Q7XJ98|KATAM_ARATH	***-	Xyloglucan galactosyltransferase KATAMARI1	IPR004263 (Exostosin-like)	
Niben101Ctg06453g00003.1	ref|XP_007043372.1|	*-*-	SET domain protein 2 isoform 2 [Theobroma cacao] gb|EOX99203.1| SET domain protein 2 isoform 2 [Theobroma cacao]		
Niben101Scf06059g00002.1	sp|Q5VW32|BROX_HUMAN	*-*-	BRO1 domain-containing protein BROX	IPR004328 (BRO1 domain)	
Niben101Scf02990g05004.1	sp|Q8LDW9|XTH9_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 9	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf00372g04014.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02090g00001.1	sp|Q84J37|LAC15_ARATH	***-	Laccase-15	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10547g01001.1	sp|P17631|DNAJ_BACSU	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf01173g00005.1	sp|Q9ZUU0|WRK44_ARATH	*-**	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03716g00019.1			Unknown protein		
Niben101Scf32747g00004.1	ref|NP_001234800.1|	***-	ethylene-responsive nuclear protein [Solanum lycopersicum] gb|ABB13294.1| ethylene-responsive nuclear protein [Solanum lycopersicum]		
Niben101Scf14299g00020.1	gb|KGP01336.1|	***-	thymidylate synthase [Alcaligenes faecalis]	IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR023582 (Impact family)	
Niben101Scf00465g01006.1	sp|P21335|TADA_BACSU	*-**	tRNA-specific adenosine deaminase	IPR016193 (Cytidine deaminase-like), IPR028883 (tRNA-specific adenosine deaminase)	GO:0002100 (tRNA wobble adenosine to inosine editing), GO:0003824 (catalytic activity), GO:0008251 (tRNA-specific adenosine deaminase activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity)
Niben101Scf08606g00018.1	ref|NP_001051816.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf03600g04030.1	AT3G01750.1	***-	Ankyrin repeat family protein LENGTH=664	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf04384g05020.1	AT1G61050.1	***-	alpha 1,4-glycosyltransferase family protein LENGTH=435	IPR007577 (Glycosyltransferase, DXD sugar-binding motif), IPR007652 (Alpha 1,4-glycosyltransferase domain), IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf00440g01001.1	sp|O66119|ODP2_ZYMMO	*-*-	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	IPR001078 (2-oxoacid dehydrogenase acyltransferase, catalytic domain), IPR004167 (E3-binding domain), IPR011053 (Single hybrid motif), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf24238g00004.1	sp|Q9SE94|MTHR1_MAIZE	*-**	Methylenetetrahydrofolate reductase 1	IPR003171 (Methylenetetrahydrofolate reductase), IPR029041 (FAD-linked oxidoreductase-like)	GO:0004489 (methylenetetrahydrofolate reductase (NAD(P)H) activity), GO:0006555 (methionine metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf00916g01018.1			Unknown protein		
Niben101Scf12797g00017.1	sp|Q9XEE6|C3H29_ARATH	*-*-	Zinc finger CCCH domain-containing protein 29		
Niben101Scf02074g02018.1			Unknown protein		
Niben101Scf01569g01009.1			Unknown protein		
Niben101Scf01155g03005.1	sp|Q40161|GP1_SOLLC	***-	Polygalacturonase-1 non-catalytic subunit beta	IPR004873 (BURP domain)	
Niben101Scf00398g06002.1	sp|Q9FII2|FK117_ARATH	***-	F-box/kelch-repeat protein	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf09509g00008.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf04096g07009.1	sp|Q6AWW5|Y5262_ARATH	*-*-	Ankyrin repeat-containing protein	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01402g02022.1	sp|O64740|SC13B_ARATH	***-	Protein transport protein SEC13 homolog B	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf03535g00001.1	AT5G03420.1	*-*-	5'-AMP-activated protein kinase-related LENGTH=598	IPR014756 (Immunoglobulin E-set)	
Niben101Scf00850g01027.1	sp|Q9D1D4|TMEDA_MOUSE	***-	Transmembrane emp24 domain-containing protein 10	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf01171g09004.1	gb|KEH34490.1|	*-**	salicylic acid carboxyl methyltransferase [Medicago truncatula]	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02902g01014.1	sp|A0AUR5|F188A_DANRE	***-	Protein FAM188A	IPR003903 (Ubiquitin interacting motif), IPR011992 (EF-hand domain pair), IPR025257 (Domain of unknown function DUF4205)	
Niben101Scf38634g00002.1	sp|Q6MDE0|DAPAT_PARUW	*-**	LL-diaminopimelate aminotransferase	IPR019942 (LL-diaminopimelate aminotransferase, plants and Chlamydia type)	GO:0009089 (lysine biosynthetic process via diaminopimelate), GO:0010285 (L,L-diaminopimelate aminotransferase activity)
Niben101Scf02085g11001.1	sp|O80437|GPAT6_ARATH	***-	Glycerol-3-phosphate 2-O-acyltransferase 6	IPR002123 (Phospholipid/glycerol acyltransferase), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf04847g01002.1	sp|Q8BR07|BICD1_MOUSE	--*-	Protein bicaudal D homolog 1		
Niben101Scf02784g00008.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf04441g01003.1	sp|Q8VC66|ADIP_MOUSE	*-*-	Afadin- and alpha-actinin-binding protein	IPR021622 (Afadin/alpha-actinin-binding)	
Niben101Scf01068g05005.1	AT3G58630.1	*-*-	sequence-specific DNA binding transcription factors LENGTH=321		
Niben101Scf03686g01013.1	sp|P38935|SMBP2_HUMAN	*-*-	DNA-binding protein SMUBP-2		
Niben101Scf02688g06012.1	AT3G45140.1	*-*-	lipoxygenase 2 LENGTH=896	IPR000907 (Lipoxygenase)	GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01487g02010.1	sp|Q40066|SPZX_HORVU	*-*-	Serpin-ZX	IPR023796 (Serpin domain)	
Niben101Scf01791g03001.1	sp|Q29068|TCPG_PIG	*-*-	T-complex protein 1 subunit gamma	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf05605g00046.1	sp|Q8UE22|RS19_AGRT5	*-*-	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf11037g00022.1	gb|EMS51705.1|	***-	Universal stress protein A-like protein [Triticum urartu]	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	
Niben101Scf02530g01002.1	AT1G25270.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=355	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01281g05010.1	sp|Q9NUV9|GIMA4_HUMAN	--*-	GTPase IMAP family member 4	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00396g00004.1	sp|Q9LHJ8|SAP5_ARATH	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	IPR000058 (Zinc finger, AN1-type)	GO:0008270 (zinc ion binding)
Niben101Scf01396g04004.1	sp|P48502|QCR7_SOLTU	****	Cytochrome b-c1 complex subunit 7	IPR003197 (Cytochrome b-c1 complex subunit 7)	GO:0005750 (mitochondrial respiratory chain complex III), GO:0006122 (mitochondrial electron transport, ubiquinol to cytochrome c)
Niben101Scf05158g01018.1	AT3G18590.1	***-	early nodulin-like protein 5 LENGTH=188	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf05588g10008.1	sp|O24606|EIN3_ARATH	*-*-	Protein ETHYLENE INSENSITIVE 3		
Niben101Scf01782g11024.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY), IPR018872 (Zn-cluster domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00471g02020.1	gb|AES90030.2|	*-**	B3 DNA-binding domain protein [Medicago truncatula]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf06975g00008.1	AT3G51390.1	****	DHHC-type zinc finger family protein LENGTH=340	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf00870g08007.1	sp|P87173|LSM1_SCHPO	***-	U6 snRNA-associated Sm-like protein LSm1	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf11103g01012.1	emb|CDY23598.1|	***-	BnaC05g39960D [Brassica napus]		
Niben101Scf00854g02019.1	sp|P93311|RM02_ARATH	*-*-	60S ribosomal protein L2, mitochondrial		
Niben101Scf05396g07011.1			Unknown protein		
Niben101Scf00173g02003.1	sp|B4PZ52|NFU1_DROYA	*-*-	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial	IPR014824 (Scaffold protein Nfu/NifU, N-terminal)	
Niben101Scf03455g06016.1	ref|WP_026733342.1|	***-	epimerase [Fischerella sp. PCC 9605]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf02740g03006.1	sp|P48724|IF5_PHAVU	****	Eukaryotic translation initiation factor 5	IPR002735 (Translation initiation factor IF2/IF5), IPR016024 (Armadillo-type fold)	GO:0003743 (translation initiation factor activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0006413 (translational initiation)
Niben101Scf02929g02024.1	sp|P93311|RM02_ARATH	***-	60S ribosomal protein L2, mitochondrial		
Niben101Scf02714g06022.1	sp|F4ID16|NU98B_ARATH	*-**	Nuclear pore complex protein NUP98B	IPR007230 (Peptidase S59, nucleoporin)	GO:0005643 (nuclear pore), GO:0006810 (transport)
Niben101Scf07590g05005.1	sp|O48520|DPOD2_ARATH	*-*-	DNA polymerase delta small subunit	IPR024826 (DNA polymerase delta/II small subunit family)	
Niben101Scf07470g00005.1	AT2G39650.1	***-	Protein of unknown function (DUF506) LENGTH=291	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf02914g02041.1	sp|Q9SR44|LHTL2_ARATH	*-*-	Lysine histidine transporter-like 2	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf01413g04002.1	sp|Q9FPS3|UBP24_ARATH	*-*-	Ubiquitin carboxyl-terminal hydrolase 24	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00309g00005.1	tpg|DAA59749.1|	--*-	TPA: hypothetical protein ZEAMMB73_617181 [Zea mays]		
Niben101Scf09459g00001.1	ref|XP_007034400.1|	***-	Type 1 membrane protein, putative isoform 1 [Theobroma cacao] gb|EOY05326.1| Type 1 membrane protein, putative isoform 1 [Theobroma cacao]		
Niben101Scf02245g00008.1	AT5G37770.1	****	EF hand calcium-binding protein family LENGTH=161	IPR011992 (EF-hand domain pair), IPR028974 (TSP type-3 repeat)	GO:0005509 (calcium ion binding)
Niben101Scf03157g00007.1	ref|XP_002520470.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF41883.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04352g00009.1	sp|Q2JNP0|FTSH_SYNJB	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf11019g01012.1	AT5G04870.1	****	calcium dependent protein kinase 1 LENGTH=610	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06240g00006.1			Unknown protein		
Niben101Scf00579g00003.1	sp|Q7WKG2|AQPZ_BORBR	***-	Aquaporin Z	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf11366g00002.1	AT1G55210.1	*-*-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=187	IPR004265 (Plant disease resistance response protein)	
Niben101Scf05463g00002.1	sp|Q68CP9|ARID2_HUMAN	*-*-	AT-rich interactive domain-containing protein 2	IPR001606 (ARID DNA-binding domain)	GO:0003677 (DNA binding)
Niben101Scf11756g01002.1	sp|O13845|RSD1_SCHPO	--**	RNA-binding protein rsd1	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00378g01009.1	sp|Q8DF81|PUR4_VIBVU	****	Phosphoribosylformylglycinamidine synthase	IPR010073 (Phosphoribosylformylglycinamidine synthase), IPR016188 (PurM, N-terminal-like), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003824 (catalytic activity), GO:0004642 (phosphoribosylformylglycinamidine synthase activity), GO:0006189 ('de novo' IMP biosynthetic process)
Niben101Scf07089g02018.1	sp|Q66HC5|NUP93_RAT	*-**	Nuclear pore complex protein Nup93	IPR007231 (Nucleoporin interacting component Nup93/Nic96)	GO:0005643 (nuclear pore), GO:0006810 (transport)
Niben101Scf02854g00004.1	sp|Q0WPN8|CRR60_ARATH	***-	Cysteine-rich repeat secretory protein 60	IPR002902 (Gnk2-homologous domain)	
Niben101Scf03510g06007.1			Unknown protein		
Niben101Scf01082g01002.1	emb|CDY57001.1|	*-*-	BnaA04g27400D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf05688g09017.1	AT3G12800.1	****	short-chain dehydrogenase-reductase B LENGTH=298	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf00850g01028.1	AT4G31170.1	****	Protein kinase superfamily protein LENGTH=412	IPR011009 (Protein kinase-like domain), IPR016253 (Integrin-linked protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0009966 (regulation of signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09509g00007.1	gb|AAU90304.1|	--*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf03052g00015.1	sp|O70133|DHX9_MOUSE	*-*-	ATP-dependent RNA helicase A	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00955g05011.1	sp|B9SXY8|CSPLE_RICCO	--*-	CASP-like protein 4D1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf02240g05007.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00268g03001.1			Unknown protein		
Niben101Scf01133g01002.1	AT2G07739.1	*-*-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf03075g00001.1	AT3G24750.1	***-	unknown protein; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=169		
Niben101Scf02291g04002.1	sp|Q9SDQ3|SCL1_ARATH	***-	Scarecrow-like protein 1	IPR005202 (Transcription factor GRAS), IPR030011 (Scarecrow-like protein 1)	
Niben101Scf00854g11091.1	sp|P04966|PSAA_MAIZE	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf03515g00110.1	sp|Q9LK50|AB26G_ARATH	*-*-	ABC transporter G family member 26		
Niben101Scf04082g02023.1	emb|CDX74441.1|	***-	BnaA04g09480D [Brassica napus]	IPR007770 (Protein of unknown function DUF679)	
Niben101Scf03128g01002.1	sp|Q56XU4|C3H6_ARATH	***-	Zinc finger CCCH domain-containing protein 6	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf07089g02004.1	AT5G26310.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=481	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf15843g00004.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01274g05004.1			Unknown protein		
Niben101Scf07231g02010.1	sp|Q9LVP9|VTI13_ARATH	****	Vesicle transport v-SNARE 13	IPR007705 (Vesicle transport v-SNARE, N-terminal), IPR010989 (t-SNARE)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf05437g02003.1	AT3G17220.1	****	pectin methylesterase inhibitor 2 LENGTH=173	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf06186g06002.1	sp|Q9ZUH5|SDR2B_ARATH	*-**	Short-chain dehydrogenase/reductase 2b	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf03816g02017.1	sp|Q5JME8|DI195_ORYSJ	***-	Protein DEHYDRATION-INDUCED 19 homolog 5	IPR008598 (Drought induced 19 protein-like, zinc-binding domain), IPR027935 (Protein dehydration-induced 19, C-terminal)	
Niben101Scf05712g03003.1	AT3G11810.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=348		
Niben101Scf08679g00009.1	AT3G32940.1	*-**	RNA-binding KH domain-containing protein LENGTH=607	IPR004088 (K Homology domain, type 1)	GO:0003723 (RNA binding)
Niben101Scf01188g10006.1	gb|KEH24903.1|	***-	SecE/sec61-gamma subunit of protein translocation complex protein [Medicago truncatula]		
Niben101Scf10015g04004.1	AT2G39450.1	****	Cation efflux family protein LENGTH=394	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain), IPR027470 (Cation efflux protein cytoplasmic domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02658g00007.1	gb|KEH36390.1|	***-	heparan-alpha-glucosaminide N-acetyltransferase-like protein [Medicago truncatula]		
Niben101Scf05399g03003.1	AT5G13110.1	****	glucose-6-phosphate dehydrogenase 2 LENGTH=596	IPR001282 (Glucose-6-phosphate dehydrogenase)	GO:0004345 (glucose-6-phosphate dehydrogenase activity), GO:0006006 (glucose metabolic process), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03015g08006.1	gb|KEH26212.1|	--*-	tRNA methyltransferase complex GCD14 subunit [Medicago truncatula]		
Niben101Scf01291g04001.1	sp|O82352|RTNLE_ARATH	***-	Reticulon-like protein B5	IPR003388 (Reticulon)	
Niben101Scf03154g05011.1	sp|I1N462|SBT1_SOYBN	--*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01196g00003.1	sp|Q9LE73|NUDT4_ARATH	****	Nudix hydrolase 4	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf02227g01010.1	AT5G02820.1	****	Spo11/DNA topoisomerase VI, subunit A protein LENGTH=427	IPR002815 (Spo11/DNA topoisomerase VI subunit A)	GO:0000737 (DNA catabolic process, endonucleolytic), GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0006259 (DNA metabolic process), GO:0006265 (DNA topological change)
Niben101Scf00679g08007.1	AT3G21690.1	*-*-	MATE efflux family protein LENGTH=506	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf09087g00015.1	sp|Q6AYS7|ACY1A_RAT	*-*-	Aminoacylase-1A	IPR002933 (Peptidase M20)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01758g02005.1	sp|Q06GQ2|RBL_PIPCE	*-*-	Ribulose bisphosphate carboxylase large chain	IPR000685 (Ribulose bisphosphate carboxylase, large subunit, C-terminal)	GO:0000287 (magnesium ion binding)
Niben101Scf04021g02010.1	AT5G51830.1	****	pfkB-like carbohydrate kinase family protein LENGTH=343	IPR002139 (Ribokinase), IPR029056 (Ribokinase-like)	GO:0004747 (ribokinase activity), GO:0006014 (D-ribose metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf01812g02025.1	sp|A1KTL3|METE_NEIMF	****	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	IPR006276 (Cobalamin-independent methionine synthase)	GO:0003871 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity), GO:0008270 (zinc ion binding), GO:0008652 (cellular amino acid biosynthetic process), GO:0009086 (methionine biosynthetic process)
Niben101Scf02353g06034.1	AT1G73260.1	****	kunitz trypsin inhibitor 1 LENGTH=215	IPR002160 (Proteinase inhibitor I3, Kunitz legume)	GO:0004866 (endopeptidase inhibitor activity)
Niben101Scf00348g01032.1			Unknown protein		
Niben101Scf17976g00004.1	emb|CDY64865.1|	*-*-	BnaA01g36480D [Brassica napus]	IPR021149 (Oligosaccharyl transferase complex, subunit OST3/OST6)	
Niben101Scf06407g00014.1	sp|Q9FLS0|FB253_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02726g01008.1	sp|Q84YJ9|HAK26_ORYSJ	****	Potassium transporter 26	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf01784g00003.1	gb|AID21636.1|	--*-	At4g21420p-like protein [Arabidopsis lyrata]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf00446g02007.1	ref|XP_003630256.1|	***-	Chromatin assembly factor 1 subunit B [Medicago truncatula]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03340g05005.1	sp|O23470|GDL64_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00108g02008.1	sp|Q2NRL9|LPXA_SODGM	--*-	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase	IPR011004 (Trimeric LpxA-like)	
Niben101Scf02751g07013.1	sp|Q54M20|TTC4_DICDI	*-*-	Tetratricopeptide repeat protein 4 homolog	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08304g05029.1			Unknown protein		
Niben101Scf04113g03012.1	AT1G75330.1	****	ornithine carbamoyltransferase LENGTH=375	IPR006130 (Aspartate/ornithine carbamoyltransferase)	GO:0004585 (ornithine carbamoyltransferase activity), GO:0006520 (cellular amino acid metabolic process), GO:0006591 (ornithine metabolic process), GO:0016597 (amino acid binding), GO:0016743 (carboxyl- or carbamoyltransferase activity)
Niben101Scf01330g01002.1	gb|KEH39796.1|	***-	transmembrane protein, putative [Medicago truncatula]	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf12732g00002.1	gb|AAG52313.1|AC021666_2	--*-	Mutator-like transposase; 53847-56139 [Arabidopsis thaliana]		
Niben101Scf00747g10006.1			Unknown protein		
Niben101Scf04375g05007.1	gb|KGG12176.1|	***-	Inactivated Zn-dependent hydrolase of the beta-lactamase fold [Prochlorococcus sp. MIT 0601]	IPR001279 (Beta-lactamase-like)	
Niben101Scf03128g07025.1	sp|Q43872|PER64_ARATH	****	Peroxidase 64	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06509g05014.1	sp|Q1JQE0|SNW1_BOVIN	*-*-	SNW domain-containing protein 1	IPR017862 (SKI-interacting protein, SKIP)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf03877g00018.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR015915 (Kelch-type beta propeller), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf10055g09004.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04763g01014.1	sp|Q9ZUU0|WRK44_ARATH	****	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08672g04012.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf06933g02006.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf03716g01002.1	AT5G01130.1	***-	Protein of unknown function (DUF674) LENGTH=452	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf01269g12008.1	sp|P48368|CRTE_CYAPA	*-*-	Geranylgeranyl diphosphate synthase	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf02225g03004.1	sp|Q8W207|CSN2_ARATH	*-*-	COP9 signalosome complex subunit 2	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03422g02015.1	sp|Q9STF9|PP266_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf03284g06009.1			Unknown protein		
Niben101Scf02634g04007.1	AT3G11500.1	***-	Small nuclear ribonucleoprotein family protein LENGTH=79	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf06613g00002.1	sp|Q92743|HTRA1_HUMAN	*-**	Serine protease HTRA1	IPR001940 (Peptidase S1C), IPR009003 (Trypsin-like cysteine/serine peptidase domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0003824 (catalytic activity), GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf00063g06042.1	sp|P74061|RPE_SYNY3	****	Ribulose-phosphate 3-epimerase	IPR000056 (Ribulose-phosphate 3-epimerase-like), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0008152 (metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives)
Niben101Scf07383g04001.1	sp|Q9SXZ2|FT_ARATH	***-	Protein FLOWERING LOCUS T	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf01676g00023.1	gb|AIU48487.1|	*-*-	AT4G36440-like protein, partial [Theobroma cacao]		
Niben101Scf01859g03008.1	AT1G75160.1	*-*-	Protein of unknown function (DUF620) LENGTH=395	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf00072g05002.1			Unknown protein		
Niben101Scf12258g00020.1	AT4G30845.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=114		
Niben101Scf06976g07012.1	AT5G04460.1	*-*-	RING/U-box superfamily protein LENGTH=863		
Niben101Scf03203g07017.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]		
Niben101Scf00157g07004.1			Unknown protein		
Niben101Scf03908g02005.1	sp|Q6EU39|MADS6_ORYSJ	****	MADS-box transcription factor 6	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf02123g02003.1	sp|O77666|TRI26_PIG	*-*-	Tripartite motif-containing protein 26	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08597g01021.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf10120g02001.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf01166g08001.1	sp|Q8LLE5|FPP_SOLLC	***-	Filament-like plant protein	IPR008587 (Filament-like plant protein)	
Niben101Scf11412g00002.1	gb|AES62142.2|	--*-	GATA type zinc finger transcription factor family protein [Medicago truncatula]		
Niben101Scf00702g00050.1	ref|WP_008874539.1|	*-**	heme lyase, CcmF subunit [Mesorhizobium metallidurans] emb|CCV05591.1| heme lyase, CcmF subunit [Mesorhizobium metallidurans STM 2683]	IPR003567 (Cytochrome c-type biogenesis protein)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf12443g00008.1	sp|Q5XF11|FB248_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00467g00010.1	emb|CDY10658.1|	*-*-	BnaA05g17040D [Brassica napus]	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf04377g04001.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04675g09036.1	sp|Q5XIJ6|BABA1_RAT	****	BRISC and BRCA1-A complex member 1	IPR002035 (von Willebrand factor, type A), IPR026126 (BRISC and BRCA1-A complex member 1)	GO:0045739 (positive regulation of DNA repair), GO:0070531 (BRCA1-A complex), GO:0070552 (BRISC complex)
Niben101Scf00311g05002.1	ref|NP_001054536.1|	--*-	[Oryza sativa Japonica Group] dbj|BAF16450.1| [Oryza sativa Japonica Group]		
Niben101Scf02805g01005.1	sp|O59942|AAP2_NEUCR	*-**	Amino-acid permease 2	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0006865 (amino acid transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01017g05003.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf04886g01001.1	AT3G09430.1	***-	unknown protein; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=301		
Niben101Scf04404g01009.1	AT2G36770.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02517g12020.1	sp|Q9CQK7|RWDD1_MOUSE	--*-	RWD domain-containing protein 1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf11124g01017.1	sp|Q75AA5|NTF2_ASHGO	*-**	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Ctg15970g00006.1	sp|F4HW51|CHR20_ARATH	*-*-	Protein CHROMATIN REMODELING 20		
Niben101Scf03925g02013.1	AT2G33170.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf05002g03031.1	ref|XP_002529925.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF32479.1| conserved hypothetical protein [Ricinus communis]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf04563g03003.1	AT2G02050.1	****	NADH-ubiquinone oxidoreductase B18 subunit, putative LENGTH=103	IPR008698 (NADH:ubiquinone oxidoreductase, B18 subunit)	GO:0003954 (NADH dehydrogenase activity), GO:0005739 (mitochondrion), GO:0008137 (NADH dehydrogenase (ubiquinone) activity)
Niben101Scf11090g00005.1	sp|Q8DRQ7|RLMH_STRMU	****	Ribosomal RNA large subunit methyltransferase H	IPR003742 (SPOUT methyltransferase, predicted), IPR029028 (Alpha/beta knot methyltransferases)	GO:0005737 (cytoplasm), GO:0006364 (rRNA processing), GO:0008168 (methyltransferase activity)
Niben101Scf07382g01006.1	sp|Q3T0F2|TPPC2_BOVIN	***-	Trafficking protein particle complex subunit 2	IPR006722 (Sedlin)	GO:0005622 (intracellular), GO:0006810 (transport), GO:0006888 (ER to Golgi vesicle-mediated transport)
Niben101Scf00482g00004.1	AT2G39380.1	****	exocyst subunit exo70 family protein H2 LENGTH=637	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf20521g00005.1	ref|NP_001049319.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf01993g06003.1	AT1G10280.1	*-**	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=412	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf05173g08002.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10927g00020.1	sp|Q8HQQ4|MATK_PINRO	*-*-	Maturase K	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf04018g01005.1	gb|AES68513.2|	*-*-	bacterial trigger factor protein [Medicago truncatula]		
Niben101Scf00830g00012.1	ref|NP_973497.1|	*-**	folic acid binding / transferase [Arabidopsis thaliana] gb|AEC07082.1| folic acid binding / transferase [Arabidopsis thaliana]	IPR012886 (Formiminotransferase, N-terminal subdomain), IPR013802 (Formiminotransferase, C-terminal subdomain)	GO:0005542 (folic acid binding), GO:0008152 (metabolic process), GO:0016740 (transferase activity)
Niben101Scf09335g00007.1	sp|Q7XYY2|MED25_ARATH	*-*-	Mediator of RNA polymerase II transcription subunit 25	IPR021419 (Mediator complex, subunit Med25, von Willebrand factor type A)	
Niben101Scf04049g00006.1			Unknown protein		
Niben101Scf01158g02004.1	AT3G62900.1	*-**	CW-type Zinc Finger LENGTH=1465	IPR011124 (Zinc finger, CW-type)	GO:0008270 (zinc ion binding)
Niben101Scf02237g08001.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02239g06002.1	sp|B4RKY8|DAPE_NEIG2	*-*-	Succinyl-diaminopimelate desuccinylase	IPR002933 (Peptidase M20)	GO:0004046 (aminoacylase activity), GO:0005737 (cytoplasm), GO:0006520 (cellular amino acid metabolic process), GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf06388g01022.1	AT1G73990.1	****	signal peptide peptidase LENGTH=677	IPR002142 (Peptidase S49), IPR029045 (ClpP/crotonase-like domain)	GO:0006508 (proteolysis), GO:0008233 (peptidase activity)
Niben101Scf01964g00006.1	sp|Q7X923|SPT16_ORYSJ	***-	FACT complex subunit SPT16	IPR000994 (Peptidase M24, structural domain), IPR013719 (Domain of unknown function DUF1747), IPR013953 (FACT complex subunit Spt16p/Cdc68p), IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	
Niben101Scf14005g00009.1	sp|A0PVN7|G6PI_MYCUA	****	Glucose-6-phosphate isomerase	IPR001672 (Phosphoglucose isomerase (PGI)), IPR023096 (Phosphoglucose isomerase, C-terminal)	GO:0004347 (glucose-6-phosphate isomerase activity), GO:0006094 (gluconeogenesis), GO:0006096 (glycolytic process)
Niben101Scf00151g04004.1	AT5G25360.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=169	IPR025124 (Domain of unknown function DUF4050)	
Niben101Scf08149g03008.1	gb|ADX23324.1|	*-*-	DOG1, partial [Arabidopsis thaliana]	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01945g01009.1	sp|P61992|RS4_PYRAB	****	30S ribosomal protein S4	IPR001912 (Ribosomal protein S4/S9, N-terminal), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0006412 (translation), GO:0015935 (small ribosomal subunit), GO:0019843 (rRNA binding)
Niben101Ctg15556g00004.1	sp|Q7SYK1|TGT_DANRE	--**	Queuine tRNA-ribosyltransferase	IPR002616 (tRNA-guanine(15) transglycosylase-like)	GO:0006400 (tRNA modification), GO:0008479 (queuine tRNA-ribosyltransferase activity), GO:0008616 (queuosine biosynthetic process)
Niben101Scf01818g07006.1	sp|O80340|ERF78_ARATH	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04198g06002.1	AT3G12600.1	****	nudix hydrolase homolog 16 LENGTH=180	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf04418g02004.1	sp|O74539|MAK3_SCHPO	--*-	Peroxide stress-activated histidine kinase mak3		
Niben101Scf00447g02010.1	sp|O04616|CUT1A_ARATH	***-	Protein CURVATURE THYLAKOID 1A, chloroplastic	IPR025564 (Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain)	
Niben101Scf02749g05011.1	AT1G30040.1	*-*-	gibberellin 2-oxidase LENGTH=341	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf04748g02006.1	sp|P0DH85|REM10_ARATH	--*-	B3 domain-containing protein REM10	IPR015300 (DNA-binding pseudobarrel domain)	
Niben101Scf01310g05004.1	AT1G69080.1	***-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=223	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf02188g02013.1	AT5G13140.1	*-*-	Pollen Ole e 1 allergen and extensin family protein LENGTH=267	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf08341g06012.1	sp|Q3UHD9|AGAP2_MOUSE	--**	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf00963g05042.1	ref|XP_007026747.1|	--*-	TATA box-binding protein-associated factor RNA polymerase I subunit C, putative [Theobroma cacao] gb|EOY07249.1| TATA box-binding protein-associated factor RNA polymerase I subunit C, putative [Theobroma cacao]		
Niben101Scf01958g06005.1			Unknown protein		
Niben101Scf02949g10006.1	sp|Q7NZU6|MSBA_CHRVO	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf05993g01005.1	sp|Q2RFK3|SELA_MOOTA	--*-	L-seryl-tRNA(Sec) selenium transferase		
Niben101Scf11844g01001.1	ref|WP_018199143.1|	*-*-	MULTISPECIES: hypothetical protein [Hydrogenedentes]	IPR025150 (Domain of unknown function DUF4091)	
Niben101Scf00261g01006.1	sp|Q9FVQ6|PILR1_ARATH	***-	Pinoresinol reductase 1	IPR016040 (NAD(P)-binding domain)	
Niben101Scf05554g00013.1	sp|Q2YT46|GRPE_STAAB	*-*-	Protein GrpE	IPR000740 (GrpE nucleotide exchange factor)	GO:0000774 (adenyl-nucleotide exchange factor activity), GO:0006457 (protein folding), GO:0042803 (protein homodimerization activity), GO:0051087 (chaperone binding)
Niben101Scf01685g07003.1	sp|Q9LSQ4|GH36_ARATH	***-	Indole-3-acetic acid-amido synthetase GH3.6	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf04388g02007.1	sp|Q7SXW3|LRC40_DANRE	*-*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0043531 (ADP binding)
Niben101Scf05417g01016.1	gb|KEH18878.1|	***-	Ripening related protein family [Medicago truncatula]		
Niben101Scf01423g01005.1	sp|Q8DBG3|GLND_VIBVU	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf03370g00004.1	ref|NP_001063350.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf05357g00006.1	AT5G05550.2	****	sequence-specific DNA binding transcription factors LENGTH=249	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf03817g12026.1	sp|Q58445|RPOA1_METJA	*-**	DNA-directed RNA polymerase subunit A'	IPR015700 (DNA-directed RNA polymerase III subunit RPC1)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0032549 (ribonucleoside binding)
Niben101Scf20935g00022.1	gb|KAK46027.1|	*-*-	electron transfer flavoprotein-ubiquinone oxidoreductase [Burkholderia sp. MP-1]		
Niben101Scf01739g08024.1	sp|F4JJE0|CCT2_ARATH	***-	Choline-phosphate cytidylyltransferase 2	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process)
Niben101Scf07759g01010.1	AT1G02660.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=713	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf05279g03005.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02044g06016.1			Unknown protein		
Niben101Scf05697g05017.1	sp|Q6H8D5|COB22_ORYSJ	--*-	Coatomer subunit beta'-2	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04117g00003.1	sp|Q9SLB7|LBD16_ARATH	*-*-	LOB domain-containing protein 16	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf11622g00002.1	ref|XP_007039066.1|	*-*-	Gamma-irradiation and mitomycin c induced 1, putative isoform 4 [Theobroma cacao] gb|EOY23567.1| Gamma-irradiation and mitomycin c induced 1, putative isoform 4 [Theobroma cacao]		
Niben101Scf15632g00022.1	sp|B0K5A3|FTSH1_THEPX	*-**	ATP-dependent zinc metalloprotease FtsH 1	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01061g07018.1	sp|Q8LBA6|PIS1_ARATH	***-	CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1	IPR000462 (CDP-alcohol phosphatidyltransferase)	GO:0008654 (phospholipid biosynthetic process), GO:0016020 (membrane), GO:0016780 (phosphotransferase activity, for other substituted phosphate groups)
Niben101Scf06176g02021.1	sp|Q9LX51|FBL64_ARATH	*-*-	F-box/LRR-repeat protein	IPR001810 (F-box domain), IPR023410 (14-3-3 domain)	GO:0005515 (protein binding)
Niben101Scf11184g00005.1	sp|Q9C9U3|DOX2_ARATH	*-*-	Alpha-dioxygenase 2		
Niben101Scf03993g03015.1	ref|XP_007010430.1|	*-*-	Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao] gb|EOY19240.1| Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]	IPR019315 (Kinase phosphorylation domain)	
Niben101Scf02971g04010.1	sp|Q8L9S1|R18AL_ARATH	*-*-	60S ribosomal protein L18a-like protein		
Niben101Scf08419g01024.1	sp|P49094|ASNS_MAIZE	*-*-	Asparagine synthetase [glutamine-hydrolyzing]	IPR024286 (Domain of unknown function DUF3700), IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf11744g00005.1	AT3G26600.1	*-*-	armadillo repeat only 4 LENGTH=615	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf03550g00024.1	sp|A4W9T2|MDTK_ENT38	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01974g00013.1	AT5G47710.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=166	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf02043g00010.1	AT2G44860.1	***-	Ribosomal protein L24e family protein LENGTH=159	IPR000988 (Ribosomal protein L24e-related), IPR023441 (Ribosomal protein L24e domain)	GO:0042254 (ribosome biogenesis)
Niben101Scf03037g01002.1	emb|CDY50071.1|	***-	BnaC05g30800D [Brassica napus]	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf00372g04013.1	sp|Q6FRZ9|ATM_CANGA	*-*-	Serine/threonine-protein kinase TEL1	IPR011009 (Protein kinase-like domain), IPR014009 (PIK-related kinase), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf03939g05009.1	sp|P0ACD6|ISCU_ECO57	****	Iron-sulfur cluster assembly scaffold protein IscU	IPR002871 (NIF system FeS cluster assembly, NifU, N-terminal)	GO:0005506 (iron ion binding), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf06668g07004.1	ref|XP_007040493.1|	***-	PA-domain containing subtilase family protein [Theobroma cacao] gb|EOY24994.1| PA-domain containing subtilase family protein [Theobroma cacao]		
Niben101Scf00116g01003.1	sp|Q6EPP9|GRF10_ORYSJ	*-*-	Growth-regulating factor 10	IPR001841 (Zinc finger, RING-type), IPR014977 (WRC)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05025g08009.1	sp|Q93V93|PER44_ARATH	****	Peroxidase 44	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01572g01002.1	sp|Q6DBP8|GAT11_ARATH	*-**	GATA transcription factor 11	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02635g04006.1			Unknown protein		
Niben101Scf08142g00018.1	sp|Q9BX46|RBM24_HUMAN	*-**	RNA-binding protein 24	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05620g03002.1	sp|Q9ZPQ3|GEK1_ARATH	****	D-aminoacyl-tRNA deacylase	IPR007508 (D-aminoacyl-tRNA deacylase)	GO:0016788 (hydrolase activity, acting on ester bonds), GO:0051499 (D-aminoacyl-tRNA deacylase activity)
Niben101Scf11623g00005.1	sp|Q7XJ98|KATAM_ARATH	***-	Xyloglucan galactosyltransferase KATAMARI1	IPR004263 (Exostosin-like)	
Niben101Scf02353g01015.1	sp|B8PAR0|RSSA_POSPM	****	40S ribosomal protein S0	IPR001865 (Ribosomal protein S2), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf00726g00014.1	emb|CDX73668.1|	***-	BnaC08g23350D [Brassica napus]		
Niben101Ctg14768g00004.1	sp|A1S7C8|ACSA_SHEAM	*-*-	Acetyl-coenzyme A synthetase	IPR025110 (AMP-binding enzyme C-terminal domain)	
Niben101Scf15836g03007.1	sp|C9REN7|PSB_METVM	****	Proteasome subunit beta	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf00576g00008.1	AT5G11090.1	*-*-	serine-rich protein-related LENGTH=217		
Niben101Scf03221g01001.1	tpg|DAA35365.1|	***-	TPA: hypothetical protein ZEAMMB73_883312 [Zea mays]	IPR025344 (Domain of unknown function DUF4101)	
Niben101Scf00505g07001.1	sp|Q65SZ8|GLND_MANSM	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf07160g00006.1	AT4G38840.1	***-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02549g03007.1	AT2G43950.1	***-	chloroplast outer envelope protein 37 LENGTH=343		
Niben101Scf02621g02019.1			Unknown protein		
Niben101Scf00369g20007.1			Unknown protein		
Niben101Scf03096g01003.1	sp|Q9LJ44|COL12_ARATH	****	Zinc finger protein CONSTANS-LIKE 12	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf01145g00001.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf10352g00004.1	sp|Q6IE26|EPHX4_MOUSE	***-	Epoxide hydrolase 4	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf02041g00002.1	sp|Q7XCK6|CHI8_ORYSJ	****	Chitinase 8	IPR016283 (Glycoside hydrolase, family 19), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf00747g01020.1	sp|Q1DQ20|IF4A_COCIM	****	ATP-dependent RNA helicase eIF4A	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf03865g05006.1	sp|F4IME2|MSL8_ARATH	***-	Mechanosensitive ion channel protein 8	IPR006685 (Mechanosensitive ion channel MscS)	GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00801g04022.1	emb|CDY51258.1|	***-	BnaCnng20370D [Brassica napus]		
Niben101Scf06380g00002.1	sp|Q8GYP3|RDM4_ARATH	*-*-	RNA-directed DNA methylation 4		
Niben101Scf01422g00009.1	ref|WP_009457354.1|	--*-	regulator [Fischerella sp. JSC-11] gb|EHC13058.1| response regulator receiver protein [Fischerella sp. JSC-11]	IPR022552 (Uncharacterised protein family Ycf55)	
Niben101Scf01703g02005.1	AT2G29050.1	***-	RHOMBOID-like 1 LENGTH=389	IPR002610 (Peptidase S54, rhomboid)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf06171g02032.1	AT1G75330.1	*-**	ornithine carbamoyltransferase LENGTH=375	IPR006041 (Pollen Ole e 1 allergen/extensin), IPR006130 (Aspartate/ornithine carbamoyltransferase)	GO:0006520 (cellular amino acid metabolic process), GO:0016597 (amino acid binding), GO:0016743 (carboxyl- or carbamoyltransferase activity)
Niben101Scf09442g00004.1	AT1G62940.1	*-*-	acyl-CoA synthetase 5 LENGTH=542	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03733g01006.1	sp|Q8RXR2|CLCF_ARATH	****	Chloride channel protein CLC-f	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02237g03013.1	sp|P54776|PRS6A_SOLLC	*-*-	26S protease regulatory subunit 6A homolog		
Niben101Scf27706g00005.1	sp|Q9H6H4|REEP4_HUMAN	--*-	Receptor expression-enhancing protein 4	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf27139g00016.1	gb|EMT08986.1|	***-	Pre-mRNA-processing factor 19-2-like protein [Aegilops tauschii]	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013915 (Pre-mRNA-splicing factor 19), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf07629g00001.1	sp|Q9SIU2|NCBP1_ARATH	*-**	Nuclear cap-binding protein subunit 1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0016070 (RNA metabolic process)
Niben101Scf06637g00016.1	gb|AGW82777.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia mexicana]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf02838g07016.1	sp|Q9SK27|ENL1_ARATH	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf08470g00002.1	AT1G04220.1	***-	3-ketoacyl-CoA synthase 2 LENGTH=528	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01814g03009.1	sp|Q9HDW7|ATC2_SCHPO	*-*-	Calcium-transporting ATPase 2	IPR006068 (Cation-transporting P-type ATPase, C-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding)
Niben101Scf10193g00017.1			Unknown protein		
Niben101Scf03978g04007.1	sp|F4IAT2|THOC2_ARATH	***-	THO complex subunit 2	IPR008896 (Uncharacterised protein family Ycf1), IPR018781 (Transmembrane protein adipocyte-associated 1), IPR021418 (THO complex, subunitTHOC2, C-terminal), IPR021726 (THO complex, subunitTHOC2, N-terminal)	
Niben101Scf20652g00002.1	sp|Q96512|PER9_ARATH	*-**	Peroxidase 9	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00315g00002.1	sp|Q9ZUW3|PP172_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf01413g01007.1	sp|Q10NX8|BGAL6_ORYSJ	***-	Beta-galactosidase 6	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf03975g00004.1	AT5G57230.1	***-	Thioredoxin superfamily protein LENGTH=160		
Niben101Scf02647g00004.1	sp|Q9SFC7|FB135_ARATH	*-*-	F-box protein		
Niben101Scf00536g15017.1	sp|P16107|CHSY_PETCR	***-	Chalcone synthase	IPR011141 (Polyketide synthase, type III), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0009058 (biosynthetic process), GO:0016746 (transferase activity, transferring acyl groups), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02110g00025.1	sp|P50134|DCOR_DATST	*-*-	Ornithine decarboxylase	IPR000183 (Ornithine/DAP/Arg decarboxylase)	GO:0003824 (catalytic activity), GO:0006596 (polyamine biosynthetic process)
Niben101Scf06228g00010.1	AT1G62020.1	***-	Coatomer, alpha subunit LENGTH=1216	IPR011048 (Cytochrome cd1-nitrite reductase-like, haem d1 domain), IPR016391 (Coatomer alpha subunit)	GO:0005198 (structural molecule activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030126 (COPI vesicle coat)
Niben101Scf00801g02007.1	emb|CDY22510.1|	***-	BnaC03g23200D [Brassica napus]		
Niben101Scf06437g04021.1	sp|O45685|MF2NB_CAEEL	--*-	Protein MEF2BNB homolog	IPR019320 (Uncharacterised protein family UPF0402)	
Niben101Scf03145g02011.1	sp|Q8GZ13|BEE1_ARATH	*-*-	Transcription factor BEE 1		
Niben101Scf19872g00010.1	sp|Q5JGV6|HELS_THEKO	*-**	ATP-dependent DNA helicase Hel308	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf04318g00005.1			Unknown protein		
Niben101Ctg14233g00001.1	sp|P69781|GAT12_ARATH	****	GATA transcription factor 12	IPR016679 (Transcription factor, GATA, plant)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding), GO:0045893 (positive regulation of transcription, DNA-templated)
Niben101Scf00314g01001.1	ref|NP_001046162.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf05596g00026.1	gb|KEH21034.1|	*-*-	eukaryotic aspartyl protease family protein [Medicago truncatula]	IPR001461 (Aspartic peptidase), IPR010604 (Plant nuclear matrix 1), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03947g01007.1	gb|KEH27592.1|	***-	rhodanese-related sulfurtransferase [Medicago truncatula]	IPR001763 (Rhodanese-like domain)	
Niben101Ctg13414g00002.1	sp|Q25378|KPC1_LYTPI	--**	Protein kinase C	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04905g01006.1	AT1G24350.3	***-	Acid phosphatase/vanadium-dependent haloperoxidase-related protein LENGTH=186	IPR003832 (Acid phosphatase/vanadium-dependent haloperoxidase-related)	
Niben101Scf10242g00002.1	sp|P49098|CYB5_TOBAC	*-*-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf04044g19018.1	sp|Q570N1|PP2B3_ARATH	*-*-	F-box protein PP2-B3	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05664g03019.1	AT5G25270.1	*-*-	Ubiquitin-like superfamily protein LENGTH=658		
Niben101Scf09424g04003.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02220g04002.1	AT1G21200.1	***-	sequence-specific DNA binding transcription factors LENGTH=443		
Niben101Scf00571g08006.1	AT3G13600.1	***-	calmodulin-binding family protein LENGTH=605		
Niben101Scf01304g06001.1	sp|Q84WU2|UBP13_ARATH	*-**	Ubiquitin carboxyl-terminal hydrolase 13	IPR028889 (Ubiquitin specific protease domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf08679g03001.1			Unknown protein		
Niben101Scf02738g04006.1	sp|Q3E965|GDU5_ARATH	-**-	Protein GLUTAMINE DUMPER 5		
Niben101Scf09172g00010.1	sp|Q9JZ47|PLSC_NEIMB	*-**	1-acyl-sn-glycerol-3-phosphate acyltransferase	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf01526g08010.1	sp|O23140|AP2M_ARATH	*-**	AP-2 complex subunit mu	IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf09335g00008.1	AT1G25540.1	***-	phytochrome and flowering time regulatory protein (PFT1) LENGTH=836	IPR021419 (Mediator complex, subunit Med25, von Willebrand factor type A)	
Niben101Scf13180g01004.1	sp|Q5HHQ4|TRXB_STAAC	****	Thioredoxin reductase	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08570g04003.1	sp|P0CO03|H2B_CRYNB	***-	Histone H2B	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf04160g00013.1	sp|Q5P4P4|YIDC_AROAE	*-**	Membrane protein insertase YidC	IPR001708 (Membrane insertase OXA1/ALB3/YidC), IPR028055 (Membrane insertase YidC/Oxa1, C-terminal)	GO:0016021 (integral component of membrane), GO:0051205 (protein insertion into membrane)
Niben101Scf02569g02031.1	sp|Q8LGN0|GLR27_ARATH	*-*-	Glutamate receptor 2.7	IPR028082 (Periplasmic binding protein-like I)	
Niben101Scf02828g03022.1			Unknown protein		
Niben101Scf07850g05004.1	ref|WP_031237450.1|	*-*-	nucleoside-diphosphate sugar epimerase [Asticcacaulis sp. AC460]	IPR009367 (Mitochondrial fission protein ELM1-like)	
Niben101Scf08522g02014.1	AT4G16340.1	*-**	guanyl-nucleotide exchange factors;GTPase binding;GTP binding LENGTH=1830	IPR026791 (Dedicator of cytokinesis)	GO:0005085 (guanyl-nucleotide exchange factor activity), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf00073g03006.1	sp|Q9C7R6|PUB17_ARATH	***-	U-box domain-containing protein 17	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf07027g04001.1	AT2G33620.1	*-*-	AT hook motif DNA-binding family protein LENGTH=351	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf06436g02004.1	AT3G61270.1	*-*-	Arabidopsis thaliana protein of unknown function (DUF821) LENGTH=498	IPR006598 (Lipopolysaccharide-modifying protein)	
Niben101Scf05824g14008.1	ref|XP_007049519.1|	*-*-	Mediator of RNA polymerase II transcription subunit 19 [Theobroma cacao] gb|EOX93676.1| Mediator of RNA polymerase II transcription subunit 19 [Theobroma cacao]		
Niben101Scf01297g02011.1	sp|Q5R7B8|KLH20_PONAB	*-*-	Kelch-like protein 20	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR013989 (Development/cell death domain), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf01051g01015.1	AT5G19670.1	*-*-	Exostosin family protein LENGTH=610	IPR004263 (Exostosin-like)	
Niben101Scf04953g09008.1	sp|B4FUS3|CNR8_MAIZE	***-	Cell number regulator 8	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf12033g00007.1	gb|ACG26001.1|	***-	COV1-like protein [Zea mays]	IPR007462 (Protein of unknown function DUF502)	
Niben101Scf12672g00009.1	ref|XP_002515467.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46916.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05056g00001.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03904g00010.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01239g00004.1	sp|P29829|GBB2_DROME	--**	Guanine nucleotide-binding protein subunit beta-2	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01463g00013.1	sp|A8EX70|RUVC_ARCB4	--*-	Crossover junction endodeoxyribonuclease RuvC		
Niben101Scf02821g02002.1	ref|XP_002516369.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF45986.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00318g07003.1	ref|XP_007014313.1|	--*-	Fasciclin domain-containing protein, putative isoform 1 [Theobroma cacao] ref|XP_007014314.1| Fasciclin domain-containing protein, putative isoform 1 [Theobroma cacao] gb|EOY31932.1| Fasciclin domain-containing protein, putative isoform 1 [Theobroma cacao] gb|EOY31933.1| Fasciclin domain-containing protein, putative isoform 1 [Theobroma cacao]		
Niben101Scf00494g07016.1	sp|P43735|DNAJ_HAEIN	--*-	Chaperone protein DnaJ	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf17834g00014.1	sp|A0PMB8|RL17_MYCUA	*-*-	50S ribosomal protein L17	IPR000456 (Ribosomal protein L17)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08160g05013.1	sp|P52674|CYSJ_THIRO	*-**	Sulfite reductase [NADPH] flavoprotein alpha-component	IPR001094 (Flavodoxin), IPR007197 (Radical SAM), IPR013785 (Aldolase-type TIM barrel), IPR013917 (tRNA wybutosine-synthesis), IPR029039 (Flavoprotein-like)	GO:0003824 (catalytic activity), GO:0005506 (iron ion binding), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0051536 (iron-sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03714g04011.1	ref|XP_003602715.1|	--**	Protein SUPPRESSOR OF GENE SILENCING-like protein [Medicago truncatula] gb|AES72966.1| suppressor OF protein silencing protein [Medicago truncatula]	IPR005380 (XS domain)	GO:0031047 (gene silencing by RNA)
Niben101Scf14591g01003.1	AT2G36220.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=263		
Niben101Scf07080g03010.1	AT3G48660.1	***-	Protein of unknown function (DUF 3339) LENGTH=89	IPR021775 (Protein of unknown function DUF3339)	
Niben101Scf01086g00012.1	ref|XP_003605681.1|	***-	Ripening-related protein [Medicago truncatula]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf15124g00010.1	sp|O64722|ZHD3_ARATH	*-*-	Zinc-finger homeodomain protein 3	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf01181g03027.1	ref|XP_007038601.1|	--*-	F-box family protein, putative isoform 1 [Theobroma cacao] ref|XP_007038602.1| F-box family protein, putative isoform 1 [Theobroma cacao] ref|XP_007038603.1| F-box family protein, putative isoform 1 [Theobroma cacao] gb|EOY23102.1| F-box family protein, putative isoform 1 [Theobroma cacao] gb|EOY23103.1| F-box family protein, putative isoform 1 [Theobroma cacao] gb|EOY23104.1| F-box family protein, putative isoform 1 [Theobroma cacao]		
Niben101Scf05453g00018.1	gb|KEH18933.1|	***-	BON1-associated-like protein [Medicago truncatula]	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01357g00014.1	AT5G22220.2	****	E2F transcription factor 1 LENGTH=469	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR015633 (E2F Family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005667 (transcription factor complex), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01623g11007.1	AT4G02120.1	****	CTP synthase family protein LENGTH=556	IPR004468 (CTP synthase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003883 (CTP synthase activity), GO:0006221 (pyrimidine nucleotide biosynthetic process)
Niben101Scf00067g02003.1	AT2G25910.2	****	3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein LENGTH=342	IPR004087 (K Homology domain), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf05809g00012.1	sp|P93479|RETO_PAPSO	*-*-	Reticuline oxidase	IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01669g04009.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf02283g00017.1	ref|XP_002890961.1|	*-**	DNA binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH67220.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]	IPR005508 (B3 domain-containing protein), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf12732g00003.1	gb|AAP53948.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]		
Niben101Scf00158g04001.1	sp|Q9SD34|C3H44_ARATH	*-**	Zinc finger CCCH domain-containing protein 44	IPR003169 (GYF), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01998g07002.1	sp|Q567C6|ZN367_DANRE	--*-	Zinc finger protein 367	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR022755 (Zinc finger, double-stranded RNA binding)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf03716g00018.1	gb|ABF99907.1|	--*-	retrotransposon protein, putative, LINE subclass [Oryza sativa Japonica Group]	IPR026960 (Reverse transcriptase zinc-binding domain)	
Niben101Scf03128g07024.1	sp|Q7XWU8|EXPA1_ORYSJ	***-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf07932g00006.1	AT1G19110.1	***-	inter-alpha-trypsin inhibitor heavy chain-related LENGTH=754	IPR002035 (von Willebrand factor, type A)	
Niben101Scf02581g05001.1	sp|Q9NUW8|TYDP1_HUMAN	*-**	Tyrosyl-DNA phosphodiesterase 1	IPR010347 (Tyrosyl-DNA phosphodiesterase I), IPR014905 (HIRAN domain), IPR027415 (Tyrosyl-DNA phosphodiesterase C-terminal domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0008081 (phosphoric diester hydrolase activity), GO:0008270 (zinc ion binding), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf21890g00006.1	sp|Q6F358|PLA6_ORYSJ	*-*-	Phospholipase A1-II 6	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf32157g01002.1	emb|CDY29863.1|	*-*-	BnaA03g48840D [Brassica napus]	IPR007789 (Protein of unknown function DUF688)	
Niben101Scf06933g02005.1	sp|Q5Z807|C3H46_ORYSJ	*-*-	Zinc finger CCCH domain-containing protein 46	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf01819g03010.1	sp|Q402F3|TOM3_TOBAC	***-	Tobamovirus multiplication protein 3	IPR009457 (Domain of unknown function DUF1084)	
Niben101Scf02235g04023.1	sp|A4QL96|RPOC2_LEPVR	*-**	DNA-directed RNA polymerase subunit beta''	IPR007081 (RNA polymerase Rpb1, domain 5)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf00860g03019.1	sp|Q57GH3|MSRA_SALCH	****	Peptide methionine sulfoxide reductase MsrA	IPR002569 (Peptide methionine sulphoxide reductase MsrA), IPR028427 (Peptide methionine sulfoxide reductase)	GO:0006979 (response to oxidative stress), GO:0008113 (peptide-methionine (S)-S-oxide reductase activity), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0030091 (protein repair), GO:0055114 (oxidation-reduction process)
Niben101Scf01330g01001.1	emb|CDY46149.1|	***-	BnaA04g14370D [Brassica napus]		
Niben101Scf09063g00009.1	sp|Q8W234|SEUSS_ARATH	*-*-	Transcriptional corepressor SEUSS	IPR029005 (LIM-domain binding protein/SEUSS)	
Niben101Scf05061g00002.1			Unknown protein		
Niben101Scf03918g00026.1	gb|AAM63663.1|	***-	FKBP-type peptidyl-prolyl cis-trans isomerase, putative [Arabidopsis thaliana]	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf18544g00001.1	sp|Q96AA3|RFT1_HUMAN	*-*-	Protein RFT1 homolog	IPR007594 (RFT1)	GO:0005319 (lipid transporter activity), GO:0006869 (lipid transport), GO:0016021 (integral component of membrane)
Niben101Scf02111g02003.1	AT1G62940.1	***-	acyl-CoA synthetase 5 LENGTH=542	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04003g05003.1	sp|Q93VJ4|BEE2_ARATH	--*-	Transcription factor BEE 2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01051g08001.1	AT1G62770.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=204	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf06004g00029.1	sp|Q9SI78|PPR93_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04925g00004.1	sp|Q08170|SRSF4_HUMAN	*-*-	Serine/arginine-rich splicing factor 4	IPR001878 (Zinc finger, CCHC-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02737g01003.1	AT3G18670.1	*-*-	Ankyrin repeat family protein LENGTH=598	IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	
Niben101Scf07728g02006.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01616g07007.1	sp|A3KN83|SBNO1_HUMAN	*-*-	Protein strawberry notch homolog 1	IPR026741 (Protein strawberry notch), IPR026937 (Strawberry notch, helicase C domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03648g01013.1	sp|P15252|REF_HEVBR	***-	Rubber elongation factor protein	IPR008802 (Rubber elongation factor)	
Niben101Scf11224g01008.1	AT5G53900.2	***-	Serine/threonine-protein kinase WNK (With No Lysine)-related LENGTH=377	IPR025610 (Transcription factor MYC/MYB N-terminal)	
Niben101Scf16592g00013.1	sp|P49637|R27A3_ARATH	***-	60S ribosomal protein L27a-3	IPR021131 (Ribosomal protein L18e/L15P)	
Niben101Scf00218g03011.1	sp|Q5RC80|RBM39_PONAB	--**	RNA-binding protein 39	IPR001876 (Zinc finger, RanBP2-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf05605g00003.1	sp|P30962|CCMC_BRADU	*-**	Heme exporter protein C	IPR003557 (Cytochrome c-type biogenesis protein CcmC)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf00095g02005.1	sp|O23920|HPPD_DAUCA	****	4-hydroxyphenylpyruvate dioxygenase	IPR005956 (4-hydroxyphenylpyruvate dioxygenase), IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	GO:0003868 (4-hydroxyphenylpyruvate dioxygenase activity), GO:0009072 (aromatic amino acid family metabolic process), GO:0016701 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen), GO:0055114 (oxidation-reduction process)
Niben101Scf02320g00019.1	sp|A1SNI7|RL17_NOCSJ	*-*-	50S ribosomal protein L17	IPR000456 (Ribosomal protein L17)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00151g05008.1	ref|XP_003629733.1|	****	Ran-binding protein [Medicago truncatula] gb|AET04209.1| importin beta-3, putative [Medicago truncatula]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf03467g00004.1	emb|CDY35763.1|	***-	BnaC02g38310D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf08322g01007.1	sp|P12449|ENV_HV2SB	--*-	Envelope glycoprotein gp160	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf26564g00006.1	gb|ABF81414.1|	*-*-	TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf03816g02016.1	sp|Q55FS2|STK4L_DICDI	*-**	Serine/threonine-protein kinase 4 homolog B	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11261g00003.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02417g06009.1	sp|Q9SEK3|HXK1_SPIOL	***-	Hexokinase-1	IPR001312 (Hexokinase)	GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf01395g01005.1	sp|O48916|FAH1_ARATH	****	Fatty acid 2-hydroxylase 1	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04407g02026.1	sp|Q7M1E7|PGLR2_CHAOB	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf12009g00004.1	ref|NP_001078709.1|	*-*-	ECA1 gametogenesis related family protein [Arabidopsis thaliana] gb|AED95115.1| ECA1 gametogenesis related family protein [Arabidopsis thaliana]	IPR008502 (Prolamin-like domain)	
Niben101Scf08982g00001.1	gb|KEH18842.1|	****	ARID/bright DNA-binding domain protein [Medicago truncatula]	IPR001606 (ARID DNA-binding domain)	GO:0003677 (DNA binding)
Niben101Scf03421g01004.1	sp|Q6YXH8|CCD41_ORYSJ	***-	Cyclin-D4-1	IPR013763 (Cyclin-like)	
Niben101Scf04313g00001.1			Unknown protein		
Niben101Scf03973g01003.1	sp|Q9FYC8|Y3482_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf06059g00001.1	AT3G23510.1	*-*-	Cyclopropane-fatty-acyl-phospholipid synthase LENGTH=867	IPR003333 (Mycolic acid cyclopropane synthase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008610 (lipid biosynthetic process)
Niben101Scf07880g03024.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf01292g01010.1	ref|WP_017312542.1|	****	GCN5 family acetyltransferase [Fischerella sp. PCC 9339]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf06890g01024.1	emb|CDX96229.1|	***-	BnaC02g14220D [Brassica napus]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf09153g05021.1	AT1G05270.1	***-	TraB family protein LENGTH=371	IPR002816 (Pheromone shutdown, TraB)	
Niben101Scf00612g02001.1	gb|AAO72706.1|	***-	heavy meromyosin-like protein [Oryza sativa Japonica Group]		
Niben101Scf02854g00005.1	sp|O81635|ATK4_ARATH	--*-	Kinesin-4		
Niben101Scf00465g01005.1	ref|XP_002529263.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF33095.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01089g00002.1	sp|Q05967|PGLR_TOBAC	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09387g03021.1	ref|NP_001189829.1|	--*-	U3snoRNP10 and NUC211 domain-containing protein [Arabidopsis thaliana] gb|AEE74409.1| U3snoRNP10 and NUC211 domain-containing protein [Arabidopsis thaliana]		
Niben101Scf02049g00002.1	sp|Q9S7R3|LSH10_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	IPR006936 (ALOG domain)	
Niben101Scf05306g02029.1	sp|A6MFK9|CRVP_DEMVE	--*-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	
Niben101Scf12541g00021.1	ref|XP_002523546.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF38885.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02468g03001.1	sp|Q9LRR2|TPS17_ARATH	****	Terpenoid synthase 17	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf03445g02016.1	sp|Q8VH51|RBM39_MOUSE	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR025742 (Cleavage stimulation factor subunit 2, hinge domain), IPR026896 (Transcription termination and cleavage factor C-terminal domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01184g06007.1	sp|Q9V109|RS7_PYRAB	*-*-	30S ribosomal protein S7	IPR000235 (Ribosomal protein S5/S7), IPR023798 (Ribosomal protein S7 domain)	GO:0006412 (translation)
Niben101Scf09011g00007.1	sp|Q7V491|MNME_PROMM	****	tRNA modification GTPase MnmE	IPR004520 (tRNA modification GTPase MnmE), IPR005225 (Small GTP-binding protein domain), IPR025867 (tRNA modification GTPase MnmE C-terminal domain), IPR027266 (GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1), IPR027368 (tRNA modification GTPase MnmE domain 2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005515 (protein binding), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006400 (tRNA modification)
Niben101Scf17849g00004.1	sp|Q8VID1|DHRS4_RAT	-***	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf17290g00008.1	sp|Q9LVC9|RLA32_ARATH	*-*-	60S acidic ribosomal protein P3-2	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf00868g00005.1	AT1G46264.1	****	heat shock transcription factor B4 LENGTH=348	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04104g00009.1	sp|Q41001|BCP_PEA	*-*-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf11744g01001.1	sp|Q9SS98|OLEO5_ARATH	***-	Oleosin 5	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf00777g01010.1	sp|O22815|MLO5_ARATH	***-	MLO-like protein 5	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf06444g02007.1	sp|Q06GS0|RPOC2_PIPCE	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf18378g00006.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01063g11023.1	sp|Q5PGH0|MSBA_SALPA	*-*-	Lipid A export ATP-binding/permease protein MsbA	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01485g02012.1	ref|XP_007039626.1|	*-*-	Pleckstrin (PH) domain-containing protein isoform 3 [Theobroma cacao] gb|EOY24127.1| Pleckstrin (PH) domain-containing protein isoform 3 [Theobroma cacao]	IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf05955g03053.1	emb|CDX74528.1|	*-*-	BnaA04g08610D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf02442g00015.1	sp|Q86TZ1|TTC6_HUMAN	*-*-	Tetratricopeptide repeat protein 6	IPR006636 (Heat shock chaperonin-binding), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01968g00002.1	sp|Q9M352|RL362_ARATH	***-	60S ribosomal protein L36-2	IPR000509 (Ribosomal protein L36e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01042g01005.1	sp|Q8LF89|GRXC8_ARATH	***-	Glutaredoxin-C8	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Ctg08407g00002.1	sp|O48540|MAN1_SOLLC	***-	Mannan endo-1,4-beta-mannosidase 1	IPR017853 (Glycoside hydrolase superfamily)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf01304g09002.1			Unknown protein		
Niben101Scf05310g00007.1	sp|Q2QXB2|TLP14_ORYSJ	***-	Tubby-like F-box protein 14	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf00263g02003.1	AT3G05840.2	****	Protein kinase superfamily protein LENGTH=409	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04610g07027.1	AT1G19430.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=724	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf00817g06013.1	AT4G01070.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf11071g00009.1	gb|AII50299.1|	-**-	membrane protein [Synechococcus sp. KORDI-52]	IPR019275 (Protein of unknown function DUF2301)	
Niben101Scf02869g13001.1	AT2G37180.1	*-*-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01574g01003.1	AT5G42650.1	***-	allene oxide synthase LENGTH=518	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02784g00009.1	sp|B6YR61|NUOH_AZOPC	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf05805g01001.1			Unknown protein		
Niben101Scf11225g00006.1	gb|ACF22012.1|	***-	NBS-coding resistance gene protein [Nicotiana tabacum]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf00842g00003.1	sp|Q9LSS3|SEN22_ARATH	*-*-	tRNA-splicing endonuclease subunit Sen2-2		
Niben101Scf02502g00001.1	AT2G28085.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=124	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03483g00002.1	sp|Q40588|ASO_TOBAC	***-	L-ascorbate oxidase	IPR017760 (L-ascorbate oxidase, plants)	GO:0005507 (copper ion binding), GO:0005576 (extracellular region), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf11446g00008.1	AT2G31010.1	*-**	Protein kinase superfamily protein LENGTH=775	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02571g01008.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf10323g00001.1	sp|P48605|TCPG_DROME	*-*-	T-complex protein 1 subunit gamma	IPR002423 (Chaperonin Cpn60/TCP-1), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027409 (GroEL-like apical domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process)
Niben101Scf10900g00007.1	sp|Q6NRH0|KLH12_XENLA	--*-	Kelch-like protein 12	IPR015915 (Kelch-type beta propeller), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf02361g03010.1	sp|Q9HAV0|GBB4_HUMAN	*-**	Guanine nucleotide-binding protein subunit beta-4	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf09141g02006.1	sp|D7LBN4|CSPLH_ARALL	*-*-	CASP-like protein 4B1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf00072g05001.1	sp|Q9LH31|TPS30_ARATH	--**	Terpenoid synthase 30	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf05483g06007.1	ref|XP_007052619.1|	***-	UPF0182 protein jk1603, putative [Theobroma cacao] gb|EOX96776.1| UPF0182 protein jk1603, putative [Theobroma cacao]		
Niben101Scf03015g08005.1	sp|Q0UY70|NM111_PHANO	****	Pro-apoptotic serine protease NMA111	IPR001940 (Peptidase S1C), IPR009003 (Trypsin-like cysteine/serine peptidase domain), IPR025926 (PDZ-like domain)	GO:0003824 (catalytic activity), GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf01729g00003.1	ref|WP_001972505.1|	***-	sodium Bile acid symporter family protein [Lept [Leptospira interrogans str. 2002000631]	IPR002657 (Bile acid:sodium symporter/arsenical resistance protein  Acr3)	GO:0016020 (membrane)
Niben101Scf03717g00005.1	ref|XP_007044794.1|	*-*-	Cyclin-related, putative isoform 2 [Theobroma cacao] gb|EOY00626.1| Cyclin-related, putative isoform 2 [Theobroma cacao]		
Niben101Scf02658g00008.1	sp|Q39255|SKP1A_ARATH	***-	SKP1-like protein 1A	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf05588g10009.1	sp|O24606|EIN3_ARATH	*-*-	Protein ETHYLENE INSENSITIVE 3		
Niben101Scf00483g01002.1	AT4G14620.1	*-*-	Protein of unknown function (DUF506) LENGTH=341	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf09792g02014.1	sp|A4QJC3|RBL_AETCO	*-**	Ribulose bisphosphate carboxylase large chain	IPR000685 (Ribulose bisphosphate carboxylase, large subunit, C-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf03638g02002.1	sp|Q9M9M4|CSLD3_ARATH	****	Cellulose synthase-like protein D3	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf04122g01009.1	sp|Q69S43|CCD61_ORYSJ	***-	Cyclin-D6-1	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf00337g02001.1	AT4G24060.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=342	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03614g01009.1	AT5G45560.1	****	Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein LENGTH=719	IPR002913 (START domain), IPR009769 (Domain of unknown function DUF1336), IPR011993 (Pleckstrin homology-like domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf02280g00007.1	sp|P92962|PROT2_ARATH	***-	Proline transporter 2	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf01323g04002.1	AT5G40190.1	***-	RNA ligase/cyclic nucleotide phosphodiesterase family protein LENGTH=183	IPR009097 (RNA ligase/cyclic nucleotide phosphodiesterase)	
Niben101Scf04847g00001.1	sp|Q9SK27|ENL1_ARATH	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf11037g00021.1	gb|KEH25572.1|	*-*-	HSP20-like chaperone superfamily protein [Medicago truncatula]	IPR008978 (HSP20-like chaperone)	
Niben101Scf04832g02024.1	AT4G38970.1	*-**	fructose-bisphosphate aldolase 2 LENGTH=398	IPR000741 (Fructose-bisphosphate aldolase, class-I), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004332 (fructose-bisphosphate aldolase activity), GO:0006096 (glycolytic process)
Niben101Scf04294g06004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02929g03034.1			Unknown protein		
Niben101Scf00613g04015.1	AT3G13020.1	*-*-	hAT transposon superfamily protein LENGTH=605	IPR003656 (Zinc finger, BED-type), IPR007021 (Domain of unknown function DUF659), IPR008906 (HAT dimerisation domain, C-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03202g07008.1	AT5G01310.1	***-	APRATAXIN-like LENGTH=912	IPR001310 (Histidine triad (HIT) protein), IPR002589 (Macro domain), IPR011146 (HIT-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0033699 (DNA 5'-adenosine monophosphate hydrolase activity)
Niben101Scf05697g11022.1	sp|Q8N6R0|MET13_HUMAN	*-*-	Methyltransferase-like protein 13	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00270g17002.1	ref|XP_002324772.2|	*-*-	mitochondrial transcription termination factor-related family protein [Populus trichocarpa] gb|EEF03337.2| mitochondrial transcription termination factor-related family protein [Populus trichocarpa]		
Niben101Scf07165g00001.1	AT1G73480.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=463	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02769g01010.1	emb|CDY45368.1|	***-	BnaA09g12530D [Brassica napus]		
Niben101Scf07576g00021.1	ref|NP_001031702.1|	--*-	PLAC8 family protein [Arabidopsis thaliana] gb|AEE84764.1| PLAC8 family protein [Arabidopsis thaliana]		
Niben101Ctg09456g00004.1	sp|Q9SR66|DML2_ARATH	*-*-	DEMETER-like protein 2	IPR028924 (Permuted single zf-CXXC unit), IPR028925 (Demeter, RRM-fold domain)	
Niben101Scf04109g04010.1	sp|Q8GXM8|MATE7_ARATH	***-	MATE efflux family protein 7	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01278g00011.1	sp|Q24JL3|STR2_ARATH	****	Thiosulfate/3-mercaptopyruvate sulfurtransferase 2	IPR001763 (Rhodanese-like domain)	GO:0004792 (thiosulfate sulfurtransferase activity)
Niben101Scf06277g03006.1	sp|A4K2W5|STK4_AOTNA	--**	Serine/threonine-protein kinase 4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03403g02021.1			Unknown protein		
Niben101Scf03298g02003.1	sp|Q8RXR2|CLCF_ARATH	*-**	Chloride channel protein CLC-f	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf06388g01023.1	sp|Q9SS60|PP210_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03482g02009.1	AT1G74640.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=370		
Niben101Scf01697g19013.1	sp|O82302|P2C29_ARATH	*-*-	Protein phosphatase 2C 29	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf05688g09016.1	sp|Q67T82|FTSH2_SYMTH	--*-	ATP-dependent zinc metalloprotease FtsH 2		
Niben101Scf01752g00002.1	AT4G04630.1	***-	Protein of unknown function, DUF584 LENGTH=168	IPR007608 (Senescence regulator S40)	
Niben101Scf08670g00028.1	sp|O22959|PER19_ARATH	****	Peroxidase 19	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00180g03007.1	AT1G61210.1	*-*-	Transducin/WD40 repeat-like superfamily protein LENGTH=1181	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR026962 (Katanin p80 subunit B1)	GO:0005515 (protein binding), GO:0008017 (microtubule binding), GO:0008352 (katanin complex), GO:0051013 (microtubule severing)
Niben101Scf03561g01022.1	sp|Q54NC0|HUS1_DICDI	****	Checkpoint protein hus1 homolog	IPR007150 (Checkpoint protein Hus1/Mec3)	GO:0000077 (DNA damage checkpoint), GO:0006281 (DNA repair), GO:0030896 (checkpoint clamp complex)
Niben101Scf15156g00001.1	sp|Q8XVT2|DAPB_RALSO	****	4-hydroxy-tetrahydrodipicolinate reductase	IPR011770 (Dihydrodipicolinate reductase, bacterial/plant)	GO:0008839 (4-hydroxy-tetrahydrodipicolinate reductase), GO:0009089 (lysine biosynthetic process via diaminopimelate), GO:0009507 (chloroplast), GO:0055114 (oxidation-reduction process), GO:0070402 (NADPH binding)
Niben101Scf04406g01006.1			Unknown protein	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf07391g04004.1	sp|P33906|DEAD_KLEPN	****	ATP-dependent RNA helicase DeaD	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf17839g01006.1	sp|Q9SE94|MTHR1_MAIZE	****	Methylenetetrahydrofolate reductase 1	IPR003171 (Methylenetetrahydrofolate reductase), IPR029041 (FAD-linked oxidoreductase-like)	GO:0004489 (methylenetetrahydrofolate reductase (NAD(P)H) activity), GO:0006555 (methionine metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf00854g11090.1	sp|Q0BQY6|ATPL_GRABC	--**	ATP synthase subunit c	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf04292g03016.1	AT5G34930.1	*-*-	arogenate dehydrogenase LENGTH=640		
Niben101Scf05404g09001.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf01166g08002.1	sp|Q9MBA1|CAO_ARATH	****	Chlorophyllide a oxygenase, chloroplastic	IPR013626 (Pheophorbide a oxygenase), IPR017941 (Rieske [2Fe-2S] iron-sulphur domain)	GO:0005506 (iron ion binding), GO:0010277 (chlorophyllide a oxygenase [overall] activity), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04922g00003.1	AT5G59110.1	*-*-	subtilisin-like serine protease-related LENGTH=172	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf00448g10013.1	sp|O23651|TPS01_ARATH	*-**	Terpenoid synthase 1	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf05226g00010.1	ref|XP_002510642.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52829.1| conserved hypothetical protein [Ricinus communis]	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf27240g00004.1	sp|B7GRV5|GLNE_BIFLS	--*-	Glutamate-ammonia-ligase adenylyltransferase		
Niben101Scf08804g03023.1	sp|Q683I9|PP295_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf05955g03056.1	sp|Q2JEZ1|SECA_FRASC	*-*-	Protein translocase subunit SecA	IPR011116 (SecA Wing/Scaffold)	GO:0016020 (membrane), GO:0017038 (protein import)
Niben101Scf04216g03001.1	AT5G16690.1	*-**	origin recognition complex subunit 3 LENGTH=734	IPR020795 (Origin recognition complex, subunit 3)	GO:0003677 (DNA binding), GO:0005664 (nuclear origin of replication recognition complex), GO:0006260 (DNA replication)
Niben101Scf06976g07013.1	AT1G19780.1	****	cyclic nucleotide gated channel 8 LENGTH=753	IPR000048 (IQ motif, EF-hand binding site), IPR005821 (Ion transport domain), IPR014710 (RmlC-like jelly roll fold)	GO:0005216 (ion channel activity), GO:0005515 (protein binding), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01679g03023.1	sp|Q9LJ44|COL12_ARATH	*-*-	Zinc finger protein CONSTANS-LIKE 12	IPR010402 (CCT domain)	GO:0005515 (protein binding)
Niben101Scf12582g01004.1	sp|Q5JK35|BGL05_ORYSJ	*-*-	Beta-glucosidase 5	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07288g09006.1	AT5G05690.1	***-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13926g00004.1	AT1G49720.2	****	abscisic acid responsive element-binding factor 1 LENGTH=403	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05158g01017.1	AT1G15550.1	*-*-	gibberellin 3-oxidase 1 LENGTH=358	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf19383g00003.1	sp|P43508|CPR4_CAEEL	--**	Cathepsin B-like cysteine proteinase 4	IPR013128 (Peptidase C1A)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01697g21001.1	AT2G35320.1	***-	EYES ABSENT homolog LENGTH=307	IPR006545 (EYA domain), IPR023214 (HAD-like domain), IPR028472 (Eyes absent family)	GO:0004725 (protein tyrosine phosphatase activity), GO:0007275 (multicellular organismal development)
Niben101Scf10476g01010.1	sp|Q10WQ5|CH10_TRIEI	-**-	10 kDa chaperonin	IPR020818 (Chaperonin Cpn10)	GO:0005737 (cytoplasm), GO:0006457 (protein folding)
Niben101Scf01068g05006.1			Unknown protein		
Niben101Scf10873g00008.1	sp|Q2T9X7|UB2E3_BOVIN	*-*-	Ubiquitin-conjugating enzyme E2 E3	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf12889g00002.1	sp|Q11J83|FABH_CHESB	****	3-oxoacyl-[acyl-carrier-protein] synthase 3	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0004315 (3-oxoacyl-[acyl-carrier-protein] synthase activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01106g02009.1			Unknown protein		
Niben101Scf01082g03010.1	sp|P10973|NLTPA_RICCO	****	Non-specific lipid-transfer protein A	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf01485g02014.1	emb|CDX90460.1|	***-	BnaA03g43210D [Brassica napus]	IPR007650 (Zf-FLZ domain)	
Niben101Scf01015g00011.1	sp|O24407|IAA16_ARATH	***-	Auxin-responsive protein IAA16	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf02929g02023.1	sp|P51131|CYBC_BRADU	*-*-	Cytochrome b/c1	IPR005798 (Cytochrome b/b6, C-terminal), IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf04675g09033.1	sp|P49043|VPE_CITSI	***-	Vacuolar-processing enzyme	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02044g06013.1	gb|KEH39474.1|	*-*-	aleurone layer morphogenesis protein [Medicago truncatula]		
Niben101Scf06407g00013.1	sp|P46291|RL38_SOLLC	***-	60S ribosomal protein L38	IPR002675 (Ribosomal protein L38e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06996g02028.1	sp|Q9AWM9|RPF2_ORYSJ	***-	Ribosome production factor 2 homolog		
Niben101Scf01922g11017.1	sp|B6ETT4|SYT2_ARATH	*-*-	Synaptotagmin-2	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01372g00003.1	sp|Q61171|PRDX2_MOUSE	****	Peroxiredoxin-2	IPR012336 (Thioredoxin-like fold)	GO:0016209 (antioxidant activity), GO:0016491 (oxidoreductase activity), GO:0051920 (peroxiredoxin activity), GO:0055114 (oxidation-reduction process)
Niben101Scf15645g02001.1	AT4G14940.1	****	amine oxidase 1 LENGTH=650	IPR000269 (Copper amine oxidase)	GO:0005507 (copper ion binding), GO:0008131 (primary amine oxidase activity), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06933g02009.1	AT1G09160.2	***-	Protein phosphatase 2C family protein LENGTH=428	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf05543g01014.1	sp|Q8H157|PTR19_ARATH	***-	Protein NRT1/ PTR FAMILY 4.6	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01422g01034.1	sp|Q6DBP8|GAT11_ARATH	****	GATA transcription factor 11	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02275g02003.1	gb|ADX66725.1|	***-	xyloglucan-specific endoglucanase inhibitor protein 2 [Solanum tuberosum]	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf07663g00009.1	sp|Q86IZ4|IPP2_DICDI	--**	Protein phosphatase inhibitor 2	IPR007062 (Protein phosphatase inhibitor 2 (IPP-2))	GO:0004864 (protein phosphatase inhibitor activity), GO:0009966 (regulation of signal transduction), GO:0043666 (regulation of phosphoprotein phosphatase activity)
Niben101Scf10086g02003.1	sp|Q94FY7|TOCC_ARATH	****	Tocopherol cyclase, chloroplastic	IPR025893 (Tocopherol cyclase)	GO:0009976 (tocopherol cyclase activity)
Niben101Scf03939g02004.1	sp|Q27GI3|NAT6_ARATH	****	Nucleobase-ascorbate transporter 6	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03953g06002.1	AT5G05690.1	***-	Cytochrome P450 superfamily protein LENGTH=472	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07089g02003.1	AT2G41600.5	****	Mitochondrial glycoprotein family protein LENGTH=220	IPR003428 (Mitochondrial glycoprotein)	GO:0005759 (mitochondrial matrix)
Niben101Scf08293g02003.1	sp|P55258|RAB8A_MOUSE	***-	Ras-related protein Rab-8A	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf15843g00003.1	sp|Q21UY4|F16A2_RHOFT	****	Fructose-1,6-bisphosphatase class 1 2	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf00116g02009.1	sp|Q69S43|CCD61_ORYSJ	***-	Cyclin-D6-1	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf04082g02024.1	sp|Q65P91|RL18_BACLD	***-	50S ribosomal protein L18	IPR005484 (Ribosomal protein L18/L5)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03983g00024.1	sp|C6A163|RS19_THESM	****	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf04841g00003.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR004332 (Transposase, MuDR, plant), IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf03908g02006.1	gb|KEH17670.1|	***-	BPS1, putative [Medicago truncatula]	IPR008511 (Protein BYPASS-related)	
Niben101Scf01918g04014.1	sp|P43177|BEV1D_BETPN	***-	Major pollen allergen Bet v 1-D/H	IPR000916 (Bet v I domain), IPR023393 (START-like domain), IPR024949 (Bet v I type allergen)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf03431g00048.1			Unknown protein		
Niben101Scf04287g09002.1	ref|WP_021018876.1|	***-	dihydroxynaphthoic acid synthetase [Vibrio gazogenes]	IPR001753 (Crotonase superfamily), IPR014748 (Crontonase, C-terminal), IPR018376 (Enoyl-CoA hydratase/isomerase, conserved site), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf12159g09021.1	sp|P33077|IAA4_ARATH	***-	Auxin-responsive protein IAA4	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf01970g00004.1	sp|F4I0N3|Y1572_ARATH	--*-	WEB family protein		
Niben101Scf02929g06056.1			Unknown protein		
Niben101Scf08918g03003.1	sp|Q9LHP4|RCH2_ARATH	*-*-	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf04869g03001.1	AT3G21070.1	****	NAD kinase 1 LENGTH=530	IPR002504 (Inorganic polyphosphate/ATP-NAD kinase)	GO:0003951 (NAD+ kinase activity), GO:0006741 (NADP biosynthetic process), GO:0008152 (metabolic process), GO:0019674 (NAD metabolic process)
Niben101Scf06467g03018.1	sp|Q7YJX8|RPOB_CALFG	*-**	DNA-directed RNA polymerase subunit beta	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf10132g01021.1	AT1G54340.1	****	isocitrate dehydrogenase LENGTH=416	IPR004790 (Isocitrate dehydrogenase NADP-dependent), IPR024084 (Isopropylmalate dehydrogenase-like domain)	GO:0004450 (isocitrate dehydrogenase (NADP+) activity), GO:0006102 (isocitrate metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf13571g00008.1	sp|P55956|ASP3_CAEEL	--**	Aspartic protease 3	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03367g01006.1	AT3G13650.1	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=186	IPR004265 (Plant disease resistance response protein)	
Niben101Scf00467g00013.1	sp|Q8LLE5|FPP_SOLLC	***-	Filament-like plant protein	IPR008587 (Filament-like plant protein)	
Niben101Scf01957g02005.1			Unknown protein		
Niben101Scf03221g01002.1	sp|P46977|STT3A_HUMAN	***-	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	IPR003674 (Oligosaccharyl transferase, STT3 subunit)	GO:0004576 (oligosaccharyl transferase activity), GO:0006486 (protein glycosylation), GO:0016020 (membrane)
Niben101Scf01413g01009.1	AT1G54890.1	***-	Late embryogenesis abundant (LEA) protein-related LENGTH=347	IPR009646 (Root cap)	
Niben101Scf03035g05011.1	sp|P23638|PSA3_YEAST	****	Proteasome subunit alpha type-3	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf05078g05003.1	sp|Q7S7Z6|PPIB_NEUCR	****	Peptidyl-prolyl cis-trans isomerase B	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf01785g10016.1	ref|XP_002521341.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF41009.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01879g01008.1	ref|NP_849739.1|	****	inactive poly [ADP-rib [Arabidopsis thaliana] gb|AEE31453.1| inactive poly [ADP-ribose] polymerase RCD1 [Arabidopsis thaliana]	IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR022003 (RST domain of plant C-terminal)	GO:0003950 (NAD+ ADP-ribosyltransferase activity)
Niben101Scf05998g03003.1	sp|O49691|ATL29_ARATH	*-*-	RING-H2 finger protein ATL29		
Niben101Scf08873g01026.1	sp|Q8GUH1|PUB33_ARATH	*-*-	U-box domain-containing protein 33	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf04773g00023.1	AT5G41470.1	***-	Nuclear transport factor 2 (NTF2) family protein LENGTH=277	IPR009959 (Polyketide cyclase SnoaL-like domain)	
Niben101Scf18096g00003.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf01711g02006.1	sp|Q5FM60|TRUA_LACAC	****	tRNA pseudouridine synthase A	IPR001406 (Pseudouridine synthase I, TruA), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf16585g02001.1	AT4G25410.1	****	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=230	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf02105g00018.1	AT1G76170.1	****	2-thiocytidine tRNA biosynthesis protein, TtcA LENGTH=332	IPR012089 (2-thiocytidine tRNA biosynthesis protein, TtcA)	GO:0008033 (tRNA processing)
Niben101Scf05118g03025.1	AT1G63000.1	***-	nucleotide-rhamnose synthase/epimerase-reductase LENGTH=301	IPR016040 (NAD(P)-binding domain), IPR029903 (RmlD-like substrate binding domain)	
Niben101Scf11325g00011.1	sp|Q9HDW7|ATC2_SCHPO	****	Calcium-transporting ATPase 2	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain), IPR024750 (Calcium-transporting P-type ATPase, N-terminal autoinhibitory domain)	GO:0000166 (nucleotide binding), GO:0005388 (calcium-transporting ATPase activity), GO:0005516 (calmodulin binding), GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding), GO:0070588 (calcium ion transmembrane transport)
Niben101Scf11184g00004.1	dbj|BAD26399.1|	****	membrane transport protein-like [Oryza sativa Japonica Group]	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf06171g02035.1	sp|Q833W9|LACC_ENTFA	--*-	Tagatose-6-phosphate kinase	IPR029056 (Ribokinase-like)	
Niben101Scf08007g01016.1	sp|Q9LXT3|MBF1B_ARATH	***-	Multiprotein-bridging factor 1b	IPR010982 (Lambda repressor-like, DNA-binding domain), IPR013729 (Multiprotein bridging factor 1, N-terminal)	GO:0003677 (DNA binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00854g05049.1			Unknown protein		
Niben101Scf12197g03009.1			Unknown protein		
Niben101Scf02949g03002.1			Unknown protein		
Niben101Scf01757g00008.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02319g03016.1	ref|XP_007012052.1|	*-*-	Rhomboid-like protein 11 isoform 1 [Theobroma cacao] gb|EOY29671.1| Rhomboid-like protein 11 isoform 1 [Theobroma cacao]		
Niben101Scf08390g02012.1	sp|P30236|HSP41_SOYBN	***-	22.0 kDa class IV heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf08814g00011.1	sp|O24160|TGA21_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg15295g00003.1	sp|Q9LXT3|MBF1B_ARATH	***-	Multiprotein-bridging factor 1b	IPR010982 (Lambda repressor-like, DNA-binding domain), IPR013729 (Multiprotein bridging factor 1, N-terminal)	GO:0003677 (DNA binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02100g00013.1	sp|Q92383|MAG1_SCHPO	*-**	DNA-3-methyladenine glycosylase 1	IPR011257 (DNA glycosylase), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair)
Niben101Scf02731g05005.1	ref|XP_007018779.1|	--*-	Mitochondrial substrate carrier family protein [Theobroma cacao] gb|EOY16004.1| Mitochondrial substrate carrier family protein [Theobroma cacao]		
Niben101Scf00633g03002.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07223g02011.1	emb|CDY18455.1|	*-*-	BnaA04g21320D [Brassica napus]		
Niben101Scf04910g01007.1	sp|P49039|SUS2_SOLTU	****	Sucrose synthase	IPR012820 (Sucrose synthase, plant/cyanobacteria)	GO:0005985 (sucrose metabolic process), GO:0009058 (biosynthetic process), GO:0016157 (sucrose synthase activity)
Niben101Scf03579g01001.1	ref|XP_007017132.1|	*-*-	Domain of Uncharacterized protein function (DUF303) [Theobroma cacao] gb|EOY14357.1| Domain of Uncharacterized protein function (DUF303) [Theobroma cacao]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf00149g02017.1	sp|B0SZ50|NUOC_CAUSK	****	NADH-quinone oxidoreductase subunit C	IPR001268 (NADH:ubiquinone oxidoreductase, 30kDa subunit), IPR010218 (NADH dehydrogenase, subunit C)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0055114 (oxidation-reduction process)
Niben101Scf23557g00013.1	sp|Q9LYK9|RS263_ARATH	***-	40S ribosomal protein S26-3	IPR000892 (Ribosomal protein S26e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04184g05003.1			Unknown protein		
Niben101Scf03341g05015.1	ref|NP_001056606.1|	***-	OsJ_19891 [Oryza sativa Japonica Group]	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf05154g01009.1	AT3G49260.3	***-	IQ-domain 21 LENGTH=472	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf00824g00002.1	sp|P12424|GLNA_NICPL	*-**	Glutamine synthetase	IPR008147 (Glutamine synthetase, beta-Grasp), IPR027302 (Glutamine synthetase, N-terminal conserved site)	GO:0004356 (glutamate-ammonia ligase activity), GO:0006542 (glutamine biosynthetic process), GO:0006807 (nitrogen compound metabolic process)
Niben101Scf04422g14001.1	emb|CDY25454.1|	***-	BnaC09g39690D [Brassica napus]		
Niben101Scf08773g00005.1	sp|A6H7C2|PEX3_BOVIN	****	Peroxisomal biogenesis factor 3	IPR006966 (Peroxin-3)	GO:0005779 (integral component of peroxisomal membrane), GO:0007031 (peroxisome organization)
Niben101Scf14973g00001.1	ref|XP_007044214.1|	*-*-	Octic , putative [Theobroma cacao]		
Niben101Scf06176g02022.1	sp|Q54M20|TTC4_DICDI	*-*-	Tetratricopeptide repeat protein 4 homolog	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf17524g00002.1	AT2G01600.1	***-	ENTH/ANTH/VHS superfamily protein LENGTH=571	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf01936g00002.1	dbj|BAD26400.1|	*-*-	transporter-like protein [Oryza sativa Japonica Group]		
Niben101Scf11836g00009.1	AT2G23070.1	****	Protein kinase superfamily protein LENGTH=432	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03432g01003.1	sp|Q52439|BPHA2_PSES1	--*-	Biphenyl dioxygenase subunit beta		
Niben101Scf02132g00011.1			Unknown protein		
Niben101Scf07140g00018.1	sp|Q94JM3|ARFB_ARATH	****	Auxin response factor 2	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf07058g00003.1	AT1G26850.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=616	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf05605g00049.1	sp|P00411|COX2_NEUCR	*-**	Cytochrome c oxidase subunit 2	IPR008972 (Cupredoxin), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0005840 (ribosome), GO:0006412 (translation), GO:0016020 (membrane)
Niben101Scf08519g03005.1	AT1G24620.1	****	EF hand calcium-binding protein family LENGTH=186	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf05621g02001.1	ref|WP_008049498.1|	****	GTP-binding protein EngC [Arthrospira sp. PCC 8005] emb|CCE15567.1| putative GTPase, EngC-like [Arthrospira sp. PCC 8005] emb|CDM94137.1| putative GTPase, EngC-like [Arthrospira sp. PCC 8005]	IPR004881 (Ribosome biogenesis GTPase RsgA, putative), IPR012340 (Nucleic acid-binding, OB-fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf04398g01005.1	AT1G32160.1	***-	Protein of unknown function (DUF760) LENGTH=406	IPR008479 (Protein of unknown function DUF760)	
Niben101Scf25108g00011.1	AT2G18500.1	*-*-	ovate family protein 7 LENGTH=315	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf01274g06004.1			Unknown protein		
Niben101Scf08926g05003.1	AT3G08600.1	***-	Protein of unknown function (DUF1191) LENGTH=316	IPR010605 (Protein of unknown function DUF1191)	
Niben101Scf06084g01016.1			Unknown protein		
Niben101Scf00022g09026.1	ref|XP_002516141.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46143.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07227g00009.1	AT3G51470.1	****	Protein phosphatase 2C family protein LENGTH=361	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf04306g02011.1	sp|Q02854|NUXM_NEUCR	-**-	NADH-ubiquinone oxidoreductase 20.9 kDa subunit	IPR019721 (NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminal)	
Niben101Scf06889g00005.1	gb|AID55065.1|	*-*-	disease resistance protein, partial [Solanum habrochaites]		
Niben101Scf02279g05002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01383g05012.1	AT3G43720.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=193	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf07382g01007.1	sp|Q06881|BCCP_NOSS1	***-	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	IPR000089 (Biotin/lipoyl attachment)	
Niben101Scf04490g00008.1	gb|ACG43350.1|	***-	SLT1 protein [Zea mays]	IPR002068 (Alpha crystallin/Hsp20 domain)	
Niben101Scf11090g00004.1	sp|Q5PPV4|CHAC2_XENLA	***-	Cation transport regulator-like protein 2	IPR006840 (ChaC-like protein), IPR013024 (Butirosin biosynthesis, BtrG-like)	
Niben101Scf02074g01018.1	ref|WP_031065496.1|	--*-	16S rRNA processing protein RimM [Streptomyces ochraceiscleroticus]		
Niben101Scf00372g02012.1	sp|Q5F457|WBP4_CHICK	*-**	WW domain-binding protein 4	IPR003604 (Zinc finger, U1-type), IPR013085 (Zinc finger, U1-C type)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf05002g03032.1	gb|KGI59268.1|	-**-	ATP/GTP-binding protein [Helicobacter sp. MIT 03-1614]		
Niben101Scf00372g00003.1	sp|P82381|ICI_LINUS	****	Proteinase inhibitor	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding)
Niben101Scf01575g00006.1	sp|Q9LTS3|CKX3_ARATH	****	Cytokinin dehydrogenase 3	IPR016164 (FAD-linked oxidase-like, C-terminal), IPR016166 (FAD-binding, type 2), IPR016170 (Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0009690 (cytokinin metabolic process), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0019139 (cytokinin dehydrogenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01818g07005.1	AT5G13390.1	***-	no exine formation 1 LENGTH=1123		
Niben101Scf01171g02008.1	sp|Q8CH62|ORAV1_MOUSE	***-	Oral cancer-overexpressed protein 1 homolog	IPR019191 (Essential protein Yae1, N-terminal)	
Niben101Scf01922g06015.1	gb|AFW68653.1|	*-*-	F-box domain containing protein [Zea mays]		
Niben101Scf02349g03002.1	sp|Q9FLC0|PER52_ARATH	****	Peroxidase 52	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00058g00011.1	ref|YP_009027264.1|	*-*-	phot A1 (chloroplast) [Glycyrrhiza glabra]		
Niben101Scf02239g06001.1	sp|Q6C9R9|SFH5_YARLI	*-*-	Phosphatidylinositol transfer protein SFH5	IPR001251 (CRAL-TRIO domain), IPR009038 (GOLD), IPR011074 (CRAL/TRIO, N-terminal domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf00206g00028.1	sp|O04373|ILL4_ARATH	****	IAA-amino acid hydrolase ILR1-like 4	IPR002933 (Peptidase M20)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01330g00002.1	sp|Q21KP0|MLTF_SACD2	--*-	Membrane-bound lytic murein transglycosylase F		
Niben101Scf00337g06006.1			Unknown protein		
Niben101Scf07883g00003.1			Unknown protein		
Niben101Scf00074g02001.1			Unknown protein		
Niben101Scf03550g00021.1	sp|Q08211|DHX9_HUMAN	*-**	ATP-dependent RNA helicase A	IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014720 (Double-stranded RNA-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding)
Niben101Scf03888g01020.1	sp|P33121|ACSL1_HUMAN	***-	Long-chain-fatty-acid--CoA ligase 1	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04007g03005.1	sp|Q2GL58|RL4_ANAPZ	***-	50S ribosomal protein L4	IPR002136 (Ribosomal protein L4/L1e), IPR023574 (Ribosomal protein L4 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf12069g00008.1	sp|A0JND3|EOGT_BOVIN	--**	EGF domain-specific O-linked N-acetylglucosamine transferase	IPR007657 (Glycosyltransferase AER61, uncharacterised)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf08341g06011.1	sp|A7SE07|NUBP2_NEMVE	*-*-	Cytosolic Fe-S cluster assembly factor NUBP2 homolog	IPR002744 (Domain of unknown function DUF59), IPR010376 (Domain of unknown function DUF971), IPR019591 (Mrp/NBP35 ATP-binding protein), IPR025669 (AAA domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf09202g01007.1	AT5G17900.1	*-*-	microfibrillar-associated protein-related LENGTH=435	IPR009730 (Micro-fibrillar-associated protein 1, C-terminal)	
Niben101Scf08341g11007.1	AT3G42725.1	***-	Putative membrane lipoprotein LENGTH=202		
Niben101Scf00711g01006.1	sp|Q92GX1|RL22_RICCN	*-**	50S ribosomal protein L22	IPR001063 (Ribosomal protein L22/L17)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf02819g07011.1	sp|Q0VQ52|MDH_ALCBS	****	Malate dehydrogenase	IPR010945 (Malate dehydrogenase, type 2)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0046554 (malate dehydrogenase (NADP+) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03577g00010.1	AT1G74120.1	****	Mitochondrial transcription termination factor family protein LENGTH=445	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06413g01002.1	sp|Q8VYM0|ERF93_ARATH	*-**	Ethylene-responsive transcription factor 15	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05523g00002.1	sp|Q8H1U4|APC5_ARATH	***-	Anaphase-promoting complex subunit 5	IPR011990 (Tetratricopeptide-like helical domain), IPR026000 (Apc5/TPR19 domain)	GO:0005515 (protein binding)
Niben101Scf06633g02010.1	ref|NP_001190535.1|	***-	protein EMBRYO DEFECTIVE 2737 [Arabidopsis thaliana] gb|AED96420.1| protein embryo defective 2737 [Arabidopsis thaliana]	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf06376g05032.1	sp|Q5RFL4|ZFYV1_PONAB	*-*-	Zinc finger FYVE domain-containing protein 1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0046872 (metal ion binding)
Niben101Scf05761g01003.1	AT3G29770.1	***-	methyl esterase 11 LENGTH=390	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07231g03006.1	sp|Q9FLJ2|NC100_ARATH	***-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00904g03011.1	AT2G37710.1	*-**	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03925g02012.1	sp|Q9SHI3|RLP2_ARATH	*-*-	Receptor-like protein 2	IPR025875 (Leucine rich repeat 4)	
Niben101Scf01694g10003.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09928g01011.1	AT2G24100.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=466		
Niben101Scf02798g02016.1			Unknown protein		
Niben101Scf03905g01016.1	sp|O93988|ACL1_SORMK	****	ATP-citrate synthase subunit 1	IPR005810 (Succinyl-CoA ligase, alpha subunit), IPR016040 (NAD(P)-binding domain), IPR016102 (Succinyl-CoA synthetase-like), IPR016141 (Citrate synthase-like, core)	GO:0003824 (catalytic activity), GO:0003878 (ATP citrate synthase activity), GO:0004775 (succinate-CoA ligase (ADP-forming) activity), GO:0008152 (metabolic process), GO:0044262 (cellular carbohydrate metabolic process), GO:0046912 (transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer)
Niben101Scf23443g00002.1	sp|Q8LDD3|CUT1D_ARATH	*-*-	Protein CURVATURE THYLAKOID 1D, chloroplastic	IPR025564 (Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain)	
Niben101Scf02819g07012.1	sp|Q2PFW9|NOVA1_MACFA	*-**	RNA-binding protein Nova-1	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf02724g00002.1	AT4G33440.1	***-	Pectin lyase-like superfamily protein LENGTH=475	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01269g01018.1	sp|Q9SZ42|FAD4_ARATH	***-	Fatty acid desaturase 4, chloroplastic	IPR019547 (B-domain containing protein Kua)	
Niben101Scf01716g00013.1	sp|Q0WMJ8|SIPL4_ARATH	*-**	Signal peptide peptidase-like 4	IPR003137 (Protease-associated domain, PA), IPR007369 (Peptidase A22B, signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf04082g03013.1	gb|ADO32622.1|	*-*-	myb family transcription factor [Arabidopsis thaliana]	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding)
Niben101Scf04362g00008.1	sp|P12311|ADH1_GEOSE	*-*-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10927g00021.1			Unknown protein		
Niben101Scf04940g01005.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf32020g00005.1	sp|Q43804|OLEO1_PRUDU	***-	Oleosin 1	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf01086g00013.1	AT4G11610.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1011	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01181g00022.1	sp|A6H7C2|PEX3_BOVIN	****	Peroxisomal biogenesis factor 3	IPR006966 (Peroxin-3)	GO:0005779 (integral component of peroxisomal membrane), GO:0007031 (peroxisome organization)
Niben101Scf18654g00002.1			Unknown protein		
Niben101Scf04407g02023.1	ref|NP_001053017.1|	-**-	[Oryza sativa Japonica Group] dbj|BAF14931.1| [Oryza sativa Japonica Group]		
Niben101Scf02831g03005.1	sp|Q9SLK6|ALA6_ARATH	****	Phospholipid-transporting ATPase 6	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf14634g01027.1	sp|Q9M1E1|PTR38_ARATH	*-*-	Protein NRT1/ PTR FAMILY 2.6	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf12069g00007.1	AT1G69380.1	***-	Protein of unknown function (DUF155) LENGTH=373	IPR003734 (Protein of unknown function DUF155)	
Niben101Scf01304g07002.1	sp|Q42093|AB2C_ARATH	***-	ABC transporter C family member 2	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf05081g00001.1	AT2G37035.1	***-	unknown protein; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=433		
Niben101Scf03098g00003.1	emb|CDY69982.1|	***-	BnaAnng32220D [Brassica napus]	IPR009902 (Protein of unknown function DUF1442), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf04040g00009.1	sp|Q9FMU5|UTP18_ARATH	*-*-	U3 small nucleolar RNA-associated protein 18 homolog		
Niben101Scf07829g03031.1	sp|Q6ZQL4|WDR43_MOUSE	***-	WD repeat-containing protein 43	IPR007148 (Small-subunit processome, Utp12), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04905g01005.1	AT1G67590.1	***-	Remorin family protein LENGTH=347	IPR005516 (Remorin, C-terminal)	
Niben101Scf03954g02013.1	AT2G01610.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=222	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf06382g01002.1	sp|Q9LN01|PPR21_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf08459g01022.1	AT1G30040.1	***-	gibberellin 2-oxidase LENGTH=341	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00961g01011.1	sp|Q8VYE5|E1312_ARATH	--*-	Glucan endo-1,3-beta-glucosidase 12	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02792g01027.1	sp|Q9FGY9|PNG1_ARATH	--*-	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase	IPR029071 (Ubiquitin-related domain)	
Niben101Scf03208g00005.1	AT1G48910.1	***-	Flavin-containing monooxygenase family protein LENGTH=383	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04323g02023.1	ref|WP_027494699.1|	--*-	fatty-acid--CoA ligase [Rhodococcus sp. JG-3]	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf08054g00002.1	gb|AGL09436.1|	--*-	glycine-rich protein, partial [Nymphaea sp. JN-2013]		
Niben101Scf02828g03023.1	ref|XP_002534792.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF27592.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03930g01015.1	sp|O80338|EF101_ARATH	*-**	Ethylene-responsive transcription factor 2	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03817g16010.1	sp|B0U833|DNAJ_METS4	***-	Chaperone protein DnaJ	IPR012724 (Chaperone DnaJ)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0009408 (response to heat), GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf00863g04001.1			Unknown protein		
Niben101Scf00043g03012.1	sp|Q9FWA3|6GPD3_ARATH	****	6-phosphogluconate dehydrogenase, decarboxylating 3	IPR006113 (6-phosphogluconate dehydrogenase, decarboxylating), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050661 (NADP binding), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11560g00015.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02709g03010.1	AT5G18750.1	*-*-	DNAJ heat shock N-terminal domain-containing protein LENGTH=884	IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf01376g04034.1	gb|AAG31013.1|	*-*-	tospovirus resistance protein A [Solanum lycopersicum]		
Niben101Scf01396g01003.1			Unknown protein		
Niben101Scf02949g15002.1	sp|P83947|PME1_FICPW	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf04044g00005.1	ref|NP_973643.1|	*-**	Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana] gb|AEC09764.1| Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]	IPR018848 (WIYLD domain)	GO:0018024 (histone-lysine N-methyltransferase activity)
Niben101Scf11261g00004.1			Unknown protein		
Niben101Scf04993g05001.1	sp|Q9M0M5|SCL13_ARATH	***-	Scarecrow-like protein 13	IPR005202 (Transcription factor GRAS), IPR030005 (Scarecrow-like protein 13)	
Niben101Scf15244g00001.1	emb|CDY11048.1|	***-	BnaA03g47070D [Brassica napus]		
Niben101Scf01497g05019.1	sp|Q5CZL1|GDAP2_XENTR	*-*-	Ganglioside-induced differentiation-associated protein 2	IPR001251 (CRAL-TRIO domain)	
Niben101Scf15958g00010.1	sp|Q41931|ACCO2_ARATH	*-*-	1-aminocyclopropane-1-carboxylate oxidase 2	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf06369g03006.1	sp|O23970|GPX1_HELAN	****	Glutathione peroxidase 1	IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029760 (Glutathione peroxidase conserved site)	GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process)
Niben101Ctg02722g00003.1	sp|O80872|TBL45_ARATH	*-*-	Protein trichome birefringence-like 45	IPR026057 (PC-Esterase)	
Niben101Scf11836g00008.1	sp|Q9SN23|LBD38_ARATH	***-	LOB domain-containing protein 38	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf23557g00012.1	emb|CDX73753.1|	***-	BnaC08g22500D [Brassica napus]		
Niben101Scf04001g03003.1	sp|P38935|SMBP2_HUMAN	*-*-	DNA-binding protein SMUBP-2		
Niben101Scf08050g00006.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf03229g01009.1	AT4G14340.1	***-	casein kinase I LENGTH=457	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04886g00001.1	sp|P16520|GBB3_HUMAN	*-**	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00352g00001.1	AT1G69570.1	****	Dof-type zinc finger DNA-binding family protein LENGTH=399	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02142g02018.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02827g07005.1	sp|P93194|RPK1_IPONI	****	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03410g00006.1	sp|P42327|ADH2_GEOSE	*-*-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01304g01002.1	sp|Q9LIC2|TMN7_ARATH	***-	Transmembrane 9 superfamily member 7	IPR004240 (Nonaspanin (TM9SF)), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane)
Niben101Scf03009g01006.1	sp|Q2Y9Y7|BIOH_NITMU	***-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01411g00009.1	sp|P46903|NATA_BACSU	*-**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR026082 (ABC transporter A, ABCA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005215 (transporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity)
Niben101Scf01757g00009.1	sp|Q9LTY6|UKL5_ARATH	*-**	Uridine kinase-like protein 5	IPR000764 (Uridine kinase like), IPR023577 (CYTH-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016301 (kinase activity)
Niben101Scf00314g01002.1			Unknown protein		
Niben101Scf05795g00005.1	AT2G44810.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=357	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf02994g04010.1	gb|KEH17101.1|	***-	peptidyl serine alpha-galactosyltransferase [Medicago truncatula]		
Niben101Scf08606g00016.1	ref|WP_027821866.1|	*-*-	cell surface protein [Lactobacillus plantarum]		
Niben101Scf03015g06004.1			Unknown protein		
Niben101Scf18066g00001.1	sp|O23090|BH014_ARATH	***-	Transcription factor bHLH14	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf06380g00001.1	AT2G30300.1	***-	Major facilitator superfamily protein LENGTH=500	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf23495g00002.1	sp|Q9FKP1|CCX1_ARATH	***-	Cation/calcium exchanger 1	IPR004837 (Sodium/calcium exchanger membrane region)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00801g04021.1	AT5G03415.1	****	Transcription factor DP LENGTH=385	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR015648 (Transcription factor DP)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005667 (transcription factor complex), GO:0006355 (regulation of transcription, DNA-templated), GO:0007049 (cell cycle)
Niben101Scf03221g02012.1	gb|AGV75925.1|	--*-	CFE protein [Gossypium barbadense]		
Niben101Scf38768g00002.1	sp|Q3C1G9|RPOC2_NICSY	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf01477g00020.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03265g00015.1	sp|Q6IV56|RN141_DANRE	--*-	RING finger protein 141	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Ctg11114g00002.1	sp|Q9C7F5|NTF2_ARATH	****	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2)	GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf02041g00001.1	sp|A8FGK6|MENE_BACP2	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00332g11005.1	sp|Q9M352|RL362_ARATH	***-	60S ribosomal protein L36-2	IPR000509 (Ribosomal protein L36e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf15286g00031.1	AT5G62720.1	***-	Integral membrane HPP family protein LENGTH=243	IPR007065 (HPP)	
Niben101Scf04969g01002.1	sp|P04105|TBAN_PHYPO	***-	Tubulin alpha-1B chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf00069g12019.1	sp|Q6Z6W2|MAD57_ORYSJ	*-*-	MADS-box transcription factor 57	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf01463g00014.1	sp|Q10Q08|RFA1B_ORYSJ	--*-	Replication protein A 70 kDa DNA-binding subunit B	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf06050g01008.1			Unknown protein		
Niben101Scf24486g00001.1			Unknown protein		
Niben101Scf07629g00002.1	sp|Q9SIU2|NCBP1_ARATH	****	Nuclear cap-binding protein subunit 1	IPR016024 (Armadillo-type fold), IPR027159 (Nuclear cap-binding protein subunit 1)	GO:0000339 (RNA cap binding), GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding), GO:0005846 (nuclear cap binding complex), GO:0016070 (RNA metabolic process), GO:0045292 (mRNA cis splicing, via spliceosome), GO:0051028 (mRNA transport)
Niben101Scf01557g07006.1	sp|Q9LJN2|MRS23_ARATH	--**	Magnesium transporter MRS2-3	IPR026573 (Magnesium transporter MRS2/LPE10)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport)
Niben101Scf05629g01020.1	sp|Q5SPX3|RN215_MOUSE	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06529g06023.1	AT1G64430.1	*-*-	Pentatricopeptide repeat (PPR) superfamily protein LENGTH=559		
Niben101Scf00257g00006.1	sp|O55012|PICAL_RAT	*-**	Phosphatidylinositol-binding clathrin assembly protein	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf08156g10001.1			Unknown protein		
Niben101Scf02571g01007.1	gb|EEQ88451.1|	***-	conserved hypothetical protein [Ajellomyces dermatitidis ER-3]		
Niben101Scf08947g02007.1	AT1G65430.1	***-	IBR domain-containing protein LENGTH=567	IPR001876 (Zinc finger, RanBP2-type), IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06276g00001.1	sp|P20965|PABPA_XENLA	*-**	Polyadenylate-binding protein 1-A	IPR009818 (Ataxin-2, C-terminal), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04184g06003.1	sp|Q9M1E7|TET3_ARATH	***-	Tetraspanin-3	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf05767g03007.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf16406g01002.1	sp|O81481|IF4E1_MAIZE	****	Eukaryotic translation initiation factor 4E-1	IPR001040 (Translation Initiation factor eIF- 4e), IPR023398 (Translation Initiation factor eIF- 4e-like  domain)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0006413 (translational initiation)
Niben101Scf03973g01004.1	sp|Q8LPL6|AP2A1_ARATH	*-*-	AP-2 complex subunit alpha-1	IPR002553 (Clathrin/coatomer adaptor, adaptin-like, N-terminal), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf03099g04006.1	AT3G28050.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=367	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01918g04013.1	AT2G05590.2	*-*-	TLD-domain containing nucleolar protein LENGTH=303	IPR006571 (TLDc domain)	
Niben101Scf06565g00007.1	sp|B3ELU3|PDXJ_CHLPB	--*-	Pyridoxine 5'-phosphate synthase		
Niben101Scf03900g00004.1	sp|Q9LKU8|PP401_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07162g03029.1			Unknown protein		
Niben101Ctg09829g00002.1	sp|Q9ZP16|CRK11_ARATH	*-**	Cysteine-rich receptor-like protein kinase 11	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02914g02040.1	sp|Q9LRB5|LHT2_ARATH	***-	Lysine histidine transporter 2	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf01221g00001.1	sp|Q38831|IAA13_ARATH	***-	Auxin-responsive protein IAA13	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf02417g06008.1	sp|Q8S9L6|CRK29_ARATH	*-**	Cysteine-rich receptor-like protein kinase 29	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04329g00013.1	AT1G59453.1	***-	B-block binding subunit of TFIIIC LENGTH=1729	IPR007309 (B-block binding subunit of TFIIIC), IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf02537g13002.1	sp|Q0JD42|PDI52_ORYSJ	*-*-	Protein disulfide isomerase-like 5-2	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf03169g00006.1	gb|ADY38784.1|	****	sequence-specific DNA-binding transcription factor [Coffea arabica]	IPR007759 (DNA-directed RNA polymerase delta subunit/Asxl), IPR009057 (Homeodomain-like), IPR018501 (DDT domain superfamily), IPR028941 (WHIM2 domain)	GO:0003677 (DNA binding), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02156g03022.1	sp|Q9KDV3|GALE_BACHD	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005886 (UDP-glucose 4-epimerase GalE), IPR025308 (UDP-glucose 4-epimerase C-terminal domain)	GO:0003824 (catalytic activity), GO:0003978 (UDP-glucose 4-epimerase activity), GO:0006012 (galactose metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf06999g01004.1	tpg|DAA62281.1|	***-	TPA: hypothetical protein ZEAMMB73_805347 [Zea mays]	IPR027850 (Protein of unknown function DUF4504)	
Niben101Scf12009g00003.1	ref|NP_001078753.1|	*-*-	ECA1 gametogenesis related family protein [Arabidopsis thaliana] gb|AED96401.1| uncharacterized protein [Arabidopsis thaliana]	IPR008502 (Prolamin-like domain)	
Niben101Scf01802g02017.1	sp|Q64092|TFE3_MOUSE	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03445g02015.1	AT5G63060.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=263	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf15120g00002.1	AT5G63310.1	****	nucleoside diphosphate kinase 2 LENGTH=231	IPR001564 (Nucleoside diphosphate kinase)	GO:0004550 (nucleoside diphosphate kinase activity), GO:0005524 (ATP binding), GO:0006165 (nucleoside diphosphate phosphorylation), GO:0006183 (GTP biosynthetic process), GO:0006228 (UTP biosynthetic process), GO:0006241 (CTP biosynthetic process)
Niben101Scf02468g03002.1	sp|B9SBU9|TPS5_RICCO	*-**	Terpene synthase 5	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf01820g00004.1	sp|Q5FVI3|LRC57_RAT	*-*-	Leucine-rich repeat-containing protein 57	IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC)	GO:0005515 (protein binding), GO:0043531 (ADP binding)
Niben101Scf03129g01010.1	sp|P0DH80|CASP1_PINTA	***-	Casparian strip membrane protein 1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf14877g00005.1	ref|XP_007026711.1|	*-*-	S-aden isoform 1 [Theobroma cacao]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf02283g00018.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02517g18009.1	gb|AIU50567.1|	***-	accelerated cell death 11, partial [Theobroma cacao]	IPR014830 (Glycolipid transfer protein domain)	GO:0005737 (cytoplasm), GO:0017089 (glycolipid transporter activity), GO:0046836 (glycolipid transport), GO:0051861 (glycolipid binding)
Niben101Scf02387g03014.1	sp|Q8LEM4|ATG8A_ARATH	*-*-	Autophagy-related protein 8a	IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain)	
Niben101Scf08581g01003.1	emb|CDY02766.1|	***-	BnaC02g11230D [Brassica napus]	IPR008546 (Domain of unknown function DUF828), IPR013666 (Pleckstrin-like, plant)	
Niben101Scf09436g01004.1	sp|Q8RWE8|GGAP1_ARATH	****	GDP-L-galactose phosphorylase 1	IPR026506 (GDP-L-galactose/GDP-D-glucose phosphorylase)	GO:0080048 (GDP-D-glucose phosphorylase activity)
Niben101Scf00612g02002.1	AT4G13540.1	*-*-	unknown protein; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=210		
Niben101Scf01980g00001.1	sp|Q69S81|PPCS1_ORYSJ	*-*-	Phosphopantothenate--cysteine ligase 1	IPR007085 (DNA/pantothenate metabolism flavoprotein, C-terminal)	
Niben101Scf09368g02010.1	sp|Q9C7T4|BH096_ARATH	***-	Transcription factor bHLH96	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01396g04005.1	sp|Q9NS40|KCNH7_HUMAN	*-**	Potassium voltage-gated channel subfamily H member 7	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR020683 (Ankyrin repeat-containing domain)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0005515 (protein binding), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf14679g00002.1	sp|F4J2Z7|SDR4_ARATH	****	Short-chain dehydrogenase reductase 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02406g01020.1	AT1G49510.1	***-	embryo defective 1273 LENGTH=240		
Niben101Scf02549g03006.1	AT1G14570.2	***-	UBX domain-containing protein LENGTH=468	IPR003903 (Ubiquitin interacting motif), IPR006577 (UAS), IPR012336 (Thioredoxin-like fold), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf00406g05012.1	AT2G39190.2	****	Protein kinase superfamily protein LENGTH=814	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01395g03002.1	AT1G30700.1	****	FAD-binding Berberine family protein LENGTH=527	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02298g06010.1	sp|Q8GX77|FB316_ARATH	***-	F-box protein		
Niben101Scf01485g02013.1	sp|Q07878|VPS13_YEAST	*-*-	Vacuolar protein sorting-associated protein 13	IPR026847 (Vacuolar protein sorting-associated protein 13), IPR026854 (Vacuolar protein sorting-associated protein 13A N-terminal domain)	
Niben101Scf03096g01002.1	AT1G05280.1	***-	Protein of unknown function (DUF604) LENGTH=461	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf10375g01007.1	sp|Q9M884|MPI1_ARATH	****	Mannose-6-phosphate isomerase 1	IPR001250 (Mannose-6-phosphate isomerase, type I)	GO:0004476 (mannose-6-phosphate isomerase activity), GO:0005975 (carbohydrate metabolic process), GO:0008270 (zinc ion binding), GO:0009298 (GDP-mannose biosynthetic process)
Niben101Scf05712g02002.1	sp|P94026|RBCMT_TOBAC	****	Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic	IPR011192 (Rubisco  LSMT methyltransferase, plant)	GO:0005515 (protein binding), GO:0009507 (chloroplast), GO:0030785 ([ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity)
Niben101Scf10431g00009.1			Unknown protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf05025g11021.1	AT3G03710.1	****	polyribonucleotide nucleotidyltransferase, putative LENGTH=922	IPR012162 (Polyribonucleotide nucleotidyltransferase), IPR027408 (PNPase/RNase PH domain)	GO:0000175 (3'-5'-exoribonuclease activity), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004654 (polyribonucleotide nucleotidyltransferase activity), GO:0006396 (RNA processing), GO:0006402 (mRNA catabolic process)
Niben101Scf02749g03007.1	sp|O52177|RELA_MYXXA	*-*-	GTP pyrophosphokinase	IPR003607 (HD/PDEase domain), IPR007685 (RelA/SpoT)	GO:0015969 (guanosine tetraphosphate metabolic process)
Niben101Scf05552g02003.1	AT5G51830.1	****	pfkB-like carbohydrate kinase family protein LENGTH=343	IPR002139 (Ribokinase), IPR029056 (Ribokinase-like)	GO:0004747 (ribokinase activity), GO:0006014 (D-ribose metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00037g02013.1	ref|XP_002532342.1|	****	nucleic acid binding protein, putative [Ricinus communis] gb|EEF30044.1| nucleic acid binding protein, putative [Ricinus communis]	IPR000467 (G-patch domain)	GO:0003676 (nucleic acid binding)
Niben101Scf03080g01008.1	sp|Q9FX85|PER10_ARATH	****	Peroxidase 10	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03150g05007.1	AT1G13270.1	****	methionine aminopeptidase 1B LENGTH=369	IPR000994 (Peptidase M24, structural domain), IPR001714 (Peptidase M24, methionine aminopeptidase)	GO:0004177 (aminopeptidase activity), GO:0006508 (proteolysis), GO:0008235 (metalloexopeptidase activity)
Niben101Scf03570g04002.1	sp|P81392|MYB06_ANTMA	*-*-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01274g03017.1	sp|Q8T135|KIF5_DICDI	*-**	Kinesin-related protein 5	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf05056g00004.1	AT1G46264.1	*-**	heat shock transcription factor B4 LENGTH=348	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf14730g00012.1	AT1G12930.1	*-*-	ARM repeat superfamily protein LENGTH=1005	IPR013598 (Exportin-1/Importin-beta-like)	
Niben101Scf06637g00015.1	sp|P21434|RK2_NICDE	*-**	50S ribosomal protein L2, chloroplastic	IPR002171 (Ribosomal protein L2), IPR008543 (Uncharacterised protein family Ycf2), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0009507 (chloroplast), GO:0015934 (large ribosomal subunit), GO:0016740 (transferase activity)
Niben101Scf12983g01027.1	sp|Q55721|FBT_SYNY3	***-	Folate-biopterin transporter	IPR004324 (Folate-biopterin transporter), IPR020846 (Major facilitator superfamily domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf02913g00030.1	gb|KEH22864.1|	--*-	DUF247 domain protein [Medicago truncatula]	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf00119g01002.1	AT2G28790.1	***-	Pathogenesis-related thaumatin superfamily protein LENGTH=249	IPR001938 (Thaumatin)	
Niben101Scf00821g16005.1	AT2G33490.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=623	IPR027267 (Arfaptin homology (AH) domain/BAR domain)	GO:0005515 (protein binding), GO:0005737 (cytoplasm)
Niben101Scf12653g00011.1	AT3G26600.1	***-	armadillo repeat only 4 LENGTH=615	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf33479g00001.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00182g03011.1	AT2G26590.1	***-	regulatory particle non-ATPase 13 LENGTH=300	IPR006773 (26S proteasome complex ubiquitin receptor, subunit Rpn13)	GO:0005634 (nucleus), GO:0005737 (cytoplasm)
Niben101Scf02068g05010.1	gb|KEH36594.1|	*-*-	transcription factor [Medicago truncatula]		
Niben101Scf05726g00001.1	sp|Q14498|RBM39_HUMAN	--**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00268g05005.1	sp|Q92JK1|RL9_RICCN	***-	50S ribosomal protein L9	IPR000244 (Ribosomal protein L9)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07648g01016.1	emb|CDY49375.1|	*-*-	BnaA03g50640D [Brassica napus]		
Niben101Scf03479g03001.1	sp|Q56XP9|ERFL1_ARATH	*-**	Ethylene-responsive transcription factor-like protein	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09203g01012.1	sp|Q8QHI3|ARL3_XENLA	***-	ADP-ribosylation factor-like protein 3	IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction)
Niben101Ctg09243g00001.1			Unknown protein		
Niben101Scf02798g00060.1	ATMG01330.1	*-*-	hypothetical protein chrM:329082-329465 REVERSE LENGTH=127		
Niben101Scf05886g02008.1	sp|P40934|CYB5_BRAOB	*-*-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf02752g12007.1	sp|P0DI42|CASP2_WHEAT	***-	Casparian strip membrane protein 2	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf10855g06007.1	AT2G27260.1	*-*-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=243	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf00448g15010.1	sp|A4SMI9|RSMF_AERS4	--**	Ribosomal RNA small subunit methyltransferase F	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf07932g00005.1	sp|Q3TPR7|T184C_MOUSE	*-*-	Transmembrane protein 184C	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184)	
Niben101Ctg11661g00001.1	sp|Q9C8H1|AB11C_ARATH	*-*-	ABC transporter C family member 11	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf01188g10003.1	gb|AAA34060.1|	*-*-	cysteine-rich extensin-like protein-2 [Nicotiana tabacum]		
Niben101Scf04664g03012.1	sp|P0AGK6|YHBY_ECO57	--**	RNA-binding protein YhbY	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf06087g06001.1	sp|Q39117|TGT2_ARATH	*-*-	Trihelix transcription factor GT-2	IPR001005 (SANT/Myb domain)	GO:0003682 (chromatin binding)
Niben101Scf04371g03001.1	sp|P42753|CCD31_ARATH	*-*-	Cyclin-D3-1	IPR013763 (Cyclin-like)	
Niben101Scf00428g12008.1	sp|P22128|RAB8_DIPOM	***-	Ras-related protein Rab-8	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00338g03006.1	sp|Q9C652|RBP1_ARATH	--**	RNA-binding protein 1	IPR001878 (Zinc finger, CCHC-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf08149g00010.1	sp|P49702|ARF5_CHICK	***-	ADP-ribosylation factor 5	IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf12318g00008.1	sp|P50899|GUXB_CELFA	--*-	Exoglucanase B		
Niben101Scf03035g00010.1	ref|XP_007043671.1|	***-	Nuclear fusion defective 6 isoform 1 [Theobroma cacao] gb|EOX99502.1| Nuclear fusion defective 6 isoform 1 [Theobroma cacao]		
Niben101Scf08308g00015.1	sp|Q9CYN2|SPCS2_MOUSE	--**	Signal peptidase complex subunit 2	IPR009582 (Signal peptidase complex subunit 2)	GO:0005787 (signal peptidase complex), GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf03309g04010.1	sp|A2WT95|PLA1_ORYSI	***-	Phospholipase A1-II 1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf29015g00007.1	sp|Q1MHJ7|Y2074_RHIL3	--*-	UPF0173 metal-dependent hydrolase RL2074		
Niben101Ctg06296g00002.1	AT2G26150.1	*-**	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf30621g00001.1	sp|Q8L799|MIOX1_ARATH	****	Inositol oxygenase 1	IPR007828 (Inositol oxygenase)	GO:0005506 (iron ion binding), GO:0005737 (cytoplasm), GO:0019310 (inositol catabolic process), GO:0050113 (inositol oxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02831g01002.1	AT5G48490.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=101	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf06909g02005.1	sp|Q9CAL2|CRK3_ARATH	*-**	Cysteine-rich receptor-like protein kinase 3	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf16706g01002.1	sp|Q9ZUG9|BH066_ARATH	*-*-	Transcription factor bHLH66	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02824g02001.1	sp|Q9SI52|P4KG7_ARATH	***-	Phosphatidylinositol 4-kinase gamma 7	IPR000403 (Phosphatidylinositol 3-/4-kinase, catalytic domain), IPR029071 (Ubiquitin-related domain)	GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00484g03003.1	ref|XP_007029107.1|	--*-	SC35-like splicing factor 33 isoform 2 [Theobroma cacao] gb|EOY09609.1| SC35-like splicing factor 33 isoform 2 [Theobroma cacao]		
Niben101Scf10753g01018.1	sp|Q7WTR3|MDTK_ERWAM	*-*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02235g04024.1	sp|A4QL94|ATPI_LEPVR	****	ATP synthase subunit a, chloroplastic	IPR000568 (ATPase, F0 complex, subunit A), IPR001865 (Ribosomal protein S2), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015935 (small ribosomal subunit), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf10189g02011.1	sp|Q2HJH0|LSM5_BOVIN	***-	U6 snRNA-associated Sm-like protein LSm5	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf02706g04026.1	sp|Q6P5M2|WDR61_DANRE	*-*-	WD repeat-containing protein 61	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR027728 (Topless family)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00596g00002.1	sp|P30584|CHSA_EMENI	--*-	Chitin synthase A		
Niben101Scf00270g04008.1	sp|Q8GYA4|CRK10_ARATH	*-**	Cysteine-rich receptor-like protein kinase 10	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00842g00004.1	sp|P48738|PIPNA_RABIT	--*-	Phosphatidylinositol transfer protein alpha isoform	IPR001666 (Phosphatidylinositol transfer protein), IPR023393 (START-like domain)	GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf08322g01006.1	sp|Q6PA14|STK4_XENLA	****	Serine/threonine-protein kinase 4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04977g01005.1	emb|CDY38369.1|	*-*-	BnaC01g09780D [Brassica napus]		
Niben101Scf00850g01025.1	sp|Q9LP45|PSD11_ARATH	***-	26S proteasome non-ATPase regulatory subunit 11 homolog	IPR000717 (Proteasome component (PCI) domain), IPR011990 (Tetratricopeptide-like helical domain), IPR013143 (PCI/PINT associated module)	GO:0005515 (protein binding)
Niben101Scf05982g01003.1	ref|XP_002872926.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH49185.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf08472g00003.1	sp|P23279|1A11_CUCPE	***-	1-aminocyclopropane-1-carboxylate synthase 1	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03491g01025.1	ref|XP_002530394.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF31964.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04350g01001.1	AT1G53040.1	*-*-	Protein of unknown function (DUF616) LENGTH=540	IPR006852 (Protein of unknown function DUF616)	
Niben101Scf03648g01012.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf01247g05007.1	AT3G47590.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=309	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00446g09001.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Ctg12810g00001.1			Unknown protein		
Niben101Scf07355g01005.1	emb|CDX94272.1|	*-*-	BnaC02g29320D [Brassica napus]		
Niben101Scf13005g03003.1	sp|Q9UU76|PUF6_SCHPO	*-*-	Pumilio homology domain family member 6	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf06442g00032.1	AT5G33320.1	***-	Glucose-6-phosphate/phosphate translocator-related LENGTH=408	IPR004696 (Triose phosphate/phosphoenolpyruvate translocator), IPR004853 (Triose-phosphate transporter domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf00820g04009.1			Unknown protein		
Niben101Scf10167g00007.1			Unknown protein		
Niben101Scf01017g05001.1	sp|Q3SWX2|ACOT9_BOVIN	***-	Acyl-coenzyme A thioesterase 9, mitochondrial	IPR029069 (HotDog domain)	
Niben101Scf01938g04004.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf13404g02005.1	AT4G39390.1	***-	nucleotide sugar transporter-KT 1 LENGTH=337	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf10855g06006.1	AT1G47330.1	*-*-	CBS domain-containing protein with a domain of unknown function (DUF21) LENGTH=527		
Niben101Scf11037g00020.1	sp|Q6NYA0|SRS1B_DANRE	***-	Serine/arginine-rich splicing factor 1B	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf16915g01013.1	sp|C7AU21|D27_ORYSJ	***-	Beta-carotene isomerase D27, chloroplastic	IPR025114 (Domain of unknown function DUF4033)	
Niben101Scf08755g04005.1	AT4G19610.1	****	nucleotide binding;nucleic acid binding;RNA binding LENGTH=816	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07437g01003.1	AT1G59840.1	***-	cofactor assembly of complex C LENGTH=297	IPR021325 (Protein of unknown function DUF2930)	
Niben101Scf01241g02013.1	sp|Q559X6|RAB2B_DICDI	*-*-	Ras-related protein Rab-2B	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf01068g05007.1	sp|Q9PTW9|PSA7_CARAU	****	Proteasome subunit alpha type-7	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf10684g00002.1	AT1G03070.1	***-	Bax inhibitor-1 family protein LENGTH=247	IPR006214 (Bax inhibitor 1-related)	
Niben101Scf01147g07004.1	sp|P55088|AQP4_MOUSE	***-	Aquaporin-4	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf09203g01013.1	AT1G62940.1	***-	acyl-CoA synthetase 5 LENGTH=542	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03202g07009.1	sp|Q8R5M3|LRC15_RAT	*-*-	Leucine-rich repeat-containing protein 15	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf12889g00003.1	sp|Q980V1|PTH_SULSO	****	Peptidyl-tRNA hydrolase	IPR002833 (Peptidyl-tRNA hydrolase, PTH2), IPR023476 (Peptidyl-tRNA hydrolase II domain)	GO:0004045 (aminoacyl-tRNA hydrolase activity)
Niben101Scf02461g04010.1	sp|B4RRY8|RLMI_ALTMD	*-**	Ribosomal RNA large subunit methyltransferase I	IPR015947 (PUA-like domain), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding)
Niben101Scf05886g02007.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02730g00019.1	AT5G14780.1	***-	formate dehydrogenase LENGTH=384	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1), IPR029753 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05730g00019.1	AT1G65800.1	****	receptor kinase 2 LENGTH=847	IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06570g04011.1	AT1G28280.1	***-	VQ motif-containing protein LENGTH=247	IPR008889 (VQ)	
Niben101Scf02451g10027.1	sp|O48818|EXPA4_ARATH	***-	Expansin-A4	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf03671g03003.1	sp|Q5BPJ0|TBL11_ARATH	***-	Protein trichome birefringence-like 11	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf15120g01003.1	sp|Q9SS98|OLEO5_ARATH	***-	Oleosin 5	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf01015g00010.1	sp|Q9NQP4|PFD4_HUMAN	****	Prefoldin subunit 4	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex), GO:0051082 (unfolded protein binding)
Niben101Scf00435g03002.1	sp|C6T1G0|CASP7_SOYBN	***-	CASP-like protein 7	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf11103g01014.1	sp|Q8BHA0|IN80C_MOUSE	*-**	INO80 complex subunit C	IPR013272 (YL1 nuclear, C-terminal), IPR029525 (INO80 complex, subunit Ies6)	GO:0006338 (chromatin remodeling), GO:0006355 (regulation of transcription, DNA-templated), GO:0031011 (Ino80 complex)
Niben101Scf14989g00022.1	sp|Q55721|FBT_SYNY3	***-	Folate-biopterin transporter	IPR004324 (Folate-biopterin transporter), IPR020846 (Major facilitator superfamily domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf09232g01002.1	sp|Q9LZW3|PUB16_ARATH	***-	U-box domain-containing protein 16	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf00089g04004.1	AT2G28510.1	****	Dof-type zinc finger DNA-binding family protein LENGTH=288	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03911g05003.1	sp|Q9FYG2|CMTA4_ARATH	****	Calmodulin-binding transcription activator 4	IPR000048 (IQ motif, EF-hand binding site), IPR005559 (CG-1 DNA-binding domain), IPR013783 (Immunoglobulin-like fold), IPR014756 (Immunoglobulin E-set), IPR020683 (Ankyrin repeat-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf07089g02016.1	ref|WP_023481429.1|	--*-	HAMP domain protein [Enterobacter cloacae] gb|ESS56428.1| HAMP domain protein [Enterobacter cloacae S611]		
Niben101Scf07712g00006.1	ref|XP_007018147.1|	***-	Folic acid and derivative biosynthetic process [Theobroma cacao] gb|EOY15372.1| Folic acid and derivative biosynthetic process [Theobroma cacao]	IPR005645 (Serine hydrolase FSH), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf08937g00003.1	emb|CDY20138.1|	***-	BnaA01g28640D [Brassica napus]		
Niben101Scf08711g01012.1	AT1G50720.1	***-	Stigma-specific Stig1 family protein LENGTH=154	IPR006969 (Stigma-specific protein Stig1)	
Niben101Scf02468g06012.1	ref|WP_015130427.1|	***-	single-stranded nucleic acid binding R3H domain-containing protein [Calothrix sp. PCC 7507] ref|YP_007067459.1| single-stranded nucleic acid binding R3H domain-containing protein [Calothrix sp. PCC 7507] gb|AFY34625.1| single-stranded nucleic acid binding R3H domain-containing protein [Calothrix sp. PCC 7507]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00400g00012.1	sp|Q9LZQ1|TBL6_ARATH	*-*-	Protein trichome birefringence-like 6	IPR025846 (PMR5 N-terminal domain), IPR029962 (Trichome birefringence-like family)	
Niben101Scf06388g01024.1	gb|AAW28576.2|	--*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf34854g00004.1	sp|Q9T070|COX6A_ARATH	****	Cytochrome c oxidase subunit 6a, mitochondrial	IPR001349 (Cytochrome c oxidase, subunit VIa)	GO:0004129 (cytochrome-c oxidase activity), GO:0005743 (mitochondrial inner membrane), GO:0005751 (mitochondrial respiratory chain complex IV)
Niben101Scf13254g00010.1	AT5G17770.1	****	NADH:cytochrome B5 reductase 1 LENGTH=281	IPR001433 (Oxidoreductase FAD/NAD(P)-binding), IPR001834 (NADH:cytochrome b5 reductase (CBR)), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04989g01014.1	sp|P53632|PAP2_YEAST	*-*-	Poly(A) RNA polymerase protein 2	IPR002058 (PAP/25A-associated), IPR002934 (Nucleotidyl transferase domain)	GO:0016779 (nucleotidyltransferase activity)
Niben101Scf03338g01014.1			Unknown protein		
Niben101Scf01370g03011.1	sp|Q9FY75|POT7_ARATH	****	Potassium transporter 7	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf05111g04001.1			Unknown protein		
Niben101Scf01171g02009.1	sp|Q4PE39|SEC23_USTMA	****	Protein transport protein SEC23	IPR002035 (von Willebrand factor, type A), IPR006896 (Sec23/Sec24, trunk domain), IPR006900 (Sec23/Sec24, helical domain), IPR012990 (Sec23/Sec24 beta-sandwich), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0006886 (intracellular protein transport), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0030127 (COPII vesicle coat)
Niben101Scf03953g06003.1	AT1G49720.2	****	abscisic acid responsive element-binding factor 1 LENGTH=403	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07068g00004.1	gb|KEH18599.1|	***-	basic helix loop helix (bHLH) family transcription factor [Medicago truncatula]	IPR025610 (Transcription factor MYC/MYB N-terminal)	
Niben101Scf07663g00008.1	sp|Q9LTJ8|MBD13_ARATH	*-**	Methyl-CpG-binding domain-containing protein 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf01847g01005.1	emb|CDX99259.1|	***-	BnaC05g33740D [Brassica napus]		
Niben101Scf03856g02003.1	AT3G12830.1	***-	SAUR-like auxin-responsive protein family LENGTH=132	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf10333g00016.1	ref|NP_001189564.1|	*-**	folic acid binding / transferase [Arabidopsis thaliana] gb|AEC07084.1| folic acid binding / transferase [Arabidopsis thaliana]	IPR022384 (Formiminotransferase subdomain)	GO:0005542 (folic acid binding), GO:0008152 (metabolic process), GO:0016740 (transferase activity)
Niben101Scf02405g05013.1	AT2G36670.1	*-*-	Eukaryotic aspartyl protease family protein LENGTH=512		
Niben101Scf01922g01006.1	emb|CDY45919.1|	***-	BnaAnng08000D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf01998g08009.1	AT5G11910.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=297	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02477g00024.1	sp|Q949Y0|UBP6_ARATH	*-**	Ubiquitin carboxyl-terminal hydrolase 6	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf06376g05031.1	sp|Q949R4|DIOXL_ARATH	*-*-	Extradiol ring-cleavage dioxygenase	IPR004183 (Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B)	GO:0006725 (cellular aromatic compound metabolic process), GO:0008198 (ferrous iron binding), GO:0016491 (oxidoreductase activity)
Niben101Scf01418g02002.1	AT5G67080.1	****	mitogen-activated protein kinase kinase kinase 19 LENGTH=344	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01249g06003.1	sp|Q9XEG7|RS3A_TORRU	***-	40S ribosomal protein S3a	IPR001593 (Ribosomal protein S3Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03985g00001.1	sp|P35134|UBC11_ARATH	*-*-	Ubiquitin-conjugating enzyme E2 11	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf00159g00005.1	sp|Q46909|YGCS_ECOLI	*-**	Inner membrane metabolite transport protein YgcS	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf08804g03022.1	sp|P0C8Q7|PP369_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05541g01012.1	sp|Q9SY33|PER7_ARATH	****	Peroxidase 7	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02053g01004.1	sp|A7MNR3|MDH_CROS8	****	Malate dehydrogenase	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf06218g03001.1	sp|Q9CPC8|Y119_PASMU	--*-	UPF0307 protein PM0119	IPR006839 (Ribosome-associated, YjgA), IPR023153 (PSPTO4464-like domain)	
Niben101Scf01848g00007.1	gb|ABF96025.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR009056 (Cytochrome c-like domain), IPR025322 (Protein of unknown function DUF4228, plant)	GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf11235g01010.1	emb|CDY43858.1|	***-	BnaC09g33850D [Brassica napus]		
Niben101Scf01349g03010.1	sp|C0QYU9|ARGB_BRAHW	****	Acetylglutamate kinase	IPR001048 (Aspartate/glutamate/uridylate kinase), IPR001057 (Glutamate/acetylglutamate kinase), IPR004662 (Acetylglutamate kinase)	GO:0003991 (acetylglutamate kinase activity), GO:0004349 (glutamate 5-kinase activity), GO:0005737 (cytoplasm), GO:0006526 (arginine biosynthetic process), GO:0006561 (proline biosynthetic process)
Niben101Scf04922g00002.1	sp|P23922.1|HBP1A_WHEAT	*-**	RecName: Full=Transcription factor HBP-1a; AltName: Full=Histone-specific transcription factor HBP1 [Triticum aestivum] pir||A41349 histone-specific transcription factor HBP1 - wheat emb|CAA40101.1| HBP-1a [Triticum aestivum] gb|AAA34293.1| DNA-binding protein [Triticum aestivum] dbj|BAA07289.1| transcription factor HBP-1a(17) [Triticum aestivum]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01204g00032.1	sp|Q9FGN8|DYAD_ARATH	*-*-	Protein DYAD		
Niben101Scf05308g00012.1	sp|Q9FL82|FB270_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf16208g01007.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf08918g03002.1	sp|P93194|RPK1_IPONI	--*-	Receptor-like protein kinase		
Niben101Scf01184g06005.1	AT1G71480.1	*-*-	Nuclear transport factor 2 (NTF2) family protein LENGTH=216	IPR009959 (Polyketide cyclase SnoaL-like domain)	
Niben101Scf00503g05009.1	sp|P22182|FGFR1_XENLA	*-*-	Fibroblast growth factor receptor 1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07907g00009.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02063g07006.1	sp|Q9LMC9|GLT2_ARATH	*-*-	Germin-like protein subfamily T member 2	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf01552g05001.1	emb|CDX93493.1|	***-	BnaA06g05550D [Brassica napus]		
Niben101Scf01289g09014.1	gb|ABA91398.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR008011 (Complex 1 LYR protein)	
Niben101Scf01687g12007.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05203g01001.1	sp|Q9CA64|PRE3_ARATH	***-	Transcription factor PRE3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf09716g02001.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC)	GO:0043531 (ADP binding)
Niben101Scf09492g00003.1	gb|ABW81177.1|	*-*-	gag non-LTR retrotransposase [Arabidopsis cebennensis]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf03000g00004.1			Unknown protein		
Niben101Scf01330g01004.1	sp|Q68F45|WIPI3_XENLA	***-	WD repeat domain phosphoinositide-interacting protein 3	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00883g13017.1	AT3G19860.2	***-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=337	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00630g05009.1			Unknown protein		
Niben101Scf03918g00029.1	AT5G28850.2	****	Calcium-binding EF-hand family protein LENGTH=536	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02156g03023.1	sp|P93472|DIM_PEA	****	Delta(24)-sterol reductase	IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08614g00004.1	sp|Q38898|AKT2_ARATH	*-*-	Potassium channel AKT2/3	IPR014710 (RmlC-like jelly roll fold), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf07165g00002.1	sp|B1XJT1|RL29_SYNP2	--*-	50S ribosomal protein L29	IPR001854 (Ribosomal protein L29)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02044g06014.1	sp|Q40519|PSBR_TOBAC	****	Photosystem II 10 kDa polypeptide, chloroplastic	IPR006814 (Photosystem II PsbR)	GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0042651 (thylakoid membrane)
Niben101Scf00154g04001.1	sp|O75129|ASTN2_HUMAN	--*-	Astrotactin-2		
Niben101Scf06407g00012.1	AT3G60830.1	***-	actin-related protein 7 LENGTH=363	IPR004000 (Actin family)	GO:0005634 (nucleus), GO:0006325 (chromatin organization), GO:0032502 (developmental process)
Niben101Scf05009g04012.1	AT5G02810.1	*-*-	pseudo-response regulator 7 LENGTH=727	IPR010402 (CCT domain), IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system), GO:0005515 (protein binding)
Niben101Scf06933g02008.1	AT3G22210.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=69		
Niben101Scf12673g01029.1	sp|P31928|SPSA_SPIOL	***-	Sucrose-phosphate synthase	IPR001296 (Glycosyl transferase, family 1), IPR006380 (Sucrose-phosphate synthase)	GO:0009058 (biosynthetic process)
Niben101Scf01166g17002.1	sp|Q82BY4|DNAJ2_STRAW	*-*-	Chaperone protein DnaJ 2	IPR001623 (DnaJ domain), IPR022226 (Protein of unknown function DUF3752)	
Niben101Scf10206g00002.1	emb|CDY60165.1|	***-	BnaAnng16590D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf00180g03008.1	AT4G00990.1	***-	Transcription factor jumonji (jmjC) domain-containing protein LENGTH=840	IPR003347 (JmjC domain)	
Niben101Scf05373g02013.1	sp|Q49UZ9|SYM_STAS1	*-**	Methionine--tRNA ligase	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR015413 (Methionyl/Leucyl tRNA synthetase)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004825 (methionine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006431 (methionyl-tRNA aminoacylation)
Niben101Scf00270g09001.1	sp|P55200|KMT2A_MOUSE	*-*-	Histone-lysine N-methyltransferase 2A	IPR000313 (PWWP domain), IPR001214 (SET domain), IPR002999 (Tudor domain), IPR003616 (Post-SET domain), IPR003888 (FY-rich, N-terminal), IPR003889 (FY-rich, C-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf04406g01005.1	dbj|BAB10527.1|	--*-	low-temperature-induced 65 kD protein [Arabidopsis thaliana]		
Niben101Scf07103g01015.1	sp|Q7H8L9|ATPB_IPOOB	*-**	ATP synthase subunit beta, chloroplastic	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR001469 (ATPase, F1 complex, delta/epsilon subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf02740g08001.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf20881g00001.1	sp|O65458|BGL03_ARATH	***-	Beta-glucosidase 3	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00712g09023.1	gb|KEH42602.1|	-**-	GRF zinc finger protein [Medicago truncatula]		
Niben101Scf22424g01001.1	ref|XP_007043350.1|	--*-	CONSTANS-like zinc finger protein, putative [Theobroma cacao] gb|EOX99181.1| CONSTANS-like zinc finger protein, putative [Theobroma cacao]		
Niben101Scf02908g06009.1	AT4G31170.1	*-**	Protein kinase superfamily protein LENGTH=412	IPR002912 (ACT domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08814g00012.1	AT1G10210.1	****	mitogen-activated protein kinase 1 LENGTH=370	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf17839g01005.1	sp|P29162|ASOL_TOBAC	***-	L-ascorbate oxidase homolog	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04292g03017.1	AT5G05365.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=77	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf04109g10011.1	gb|AAG51783.1|AC079679_3	--*-	reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]		
Niben101Scf01330g02004.1	AT2G45180.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=134	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00444g01009.1	sp|Q9LZ60|SMR3_ARATH	--*-	Cyclin-dependent protein kinase inhibitor SMR3		
Niben101Ctg15065g00001.1	AT4G14780.1	****	Protein kinase superfamily protein LENGTH=364	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04422g02001.1			Unknown protein		
Niben101Scf01102g04002.1	ref|WP_031207004.1|	*-*-	methyltransferase [Mannheimia haemolytica]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf23632g00002.1			Unknown protein		
Niben101Scf08597g01023.1	sp|Q9SXS8|ERF3_TOBAC	****	Ethylene-responsive transcription factor 3	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07790g01023.1	sp|Q9S9T7|VP282_ARATH	***-	Vacuolar protein sorting-associated protein 28 homolog 2	IPR007143 (Vacuolar protein sorting-associated, VPS28)	
Niben101Scf03914g01010.1	AT2G27820.1	*-**	prephenate dehydratase 1 LENGTH=424	IPR001086 (Prephenate dehydratase), IPR002912 (ACT domain)	GO:0004664 (prephenate dehydratase activity), GO:0008152 (metabolic process), GO:0009094 (L-phenylalanine biosynthetic process), GO:0016597 (amino acid binding)
Niben101Scf02688g06010.1	sp|B1L712|RS10_KORCO	****	30S ribosomal protein S10	IPR001848 (Ribosomal protein S10), IPR027486 (Ribosomal protein S10 domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf01172g10002.1	emb|CDY54169.1|	***-	BnaC07g48590D [Brassica napus]		
Niben101Scf05605g00048.1	sp|Q2GFB2|ATP6_EHRCR	*-**	ATP synthase subunit a	IPR000568 (ATPase, F0 complex, subunit A)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf09442g00001.1	AT1G62940.1	***-	acyl-CoA synthetase 5 LENGTH=542	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf06975g00006.1	AT4G35730.1	*-*-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=466	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf03686g01011.1	sp|Q01440|GTR1_LEIDO	--**	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf05110g00001.1	sp|Q9S7L9|CX6B1_ARATH	*-**	Cytochrome c oxidase subunit 6b-1	IPR003213 (Cytochrome c oxidase, subunit VIb)	GO:0004129 (cytochrome-c oxidase activity), GO:0005739 (mitochondrion)
Niben101Scf02736g01008.1	sp|Q0ZJ13|ATPB_VITVI	*-**	ATP synthase subunit beta, chloroplastic	IPR005722 (ATPase, F1 complex, beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Scf01225g04038.1	ref|XP_007037494.1|	***-	Myosin heavy chain-related, putative isoform 1 [Theobroma cacao] gb|EOY21995.1| Myosin heavy chain-related, putative isoform 1 [Theobroma cacao]		
Niben101Scf02752g05009.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05025g07010.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01997g01017.1	gb|KEH16916.1|	*-*-	disease resistance protein (CC-NBS-LRR class) family protein [Medicago truncatula]		
Niben101Scf02929g02022.1	gb|AFI44273.1|	****	rib L5 (mitochondrion) [Silene vulgaris]	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf11108g00002.1	sp|Q2JN82|PSBX_SYNJB	--**	Photosystem II reaction center X protein	IPR009518 (Photosystem II PsbX)	GO:0009523 (photosystem II), GO:0015979 (photosynthesis), GO:0016020 (membrane)
Niben101Scf16585g02002.1	gb|KEH38557.1|	****	integral membrane family protein [Medicago truncatula]	IPR002794 (Protein of unknown function DUF92, TMEM19)	GO:0016021 (integral component of membrane)
Niben101Scf04716g00008.1	ref|XP_003078177.1|	****	Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis (ISS) [Ostreococcus tauri] emb|CAL52917.1| Peptidase S54, rhomboid domain [Ostreococcus tauri]	IPR002610 (Peptidase S54, rhomboid)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf19386g00002.1	AT1G80490.2	***-	TOPLESS-related 1 LENGTH=1120	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR027728 (Topless family)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf15373g00007.1	emb|CDY30736.1|	***-	BnaA02g33580D [Brassica napus]		
Niben101Ctg13410g00002.1	sp|Q8GUQ8|XDH1_ARATH	*-*-	Xanthine dehydrogenase 1	IPR008274 (Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04607g02002.1			Unknown protein		
Niben101Scf00146g00010.1	gb|EQB54220.1|	*-**	base excision DNA repair protein [Colletotrichum gloeosporioides Cg-14]	IPR011257 (DNA glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair)
Niben101Scf01818g07004.1	sp|Q9M2F1|RS272_ARATH	***-	40S ribosomal protein S27-2	IPR000592 (Ribosomal protein S27e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03302g03005.1	sp|Q9M658|MOM1_ARATH	*-*-	Helicase protein MOM1		
Niben101Scf00049g00001.1	sp|O74874|CCR4_SCHPO	***-	Glucose-repressible alcohol dehydrogenase transcriptional effector	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf01520g02007.1	sp|Q89EG9|AQPZ_BRADU	***-	Aquaporin Z	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00416g02005.1	sp|Q6GPJ5|LRC40_XENLA	*-*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf06171g02034.1	AT4G36520.1	*-*-	Chaperone DnaJ-domain superfamily protein LENGTH=1422	IPR001623 (DnaJ domain)	
Niben101Scf02563g04003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02349g03003.1	sp|A7NY33|PER4_VITVI	****	Peroxidase 4	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01964g00004.1	sp|Q8H6B1|SPT16_MAIZE	***-	FACT complex subunit SPT16	IPR000994 (Peptidase M24, structural domain), IPR013719 (Domain of unknown function DUF1747), IPR013953 (FACT complex subunit Spt16p/Cdc68p), IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	
Niben101Scf07223g02010.1	AT3G12620.1	****	Protein phosphatase 2C family protein LENGTH=385	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf03251g00016.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10630g02001.1	AT3G14270.1	*-*-	phosphatidylinositol-4-phosphate 5-kinase family protein LENGTH=1791	IPR002423 (Chaperonin Cpn60/TCP-1), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027409 (GroEL-like apical domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process), GO:0046872 (metal ion binding)
Niben101Scf06662g01002.1	sp|Q42430|ZFP1_WHEAT	--*-	Zinc finger protein 1	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf03341g05016.1	AT5G59410.1	***-	Rab5-interacting family protein LENGTH=130	IPR029008 (Rab5-interacting protein family)	
Niben101Scf08308g03003.1	AT1G71720.1	****	Nucleic acid-binding proteins superfamily LENGTH=500	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding)
Niben101Scf06413g01001.1	sp|Q8VYM0|ERF93_ARATH	*-**	Ethylene-responsive transcription factor 15	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00711g01005.1	gb|KEH42201.1|	--*-	SAUR-like auxin-responsive family protein [Medicago truncatula]		
Niben101Scf02240g05005.1	AT1G02205.3	***-	Fatty acid hydroxylase superfamily LENGTH=630	IPR021940 (Uncharacterised domain Wax2, C-terminal)	
Niben101Scf07089g02002.1	AT2G29710.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=467	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf08293g02002.1	sp|B6I2D2|MSRA_ECOSE	*-**	Peptide methionine sulfoxide reductase MsrA	IPR002569 (Peptide methionine sulphoxide reductase MsrA), IPR028427 (Peptide methionine sulfoxide reductase)	GO:0006979 (response to oxidative stress), GO:0008113 (peptide-methionine (S)-S-oxide reductase activity), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0030091 (protein repair), GO:0055114 (oxidation-reduction process)
Niben101Scf03203g08006.1	AT3G07470.1	***-	Protein of unknown function, DUF538 LENGTH=169	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf07058g00004.1	sp|Q9SWI1|PKS1_ARATH	***-	Protein PHYTOCHROME KINASE SUBSTRATE 1		
Niben101Scf00811g09001.1	sp|P56902|FABF_RHIME	***-	3-oxoacyl-[acyl-carrier-protein] synthase 2	IPR017568 (3-oxoacyl-[acyl-carrier-protein] synthase 2), IPR020841 (Polyketide synthase, beta-ketoacyl synthase domain)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf08552g00007.1	sp|B2S546|NUOD_BRUA1	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04869g03002.1	sp|P23433|E13D_TOBAC	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01372g09016.1	sp|A3LZZ0|H2A1_PICST	***-	Histone H2A.1	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf21107g00015.1	sp|Q9LTT8|VCS_ARATH	***-	Enhancer of mRNA-decapping protein 4	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00069g03001.1	sp|Q9T072|BH025_ARATH	***-	Transcription factor bHLH25	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00160g01001.1	sp|O65740|DEF2_CAPAN	--*-	Defensin J1-2	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf01083g00016.1	emb|CDY38061.1|	--*-	BnaCnng09220D [Brassica napus]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf02046g01001.1	ref|XP_007018039.1|	****	Hedgehog receptor, putative isoform 1 [Theobroma cacao] gb|EOY15264.1| Hedgehog receptor, putative isoform 1 [Theobroma cacao]	IPR003392 (Patched)	GO:0008158 (hedgehog receptor activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030301 (cholesterol transport)
Niben101Scf08519g03006.1	sp|Q6GK28|ESAA_STAAR	--*-	Protein EsaA		
Niben101Scf07728g01019.1	sp|O23337|PP311_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf17976g00002.1	sp|Q9FM96|PSL4_ARATH	*-*-	Glucosidase 2 subunit beta	IPR002172 (Low-density lipoprotein (LDL) receptor class A repeat), IPR028146 (Glucosidase II beta subunit, N-terminal)	GO:0005515 (protein binding)
Niben101Scf04887g00007.1	gb|AAB71969.1|	--*-	Highly similar to auxin-induced protein (aldo/keto reductase family) [Arabidopsis thaliana]		
Niben101Scf03572g00002.1	sp|Q10M00|C3H22_ORYSJ	***-	Zinc finger CCCH domain-containing protein 22	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf12369g00003.1	gb|KEH29621.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf06889g00006.1	gb|AID55065.1|	*-*-	disease resistance protein, partial [Solanum habrochaites]	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf01879g01009.1	sp|Q9M3V8|RS6_ASPOF	***-	40S ribosomal protein S6	IPR001377 (Ribosomal protein S6e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00108g02006.1	AT5G56840.1	*-*-	myb-like transcription factor family protein LENGTH=233	IPR001878 (Zinc finger, CCHC-type), IPR009057 (Homeodomain-like)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0008270 (zinc ion binding)
Niben101Scf07539g00002.1	ref|XP_002522008.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF40412.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00372g02011.1	ref|XP_002313839.2|	***-	Calmodulin-binding family protein [Populus trichocarpa] gb|EEE87794.2| Calmodulin-binding family protein [Populus trichocarpa]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf11995g00008.1	sp|Q7L1T6|NB5R4_HUMAN	*-*-	Cytochrome b5 reductase 4	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf01739g08026.1	gb|KEH31416.1|	***-	polygalacturonase QRT3-like protein [Medicago truncatula]	IPR011050 (Pectin lyase fold/virulence factor)	
Niben101Scf01033g00006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf15817g01013.1	AT3G49725.1	****	GTP-binding protein, HflX LENGTH=620	IPR016496 (GTPase HflX), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf04773g00022.1	sp|Q99439|CNN2_HUMAN	--*-	Calponin-2	IPR001715 (Calponin homology domain)	GO:0005515 (protein binding)
Niben101Scf01887g08010.1	sp|P19182|IFRD1_MOUSE	--*-	Interferon-related developmental regulator 1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf06888g02018.1	sp|Q8W0Z6|AP5M_ARATH	****	AP-5 complex subunit mu	IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf32453g00005.1	sp|O04066|ACBP_RICCO	****	Acyl-CoA-binding protein	IPR014352 (FERM/acyl-CoA-binding protein, 3-helical bundle)	GO:0000062 (fatty-acyl-CoA binding)
Niben101Scf02547g02002.1			Unknown protein		
Niben101Scf04570g04008.1			Unknown protein		
Niben101Scf01308g03004.1	sp|Q9TL08|CHLI_NEPOL	*-*-	Magnesium-chelatase subunit ChlI	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf11891g00007.1	sp|F4IRQ5|THG1_ARATH	****	tRNA(His) guanylyltransferase 1	IPR007537 (tRNAHis guanylyltransferase Thg1), IPR024956 (tRNAHis guanylyltransferase catalytic domain), IPR025845 (Thg1 C-terminal domain)	GO:0000287 (magnesium ion binding), GO:0006400 (tRNA modification), GO:0008193 (tRNA guanylyltransferase activity)
Niben101Scf04375g05005.1	sp|C1DRH0|ACP_AZOVD	***-	Acyl carrier protein	IPR003231 (Acyl carrier protein (ACP)), IPR009081 (Acyl carrier protein-like)	GO:0006633 (fatty acid biosynthetic process)
Niben101Scf11245g03002.1	sp|Q1PE51|QWRF7_ARATH	***-	QWRF motif-containing protein 7	IPR007573 (Protein of unknown function DUF566)	
Niben101Scf02507g00004.1	dbj|BAB02370.1|	***-	leucine-rich repeat protein;	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf00082g06011.1	sp|Q9MA55|ACBP4_ARATH	*-**	Acyl-CoA-binding domain-containing protein 4	IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf18668g00001.1	gb|AHX81351.1|	*-*-	cytochrome c biogenesis FN (mitochondrion) [Licania heteromorpha]		
Niben101Ctg10016g00001.1	ref|XP_002527723.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF34636.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00369g03033.1	ref|XP_002512418.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF49870.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00812g03002.1	sp|Q0IH40|DNLZ_XENLA	*-**	DNL-type zinc finger protein	IPR007853 (Zinc finger, DNL-type), IPR024158 (Mitochondrial import protein TIM15)	GO:0008270 (zinc ion binding)
Niben101Scf05322g00002.1	sp|Q9FLP6|SUMO2_ARATH	***-	Small ubiquitin-related modifier 2	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf04899g01009.1	sp|Q6NQH4|TAF13_ARATH	****	Transcription initiation factor TFIID subunit 13	IPR003195 (Transcription initiation factor IID, 18kDa subunit)	GO:0006366 (transcription from RNA polymerase II promoter), GO:0046982 (protein heterodimerization activity)
Niben101Scf02460g05005.1	gb|ABN08700.1|	*-*-	Endonuclease/exonuclease/phosphatase [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf01213g00001.1	ref|XP_002519907.1|	*-*-	mixed-lineage leukemia protein, mll, putative [Ricinus communis] gb|EEF42511.1| mixed-lineage leukemia protein, mll, putative [Ricinus communis]		
Niben101Scf13679g00013.1	sp|O43001|SYJ1_SCHPO	*-**	Inositol-1,4,5-trisphosphate 5-phosphatase 1	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf03550g00022.1	AT3G18200.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=360	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf04283g03011.1	sp|Q3ZC10|SMD1_BOVIN	***-	Small nuclear ribonucleoprotein Sm D1	IPR010920 (Like-Sm (LSM) domain), IPR027141 (U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3)	
Niben101Scf06408g00005.1	sp|Q76NT9|ACCO1_DICDI	*-*-	1-aminocyclopropane-1-carboxylate oxidase	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf03888g01021.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01619g00021.1	sp|B4U7U4|FTSH_HYDS0	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01091g00041.1	AT5G14780.1	***-	formate dehydrogenase LENGTH=384	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1), IPR029753 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05272g02010.1	AT3G45610.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=245	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08773g00006.1	sp|Q949S9|SPF27_ARATH	****	Pre-mRNA-splicing factor SPF27 homolog	IPR008409 (Pre-mRNA-splicing factor SPF27)	GO:0006397 (mRNA processing)
Niben101Scf03584g06024.1	sp|Q6AWY6|GRF3_ORYSJ	***-	Growth-regulating factor 3	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf11310g00010.1	sp|Q8NJS1|ATG26_LEPMC	*-*-	Sterol 3-beta-glucosyltransferase	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase), IPR004276 (Glycosyltransferase family 28, N-terminal domain)	GO:0005975 (carbohydrate metabolic process), GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups), GO:0030259 (lipid glycosylation)
Niben101Scf02564g12002.1	AT5G49650.1	***-	xylulose kinase-2 LENGTH=558	IPR018484 (Carbohydrate kinase, FGGY, N-terminal), IPR018485 (Carbohydrate kinase, FGGY, C-terminal)	GO:0005975 (carbohydrate metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00168g10031.1	sp|Q9SYL0|BT3_ARATH	***-	BTB/POZ and TAZ domain-containing protein 3	IPR000197 (Zinc finger, TAZ-type), IPR011333 (BTB/POZ fold)	GO:0003712 (transcription cofactor activity), GO:0004402 (histone acetyltransferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf04362g00009.1	sp|O13936|SPT5_SCHPO	*-**	Transcription elongation factor spt5	IPR005100 (Transcription elongation factor Spt5, NGN domain), IPR005824 (KOW), IPR006645 (NusG, N-terminal)	GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05002g03033.1			Unknown protein		
Niben101Scf02174g01018.1	sp|Q71N54|LCAT4_ARATH	****	Lecithin-cholesterol acyltransferase-like 4	IPR003386 (Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0008374 (O-acyltransferase activity)
Niben101Scf11585g00003.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02798g02015.1	sp|P46903|NATA_BACSU	--**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf37330g00001.1	sp|Q06GR0|PSAA_PIPCE	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf03206g00006.1	sp|Q8GW29|LOG7_ARATH	***-	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf06761g02003.1	gb|KEH37887.1|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf13387g00025.1	sp|P69103|GBLP_TRYBB	*-**	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf12373g01013.1	sp|Q5NAI4|PLA5_ORYSJ	***-	Phospholipase A1-II 5	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf05415g01003.1	sp|A6H779|FBXL2_BOVIN	*-*-	F-box/LRR-repeat protein 2	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf39332g00017.1	sp|P47990|XDH_CHICK	****	Xanthine dehydrogenase/oxidase	IPR000674 (Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead), IPR002888 ([2Fe-2S]-binding), IPR005107 (CO dehydrogenase flavoprotein, C-terminal), IPR008274 (Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding), IPR012675 (Beta-grasp domain), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0009055 (electron carrier activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0046872 (metal ion binding), GO:0050660 (flavin adenine dinucleotide binding), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00430g02009.1	sp|Q38899|ORC2_ARATH	****	Origin recognition complex subunit 2	IPR007220 (Origin recognition complex, subunit 2)	GO:0000808 (origin recognition complex), GO:0005634 (nucleus), GO:0006260 (DNA replication)
Niben101Scf08341g11005.1	emb|CDY42275.1|	***-	BnaC02g08810D [Brassica napus]		
Niben101Scf01394g01014.1	ref|XP_007015765.1|	*-*-	Mitochondrial fission protein [Theobroma cacao] gb|EOY33384.1| Mitochondrial fission protein [Theobroma cacao]		
Niben101Scf11738g00009.1	sp|P42749|UBC5_ARATH	***-	Ubiquitin-conjugating enzyme E2 5	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf04040g00008.1	gb|AFI44275.1|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Silene vulgaris]		
Niben101Scf03963g01003.1	sp|P93231|VPS41_SOLLC	***-	Vacuolar protein sorting-associated protein 41 homolog	IPR011990 (Tetratricopeptide-like helical domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR016902 (Vacuolar protein sorting-associated protein 41)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport)
Niben101Scf05469g02008.1	AT2G31010.1	*-**	Protein kinase superfamily protein LENGTH=775	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02929g06090.1			Unknown protein		
Niben101Scf00723g00006.1	sp|Q9M2Z5|FBL53_ARATH	***-	F-box/LRR-repeat protein		
Niben101Scf03971g01009.1	AT5G06050.1	*-**	Putative methyltransferase family protein LENGTH=682	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf03584g03007.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf01777g00016.1	AT1G43710.1	****	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein LENGTH=482	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03600g04033.1	sp|Q99PL6|UBXN6_MOUSE	*-*-	UBX domain-containing protein 6	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf03021g00005.1	sp|Q9S9N9|CCR1_ARATH	***-	Cinnamoyl-CoA reductase 1	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf00338g03005.1	sp|Q0WLC7|Y5053_ARATH	***-	CBS domain-containing protein CBSCBSPB4	IPR000270 (Phox/Bem1p), IPR000644 (CBS domain)	GO:0005515 (protein binding)
Niben101Scf09559g00002.1			Unknown protein		
Niben101Scf00504g06015.1	ref|XP_007043499.1|	***-	Micronuclear linker histone polyprotein-like protein [Theobroma cacao] gb|EOX99330.1| Micronuclear linker histone polyprotein-like protein [Theobroma cacao]		
Niben101Scf05203g05027.1	sp|Q9M3G7|ATM_ARATH	*-*-	Serine/threonine-protein kinase ATM	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf39137g00001.1	sp|Q93YX4|APRL5_ARATH	***-	5'-adenylylsulfate reductase-like 5	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf01568g01016.1	sp|Q5XG71|UTP20_MOUSE	*-*-	Small subunit processome component 20 homolog	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04114g00040.1			Unknown protein		
Niben101Scf00966g01008.1	sp|Q9LXG0|ZHD8_ARATH	***-	Zinc-finger homeodomain protein 8	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf06529g03013.1	AT4G10930.1	***-	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=984		
Niben101Scf11560g00016.1	sp|Q9SZT4|CSCLE_ARATH	***-	CSC1-like protein	IPR003864 (Domain of unknown function DUF221)	GO:0016020 (membrane)
Niben101Scf01684g01001.1	sp|A6L089|ISPG_BACV8	--*-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase		
Niben101Scf06909g02004.1	sp|Q2RU33|NUOH_RHORT	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf06556g10007.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf14814g00003.1	AT3G51510.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). LENGTH=181		
Niben101Scf03671g00014.1	sp|Q5QYF8|RHLB_IDILO	****	ATP-dependent RNA helicase RhlB	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf04706g01026.1	sp|Q9US60|KLP3_SCHPO	*-**	Kinesin-like protein 3	IPR001752 (Kinesin motor domain), IPR009057 (Homeodomain-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003677 (DNA binding), GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding), GO:0009904 (chloroplast accumulation movement)
Niben101Scf00218g03013.1	sp|Q9FG16|PP367_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf01818g04018.1	sp|Q2QY07|CCDA2_ORYSJ	*-**	Cytochrome c-type biogenesis ccda-like chloroplastic protein 2	IPR003834 (Cytochrome c assembly protein, transmembrane domain)	GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0055114 (oxidation-reduction process)
Niben101Scf05584g01007.1	sp|O81829|GH35_ARATH	***-	Indole-3-acetic acid-amido synthetase GH3.5	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf06050g01007.1	sp|B6J089|UNG_COXB2	*-**	Uracil-DNA glycosylase	IPR002043 (Uracil-DNA glycosylase), IPR005122 (Uracil-DNA glycosylase-like)	GO:0004844 (uracil DNA N-glycosylase activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0016799 (hydrolase activity, hydrolyzing N-glycosyl compounds)
Niben101Scf07953g02009.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf02114g01004.1	ref|XP_007045551.1|	*-*-	S-aden , putative [Theobroma cacao]	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf04071g03008.1			Unknown protein		
Niben101Scf06369g03007.1	AT1G63470.1	*-*-	AT hook motif DNA-binding family protein LENGTH=378	IPR005175 (Domain of unknown function DUF296), IPR020478 (AT hook-like)	
Niben101Scf01721g00010.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03733g01008.1	sp|Q8W206|CSN6A_ARATH	*-*-	COP9 signalosome complex subunit 6a	IPR024969 (Rpn11/EIF3F C-terminal domain)	
Niben101Scf03021g01005.1	sp|Q9JPD1|UBIE_RUBGI	--**	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02915g03005.1			Unknown protein	IPR006031 (XYPPX repeat), IPR028144 (Cysteine-rich transmembrane CYSTM domain)	
Niben101Scf01051g04001.1	sp|Q14498|RBM39_HUMAN	*-**	RNA-binding protein 39	IPR001202 (WW domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf02048g00001.1	AT5G48150.1	***-	GRAS family transcription factor LENGTH=490	IPR005202 (Transcription factor GRAS), IPR030005 (Scarecrow-like protein 13)	
Niben101Scf03491g01026.1			Unknown protein		
Niben101Scf08982g00003.1	AT4G00340.1	****	receptor-like protein kinase 4 LENGTH=818	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR002528 (Multi antimicrobial extrusion protein), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen), GO:0055085 (transmembrane transport)
Niben101Scf03229g01008.1	sp|Q9T043|RL142_ARATH	***-	60S ribosomal protein L14-2	IPR002784 (Ribosomal protein L14), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00904g03012.1	sp|Q8VXF2|LEC_LENCT	***-	Lectin	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0030246 (carbohydrate binding)
Niben101Scf15109g00018.1	sp|Q948T6|LGUL_ORYSJ	****	Lactoylglutathione lyase	IPR004361 (Glyoxalase I), IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	GO:0004462 (lactoylglutathione lyase activity), GO:0046872 (metal ion binding)
Niben101Scf08050g00007.1	ref|NP_197537.1|	--*-	serine-rich protein-like protein [Arabidopsis thaliana] gb|AED92836.1| serine-rich protein-like protein [Arabidopsis thaliana]		
Niben101Scf08441g00001.1			Unknown protein		
Niben101Scf06059g00003.1	sp|P46897|ATHB7_ARATH	--*-	Homeobox-leucine zipper protein ATHB-7		
Niben101Scf38415g00001.1	AT4G22120.1	***-	ERD (early-responsive to dehydration stress) family protein LENGTH=771	IPR003864 (Domain of unknown function DUF221), IPR027815 (Domain of unknown function DUF4463)	GO:0016020 (membrane)
Niben101Scf04407g02024.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05767g03006.1	sp|P42059|CLAH7_DAVTA	--*-	Minor allergen Cla h 7		
Niben101Scf04184g06002.1	sp|P48738|PIPNA_RABIT	***-	Phosphatidylinositol transfer protein alpha isoform	IPR001666 (Phosphatidylinositol transfer protein), IPR023393 (START-like domain)	GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf00406g03001.1	sp|P12360|CB11_SOLLC	***-	Chlorophyll a-b binding protein 6A, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf01494g07004.1			Unknown protein		
Niben101Scf07739g00010.1	sp|P46510|CAHX_FLABI	***-	Carbonic anhydrase	IPR001765 (Carbonic anhydrase)	GO:0004089 (carbonate dehydratase activity), GO:0008270 (zinc ion binding), GO:0015976 (carbon utilization)
Niben101Scf07720g00007.1	sp|Q9SYA6|RPBAL_ARATH	****	DNA-directed RNA polymerase subunit 10-like protein	IPR000268 (DNA-directed RNA polymerase, subunit N/Rpb10), IPR009057 (Homeodomain-like), IPR023580 (RNA polymerase subunit RPB10)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf01124g24012.1	sp|P10582|DPOM_MAIZE	*-**	DNA polymerase	IPR004868 (DNA-directed DNA polymerase, family B, mitochondria/virus)	GO:0000166 (nucleotide binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf00612g02003.1	sp|Q8RWF0|PS13A_ARATH	***-	26S proteasome non-ATPase regulatory subunit 13 homolog A	IPR000717 (Proteasome component (PCI) domain)	GO:0005515 (protein binding)
Niben101Scf05102g00004.1	sp|P52855|RLA1_MAIZE	***-	60S acidic ribosomal protein P1	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf00494g08015.1	sp|Q9ZPS7|TMN3_ARATH	***-	Transmembrane 9 superfamily member 3	IPR004240 (Nonaspanin (TM9SF)), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane)
Niben101Scf08459g01021.1	sp|Q9XHL7|TCTP_TOBAC	***-	Translationally-controlled tumor protein homolog	IPR018105 (Translationally controlled tumour protein)	
Niben101Scf23811g00002.1	ref|NP_001047002.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf03595g19032.1	AT3G18630.1	****	uracil dna glycosylase LENGTH=330	IPR002043 (Uracil-DNA glycosylase), IPR005122 (Uracil-DNA glycosylase-like)	GO:0004844 (uracil DNA N-glycosylase activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0016799 (hydrolase activity, hydrolyzing N-glycosyl compounds)
Niben101Scf00647g02002.1	gb|KEH21046.1|	***-	myosin heavy chain-like protein [Medicago truncatula]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf05385g02008.1	sp|Q0IQU1|LAC22_ORYSJ	***-	Laccase-22	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03265g00016.1	sp|P28002|COMT1_MEDSA	*-**	Caffeic acid 3-O-methyltransferase	IPR016461 (O-methyltransferase COMT-type)	GO:0008168 (methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf01936g00001.1	dbj|BAD26400.1|	*-*-	transporter-like protein [Oryza sativa Japonica Group]		
Niben101Scf19180g00004.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf16585g02003.1	sp|Q9SYM2|BBX22_ARATH	****	B-box zinc finger protein 22	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf05133g06011.1	sp|Q9NS86|LANC2_HUMAN	***-	LanC-like protein 2	IPR007822 (Lanthionine synthetase C-like), IPR012341 (Six-hairpin glycosidase)	GO:0003824 (catalytic activity)
Niben101Scf01395g03001.1	sp|A3LV40|DBP9_PICST	****	ATP-dependent RNA helicase DBP9	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf12228g00002.1	gb|AAG31017.1|	*-*-	tospovirus resistance protein E [Solanum lycopersicum]		
Niben101Scf04895g00010.1	sp|Q4R7U8|ASGL1_MACFA	*-*-	Isoaspartyl peptidase/L-asparaginase	IPR000246 (Peptidase T2, asparaginase 2), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0016787 (hydrolase activity)
Niben101Ctg03037g00002.1	sp|Q9LHZ7|CSLD2_ORYSJ	*-**	Cellulose synthase-like protein D2	IPR005150 (Cellulose synthase)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf10970g00010.1			Unknown protein		
Niben101Scf35368g00001.1			Unknown protein		
Niben101Scf02240g02008.1	sp|O04066|ACBP_RICCO	****	Acyl-CoA-binding protein	IPR014352 (FERM/acyl-CoA-binding protein, 3-helical bundle)	GO:0000062 (fatty-acyl-CoA binding)
Niben101Scf02853g02003.1	sp|Q94K71|GPPL2_ARATH	****	Haloacid dehalogenase-like hydrolase domain-containing protein	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf03243g00006.1	sp|P12543|TBA_PLAYO	***-	Tubulin alpha chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf06461g02006.1			Unknown protein		
Niben101Scf06091g03006.1	sp|Q9S9N9|CCR1_ARATH	***-	Cinnamoyl-CoA reductase 1	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	
Niben101Scf04084g03003.1	emb|CDY45886.1|	***-	BnaC01g28220D [Brassica napus]		
Niben101Scf02571g01006.1	sp|Q8L7F9|B3GTF_ARATH	****	Beta-1,3-galactosyltransferase 15	IPR002659 (Glycosyl transferase, family 31), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane), GO:0030246 (carbohydrate binding)
Niben101Scf04953g09006.1			Unknown protein		
Niben101Scf01685g07006.1	sp|Q501G5|FB250_ARATH	*-*-	F-box protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf01147g03003.1	sp|Q9M812|CUT1C_ARATH	***-	Protein CURVATURE THYLAKOID 1C, chloroplastic	IPR025564 (Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain)	
Niben101Scf15632g00024.1	gb|AAU90303.2|	***-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf03099g04005.1	AT5G40240.2	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=382	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf02402g01001.1	sp|Q6FQU5|DHH1_CANGA	****	ATP-dependent RNA helicase DHH1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01065g03003.1	emb|CDY13469.1|	***-	BnaA03g51870D [Brassica napus]		
Niben101Scf00854g11115.1			Unknown protein		
Niben101Scf00369g07015.1	sp|Q9MA60|FH11_ARATH	*-*-	Formin-like protein 11	IPR015425 (Formin, FH2 domain)	
Niben101Scf06999g01003.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf14877g00006.1	sp|Q7U7P7|ISPT_SYNPX	****	Isoprenyl transferase	IPR001441 (Decaprenyl diphosphate synthase-like)	GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf10916g01001.1	sp|Q91790|DUS1A_XENLA	*-**	Dual specificity protein phosphatase 1-A	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf00883g06011.1			Unknown protein		
Niben101Scf03129g01011.1	sp|A2YII8|NADE_ORYSI	--*-	Glutamine-dependent NAD(+) synthetase		
Niben101Scf13695g01002.1	sp|P20664|PRI1_MOUSE	****	DNA primase small subunit	IPR002755 (DNA primase, small subunit)	GO:0003896 (DNA primase activity), GO:0006269 (DNA replication, synthesis of RNA primer)
Niben101Scf08606g00017.1	ref|XP_002522648.1|	--*-	Gamma-gliadin precursor, putative [Ricinus communis] gb|EEF39735.1| Gamma-gliadin precursor, putative [Ricinus communis]		
Niben101Scf05241g02004.1	AT1G16220.1	***-	Protein phosphatase 2C family protein LENGTH=491	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf22424g01002.1	sp|Q9LJ44|COL12_ARATH	*-*-	Zinc finger protein CONSTANS-LIKE 12		
Niben101Scf14164g00013.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf06928g00002.1	ref|YP_002608363.1|	--*-	PSII 32 kDa protein [Vitis vinifera] emb|CAQ77603.1| PSII 32 kDa protein [Vitis vinifera] gb|ACS15235.1| PSII 32 kDa protein [Vitis vinifera]		
Niben101Scf01970g07003.1	AT1G35490.1	***-	bZIP family transcription factor LENGTH=300		
Niben101Scf03439g01009.1	AT1G53290.1	****	Galactosyltransferase family protein LENGTH=345	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf02062g02001.1	sp|Q8GYF7|NUP54_ARATH	****	Nuclear pore complex protein NUP54	IPR024864 (Nucleoporin Nup54/Nup57/Nup44), IPR025712 (Nucleoporin Nup54, alpha-helical domain)	GO:0005643 (nuclear pore)
Niben101Scf00067g02001.1	AT4G32660.1	****	Protein kinase superfamily protein LENGTH=400	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03096g01001.1	ref|NP_001054228.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf02108g01025.1	sp|Q9FFI5|NAC86_ARATH	*-*-	NAC domain-containing protein 86	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05712g02003.1	sp|Q6R8G0|PHO1A_ARATH	***-	Phosphate transporter PHO1 homolog 10	IPR004331 (SPX, N-terminal), IPR004342 (EXS, C-terminal)	GO:0016021 (integral component of membrane)
Niben101Scf10675g00006.1	AT2G19170.1	*-**	subtilisin-like serine protease 3 LENGTH=815	IPR015500 (Peptidase S8, subtilisin-related), IPR023827 (Peptidase S8, subtilisin,  Asp-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01359g02002.1	AT3G52525.1	*-*-	ovate family protein 6 LENGTH=159	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf01100g00004.1	AT3G07700.3	***-	Protein kinase superfamily protein LENGTH=724	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf15823g00010.1	emb|CDY12195.1|	***-	BnaC04g12250D [Brassica napus]	IPR010471 (Protein of unknown function DUF1068)	
Niben101Scf00703g05001.1	sp|Q92L76|LEUC_RHIME	*-*-	3-isopropylmalate dehydratase large subunit	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf14679g00001.1	sp|A4QK43|CLPP_ARAHI	*-*-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	
Niben101Scf01958g01006.1	sp|Q7Y1B6|GAI_SOLLC	***-	DELLA protein GAI	IPR005202 (Transcription factor GRAS), IPR030006 (Transcriptional factor DELLA)	GO:0000989 (transcription factor binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf02235g04025.1	sp|Q8S8Y2|ATPF_ATRBE	*-*-	ATP synthase subunit b, chloroplastic		
Niben101Scf00313g01004.1	sp|Q43792|ACCO_TOBAC	*-*-	1-aminocyclopropane-1-carboxylate oxidase	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf05025g11022.1	sp|O08550|KMT2B_MOUSE	--*-	Histone-lysine N-methyltransferase 2B	IPR001214 (SET domain)	GO:0005515 (protein binding)
Niben101Scf03221g02011.1	gb|AGV75925.1|	--*-	CFE protein [Gossypium barbadense]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf13762g01034.1	AT2G42850.1	***-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06687g02004.1	sp|Q5NGP7|KDSD_FRATT	***-	Arabinose 5-phosphate isomerase KdsD	IPR000644 (CBS domain), IPR001347 (Sugar isomerase (SIS))	GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf06637g00014.1	gb|ADX62220.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia mexicana]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf06836g00003.1			Unknown protein		
Niben101Scf01328g01012.1	sp|P27522|CB13_SOLLC	***-	Chlorophyll a-b binding protein 8, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf03648g01011.1	sp|P61242|YCF2_SOLLC	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf07907g00008.1			Unknown protein		
Niben101Scf04096g07008.1	sp|Q8GYA4|CRK10_ARATH	*-**	Cysteine-rich receptor-like protein kinase 10	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09509g00009.1	sp|Q98KS7|LOLD_RHILO	--*-	Lipoprotein-releasing system ATP-binding protein LolD		
Niben101Scf00927g13021.1	sp|Q9SIS3|MA656_ARATH	****	65-kDa microtubule-associated protein 6	IPR007145 (Microtubule-associated protein, MAP65/Ase1/PRC1)	GO:0000226 (microtubule cytoskeleton organization), GO:0000910 (cytokinesis), GO:0008017 (microtubule binding)
Niben101Scf10810g03005.1			Unknown protein		
Niben101Scf07141g00007.1	ref|XP_003637288.1|	*-*-	Ribulose bisphosphate carboxylase/oxygenase activase [Medicago truncatula]		
Niben101Scf07880g03022.1	AT4G32700.2	*-**	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding LENGTH=2154	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR016438 (RNA helicase, ATP-dependent, SK12/DOB1), IPR025696 (rRNA-processing arch domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf08259g01002.1			Unknown protein		
Niben101Ctg12249g00003.1	AT3G43610.1	*-**	Spc97 / Spc98 family of spindle pole body (SBP) component LENGTH=1207	IPR007259 (Gamma-tubulin complex component protein)	GO:0000226 (microtubule cytoskeleton organization), GO:0000922 (spindle pole), GO:0005815 (microtubule organizing center)
Niben101Scf06103g02013.1	ref|WP_029360100.1|	*-*-	MFS transporter [Methylobacterium sp. L2-4]		
Niben101Scf00705g04001.1	sp|Q9SWR3|MMT1_WEDBI	****	Methionine S-methyltransferase	IPR015424 (Pyridoxal phosphate-dependent transferase), IPR025779 (Methionine S-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003824 (catalytic activity), GO:0008168 (methyltransferase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf07648g01017.1	gb|ACG27246.1|	***-	tubulin alpha-6 chain [Zea mays]		
Niben101Scf09876g00010.1			Unknown protein		
Niben101Scf02015g07027.1	sp|P38416|LOXB_SOLLC	*-*-	Linoleate 9S-lipoxygenase B	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06326g00001.1	AT5G25280.1	***-	serine-rich protein-related LENGTH=220		
Niben101Scf00611g02013.1	emb|CDX97534.1|	*-*-	BnaA05g25450D [Brassica napus]		
Niben101Scf28009g00002.1	sp|A2X9L8|ILI5_ORYSI	***-	Transcription factor ILI5	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03900g00005.1	AT2G33735.1	*-*-	Chaperone DnaJ-domain superfamily protein LENGTH=119		
Niben101Scf00306g00007.1	sp|Q55C58|VPS16_DICDI	--*-	Vacuolar protein sorting-associated protein 16 homolog		
Niben101Scf00927g00002.1	sp|Q9C8K7|FBK21_ARATH	***-	F-box/kelch-repeat protein	IPR000014 (PAS domain), IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015915 (Kelch-type beta propeller)	GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0007165 (signal transduction)
Niben101Scf03479g03002.1			Unknown protein		
Niben101Scf00314g00005.1	sp|Q9MA44|SIPL5_ARATH	****	Signal peptide peptidase-like 5	IPR003137 (Protease-associated domain, PA), IPR006639 (Presenilin/signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf05201g02010.1	gb|KEH33538.1|	****	hydroxymethylglutaryl-CoA lyase [Medicago truncatula]	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004419 (hydroxymethylglutaryl-CoA lyase activity)
Niben101Scf01188g10004.1	sp|Q50KA9|NDKA_CANFA	****	Nucleoside diphosphate kinase A	IPR001564 (Nucleoside diphosphate kinase)	GO:0004550 (nucleoside diphosphate kinase activity), GO:0005524 (ATP binding), GO:0006165 (nucleoside diphosphate phosphorylation), GO:0006183 (GTP biosynthetic process), GO:0006228 (UTP biosynthetic process), GO:0006241 (CTP biosynthetic process)
Niben101Scf04664g03013.1	sp|A2WY46|EAR1_ORYSI	*-*-	Protein terminal ear1 homolog		
Niben101Scf12541g00023.1			Unknown protein		
Niben101Scf10027g00002.1	sp|Q39110|GAOX1_ARATH	***-	Gibberellin 20 oxidase 1	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf06966g02007.1	sp|Q9SRD8|EC11_ARATH	***-	Egg cell-secreted protein 1.1	IPR008502 (Prolamin-like domain)	
Niben101Scf05596g00024.1	sp|Q3E911|PP400_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Ctg15514g00005.1	sp|Q91ZQ0|VMP1_RAT	***-	Vacuole membrane protein 1		
Niben101Scf05249g04004.1	sp|Q9FKZ3|LBD36_ARATH	***-	LOB domain-containing protein 36	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf08149g00011.1	sp|P93654|SYP22_ARATH	***-	Syntaxin-22	IPR010989 (t-SNARE)	GO:0005515 (protein binding), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf12318g00009.1	gb|AAU90304.1|	--*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf02636g05003.1			Unknown protein		
Niben101Scf10595g01007.1	sp|P54873|HMCS_ARATH	****	Hydroxymethylglutaryl-CoA synthase	IPR010122 (Hydroxymethylglutaryl-CoA synthase, eukaryotic)	GO:0003824 (catalytic activity), GO:0004421 (hydroxymethylglutaryl-CoA synthase activity), GO:0008152 (metabolic process), GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf05764g05016.1	AT1G19730.1	***-	Thioredoxin superfamily protein LENGTH=119	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02044g04005.1	sp|Q964D8|BUP1_DICDI	***-	Beta-ureidopropionase	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf00747g09009.1	sp|Q338N2|C3H62_ORYSJ	*-*-	Zinc finger CCCH domain-containing protein 62	IPR000571 (Zinc finger, CCCH-type), IPR003034 (SAP domain)	GO:0046872 (metal ion binding)
Niben101Scf03110g05009.1	sp|Q94A43|BEH2_ARATH	***-	BES1/BZR1 homolog protein 2	IPR008540 (BZR1, transcriptional repressor)	
Niben101Scf00419g00001.1	ref|WP_025069310.1|	*-*-	acetyl-CoA carboxylase [Bacteroides propionicifaciens]	IPR007934 (Alpha-L-arabinofuranosidase B, arabinose-binding domain), IPR012878 (Protein of unknown function DUF1680)	GO:0046373 (L-arabinose metabolic process), GO:0046556 (alpha-L-arabinofuranosidase activity)
Niben101Scf01991g00007.1	tpg|DAA58042.1|	--*-	TPA: hypothetical protein ZEAMMB73_985322, partial [Zea mays]		
Niben101Scf03208g00006.1	sp|O49421|FB238_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf04160g00015.1	AT4G23840.1	***-	Leucine-rich repeat (LRR) family protein LENGTH=597	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf04367g00029.1	sp|Q8S397|NHX4_ARATH	*-**	Sodium/hydrogen exchanger 4	IPR006153 (Cation/H+ exchanger), IPR018422 (Cation/H+ exchanger, CPA1 family)	GO:0005774 (vacuolar membrane), GO:0005886 (plasma membrane), GO:0006812 (cation transport), GO:0006814 (sodium ion transport), GO:0006885 (regulation of pH), GO:0009651 (response to salt stress), GO:0015299 (solute:proton antiporter activity), GO:0015385 (sodium:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055075 (potassium ion homeostasis), GO:0055085 (transmembrane transport)
Niben101Scf03830g03001.1	gb|AAT66777.2|	*-*-	Late blight resistance protein, putative [Solanum demissum]		
Niben101Scf08054g00001.1	AT4G00340.1	****	receptor-like protein kinase 4 LENGTH=818	IPR001264 (Glycosyl transferase, family 51), IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR023346 (Lysozyme-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00320g01012.1	gb|ABK78687.1|	****	GTP binding protein [Brassica rapa]	IPR004910 (Yippee/Mis18), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf05982g01004.1	sp|Q54QC8|SEC1_DICDI	****	Protein transport protein sec1	IPR001619 (Sec1-like protein), IPR027482 (Sec1-like, domain 2)	GO:0006904 (vesicle docking involved in exocytosis), GO:0016192 (vesicle-mediated transport)
Niben101Scf14133g00010.1			Unknown protein		
Niben101Scf00271g02013.1	AT5G45170.1	***-	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=372	IPR023214 (HAD-like domain)	
Niben101Scf01051g01013.1	sp|A8AZU4|MUTS_STRGC	--**	DNA mismatch repair protein MutS	IPR007696 (DNA mismatch repair protein MutS, core)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf09276g00002.1	AT3G16490.1	***-	IQ-domain 26 LENGTH=389	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf18121g00007.1	AT5G05710.1	***-	Pleckstrin homology (PH) domain superfamily protein LENGTH=144	IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf03570g04003.1	sp|Q24UB9|NUOH_DESHY	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf02929g06012.1			Unknown protein		
Niben101Scf06195g00002.1	AT1G07890.3	****	ascorbate peroxidase 1 LENGTH=250	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01729g00001.1	emb|CDX95654.1|	***-	BnaC03g25350D [Brassica napus]		
Niben101Scf04934g04013.1	sp|A7FFX4|HSCB_YERP3	*-**	Co-chaperone protein HscB	IPR004640 (Co-chaperone Hsc20)	GO:0006457 (protein folding), GO:0051087 (chaperone binding), GO:0051259 (protein oligomerization)
Niben101Scf07355g01004.1	sp|P59468|LBD24_ARATH	***-	LOB domain-containing protein 24	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf02063g04001.1	sp|Q9HZP6|ETFB_PSEAE	****	Electron transfer flavoprotein subunit beta	IPR012255 (Electron transfer flavoprotein, beta subunit)	GO:0009055 (electron carrier activity)
Niben101Scf01124g15002.1	sp|Q8LFJ9|GLIP7_ARATH	*-*-	GDSL esterase/lipase 7	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Ctg12987g00001.1	AT1G11925.1	***-	Stigma-specific Stig1 family protein LENGTH=140	IPR006969 (Stigma-specific protein Stig1)	
Niben101Scf13364g00002.1	AT4G21480.1	****	sugar transporter protein 12 LENGTH=502	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf13332g00010.1	AT5G22510.1	***-	alkaline/neutral invertase LENGTH=617	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf04773g00021.1	sp|P31531|1A1C_SOYBN	***-	1-aminocyclopropane-1-carboxylate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00635g07005.1	sp|Q8VEH6|CBWD1_MOUSE	--*-	COBW domain-containing protein 1	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Ctg08837g00003.1	AT4G00630.2	*-*-	K+ efflux antiporter 2 LENGTH=1185		
Niben101Scf03370g00001.1	AT1G63210.1	****	Transcription elongation factor Spt6 LENGTH=1197	IPR010994 (RuvA domain 2-like), IPR012337 (Ribonuclease H-like domain), IPR012340 (Nucleic acid-binding, OB-fold), IPR017072 (Transcription elongation factor Spt6), IPR023097 (Tex RuvX-like domain), IPR023323 (Tex-like domain), IPR028083 (Spt6 acidic, N-terminal domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0032784 (regulation of DNA-templated transcription, elongation)
Niben101Scf03817g12029.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04294g06002.1	sp|Q93YT1|GLR32_ARATH	*-**	Glutamate receptor 3.2	IPR001320 (Ionotropic glutamate receptor)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf05969g01009.1	sp|Q68FT3|PYRD2_RAT	*-*-	Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2		
Niben101Scf02002g04005.1	emb|CDY45104.1|	***-	BnaA02g04720D [Brassica napus]		
Niben101Scf04407g02021.1	sp|Q9SRH5|VDAC1_ARATH	****	Mitochondrial outer membrane protein porin 1	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0055085 (transmembrane transport)
Niben101Scf02474g01024.1	sp|P43186|BEV1M_BETPN	***-	Major pollen allergen Bet v 1-M/N	IPR000916 (Bet v I domain), IPR023393 (START-like domain), IPR024949 (Bet v I type allergen)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf01774g02017.1			Unknown protein		
Niben101Scf06280g01005.1	sp|Q9SRH9|SNL1_ARATH	*-*-	Paired amphipathic helix protein Sin3-like 1	IPR003822 (Paired amphipathic helix)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf16660g00004.1			Unknown protein		
Niben101Scf05368g03010.1	AT3G08890.1	***-	Protein of unknown function, DUF538 LENGTH=170	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf08869g00002.1	sp|Q41238|LOX16_SOLTU	***-	Linoleate 9S-lipoxygenase 6	IPR000907 (Lipoxygenase), IPR027433 (Lipoxygenase, domain 3)	GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05717g02003.1	ref|NP_001150011.1|	***-	sap [Zea mays]	IPR011001 (Saposin-like)	GO:0006629 (lipid metabolic process)
Niben101Scf08819g00017.1	prf||1718316A	****	granule-bound starch synthase	IPR011835 (Glycogen/starch synthase, ADP-glucose type), IPR029056 (Ribokinase-like)	GO:0009011 (starch synthase activity), GO:0009058 (biosynthetic process), GO:0009250 (glucan biosynthetic process)
Niben101Scf12928g01003.1	ref|NP_001048198.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf25866g00005.1	sp|Q9FMK7|BT1_ARATH	*-*-	BTB/POZ and TAZ domain-containing protein 1	IPR000197 (Zinc finger, TAZ-type)	GO:0003712 (transcription cofactor activity), GO:0004402 (histone acetyltransferase activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf11154g00012.1	AT2G20990.3	***-	synaptotagmin A LENGTH=579	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf09577g00007.1	sp|Q3ZCC9|SEC13_BOVIN	***-	Protein SEC13 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04871g20001.1	sp|P46518|LEA14_GOSHI	*-*-	Late embryogenesis abundant protein Lea14-A	IPR013783 (Immunoglobulin-like fold)	
Niben101Scf04869g03003.1			Unknown protein		
Niben101Scf14427g00018.1	sp|Q7Y1C4|BRC2B_ARATH	*-*-	Protein BREAST CANCER SUSCEPTIBILITY 2 homolog B	IPR002093 (BRCA2 repeat)	
Niben101Scf02357g07011.1	gb|AES99821.2|	****	RNA polymerase II transcription factor SIII (elongin) subunit A [Medicago truncatula]	IPR010684 (RNA polymerase II transcription factor SIII, subunit A)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016021 (integral component of membrane)
Niben101Scf03076g00013.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf05171g00001.1	AT3G05840.2	****	Protein kinase superfamily protein LENGTH=409	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00054g00002.1	AT5G35220.1	****	Peptidase M50 family protein LENGTH=548	IPR008915 (Peptidase M50)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00239g09012.1			Unknown protein		
Niben101Scf07140g00016.1	sp|Q9UBC3|DNM3B_HUMAN	*-**	DNA (cytosine-5)-methyltransferase 3B	IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006306 (DNA methylation)
Niben101Scf00389g00005.1	sp|C4JI06|VPS10_UNCRE	--*-	Vacuolar protein sorting/targeting protein 10		
Niben101Scf18418g02007.1	AT2G42850.1	***-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13762g01039.1	sp|Q4VXU2|PAP1L_HUMAN	*-**	Polyadenylate-binding protein 1-like	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01746g03002.1	sp|Q5REC9|RAB8B_PONAB	***-	Ras-related protein Rab-8B	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf04663g04031.1	AT5G25540.1	***-	CTC-interacting domain 6 LENGTH=175	IPR003892 (Ubiquitin system component Cue)	GO:0005515 (protein binding)
Niben101Scf01145g00004.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC)	GO:0043531 (ADP binding)
Niben101Scf02647g03011.1	sp|Q9FKH1|SAP_ARATH	***-	Transcriptional regulator STERILE APETALA	IPR001810 (F-box domain), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05997g00036.1	sp|Q2Z2E9|SCR_IPONI	*-*-	Protein SCARECROW	IPR005202 (Transcription factor GRAS)	
Niben101Scf06775g00035.1	ref|XP_002523935.1|	*-**	hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gb|EEF38422.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05955g03058.1	sp|Q54XK2|SC61A_DICDI	****	Protein transport protein Sec61 subunit alpha	IPR002208 (SecY/SEC61-alpha family), IPR011697 (Peptidase C26), IPR023201 (SecY subunit domain), IPR029062 (Class I glutamine amidotransferase-like)	GO:0006541 (glutamine metabolic process), GO:0015031 (protein transport), GO:0016020 (membrane), GO:0016787 (hydrolase activity)
Niben101Scf03113g03014.1	ref|WP_015140241.1|	*-*-	GUN4 protein [N [Nostoc sp. PCC 7524]	IPR008629 (GUN4-like)	
Niben101Scf06000g02001.1	sp|Q9LFA5|MED28_ARATH	***-	Mediator of RNA polymerase II transcription subunit 28		
Niben101Scf02680g02021.1	sp|Q680Q4|SIZ1_ARATH	***-	E3 SUMO-protein ligase SIZ1	IPR004181 (Zinc finger, MIZ-type)	GO:0008270 (zinc ion binding)
Niben101Scf00073g05011.1	AT1G29800.1	***-	RING/FYVE/PHD-type zinc finger family protein LENGTH=510	IPR007461 (Ysc84 actin-binding domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0046872 (metal ion binding)
Niben101Scf02541g03003.1	sp|B7IM76|TRPB_BACC2	****	Tryptophan synthase beta chain	IPR023026 (Tryptophan synthase beta chain/beta chain-like)	GO:0000162 (tryptophan biosynthetic process), GO:0004834 (tryptophan synthase activity), GO:0006568 (tryptophan metabolic process)
Niben101Scf06653g01001.1	sp|Q9LVF9|PP245_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05813g09010.1	sp|O48723|PLP2_ARATH	***-	Patatin-like protein 2	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf03035g00017.1	AT2G20590.1	*-*-	Reticulon family protein LENGTH=431	IPR003388 (Reticulon)	
Niben101Scf07778g01020.1	ref|XP_007035914.1|	****	Calcium-dependent lipid-binding family protein isoform 1 [Theobroma cacao] gb|EOY06840.1| Calcium-dependent lipid-binding family protein isoform 1 [Theobroma cacao]	IPR000008 (C2 domain), IPR009291 (Vacuolar protein sorting-associated protein 62), IPR009543 (Vacuolar protein sorting-associated protein 13 domain), IPR010482 (Peroxin/Dysferlin domain), IPR011993 (Pleckstrin homology-like domain), IPR026847 (Vacuolar protein sorting-associated protein 13)	GO:0005515 (protein binding), GO:0016021 (integral component of membrane)
Niben101Scf01922g08016.1	AT4G28720.1	****	Flavin-binding monooxygenase family protein LENGTH=426	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01998g02007.1	dbj|BAD66730.1|	***-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]	IPR015421 (Pyridoxal phosphate-dependent transferase, major region, subdomain 1)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf11108g03014.1			Unknown protein		
Niben101Scf03010g04001.1	sp|Q9ZW06|PUM2_ARATH	*-*-	Pumilio homolog 2	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf11232g00020.1	sp|Q55G18|POMP_DICDI	***-	Proteasome maturation protein homolog	IPR008012 (Proteasome maturation factor UMP1)	
Niben101Scf00188g01001.1	sp|Q99437|VATO_HUMAN	****	V-type proton ATPase 21 kDa proteolipid subunit	IPR000245 (V-ATPase proteolipid subunit), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf00820g06003.1	ref|XP_003627123.1|	*-*-	EPIDERMAL PATTERNING FACTOR-like protein [Medicago truncatula]		
Niben101Scf11688g01035.1	sp|A6QLA6|CAF1A_BOVIN	*-*-	Chromatin assembly factor 1 subunit A	IPR022043 (Chromatin assembly factor 1 subunit A)	
Niben101Scf00211g00029.1	sp|P10111|PPIA_RAT	****	Peptidyl-prolyl cis-trans isomerase A	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf00558g00001.1	sp|P31562|ACCD_CUSRE	*-**	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	IPR000438 (Acetyl-CoA carboxylase carboxyl transferase, beta subunit), IPR029045 (ClpP/crotonase-like domain)	GO:0003989 (acetyl-CoA carboxylase activity), GO:0006633 (fatty acid biosynthetic process), GO:0009317 (acetyl-CoA carboxylase complex), GO:0016874 (ligase activity)
Niben101Scf15817g01014.1	emb|CDX81297.1|	***-	BnaC09g07080D [Brassica napus]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf26781g00017.1	sp|Q8L4M1|THOC6_ARATH	***-	THO complex subunit 6	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02289g03002.1	sp|Q8N7C7|RN148_HUMAN	--*-	RING finger protein 148	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03850g02024.1	AT4G23900.1	****	Nucleoside diphosphate kinase family protein LENGTH=237	IPR001564 (Nucleoside diphosphate kinase)	GO:0004550 (nucleoside diphosphate kinase activity), GO:0005524 (ATP binding), GO:0006165 (nucleoside diphosphate phosphorylation), GO:0006183 (GTP biosynthetic process), GO:0006228 (UTP biosynthetic process), GO:0006241 (CTP biosynthetic process)
Niben101Scf02539g00005.1	gb|AAR13702.1|	--*-	nuclear division RFT1-like protein [Brassica oleracea]		
Niben101Scf06407g00011.1	sp|Q9SS47|PUM4_ARATH	*-*-	Pumilio homolog 4	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf03278g02004.1	ref|WP_025911282.1|	***-	plasmid partition ParA protein [Enterobacter sp. 5-4]	IPR010775 (Protein of unknown function DUF1365)	
Niben101Scf02665g12003.1	sp|Q9ZVI6|LOR8_ARATH	***-	Protein LURP-one-related 8	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf04437g00010.1	sp|Q9LDE4|ERF83_ARATH	*-**	Ethylene-responsive transcription factor 7	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02384g00005.1	gb|AFR65104.1|	***-	lipid transfer-like protein, partial [Arabidopsis lyrata subsp. petraea]	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02635g04001.1			Unknown protein		
Niben101Scf00494g07012.1	ref|WP_026731445.1|	****	GCN5 family acetyltransferase [Fischerella sp. PCC 9605]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf05151g03007.1	sp|D2XNQ8|FLOT1_MEDTR	***-	Flotillin-like protein 1	IPR027705 (Flotillin family)	
Niben101Scf15536g01018.1	sp|Q17QU7|DHR13_BOVIN	****	Dehydrogenase/reductase SDR family member 13	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf05014g00005.1			Unknown protein		
Niben101Scf02422g02004.1	sp|Q8DCJ0|SSB_VIBVU	--**	Single-stranded DNA-binding protein	IPR000424 (Primosome PriB/single-strand DNA-binding)	GO:0003697 (single-stranded DNA binding), GO:0006260 (DNA replication)
Niben101Scf07528g01008.1	sp|Q47319|YFIP_ECOLI	*-*-	DTW domain-containing protein YfiP	IPR005636 (DTW)	
Niben101Scf19062g00011.1	emb|CDY69041.1|	***-	BnaAnng29180D [Brassica napus]	IPR004926 (Late embryogenesis abundant protein, LEA-5)	GO:0006950 (response to stress)
Niben101Scf01124g12004.1	AT1G33110.1	*-*-	MATE efflux family protein LENGTH=494	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf13263g00006.1	sp|Q15800|MSMO1_HUMAN	*-*-	Methylsterol monooxygenase 1	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02858g01007.1	sp|Q6NRS6|DRAM1_XENLA	--*-	DNA damage-regulated autophagy modulator protein 1		
Niben101Scf01051g01019.1	sp|Q2JT35|MUTS_SYNJA	*-**	DNA mismatch repair protein MutS	IPR000432 (DNA mismatch repair protein MutS, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf01495g01002.1	AT1G07730.2	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=389	IPR004265 (Plant disease resistance response protein)	
Niben101Scf01623g14006.1	sp|O04251|Y4211_ARATH	*-*-	BRCT domain-containing protein	IPR001357 (BRCT domain)	
Niben101Scf00298g01006.1	AT1G19180.1	***-	jasmonate-zim-domain protein 1 LENGTH=253	IPR010399 (Tify), IPR018467 (CO/COL/TOC1, conserved site)	
Niben101Scf07089g02001.1	sp|Q9ZSK5|ZOG_PHALU	*-*-	Zeatin O-glucosyltransferase	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02831g01008.1	gb|ADG60255.1|	***-	stigma/style cell cycle inhibitor 1 [Nicotiana tabacum]		
Niben101Scf00712g01003.1	AT1G76440.1	***-	HSP20-like chaperones superfamily protein LENGTH=143	IPR008978 (HSP20-like chaperone)	
Niben101Scf00111g00002.1	sp|P53607|ILVA_BURM1	****	L-threonine dehydratase biosynthetic IlvA	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme), IPR005787 (Threonine dehydratase, biosynthetic)	GO:0004794 (L-threonine ammonia-lyase activity), GO:0009097 (isoleucine biosynthetic process)
Niben101Scf08293g02001.1	sp|P49030|MGN_ORYSJ	***-	Protein mago nashi homolog	IPR004023 (Mago nashi protein)	GO:0005634 (nucleus)
Niben101Scf13402g00011.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04114g01052.1			Unknown protein		
Niben101Scf08926g03012.1	AT5G01990.1	***-	Auxin efflux carrier family protein LENGTH=431	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf07590g01011.1	emb|CDY01186.1|	*-*-	BnaA04g06330D [Brassica napus]		
Niben101Scf02476g04001.1			Unknown protein		
Niben101Scf00157g07007.1	sp|Q9LJU0|CBL10_ARATH	*-*-	COBRA-like protein 10		
Niben101Scf01596g04002.1	gb|KEH43144.1|	***-	knotted 1-binding protein [Medicago truncatula]		
Niben101Scf07763g01012.1	sp|Q94AU2|SEC22_ARATH	****	25.3 kDa vesicle transport protein	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf03676g03012.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related), IPR023827 (Peptidase S8, subtilisin,  Asp-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06144g00014.1	AT1G30580.1	****	GTP binding LENGTH=394	IPR004396 (Ribosome-binding ATPase YchF/Obg-like ATPase 1), IPR012675 (Beta-grasp domain), IPR023192 (TGS-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf03596g00010.1	sp|Q9C7G1|PUB45_ARATH	*-*-	U-box domain-containing protein 45	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01463g00016.1	AT3G20270.1	*-*-	lipid-binding serum glycoprotein family protein LENGTH=722		
Niben101Scf11552g02012.1	sp|Q9FZ80|SOT17_ARATH	*-**	Cytosolic sulfotransferase 17	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf00927g09001.1	sp|O55012|PICAL_RAT	*-**	Phosphatidylinositol-binding clathrin assembly protein	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf09444g00008.1	AT4G02120.1	****	CTP synthase family protein LENGTH=556	IPR004468 (CTP synthase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003883 (CTP synthase activity), GO:0006221 (pyrimidine nucleotide biosynthetic process)
Niben101Scf08515g00033.1	gb|ADH43621.1|	***-	sex-linked protein 9 [Silene latifolia]	IPR017498 (Photosystem I PsaO)	
Niben101Scf05855g04015.1	AT3G60400.1	****	Mitochondrial transcription termination factor family protein LENGTH=558	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02816g03002.1	ref|XP_002514962.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF47516.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05082g04017.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00067g01004.1	ref|XP_003627081.1|	***-	Protein CHUP1 [Medicago truncatula] gb|AET01557.1| actin-binding family protein, putative [Medicago truncatula]		
Niben101Scf01991g03021.1	tpg|DAA58059.1|	***-	TPA: hypothetical protein ZEAMMB73_350936 [Zea mays]	IPR002524 (Cation efflux protein)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02108g01027.1	sp|Q67Z52|TBCB_ARATH	***-	Tubulin-folding cofactor B	IPR000938 (CAP Gly-rich domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf00154g04002.1			Unknown protein		
Niben101Scf02361g08011.1	sp|A0KJT2|F16PA_AERHH	****	Fructose-1,6-bisphosphatase class 1	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf04109g04012.1	sp|P82381|ICI_LINUS	****	Proteinase inhibitor	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding)
Niben101Scf03778g00005.1	AT1G55140.1	****	Ribonuclease III family protein LENGTH=237	IPR000999 (Ribonuclease III domain)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0006396 (RNA processing)
Niben101Scf05453g00013.1	sp|O80842|CFTSY_ARATH	*-*-	Cell division protein FtsY homolog, chloroplastic	IPR013822 (Signal recognition particle, SRP54 subunit, helical bundle)	GO:0005525 (GTP binding), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane)
Niben101Scf38556g00006.1	sp|Q9LZM8|BLH9_ARATH	***-	BEL1-like homeodomain protein 9	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01926g01007.1	AT4G21750.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=762	IPR002913 (START domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008289 (lipid binding), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg15305g00004.1	gb|AAM97018.1|	--*-	kinesin-like protein [Arabidopsis thaliana]	IPR001752 (Kinesin motor domain)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf07817g01007.1	AT3G19080.1	*-*-	SWIB complex BAF60b domain-containing protein LENGTH=462	IPR003121 (SWIB/MDM2 domain), IPR009057 (Homeodomain-like), IPR012682 (Transcription regulator Myc, N-terminal), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09547g02002.1	sp|B8D683|PSB2_DESK1	****	Proteasome subunit beta 2	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf10528g02002.1	sp|Q9MBA1|CAO_ARATH	****	Chlorophyllide a oxygenase, chloroplastic	IPR013626 (Pheophorbide a oxygenase), IPR017941 (Rieske [2Fe-2S] iron-sulphur domain)	GO:0005506 (iron ion binding), GO:0010277 (chlorophyllide a oxygenase [overall] activity), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05697g11020.1	sp|Q9SWB6|PM36_SOYBN	***-	Seed maturation protein PM36	IPR016084 (Haem oxygenase-like, multi-helical)	
Niben101Scf07346g02005.1	sp|Q38897|BEL1_ARATH	*-*-	Homeobox protein BEL1 homolog	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00360g04010.1	sp|Q8S9L6|CRK29_ARATH	*-**	Cysteine-rich receptor-like protein kinase 29	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08592g00004.1	sp|Q5QJC3|DCR1B_CHICK	***-	5' exonuclease Apollo	IPR001279 (Beta-lactamase-like), IPR011084 (DNA repair metallo-beta-lactamase)	
Niben101Scf11071g00003.1	sp|P93194|RPK1_IPONI	--*-	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00481g00002.1	sp|Q6ICX4|PTBP3_ARATH	*-**	Polypyrimidine tract-binding protein homolog 3	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf08918g03001.1	sp|P47735|RLK5_ARATH	--*-	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00068g00013.1	sp|Q3E6Q1|PPR32_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00570g03008.1	ref|XP_003589006.1|	*-*-	Chloroplast unusual p [Medicago truncatula]		
Niben101Scf21107g00010.1	sp|Q6CFI3|DDI1_YARLI	***-	DNA damage-inducible protein 1	IPR009060 (UBA-like), IPR021109 (Aspartic peptidase domain), IPR029071 (Ubiquitin-related domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf00075g00009.1	AT2G44390.1	*-*-	Cysteine/Histidine-rich C1 domain family protein LENGTH=209	IPR011424 (C1-like)	GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Ctg16241g00003.1	gb|ACJ07139.1|	*-*-	malonyl-CoA:ACP transacylase 1-3 [Arachis hypogaea]		
Niben101Scf11954g01002.1	sp|Q40477|ERF4_TOBAC	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02074g04009.1	gb|AFI44321.1|	***-	maturase (mitochondrion) [Silene vulgaris]	IPR000477 (Reverse transcriptase domain), IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf13710g01006.1	sp|Q9NQW7|XPP1_HUMAN	***-	Xaa-Pro aminopeptidase 1	IPR000994 (Peptidase M24, structural domain), IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	GO:0016787 (hydrolase activity)
Niben101Scf03037g01005.1	ref|XP_002524503.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37943.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00474g05001.1			Unknown protein		
Niben101Scf04316g00001.1	sp|Q9FIT9|HS217_ARATH	***-	21.7 kDa class VI heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf04740g01005.1	sp|B0KCJ2|RPOB_THEP3	*-**	DNA-directed RNA polymerase subunit beta	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf01111g04016.1	sp|Q6P2Q9|PRP8_HUMAN	*-**	Pre-mRNA-processing-splicing factor 8	IPR027652 (Pre-mRNA-processing-splicing factor 8)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf00901g06008.1	sp|Q9SSB8|CX5B2_ARATH	****	Cytochrome c oxidase subunit 5b-2, mitochondrial	IPR002124 (Cytochrome c oxidase, subunit Vb)	GO:0004129 (cytochrome-c oxidase activity), GO:0005740 (mitochondrial envelope)
Niben101Scf02059g06011.1	sp|Q0ZJ18|RR4_VITVI	*-*-	30S ribosomal protein S4, chloroplastic	IPR001912 (Ribosomal protein S4/S9, N-terminal), IPR022801 (Ribosomal protein S4/S9)	GO:0005622 (intracellular), GO:0019843 (rRNA binding)
Niben101Ctg14968g00002.1	AT5G58320.2	*-*-	Kinase interacting (KIP1-like) family protein LENGTH=558	IPR011684 (KIP1-like)	
Niben101Ctg05793g00004.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf01070g04009.1	sp|Q8TAT5|NEIL3_HUMAN	--*-	Endonuclease 8-like 3	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf01847g01002.1	sp|P08894|CHSA_PETHY	*-*-	Chalcone synthase A	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf07068g00001.1	sp|Q39204|MYC2_ARATH	*-*-	Transcription factor MYC2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02010g01019.1	ref|WP_029882935.1|	--*-	alpha/beta hydrolase [Enterobacter sp. T1-1]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf14164g00011.1	sp|Q9Y6U7|RN215_HUMAN	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07313g00002.1	AT1G70320.1	*-**	ubiquitin-protein ligase 2 LENGTH=3658	IPR000569 (HECT)	GO:0004842 (ubiquitin-protein transferase activity)
Niben101Scf08753g02008.1	sp|Q0GZS3|USP_CUCME	***-	UDP-sugar pyrophosphorylase	IPR002618 (UTP--glucose-1-phosphate uridylyltransferase family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0008152 (metabolic process), GO:0070569 (uridylyltransferase activity)
Niben101Scf07294g00015.1	ref|XP_002519549.1|	****	nucleic acid binding protein, putative [Ricinus communis] gb|EEF42963.1| nucleic acid binding protein, putative [Ricinus communis]	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf07759g01009.1	AT3G22680.1	*-**	RNA-DIRECTED DNA METHYLATION 1 LENGTH=163	IPR015270 (Protein RDM1)	GO:0005634 (nucleus), GO:0044030 (regulation of DNA methylation)
Niben101Scf12318g00005.1	sp|Q9UNL4|ING4_HUMAN	***-	Inhibitor of growth protein 4	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR024610 (Inhibitor of growth protein, N-terminal), IPR028651 (ING family)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016568 (chromatin modification), GO:0035064 (methylated histone binding)
Niben101Scf00570g05008.1	sp|Q5EA37|CC130_BOVIN	***-	Coiled-coil domain-containing protein 130	IPR007590 (CWC16 protein)	
Niben101Scf09997g00024.1	sp|Q9LV40|ROGF8_ARATH	****	Rho guanine nucleotide exchange factor 8	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf07096g01002.1	sp|Q39236|T2AG_ARATH	****	Transcription initiation factor IIA subunit 2	IPR003194 (Transcription initiation factor IIA, gamma subunit), IPR009083 (Transcription factor IIA, helical), IPR009088 (Transcription factor IIA, beta-barrel)	GO:0005672 (transcription factor TFIIA complex), GO:0006367 (transcription initiation from RNA polymerase II promoter)
Niben101Scf02736g07004.1	sp|Q40702|MADS2_ORYSJ	****	MADS-box transcription factor 2	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf19383g00001.1	sp|Q84K00|NAC78_ARATH	*-*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04316g06004.1			Unknown protein		
Niben101Scf00543g02007.1	sp|Q9XZE5|PP2AA_DICDI	***-	Serine/threonine-protein phosphatase 2A catalytic subunit A	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf06848g10001.1	sp|B0R8D0|RS7_HALS3	*-*-	30S ribosomal protein S7	IPR000235 (Ribosomal protein S5/S7), IPR023798 (Ribosomal protein S7 domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0006412 (translation)
Niben101Scf00108g01009.1	sp|Q5HZ36|GAT21_ARATH	*-**	GATA transcription factor 21	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01687g12006.1	sp|A8SE78|RPOC2_CERDE	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf06819g02006.1	sp|Q8LC83|RS242_ARATH	***-	40S ribosomal protein S24-2	IPR001976 (Ribosomal protein S24e), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04371g03008.1	gb|AGG55717.1|	-**-	cyclin-dependent protein kinase inhibitor Siamese [Gossypium arboreum]		
Niben101Scf01056g04002.1	AT2G25800.1	***-	Protein of unknown function (DUF810) LENGTH=987	IPR008528 (Protein of unknown function DUF810)	
Niben101Scf08702g00012.1	ref|XP_002873142.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH49401.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf01143g07002.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01765g01001.1			Unknown protein		
Niben101Scf00879g05002.1	sp|P74367|PSB27_SYNY3	****	Photosystem II lipoprotein Psb27	IPR025585 (Photosystem II Pbs27)	GO:0010207 (photosystem II assembly)
Niben101Scf22015g02025.1	sp|A5W382|FTSH_PSEP1	--*-	ATP-dependent zinc metalloprotease FtsH		
Niben101Scf11424g00006.1	sp|Q54Q31|PHB2_DICDI	***-	Prohibitin-2	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf05375g01004.1	sp|F4I2J8|CATIN_ARATH	***-	Cactin	IPR018816 (Cactin, central domain), IPR019134 (Cactin, C-terminal)	GO:0005515 (protein binding)
Niben101Scf03983g00014.1	sp|P93847|RL10_SOLME	*-*-	60S ribosomal protein L10	IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07231g00018.1	sp|Q9FLQ7|FH20_ARATH	*-*-	Formin-like protein 20	IPR000008 (C2 domain), IPR015425 (Formin, FH2 domain), IPR027643 (Formin-like family, plant), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0005515 (protein binding), GO:0005884 (actin filament), GO:0045010 (actin nucleation)
Niben101Scf03766g09012.1	gb|AHB32112.1|	***-	chalcone isomerase [Camellia sinensis]	IPR016087 (Chalcone isomerase)	GO:0016872 (intramolecular lyase activity)
Niben101Scf03932g07004.1	ref|NP_193381.1|	****	in [Arabidopsis thaliana] gb|AAO42160.1| putative membrane transporter [Arabidopsis thaliana] gb|AAO64127.1| putative membrane transporter [Arabidopsis thaliana] emb|CAJ00306.1| inositol transporter 4 [Arabidopsis thaliana] gb|AEE83759.1| inositol transporter 4 [Arabidopsis thaliana]	IPR005828 (General substrate transporter), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01184g01009.1	sp|Q9FI80|PP425_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02430g12008.1	sp|Q9LZX1|LOR15_ARATH	***-	Protein LURP-one-related 15	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf02314g00019.1			Unknown protein		
Niben101Scf03138g01021.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf07035g01008.1	gb|AAX38236.1|	*-*-	strictosidine synthase family protein [Brassica napus]	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf12159g09023.1	AT2G30570.1	****	photosystem II reaction center W LENGTH=133	IPR009806 (Photosystem II PsbW, class 2)	GO:0009507 (chloroplast), GO:0009523 (photosystem II), GO:0015979 (photosynthesis)
Niben101Scf00264g01004.1	gb|KEH27306.1|	*-*-	superkiller-like protein [Medicago truncatula]		
Niben101Scf00725g03013.1	AT3G18490.1	*-*-	Eukaryotic aspartyl protease family protein LENGTH=500	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf16706g01008.1	AT5G58005.1	****	Cytochrome c oxidase, subunit Vib family protein LENGTH=116	IPR003213 (Cytochrome c oxidase, subunit VIb)	GO:0004129 (cytochrome-c oxidase activity), GO:0005739 (mitochondrion)
Niben101Scf09153g05009.1	ref|XP_010109534.1|	*-*-	Histone-lysine N-methyltransferase [Morus notabilis] gb|EXC23138.1| Histone-lysine N-methyltransferase [Morus notabilis]		
Niben101Scf06103g02011.1	sp|O48724|WEB1_ARATH	--*-	Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1		
Niben101Scf03975g01005.1	emb|CDY10237.1|	*-*-	BnaC05g04800D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf13863g00015.1	sp|Q9LR69|PPR8_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Ctg13119g00003.1	sp|Q6GQV7|EDRF1_MOUSE	*-*-	Erythroid differentiation-related factor 1		
Niben101Scf01369g05023.1	sp|P94915|G3P_MYCAV	*-*-	Glyceraldehyde-3-phosphate dehydrogenase	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf06267g03024.1	AT2G17972.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 34 Blast hits to 34 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=158		
Niben101Scf01061g07013.1	AT4G20860.1	****	FAD-binding Berberine family protein LENGTH=530	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09074g00015.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01171g09008.1	AT1G04780.1	***-	Ankyrin repeat family protein LENGTH=664	IPR020683 (Ankyrin repeat-containing domain), IPR021832 (Ankyrin repeat domain-containing protein 13)	GO:0005515 (protein binding)
Niben101Scf15594g00018.1	sp|Q7Z5K2|WAPL_HUMAN	--*-	Wings apart-like protein homolog	IPR016024 (Armadillo-type fold), IPR022771 (Wings apart-like protein)	GO:0005488 (binding)
Niben101Scf04444g08002.1	gb|ABD33309.1|	*-**	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf09372g03030.1	sp|Q5ZJ54|TCPZ_CHICK	*-*-	T-complex protein 1 subunit zeta	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf05726g00008.1	ref|NP_001043098.1|	-**-	product [Oryza sativa Japonica Group]		
Niben101Scf10333g00017.1	sp|Q96HR8|NAF1_HUMAN	*-*-	H/ACA ribonucleoprotein complex non-core subunit NAF1	IPR007504 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1), IPR009000 (Translation protein, beta-barrel domain)	GO:0001522 (pseudouridine synthesis), GO:0042254 (ribosome biogenesis)
Niben101Scf10600g00004.1	sp|Q9FNA9|PDAT1_ARATH	****	Phospholipid:diacylglycerol acyltransferase 1	IPR003386 (Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0008374 (O-acyltransferase activity)
Niben101Scf06087g06004.1	emb|CAJ86139.1|	***-	OsJ_16710 [Oryza sativa Japonica Group]		
Niben101Scf01695g01005.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02275g02001.1	sp|Q9M1K2|PI5K4_ARATH	****	Phosphatidylinositol 4-phosphate 5-kinase 4	IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf03121g01001.1			Unknown protein		
Niben101Scf04118g01008.1	sp|Q9ZP55|DRP4C_ARATH	*-*-	Dynamin-related protein 4C	IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf11646g01005.1	sp|Q5RCG9|PFD3_PONAB	*-**	Prefoldin subunit 3	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex)
Niben101Scf11738g00001.1	AT4G11400.1	*-**	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=573	IPR000949 (ELM2 domain), IPR001606 (ARID DNA-binding domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf00698g02019.1	sp|Q0PGJ6|AKRC9_ARATH	****	Aldo-keto reductase family 4 member C9	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09079g00007.1	ref|XP_002528206.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF34163.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06720g00002.1	ref|NP_198085.1|	***-	Prefoldin chaperone subunit family protein [Arabidopsis thaliana] gb|AED93673.1| Prefoldin chaperone subunit family protein [Arabidopsis thaliana]		
Niben101Scf07196g01008.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01827g00003.1	sp|Q40702|MADS2_ORYSJ	****	MADS-box transcription factor 2	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf13703g00008.1	tpg|DAA41732.1|	*-*-	TPA: hypothetical protein ZEAMMB73_055425 [Zea mays]		
Niben101Scf05764g00002.1	sp|Q9FJY7|PP449_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00264g03009.1	AT1G21000.1	***-	PLATZ transcription factor family protein LENGTH=246	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf00056g04010.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08264g00008.1	AT3G62910.1	****	Peptide chain release factor 1 LENGTH=422	IPR004373 (Peptide chain release factor 1), IPR014720 (Double-stranded RNA-binding domain)	GO:0003747 (translation release factor activity), GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf03548g01010.1	sp|Q00958|LFY_ARATH	***-	Protein LEAFY	IPR002910 (Floricaula/leafy protein)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03321g02004.1	sp|Q6ZSG1|RN165_HUMAN	*-*-	RING finger protein 165	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03949g00024.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02280g02004.1	AT3G08510.1	****	phospholipase C 2 LENGTH=581	IPR001192 (Phosphoinositide phospholipase C family), IPR011992 (EF-hand domain pair)	GO:0004435 (phosphatidylinositol phospholipase C activity), GO:0005515 (protein binding), GO:0006629 (lipid metabolic process), GO:0007165 (signal transduction), GO:0008081 (phosphoric diester hydrolase activity), GO:0035556 (intracellular signal transduction)
Niben101Scf11103g01017.1			Unknown protein		
Niben101Scf18677g00008.1	sp|Q9ZPY7|XPO2_ARATH	*-*-	Exportin-2	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport)
Niben101Scf04608g05014.1	sp|Q9MA75|VIP1_ARATH	--*-	Transcription factor VIP1		
Niben101Scf01189g02021.1	sp|Q03164|KMT2A_HUMAN	*-**	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR003616 (Post-SET domain), IPR007728 (Pre-SET domain), IPR015880 (Zinc finger, C2H2-like)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0046872 (metal ion binding)
Niben101Scf00479g02014.1	sp|Q2KII6|NGDN_BOVIN	*-*-	Neuroguidin	IPR007146 (Sas10/Utp3/C1D)	
Niben101Scf06565g00009.1	AT5G58320.2	***-	Kinase interacting (KIP1-like) family protein LENGTH=558		
Niben101Scf09876g00011.1	sp|P02274|H2A1_TETPY	***-	Histone H2A.1	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf05688g08018.1			Unknown protein		
Niben101Scf00702g00010.1	gb|KEH27001.1|	--*-	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]		
Niben101Scf07160g00003.1	sp|Q8GYP6|PPR49_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Ctg01528g00001.1	AT4G00340.1	*-**	receptor-like protein kinase 4 LENGTH=818	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf14814g00004.1			Unknown protein		
Niben101Scf01818g04011.1	AT1G43770.2	*-*-	RING/FYVE/PHD zinc finger superfamily protein LENGTH=431	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf15689g00030.1	sp|P92949|FRO2_ARATH	****	Ferric reduction oxidase 2	IPR013121 (Ferric reductase, NAD binding), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01055g00002.1	AT2G33490.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=623	IPR027267 (Arfaptin homology (AH) domain/BAR domain)	
Niben101Scf04934g04012.1	gb|KEH41854.1|	*-*-	START-2 domain protein [Medicago truncatula]		
Niben101Scf01702g02006.1	sp|Q2HJG5|VPS35_BOVIN	***-	Vacuolar protein sorting-associated protein 35	IPR005378 (Vacuolar protein sorting-associated protein 35, Vps35)	GO:0015031 (protein transport), GO:0030904 (retromer complex), GO:0042147 (retrograde transport, endosome to Golgi)
Niben101Scf06369g03008.1	gb|AAL32622.1|	*-*-	Phospholipase like protein [Arabidopsis thaliana]	IPR007942 (Phospholipase-like)	
Niben101Scf06637g00013.1	sp|Q0I3F6|GCH1_HISS1	--*-	GTP cyclohydrolase 1		
Niben101Scf15653g01002.1	sp|D1A8M1|MSHB_THECD	*-*-	1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase	IPR003737 (N-acetylglucosaminyl phosphatidylinositol deacetylase-related), IPR024078 (Putative deacetylase LmbE-like domain)	
Niben101Scf15391g01009.1	emb|CDX96276.1|	***-	BnaA07g28870D [Brassica napus]	IPR019308 (Protein of unknown function DUF2359, TMEM214)	
Niben101Scf05110g00007.1	sp|Q8S8Q6|TET8_ARATH	***-	Tetraspanin-8	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf09955g01018.1	sp|Q3B724|CALS5_ARATH	*-*-	Callose synthase 5		
Niben101Scf04944g01005.1	AT2G26640.1	***-	3-ketoacyl-CoA synthase 11 LENGTH=509	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01537g04012.1			Unknown protein		
Niben101Scf07437g01001.1	sp|Q9XZE5|PP2AA_DICDI	***-	Serine/threonine-protein phosphatase 2A catalytic subunit A	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf03733g01009.1	sp|Q7MH54|RRAA_VIBVY	****	Regulator of ribonuclease activity A	IPR005493 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase), IPR010203 (Regulator of ribonuclease activity A)	GO:0008428 (ribonuclease inhibitor activity), GO:0051252 (regulation of RNA metabolic process)
Niben101Scf05664g04011.1	sp|O59521|EF2_PYRHO	***-	Elongation factor 2	IPR000640 (Translation elongation factor EFG, V domain), IPR000795 (Elongation factor, GTP-binding domain), IPR005225 (Small GTP-binding protein domain), IPR009000 (Translation protein, beta-barrel domain), IPR009022 (Elongation factor G, III-V domain), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf05295g05010.1	sp|Q8KAE1|PGK_CHLTE	****	Phosphoglycerate kinase	IPR001576 (Phosphoglycerate kinase)	GO:0004618 (phosphoglycerate kinase activity), GO:0006096 (glycolytic process)
Niben101Scf03218g00011.1	AT4G32440.2	***-	Plant Tudor-like RNA-binding protein LENGTH=393	IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf02621g02014.1	sp|P92934|AAP6_ARATH	***-	Amino acid permease 6	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf07115g00024.1			Unknown protein		
Niben101Scf02929g05116.1	gb|ACX55016.1|	*-*-	pG1 protein [Bacillus amyloliquefaciens]		
Niben101Scf05183g03004.1	sp|P42285|SK2L2_HUMAN	*-*-	Superkiller viralicidic activity 2-like 2	IPR012961 (DSH, C-terminal)	GO:0005524 (ATP binding), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf01683g05014.1			Unknown protein		
Niben101Scf04490g00001.1	sp|P34931|HS71L_HUMAN	***-	Heat shock 70 kDa protein 1-like	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf02542g00004.1			Unknown protein		
Niben101Scf01661g01011.1	sp|B5VM59|UTP11_YEAS6	****	U3 small nucleolar RNA-associated protein 11	IPR007144 (Small-subunit processome, Utp11)	GO:0006364 (rRNA processing), GO:0032040 (small-subunit processome)
Niben101Scf06444g02004.1	sp|P60289|RPOC2_AMBTC	*-**	DNA-directed RNA polymerase subunit beta''	IPR007081 (RNA polymerase Rpb1, domain 5), IPR007083 (RNA polymerase Rpb1, domain 4)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf03455g07005.1	sp|Q9SIT7|PP151_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02042g00001.1	gb|KEH40671.1|	*-*-	pollen Ole e I family allergen [Medicago truncatula]	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf09100g04008.1	AT5G28530.1	***-	FAR1-related sequence 10 LENGTH=685	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type), IPR018289 (MULE transposase domain)	GO:0008270 (zinc ion binding)
Niben101Scf03110g05008.1	AT2G18600.1	***-	Ubiquitin-conjugating enzyme family protein LENGTH=185	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf01100g00007.1	ref|XP_002517504.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF45046.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05712g02004.1	sp|Q2N923|RL32_ERYLH	--**	50S ribosomal protein L32	IPR002677 (Ribosomal protein L32p), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf06767g00013.1	sp|Q8BGK6|YLAT2_MOUSE	--**	Y+L amino acid transporter 2	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0006865 (amino acid transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00069g15002.1	AT1G66430.1	****	pfkB-like carbohydrate kinase family protein LENGTH=384	IPR002139 (Ribokinase), IPR029056 (Ribokinase-like)	GO:0004747 (ribokinase activity), GO:0006014 (D-ribose metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf01848g05002.1	sp|Q2HFP1|IF4A_CHAGB	****	ATP-dependent RNA helicase eIF4A	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf13186g02008.1	AT5G14690.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=217		
Niben101Scf03439g01008.1	gb|ABA98161.2|	--*-	hAT family dimerisation domain containing protein [Oryza sativa Japonica Group]	IPR003656 (Zinc finger, BED-type)	GO:0003677 (DNA binding)
Niben101Scf13098g00013.1	sp|A2XUW1|CDKG2_ORYSI	*-**	Cyclin-dependent kinase G-2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12318g00006.1	sp|Q9FK53|NLAL2_ARATH	*-**	H/ACA ribonucleoprotein complex subunit 1-like protein 2	IPR007504 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1), IPR009000 (Translation protein, beta-barrel domain)	GO:0001522 (pseudouridine synthesis), GO:0031429 (box H/ACA snoRNP complex), GO:0042254 (ribosome biogenesis)
Niben101Scf01338g03017.1	ref|WP_011320066.1|	****	anion-transporting ATPase [Anabaena variabilis] ref|YP_323844.1| anion-transporting ATPase [Anabaena variabilis ATCC 29413] gb|ABA22949.1| arsenite efflux ATP-binding protein ArsA [Anabaena variabilis ATCC 29413]	IPR016300 (Arsenical pump ATPase, ArsA/GET3), IPR025723 (Anion-transporting ATPase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf01847g01001.1			Unknown protein		
Niben101Scf00681g01005.1	sp|O22348|TBA2_ELEIN	***-	Tubulin alpha-2 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf12159g00013.1	sp|Q84J50|HS177_ORYSJ	--*-	17.7 kDa class I heat shock protein		
Niben101Scf00082g05001.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00149g00008.1	AT5G01460.1	***-	LMBR1-like membrane protein LENGTH=509	IPR006876 (LMBR1-like membrane protein)	
Niben101Scf06933g02002.1	sp|Q3AW84|RS17_SYNS9	***-	30S ribosomal protein S17	IPR000266 (Ribosomal protein S17), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05306g03010.1	ref|WP_025946800.1|	***-	MULTISPECIES: Fe-S-cluster oxidoreductase [Prochlorococcus]	IPR005358 (Putative zinc- or iron-chelating domain containing protein)	
Niben101Scf03432g00021.1	AT5G11470.1	*-*-	bromo-adjacent homology (BAH) domain-containing protein LENGTH=757	IPR001025 (Bromo adjacent homology (BAH) domain)	GO:0003682 (chromatin binding)
Niben101Scf03300g00004.1	sp|A2AR02|PPIG_MOUSE	*-**	Peptidyl-prolyl cis-trans isomerase G	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR011990 (Tetratricopeptide-like helical domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0005515 (protein binding), GO:0006457 (protein folding)
Niben101Ctg14291g00001.1	sp|Q6BE25|CAS1_CUCPE	*-*-	Cycloartenol synthase	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0003824 (catalytic activity)
Niben101Scf01550g01016.1	sp|Q9W6I1|RBPMS_CHICK	--**	RNA-binding protein with multiple splicing	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR024888 (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'')	GO:0000166 (nucleotide binding), GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0017069 (snRNA binding)
Niben101Scf00949g01013.1	AT3G44750.1	*-*-	histone deacetylase 3 LENGTH=245		
Niben101Scf04675g09031.1	emb|CAC95126.1|	--*-	gag-pol polyprotein [Populus deltoides]		
Niben101Scf02330g00012.1	sp|P00965|GLNA3_PHAVU	****	Glutamine synthetase N-1	IPR008147 (Glutamine synthetase, beta-Grasp), IPR014746 (Glutamine synthetase/guanido kinase, catalytic domain), IPR027302 (Glutamine synthetase, N-terminal conserved site), IPR027303 (Glutamine synthetase, glycine-rich site)	GO:0003824 (catalytic activity), GO:0004356 (glutamate-ammonia ligase activity), GO:0006542 (glutamine biosynthetic process), GO:0006807 (nitrogen compound metabolic process)
Niben101Scf03414g03002.1			Unknown protein		
Niben101Scf28705g00002.1	sp|O42430|CP1A1_LIMLI	***-	Cytochrome P450 1A1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05300g00002.1	sp|Q6DJ87|CC90B_XENTR	***-	Coiled-coil domain-containing protein 90B, mitochondrial	IPR024461 (Protein of unknown function DUF1640)	
Niben101Scf08259g01001.1			Unknown protein		
Niben101Scf08026g02001.1	AT2G35330.1	***-	RING/U-box superfamily protein LENGTH=738	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00446g09003.1	AT3G18660.2	***-	plant glycogenin-like starch initiation protein 1 LENGTH=659	IPR002495 (Glycosyl transferase, family 8), IPR023210 (NADP-dependent oxidoreductase domain), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf06388g02007.1	sp|A2VDN6|SF3A1_BOVIN	--*-	Splicing factor 3A subunit 1		
Niben101Scf00397g00001.1	AT3G20050.1	***-	T-complex protein 1 alpha subunit LENGTH=545	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf06347g04035.1	sp|C1DFM2|DNAJ_AZOVD	--*-	Chaperone protein DnaJ	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf00465g07015.1	ref|XP_002514530.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF47636.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04040g09013.1	sp|Q01545|HSP22_IPONI	***-	18.8 kDa class II heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf03648g01010.1	sp|A4QL96|RPOC2_LEPVR	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf19315g00012.1	AT3G13600.1	***-	calmodulin-binding family protein LENGTH=605		
Niben101Scf08322g01004.1	sp|Q62829|PAK3_RAT	--*-	Serine/threonine-protein kinase PAK 3	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00470g05003.1	emb|CDX83374.1|	*-*-	BnaA03g21320D [Brassica napus]		
Niben101Scf01073g04022.1	sp|P33611|DPOA2_MOUSE	*-**	DNA polymerase alpha subunit B	IPR007185 (DNA polymerase alpha/epsilon, subunit B), IPR013627 (DNA polymerase alpha, subunit B N-terminal)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication)
Niben101Scf06120g00013.1	sp|Q41249|PORA_CUCSA	****	Protochlorophyllide reductase, chloroplastic	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf04114g00043.1	ref|YP_006291803.1|	*-*-	orf34 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81172.1| orf34 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf00087g03023.1	AT2G24610.1	****	cyclic nucleotide-gated channel 14 LENGTH=726	IPR005821 (Ion transport domain), IPR014710 (RmlC-like jelly roll fold)	GO:0005216 (ion channel activity), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03221g02010.1	sp|P81396|MYB40_ANTMA	*-*-	Myb-related protein 340	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04879g07002.1	sp|Q9CAM8|PP100_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01433g08031.1	sp|Q9SIV5|C3H19_ARATH	*-**	Zinc finger CCCH domain-containing protein 19	IPR000571 (Zinc finger, CCCH-type), IPR003121 (SWIB/MDM2 domain), IPR003169 (GYF), IPR004343 (Plus-3), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006352 (DNA-templated transcription, initiation), GO:0008270 (zinc ion binding), GO:0016570 (histone modification), GO:0046872 (metal ion binding)
Niben101Scf19480g00002.1	ref|NP_001247761.1|	****	U3 small nucleolar RNA-associated protein 15 homolog [Macaca mulatta]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR018983 (U3 small nucleolar RNA-associated protein 15, C-terminal), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding), GO:0005730 (nucleolus), GO:0006364 (rRNA processing)
Niben101Scf03830g03004.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf02235g04026.1	sp|A0KMI5|DNAJ_AERHH	--*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf01991g05012.1	sp|P26573|RBS8_NICPL	***-	Ribulose bisphosphate carboxylase small chain 8B, chloroplastic	IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain)	
Niben101Scf06361g03003.1	sp|Q9UKV3|ACINU_HUMAN	*-*-	Apoptotic chromatin condensation inducer in the nucleus	IPR003034 (SAP domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf06388g00001.1	AT3G56840.1	****	FAD-dependent oxidoreductase family protein LENGTH=483	IPR006076 (FAD dependent oxidoreductase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00291g02025.1	sp|Q98EV6|ATPA_RHILO	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf03545g00017.1	AT1G13790.1	*-*-	XH/XS domain-containing protein LENGTH=736	IPR005379 (Uncharacterised domain XH)	
Niben101Scf04003g03003.1	emb|CAE01801.2|	***-	product [Oryza sativa Japonica Group]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf02825g00018.1	emb|CDY29863.1|	***-	BnaA03g48840D [Brassica napus]	IPR007789 (Protein of unknown function DUF688)	
Niben101Scf11995g00002.1	AT3G08030.1	***-	Protein of unknown function, DUF642 LENGTH=365	IPR006946 (Protein of unknown function DUF642), IPR008979 (Galactose-binding domain-like)	
Niben101Scf14566g01001.1	sp|A8MQA3|PP330_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03595g19031.1	AT1G65790.1	*-**	receptor kinase 1 LENGTH=843	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf20953g00013.1	emb|CDY15168.1|	*-*-	BnaC05g00470D [Brassica napus]	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf03367g01008.1	sp|Q9FI80|PP425_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02023g02007.1	AT4G08685.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=159	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf05750g00019.1	sp|Q9MU30|ATPB_MYRFG	*-**	ATP synthase subunit beta, chloroplastic	IPR001469 (ATPase, F1 complex, delta/epsilon subunit), IPR005722 (ATPase, F1 complex, beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf03963g01002.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01922g06018.1	sp|O49313|NDADB_ARATH	***-	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B	IPR009346 (GRIM-19)	
Niben101Scf14714g00018.1	sp|Q8RY82|FB121_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00837g10019.1			Unknown protein		
Niben101Scf02902g04007.1			Unknown protein		
Niben101Scf01623g11002.1	AT4G02120.1	*-**	CTP synthase family protein LENGTH=556	IPR004468 (CTP synthase), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003883 (CTP synthase activity), GO:0006221 (pyrimidine nucleotide biosynthetic process)
Niben101Scf04131g01024.1	AT4G32700.2	*-**	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding LENGTH=2154	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf02135g00004.1	sp|Q96AY4|TTC28_HUMAN	*-*-	Tetratricopeptide repeat protein 28	IPR003590 (Leucine-rich repeat, ribonuclease inhibitor subtype), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00067g02006.1	gb|KEH20808.1|	***-	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]		
Niben101Scf03953g03019.1	sp|Q9SYZ7|U496A_ARATH	***-	UPF0496 protein	IPR007749 (Protein of unknown function DUF677)	
Niben101Scf03872g02007.1	sp|Q9ZUE9|PP149_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04655g04028.1	sp|F4HQX1|JAL3_ARATH	***-	Jacalin-related lectin 3	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf11715g03003.1	sp|Q1XHU0|TRI39_PANTR	--*-	E3 ubiquitin-protein ligase TRIM39	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01086g00015.1	ref|XP_003621359.1|	*-*-	Ripening-related protein [Medicago truncatula]	IPR014733 (Barwin-like endoglucanase)	
Niben101Scf04368g00016.1	sp|A6LR41|SSRP_CLOB8	--*-	SsrA-binding protein		
Niben101Scf02085g23010.1	sp|Q9CR40|KLH28_MOUSE	*-*-	Kelch-like protein 28	IPR013989 (Development/cell death domain), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf04362g00006.1	gb|KEH44269.1|	*-*-	MFS transporter [Medicago truncatula]	IPR010658 (Nodulin-like)	
Niben101Scf06999g01002.1	sp|O04375|2A5A_ARATH	****	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf02110g00028.1	AT5G45280.2	***-	Pectinacetylesterase family protein LENGTH=391	IPR004963 (Protein notum homologue)	
Niben101Scf10927g00023.1	sp|Q54M20|TTC4_DICDI	***-	Tetratricopeptide repeat protein 4 homolog	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06739g05004.1	AT2G05940.1	****	Protein kinase superfamily protein LENGTH=462	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02614g00010.1	sp|P93847|RL10_SOLME	***-	60S ribosomal protein L10	IPR001197 (Ribosomal protein L10e), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00546g02002.1			Unknown protein		
Niben101Scf03021g01006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04044g00007.1	sp|P14953|TRPE_CLOTM	****	Anthranilate synthase component 1	IPR019999 (Anthranilate synthase component I - like)	GO:0000162 (tryptophan biosynthetic process), GO:0004049 (anthranilate synthase activity), GO:0009058 (biosynthetic process), GO:0016833 (oxo-acid-lyase activity)
Niben101Scf15244g00003.1	AT3G52260.3	*-**	Pseudouridine synthase family protein LENGTH=416	IPR020103 (Pseudouridine synthase, catalytic domain), IPR028766 (RNA pseudouridine synthase 5)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf01328g01013.1	AT5G48330.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=455	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf03671g00015.1	AT4G39210.1	****	Glucose-1-phosphate adenylyltransferase family protein LENGTH=521	IPR011831 (Glucose-1-phosphate adenylyltransferase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005978 (glycogen biosynthetic process), GO:0008878 (glucose-1-phosphate adenylyltransferase activity), GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf01463g07019.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf01119g03004.1	AT5G45530.1	*-*-	Protein of unknown function (DUF594) LENGTH=798	IPR007658 (Protein of unknown function DUF594), IPR025315 (Domain of unknown function DUF4220)	
Niben101Scf09696g01108.1	sp|Q49KT4|RK2_EUCGG	*-**	50S ribosomal protein L2, chloroplastic	IPR002171 (Ribosomal protein L2)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit), GO:0016740 (transferase activity)
Niben101Scf02085g08002.1	sp|Q39265|ZFP6_ARATH	--*-	Zinc finger protein 6	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01687g01009.1	sp|O48850|VA725_ARATH	****	Vesicle-associated membrane protein 725	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf08211g02005.1	sp|Q67YC0|PPSP1_ARATH	--*-	Inorganic pyrophosphatase 1		
Niben101Scf00215g01001.1	AT4G18590.1	*-**	Nucleic acid-binding, OB-fold-like protein LENGTH=106	IPR013970 (Replication factor A protein 3)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0006310 (DNA recombination)
Niben101Scf05146g08004.1	sp|A9KGL7|UBIG_COXBN	--**	Ubiquinone biosynthesis O-methyltransferase	IPR022238 (Uncharacterised protein family, methyltransferase, Williams-Beuren syndrome), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf04437g00011.1	AT4G31990.3	***-	aspartate aminotransferase 5 LENGTH=462	IPR000796 (Aspartate/other aminotransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf08921g01009.1	emb|CDX74633.1|	--*-	BnaA04g07560D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf05764g05019.1	sp|Q9SCV9|BGAL3_ARATH	***-	Beta-galactosidase 3	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf00446g02001.1	ref|XP_003588403.1|	***-	S1 ribosomal protein [Medicago truncatula]		
Niben101Scf08670g00022.1	AT4G18470.1	***-	negative regulator of systemic acquired resistance (SNI1) LENGTH=432		
Niben101Scf02929g00074.1	ATMG00660.1	***-	hypothetical protein chrM:190104-190553 REVERSE LENGTH=149		
Niben101Scf03930g01017.1	emb|CDX87918.1|	***-	BnaC06g09800D [Brassica napus]		
Niben101Scf01326g11024.1	AT5G40030.1	****	Protein kinase superfamily protein LENGTH=499	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07042g01019.1	emb|CDY69669.1|	***-	BnaA10g29050D [Brassica napus]		
Niben101Scf05025g11023.1			Unknown protein		
Niben101Scf00402g02003.1	gb|EMS19055.1|	*-**	Rab GTPase activator [Rhodosporidium toruloides NP11] emb|CDR44870.1| RHTO0S10e02190g1_1 [Rhodosporidium toruloides]	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf09708g00003.1	emb|CDY00826.1|	***-	BnaCnng00260D [Brassica napus]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf04283g02009.1	AT3G63090.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=404	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf06133g00003.1			Unknown protein	IPR009457 (Domain of unknown function DUF1084)	
Niben101Scf13399g00015.1			Unknown protein		
Niben101Scf02239g06008.1	sp|Q9NUV9|GIMA4_HUMAN	***-	GTPase IMAP family member 4	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf02360g04015.1	ref|XP_007039066.1|	*-*-	Gamma-irradiation and mitomycin c induced 1, putative isoform 4 [Theobroma cacao] gb|EOY23567.1| Gamma-irradiation and mitomycin c induced 1, putative isoform 4 [Theobroma cacao]		
Niben101Scf03035g00016.1	AT2G33845.1	***-	Nucleic acid-binding, OB-fold-like protein LENGTH=182	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf08044g00005.1	ref|NP_190526.1|	--*-	protein RESPONSE TO LOW SULFUR 3 [Arabidopsis thaliana] emb|CAB62461.1| hypothetical protein [Arabidopsis thaliana] dbj|BAC42759.1| unknown protein [Arabidopsis thaliana] gb|AAP04108.1| unknown protein [Arabidopsis thaliana] gb|AEE78558.1| response to low sulfur 3 protein [Arabidopsis thaliana]		
Niben101Scf29015g00005.1	sp|P93531|C71D7_SOLCH	*-*-	Cytochrome P450 71D7		
Niben101Scf01077g02010.1	AT3G59660.1	***-	C2 domain-containing protein / GRAM domain-containing protein LENGTH=594	IPR000008 (C2 domain), IPR004182 (GRAM domain)	GO:0005515 (protein binding)
Niben101Scf00135g02003.1	AT5G18050.1	***-	SAUR-like auxin-responsive protein family LENGTH=90	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01428g01006.1	gb|KEH42700.1|	***-	ATBET12, putative [Medicago truncatula]		
Niben101Scf00463g01008.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03779g08016.1	sp|Q54S59|WDR61_DICDI	***-	WD repeat-containing protein 61 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04328g00022.1	sp|Q04JT6|RS21_STRP2	--*-	30S ribosomal protein S21	IPR001911 (Ribosomal protein S21)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01182g06004.1	sp|B9S8Z3|CASP4_RICCO	***-	Casparian strip membrane protein 4	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf13521g00007.1	ref|XP_504219.1|	--*-	YALI0E21153p [Yarrowia lipolytica] emb|CAG79814.1| YALI0E21153p [Yarrowia lipolytica CLIB122]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf10215g00012.1	sp|Q9LD18|POT4_ARATH	*-**	Potassium transporter 4	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf06942g02033.1	sp|Q56YT0|LAC3_ARATH	***-	Laccase-3	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08987g00011.1	sp|I1N462|SBT1_SOYBN	--*-	Subtilisin-like protease		
Niben101Scf23305g01002.1	sp|Q9FHA6|RLF34_ARATH	***-	Protein RALF-like 34	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf04901g00018.1	sp|Q9ZUF7|LOR6_ARATH	***-	Protein LURP-one-related 6	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf03424g00017.1	gb|AFX66971.1|	****	3-beta-hydroxy-delta5-steroid dehydrogenase [Solanum tuberosum]	IPR016040 (NAD(P)-binding domain), IPR028110 (Protein of unknown function DUF4499)	GO:0003854 (3-beta-hydroxy-delta5-steroid dehydrogenase activity), GO:0006694 (steroid biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf03993g03011.1	sp|Q9JHT5|AMMR1_MOUSE	***-	AMME syndrome candidate gene 1 protein homolog	IPR002733 (AMMECR1 domain), IPR023473 (AMMECR1), IPR027485 (AMMECR1, N-terminal)	
Niben101Scf00239g09013.1			Unknown protein		
Niben101Scf01974g00017.1			Unknown protein		
Niben101Scf08835g00007.1	AT1G22400.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00725g02009.1	sp|Q93ZH0|LYM1_ARATH	*-*-	LysM domain-containing GPI-anchored protein 1	IPR018392 (LysM domain)	
Niben101Scf07541g00014.1			Unknown protein		
Niben101Scf12497g00003.1	sp|Q9ZS51|PMP22_ARATH	--*-	Peroxisomal membrane protein PMP22		
Niben101Scf05391g01015.1	sp|Q8LHP0|ELOF1_ORYSJ	***-	Transcription elongation factor 1 homolog	IPR007808 (Transcription elongation factor 1)	
Niben101Scf03871g04002.1	sp|A2XHU0|SPX5_ORYSI	*-*-	SPX domain-containing protein 5	IPR004331 (SPX, N-terminal)	
Niben101Scf03446g02001.1	ref|XP_002532611.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF29777.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02349g03008.1	sp|O04795|PERA_IPOBA	--*-	Anionic peroxidase		
Niben101Scf01677g06009.1	sp|B0G159|MCFC_DICDI	*-*-	Mitochondrial substrate carrier family protein C	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf00854g01009.1			Unknown protein		
Niben101Scf07060g04006.1	sp|Q8LPR5|TCP4_ARATH	***-	Transcription factor TCP4	IPR005333 (Transcription factor, TCP)	
Niben101Scf03702g00007.1	sp|A8A2L0|FADJ_ECOHS	****	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0003857 (3-hydroxyacyl-CoA dehydrogenase activity), GO:0006631 (fatty acid metabolic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00069g12017.1	AT5G26780.3	****	serine hydroxymethyltransferase 2 LENGTH=533	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01063g11028.1	ref|NP_001190042.1|	--*-	protein RESPONSE TO LOW SULFUR 1 [Arabidopsis thaliana] gb|AEE78560.1| response to low sulfur 1 protein [Arabidopsis thaliana]		
Niben101Scf01628g00041.1	sp|Q04716|RT03_PETHY	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf03574g00029.1	sp|Q9CWK3|CD2B2_MOUSE	*-*-	CD2 antigen cytoplasmic tail-binding protein 2		
Niben101Scf07576g00028.1	gb|KEH39458.1|	--*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf10228g01024.1	sp|O24011|VATL_SOLLC	****	V-type proton ATPase 16 kDa proteolipid subunit	IPR000245 (V-ATPase proteolipid subunit), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf24238g00008.1	ref|NP_001046594.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf01320g02009.1	AT1G65920.1	*-*-	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain LENGTH=1006	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0046872 (metal ion binding)
Niben101Scf05969g01008.1	sp|Q2JIL3|RL6_SYNJB	*-*-	50S ribosomal protein L6	IPR000702 (Ribosomal protein L6)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf06529g03010.1	AT4G10940.1	*-*-	RING/U-box protein LENGTH=192		
Niben101Scf00309g00001.1	gb|KEH41061.1|	***-	auxin canalization protein [Medicago truncatula]	IPR008546 (Domain of unknown function DUF828), IPR013666 (Pleckstrin-like, plant)	
Niben101Ctg03632g00004.1	AT5G35630.1	*-*-	glutamine synthetase 2 LENGTH=430		
Niben101Scf03839g07001.1	sp|Q16G71|MED10_AEDAE	*-**	Mediator of RNA polymerase II transcription subunit 10	IPR019145 (Mediator complex, subunit Med10)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf01752g08012.1	sp|Q7F9K4|BGL10_ORYSJ	*-*-	Beta-glucosidase 10	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00635g07006.1	AT1G78240.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=684	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf01711g02005.1	AT1G58025.2	*-*-	DNA-binding bromodomain-containing protein LENGTH=582		
Niben101Ctg16304g00001.1	AT1G70680.1	***-	Caleosin-related family protein LENGTH=192	IPR007736 (Caleosin), IPR011992 (EF-hand domain pair)	
Niben101Scf02433g02006.1	sp|Q0KL01|UBX2B_MOUSE	*-*-	UBX domain-containing protein 2B	IPR012989 (SEP domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf01774g02016.1	AT3G49800.1	***-	BSD domain-containing protein LENGTH=428	IPR005607 (BSD)	
Niben101Scf03679g04002.1	sp|O04937|DHEA_NICPL	***-	Glutamate dehydrogenase A	IPR006095 (Glutamate/phenylalanine/leucine/valine dehydrogenase), IPR016040 (NAD(P)-binding domain)	GO:0006520 (cellular amino acid metabolic process), GO:0016491 (oxidoreductase activity), GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00039g01002.1	sp|Q5W9E7|MUS81_ARATH	***-	Crossover junction endonuclease MUS81	IPR011335 (Restriction endonuclease  type II-like)	GO:0003677 (DNA binding), GO:0004518 (nuclease activity), GO:0006259 (DNA metabolic process)
Niben101Scf11241g00003.1	sp|Q9M1W4|HMT2_ARATH	****	Homocysteine S-methyltransferase 2	IPR003726 (Homocysteine S-methyltransferase)	GO:0008898 (S-adenosylmethionine-homocysteine S-methyltransferase activity)
Niben101Scf02002g04006.1	sp|Q9SFC6|GDIR_ARATH	****	Rho GDP-dissociation inhibitor 1	IPR000406 (RHO protein GDP dissociation inhibitor), IPR014756 (Immunoglobulin E-set)	GO:0005094 (Rho GDP-dissociation inhibitor activity), GO:0005737 (cytoplasm)
Niben101Scf09997g00023.1	sp|P28011|AAT1_MEDSA	***-	Aspartate aminotransferase 1	IPR000796 (Aspartate/other aminotransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01628g00043.1	gb|AFD29780.1|	*-**	DNA polymerase (mitochondrion) [Silene vulgaris]	IPR004868 (DNA-directed DNA polymerase, family B, mitochondria/virus), IPR012337 (Ribonuclease H-like domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf09230g02002.1	gb|AES65140.2|	*-*-	VQ motif protein [Medicago truncatula]	IPR008889 (VQ)	
Niben101Scf02832g04004.1	sp|Q94C77|RPKL_ARATH	****	Receptor protein kinase-like protein	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05025g07012.1	AT2G41050.1	*-*-	PQ-loop repeat family protein / transmembrane family protein LENGTH=376		
Niben101Scf00712g03003.1	sp|Q9FLJ2|NC100_ARATH	*-*-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf25866g00004.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor)	
Niben101Scf02583g02005.1	ref|XP_002518180.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF44313.1| conserved hypothetical protein [Ricinus communis]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf00555g00003.1	sp|B0BLT0|ZN593_XENTR	****	Zinc finger protein 593	IPR003604 (Zinc finger, U1-type), IPR007087 (Zinc finger, C2H2), IPR022755 (Zinc finger, double-stranded RNA binding)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf01596g01007.1	sp|Q9LE73|NUDT4_ARATH	--*-	Nudix hydrolase 4		
Niben101Scf05368g03011.1	AT5G02160.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=129	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf02199g00002.1	emb|CDX87797.1|	***-	BnaC02g31520D [Brassica napus]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf04360g00001.1	sp|B7L6H9|YDIU_ECO55	***-	UPF0061 protein YdiU	IPR003846 (Uncharacterised protein family UPF0061)	
Niben101Scf04905g07006.1	ref|NP_001288865.1|	****	trihelix transcription factor GT-1-like [Brassica rapa] gb|ABV89646.1| DNA binding protein GT-1 [Brassica rapa]	IPR009057 (Homeodomain-like), IPR027775 (C2H2- zinc finger protein family)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf00054g00003.1	gb|KEH25555.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf01749g01001.1	ref|WP_009634204.1|	****	outer membrane protein/protective antigen OMA87 [Synechocystis sp. PCC 7509]	IPR000184 (Bacterial surface antigen (D15)), IPR010827 (Surface antigen variable number)	GO:0019867 (outer membrane)
Niben101Scf19062g00010.1	sp|Q7ZUM8|UBP44_DANRE	*-*-	Ubiquitin carboxyl-terminal hydrolase 44	IPR000286 (Histone deacetylase superfamily), IPR001607 (Zinc finger, UBP-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf01909g01001.1	sp|Q94K41|SDR3B_ARATH	****	Short-chain dehydrogenase reductase 3b	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02537g08001.1	AT1G22400.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf15720g00011.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf21178g00001.1	sp|Q8S8V2|YCF2A_ATRBE	*-*-	Protein Ycf2 A	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf06738g00001.1	ref|XP_002308022.1|	****	GTP-binding family protein [Populus trichocarpa] gb|EEE91545.1| GTP-binding family protein [Populus trichocarpa]	IPR006073 (GTP binding domain), IPR023179 (GTP-binding protein, orthogonal bundle domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf15747g00014.1	sp|Q6FIL3|HAS1_CANGA	****	ATP-dependent RNA helicase HAS1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf05444g07031.1	ref|XP_007009838.1|	*-*-	Zn-dependent exopeptidases superfamily protein isoform 5 [Theobroma cacao] gb|EOY18648.1| Zn-dependent exopeptidases superfamily protein isoform 5 [Theobroma cacao]		
Niben101Scf03377g03004.1	sp|Q8L8A5|GIF1_ARATH	***-	GRF1-interacting factor 1	IPR007726 (SS18 family)	
Niben101Scf05523g00001.1			Unknown protein		
Niben101Scf08926g03013.1	emb|CDY63845.1|	*-*-	BnaCnng42740D [Brassica napus]		
Niben101Scf00129g00006.1	sp|Q04716|RT03_PETHY	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf00218g01008.1	AT4G18210.1	***-	purine permease 10 LENGTH=390	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf00725g03012.1	sp|Q8GXJ1|HDA15_ARATH	***-	Histone deacetylase 15	IPR000286 (Histone deacetylase superfamily), IPR001876 (Zinc finger, RanBP2-type), IPR023801 (Histone deacetylase domain)	GO:0008270 (zinc ion binding)
Niben101Scf01746g03003.1	sp|P81395|MYB30_ANTMA	*-*-	Myb-related protein 330	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00314g01006.1	ref|WP_026731645.1|	*-*-	alpha/beta hydrolase [Fischerella sp. PCC 9605]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01998g02006.1	AT5G11950.1	***-	Putative lysine decarboxylase family protein LENGTH=216	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf00135g02005.1	AT4G38840.1	***-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf05813g09011.1	sp|O94804|STK10_HUMAN	*-**	Serine/threonine-protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01036g03021.1	sp|P22682|CBL_MOUSE	--*-	E3 ubiquitin-protein ligase CBL	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05073g02009.1	ref|YP_001152267.1|	*-*-	ORF65d [Pinus koraiensis] gb|ABP35508.1| ORF65d [Pinus koraiensis]		
Niben101Ctg13474g00003.1	AT1G23240.1	*-*-	Caleosin-related family protein LENGTH=210	IPR007736 (Caleosin)	
Niben101Ctg15770g00001.1	sp|Q93ZQ5|SPXM3_ARATH	****	SPX domain-containing membrane protein	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02515g00002.1	sp|Q6ERS4|CIPKG_ORYSJ	****	CBL-interacting protein kinase 16	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf20973g00004.1			Unknown protein		
Niben101Scf11657g00012.1	sp|Q620W3|EFR3_CAEBR	*-*-	Protein EFR3 homolog	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf18096g00002.1	ref|NP_193381.1|	****	in [Arabidopsis thaliana] gb|AAO42160.1| putative membrane transporter [Arabidopsis thaliana] gb|AAO64127.1| putative membrane transporter [Arabidopsis thaliana] emb|CAJ00306.1| inositol transporter 4 [Arabidopsis thaliana] gb|AEE83759.1| inositol transporter 4 [Arabidopsis thaliana]	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf15817g01015.1	sp|Q07262|1A1C_TOBAC	***-	1-aminocyclopropane-1-carboxylate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00711g03006.1	sp|B5VM59|UTP11_YEAS6	*-**	U3 small nucleolar RNA-associated protein 11	IPR007144 (Small-subunit processome, Utp11)	GO:0006364 (rRNA processing), GO:0032040 (small-subunit processome)
Niben101Scf06387g00002.1	gb|AES70969.2|	***-	calmodulin-binding heat-shock protein [Medicago truncatula]	IPR005592 (Mono-/di-acylglycerol lipase, N-terminal), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0016042 (lipid catabolic process)
Niben101Scf03850g02023.1			Unknown protein		
Niben101Scf02494g10012.1	sp|Q9FHM7|HIR4_ARATH	***-	Hypersensitive-induced response protein 4	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf02384g00004.1	sp|A5CZ78|HIS8_PELTS	*-**	Histidinol-phosphate aminotransferase	IPR021178 (Tyrosine transaminase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00691g03001.1	sp|P50872|TRPE_AZOBR	*-*-	Anthranilate synthase	IPR029062 (Class I glutamine amidotransferase-like)	GO:0008152 (metabolic process)
Niben101Scf00154g04003.1	ref|XP_007026670.1|	*-*-	Transducin family protein / WD-40 repeat family protein, putative isoform 2 [Theobroma cacao] gb|EOY07172.1| Transducin family protein / WD-40 repeat family protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf04368g00017.1	AT1G07730.2	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=389	IPR004265 (Plant disease resistance response protein)	
Niben101Scf06407g00010.1	sp|O43290|SNUT1_HUMAN	*-*-	U4/U6.U5 tri-snRNP-associated protein 1	IPR005011 (SART-1 protein)	
Niben101Scf05584g01004.1	sp|Q332U5|RPOA_LACSA	*-**	DNA-directed RNA polymerase subunit alpha	IPR002541 (Cytochrome c assembly protein), IPR011260 (RNA polymerase, alpha subunit, C-terminal)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf00068g00014.1	sp|C7N914|FTSH_LEPBD	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR007330 (MIT), IPR015415 (Vps4 oligomerisation, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02057g01015.1	AT5G10750.1	***-	Protein of unknown function (DUF1336) LENGTH=302	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf04131g01023.1	sp|Q6P4T2|U520_MOUSE	*-*-	U5 small nuclear ribonucleoprotein 200 kDa helicase		
Niben101Scf05712g03007.1	sp|Q8LK93|PP145_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR001568 (Ribonuclease T2-like)	GO:0003723 (RNA binding), GO:0033897 (ribonuclease T2 activity)
Niben101Scf02990g09005.1	AT4G37790.1	***-	Homeobox-leucine zipper protein family LENGTH=278	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00271g01025.1	sp|P48724|IF5_PHAVU	****	Eukaryotic translation initiation factor 5	IPR002735 (Translation initiation factor IF2/IF5), IPR016024 (Armadillo-type fold)	GO:0003743 (translation initiation factor activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0006413 (translational initiation)
Niben101Scf01124g12003.1	AT1G35510.1	***-	O-fucosyltransferase family protein LENGTH=568	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Ctg12493g00001.1	sp|P02582|ACT1_MAIZE	*-*-	Actin-1	IPR004000 (Actin family)	
Niben101Scf04663g02010.1	sp|O22815|MLO5_ARATH	***-	MLO-like protein 5	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf03191g03009.1	sp|Q9ZR37|DUS1_ARATH	****	Dual specificity protein phosphatase 1	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf15657g02028.1	sp|Q8W4C3|PARNL_ARATH	***-	Poly(A)-specific ribonuclease PARN-like	IPR006941 (Ribonuclease CAF1), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Scf01090g00001.1	sp|Q8LDC8|ERF92_ARATH	*-**	Ethylene-responsive transcription factor 1B	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00229g05009.1	ref|XP_002517764.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF44571.1| conserved hypothetical protein [Ricinus communis]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf00702g00054.1	sp|B8ELG0|RL2_METSB	*-*-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04841g00004.1			Unknown protein		
Niben101Scf07590g01012.1			Unknown protein		
Niben101Scf01213g00003.1	emb|CDY05485.1|	***-	BnaA02g32060D [Brassica napus]		
Niben101Scf07278g00012.1	AT4G34030.1	***-	3-methylcrotonyl-CoA carboxylase LENGTH=587	IPR029045 (ClpP/crotonase-like domain)	GO:0016874 (ligase activity)
Niben101Scf02669g05003.1			Unknown protein		
Niben101Scf06976g07016.1	sp|Q9LUJ2|PP249_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR003656 (Zinc finger, BED-type), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding)
Niben101Scf01009g01007.1	AT5G18520.1	***-	Lung seven transmembrane receptor family protein LENGTH=440	IPR009637 (Transmembrane receptor, eukaryota)	GO:0016021 (integral component of membrane)
Niben101Scf11356g00003.1	AT3G07400.1	*-*-	lipase class 3 family protein LENGTH=1003	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf09696g01107.1	sp|Q7FNR4|RK23_ATRBE	*-*-	50S ribosomal protein L23, chloroplastic	IPR002541 (Cytochrome c assembly protein), IPR003557 (Cytochrome c-type biogenesis protein CcmC), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf06413g02021.1			Unknown protein		
Niben101Scf02949g03001.1	sp|Q5R5C8|TCPH_PONAB	****	T-complex protein 1 subunit eta	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf02319g03015.1	ref|XP_003588536.1|	--*-	Rhomboid family protein (ISS) [Medicago truncatula]		
Niben101Scf09849g00003.1	ref|XP_007029896.1|	*-*-	Far1-related sequence 3 [Theobroma cacao] gb|EOY10398.1| Far1-related sequence 3 [Theobroma cacao]		
Niben101Scf02426g02039.1	sp|Q5VWI1|TCRGL_HUMAN	--*-	Transcription elongation regulator 1-like protein	IPR002713 (FF domain)	
Niben101Scf09444g00007.1	gb|KEH43211.1|	***-	heparan-alpha-glucosaminide N-acetyltransferase-like protein [Medicago truncatula]	IPR012429 (Protein of unknown function DUF1624)	
Niben101Scf11325g00012.1	AT2G41600.5	****	Mitochondrial glycoprotein family protein LENGTH=220	IPR003428 (Mitochondrial glycoprotein)	GO:0005759 (mitochondrial matrix)
Niben101Scf06684g03009.1	sp|O04616|CUT1A_ARATH	*-*-	Protein CURVATURE THYLAKOID 1A, chloroplastic	IPR025564 (Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain)	
Niben101Scf38556g00005.1	AT3G53940.1	*-*-	Mitochondrial substrate carrier family protein LENGTH=365	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf06626g02007.1	sp|Q9SJ41|C3H18_ARATH	***-	Zinc finger CCCH domain-containing protein 18	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR025605 (OST-HTH/LOTUS domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf04158g00001.1	AT5G19670.1	*-*-	Exostosin family protein LENGTH=610	IPR004263 (Exostosin-like)	
Niben101Scf04675g09032.1	sp|P49044|VPE_VICSA	***-	Vacuolar-processing enzyme	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00862g02050.1	sp|Q06445|CYTI_VIGUN	****	Cysteine proteinase inhibitor	IPR000010 (Proteinase inhibitor I25, cystatin), IPR027214 (Cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf06388g00003.1			Unknown protein		
Niben101Scf12987g00017.1	sp|Q5SPX3|RN215_MOUSE	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00485g02021.1			Unknown protein		
Niben101Scf02108g01028.1	gb|KGH23290.1|	***-	phosphoesterase [Comamonas testosteroni]		
Niben101Scf00121g00019.1	sp|Q8SRB0|GBLP_ENCCU	****	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf09547g02001.1	sp|Q43358|VCL_THECC	*-*-	Vicilin	IPR006792 (Vicilin, N-terminal), IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf15533g00008.1	sp|Q9W517|WAPL_DROME	*-*-	Protein wings apart-like	IPR016024 (Armadillo-type fold), IPR022771 (Wings apart-like protein)	GO:0005488 (binding)
Niben101Scf08679g04009.1	emb|CDX98744.1|	***-	BnaA03g45290D [Brassica napus]		
Niben101Scf02581g05005.1	sp|P0DH90|FRIGI_ARATH	*-*-	Protein FRIGIDA	IPR012474 (Frigida-like)	
Niben101Scf08586g00003.1			Unknown protein		
Niben101Scf06263g01004.1	AT4G35640.1	****	serine acetyltransferase 3;2 LENGTH=355	IPR005881 (Serine O-acetyltransferase)	GO:0005737 (cytoplasm), GO:0006535 (cysteine biosynthetic process from serine), GO:0009001 (serine O-acetyltransferase activity), GO:0016740 (transferase activity)
Niben101Scf05151g03008.1	sp|A8MR93|ALG12_ARATH	*-*-	Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase	IPR005599 (GPI mannosyltransferase)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf00570g03009.1	gb|AES67906.2|	*-*-	CHUP1, putative [Medicago truncatula]		
Niben101Scf04276g01006.1	AT1G56310.1	***-	Polynucleotidyl transferase, ribonuclease H-like superfamily protein LENGTH=589	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf05449g02001.1	sp|Q9SU94|ANM11_ARATH	--*-	Protein arginine N-methyltransferase 1.1		
Niben101Scf05948g03020.1	sp|Q9LVQ5|PP432_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07413g02005.1	AT2G39970.1	***-	Mitochondrial substrate carrier family protein LENGTH=331	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf13926g00005.1	sp|O04899|CAMT5_TOBAC	****	Caffeoyl-CoA O-methyltransferase 5	IPR002935 (O-methyltransferase, family 3), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008171 (O-methyltransferase activity)
Niben101Scf00927g13024.1	sp|Q6P1L6|ZN343_HUMAN	--*-	Zinc finger protein 343	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00090g08010.1	sp|P17859|AMYA_VIGMU	****	Alpha-amylase	IPR015902 (Glycoside hydrolase, family 13)	GO:0003824 (catalytic activity), GO:0004556 (alpha-amylase activity), GO:0005509 (calcium ion binding), GO:0005975 (carbohydrate metabolic process), GO:0043169 (cation binding)
Niben101Scf01808g00012.1	AT1G24090.1	***-	RNase H family protein LENGTH=353	IPR011320 (Ribonuclease H1, N-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf08566g03006.1	ref|XP_002527458.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF34950.1| conserved hypothetical protein [Ricinus communis]	IPR008502 (Prolamin-like domain)	
Niben101Scf13047g00005.1	AT1G08320.1	****	bZIP transcription factor family protein LENGTH=481	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01369g05022.1	AT1G42960.1	*-*-	expressed protein localized to the inner membrane of the chloroplast. LENGTH=168		
Niben101Scf01985g03016.1	AT2G32910.1	*-*-	DCD (Development and Cell Death) domain protein LENGTH=691	IPR013989 (Development/cell death domain)	
Niben101Scf03661g00003.1			Unknown protein		
Niben101Scf02915g02001.1	sp|B7L0T5|RL6_METC4	***-	50S ribosomal protein L6	IPR000702 (Ribosomal protein L6)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf00116g02008.1	AT4G05110.1	****	equilibrative nucleoside transporter 6 LENGTH=418	IPR002259 (Equilibrative nucleoside transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005337 (nucleoside transmembrane transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf02477g00022.1	sp|O82205|R15A2_ARATH	***-	40S ribosomal protein S15a-2	IPR000630 (Ribosomal protein S8)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04922g00004.1	AT3G58480.1	***-	calmodulin-binding family protein LENGTH=575		
Niben101Scf10062g00008.1	sp|Q6LA43|APRR2_ARATH	***-	Two-component response regulator-like APRR2	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf10333g00018.1	ref|XP_007021499.1|	--*-	Nbs-lrr resistance protein [Theobroma cacao] gb|EOY13024.1| Nbs-lrr resistance protein [Theobroma cacao]		
Niben101Scf01936g05001.1	sp|P31826|YDDA_ECOLI	****	Inner membrane ABC transporter ATP-binding protein YddA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf03570g01007.1	AT4G01790.1	***-	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein LENGTH=167	IPR029064 (50S ribosomal protein L30e-like)	
Niben101Scf00090g13005.1			Unknown protein		
Niben101Scf06388g01026.1	sp|Q9M2Y7|PP274_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04323g01009.1	sp|Q52QH4|NAC68_ORYSJ	***-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10260g00003.1	sp|P42552|S1FA_SPIOL	-***	DNA-binding protein S1FA	IPR006779 (DNA binding protein S1FA)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01208g01020.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01934g04001.1	sp|Q67YM6|DIR11_ARATH	***-	Dirigent protein 11	IPR004265 (Plant disease resistance response protein)	
Niben101Scf03208g07003.1	sp|O48844|PSD1A_ARATH	****	26S proteasome non-ATPase regulatory subunit 1 homolog A	IPR016024 (Armadillo-type fold), IPR016642 (26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit)	GO:0000502 (proteasome complex), GO:0005488 (binding), GO:0030234 (enzyme regulator activity), GO:0042176 (regulation of protein catabolic process)
Niben101Scf08586g05008.1	AT1G73650.3	*-*-	Protein of unknown function (DUF1295) LENGTH=302	IPR010721 (Protein of unknown function DUF1295)	
Niben101Scf02108g00002.1	sp|Q8LC03|ATB13_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-13	IPR002913 (START domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008289 (lipid binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01451g05015.1	sp|Q9ZVE0|ORN_ARATH	--*-	Oligoribonuclease		
Niben101Scf07096g01001.1	sp|Q9SSK5|MLP43_ARATH	***-	MLP-like protein 43	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf02015g07021.1	ref|XP_007014623.1|	*-*-	Evolutionarily conserved C-terminal region 2 isoform 2 [Theobroma cacao] gb|EOY32242.1| Evolutionarily conserved C-terminal region 2 isoform 2 [Theobroma cacao]		
Niben101Scf06280g01004.1			Unknown protein		
Niben101Scf01383g09019.1	gb|AES64334.2|	***-	F-box protein interaction domain protein [Medicago truncatula]		
Niben101Scf05279g03001.1	sp|A4VCH0|SAC1B_DANRE	*-*-	Phosphatidylinositide phosphatase SAC1-B	IPR002013 (SAC domain), IPR030213 (Phosphoinositide phosphatase SAC)	GO:0007033 (vacuole organization), GO:0036092 (phosphatidylinositol-3-phosphate biosynthetic process), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf09672g02009.1	AT5G12410.1	***-	THUMP domain-containing protein LENGTH=376	IPR004114 (THUMP)	GO:0003723 (RNA binding)
Niben101Scf18306g00009.1	ref|XP_002522765.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF39616.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf10067g02021.1			Unknown protein		
Niben101Scf12847g00018.1	sp|Q28C44|C19L2_XENTR	*-*-	CWF19-like protein 2	IPR006767 (Cwf19-like protein, C-terminal domain-2), IPR011146 (HIT-like domain)	GO:0003824 (catalytic activity)
Niben101Scf01687g12005.1	sp|A8SE78|RPOC2_CERDE	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf01521g15009.1	AT1G14360.1	***-	UDP-galactose transporter 3 LENGTH=331	IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf06819g02007.1	gb|KEH43864.1|	***-	heat shock 22 kDa protein [Medicago truncatula]		
Niben101Scf00543g02006.1	sp|Q8LFL4|CLE25_ARATH	--*-	CLAVATA3/ESR (CLE)-related protein 25		
Niben101Scf01144g02001.1	ref|XP_002533873.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF28504.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf10438g02002.1	sp|P46629|RAB25_RABIT	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf08050g00001.1	sp|Q9C9V6|Y1790_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf02408g03016.1	sp|Q94CL9|KRP7_ARATH	*-**	Cyclin-dependent kinase inhibitor 7	IPR003175 (Cyclin-dependent kinase inhibitor)	GO:0004861 (cyclin-dependent protein serine/threonine kinase inhibitor activity), GO:0005634 (nucleus), GO:0007050 (cell cycle arrest)
Niben101Scf02463g01009.1	sp|Q3E911|PP400_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00461g07003.1	emb|CDX78268.1|	***-	BnaA09g34630D [Brassica napus]	IPR008480 (Protein of unknown function DUF761, plant), IPR025520 (Domain of unknown function DUF4408)	
Niben101Scf01055g00004.1	sp|Q8H115|NA102_ARATH	***-	NAC domain-containing protein 102	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00454g00004.1	sp|Q91WD1|RPC4_MOUSE	*-**	DNA-directed RNA polymerase III subunit RPC4	IPR007811 (DNA-directed RNA polymerase III subunit RPC4)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005666 (DNA-directed RNA polymerase III complex), GO:0006383 (transcription from RNA polymerase III promoter)
Niben101Scf08723g02015.1	sp|P84981|FENR_POPEU	--**	Ferredoxin--NADP reductase, chloroplastic	IPR001433 (Oxidoreductase FAD/NAD(P)-binding), IPR015701 (Ferredoxin--NADP reductase), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03548g01011.1	sp|P56206|SYG_THET8	****	Glycine--tRNA ligase	IPR027031 (Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004820 (glycine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006426 (glycyl-tRNA aminoacylation)
Niben101Scf06775g00036.1	sp|Q8WV99|ZFN2B_HUMAN	*-**	AN1-type zinc finger protein 2B	IPR000058 (Zinc finger, AN1-type), IPR015880 (Zinc finger, C2H2-like)	GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf04779g01004.1	sp|P49042|VPE_RICCO	***-	Vacuolar-processing enzyme	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04103g09001.1	sp|P34103|PK4_DICDI	*-**	Protein kinase 4	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR002373 (cAMP/cGMP-dependent protein kinase), IPR011009 (Protein kinase-like domain)	GO:0001932 (regulation of protein phosphorylation), GO:0003824 (catalytic activity), GO:0004672 (protein kinase activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0005524 (ATP binding), GO:0005952 (cAMP-dependent protein kinase complex), GO:0006468 (protein phosphorylation), GO:0006470 (protein dephosphorylation), GO:0008603 (cAMP-dependent protein kinase regulator activity), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf22689g00002.1	sp|Q40778|C74A2_PARAR	*-*-	Allene oxide synthase	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf12159g09022.1	sp|Q8W104|FBL17_ARATH	***-	F-box/LRR-repeat protein 17	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf07790g01021.1	ref|XP_002304951.2|	--*-	glyc [Populus trichocarpa]		
Niben101Scf06103g02010.1	sp|F4ISY0|Y2837_ARATH	***-	WEB family protein	IPR008545 (WEB family)	
Niben101Scf00702g00012.1	emb|CDY45508.1|	--*-	BnaCnng12670D [Brassica napus]		
Niben101Scf03159g00001.1	AT4G00750.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=633	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf03778g01036.1	sp|Q9USR1|TXL1_SCHPO	*-*-	Thioredoxin-like protein 1	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03930g05034.1	sp|O49816|LEA1_CICAR	***-	Late embryogenesis abundant protein 1		
Niben101Scf03990g01004.1	gb|ABD32321.2|	****	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf04926g06008.1	sp|Q12834|CDC20_HUMAN	--*-	Cell division cycle protein 20 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05158g01064.1	gb|ADK71021.1|	*-*-	gibberellin 3-beta-hydroxylase [Trigonella sp. TU 33879]	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf00470g02006.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf02468g03006.1	sp|Q49SP5|TPGAS_POGCB	*-*-	Germacrene A synthase	IPR008949 (Isoprenoid synthase domain)	
Niben101Ctg07138g00001.1	gb|AES73151.2|	*-*-	myb-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf02275g02002.1	AT3G12600.1	****	nudix hydrolase homolog 16 LENGTH=180	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf10600g00005.1	emb|CDY33258.1|	*-*-	BnaC01g37310D [Brassica napus]		
Niben101Scf08060g00001.1	sp|Q9CAL3|CRK2_ARATH	--*-	Cysteine-rich receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03374g04010.1	AT4G16510.1	****	YbaK/aminoacyl-tRNA synthetase-associated domain LENGTH=232	IPR007214 (YbaK/aminoacyl-tRNA synthetase-associated domain)	GO:0002161 (aminoacyl-tRNA editing activity)
Niben101Scf02636g04005.1	sp|Q9SH14|MUB5_ARATH	*-*-	Membrane-anchored ubiquitin-fold protein 5	IPR029071 (Ubiquitin-related domain)	
Niben101Scf07278g02008.1	sp|Q9LT79|PUB25_ARATH	***-	U-box domain-containing protein 25	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf01374g11014.1	sp|Q9D071|MMS19_MOUSE	*-*-	MMS19 nucleotide excision repair protein homolog	IPR016024 (Armadillo-type fold), IPR024687 (MMS19, C-terminal)	GO:0005488 (binding)
Niben101Scf02610g00005.1	AT1G70750.1	*-*-	Protein of unknown function, DUF593 LENGTH=749	IPR007656 (Zein-binding domain)	
Niben101Scf02460g05007.1	AT3G17840.1	****	receptor-like kinase 902 LENGTH=647	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00551g01002.1	emb|CDY06823.1|	***-	BnaC01g09220D [Brassica napus]	IPR010410 (Protein of unknown function DUF1005)	
Niben101Scf12652g00014.1	sp|Q94AI4|METL1_ARATH	****	Methyltransferase-like protein 1	IPR002052 (DNA methylase, N-6 adenine-specific, conserved site), IPR007757 (MT-A70-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf00504g02001.1	AT5G60800.2	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=302	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf00570g05009.1	sp|P84551|SKOR1_RAT	--*-	SKI family transcriptional corepressor 1		
Niben101Scf02123g05003.1	sp|O64882|BGL17_ARATH	***-	Beta-glucosidase 17	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09052g03005.1	gb|EFA82253.1|	--*-	tetrahydrofolylpolyglutamate synthase [Polysphondylium pallidum PN500]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf01679g03020.1	ref|XP_002515707.1|	--*-	transcription regulator, putative [Ricinus communis] gb|EEF46654.1| transcription regulator, putative [Ricinus communis]	IPR007592 (Protein of unknown function DUF573)	
Niben101Scf08264g00007.1	gb|AES82098.2|	***-	spermatogenesis-associated-like protein [Medicago truncatula]	IPR008928 (Six-hairpin glycosidase-like), IPR012336 (Thioredoxin-like fold), IPR024705 (Spermatogenesis-associated protein 20)	GO:0003824 (catalytic activity)
Niben101Scf04011g11008.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf03196g00002.1	sp|Q9M2F1|RS272_ARATH	*-*-	40S ribosomal protein S27-2	IPR000592 (Ribosomal protein S27e), IPR023407 (Ribosomal protein S27e, zinc-binding domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05183g03003.1	sp|Q9HJX7|HELS_THEAC	*-**	ATP-dependent DNA helicase Hel308	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR016438 (RNA helicase, ATP-dependent, SK12/DOB1), IPR025696 (rRNA-processing arch domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf04406g01008.1	sp|Q66HG1|DMTF1_RAT	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00046g08005.1	emb|CDY36373.1|	***-	BnaC04g32810D [Brassica napus]		
Niben101Scf04283g02008.1	sp|Q733B9|MIAA_BACC1	*-**	tRNA dimethylallyltransferase	IPR002627 (tRNA isopentenyltransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf10855g06008.1	gb|ABY88526.1|	***-	NHL1, partial [Arabidopsis thaliana]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf11496g01007.1			Unknown protein		
Niben101Scf15903g00008.1	AT2G01220.2	***-	Nucleotidylyl transferase superfamily protein LENGTH=388	IPR008136 (CinA, C-terminal), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process)
Niben101Scf14634g01022.1	sp|Q9VAT2|DCA10_DROME	--*-	DDB1- and CUL4-associated factor 10 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05188g01002.1	AT5G23370.1	*-*-	GRAM domain-containing protein / ABA-responsive protein-related LENGTH=219		
Niben101Scf05837g03003.1	AT5G09620.1	*-*-	Octicosapeptide/Phox/Bem1p family protein LENGTH=531		
Niben101Scf04940g01004.1	sp|Q9ZPV5|NOC2L_ARATH	***-	Nucleolar complex protein 2 homolog	IPR005343 (Nucleolar complex protein 2)	
Niben101Scf07511g02004.1	AT3G47833.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=93		
Niben101Scf00858g03003.1	AT5G48150.1	***-	GRAS family transcription factor LENGTH=490	IPR005202 (Transcription factor GRAS)	
Niben101Scf00702g00011.1	sp|Q508M1|CYB_DIPSP	***-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal), IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf08991g02016.1	sp|A2YS06|ATG8C_ORYSI	***-	Autophagy-related protein 8C	IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain)	
Niben101Scf18030g00002.1	sp|Q9FZ95|PUP3_ARATH	***-	Purine permease 3	IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf01181g01012.1	sp|Q9C9U3|DOX2_ARATH	***-	Alpha-dioxygenase 2	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02842g00021.1	sp|Q9FJL8|RP5L1_ARATH	****	DNA-directed RNA polymerase subunit 5-like protein 1	IPR014381 (DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus), IPR020609 (Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Ctg16024g00004.1	sp|B8I363|PDXS_CLOCE	****	Pyridoxal biosynthesis lyase PdxS	IPR001852 (Pyridoxine biosynthesis protein), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0042823 (pyridoxal phosphate biosynthetic process)
Niben101Scf00378g02005.1	sp|Q9VQX4|PNCB_DROME	****	Nicotinate phosphoribosyltransferase	IPR002638 (Quinolinate phosphoribosyl transferase, C-terminal), IPR007229 (Nicotinate phosphoribosyltransferase family)	GO:0004514 (nicotinate-nucleotide diphosphorylase (carboxylating) activity), GO:0004516 (nicotinate phosphoribosyltransferase activity), GO:0009435 (NAD biosynthetic process), GO:0019358 (nicotinate nucleotide salvage)
Niben101Scf03414g03001.1			Unknown protein		
Niben101Scf28705g00003.1	sp|Q00557|CP1A1_MESAU	*-*-	Cytochrome P450 1A1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02836g01009.1	sp|Q9LN01|PPR21_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01055g00003.1	sp|Q9NZC3|GDE1_HUMAN	--*-	Glycerophosphodiester phosphodiesterase 1	IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain)	GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Scf14730g00011.1	gb|AES80779.2|	*-*-	transportin-like protein [Medicago truncatula]		
Niben101Scf03755g00001.1	sp|P55088|AQP4_MOUSE	***-	Aquaporin-4	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05216g09020.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf00087g04004.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf04331g06009.1			Unknown protein		
Niben101Scf00063g10020.1	sp|Q9C554|EXPA1_ARATH	*-*-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf07850g05012.1	sp|O74942|CYP9_SCHPO	*-**	Peptidyl-prolyl cis-trans isomerase 9	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf06410g01007.1	sp|Q43469|SLD1_HELAN	****	Delta(8)-fatty-acid desaturase	IPR012171 (Fatty acid/sphingolipid desaturase)	GO:0005506 (iron ion binding), GO:0006629 (lipid metabolic process), GO:0006633 (fatty acid biosynthetic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07196g01007.1	sp|Q5YGP7|PLET2_ARATH	*-**	AP2-like ethylene-responsive transcription factor PLT2	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01247g05006.1	AT5G05550.2	***-	sequence-specific DNA binding transcription factors LENGTH=249		
Niben101Scf00317g10011.1	emb|CDY10425.1|	***-	BnaCnng03260D [Brassica napus]		
Niben101Scf02875g00005.1	AT2G35230.1	*-*-	VQ motif-containing protein LENGTH=402	IPR008889 (VQ)	
Niben101Scf09343g01003.1	sp|A6MZM2|SUI1_ORYSI	****	Protein translation factor SUI1 homolog	IPR005874 (Eukaryotic translation initiation factor SUI1)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf06637g00012.1	sp|A1JSE7|PCKA_YERE8	*-**	Phosphoenolpyruvate carboxykinase [ATP]	IPR001272 (Phosphoenolpyruvate carboxykinase, ATP-utilising)	GO:0004611 (phosphoenolpyruvate carboxykinase activity), GO:0004612 (phosphoenolpyruvate carboxykinase (ATP) activity), GO:0005524 (ATP binding), GO:0006094 (gluconeogenesis), GO:0017076 (purine nucleotide binding)
Niben101Scf07515g03008.1	AT5G20740.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=205	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf07162g03026.1	sp|Q9C9V6|Y1790_ARATH	*-*-	BTB/POZ domain-containing protein	IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0009958 (positive gravitropism)
Niben101Scf05316g03005.1	sp|Q5B4C9|ATG26_EMENI	*-*-	Sterol 3-beta-glucosyltransferase	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase), IPR004276 (Glycosyltransferase family 28, N-terminal domain)	GO:0005975 (carbohydrate metabolic process), GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups), GO:0030259 (lipid glycosylation)
Niben101Scf02880g00009.1	emb|CDY47242.1|	*-*-	BnaA02g29280D [Brassica napus]	IPR025476 (Helitron helicase-like domain)	
Niben101Scf00315g03010.1	sp|Q9C512|MNS1_ARATH	*-*-	Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1		
Niben101Scf00087g03024.1	sp|O81127|RSZ21_ARATH	*-*-	Serine/arginine-rich splicing factor RSZ21	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf06885g00003.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06221g04035.1	ref|XP_002534597.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF27784.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03455g07004.1	sp|Q8W4J9|RPP8_ARATH	*-*-	Disease resistance protein RPP8	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf08757g00001.1	emb|CDX99098.1|	*-*-	BnaA06g17890D [Brassica napus]		
Niben101Scf00577g08003.1	sp|Q9SX20|PTR18_ARATH	*-*-	Protein NRT1/ PTR FAMILY 3.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03072g05002.1	sp|Q61116|ZN235_MOUSE	--*-	Zinc finger protein 235	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf10566g00006.1	AT1G27620.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf06829g03036.1			Unknown protein		
Niben101Scf00369g05009.1	AT5G27690.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=352	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf03693g06003.1	sp|Q9LK58|PP225_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf10675g00004.1	sp|Q9SPE5|SNAG_ARATH	***-	Gamma-soluble NSF attachment protein	IPR000744 (NSF attachment protein)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport)
Niben101Scf03810g06006.1	ref|XP_007048946.1|	***-	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative isoform 2, partial [Theobroma cacao] gb|EOX93103.1| Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative isoform 2, partial [Theobroma cacao]		
Niben101Scf12318g00007.1	sp|Q9SV43|PLP7_ARATH	***-	Patatin-like protein 7	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0008152 (metabolic process)
Niben101Scf09436g01003.1	AT2G31510.1	***-	IBR domain-containing protein LENGTH=562	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf06388g01027.1	emb|CDX86136.1|	*-*-	BnaA06g28530D [Brassica napus]	IPR018143 (Folate receptor-like)	
Niben101Scf00149g00007.1	sp|Q05A36|MEX3C_MOUSE	--**	RNA-binding E3 ubiquitin-protein ligase MEX3C	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01036g02004.1	ref|XP_003638621.1|	--*-	F-box/LRR-repeat protein [Medicago truncatula]		
Niben101Scf05449g01006.1			Unknown protein		
Niben101Scf01888g05008.1	emb|CDX74218.1|	*-*-	BnaA03g28290D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283), IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf01166g08006.1	AT1G21780.1	***-	BTB/POZ domain-containing protein LENGTH=326	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf20731g00001.1	sp|Q96WZ1|EF1A_COCIM	***-	Elongation factor 1-alpha	IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf01236g05008.1	gb|ACE79491.1|	*-*-	NBS-coding resistance gene analog [Nicotiana tabacum]	IPR002182 (NB-ARC)	GO:0043531 (ADP binding)
Niben101Scf02083g00003.1	ref|XP_002909729.1|	*-*-	crinkler (CRN) family protein [Phytophthora infestans T30-4] gb|EEY64563.1| crinkler (CRN) family protein [Phytophthora infestans T30-4]	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03340g05001.1	AT4G00340.1	*-**	receptor-like protein kinase 4 LENGTH=818	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf00919g02002.1	emb|CDX81152.1|	***-	BnaC03g04060D [Brassica napus]		
Niben101Scf10528g02003.1	AT1G44414.1	***-	unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=101		
Niben101Scf06565g00008.1	emb|CDX98822.1|	*-*-	BnaC09g50130D [Brassica napus]	IPR021480 (Protein of unknown function DUF3133)	
Niben101Scf01076g05001.1	AT4G01037.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=528	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf01758g02001.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02216g01018.1	sp|A0KAS4|TRML_BURCH	****	tRNA (cytidine(34)-2'-O)-methyltransferase	IPR016914 (tRNA (cytidine/uridine-2'-O-)-methyltransferase), IPR029028 (Alpha/beta knot methyltransferases)	GO:0001510 (RNA methylation), GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0008168 (methyltransferase activity), GO:0008173 (RNA methyltransferase activity)
Niben101Scf18677g00009.1	sp|O13671|CSE1_SCHPO	--*-	Importin-alpha re-exporter	IPR005043 (CAS/CSE, C-terminal)	GO:0005515 (protein binding)
Niben101Scf01623g09015.1	AT2G07768.1	*-**	Cytochrome C assembly protein LENGTH=154	IPR002541 (Cytochrome c assembly protein), IPR003567 (Cytochrome c-type biogenesis protein)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf00155g00010.1	AT2G03870.2	***-	Small nuclear ribonucleoprotein family protein LENGTH=99	IPR010920 (Like-Sm (LSM) domain), IPR017132 (U6 snRNA-associated Sm-like protein LSm7)	
Niben101Scf06564g00009.1	sp|O65555|Y4094_ARATH	*-*-	BTB/POZ domain-containing protein		
Niben101Scf00187g01013.1	sp|Q0H904|XYNC_ASPFU	*-*-	Endo-1,4-beta-xylanase C	IPR001000 (Glycoside hydrolase, family 10), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf12672g00005.1	AT2G15580.1	***-	RING/U-box superfamily protein LENGTH=196		
Niben101Scf16234g01018.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf03570g04001.1	sp|P34722|KPC1_CAEEL	*-**	Protein kinase C-like 1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12983g01028.1	sp|Q885J0|SYA_PSESM	*-**	Alanine--tRNA ligase	IPR003156 (DHHA1 domain), IPR018165 (Alanyl-tRNA synthetase, class IIc, core domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004813 (alanine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006419 (alanyl-tRNA aminoacylation), GO:0016876 (ligase activity, forming aminoacyl-tRNA and related compounds), GO:0043039 (tRNA aminoacylation)
Niben101Scf13842g01008.1	sp|Q9M041|BH140_ARATH	*-*-	Transcription factor bHLH140	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02359g00039.1	ref|NP_001041892.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf19315g00013.1	sp|P46302|RS28_MAIZE	***-	40S ribosomal protein S28	IPR000289 (Ribosomal protein S28e), IPR028626 (Ribosomal protein S28e conserved site)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00712g09029.1	sp|Q8CNY0|G3P2_STAES	*-*-	Glyceraldehyde-3-phosphate dehydrogenase 2	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf04040g09014.1	AT5G51160.1	***-	Ankyrin repeat family protein LENGTH=442	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	GO:0005515 (protein binding)
Niben101Scf01537g04013.1	gb|KEH19840.1|	***-	plant/MEB5-like protein [Medicago truncatula]		
Niben101Scf02626g02004.1	sp|O23429|VA724_ARATH	****	Vesicle-associated membrane protein 724	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf07935g00007.1	ref|XP_002511355.1|	*-*-	ubiquitin-protein ligase, putative [Ricinus communis] gb|EEF51957.1| ubiquitin-protein ligase, putative [Ricinus communis]		
Niben101Scf08015g07001.1	AT5G64360.3	*-*-	Chaperone DnaJ-domain superfamily protein LENGTH=464	IPR001623 (DnaJ domain)	
Niben101Scf11825g00004.1	sp|Q9FQ03|XRN3_ARATH	****	5'-3' exoribonuclease 3	IPR027073 (5'-3' exoribonuclease)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity), GO:0004534 (5'-3' exoribonuclease activity), GO:0005634 (nucleus), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008270 (zinc ion binding)
Niben101Scf02778g04003.1	AT1G11360.1	***-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=242	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf01436g03009.1	sp|P38011|GBLP_YEAST	*-**	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01433g08032.1	sp|Q9LVQ0|PME31_ARATH	****	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf00037g02012.1	sp|Q9JLH7|CK5P3_RAT	***-	CDK5 regulatory subunit-associated protein 3	IPR008491 (Protein of unknown function DUF773)	
Niben101Scf01750g07005.1	sp|Q9BTT6|LRRC1_HUMAN	*-*-	Leucine-rich repeat-containing protein 1	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	
Niben101Scf03548g02015.1	sp|Q8VYZ0|ORTH2_ARATH	***-	E3 ubiquitin-protein ligase ORTHRUS 2	IPR003105 (SRA-YDG), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015947 (PUA-like domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0042393 (histone binding)
Niben101Scf08430g00014.1	sp|Q9LYZ9|PP362_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01073g04021.1	sp|Q949M2|FABG4_BRANA	****	3-oxoacyl-[acyl-carrier-protein] reductase 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0004316 (3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09658g00016.1	gb|AES96430.2|	*-**	zinc ion-binding protein [Medicago truncatula]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf02353g06039.1	AT1G73260.1	****	kunitz trypsin inhibitor 1 LENGTH=215	IPR002160 (Proteinase inhibitor I3, Kunitz legume)	GO:0004866 (endopeptidase inhibitor activity)
Niben101Scf11874g00006.1			Unknown protein		
Niben101Scf02929g02029.1	gb|AHI43534.1|	--*-	RNA-dependent RNA polymerase [Fusarium circinatum mitovirus 2-1]	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf04404g01005.1	sp|P27154|CAPP_TOBAC	--*-	Phosphoenolpyruvate carboxylase		
Niben101Scf01495g00008.1	AT5G43170.1	***-	zinc-finger protein 3 LENGTH=193	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf06933g02001.1	AT2G24360.1	****	Protein kinase superfamily protein LENGTH=411	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf20953g00014.1	AT5G41460.1	***-	Protein of unknown function (DUF604) LENGTH=524	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf12159g00014.1	sp|P30064|ACCD_EPIVI	*-*-	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta		
Niben101Scf17127g00009.1	ref|XP_002521552.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF40823.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02243g07008.1	gb|ABN08700.1|	--*-	Endonuclease/exonuclease/phosphatase [Medicago truncatula]		
Niben101Scf03963g01001.1	ref|XP_007016014.1|	****	Mitochondria isoform 2 [Theobroma cacao] gb|EOY33633.1| Mitochondria isoform 2 [Theobroma cacao]	IPR007849 (ATPase assembly factor ATP10)	GO:0032592 (integral component of mitochondrial membrane)
Niben101Scf02425g04003.1	AT1G64290.1	***-	F-box protein-related LENGTH=364	IPR013187 (F-box associated domain, type 3)	
Niben101Scf13098g00014.1	sp|B7N5V2|FADJ_ECOLU	****	Fatty acid oxidation complex subunit alpha	IPR000048 (IQ motif, EF-hand binding site), IPR001753 (Crotonase superfamily), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain), IPR018376 (Enoyl-CoA hydratase/isomerase, conserved site), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0003857 (3-hydroxyacyl-CoA dehydrogenase activity), GO:0005515 (protein binding), GO:0006631 (fatty acid metabolic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02929g06092.1	AT2G07749.1	*-*-	Mitovirus RNA-dependent RNA polymerase LENGTH=246	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf03099g04007.1	AT1G70260.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=375	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf32020g00002.1	AT5G51220.1	*-*-	ubiquinol-cytochrome C chaperone family protein LENGTH=281		
Niben101Scf06000g01003.1			Unknown protein		
Niben101Scf20521g00001.1	AT4G39210.1	*-*-	Glucose-1-phosphate adenylyltransferase family protein LENGTH=521	IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf01086g00016.1	ref|XP_003623915.1|	*-*-	Ripening-related protein [Medicago truncatula]		
Niben101Scf08987g00012.1	sp|Q9CA54|PP122_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR000209 (Peptidase S8/S53 domain), IPR002885 (Pentatricopeptide repeat)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03872g02008.1	AT3G09870.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=113	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf04703g05004.1	sp|P83947|PME1_FICPW	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf06133g00016.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf05813g01010.1	AT1G45207.2	***-	Remorin family protein LENGTH=555	IPR005516 (Remorin, C-terminal)	
Niben101Scf11264g00002.1			Unknown protein		
Niben101Scf02639g03007.1	AT2G39380.1	****	exocyst subunit exo70 family protein H2 LENGTH=637	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf14591g01007.1	sp|Q6DAJ6|CAH_PECAS	***-	Carbonic anhydrase	IPR001148 (Alpha carbonic anhydrase), IPR023561 (Carbonic anhydrase, alpha-class)	GO:0004089 (carbonate dehydratase activity), GO:0006730 (one-carbon metabolic process), GO:0008270 (zinc ion binding)
Niben101Scf01716g00010.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06999g01001.1	sp|Q9CR16|PPID_MOUSE	*-**	Peptidyl-prolyl cis-trans isomerase D	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf24053g00003.1	sp|P52839|SOT12_ARATH	****	Cytosolic sulfotransferase 12	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf01328g01014.1	sp|P20791|RAB8B_DICDI	***-	Ras-related protein Rab-8B	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf07054g04016.1	AT5G61230.1	***-	Ankyrin repeat family protein LENGTH=174	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf07244g02003.1			Unknown protein		
Niben101Ctg14782g00004.1	sp|Q9LL84|DNLI4_ARATH	*-*-	DNA ligase 4		
Niben101Scf02114g01002.1	AT1G68040.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=363	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf01495g01004.1	AT4G20900.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=450	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04123g00002.1	sp|Q4WF61|NRPS3_ASPFU	--*-	Nonribosomal peptide synthetase 3		
Niben101Scf06050g01009.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf07797g01001.1	AT1G10720.1	*-*-	BSD domain-containing protein LENGTH=429	IPR005607 (BSD)	
Niben101Scf05584g01005.1	sp|P50939|NUOL_RHOCA	*-**	NADH-quinone oxidoreductase subunit L	IPR001516 (NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal), IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf01957g02003.1	sp|Q0WUQ1|BAG1_ARATH	****	BAG family molecular chaperone regulator 1	IPR003103 (BAG domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf01826g07010.1	sp|Q9SJM0|CALSA_ARATH	*-**	Callose synthase 10	IPR003440 (Glycosyl transferase, family 48), IPR026899 (1,3-beta-glucan synthase subunit FKS1-like, domain-1)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf06347g04036.1	sp|Q9FJB5|RP8L3_ARATH	*-*-	Disease resistance RPP8-like protein 3		
Niben101Scf08679g00004.1	dbj|BAD66744.1|	--*-	orf198 [Beta vulgaris subsp. vulgaris]		
Niben101Scf03671g00016.1	AT3G06035.1	***-	Glycoprotein membrane precursor GPI-anchored LENGTH=200		
Niben101Scf02929g00073.1	sp|Q8S8U7|NU4C_ATRBE	*-*-	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf05078g05001.1	sp|P0C1I2|PPIE_RHIO9	*-**	Peptidyl-prolyl cis-trans isomerase E	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf06084g00008.1	emb|CDX96168.1|	*-*-	BnaC02g14830D [Brassica napus]		
Niben101Scf00446g02002.1	ref|XP_007029709.1|	***-	Intracellular protein transport protein USO1 isoform 3 [Theobroma cacao] gb|EOY10211.1| Intracellular protein transport protein USO1 isoform 3 [Theobroma cacao]		
Niben101Scf28148g00002.1	sp|P42776|GBF3_ARATH	*-**	G-box-binding factor 3	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf11108g00009.1	sp|Q9LYG9|MSL10_ARATH	***-	Mechanosensitive ion channel protein 10	IPR006685 (Mechanosensitive ion channel MscS)	GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03850g02022.1	emb|CDY71177.1|	***-	BnaCnng71730D [Brassica napus]		
Niben101Scf00402g02004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03545g00016.1	sp|O48818|EXPA4_ARATH	***-	Expansin-A4	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Ctg08590g00001.1	AT2G45550.1	*-*-	cytochrome P450, family 76, subfamily C, polypeptide 4 LENGTH=511	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09209g03009.1	AT2G22120.2	***-	RING/FYVE/PHD zinc finger superfamily protein LENGTH=363	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf10431g00004.1	AT5G06970.1	***-	Protein of unknown function (DUF810) LENGTH=1101	IPR008528 (Protein of unknown function DUF810)	
Niben101Scf05053g00008.1	gb|AAM63106.1|	*-*-	topoisomerase-like protein [Arabidopsis thaliana]		
Niben101Scf08230g00002.1	ref|WP_019421422.1|	****	glycosyl transferase family 2 [Paenibacillus sp. OSY-SE]	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf02235g04027.1	ref|WP_029082971.1|	***-	pyridoxamine 5'-phosphate oxidase [Bradyrhizobium sp. th.b2]	IPR012349 (FMN-binding split barrel), IPR019595 (Domain of unknown function DUF2470)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01991g05013.1	sp|Q9M886|LBD41_ARATH	***-	LOB domain-containing protein 41	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf00484g03008.1	ATMG00090.1	*-**	structural constituent of ribosome;protein binding chrM:25482-28733 REVERSE LENGTH=556	IPR001351 (Ribosomal protein S3, C-terminal)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04028g01008.1			Unknown protein		
Niben101Scf02569g04005.1	ref|XP_007039994.1|	***-	F5O11.10 isoform 3 [Theobroma cacao] gb|EOY24495.1| F5O11.10 isoform 3 [Theobroma cacao]	IPR007021 (Domain of unknown function DUF659), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf05025g11024.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04436g07003.1	sp|Q2TA10|UB2D1_BOVIN	***-	Ubiquitin-conjugating enzyme E2 D1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf03595g19030.1	sp|A1URA3|FTSH_BARBK	*-**	ATP-dependent zinc metalloprotease FtsH	IPR000642 (Peptidase M41), IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis)
Niben101Scf20270g00002.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf03949g00023.1	sp|P25765|CHI12_ORYSJ	****	Chitinase 12	IPR000726 (Glycoside hydrolase, family 19, catalytic), IPR001002 (Chitin-binding, type 1), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0006032 (chitin catabolic process), GO:0008061 (chitin binding), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf03549g01008.1	AT2G23080.1	*-**	Protein kinase superfamily protein LENGTH=333	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06133g00004.1	sp|Q402F3|TOM3_TOBAC	*-*-	Tobamovirus multiplication protein 3	IPR009457 (Domain of unknown function DUF1084)	
Niben101Scf00478g06015.1	sp|Q5IGR6|EXT1C_DANRE	*-*-	Exostosin-1c	IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0006024 (glycosaminoglycan biosynthetic process), GO:0015012 (heparan sulfate proteoglycan biosynthetic process), GO:0016021 (integral component of membrane)
Niben101Scf13522g01013.1	AT5G02460.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=399	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01428g01005.1	gb|KEH35837.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf02854g00009.1			Unknown protein		
Niben101Scf00135g02004.1	AT5G18050.1	***-	SAUR-like auxin-responsive protein family LENGTH=90	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01922g06017.1	AT4G12570.1	*-**	ubiquitin protein ligase 5 LENGTH=873	IPR000569 (HECT)	GO:0004842 (ubiquitin-protein transferase activity)
Niben101Scf03224g13002.1	sp|Q9SH27|LOR4_ARATH	***-	Protein LURP-one-related 4	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf00853g08016.1	gb|AFI47460.1|	****	invertase inhibitor [Solanum tuberosum]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf29015g00004.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06089g00009.1	gb|KEH42602.1|	-***	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf03128g01007.1	gb|ABA97040.1|	*-*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf04407g02022.1	ref|NP_001043425.1|	*-*-	product [Oryza sativa Japonica Group]	IPR009500 (Protein of unknown function DUF1118)	
Niben101Scf05767g03004.1	sp|Q8L868|E1311_ARATH	***-	Glucan endo-1,3-beta-glucosidase 11	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00218g01009.1	sp|Q9S7L9|CX6B1_ARATH	*-**	Cytochrome c oxidase subunit 6b-1	IPR003213 (Cytochrome c oxidase, subunit VIb)	GO:0004129 (cytochrome-c oxidase activity), GO:0005739 (mitochondrion)
Niben101Scf01974g00018.1	AT2G22260.1	****	oxidoreductase, 2OG-Fe(II) oxygenase family protein LENGTH=314	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf14883g03020.1	AT4G10300.1	*-*-	RmlC-like cupins superfamily protein LENGTH=134	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf08982g00005.1	gb|KEH18842.1|	*-*-	ARID/bright DNA-binding domain protein [Medicago truncatula]		
Niben101Scf02974g00016.1	emb|CDY43227.1|	***-	BnaC05g48200D [Brassica napus]		
Niben101Scf23305g01003.1	sp|Q9FHA6|RLF34_ARATH	***-	Protein RALF-like 34	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf04220g07005.1	sp|Q9S9N9|CCR1_ARATH	***-	Cinnamoyl-CoA reductase 1	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf02942g00008.1	sp|Q42510|GNOM_ARATH	****	ARF guanine-nucleotide exchange factor GNOM	IPR000904 (Sec7 domain), IPR016024 (Armadillo-type fold), IPR023394 (Sec7 domain, alpha orthogonal bundle)	GO:0005086 (ARF guanyl-nucleotide exchange factor activity), GO:0005488 (binding), GO:0032012 (regulation of ARF protein signal transduction)
Niben101Scf02929g06014.1	ref|XP_002535856.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02597g01007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07839g00005.1	AT1G68110.1	***-	ENTH/ANTH/VHS superfamily protein LENGTH=379	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf15244g00002.1	AT1G67660.1	***-	Restriction endonuclease, type II-like superfamily protein LENGTH=355	IPR011335 (Restriction endonuclease  type II-like)	GO:0003677 (DNA binding), GO:0004518 (nuclease activity)
Niben101Scf01017g05008.1	AT5G16250.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=183		
Niben101Scf01172g09006.1	sp|Q9LQU4|PCR2_ARATH	***-	Protein PLANT CADMIUM RESISTANCE 2	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf03006g06010.1	AT3G57040.1	***-	response regulator 9 LENGTH=234	IPR011006 (CheY-like superfamily)	
Niben101Scf02006g04006.1	sp|P36049|EBP2_YEAST	*-*-	rRNA-processing protein EBP2	IPR008610 (Eukaryotic rRNA processing)	
Niben101Scf01702g02007.1	AT2G20990.3	***-	synaptotagmin A LENGTH=579	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00914g04011.1	sp|Q9ZPX1|ARF5_ARATH	*-*-	ADP-ribosylation factor-like protein 2	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf06358g00010.1	AT1G48880.1	***-	TRICHOME BIREFRINGENCE-LIKE 7 LENGTH=445	IPR026057 (PC-Esterase)	
Niben101Scf06200g03028.1	emb|CDY67453.1|	--*-	BnaCnng55030D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf03224g07010.1	AT1G80450.1	***-	VQ motif-containing protein LENGTH=177	IPR008889 (VQ)	
Niben101Scf01042g01001.1			Unknown protein		
Niben101Scf11676g00002.1	sp|Q8RWV3|CCL11_ARATH	****	Cyclin-L1-1	IPR015429 (Cyclin C/H/T/L)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0006396 (RNA processing), GO:0019901 (protein kinase binding)
Niben101Scf15286g00032.1	sp|Q3E8X3|PTR52_ARATH	***-	Protein NRT1/ PTR FAMILY 2.8	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03574g00028.1	sp|Q7N3Y5|ZNTB_PHOLL	*-**	Zinc transport protein ZntB	IPR002523 (Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Ctg05239g00001.1	sp|O22131|LBD18_ARATH	*-*-	LOB domain-containing protein 18	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf00508g01011.1	sp|Q9SYM1|MSL6_ARATH	*-*-	Mechanosensitive ion channel protein 6	IPR006685 (Mechanosensitive ion channel MscS), IPR010920 (Like-Sm (LSM) domain)	GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03930g01016.1	sp|Q943Q3|HS166_ORYSJ	-**-	16.6 kDa heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf30335g00004.1			Unknown protein		
Niben101Scf08374g04001.1	sp|Q9S7R3|LSH10_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	IPR006936 (ALOG domain)	
Niben101Scf06444g02003.1	sp|B1WQZ8|RS2_CYAA5	*-**	30S ribosomal protein S2	IPR001865 (Ribosomal protein S2), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf00389g00004.1	sp|Q9C7B1|TRP3_ARATH	****	Telomere repeat-binding protein 3	IPR009057 (Homeodomain-like), IPR029071 (Ubiquitin-related domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf10157g02007.1	sp|Q94HF1|EIF3K_ORYSJ	****	Eukaryotic translation initiation factor 3 subunit K	IPR005062 (SAC3/GANP/Nin1/mts3/eIF-3 p25), IPR009374 (Eukaryotic translation initiation factor 3 subunit K), IPR016024 (Armadillo-type fold)	GO:0003743 (translation initiation factor activity), GO:0005488 (binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex), GO:0006446 (regulation of translational initiation), GO:0043022 (ribosome binding)
Niben101Scf04084g03001.1	sp|Q9M9L0|APC11_ARATH	*-**	Anaphase-promoting complex subunit 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR024991 (Anaphase-promoting complex subunit 11)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005680 (anaphase-promoting complex)
Niben101Scf01752g08011.1	sp|Q7F9K4|BGL10_ORYSJ	*-*-	Beta-glucosidase 10	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03156g00002.1	sp|Q92804|RBP56_HUMAN	*-**	TATA-binding protein-associated factor 2N	IPR001876 (Zinc finger, RanBP2-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf11052g00008.1	sp|Q11002|CANA_DROME	***-	Calpain-A	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR022684 (Peptidase C2, calpain family)	GO:0004198 (calcium-dependent cysteine-type endopeptidase activity), GO:0005622 (intracellular), GO:0006508 (proteolysis)
Niben101Scf11366g02017.1	emb|CDY62460.1|	***-	BnaA04g28410D [Brassica napus]		
Niben101Scf06826g08002.1	sp|Q6P5M2|WDR61_DANRE	***-	WD repeat-containing protein 61	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05438g01001.1	sp|Q9FFR9|CHX18_ARATH	****	Cation/H(+) antiporter 18	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf04234g01014.1	sp|Q8LGU6|CD27B_ARATH	*-*-	Cell division cycle protein 27 homolog B	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02494g10013.1	emb|CDY69766.1|	***-	BnaCnng65240D [Brassica napus]	IPR009902 (Protein of unknown function DUF1442), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf03321g04016.1	sp|O80560|IP5PC_ARATH	****	Type I inositol 1,4,5-trisphosphate 5-phosphatase 12	IPR005135 (Endonuclease/exonuclease/phosphatase), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf04783g03003.1	sp|Q67XQ0|Y4424_ARATH	***-	DUF21 domain-containing protein	IPR000644 (CBS domain), IPR002550 (Domain of unknown function DUF21)	
Niben101Scf00820g08002.1	sp|Q11180|WHT1_CAEEL	*-**	ABC transporter ATP-binding protein/permease wht-1	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00248g01002.1	ref|XP_007045700.1|	-**-	Defensin-like family protein, putative [Theobroma cacao] gb|EOY01532.1| Defensin-like family protein, putative [Theobroma cacao]		
Niben101Scf02730g00016.1	sp|Q9UDV7|ZN282_HUMAN	--*-	Zinc finger protein 282	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf11122g00008.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01267g04004.1	AT4G24580.1	*-*-	Rho GTPase activation protein (RhoGAP) with PH domain LENGTH=933		
Niben101Scf03817g12027.1	AT3G44160.1	****	Outer membrane OMP85 family protein LENGTH=362	IPR000184 (Bacterial surface antigen (D15))	GO:0019867 (outer membrane)
Niben101Scf10767g03012.1	sp|Q9T048|DRL27_ARATH	***-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf08683g00001.1	sp|O81822|HS177_ARATH	***-	17.7 kDa class II heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf09792g02018.1	sp|Q6NVL7|CHM2B_XENTR	***-	Charged multivesicular body protein 2b	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf03584g03004.1	sp|Q9CAJ0|P2C16_ARATH	****	Protein phosphatase 2C 16	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf00978g02010.1	sp|B2UMY1|FTSH_AKKM8	*-**	ATP-dependent zinc metalloprotease FtsH	IPR000642 (Peptidase M41), IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis)
Niben101Scf02864g04011.1	AT5G07900.1	*-**	Mitochondrial transcription termination factor family protein LENGTH=405	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09577g00005.1	sp|Q9LFQ3|SNL2_ARATH	***-	Paired amphipathic helix protein Sin3-like 2	IPR003822 (Paired amphipathic helix), IPR013194 (Histone deacetylase interacting)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05304g01010.1	AT1G44414.1	***-	unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=101		
Niben101Scf05717g02005.1	sp|O48724|WEB1_ARATH	*-*-	Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1	IPR008545 (WEB family), IPR019007 (WW domain binding protein 11)	GO:0006396 (RNA processing)
Niben101Scf02513g03012.1	gb|ABA98637.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf04979g02013.1	AT4G24970.1	*-*-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=707	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf05135g03011.1	ref|XP_002524436.1|	-***	nucleic acid binding protein, putative [Ricinus communis] gb|EEF37876.1| nucleic acid binding protein, putative [Ricinus communis]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf08566g03003.1	sp|Q9FEG2|TOM1_ARATH	***-	Tobamovirus multiplication protein 1	IPR009457 (Domain of unknown function DUF1084)	
Niben101Scf02232g00014.1	sp|Q8TRR0|RS11_METAC	***-	30S ribosomal protein S11	IPR001971 (Ribosomal protein S11)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07729g03014.1	sp|Q8LPL6|AP2A1_ARATH	****	AP-2 complex subunit alpha-1	IPR009028 (Coatomer/calthrin adaptor appendage, C-terminal subdomain), IPR013041 (Coatomer/clathrin adaptor appendage, Ig-like subdomain), IPR016024 (Armadillo-type fold), IPR017104 (Adaptor protein complex AP-2, alpha subunit)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030131 (clathrin adaptor complex)
Niben101Scf04953g12009.1	sp|Q9SF32|IQD1_ARATH	***-	Protein IQ-DOMAIN 1	IPR025064 (Domain of unknown function DUF4005)	
Niben101Scf03766g10008.1	sp|Q9CAG5|PUB7_ARATH	*-*-	U-box domain-containing protein 7	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02074g00064.1	gb|AIE42546.1|	***-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf06084g00009.1	AT1G61870.1	***-	pentatricopeptide repeat 336 LENGTH=408	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf15342g00002.1	sp|Q9M5X8|NLTP_PRUAV	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf00508g08002.1	AT1G75590.1	***-	SAUR-like auxin-responsive protein family LENGTH=154	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf07640g01001.1	AT3G02700.1	*-*-	NC domain-containing protein-related LENGTH=252	IPR007053 (LRAT-like domain)	
Niben101Scf13186g01004.1	sp|Q55G88|PSMG3_DICDI	***-	Proteasome assembly chaperone 3	IPR018788 (Proteasome assembly chaperone 3)	
Niben101Scf04180g01009.1	sp|D9UBG0|RTM1B_ARATH	--*-	Inactive protein RESTRICTED TEV MOVEMENT 1	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf04283g07027.1	tpg|DAA54611.1|	***-	TPA: hypothetical protein ZEAMMB73_096616 [Zea mays]		
Niben101Scf02249g03015.1	sp|P84085|ARF5_HUMAN	***-	ADP-ribosylation factor 5	IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf04943g00005.1	gb|ACF19789.1|	--*-	NAC transcription factor [Nicotiana tabacum]		
Niben101Scf04220g07001.1	AT5G25110.1	****	CBL-interacting protein kinase 25 LENGTH=488	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06653g01003.1	sp|O80856|ARC1A_ARATH	****	Actin-related protein 2/3 complex subunit 1A	IPR017383 (Actin-related protein 2/3 complex subunit 1)	GO:0005515 (protein binding), GO:0005885 (Arp2/3 protein complex), GO:0015629 (actin cytoskeleton), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf08482g00016.1	AT5G43100.1	***-	Eukaryotic aspartyl protease family protein LENGTH=631	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01859g02003.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf07089g02011.1	AT5G12890.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=488	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04339g02021.1	sp|Q9LJU0|CBL10_ARATH	***-	COBRA-like protein 10	IPR006918 (COBRA, plant), IPR012291 (Cellulose-binding family II/chitobiase, carbohydrate-binding domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0010215 (cellulose microfibril organization), GO:0016049 (cell growth), GO:0030247 (polysaccharide binding), GO:0031225 (anchored component of membrane)
Niben101Scf00854g11110.1			Unknown protein		
Niben101Scf05761g01040.1	AT5G08060.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=131		
Niben101Scf00479g03014.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg14476g00001.1	ref|XP_007046338.1|	--*-	Decapping 5 [Theobroma cacao] gb|EOY02170.1| Decapping 5 [Theobroma cacao]	IPR025768 (TFG box)	
Niben101Scf00795g00009.1	sp|B7LU53|HEM3_ESCF3	***-	Porphobilinogen deaminase	IPR000860 (Tetrapyrrole biosynthesis, hydroxymethylbilane synthase)	GO:0004418 (hydroxymethylbilane synthase activity), GO:0018160 (peptidyl-pyrromethane cofactor linkage), GO:0033014 (tetrapyrrole biosynthetic process)
Niben101Scf08535g01003.1	sp|Q6NXD8|DEN5B_DANRE	*-*-	DENN domain-containing protein 5B	IPR001194 (DENN domain), IPR005112 (dDENN domain), IPR005113 (uDENN domain)	
Niben101Scf01269g04010.1	AT5G54890.1	****	RNA-binding CRS1 / YhbY (CRM) domain-containing protein LENGTH=358	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf00558g00003.1	sp|Q3C1J0|YCF4_NICSY	****	Photosystem I assembly protein Ycf4	IPR003359 (Photosystem I Ycf4, assembly)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00332g09010.1	AT5G17900.1	***-	microfibrillar-associated protein-related LENGTH=435	IPR009730 (Micro-fibrillar-associated protein 1, C-terminal)	
Niben101Scf01082g03014.1	sp|P10973|NLTPA_RICCO	****	Non-specific lipid-transfer protein A	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf05554g00014.1	sp|P93045|BSH_ARATH	****	Chromatin structure-remodeling complex protein BSH	IPR006939 (SNF5/SMARCB1/INI1)	GO:0000228 (nuclear chromosome), GO:0006338 (chromatin remodeling)
Niben101Scf01909g01002.1	sp|P45432|CSN1_ARATH	***-	COP9 signalosome complex subunit 1	IPR000717 (Proteasome component (PCI) domain), IPR019585 (26S proteasome, regulatory subunit Rpn7)	GO:0005515 (protein binding)
Niben101Scf00217g02016.1	AT1G50720.1	***-	Stigma-specific Stig1 family protein LENGTH=154	IPR006969 (Stigma-specific protein Stig1)	
Niben101Scf01119g03001.1	sp|Q9GZR2|REXO4_HUMAN	*-**	RNA exonuclease 4	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf00083g04009.1	sp|P31562|ACCD_CUSRE	*-*-	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	IPR029045 (ClpP/crotonase-like domain)	
Niben101Scf04650g06004.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf02982g00011.1	sp|Q5ZIN1|NUDC_CHICK	*-*-	Nuclear migration protein nudC	IPR008978 (HSP20-like chaperone)	
Niben101Scf00839g00006.1	sp|Q9C5I3|ERF76_ARATH	*-**	Ethylene-responsive transcription factor 11	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf20553g00004.1	sp|Q9ZU90|SKI28_ARATH	*-*-	F-box protein SKIP28	IPR017900 (4Fe-4S ferredoxin, iron-sulphur binding, conserved site)	
Niben101Scf02583g02006.1	ref|XP_002518181.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF44314.1| conserved hypothetical protein [Ricinus communis]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf08843g00001.1	ref|XP_002509463.1|	*-**	structural constituent of cell wall, putative [Ricinus communis] gb|EEF50850.1| structural constituent of cell wall, putative [Ricinus communis]	IPR003882 (Pistil-specific extensin-like protein), IPR006041 (Pollen Ole e 1 allergen/extensin)	GO:0005199 (structural constituent of cell wall)
Niben101Scf02059g02001.1	sp|Q7X7A9|FB4_ARATH	*-*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf09456g00016.1	sp|P20337|RAB3B_HUMAN	*-*-	Ras-related protein Rab-3B	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf06738g00002.1	sp|P80880|TRXB_BACSU	****	Thioredoxin reductase	IPR012336 (Thioredoxin-like fold), IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0004791 (thioredoxin-disulfide reductase activity), GO:0005737 (cytoplasm), GO:0016491 (oxidoreductase activity), GO:0019430 (removal of superoxide radicals), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06275g04004.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf15657g02027.1	sp|Q9KTV1|DADA_VIBCH	***-	D-amino acid dehydrogenase	IPR006076 (FAD dependent oxidoreductase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05830g04016.1	ref|XP_002528677.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF33716.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07790g01020.1	sp|Q9SVS1|BGL47_ARATH	*-*-	Beta-glucosidase 47	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00369g20002.1	AT4G34860.1	*-*-	Plant neutral invertase family protein LENGTH=571	IPR024746 (Glycosyl hydrolase family 100)	GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf06094g07014.1	sp|Q7XJN6|PP197_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf12517g00006.1	sp|Q9SX48|STP9_ARATH	*-**	Sugar transport protein 9	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01274g05007.1	AT1G29020.1	*-**	Calcium-binding EF-hand family protein LENGTH=564	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Ctg14033g00003.1	AT5G50150.1	***-	Protein of Unknown Function (DUF239) LENGTH=420	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf04841g00007.1	sp|Q08305|PPOC_SOLLC	*-*-	Polyphenol oxidase C, chloroplastic	IPR008922 (Uncharacterised domain, di-copper centre)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf09492g00008.1	AT3G46460.1	***-	ubiquitin-conjugating enzyme 13 LENGTH=166	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf02291g06004.1	sp|Q84WQ5|CBSX5_ARATH	*-*-	CBS domain-containing protein CBSX5		
Niben101Scf04118g01006.1	sp|Q9XZE5|PP2AA_DICDI	***-	Serine/threonine-protein phosphatase 2A catalytic subunit A	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf09595g04001.1	AT3G14270.1	*-**	phosphatidylinositol-4-phosphate 5-kinase family protein LENGTH=1791	IPR002423 (Chaperonin Cpn60/TCP-1), IPR002498 (Phosphatidylinositol-4-phosphate 5-kinase, core), IPR027409 (GroEL-like apical domain), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0044267 (cellular protein metabolic process), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf11356g00006.1	AT3G07400.1	*-*-	lipase class 3 family protein LENGTH=1003	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01035g04005.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00522g01007.1	sp|P42696|RBM34_HUMAN	*-**	RNA-binding protein 34	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07693g00009.1			Unknown protein		
Niben101Scf00135g02006.1	AT4G38840.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03284g06008.1	ref|NP_001289833.1|	****	sodium transporter HKT1 [Solanum lycopersicum] emb|CDI45387.1| membrane Na+ transporter [Solanum lycopersicum]	IPR003445 (Cation transporter)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01463g00018.1	sp|Q9LJX4|PUM5_ARATH	***-	Pumilio homolog 5	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf03407g00004.1	sp|Q5JNJ5|ENL1_ORYSJ	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf04444g06005.1	sp|Q9W4D2|RNP4F_DROME	--**	RNA-binding protein 4F	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05766g00007.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf03362g01007.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]		
Niben101Scf04209g02001.1			Unknown protein		
Niben101Scf03676g03010.1	sp|Q54UK0|PLDA_DICDI	*-*-	Phospholipase D A	IPR015679 (Phospholipase D family)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03877g00011.1	AT1G71860.1	*-*-	protein tyrosine phosphatase 1 LENGTH=340	IPR029021 (Protein-tyrosine phosphatase-like)	
Niben101Scf00314g01007.1	sp|Q9SFC6|GDIR_ARATH	****	Rho GDP-dissociation inhibitor 1	IPR000406 (RHO protein GDP dissociation inhibitor), IPR014756 (Immunoglobulin E-set)	GO:0005094 (Rho GDP-dissociation inhibitor activity), GO:0005737 (cytoplasm)
Niben101Scf08430g00010.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05712g02007.1			Unknown protein		
Niben101Scf08194g01022.1	dbj|BAM65810.1|	***-	Tm-1 protein [Solanum habrochaites]	IPR008322 (Uncharacterised protein family UPF0261), IPR013785 (Aldolase-type TIM barrel), IPR015813 (Pyruvate/Phosphoenolpyruvate kinase-like domain)	GO:0003824 (catalytic activity)
Niben101Scf01498g06001.1	sp|A0SPJ3|NAMA1_TRITD	--**	NAC transcription factor NAM-A1	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf20973g00001.1	ref|XP_002535856.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04069g00008.1	sp|Q8ZMM8|PIPB2_SALTY	*-*-	Secreted effector protein pipB2	IPR001646 (Pentapeptide repeat)	
Niben101Scf00862g02051.1	sp|Q6ZSG1|RN165_HUMAN	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03840g00007.1	AT3G06520.1	*-*-	agenet domain-containing protein LENGTH=466	IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf04700g00003.1	sp|Q9LPM9|BCAT6_ARATH	****	Branched-chain-amino-acid aminotransferase 6	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0004084 (branched-chain-amino-acid transaminase activity), GO:0008152 (metabolic process), GO:0009081 (branched-chain amino acid metabolic process)
Niben101Scf06388g00004.1	sp|O81775|GDU1_ARATH	***-	Protein GLUTAMINE DUMPER 1		
Niben101Scf03779g05017.1	emb|CDY20509.1|	*-*-	BnaC04g05350D [Brassica napus]		
Niben101Scf01775g01002.1	AT1G10390.1	*-*-	Nucleoporin autopeptidase LENGTH=1041		
Niben101Scf03810g07006.1	AT2G43000.1	***-	NAC domain containing protein 42 LENGTH=275	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf16663g00001.1	AT4G24400.1	****	CBL-interacting protein kinase 8 LENGTH=445	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07545g00004.1	sp|Q9FMR3|NAC90_ARATH	--*-	NAC domain-containing protein 90	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08202g00003.1	AT5G17610.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=121		
Niben101Scf08819g00015.1	sp|Q9ZUA9|Y2181_ARATH	*-*-	PHD finger protein	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00991g04002.1	sp|Q9M2W8|Y3990_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf02688g06013.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01749g01004.1	sp|B2SA93|CCME_BRUA1	****	Cytochrome c-type biogenesis protein CcmE	IPR004329 (CcmE/CycJ protein)	GO:0005886 (plasma membrane), GO:0017003 (protein-heme linkage), GO:0017004 (cytochrome complex assembly)
Niben101Scf03710g07001.1	AT1G21640.2	****	NAD kinase 2 LENGTH=999	IPR002504 (Inorganic polyphosphate/ATP-NAD kinase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0003951 (NAD+ kinase activity), GO:0006741 (NADP biosynthetic process), GO:0008152 (metabolic process), GO:0019674 (NAD metabolic process)
Niben101Scf35993g00003.1	sp|Q8VYW6|GAGT1_ARATH	--*-	Gamma-glutamyltranspeptidase 1		
Niben101Scf24954g00002.1			Unknown protein		
Niben101Scf03930g05035.1	sp|Q9FJJ5|EB1B_ARATH	****	Microtubule-associated protein RP/EB family member 1B	IPR001715 (Calponin homology domain), IPR004953 (EB1, C-terminal), IPR027328 (Microtubule-associated protein RP/EB)	GO:0005515 (protein binding), GO:0008017 (microtubule binding)
Niben101Scf03455g07003.1	sp|Q9FRG8|GRF9_ORYSJ	--*-	Growth-regulating factor 9	IPR014977 (WRC)	
Niben101Scf00949g01010.1	sp|Q9FMY5|U2AFB_ARATH	***-	Splicing factor U2af small subunit B	IPR009145 (U2 auxiliary factor small subunit), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0046872 (metal ion binding)
Niben101Scf01773g03023.1	sp|P62980|RS27A_SOLLC	*-*-	Ubiquitin-40S ribosomal protein S27a	IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00797g19015.1			Unknown protein		
Niben101Scf05154g01005.1	sp|Q2RH55|GLGA_MOOTA	****	Glycogen synthase	IPR011835 (Glycogen/starch synthase, ADP-glucose type)	GO:0009011 (starch synthase activity), GO:0009058 (biosynthetic process), GO:0009250 (glucan biosynthetic process)
Niben101Ctg14866g00003.1	emb|CDX95033.1|	***-	BnaC05g06380D [Brassica napus]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf02564g14006.1	sp|Q40832|TBA2_PELFA	***-	Tubulin alpha-2 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf03052g00016.1	AT3G26560.1	*-**	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004386 (helicase activity)
Niben101Scf07294g00013.1	gb|AES78631.2|	*-*-	acting on ester bonds hydrolase [Medicago truncatula]		
Niben101Scf01262g00008.1	AT2G26150.1	*-**	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf10342g01026.1	AT1G09910.1	***-	Rhamnogalacturonate lyase family protein LENGTH=675	IPR008979 (Galactose-binding domain-like), IPR010325 (Rhamnogalacturonate lyase), IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0030246 (carbohydrate binding)
Niben101Scf00607g01002.1	sp|Q9Y257|KCNK6_HUMAN	--*-	Potassium channel subfamily K member 6	IPR013099 (Two pore domain potassium channel domain)	
Niben101Scf00551g01003.1	sp|Q9ZR37|DUS1_ARATH	*-**	Dual specificity protein phosphatase 1	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf01374g11013.1	sp|Q2KJ14|PAF1_BOVIN	*-*-	RNA polymerase II-associated factor 1 homolog	IPR007133 (RNA polymerase II-associated, Paf1)	
Niben101Scf04300g02009.1	AT3G04970.1	*-*-	DHHC-type zinc finger family protein LENGTH=397		
Niben101Scf03570g01006.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00712g09026.1	sp|Q9C8E7|GLR33_ARATH	****	Glutamate receptor 3.3	IPR001320 (Ionotropic glutamate receptor), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf07103g01018.1	sp|P31562|ACCD_CUSRE	*-*-	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	IPR029045 (ClpP/crotonase-like domain)	GO:0016874 (ligase activity)
Niben101Scf03817g00001.1	sp|A2RVP7|TI221_ARATH	***-	Mitochondrial import inner membrane translocase subunit TIM22-1	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Ctg12586g00003.1	AT5G09890.2	*-**	Protein kinase family protein LENGTH=516	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05483g00008.1	AT1G64850.1	****	Calcium-binding EF hand family protein LENGTH=162	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01526g06006.1	AT3G54380.1	***-	SAC3/GANP/Nin1/mts3/eIF-3 p25 family LENGTH=406	IPR005062 (SAC3/GANP/Nin1/mts3/eIF-3 p25)	
Niben101Scf01322g04003.1	sp|Q91YK0|LRC49_MOUSE	*-*-	Leucine-rich repeat-containing protein 49	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf01841g03020.1	AT2G37530.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=122		
Niben101Scf04371g01006.1	sp|O22582|H2B_GOSHI	*-*-	Histone H2B	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf10375g01002.1	AT1G67080.1	***-	abscisic acid (aba)-deficient 4 LENGTH=220	IPR025461 (Protein of unknown function DUF4281)	
Niben101Scf00150g03002.1	sp|Q84MB3|ACCH1_ARATH	*-*-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf08586g05009.1	sp|Q68FF9|S5A1_MOUSE	--*-	3-oxo-5-alpha-steroid 4-dehydrogenase 1	IPR010721 (Protein of unknown function DUF1295)	GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
Niben101Scf07034g08030.1	sp|Q9LVQ0|PME31_ARATH	****	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf03278g02002.1	sp|Q4FS42|MSBA_PSYA2	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf02133g00003.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf05830g06012.1	AT2G21970.1	***-	stress enhanced protein 2 LENGTH=202	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf01596g01004.1	AT3G17840.1	****	receptor-like kinase 902 LENGTH=647	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf16079g00002.1	sp|P23433|E13D_TOBAC	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf10735g00019.1	sp|A4XPI6|BETB_PSEMY	****	NAD/NADP-dependent betaine aldehyde dehydrogenase	IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf01938g04007.1	sp|P43186|BEV1M_BETPN	***-	Major pollen allergen Bet v 1-M/N	IPR000916 (Bet v I domain), IPR023393 (START-like domain), IPR024949 (Bet v I type allergen)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf07035g01006.1	gb|AAX38236.1|	*-*-	strictosidine synthase family protein [Brassica napus]	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf03326g01009.1	sp|Q9M9M4|CSLD3_ARATH	****	Cellulose synthase-like protein D3	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf21560g01001.1	AT5G51160.1	***-	Ankyrin repeat family protein LENGTH=442	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	GO:0005515 (protein binding)
Niben101Scf01984g00020.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06936g02002.1	AT1G64850.1	****	Calcium-binding EF hand family protein LENGTH=162	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00679g08006.1	sp|Q504M8|RAB26_MOUSE	*-*-	Ras-related protein Rab-26	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf02731g04005.1	AT2G33620.1	*-**	AT hook motif DNA-binding family protein LENGTH=351	IPR005175 (Domain of unknown function DUF296), IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Scf00952g03008.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf12541g00020.1	ref|XP_002523549.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF38888.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02408g00019.1	sp|Q93YN0|SCO2_ARATH	***-	Protein disulfide-isomerase SCO2		
Niben101Scf02477g00021.1	sp|P18632|PLY1_CRYJA	***-	Pectate lyase 1	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf15594g00016.1	sp|Q6IE26|EPHX4_MOUSE	***-	Epoxide hydrolase 4	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf00494g04005.1	tpg|DAA52082.1|	--*-	TPA: remorin [Zea mays]	IPR005516 (Remorin, C-terminal)	
Niben101Scf00702g00053.1	ref|YP_002608363.1|	*-*-	PSII 32 kDa protein [Vitis vinifera] emb|CAQ77603.1| PSII 32 kDa protein [Vitis vinifera] gb|ACS15235.1| PSII 32 kDa protein [Vitis vinifera]		
Niben101Scf00352g03001.1	emb|CDX74441.1|	*-*-	BnaA04g09480D [Brassica napus]	IPR007770 (Protein of unknown function DUF679)	
Niben101Scf02915g02002.1	ref|NP_001263854.1|	--*-	Protein LEA-1, isoform p [Caenorhabditis elegans] emb|CCH63939.1| Protein LEA-1, isoform p [Caenorhabditis elegans]		
Niben101Scf04926g06005.1	AT3G54190.1	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=467	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01369g05021.1	AT2G33640.1	****	DHHC-type zinc finger family protein LENGTH=565	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf02639g01005.1	ref|XP_003589307.1|	***-	F-box/FBD/LRR-repeat protein [Medicago truncatula]	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf04886g04010.1	AT2G37585.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=384	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf03634g03005.1			Unknown protein		
Niben101Scf08526g00003.1	sp|P16107|CHSY_PETCR	*-*-	Chalcone synthase	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf09379g01002.1	AT4G34200.1	****	D-3-phosphoglycerate dehydrogenase LENGTH=603	IPR006236 (D-3-phosphoglycerate dehydrogenase), IPR015878 (S-adenosyl-L-homocysteine hydrolase, NAD binding domain), IPR016040 (NAD(P)-binding domain), IPR029009 (Allosteric substrate binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1), IPR029753 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site)	GO:0004617 (phosphoglycerate dehydrogenase activity), GO:0006564 (L-serine biosynthetic process), GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00850g01029.1	AT1G13990.3	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;	IPR021503 (Protein of unknown function DUF3110)	
Niben101Scf00661g01005.1	sp|Q9HSF6|RNH_HALSA	*-**	Ribonuclease HI	IPR009027 (Ribosomal protein L9/RNase H1, N-terminal), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf07888g00002.1	sp|Q9SKN2|DRB2_ARATH	*-*-	Double-stranded RNA-binding protein 2	IPR014720 (Double-stranded RNA-binding domain)	
Niben101Scf08390g03001.1	gb|EMT31863.1|	****	IAA-amino acid hydrolase ILR1-like protein 8 [Aegilops tauschii]	IPR002933 (Peptidase M20)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf03245g08020.1	sp|P19244|HSP41_PEA	*-*-	22.7 kDa class IV heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf08149g00015.1	AT2G26150.1	*-**	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09079g00005.1	AT5G57800.1	****	Fatty acid hydroxylase superfamily LENGTH=632	IPR006694 (Fatty acid hydroxylase), IPR016040 (NAD(P)-binding domain), IPR021940 (Uncharacterised domain Wax2, C-terminal)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09234g03001.1	gb|KEH26552.1|	***-	gibberellin receptor GID1, putative [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf19315g00010.1	sp|B0Z4M2|PSBD_OENAR	*-**	Photosystem II D2 protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf07278g02005.1	sp|Q9FXA3|BH095_ARATH	***-	Transcription factor bHLH95	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04040g09011.1	sp|O82013|HSP21_SOLPE	***-	17.3 kDa class II heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf07666g00002.1	sp|Q9M896|TBL20_ARATH	*-*-	Protein trichome birefringence-like 20	IPR026057 (PC-Esterase)	
Niben101Scf06926g08008.1	sp|Q9M2F1|RS272_ARATH	***-	40S ribosomal protein S27-2	IPR000592 (Ribosomal protein S27e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05615g01014.1	sp|Q9FLV4|Y5248_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain)	
Niben101Scf07935g00006.1	gb|AFW04224.1|	****	phosphoethanolamine N-methyl transferase [Suaeda maritima]	IPR025771 (Phosphoethanolamine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0000234 (phosphoethanolamine N-methyltransferase activity), GO:0006656 (phosphatidylcholine biosynthetic process), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf15120g00007.1	sp|Q9UTK8|GMT_SCHPO	***-	GDP-mannose transporter	IPR004853 (Triose-phosphate transporter domain), IPR029665 (GDP-mannose transporter GONST3, plant)	GO:0005794 (Golgi apparatus), GO:0015780 (nucleotide-sugar transport)
Niben101Scf17430g00001.1	sp|Q8L6Y1|UBP14_ARATH	****	Ubiquitin carboxyl-terminal hydrolase 14	IPR009060 (UBA-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016652 (Ubiquitinyl hydrolase), IPR028889 (Ubiquitin specific protease domain)	GO:0005515 (protein binding), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0008242 (omega peptidase activity), GO:0008270 (zinc ion binding), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf02214g02004.1	gb|AAU90303.2|	--**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf01945g01003.1	sp|Q7FNS9|NDHJ_ATRBE	***-	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic		
Niben101Scf02405g03005.1	AT3G56830.1	***-	Protein of unknown function (DUF565) LENGTH=230	IPR007572 (Uncharacterised protein family Ycf20)	
Niben101Scf01204g00035.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01369g00024.1	sp|P25802|CYSP1_OSTOS	****	Cathepsin B-like cysteine proteinase 1	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf06501g02013.1	sp|P17066|HSP76_HUMAN	***-	Heat shock 70 kDa protein 6	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain)	
Niben101Scf02902g04009.1	AT1G30460.1	*-*-	cleavage and polyadenylation specificity factor 30 LENGTH=631	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf04011g11007.1	ref|WP_015952684.1|	--*-	LysR family transcriptional regulator [Methylobacterium extorquens] ref|YP_002423671.1| LysR family transcriptional regulator [Methylobacterium extorquens CM4] gb|ACK85743.1| transcriptional regulator, LysR family [Methylobacterium extorquens CM4]		
Niben101Scf01927g05003.1	sp|Q64LH2|PROF2_AMBAR	*-*-	Profilin-2	IPR005455 (Profilin)	
Niben101Ctg12486g00001.1	AT1G68070.1	*-*-	Zinc finger, C3HC4 type (RING finger) family protein LENGTH=343		
Niben101Scf32020g00001.1	sp|P27061|PPA1_SOLLC	****	Acid phosphatase 1	IPR005519 (Acid phosphatase (Class B)), IPR023214 (HAD-like domain)	GO:0003993 (acid phosphatase activity)
Niben101Scf02216g01017.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf04146g03009.1	sp|A2C6X1|ATPL_PROM3	***-	ATP synthase subunit c	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	
Niben101Scf04926g06004.1	gb|KEH35501.1|	***-	COP1-interacting-like protein, putative [Medicago truncatula]		
Niben101Scf07590g05006.1	AT1G01110.2	***-	IQ-domain 18 LENGTH=527	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf00276g04016.1	AT3G50240.1	****	ATP binding microtubule motor family protein LENGTH=1051	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf14634g01023.1	sp|Q8RWZ7|VHAA1_ARATH	****	V-type proton ATPase subunit a1	IPR002490 (V-type  ATPase, V0 complex, 116kDa subunit family)	GO:0000220 (vacuolar proton-transporting V-type ATPase, V0 domain), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf07123g00018.1	sp|Q9SCY5|KINB2_ARATH	--*-	SNF1-related protein kinase regulatory subunit beta-2		
Niben101Scf05158g01060.1	AT1G48950.1	****	C3HC zinc finger-like LENGTH=594	IPR012935 (Zinc finger, C3HC-like)	GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf06397g02002.1	sp|P42552|S1FA_SPIOL	-***	DNA-binding protein S1FA	IPR006779 (DNA binding protein S1FA)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00394g01008.1	sp|O49686|PYR1_ARATH	***-	Abscisic acid receptor PYR1	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf06819g03010.1	sp|Q9LUE2|TPS18_ARATH	*-**	Terpenoid synthase 18	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf02059g06013.1	sp|Q4L6H3|UBIE_STAHJ	*-**	Demethylmenaquinone methyltransferase	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf02240g00004.1	sp|Q6H5U3|DES1L_ORYSJ	****	Sphingolipid delta(4)-desaturase DES1-like	IPR011388 (Sphingolipid delta4-desaturase)	GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0030148 (sphingolipid biosynthetic process)
Niben101Scf06117g01005.1	sp|Q9SDT1|POR_DAUCA	****	Protochlorophyllide reductase, chloroplastic	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016630 (protochlorophyllide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06837g00016.1	ref|NP_001150356.1|	*-*-	PRKR interacting protein 1 [Zea mays] ref|XP_008658672.1| PREDICTED: PRKR interacting protein 1 isoform X1 [Zea mays] gb|ACG38777.1| PRKR interacting protein 1 [Zea mays] gb|ACN27010.1| unknown [Zea mays] gb|AFW88145.1| PRKR interacting protein 1 [Zea mays]	IPR009548 (Protein of unknown function DUF1168)	
Niben101Scf06509g05019.1	sp|Q8S8N9|GOGC1_ARATH	***-	Golgin candidate 1		
Niben101Scf00132g04012.1	sp|Q943Z6|SRP19_ARATH	****	Signal recognition particle 19 kDa protein	IPR002778 (Signal recognition particle, SRP19 subunit)	GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0048500 (signal recognition particle)
Niben101Scf04117g11004.1	AT5G22510.1	***-	alkaline/neutral invertase LENGTH=617	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf17671g00012.1	sp|G5CEW6|IF4G_WHEAT	*-*-	Eukaryotic translation initiation factor 4G	IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf07313g00004.1	ref|XP_007018274.1|	*-*-	Sas10/Utp3/C1D family isoform 2 [Theobroma cacao] gb|EOY15499.1| Sas10/Utp3/C1D family isoform 2 [Theobroma cacao]		
Niben101Scf16079g00001.1	ref|XP_003625090.1|	*-*-	DNA repair protein recA-like protein [Medicago truncatula] gb|AES81308.1| RecA-like protein [Medicago truncatula]		
Niben101Scf05811g01007.1	gb|KEH23106.1|	*-*-	DUF674 family protein [Medicago truncatula]	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf00090g08011.1	AT4G33400.1	***-	Vacuolar import/degradation, Vid27-related protein LENGTH=645	IPR013863 (Vacuolar import/degradation, Vid27-related), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00538g04001.1	AT3G44380.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=186	IPR004864 (Late embryogenesis abundant protein, LEA-14)	GO:0009269 (response to desiccation)
Niben101Scf11744g01002.1	sp|Q8L8Q3|LBD25_ARATH	***-	LOB domain-containing protein 25	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf00905g01002.1	AT1G03940.1	****	HXXXD-type acyl-transferase family protein LENGTH=469	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf11569g00002.1	sp|Q9LNI5|ETC1_ARATH	--*-	MYB-like transcription factor ETC1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01158g03007.1	sp|Q6L398|PSAA_SACHY	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Ctg15197g00001.1	AT1G45050.1	*-*-	Ubiquitin-conjugating enzyme family protein LENGTH=161	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf01143g01012.1			Unknown protein		
Niben101Scf01784g07016.1	gb|ACX37401.1|	*-**	conserved telomere maintenance component 1 [Arabidopsis thaliana]	IPR028262 (CST complex subunit CTC1, plant), IPR029156 (CST complex subunit CTC1)	GO:0000723 (telomere maintenance), GO:0003697 (single-stranded DNA binding)
Niben101Scf08374g08005.1	sp|Q96MT1|RN145_HUMAN	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02042g00003.1	AT2G18390.1	***-	ADP-ribosylation factor family protein LENGTH=185	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf02310g04014.1	sp|O15514|RPB4_HUMAN	****	DNA-directed RNA polymerase II subunit RPB4	IPR005574 (RNA polymerase II, Rpb4)	GO:0000166 (nucleotide binding), GO:0003824 (catalytic activity), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0044237 (cellular metabolic process)
Niben101Scf07383g12007.1	AT1G05990.1	****	EF hand calcium-binding protein family LENGTH=150	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf08621g06002.1	sp|Q5HZA3|ZCH12_RAT	--**	Zinc finger CCHC domain-containing protein 12	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02929g05114.1			Unknown protein		
Niben101Scf03232g00004.1	sp|Q99KH8|STK24_MOUSE	*-**	Serine/threonine-protein kinase 24	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05295g05012.1	sp|Q24JL3|STR2_ARATH	****	Thiosulfate/3-mercaptopyruvate sulfurtransferase 2	IPR001763 (Rhodanese-like domain)	GO:0004792 (thiosulfate sulfurtransferase activity)
Niben101Scf06133g00005.1	sp|Q402F3|TOM3_TOBAC	*-*-	Tobamovirus multiplication protein 3	IPR009457 (Domain of unknown function DUF1084)	
Niben101Scf06933g02004.1	AT3G22200.2	*-**	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein LENGTH=513	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02059g04005.1	AT2G47910.1	***-	chlororespiratory reduction 6 LENGTH=246	IPR014946 (Protein of unknown function DUF1817)	
Niben101Scf00046g08004.1	sp|A4WUI6|DER_RHOS5	***-	GTPase Der	IPR005225 (Small GTP-binding protein domain), IPR008144 (Guanylate kinase-like), IPR016484 (GTP-binding protein EngA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf01964g01010.1	ref|XP_007016926.1|	***-	F2P16.20 protein, putative isoform 1 [Theobroma cacao] gb|EOY34545.1| F2P16.20 protein, putative isoform 1 [Theobroma cacao]	IPR007308 (Protein of unknown function DUF408)	
Niben101Scf11685g00011.1	sp|Q7VL55|KPRS_HAEDU	****	Ribose-phosphate pyrophosphokinase	IPR005946 (Ribose-phosphate diphosphokinase), IPR029057 (Phosphoribosyltransferase-like), IPR029099 (Ribose-phosphate pyrophosphokinase, N-terminal domain)	GO:0000287 (magnesium ion binding), GO:0004749 (ribose phosphate diphosphokinase activity), GO:0009156 (ribonucleoside monophosphate biosynthetic process), GO:0009165 (nucleotide biosynthetic process), GO:0044249 (cellular biosynthetic process)
Niben101Scf09011g00008.1	sp|Q7MYY7|IF2_PHOLL	--*-	Translation initiation factor IF-2		
Niben101Scf17290g00009.1	AT2G19080.1	***-	metaxin-related LENGTH=315	IPR010987 (Glutathione S-transferase, C-terminal-like)	
Niben101Scf05137g01011.1	sp|Q8BZ03|KPCD2_MOUSE	*-**	Serine/threonine-protein kinase D2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf18793g00004.1	sp|P17772|OSS2_PEA	***-	Organ-specific protein S2	IPR024489 (Organ specific protein)	
Niben101Scf03449g02007.1	sp|Q58DD9|GPN2_PIG	*-*-	GPN-loop GTPase 2	IPR004130 (GPN-loop GTPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02736g01003.1	sp|Q9SIT5|CHX15_ARATH	****	Cation/H(+) antiporter 15	IPR006153 (Cation/H+ exchanger), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf04738g01002.1			Unknown protein		
Niben101Scf19930g00001.1			Unknown protein		
Niben101Scf10342g01025.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03716g00017.1	sp|Q9MB58|F26_ARATH	*-**	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase	IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0006003 (fructose 2,6-bisphosphate metabolic process)
Niben101Scf13186g02006.1	AT4G00880.1	***-	SAUR-like auxin-responsive protein family LENGTH=122	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00779g06009.1	sp|Q9XG54|OPR1_SOLLC	****	12-oxophytodienoate reductase 1	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05437g04011.1	sp|Q8H5F8|ADPRM_ORYSJ	***-	Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf00543g02005.1	sp|Q8L7F9|B3GTF_ARATH	****	Beta-1,3-galactosyltransferase 15	IPR002659 (Glycosyl transferase, family 31), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane), GO:0030246 (carbohydrate binding)
Niben101Scf03424g00015.1	sp|Q56Y52|POT1A_ARATH	***-	Protection of telomeres protein 1a	IPR012340 (Nucleic acid-binding, OB-fold), IPR028389 (Protection of telomeres protein 1)	GO:0000723 (telomere maintenance), GO:0000784 (nuclear chromosome, telomeric region), GO:0003677 (DNA binding), GO:0043047 (single-stranded telomeric DNA binding)
Niben101Scf01958g03008.1	AT4G12570.1	****	ubiquitin protein ligase 5 LENGTH=873	IPR000569 (HECT), IPR019956 (Ubiquitin), IPR029071 (Ubiquitin-related domain)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding)
Niben101Scf01974g00019.1	sp|Q3K9D9|FADA_PSEPF	***-	3-ketoacyl-CoA thiolase	IPR002155 (Thiolase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01550g01014.1	AT2G46620.1	*-*-	P-loop containing nucleoside triphosphate hydrolases superfamily protein LENGTH=491	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf15109g00015.1	emb|CDY59298.1|	--*-	BnaA06g40030D [Brassica napus]	IPR008546 (Domain of unknown function DUF828)	
Niben101Scf03969g05020.1	sp|Q9SHE9|LBD4_ARATH	***-	LOB domain-containing protein 4	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf00777g04013.1	sp|P82715|PPD5_ARATH	*-*-	PsbP domain-containing protein 5, chloroplastic	IPR016123 (Mog1/PsbP, alpha/beta/alpha sandwich)	
Niben101Scf00317g10010.1	gb|AAS91798.1|	--**	Ulp1-like peptidase [Cucumis melo] gb|AAU04774.1| Ulp1 peptidase-like [Cucumis melo]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf07579g00004.1	sp|Q5W7F2|AGD3_ARATH	*-*-	ADP-ribosylation factor GTPase-activating protein AGD3	IPR027267 (Arfaptin homology (AH) domain/BAR domain)	
Niben101Scf11446g00005.1	emb|CDY43324.1|	***-	BnaC03g58960D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf11389g01020.1	sp|Q9FZE0|BGL40_ARATH	***-	Beta-glucosidase 40	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02737g01002.1			Unknown protein		
Niben101Scf04094g00001.1	emb|CDY04596.1|	*-*-	BnaC05g16340D [Brassica napus]		
Niben101Scf02864g09008.1	sp|P62318|SMD3_HUMAN	***-	Small nuclear ribonucleoprotein Sm D3	IPR010920 (Like-Sm (LSM) domain), IPR027141 (U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3)	
Niben101Scf02749g04010.1	AT1G72620.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=335	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04574g02011.1	sp|Q9LSM5|SGT1_ARATH	***-	Protein SGT1 homolog	IPR010770 (SGT1)	
Niben101Scf12935g00022.1	sp|O95696|BRD1_HUMAN	*-*-	Bromodomain-containing protein 1	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf03693g06002.1	sp|O49929|OEP24_PEA	***-	Outer envelope pore protein 24, chloroplastic		
Niben101Scf01922g11012.1	sp|O49816|LEA1_CICAR	*-*-	Late embryogenesis abundant protein 1		
Niben101Scf00291g02023.1	ref|XP_002535248.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF27135.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01808g00015.1	sp|Q9M2F1|RS272_ARATH	*-*-	40S ribosomal protein S27-2	IPR000592 (Ribosomal protein S27e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02929g02028.1	ref|YP_002608343.1|	***-	orf106 [Vitis vinifera] emb|CAQ77566.1| orf106 [Vitis vinifera] gb|ACS15225.1| ORF106 [Vitis vinifera]		
Niben101Scf04503g03014.1			Unknown protein		
Niben101Scf11874g00003.1			Unknown protein		
Niben101Scf02569g04002.1	AT4G22756.1	***-	sterol C4-methyl oxidase 1-2 LENGTH=299	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05588g03002.1	sp|O15514|RPB4_HUMAN	****	DNA-directed RNA polymerase II subunit RPB4	IPR005574 (RNA polymerase II, Rpb4)	GO:0000166 (nucleotide binding), GO:0003824 (catalytic activity), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0044237 (cellular metabolic process)
Niben101Scf03159g00002.1	sp|Q94K41|SDR3B_ARATH	****	Short-chain dehydrogenase reductase 3b	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf18728g00002.1			Unknown protein		
Niben101Scf02165g00002.1	AT1G08030.1	****	tyrosylprotein sulfotransferase LENGTH=500	IPR010635 (Heparan sulphate 6-sulfotransferase/Protein-tyrosine sulfotransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity), GO:0016021 (integral component of membrane)
Niben101Scf07576g00026.1	sp|Q9SVP7|PP307_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02541g06007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03050g04007.1			Unknown protein		
Niben101Scf02974g01009.1	emb|CDY50175.1|	***-	BnaC08g15840D [Brassica napus]		
Niben101Ctg07284g00001.1	ref|NP_001065777.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf01061g07011.1	AT1G30700.1	****	FAD-binding Berberine family protein LENGTH=527	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05973g00001.1	sp|P13940|LEA29_GOSHI	*-*-	Late embryogenesis abundant protein D-29		
Niben101Scf05062g02001.1	AT5G64030.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=829	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf27912g00002.1	gb|KEH32758.1|	*-*-	Non-lysosomal glucosylceramidase [Medicago truncatula]		
Niben101Scf05766g00006.1	AT3G11320.1	***-	Nucleotide-sugar transporter family protein LENGTH=308	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf08149g03006.1	AT5G50740.3	****	Heavy metal transport/detoxification superfamily protein LENGTH=290	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf04800g02001.1	AT4G36830.1	****	GNS1/SUR4 membrane protein family LENGTH=289	IPR002076 (ELO family)	GO:0016021 (integral component of membrane)
Niben101Scf03949g00022.1	sp|Q9SVE5|EXLA2_ARATH	***-	Expansin-like A2	IPR007117 (Expansin, cellulose-binding-like domain), IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf00409g01003.1	sp|O80959|PLP6_ARATH	***-	Patatin-like protein 6	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf09595g04002.1	sp|O70472|TM131_MOUSE	*-*-	Transmembrane protein 131	IPR022113 (Protein of unknown function DUF3651, TMEM131)	
Niben101Scf01065g03006.1	sp|P12858|G3PA_PEA	--*-	Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic		
Niben101Scf03088g03011.1	sp|Q9SXD8|PPR90_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02110g00026.1	AT5G45275.1	*-*-	Major facilitator superfamily protein LENGTH=570	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf03475g00010.1	sp|P50699|TLPH_ARATH	*-*-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf01551g00019.1	sp|P35614|ERF1Z_ARATH	****	Eukaryotic peptide chain release factor subunit 1-3	IPR004403 (Peptide chain release factor eRF1/aRF1)	GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf01834g02003.1	AT2G26330.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=976	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf09876g00013.1			Unknown protein		
Niben101Scf05767g03003.1	gb|ADK98189.1|	*-*-	glycosyl hydrolase [Schiedea globosa]		
Niben101Scf03018g14003.1	sp|P59026|PHLC_CLOHA	--*-	Phospholipase C		
Niben101Scf02476g04004.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf08162g00005.1	sp|A5IM98|RL6_THEP1	*-*-	50S ribosomal protein L6	IPR000702 (Ribosomal protein L6)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf07880g03027.1	sp|Q9ZW07|PUM1_ARATH	***-	Pumilio homolog 1	IPR012940 (Nucleic acid binding NABP), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf03872g02005.1	gb|KEH42191.1|	--*-	heavy metal-associated domain protein [Medicago truncatula]		
Niben101Scf05837g03004.1	AT5G09620.1	*-*-	Octicosapeptide/Phox/Bem1p family protein LENGTH=531		
Niben101Scf09417g00003.1	sp|Q05069|FABI_NOSS1	***-	Enoyl-[acyl-carrier-protein] reductase [NADH] FabI	IPR002347 (Glucose/ribitol dehydrogenase)	
Niben101Scf01822g16013.1	sp|Q2YDC9|PDCD2_BOVIN	***-	Programmed cell death protein 2	IPR002893 (Zinc finger, MYND-type), IPR007320 (Programmed cell death protein 2, C-terminal)	GO:0005737 (cytoplasm)
Niben101Scf11676g00001.1	AT5G49290.1	***-	receptor like protein 56 LENGTH=908	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf02060g01002.1	gb|ADR30790.1|	***-	hypoia-responsive family protein 1 [Hevea brasiliensis]		
Niben101Scf01463g07017.1	ref|WP_025931453.1|	***-	MULTISPECIES: thiol-disulfide oxidoreductase [Prochlorococcus]	IPR007263 (Protein of unknown function DUF393), IPR012336 (Thioredoxin-like fold)	
Niben101Scf00851g01018.1	AT5G22250.1	***-	Polynucleotidyl transferase, ribonuclease H-like superfamily protein LENGTH=278	IPR006941 (Ribonuclease CAF1), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Scf00358g00016.1	AT1G77260.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=655	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf31507g00002.1	dbj|BAB88214.1|	--*-	chitin synthase [Aspergillus oryzae]	IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding)
Niben101Scf01172g09007.1			Unknown protein		
Niben101Scf00229g02007.1	sp|Q5XGY1|TSR1_XENLA	***-	Pre-rRNA-processing protein TSR1 homolog	IPR007034 (Ribosome biogenesis protein BMS1/TSR1, C-terminal), IPR012948 (AARP2CN), IPR030387 (Bms1/Tsr1-type G domain)	GO:0005634 (nucleus), GO:0042254 (ribosome biogenesis)
Niben101Ctg14792g00004.1	sp|Q9SLD2|DGAT1_ARATH	*-**	Diacylglycerol O-acyltransferase 1	IPR014371 (Sterol O-acyltransferase, ACAT/DAG/ARE types)	GO:0008374 (O-acyltransferase activity)
Niben101Scf03048g00001.1	sp|Q05120|UBIL_NPVOP	--*-	Ubiquitin-like protein	IPR019956 (Ubiquitin), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf15653g01004.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf04411g03008.1	ref|XP_002530085.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF32284.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07162g03025.1	sp|O49255|NAC29_ARATH	*-**	NAC transcription factor 29	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02438g03005.1	sp|Q5BF53|GWT1_EMENI	****	GPI-anchored wall transfer protein 1	IPR009447 (GWT1)	GO:0005789 (endoplasmic reticulum membrane), GO:0006506 (GPI anchor biosynthetic process), GO:0016021 (integral component of membrane), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf06807g00011.1	sp|Q9BTT6|LRRC1_HUMAN	*-*-	Leucine-rich repeat-containing protein 1	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf05551g03006.1	sp|Q43143|PMEU1_SOLLC	*-**	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf01100g00009.1	sp|Q9C8T7|PP101_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf15235g00001.1			Unknown protein		
Niben101Scf01997g01013.1	sp|Q9VJY6|RL24_DROME	--*-	60S ribosomal protein L24	IPR000988 (Ribosomal protein L24e-related), IPR023441 (Ribosomal protein L24e domain)	GO:0042254 (ribosome biogenesis)
Niben101Scf06439g01006.1	sp|Q9LS45|PCR5_ARATH	***-	Protein PLANT CADMIUM RESISTANCE 5	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf01422g00006.1	gb|KEH41291.1|	--*-	guanine nucleotide-binding-like protein [Medicago truncatula]		
Niben101Scf02116g00010.1	sp|Q5BJZ6|CI041_RAT	*-*-	UPF0586 protein C9orf41 homolog	IPR012901 (N2227-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf05025g11025.1	sp|Q5RBU2|RM46_PONAB	*-*-	39S ribosomal protein L46, mitochondrial	IPR021757 (Ribosomal protein L46)	
Niben101Scf02929g00072.1			Unknown protein		
Niben101Scf00471g01002.1			Unknown protein		
Niben101Scf10431g00005.1	sp|A6VGV7|RS10_METM7	****	30S ribosomal protein S10	IPR001848 (Ribosomal protein S10), IPR027486 (Ribosomal protein S10 domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf05827g03010.1	sp|Q8D254|SSB_WIGBR	*-**	Single-stranded DNA-binding protein	IPR000424 (Primosome PriB/single-strand DNA-binding)	GO:0003697 (single-stranded DNA binding), GO:0006260 (DNA replication)
Niben101Scf15166g01004.1	sp|Q6NUB2|CW15A_XENLA	*-*-	Protein CWC15 homolog A	IPR006973 (Pre-mRNA-splicing factor  Cwf15/Cwc15)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf04655g02010.1	sp|P06003|PSBC_SPIOL	*-**	Photosystem II CP43 reaction center protein	IPR000484 (Photosynthetic reaction centre, L/M), IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0009772 (photosynthetic electron transport in photosystem II), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf03371g01010.1	ref|NP_001045280.1|	***-	product [Oryza sativa Japonica Group]	IPR022227 (Protein of unknown function DUF3754)	
Niben101Scf29015g00003.1	sp|P93531|C71D7_SOLCH	*-*-	Cytochrome P450 71D7	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11774g00001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09577g01003.1	sp|Q6DG36|ZNT5_DANRE	*-**	Zinc transporter 5	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf20270g00003.1	sp|P61242|YCF2_SOLLC	*-*-	Protein Ycf2		
Niben101Scf01395g01004.1	sp|Q9C5Q8|HEN1_ARATH	****	Small RNA 2'-O-methyltransferase	IPR006630 (RNA-binding protein Lupus La), IPR014720 (Double-stranded RNA-binding domain), IPR026610 (3'-RNA ribose 2'-O-methyltransferase, Hen1), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0001510 (RNA methylation), GO:0008171 (O-methyltransferase activity), GO:0008173 (RNA methyltransferase activity)
Niben101Scf00435g05003.1	AT5G42570.1	****	B-cell receptor-associated 31-like LENGTH=218	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf00509g00011.1	sp|A1XGT0|YCF2_RANMC	*-*-	Protein Ycf2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03595g09002.1	sp|Q9SVP7|PP307_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04607g02007.1	AT4G01810.1	*-*-	Sec23/Sec24 protein transport family protein LENGTH=880		
Niben101Scf03993g03013.1	sp|Q9M376|VA727_ARATH	****	Vesicle-associated membrane protein 727	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf01956g09001.1	sp|Q9AWM9|RPF2_ORYSJ	***-	Ribosome production factor 2 homolog	IPR007109 (Brix domain)	
Niben101Scf17753g00005.1	sp|A5IMA9|RS11_THEP1	--*-	30S ribosomal protein S11	IPR001971 (Ribosomal protein S11)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07440g02008.1	sp|Q2KJI2|STT3A_BOVIN	*-*-	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	IPR003674 (Oligosaccharyl transferase, STT3 subunit)	GO:0004576 (oligosaccharyl transferase activity), GO:0006486 (protein glycosylation), GO:0016020 (membrane)
Niben101Scf06042g01001.1	sp|A2XA73|GRF1_ORYSI	--*-	Growth-regulating factor 1		
Niben101Scf01938g01003.1	AT3G25730.1	*-**	ethylene response DNA binding factor 3 LENGTH=333	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf08987g00013.1	AT4G32160.1	***-	Phox (PX) domain-containing protein LENGTH=723	IPR001683 (Phox homologous domain)	GO:0035091 (phosphatidylinositol binding)
Niben101Scf02384g00003.1	AT2G33845.1	***-	Nucleic acid-binding, OB-fold-like protein LENGTH=182	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf06517g00007.1	sp|Q6Z6W2|MAD57_ORYSJ	*-*-	MADS-box transcription factor 57	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00082g08002.1	sp|Q6DJ05|P2R3C_XENTR	*-*-	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01182g06006.1	sp|Q8BR27|F214B_MOUSE	*-*-	Protein FAM214B	IPR025261 (Domain of unknown function DUF4210)	
Niben101Scf03766g10009.1	AT5G40510.1	*-*-	Sucrase/ferredoxin-like family protein LENGTH=333	IPR012336 (Thioredoxin-like fold), IPR030108 (Actin patches distal protein 1)	
Niben101Scf16660g00001.1	AT1G18440.1	****	Peptidyl-tRNA hydrolase family protein LENGTH=288	IPR001328 (Peptidyl-tRNA hydrolase)	GO:0004045 (aminoacyl-tRNA hydrolase activity)
Niben101Scf07013g00007.1	sp|P51833|RNC_BACSU	*-**	Ribonuclease 3	IPR000999 (Ribonuclease III domain)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0006396 (RNA processing)
Niben101Scf02821g02003.1	sp|A4GGE1|YCF2_PHAVU	--*-	Protein Ycf2		
Niben101Scf01017g05007.1	AT3G02640.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=185		
Niben101Scf00612g02022.1	sp|P42784|CTPA_SYNP2	***-	Carboxyl-terminal-processing protease	IPR004447 (C-terminal-processing peptidase S41A), IPR029045 (ClpP/crotonase-like domain)	GO:0005515 (protein binding), GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf24608g00010.1	sp|Q93ZY2|ROGF1_ARATH	****	Rop guanine nucleotide exchange factor 1	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf02063g04004.1	sp|Q6ZSG1|RN165_HUMAN	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00446g09005.1	AT1G43770.2	*-*-	RING/FYVE/PHD zinc finger superfamily protein LENGTH=431	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf01999g04007.1	sp|P29545|EF1B_ORYSJ	*-**	Elongation factor 1-beta	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR014717 (Translation elongation factor EF1B/ribosomal protein S6)	GO:0003746 (translation elongation factor activity), GO:0005853 (eukaryotic translation elongation factor 1 complex), GO:0006414 (translational elongation)
Niben101Scf14323g00003.1	sp|Q9LNW3|P2C03_ARATH	***-	Protein phosphatase 2C 3	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf03363g01020.1	sp|Q9R207|NBN_MOUSE	*-*-	Nibrin	IPR001357 (BRCT domain), IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf03941g01004.1			Unknown protein		
Niben101Scf18898g00012.1	sp|Q05B92|TFE3_BOVIN	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf11646g03020.1	sp|Q00391|FRHB_METVO	*-*-	Coenzyme F420 hydrogenase subunit beta	IPR007516 (Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal), IPR007525 (Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal), IPR011254 (Prismane-like)	GO:0003824 (catalytic activity), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02502g00002.1	AT2G28085.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=124	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf04028g01007.1	AT4G26240.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=198		
Niben101Scf01991g05014.1	sp|Q9FMR0|PER60_ARATH	*-**	Peroxidase 60	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04160g00012.1	sp|Q4V7B8|RNF44_RAT	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03830g03006.1	gb|AEW48197.1|	*-*-	disease resistance protein RGH3 [Solanum x edinense]		
Niben101Scf10228g01022.1	emb|CDX91353.1|	*-*-	BnaC04g07970D [Brassica napus]		
Niben101Scf10475g00001.1			Unknown protein		
Niben101Scf01154g00011.1	AT4G23490.1	***-	Protein of unknown function (DUF604) LENGTH=526	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf08683g00002.1	sp|Q9LZQ1|TBL6_ARATH	***-	Protein trichome birefringence-like 6	IPR026057 (PC-Esterase)	
Niben101Scf03574g00027.1	sp|Q9SSQ2|FB55_ARATH	***-	F-box protein	IPR017451 (F-box associated interaction domain)	
Niben101Scf01848g00002.1	ref|XP_007029474.1|	****	Single-stranded nucleic acid binding R3H protein, putative isoform 2 [Theobroma cacao] gb|EOY09976.1| Single-stranded nucleic acid binding R3H protein, putative isoform 2 [Theobroma cacao]	IPR001374 (Single-stranded nucleic acid binding R3H)	GO:0003676 (nucleic acid binding)
Niben101Scf11108g00008.1	sp|Q9LYG9|MSL10_ARATH	***-	Mechanosensitive ion channel protein 10	IPR006685 (Mechanosensitive ion channel MscS), IPR010920 (Like-Sm (LSM) domain)	GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf08791g00001.1	AT1G07640.3	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=339	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06909g02001.1	sp|P0CC38|NU2C1_CALFG	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Ctg13650g00002.1	ref|XP_007022698.1|	*-*-	Phototropic-responsive NPH3 family protein, putative [Theobroma cacao] gb|EOY14223.1| Phototropic-responsive NPH3 family protein, putative [Theobroma cacao]		
Niben101Scf03574g00025.1	sp|O93866|HSP70_TRIRU	*-*-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family)	
Niben101Scf11122g00007.1	AT4G25190.2	***-	Family of unknown function (DUF566) LENGTH=395	IPR007573 (Protein of unknown function DUF566)	
Niben101Scf01374g07010.1	gb|AET01484.2|	***-	Avr9/Cf-9 rapidly elicited protein [Medicago truncatula]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf00866g00008.1	sp|Q9ZPY7|XPO2_ARATH	***-	Exportin-2	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf09813g00009.1	gb|KEH35125.1|	--*-	double-stranded RNA-binding motif protein [Medicago truncatula]		
Niben101Scf01774g02014.1	sp|Q9M2Y0|PSK3_ARATH	-**-	Phytosulfokines 3	IPR009438 (Phytosulfokine)	GO:0005576 (extracellular region), GO:0008083 (growth factor activity), GO:0008283 (cell proliferation)
Niben101Scf02336g02003.1	gb|EMS64599.1|	*-*-	Peroxiredoxin Q, chloroplastic [Triticum urartu]		
Niben101Scf05453g00012.1	sp|O67066|FTSY_AQUAE	*-*-	Signal recognition particle receptor FtsY	IPR000897 (Signal recognition particle, SRP54 subunit, GTPase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane)
Niben101Scf07355g02001.1	AT1G07160.1	***-	Protein phosphatase 2C family protein LENGTH=380	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf03278g02003.1	sp|Q7NZU6|MSBA_CHRVO	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR011527 (ABC transporter type 1, transmembrane domain)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Ctg14573g00004.1	sp|P0CM17|ARF_CRYNB	***-	ADP-ribosylation factor	IPR003579 (Small GTPase superfamily, Rab type), IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf03778g00004.1	gb|KEH18340.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf09547g02003.1	AT2G48140.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=200	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00052g00002.1	sp|B5ZYM1|NUOH_RHILW	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf02433g02008.1	AT4G04320.1	*-**	malonyl-CoA decarboxylase family protein LENGTH=518	IPR007956 (Malonyl-CoA decarboxylase)	GO:0006633 (fatty acid biosynthetic process), GO:0050080 (malonyl-CoA decarboxylase activity)
Niben101Scf02404g02026.1	sp|A7FM84|LEU1_YERP3	--*-	2-isopropylmalate synthase	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf02461g04014.1	sp|Q39548|KSB_CUCMA	*-**	Ent-kaur-16-ene synthase, chloroplastic	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf00228g08002.1	AT3G07350.1	***-	Protein of unknown function (DUF506) LENGTH=298	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf06990g00020.1	sp|Q2T9S3|RPC6_BOVIN	****	DNA-directed RNA polymerase III subunit RPC6	IPR016049 (RNA polymerase Rpc34-like)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf00309g00003.1	AT1G03070.1	*-*-	Bax inhibitor-1 family protein LENGTH=247	IPR006214 (Bax inhibitor 1-related)	
Niben101Scf01068g05003.1	sp|O49663|SAP9_ARATH	-***	Zinc finger A20 and AN1 domain-containing stress-associated protein 9	IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf02030g03008.1	sp|B0BZL2|ATPA1_ACAM1	*-**	ATP synthase subunit alpha 1	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf03584g03003.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04979g02014.1	gb|KEH35704.1|	***-	tapetum determinant protein [Medicago truncatula]		
Niben101Scf02513g03011.1	ref|YP_004927571.1|	*-*-	orf448 (mitochondrion) [Brassica carinata] gb|AEH43586.1| orf448 [Brassica carinata]		
Niben101Scf07895g08001.1	emb|CCA25546.1|	*-*-	phosphatidylinositol kinase putative [Albugo laibachii Nc14]	IPR000270 (Phox/Bem1p), IPR000433 (Zinc finger, ZZ-type), IPR009060 (UBA-like), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf10309g00001.1	sp|Q6RZZ9|KIF13_DICDI	*-**	Kinesin-related protein 13	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf23506g00001.1	sp|A2C6X1|ATPL_PROM3	****	ATP synthase subunit c	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf03363g01022.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg06417g00002.1	sp|P45725|PAL3_ARATH	*-**	Phenylalanine ammonia-lyase 3	IPR001106 (Aromatic amino acid lyase), IPR008948 (L-Aspartase-like), IPR023144 (Phenylalanine ammonia-lyase, shielding domain)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf10737g01003.1	AT4G02370.1	***-	Protein of unknown function, DUF538 LENGTH=167	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf00963g05040.1			Unknown protein		
Niben101Scf09456g00017.1	ref|XP_007039713.1|	***-	Dynamin-like 120 kDa protein, putative isoform 1 [Theobroma cacao] gb|EOY24214.1| Dynamin-like 120 kDa protein, putative isoform 1 [Theobroma cacao]		
Niben101Scf01145g00003.1			Unknown protein		
Niben101Scf12852g02006.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07805g00006.1	sp|Q8WTW3|COG1_HUMAN	***-	Conserved oligomeric Golgi complex subunit 1		
Niben101Ctg03624g00004.1	sp|Q8H157|PTR19_ARATH	*-*-	Protein NRT1/ PTR FAMILY 4.6	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf08127g07002.1	sp|O24160|TGA21_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01253g00005.1	sp|Q66GR3|BH130_ARATH	***-	Transcription factor bHLH130	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00416g05001.1	sp|Q08069|RS8_MAIZE	*-*-	40S ribosomal protein S8	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09578g00002.1	sp|Q6TDP4|KLH17_HUMAN	*-*-	Kelch-like protein 17	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf02909g05012.1	sp|Q058P4|PUB30_ARATH	***-	U-box domain-containing protein 30	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf02915g02003.1	ref|XP_002521572.1|	--*-	late embryogenesis abundant, putative [Ricinus communis] gb|EEF40843.1| late embryogenesis abundant, putative [Ricinus communis]		
Niben101Scf00436g06013.1	ref|NP_001060667.1|	*-*-	product [Oryza sativa Japonica Group]	IPR000772 (Ricin B lectin domain)	
Niben101Scf01594g04001.1	sp|Q9FFN7|DGK2_ARATH	****	Diacylglycerol kinase 2	IPR000756 (Diacylglycerol kinase, accessory domain), IPR001206 (Diacylglycerol kinase, catalytic domain), IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol-binding domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process), GO:0035556 (intracellular signal transduction)
Niben101Scf02249g03014.1	AT3G03140.1	*-*-	Tudor/PWWP/MBT superfamily protein LENGTH=769	IPR000313 (PWWP domain)	
Niben101Scf03676g03011.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02744g00004.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06144g00013.1	AT4G26540.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1091	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf04989g01018.1	ref|XP_002531718.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF30677.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08711g01016.1	AT1G01730.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=224		
Niben101Scf00700g03001.1	AT1G30840.1	*-*-	purine permease 4 LENGTH=382	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf01777g00011.1	sp|Q70Z18|NAP1B_TOBAC	****	Nucleosome assembly protein 1;2	IPR002164 (Nucleosome assembly protein (NAP))	GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf03346g00002.1	sp|Q2MI51|CCSA_SOLLC	****	Cytochrome c biogenesis protein CcsA	IPR002541 (Cytochrome c assembly protein), IPR017562 (Cytochrome c-type biogenesis protein CcsA)	GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf08134g01010.1	sp|P30181|TOP1_ARATH	*-**	DNA topoisomerase 1	IPR001631 (DNA topoisomerase I), IPR013499 (DNA topoisomerase I, eukaryotic-type), IPR025834 (Topoisomerase I C-terminal domain)	GO:0003677 (DNA binding), GO:0003917 (DNA topoisomerase type I activity), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0005694 (chromosome), GO:0006265 (DNA topological change)
Niben101Scf03942g01002.1	gb|KEH27184.1|	***-	Avr9/Cf-9 rapidly elicited protein [Medicago truncatula]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf02399g03005.1	AT2G22590.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=470	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06439g01004.1	sp|Q9LS44|PCR4_ARATH	***-	Protein PLANT CADMIUM RESISTANCE 4	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf01950g02005.1			Unknown protein		
Niben101Scf03000g00008.1	sp|O14653|GOSR2_HUMAN	*-*-	Golgi SNAP receptor complex member 2		
Niben101Scf00558g00004.1	emb|CED79771.1|	*-*-	acetyl-CoA carboxylase beta subunit (chloroplast) [Hesperelaea palmeri]		
Niben101Ctg15329g00001.1	sp|P73133|ARGD_SYNY3	***-	Acetylornithine aminotransferase	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf07590g04008.1	sp|Q9FQ04|XRN4_ARATH	*-*-	5'-3' exoribonuclease 4	IPR027073 (5'-3' exoribonuclease)	
Niben101Scf20973g00002.1			Unknown protein		
Niben101Scf03817g12028.1	sp|P33077|IAA4_ARATH	***-	Auxin-responsive protein IAA4	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf06024g02008.1	sp|O64644|SAP18_ARATH	*-*-	Histone deacetylase complex subunit SAP18	IPR010516 (Sin3 associated polypeptide p18)	
Niben101Scf04643g00003.1	ref|XP_007027428.1|	***-	5\'-AMP-activated protein kinase-related, putative isoform 1 [Theobroma cacao] gb|EOY07930.1| 5\'-AMP-activated protein kinase-related, putative isoform 1 [Theobroma cacao]		
Niben101Scf07875g00014.1			Unknown protein		
Niben101Scf06955g04026.1	emb|CDY68203.1|	***-	BnaCnng58010D [Brassica napus]		
Niben101Scf02724g05020.1	sp|Q6DH42|ENY2_DANRE	****	Transcription and mRNA export factor ENY2	IPR018783 (Transcription factor, enhancer of yellow 2)	GO:0000124 (SAGA complex), GO:0003713 (transcription coactivator activity), GO:0005643 (nuclear pore), GO:0006406 (mRNA export from nucleus), GO:0045893 (positive regulation of transcription, DNA-templated)
Niben101Scf01495g01001.1	sp|P81391|MYB05_ANTMA	*-*-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03015g06001.1	AT1G67080.1	***-	abscisic acid (aba)-deficient 4 LENGTH=220	IPR025461 (Protein of unknown function DUF4281)	
Niben101Scf07839g00002.1	sp|Q9SIS3|MA656_ARATH	****	65-kDa microtubule-associated protein 6	IPR007145 (Microtubule-associated protein, MAP65/Ase1/PRC1)	GO:0000226 (microtubule cytoskeleton organization), GO:0000910 (cytokinesis), GO:0008017 (microtubule binding)
Niben101Scf05554g00015.1	sp|Q43772|UGPA_HORVU	--*-	UTP--glucose-1-phosphate uridylyltransferase		
Niben101Scf01936g07001.1	AT4G39870.1	*-*-	TLD-domain containing nucleolar protein LENGTH=394	IPR006571 (TLDc domain)	
Niben101Scf00986g01009.1	AT5G13410.1	***-	FKBP-like peptidyl-prolyl cis-trans isomerase family protein LENGTH=256	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf06347g00004.1	AT5G25400.1	***-	Nucleotide-sugar transporter family protein LENGTH=349	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf04131g01021.1	AT4G32700.2	*-**	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding LENGTH=2154	IPR004179 (Sec63 domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf02323g00002.1	sp|Q8GXL7|GAT24_ARATH	****	GATA transcription factor 24	IPR010399 (Tify), IPR010402 (CCT domain), IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03345g00011.1	sp|P53611|PGTB2_HUMAN	****	Geranylgeranyl transferase type-2 subunit beta	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR026873 (Geranylgeranyl transferase type-2 subunit beta)	GO:0003824 (catalytic activity), GO:0004663 (Rab geranylgeranyltransferase activity), GO:0018344 (protein geranylgeranylation)
Niben101Scf08819g00016.1	sp|P40818|UBP8_HUMAN	*-**	Ubiquitin carboxyl-terminal hydrolase 8	IPR006615 (Peptidase C19, ubiquitin-specific peptidase, DUSP domain), IPR028134 (Ubiquitin carboxyl-terminal hydrolase USP), IPR028889 (Ubiquitin specific protease domain)	GO:0004843 (ubiquitin-specific protease activity), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0016579 (protein deubiquitination), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Ctg16094g00003.1	sp|Q54UC9|KIF3_DICDI	*-**	Kinesin-related protein 3	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf07590g01014.1			Unknown protein		
Niben101Scf00229g05007.1	sp|A5F0G1|RNB_VIBC3	*-*-	Exoribonuclease 2	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf00080g01007.1	ref|XP_002510079.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52266.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02632g00025.1	AT5G23100.1	***-	Protein of unknown function, DUF617 LENGTH=277	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf09725g00020.1	ref|XP_007030054.1|	****	Nucleic acid binding protein, putative isoform 2 [Theobroma cacao] gb|EOY10556.1| Nucleic acid binding protein, putative isoform 2 [Theobroma cacao]	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01841g01019.1	AT3G27550.1	****	RNA-binding CRS1 / YhbY (CRM) domain protein LENGTH=491	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf02525g05005.1	sp|A7MFA8|BETA_CROS8	--*-	Oxygen-dependent choline dehydrogenase	IPR000172 (Glucose-methanol-choline oxidoreductase, N-terminal), IPR007867 (Glucose-methanol-choline oxidoreductase, C-terminal)	GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03983g00029.1	AT2G36770.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05385g02004.1	AT1G20430.1	***-	unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=116		
Niben101Scf03265g00012.1	sp|P49098|CYB5_TOBAC	***-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf02971g05002.1	gb|AAS07174.1|	***-	expressed protein [Oryza sativa Japonica Group] gb|ABF97302.1| expressed protein [Oryza sativa Japonica Group] gb|ABF97303.1| expressed protein [Oryza sativa Japonica Group]		
Niben101Scf07140g00015.1			Unknown protein		
Niben101Scf13522g01010.1	sp|Q9SNC6|PUB13_ARATH	***-	U-box domain-containing protein 13	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf15632g00020.1	sp|O24172|ALL6_OLEEU	***-	Major pollen allergen Ole e 6	IPR015333 (Pollen allergen ole e 6)	
Niben101Scf11078g00009.1	sp|Q5FPT6|GLND_GLUOX	--*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf07103g01019.1	sp|A1E9T5|YCF4_SORBI	*-**	Photosystem I assembly protein Ycf4	IPR003359 (Photosystem I Ycf4, assembly), IPR004282 (Chloroplast envelope membrane protein, CemA)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf03561g01025.1	sp|Q65U21|MSBA_MANSM	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf04118g01007.1	ref|XP_003629867.1|	*-**	Interferon-induced GTP-binding protein Mx [Medicago truncatula] gb|AET04343.1| dynamin 4C-like protein [Medicago truncatula]	IPR000375 (Dynamin central domain), IPR022812 (Dynamin superfamily)	GO:0005525 (GTP binding)
Niben101Scf01987g01005.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08482g00017.1	AT2G44870.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=248		
Niben101Scf03362g01008.1	gb|AAF76312.1|AF220603_4	*-*-	Prf [Solanum lycopersicum]		
Niben101Scf04209g02002.1	gb|KEH21192.1|	***-	myosin heavy chain-like protein [Medicago truncatula]		
Niben101Scf00148g01005.1	sp|P83947|PME1_FICPW	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01779g05009.1	ref|WP_031997990.1|	*-*-	esterase [Acinetobacter baumannii] gb|EXE37471.1| beta-lactamase family protein [Acinetobacter baumannii 1546444]	IPR012338 (Beta-lactamase/transpeptidase-like)	
Niben101Scf02914g02043.1	sp|Q8X1X3|G3P_PARBA	***-	Glyceraldehyde-3-phosphate dehydrogenase	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf03840g00006.1	sp|P10482|BGLS_CALSA	***-	Beta-glucosidase A	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07817g01006.1	sp|Q3B736|ATGA1_DANRE	***-	Autophagy-related protein 101	IPR012445 (Autophagy-related protein 1010)	
Niben101Scf08804g01009.1	sp|B1AY10|NFX1_MOUSE	*-*-	Transcriptional repressor NF-X1	IPR000967 (Zinc finger, NF-X1-type), IPR001841 (Zinc finger, RING-type), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR019787 (Zinc finger, PHD-finger)	GO:0000166 (nucleotide binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf00258g02013.1	AT5G39840.1	***-	ATP-dependent RNA helicase, mitochondrial, putative LENGTH=776	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR022192 (Mitochondrial degradasome RNA helicase subunit, C-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0016817 (hydrolase activity, acting on acid anhydrides)
Niben101Scf03404g01008.1	sp|P93026|VSR1_ARATH	***-	Vacuolar-sorting receptor 1	IPR001881 (EGF-like calcium-binding domain), IPR003137 (Protease-associated domain, PA), IPR012336 (Thioredoxin-like fold), IPR026823 (Complement Clr-like EGF domain)	GO:0005509 (calcium ion binding)
Niben101Scf06388g00005.1	ref|XP_002512024.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF50693.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02736g07003.1	sp|A3CT12|RS8_METMJ	***-	30S ribosomal protein S8	IPR000630 (Ribosomal protein S8)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09997g00025.1	AT3G24630.1	*-*-	unknown protein; Has 5348 Blast hits to 3182 proteins in 353 species: Archae - 0; Bacteria - 481; Metazoa - 1959; Fungi - 405; Plants - 180; Viruses - 10; Other Eukaryotes - 2313 (source: NCBI BLink). LENGTH=724	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf02929g02026.1			Unknown protein		
Niben101Scf04503g03016.1	sp|O80402|DCAM_NICSY	--*-	S-adenosylmethionine decarboxylase proenzyme		
Niben101Scf04069g00007.1	sp|E6WHK1|TATD_PANSA	***-	Tat-linked quality control protein TatD	IPR001130 (TatD family)	GO:0016888 (endodeoxyribonuclease activity, producing 5'-phosphomonoesters)
Niben101Scf00862g02052.1	sp|Q8LDS5|THO7A_ARATH	****	THO complex subunit 7A	IPR008501 (THO complex subunit 7/Mft1)	GO:0000445 (THO complex part of transcription export complex), GO:0006397 (mRNA processing)
Niben101Scf00471g02022.1	AT5G17640.1	***-	Protein of unknown function (DUF1005) LENGTH=432	IPR010410 (Protein of unknown function DUF1005)	
Niben101Scf02314g00018.1	sp|Q55721|FBT_SYNY3	***-	Folate-biopterin transporter	IPR004324 (Folate-biopterin transporter)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf01593g05007.1	gb|KEH19553.1|	--*-	animal RPA1 domain protein [Medicago truncatula]		
Niben101Scf00777g03020.1	sp|Q54YG9|TCEA1_DICDI	*-**	Transcription elongation factor A protein 1	IPR003618 (Transcription elongation factor S-II, central domain), IPR012921 (Spen paralogue and orthologue SPOC, C-terminal)	GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf00811g05006.1	sp|Q5BHD6|RAD5_EMENI	*-**	DNA repair protein rad5	IPR000330 (SNF2-related), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf06263g01006.1	gb|AAP54315.2|	--*-	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]		
Niben101Scf02430g12009.1	sp|Q6NKW7|PP164_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02357g07010.1	sp|Q2J419|UBIG_RHOP2	****	Ubiquinone biosynthesis O-methyltransferase	IPR010233 (Ubiquinone biosynthesis O-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006744 (ubiquinone biosynthetic process), GO:0008425 (2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity)
Niben101Scf00820g04003.1	AT5G09430.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=311	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03179g00014.1	AT4G33905.1	****	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein LENGTH=261	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf11802g00009.1	sp|Q5BCC6|BGLC_EMENI	*-*-	Beta-glucosidase C	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04740g01004.1	tpg|DAA35499.1|	--**	TPA: putative MYB DNA-binding domain superfamily protein [Zea mays]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf03321g05006.1	sp|Q56307|BGAL_THEMA	*-*-	Beta-galactosidase	IPR008979 (Galactose-binding domain-like)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf13762g01038.1	sp|Q9LJU7|PPA18_ARATH	****	Purple acid phosphatase 18	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf02132g00016.1	sp|Q9FM19|HIR1_ARATH	***-	Hypersensitive-induced response protein 1	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf03948g00003.1	sp|Q9SZ20|PP339_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00187g01010.1	ref|WP_025922422.1|	*-*-	MULTISPECIES: hypothetical protein [Prochlorococcus]		
Niben101Scf03693g06001.1	sp|Q9CZT4|RPC5_MOUSE	*-**	DNA-directed RNA polymerase III subunit RPC5	IPR006886 (DNA-directed RNA polymerase III subunit Rpc5)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf04339g08004.1	ref|WP_016786451.1|	-**-	Nex18 symbiotically induced protein [Vibrio cyclitrophicus]	IPR000782 (FAS1 domain)	
Niben101Scf01036g04001.1	AT3G15355.1	*-*-	ubiquitin-conjugating enzyme 25 LENGTH=609	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf00073g05010.1	sp|Q9ZV88|BEH4_ARATH	***-	BES1/BZR1 homolog protein 4	IPR008540 (BZR1, transcriptional repressor)	
Niben101Scf07196g01009.1	sp|P23432|E13C_TOBAC	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00143g00007.1	AT5G49890.1	****	chloride channel C LENGTH=779	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00661g01004.1	ref|WP_026136007.1|	*-*-	thiol-disulfide oxidoreductase DCC [Paenibacillus sp. A9]	IPR007263 (Protein of unknown function DUF393)	
Niben101Scf03716g00015.1	sp|P92985|RBP1C_ARATH	****	Ran-binding protein 1 homolog c	IPR011993 (Pleckstrin homology-like domain)	GO:0046907 (intracellular transport)
Niben101Scf10342g01027.1	sp|Q9ZVX5|PP156_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08394g00002.1	ref|XP_002311412.1|	--*-	18S pre-rib gar2 [Populus trichocarpa]		
Niben101Scf21787g00003.1	AT5G07990.1	*-*-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00579g00005.1	sp|Q7WKG2|AQPZ_BORBR	*-*-	Aquaporin Z	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03570g01005.1	sp|Q82UC1|APAG_NITEU	*-*-	Protein ApaG	IPR001810 (F-box domain), IPR007474 (ApaG domain), IPR018958 (SMI1/KNR4 like domain)	GO:0005515 (protein binding)
Niben101Scf08390g02015.1	emb|CDY24887.1|	*-*-	BnaA03g59910D [Brassica napus]		
Niben101Scf05483g00007.1	sp|Q8GX46|BH091_ARATH	***-	Transcription factor bHLH91	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02098g02018.1	sp|Q9D3W4|GPN3_MOUSE	***-	GPN-loop GTPase 3	IPR004130 (GPN-loop GTPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf05032g02004.1	sp|Q9FVW4|RENT3_ARATH	***-	Regulator of nonsense transcripts UPF3	IPR005120 (Regulator of nonsense-mediated decay, UPF3)	GO:0000166 (nucleotide binding)
Niben101Scf06008g01017.1	sp|Q9S823|LNG2_ARATH	***-	Protein LONGIFOLIA 2	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf06848g10002.1	AT1G71480.1	*-*-	Nuclear transport factor 2 (NTF2) family protein LENGTH=216	IPR009959 (Polyketide cyclase SnoaL-like domain)	
Niben101Scf10595g01002.1	sp|A6X2G7|BETA_OCHA4	****	Oxygen-dependent choline dehydrogenase	IPR012132 (Glucose-methanol-choline oxidoreductase)	GO:0006066 (alcohol metabolic process), GO:0008812 (choline dehydrogenase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10067g02023.1	sp|Q9ZW07|PUM1_ARATH	***-	Pumilio homolog 1	IPR012940 (Nucleic acid binding NABP), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf01056g04005.1	gb|ADM75415.1|	***-	late embryogenesis abundant-like protein, partial [Picea sitchensis]	IPR009646 (Root cap)	
Niben101Scf03385g03004.1	sp|A9A3A9|DPO4_NITMS	*-**	DNA polymerase IV	IPR001126 (DNA-repair protein, UmuC-like)	GO:0003684 (damaged DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006281 (DNA repair)
Niben101Scf10528g02001.1	sp|Q8VX13|PDI13_ARATH	****	Protein disulfide isomerase-like 1-3	IPR005792 (Protein disulphide isomerase), IPR012336 (Thioredoxin-like fold)	GO:0005783 (endoplasmic reticulum), GO:0016853 (isomerase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00508g05008.1	sp|O97555|GDIA_CANFA	*-*-	Rab GDP dissociation inhibitor alpha	IPR018203 (GDP dissociation inhibitor)	
Niben101Scf00749g05008.1	emb|CDX78779.1|	***-	BnaA03g06910D [Brassica napus]		
Niben101Ctg15138g00004.1	sp|Q8VDB8|LRRC2_MOUSE	*-*-	Leucine-rich repeat-containing protein 2	IPR001611 (Leucine-rich repeat), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf02864g02001.1	sp|Q7UUZ7|FTSH1_RHOBA	*-**	ATP-dependent zinc metalloprotease FtsH 1	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf03491g01021.1	AT1G42550.1	***-	plastid movement impaired1 LENGTH=843	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf05177g01002.1	AT5G23370.1	***-	GRAM domain-containing protein / ABA-responsive protein-related LENGTH=219	IPR004182 (GRAM domain)	
Niben101Scf11183g00001.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02407g09003.1	sp|Q41001|BCP_PEA	*-*-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf06704g00002.1	sp|Q3BAR4|PSBA_PHAAO	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf02474g01021.1	sp|P31414|AVP1_ARATH	****	Pyrophosphate-energized vacuolar membrane proton pump 1	IPR004131 (Pyrophosphate-energised proton pump)	GO:0004427 (inorganic diphosphatase activity), GO:0009678 (hydrogen-translocating pyrophosphatase activity), GO:0015992 (proton transport), GO:0016020 (membrane)
Niben101Scf00613g04012.1	sp|Q8LED3|TBL3_ARATH	***-	Protein trichome birefringence-like 3	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf05357g00008.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00454g00002.1	sp|Q14498|RBM39_HUMAN	*-**	RNA-binding protein 39	IPR001878 (Zinc finger, CCHC-type), IPR004087 (K Homology domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0008270 (zinc ion binding)
Niben101Scf10219g00006.1	AT4G24130.1	***-	Protein of unknown function, DUF538 LENGTH=157	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf06936g02003.1	sp|Q84TK1|BH010_ARATH	--*-	Transcription factor bHLH10		
Niben101Scf16663g00002.1	sp|Q9SKK0|EBF1_ARATH	****	EIN3-binding F-box protein 1	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf06394g08021.1	sp|Q10173|NUF2_SCHPO	*-*-	Kinetochore protein nuf2	IPR005549 (Kinetochore protein Nuf2)	GO:0000775 (chromosome, centromeric region), GO:0007067 (mitotic nuclear division)
Niben101Scf07528g01009.1	emb|CDX87860.1|	--*-	BnaC06g09220D [Brassica napus]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf05830g06011.1			Unknown protein		
Niben101Scf04412g00015.1			Unknown protein		
Niben101Scf02133g00004.1	sp|Q8VXV7|LDL1_ARATH	***-	Lysine-specific histone demethylase 1 homolog 1	IPR001613 (Flavin amine oxidase), IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR016040 (NAD(P)-binding domain)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07355g01009.1	AT1G33590.1	***-	Leucine-rich repeat (LRR) family protein LENGTH=477	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Ctg05484g00004.1	sp|Q8N283|ANR35_HUMAN	--*-	Ankyrin repeat domain-containing protein 35	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf14299g00021.1	emb|CDY08793.1|	***-	BnaA06g24310D [Brassica napus]		
Niben101Scf01509g02020.1	gb|AET78921.1|	***-	At3g23590-like protein [Arabidopsis halleri]		
Niben101Scf35993g00002.1	gb|ABO80459.1|	--*-	RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf04719g00002.1	AT3G20020.1	****	protein arginine methyltransferase 6 LENGTH=435	IPR010456 (Ribosomal L11 methyltransferase, PrmA), IPR025799 (Protein arginine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005737 (cytoplasm), GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity), GO:0008276 (protein methyltransferase activity)
Niben101Scf00702g00052.1	sp|P68540|COX1_AEGCO	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13186g01003.1	ref|NP_001148114.1|	*-**	transferase, transferring glycosyl groups precursor [Zea mays] gb|ACG29772.1| transferase, transferring glycosyl groups [Zea mays]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf08330g02001.1	sp|Q9ZPQ5|SOT13_ARATH	*-*-	Cytosolic sulfotransferase 13	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01213g00005.1	sp|P48000|KNAT3_ARATH	***-	Homeobox protein knotted-1-like 3	IPR005539 (ELK), IPR005540 (KNOX1), IPR005541 (KNOX2), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02831g01005.1			Unknown protein		
Niben101Scf00066g02006.1	AT2G29060.1	***-	GRAS family transcription factor LENGTH=694	IPR005202 (Transcription factor GRAS)	
Niben101Scf00742g01039.1	AT1G61210.1	*-*-	Transducin/WD40 repeat-like superfamily protein LENGTH=1181	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR026962 (Katanin p80 subunit B1)	GO:0005515 (protein binding), GO:0008017 (microtubule binding), GO:0008352 (katanin complex), GO:0051013 (microtubule severing)
Niben101Scf13863g00014.1	sp|Q84MA3|PP345_ARATH	--*-	Pentatricopeptide repeat-containing protein At4g32430, mitochondrial		
Niben101Scf11954g01001.1	AT2G36430.1	***-	Plant protein of unknown function (DUF247) LENGTH=448	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf07294g00014.1	sp|Q9SF29|SYP71_ARATH	***-	Syntaxin-71	IPR000727 (Target SNARE coiled-coil domain)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane)
Niben101Scf00108g03002.1	AT4G26180.1	***-	Mitochondrial substrate carrier family protein LENGTH=325	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf04040g00003.1			Unknown protein		
Niben101Scf07313g00003.1			Unknown protein		
Niben101Scf09379g01003.1	sp|Q1GTB8|KYNB_SPHAL	****	Kynurenine formamidase	IPR007325 (Kynurenine formamidase)	GO:0004061 (arylformamidase activity), GO:0019441 (tryptophan catabolic process to kynurenine)
Niben101Scf01338g03019.1	AT3G25690.1	*-*-	Hydroxyproline-rich glycoprotein family protein LENGTH=1004		
Niben101Scf06064g03013.1	AT1G65790.1	*-**	receptor kinase 1 LENGTH=843	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04040g09012.1	sp|Q01545|HSP22_IPONI	***-	18.8 kDa class II heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf20953g00012.1	AT2G46100.1	***-	Nuclear transport factor 2 (NTF2) family protein LENGTH=240	IPR018790 (Protein of unknown function DUF2358)	
Niben101Scf08586g00001.1	sp|P10582|DPOM_MAIZE	*-**	DNA polymerase	IPR004868 (DNA-directed DNA polymerase, family B, mitochondria/virus), IPR012337 (Ribonuclease H-like domain), IPR023211 (DNA polymerase, palm domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf01611g01004.1	ref|NP_001078571.1|	--*-	protein NONRESPONDING TO OXYLIPINS 2 [Arabidopsis thaliana] gb|AAR24160.1| [Arabidopsis thaliana] gb|AAR92303.1| [Arabidopsis thaliana] gb|AED91704.1| uncharacterized protein [Arabidopsis thaliana]		
Niben101Scf00046g08003.1	AT3G01710.1	*-*-	TPX2 (targeting protein for Xklp2) protein family LENGTH=391	IPR027329 (TPX2, C-terminal domain)	
Niben101Scf04011g11006.1			Unknown protein		
Niben101Scf03576g01032.1	AT5G17560.1	*-*-	BolA-like family protein LENGTH=177	IPR002634 (BolA protein)	
Niben101Scf09262g01013.1	sp|Q2JL42|CH10_SYNJB	*-*-	10 kDa chaperonin	IPR020818 (Chaperonin Cpn10)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding)
Niben101Scf13098g00012.1	sp|Q9SZD1|TCX5_ARATH	***-	Protein tesmin/TSO1-like CXC 5	IPR005172 (CRC domain), IPR028307 (Lin-54 family)	
Niben101Scf05749g02030.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02740g03004.1	sp|Q5JPI9|MET10_HUMAN	*-**	Methyltransferase-like protein 10	IPR026635 (N-lysine methyltransferase See1-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02842g00023.1	sp|Q8LAU9|GATA1_ARATH	*-**	GATA transcription factor 1	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04146g03008.1	sp|A2C6X1|ATPL_PROM3	***-	ATP synthase subunit c	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	
Niben101Scf07511g02006.1	sp|Q8GWK2|AP2L4_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR001471 (AP2/ERF domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01479g01006.1	sp|Q9FWX2|NAC7_ARATH	*-*-	NAC domain-containing protein 7	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05396g07013.1	sp|P05414|GOX_SPIOL	*-*-	Peroxisomal (S)-2-hydroxy-acid oxidase	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf05111g00009.1	AT2G21940.4	***-	shikimate kinase 1 LENGTH=304	IPR000623 (Shikimate kinase/Threonine synthase-like 1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02123g02006.1	sp|Q7F8R0|C3H14_ORYSJ	***-	Zinc finger CCCH domain-containing protein 14	IPR000571 (Zinc finger, CCCH-type), IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0046872 (metal ion binding)
Niben101Scf03300g00003.1	AT2G15780.1	*-*-	Cupredoxin superfamily protein LENGTH=257	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf06222g01018.1			Unknown protein		
Niben101Scf06837g00017.1	sp|Q2KIT1|PKRI1_BOVIN	--*-	PRKR-interacting protein 1	IPR009548 (Protein of unknown function DUF1168)	
Niben101Scf07515g03006.1	sp|O55012|PICAL_RAT	*-**	Phosphatidylinositol-binding clathrin assembly protein	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf03491g01022.1	AT5G05830.1	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=204	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf00337g09003.1			Unknown protein		
Niben101Scf05811g01006.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01818g04014.1	AT1G21720.1	****	proteasome beta subunit C1 LENGTH=204	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf01191g01010.1	sp|Q75HV0|CCP31_ORYSJ	****	Cyclin-P3-1	IPR013763 (Cyclin-like), IPR013922 (Cyclin PHO80-like)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0019901 (protein kinase binding)
Niben101Scf06388g02008.1	sp|Q96MT1|RN145_HUMAN	*-*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01999g04006.1	AT2G26760.1	****	Cyclin B1;4 LENGTH=387	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf08933g00003.1	sp|Q66HG1|DMTF1_RAT	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Ctg03218g00004.1	sp|Q4L3I4|CLPC_STAHJ	*-**	ATP-dependent Clp protease ATP-binding subunit ClpC	IPR001943 (UVR domain)	GO:0005515 (protein binding)
Niben101Scf02737g01001.1	sp|Q9Y6U7|RN215_HUMAN	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05216g09022.1			Unknown protein		
Niben101Scf00613g04011.1	sp|Q8VYP0|SCO11_ARATH	****	Protein SCO1 homolog 1, mitochondrial	IPR003782 (Copper chaperone SCO1/SenC), IPR012336 (Thioredoxin-like fold)	GO:0005507 (copper ion binding), GO:0005743 (mitochondrial inner membrane), GO:0006825 (copper ion transport), GO:0006878 (cellular copper ion homeostasis), GO:0008535 (respiratory chain complex IV assembly)
Niben101Scf02753g00002.1	ref|XP_002530403.1|	****	carbohydrate binding protein, putative [Ricinus communis] gb|EEF31973.1| carbohydrate binding protein, putative [Ricinus communis]	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0030246 (carbohydrate binding)
Niben101Scf00905g01001.1	sp|Q9FI80|PP425_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01784g07015.1	AT2G24650.1	*-**	DNA binding;DNA binding;sequence-specific DNA binding transcription factors LENGTH=1045	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf01349g03014.1	AT1G49180.1	*-**	protein kinase family protein LENGTH=408	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10753g01015.1	sp|Q9LYP4|BAG3_ARATH	****	BAG family molecular chaperone regulator 3	IPR003103 (BAG domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf05295g05011.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000742 (Epidermal growth factor-like domain), IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf00446g02004.1	AT1G48880.1	***-	TRICHOME BIREFRINGENCE-LIKE 7 LENGTH=445	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Ctg12119g00002.1	AT3G50390.1	*-*-	Transducin/WD40 repeat-like superfamily protein LENGTH=469	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01683g05011.1	sp|Q9FPS0|UBP27_ARATH	*-**	Ubiquitin carboxyl-terminal hydrolase 27	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf08621g06003.1			Unknown protein		
Niben101Scf07576g00025.1	AT2G46060.1	***-	transmembrane protein-related LENGTH=807	IPR000742 (Epidermal growth factor-like domain), IPR021910 (Protein of unknown function DUF3522)	GO:0005515 (protein binding)
Niben101Scf03050g04006.1	sp|P74038|RSMI_SYNY3	****	Ribosomal RNA small subunit methyltransferase I	IPR000878 (Tetrapyrrole methylase), IPR008189 (rRNA small subunit methyltransferase I)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf07660g00002.1			Unknown protein		
Niben101Scf01365g01001.1	sp|Q9NW13|RBM28_HUMAN	--**	RNA-binding protein 28	IPR008111 (RNA-binding motif protein 8), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006396 (RNA processing)
Niben101Scf01204g00036.1	sp|P22806|BIOF_LYSSH	***-	8-amino-7-oxononanoate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00820g07004.1	sp|Q9ASU1|DGAT2_ARATH	*-*-	Diacylglycerol O-acyltransferase 2		
Niben101Scf06817g00017.1	sp|B3PW00|NUOD1_RHIE6	****	NADH-quinone oxidoreductase subunit D 1	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00109g03008.1	sp|Q9NZC3|GDE1_HUMAN	--*-	Glycerophosphodiester phosphodiesterase 1	IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain)	GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Scf03403g02027.1	emb|CDY52515.1|	***-	BnaC03g61080D [Brassica napus]		
Niben101Scf05710g00012.1	sp|Q7XJN6|PP197_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05137g01010.1	AT3G53900.2	****	uracil phosphoribosyltransferase LENGTH=296	IPR005765 (Uracil phosphoribosyl transferase), IPR029057 (Phosphoribosyltransferase-like)	GO:0004845 (uracil phosphoribosyltransferase activity), GO:0006223 (uracil salvage)
Niben101Scf04739g00001.1	sp|Q651X6|CSLE6_ORYSJ	****	Cellulose synthase-like protein E6	IPR005150 (Cellulose synthase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf01927g05004.1	sp|A4GFC2|PROCF_OLEEU	***-	Profilin-4	IPR005455 (Profilin), IPR027310 (Profilin conserved site)	GO:0003779 (actin binding)
Niben101Scf03461g00005.1	sp|Q54ND3|UXT_DICDI	*-*-	Protein UXT homolog	IPR009053 (Prefoldin)	
Niben101Ctg14258g00004.1	ref|NP_001053190.1|	***-	product [Oryza sativa Japonica Group]	IPR006946 (Protein of unknown function DUF642)	
Niben101Scf00901g07005.1	sp|P25076|CY11_SOLTU	****	Cytochrome c1-1, heme protein, mitochondrial	IPR002326 (Cytochrome c1)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf02216g01016.1	sp|Q94C11|SUGP1_ARATH	***-	SURP and G-patch domain-containing protein 1-like protein	IPR000061 (SWAP/Surp), IPR000467 (G-patch domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0006396 (RNA processing)
Niben101Scf02230g03026.1	sp|A5DI74|U507_PICGU	--*-	UPF0507 protein PGUG_02975		
Niben101Scf02974g00018.1	sp|P05414|GOX_SPIOL	--*-	Peroxisomal (S)-2-hydroxy-acid oxidase	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf03424g00016.1			Unknown protein		
Niben101Scf02538g05011.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf05664g04010.1	sp|E9QAU8|RN165_MOUSE	*-*-	RING finger protein 165	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07579g00003.1	sp|Q8N2Z9|CENPS_HUMAN	*-*-	Centromere protein S	IPR009072 (Histone-fold), IPR029003 (Kinetochore component CENP-S)	GO:0046982 (protein heterodimerization activity)
Niben101Scf02949g14010.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf01141g07004.1	sp|O48882|ACCO2_MALDO	***-	1-aminocyclopropane-1-carboxylate oxidase 2	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf04629g04002.1	sp|Q8RIR4|RISB_FUSNN	****	6,7-dimethyl-8-ribityllumazine synthase	IPR002180 (6,7-dimethyl-8-ribityllumazine synthase)	GO:0009231 (riboflavin biosynthetic process), GO:0009349 (riboflavin synthase complex)
Niben101Scf00647g00007.1	sp|P0CB42|ALKB1_MOUSE	***-	Alkylated DNA repair protein alkB homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02864g09009.1	sp|P0A9L7|PPIC_ECO57	*-**	Peptidyl-prolyl cis-trans isomerase C	IPR000297 (Peptidyl-prolyl cis-trans isomerase, PpiC-type), IPR023058 (Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site)	GO:0016853 (isomerase activity)
Niben101Scf04574g02012.1	AT2G22560.1	*-*-	Kinase interacting (KIP1-like) family protein LENGTH=947	IPR011684 (KIP1-like)	
Niben101Scf09144g00003.1	AT5G54680.1	***-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=234	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf12866g00004.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11235g02002.1	ref|NP_001042116.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf14809g00001.1	sp|F4HPR5|DRP5A_ARATH	*-*-	Dynamin-related protein 5A		
Niben101Scf02634g04009.1			Unknown protein		
Niben101Scf01740g02002.1	gb|KFB84164.1|	*-*-	alpha/beta hydrolase [Calothrix sp. 336/3]	IPR006050 (DNA photolyase, N-terminal), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02929g02027.1	ref|XP_002535856.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00291g02022.1	sp|Q96000|COX1_PECMA	--*-	Cytochrome c oxidase subunit 1		
Niben101Scf01485g02010.1	ref|XP_007039626.1|	*-*-	Pleckstrin (PH) domain-containing protein isoform 3 [Theobroma cacao] gb|EOY24127.1| Pleckstrin (PH) domain-containing protein isoform 3 [Theobroma cacao]	IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf04503g03015.1	gb|KEH21804.1|	***-	late embryogenesis abundant protein (LEA) family protein [Medicago truncatula]		
Niben101Scf03778g01038.1	AT1G55180.1	***-	phospholipase D alpha 4 LENGTH=762	IPR000008 (C2 domain), IPR015679 (Phospholipase D family)	GO:0003824 (catalytic activity), GO:0005515 (protein binding), GO:0008152 (metabolic process)
Niben101Scf02969g00009.1	sp|Q9LQ16|PPR94_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf01922g11013.1	AT3G23920.1	****	beta-amylase 1 LENGTH=575	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf11443g01019.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg11483g00004.1			Unknown protein		
Niben101Scf00862g02053.1	ref|XP_003617133.1|	*-**	ABSCISIC ACID-INSENSITIVE 5-like protein [Medicago truncatula] gb|AET00092.1| bZIP transcription factor [Medicago truncatula]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04779g01006.1	sp|Q2IJ93|EFG1_ANADE	***-	Elongation factor G 1	IPR000795 (Elongation factor, GTP-binding domain), IPR005225 (Small GTP-binding protein domain), IPR009000 (Translation protein, beta-barrel domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf01137g00003.1	AT5G47940.1	*-*-	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). LENGTH=749		
Niben101Scf15286g00034.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03393g00007.1	ref|NP_187269.1|	****	rib [Arabidopsis thaliana]	IPR008195 (Ribosomal protein L34Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03975g01004.1	emb|CDY10237.1|	*-*-	BnaC05g04800D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf12858g01010.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf04304g01001.1	AT4G15390.1	****	HXXXD-type acyl-transferase family protein LENGTH=446	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf07383g12006.1	ref|WP_012307378.1|	***-	NAD dependent epimerase/dehydratase family protein [Synechococcus sp. PCC 7002] ref|YP_001735011.1| NAD dependent epimerase/dehydratase family protein [Synechococcus sp. PCC 7002] gb|ACA99755.1| NAD dependent epimerase/dehydratase family protein [Synechococcus sp. PCC 7002]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf08374g08006.1	sp|O14647|CHD2_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 2	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf03930g05036.1	sp|Q9LT81|C3H39_ARATH	***-	Zinc finger CCCH domain-containing protein 39	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf01436g03007.1	sp|Q9FUY2|LEUNG_ARATH	--*-	Transcriptional corepressor LEUNIG		
Niben101Scf02399g01004.1			Unknown protein		
Niben101Scf01433g08030.1	sp|Q91WU4|TMCO4_MOUSE	*-*-	Transmembrane and coiled-coil domain-containing protein 4	IPR007941 (Protein of unknown function DUF726)	
Niben101Scf03449g02006.1	sp|Q9H9Y4|GPN2_HUMAN	***-	GPN-loop GTPase 2	IPR004130 (GPN-loop GTPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02078g04009.1	sp|Q8D3K2|BETA_VIBVU	****	Oxygen-dependent choline dehydrogenase	IPR012132 (Glucose-methanol-choline oxidoreductase)	GO:0006066 (alcohol metabolic process), GO:0008812 (choline dehydrogenase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04249g01010.1	AT3G13460.1	***-	evolutionarily conserved C-terminal region 2 LENGTH=667	IPR007275 (YTH domain)	
Niben101Scf02425g04005.1	AT1G17580.1	****	myosin 1 LENGTH=1520	IPR000048 (IQ motif, EF-hand binding site), IPR002710 (Dilute), IPR004009 (Myosin, N-terminal, SH3-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf02790g05002.1	sp|Q6ZSG1|RN165_HUMAN	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01518g08001.1	emb|CDY21094.1|	***-	BnaA08g24310D [Brassica napus]		
Niben101Scf00067g02005.1	AT2G04220.1	***-	Plant protein of unknown function (DUF868) LENGTH=307	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf02387g03017.1	sp|P48368|CRTE_CYAPA	***-	Geranylgeranyl diphosphate synthase	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf02541g02001.1	AT4G21750.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=762	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf15166g01003.1	sp|Q9H330|TM245_HUMAN	*-*-	Transmembrane protein 245	IPR002549 (Uncharacterised protein family UPF0118)	
Niben101Scf11774g00002.1	emb|CDY17280.1|	***-	BnaA10g09140D [Brassica napus]		
Niben101Scf03523g01018.1	gb|ABA96825.1|	*-*-	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]		
Niben101Scf10780g00002.1	sp|Q9XF43|KCS6_ARATH	***-	3-ketoacyl-CoA synthase 6	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf06436g05026.1	sp|P38389|SC61B_ARATH	*-*-	Protein transport protein Sec61 subunit beta	IPR016482 (Protein transport protein SecG/Sec61-beta/Sbh1)	
Niben101Scf03913g01045.1	sp|Q9SVE5|EXLA2_ARATH	***-	Expansin-like A2	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0019953 (sexual reproduction)
Niben101Scf06486g04003.1	AT4G21380.1	*-**	receptor kinase 3 LENGTH=850	IPR011009 (Protein kinase-like domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08142g00016.1	sp|Q1PFD9|TBL31_ARATH	***-	Protein trichome birefringence-like 31	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf06668g07006.1	ref|XP_002528981.1|	*-**	metal ion binding protein, putative [Ricinus communis] gb|EEF33400.1| metal ion binding protein, putative [Ricinus communis]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf20521g00003.1	ref|NP_001061336.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf08080g02005.1	emb|CDX75979.1|	*-*-	BnaC03g40620D [Brassica napus]	IPR008889 (VQ)	
Niben101Scf00854g11111.1	sp|P31916|MAT2_EUGGR	--*-	Maturase-like protein 2	IPR000477 (Reverse transcriptase domain), IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf04343g00001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01585g01002.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04535g02020.1	sp|Q6GM16|NXN_XENLA	*-*-	Nucleoredoxin	IPR012336 (Thioredoxin-like fold)	
Niben101Scf04328g00021.1	AT5G50330.1	***-	Protein kinase superfamily protein LENGTH=479	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf31501g00001.1	sp|Q0VS07|MURE_ALCBS	****	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase	IPR000713 (Mur ligase, N-terminal), IPR004101 (Mur ligase, C-terminal), IPR013221 (Mur ligase, central)	GO:0005524 (ATP binding), GO:0009058 (biosynthetic process), GO:0016874 (ligase activity)
Niben101Scf00631g01016.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf06435g00005.1	sp|P0DI65|CSPLL_MAIZE	***-	CASP-like protein 16	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf07677g00011.1	sp|Q9D7H2|WDR5B_MOUSE	--*-	WD repeat-containing protein 5B	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf06157g00009.1	sp|Q9V6X7|OFUT1_DROME	--*-	GDP-fucose protein O-fucosyltransferase 1		
Niben101Scf01851g03007.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00630g01006.1	AT5G64740.1	*-*-	cellulose synthase 6 LENGTH=1084	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf07305g00002.1	AT1G15760.1	***-	Sterile alpha motif (SAM) domain-containing protein LENGTH=202	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf05554g00016.1	sp|Q43772|UGPA_HORVU	--*-	UTP--glucose-1-phosphate uridylyltransferase		
Niben101Scf12197g03004.1	sp|P93194|RPK1_IPONI	****	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04411g03009.1	sp|B0KKR8|SYT_PSEPG	--*-	Threonine--tRNA ligase		
Niben101Scf00777g04014.1	sp|Q641M3|TMM18_DANRE	***-	Transmembrane protein 18	IPR026721 (Transmembrane protein 18)	
Niben101Scf02509g11004.1	sp|Q9ZRT1|GR1_ARATH	*-*-	Protein gamma response 1		
Niben101Scf02320g00013.1	sp|F1LNJ2|U520_RAT	--*-	U5 small nuclear ribonucleoprotein 200 kDa helicase	IPR004179 (Sec63 domain)	
Niben101Scf01909g01004.1	gb|AIF73578.1|	***-	progesterone 5-beta-reductase [Digitalis lanata]		
Niben101Scf17597g01013.1	AT4G01070.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03076g00015.1	gb|KEH37408.1|	*-*-	ankyrin repeat plant-like protein [Medicago truncatula]	IPR020683 (Ankyrin repeat-containing domain)	
Niben101Scf03929g04007.1	AT4G39400.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1196	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf01991g05015.1	sp|P26573|RBS8_NICPL	***-	Ribulose bisphosphate carboxylase small chain 8B, chloroplastic	IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain)	
Niben101Scf09719g00007.1	ref|XP_002524800.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF37643.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf05053g00006.1	sp|B9FXV5|IF4G_ORYSJ	*-*-	Eukaryotic translation initiation factor 4G	IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00711g01001.1			Unknown protein		
Niben101Scf04436g07001.1	sp|Q8SQK0|PRS8_ENCCU	***-	26S protease regulatory subunit 8 homolog	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf03545g00014.1	AT5G61910.1	*-*-	DCD (Development and Cell Death) domain protein LENGTH=738	IPR013989 (Development/cell death domain)	
Niben101Scf01628g00040.1	sp|P06029|COX2_CYBSA	*-*-	Cytochrome c oxidase subunit 2	IPR011759 (Cytochrome C oxidase subunit II, transmembrane domain)	GO:0016021 (integral component of membrane), GO:0022900 (electron transport chain)
Niben101Scf04054g01005.1	sp|Q6YXH5|ZHD1_ORYSJ	***-	Zinc-finger homeodomain protein 1	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf00402g02002.1	AT4G01070.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf07678g00009.1	ref|XP_002520376.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF41992.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf10431g00006.1	sp|Q93VM9|THOC1_ARATH	***-	THO complex subunit 1	IPR021861 (THO complex, subunit THOC1)	
Niben101Scf01022g02010.1	sp|Q9NX55|HYPK_HUMAN	-**-	Huntingtin-interacting protein K		
Niben101Scf04173g03008.1	emb|CBM56257.1|	*-**	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02738g04004.1	ref|XP_002511763.1|	*-**	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF50432.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf02716g00001.1	dbj|BAD81603.1|	*-*-	helicase-like protein [Oryza sativa Japonica Group]		
Niben101Scf12695g00005.1	ref|XP_003074807.1|	*-**	Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) (ISS) [Ostreococcus tauri] emb|CAL52065.1| Nucleotide-binding, alpha-beta plait [Ostreococcus tauri]	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf17430g00002.1	AT4G10270.1	***-	Wound-responsive family protein LENGTH=90	IPR022251 (Protein of unknown function wound-induced)	
Niben101Scf09792g02019.1	emb|CDY00153.1|	***-	BnaC09g01480D [Brassica napus]		
Niben101Scf09556g02013.1	sp|P08054|HBP1_CASGL	***-	Hemoglobin-1	IPR000971 (Globin), IPR009050 (Globin-like)	GO:0005506 (iron ion binding), GO:0015671 (oxygen transport), GO:0019825 (oxygen binding), GO:0020037 (heme binding)
Niben101Scf00173g07012.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03949g00021.1	emb|CAE01801.2|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf00777g06008.1	emb|CDX76744.1|	***-	BnaC08g33300D [Brassica napus]		
Niben101Scf00133g02013.1	gb|ABF97068.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf01374g03030.1	emb|CAE05840.2|	--*-	OSJNBa0091C07.2 [Oryza sativa Japonica Group]		
Niben101Scf26781g00016.1	sp|P0CQ71|IF4A_CRYNB	****	ATP-dependent RNA helicase eIF4A	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf07404g04007.1	sp|Q60632|COT1_MOUSE	--*-	COUP transcription factor 1		
Niben101Scf03191g05007.1	gb|ADX66725.1|	***-	xyloglucan-specific endoglucanase inhibitor protein 2 [Solanum tuberosum]	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf11657g00010.1	AT2G34740.1	***-	Protein phosphatase 2C family protein LENGTH=339	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf04368g00015.1			Unknown protein		
Niben101Scf02319g07003.1	AT5G19650.1	*-*-	ovate family protein 8 LENGTH=221	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf01008g02010.1	ref|XP_002509440.1|	*-*-	pentatricopeptide repeat-containing protein, putative [Ricinus communis] gb|EEF50827.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]		
Niben101Scf02384g00002.1	AT2G20585.1	***-	nuclear fusion defective 6 LENGTH=100		
Niben101Scf01182g06005.1	sp|P0DI42|CASP2_WHEAT	-**-	Casparian strip membrane protein 2	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf10767g03013.1	sp|Q5VW32|BROX_HUMAN	*-*-	BRO1 domain-containing protein BROX	IPR004328 (BRO1 domain)	
Niben101Scf02714g00005.1	sp|Q38890|GUN25_ARATH	***-	Endoglucanase 25	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00446g09004.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf00879g10002.1			Unknown protein		
Niben101Scf06653g01004.1	sp|O04532|FH8_ARATH	*-*-	Formin-like protein 8	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR015425 (Formin, FH2 domain)	
Niben101Scf01180g02001.1	AT4G22810.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=324	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf00358g00017.1	sp|Q6DI40|TTC33_DANRE	*-*-	Tetratricopeptide repeat protein 33	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf09696g01109.1			Unknown protein		
Niben101Scf15244g00004.1	sp|Q4KKX4|NCOR1_XENTR	*-*-	Nuclear receptor corepressor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01903g01001.1	sp|Q9SRM0|ATL66_ARATH	-**-	RING-H2 finger protein ATL66		
Niben101Scf02929g06016.1			Unknown protein		
Niben101Ctg12179g00003.1	sp|Q9M3V8|RS6_ASPOF	***-	40S ribosomal protein S6	IPR001377 (Ribosomal protein S6e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03868g01015.1	AT1G13380.1	***-	Protein of unknown function (DUF1218) LENGTH=188	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf01154g00010.1	sp|A3QH22|KDSA_SHELP	***-	2-dehydro-3-deoxyphosphooctonate aldolase	IPR006269 (3-deoxy-8-phosphooctulonate synthase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0008152 (metabolic process), GO:0008676 (3-deoxy-8-phosphooctulonate synthase activity), GO:0009058 (biosynthetic process)
Niben101Scf10475g00002.1	sp|Q732M1|RNC_BACC1	*-**	Ribonuclease 3	IPR000999 (Ribonuclease III domain), IPR014720 (Double-stranded RNA-binding domain)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0006396 (RNA processing)
Niben101Scf01681g10001.1	sp|Q4QRJ7|EIF2A_DANRE	***-	Eukaryotic translation initiation factor 2A	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf08683g00003.1	sp|Q5M7C8|HORM1_XENLA	*-*-	HORMA domain-containing protein 1	IPR003511 (DNA-binding HORMA), IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf05676g05001.1	sp|Q9FVI1|ADF2_PETHY	****	Actin-depolymerizing factor 2	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf03930g01018.1	sp|P93400|PLDA1_TOBAC	****	Phospholipase D alpha 1	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0004630 (phospholipase D activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0046470 (phosphatidylcholine metabolic process)
Niben101Scf08054g00005.1	sp|Q6DRJ4|KRI1_DANRE	*-*-	Protein KRI1 homolog	IPR018034 (KRR1 interacting protein 1), IPR024626 (Kri1-like, C-terminal)	
Niben101Scf06444g02001.1	sp|O80341|EF102_ARATH	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03830g03005.1			Unknown protein		
Niben101Scf00419g00005.1			Unknown protein		
Niben101Scf04337g01015.1	AT5G19670.1	***-	Exostosin family protein LENGTH=610	IPR004263 (Exostosin-like)	
Niben101Scf02298g06013.1	AT1G11260.1	****	sugar transporter 1 LENGTH=522	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf07278g00010.1	AT4G34020.1	***-	Class I glutamine amidotransferase-like superfamily protein LENGTH=472	IPR006287 (DJ-1), IPR029062 (Class I glutamine amidotransferase-like)	
Niben101Scf00144g00011.1	gb|EWM14902.1|	***-	short-chain dehydrogenase [Kutzneria sp. 744]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf04400g02017.1	AT2G03450.1	*-*-	purple acid phosphatase 9 LENGTH=651	IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	
Niben101Scf01789g03010.1	sp|P0DI19|PHF5A_ARATH	***-	PHD finger-like domain-containing protein 5A	IPR005345 (PHF5-like)	
Niben101Scf03574g00026.1	sp|Q8S944|DRP3A_ARATH	***-	Dynamin-related protein 3A	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf02023g01002.1	sp|Q9LW96|INO1_TOBAC	****	Inositol-3-phosphate synthase	IPR002587 (Myo-inositol-1-phosphate synthase)	GO:0004512 (inositol-3-phosphate synthase activity), GO:0006021 (inositol biosynthetic process), GO:0008654 (phospholipid biosynthetic process)
Niben101Scf01009g01009.1	emb|CDX93386.1|	*-*-	BnaC04g45100D [Brassica napus]		
Niben101Scf06966g01011.1	AT5G64740.1	****	cellulose synthase 6 LENGTH=1084	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf04487g04010.1	sp|Q94CK4|ANXD8_ARATH	***-	Annexin D8	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf19757g00002.1	sp|O64823|MCU2_ARATH	***-	Calcium uniporter protein 2, mitochondrial	IPR006769 (Coiled-coil domain containing protein 109, C-terminal)	
Niben101Scf00056g03004.1	gb|ABA94758.1|	--*-	hAT family dimerisation domain containing protein [Oryza sativa Japonica Group]	IPR003656 (Zinc finger, BED-type)	GO:0003677 (DNA binding)
Niben101Scf00127g00008.1	emb|CDX89594.1|	***-	BnaC04g36130D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf14625g01011.1	sp|P35687|RS21_ORYSJ	***-	40S ribosomal protein S21	IPR001931 (Ribosomal protein S21e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf13429g03009.1			Unknown protein		
Niben101Scf00854g02039.1	gb|ACX55016.1|	*-*-	pG1 protein [Bacillus amyloliquefaciens]		
Niben101Scf01184g09001.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03677g00006.1			Unknown protein	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf04347g01030.1	AT4G23930.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=187	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf03277g02015.1	sp|Q8CUN1|ARGJ_OCEIH	****	Arginine biosynthesis bifunctional protein ArgJ	IPR002813 (Arginine biosynthesis protein ArgJ)	GO:0004358 (glutamate N-acetyltransferase activity), GO:0006526 (arginine biosynthetic process)
Niben101Scf04406g06011.1	AT5G23370.1	*-*-	GRAM domain-containing protein / ABA-responsive protein-related LENGTH=219	IPR004182 (GRAM domain)	
Niben101Scf06850g00012.1			Unknown protein	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf03709g03002.1	AT4G01070.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00947g00001.1	sp|Q39786|PGLR_GOSHI	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01795g04038.1	AT2G35270.1	*-*-	Predicted AT-hook DNA-binding family protein LENGTH=285	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf03540g00021.1	sp|Q6Z2W3|ARFE_ORYSJ	*-**	Auxin response factor 5	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf01269g13019.1			Unknown protein		
Niben101Scf00637g03003.1	sp|Q8L5A7|SOT15_ARATH	****	Cytosolic sulfotransferase 15	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf05005g02010.1	sp|Q8VHZ7|IMP4_MOUSE	***-	U3 small nucleolar ribonucleoprotein protein IMP4	IPR004154 (Anticodon-binding), IPR007109 (Brix domain)	
Niben101Scf03489g00012.1	sp|Q84L30|RD23D_ARATH	--*-	Ubiquitin receptor RAD23d	IPR029071 (Ubiquitin-related domain)	
Niben101Scf09751g00012.1	AT1G77210.1	****	sugar transporter 14 LENGTH=504	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04386g08002.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05764g03007.1	AT5G42990.1	***-	ubiquitin-conjugating enzyme 18 LENGTH=161	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf14516g00018.1	sp|Q59641|PPIA_PSEAE	--**	Peptidyl-prolyl cis-trans isomerase A	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf06423g02008.1	emb|CDY26542.1|	*-*-	BnaA09g47350D [Brassica napus]	IPR008545 (WEB family)	
Niben101Scf04418g12015.1	AT5G48340.1	***-	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). LENGTH=510		
Niben101Scf14636g01016.1	AT2G01070.1	***-	Lung seven transmembrane receptor family protein LENGTH=496	IPR009637 (Transmembrane receptor, eukaryota)	GO:0016021 (integral component of membrane)
Niben101Scf04748g00003.1	sp|Q6GQN4|FA32A_DANRE	***-	Protein FAM32A-like	IPR013865 (Protein of unknown function DUF1754, eukaryotic)	
Niben101Scf04886g01008.1	ref|XP_002527723.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF34636.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04481g00029.1	sp|Q94KB2|MLO13_ARATH	*-*-	MLO-like protein 13	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf03188g06001.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07191g02017.1	sp|Q7XJ98|KATAM_ARATH	***-	Xyloglucan galactosyltransferase KATAMARI1	IPR004263 (Exostosin-like)	
Niben101Scf00024g04007.1	sp|Q4IB50|SET2_GIBZE	--*-	Histone-lysine N-methyltransferase, H3 lysine-36 specific		
Niben101Scf21257g00020.1	AT1G47740.1	***-	PPPDE putative thiol peptidase family protein LENGTH=279	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf08280g00001.1	sp|A0QSP8|RL13_MYCS2	***-	50S ribosomal protein L13	IPR005822 (Ribosomal protein L13), IPR023564 (Ribosomal protein L13 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04044g15005.1			Unknown protein		
Niben101Scf04138g00004.1	AT3G54190.1	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=467	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf06222g01009.1	sp|Q8L7L1|SPHK1_ARATH	****	Sphingosine kinase 1	IPR001206 (Diacylglycerol kinase, catalytic domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf12360g00011.1	gb|KEH27963.1|	***-	Zn-dependent hydrolase of the beta-lactamase fold protein [Medicago truncatula]	IPR001279 (Beta-lactamase-like)	
Niben101Scf04514g01005.1	sp|Q42485|ZFP1_ARATH	*-*-	Zinc finger protein 1	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf07944g00004.1	ref|NP_001041883.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf18395g00007.1	sp|P58070|ERA_ECO57	--*-	GTPase Era	IPR009019 (K homology domain, prokaryotic type), IPR015946 (K homology domain-like, alpha/beta)	GO:0003723 (RNA binding)
Niben101Scf02801g00005.1	sp|Q3ZCG8|EMC6_BOVIN	****	ER membrane protein complex subunit 6	IPR029008 (Rab5-interacting protein family)	GO:0005783 (endoplasmic reticulum), GO:0016021 (integral component of membrane), GO:0072546 (ER membrane protein complex)
Niben101Scf06754g01019.1	sp|Q2RAC5|CCT13_ORYSJ	*-**	Cyclin-T1-3	IPR015429 (Cyclin C/H/T/L)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0019901 (protein kinase binding)
Niben101Scf02153g00001.1	sp|Q9FHS6|FK119_ARATH	***-	F-box/kelch-repeat protein	IPR001810 (F-box domain), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf10058g00001.1	ref|WP_027694205.1|	--*-	response regulator [Vibrio gazogenes]		
Niben101Scf00640g04021.1	sp|Q9M0I2|EXPB3_ARATH	***-	Expansin-B3	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0019953 (sexual reproduction)
Niben101Scf12308g00011.1	emb|CCG48010.1|	--*-	sarcoplasmic reticulum histidine-rich calcium-binding protein precursor, putative, expressed [Triticum aestivum]		
Niben101Scf00339g07010.1	gb|ABF95292.1|	*-*-	transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa Japonica Group]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf02509g10002.1	sp|P42696|RBM34_HUMAN	--**	RNA-binding protein 34	IPR002483 (PWI domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0006397 (mRNA processing)
Niben101Scf07466g02007.1			Unknown protein		
Niben101Scf03953g06021.1	sp|B7LLQ1|APT_ESCF3	***-	Adenine phosphoribosyltransferase	IPR029057 (Phosphoribosyltransferase-like)	
Niben101Scf01894g03012.1			Unknown protein		
Niben101Scf33253g00003.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf10834g00004.1	sp|A0LVP4|RF2_ACIC1	****	Peptide chain release factor 2	IPR000352 (Peptide chain release factor class I/class II), IPR005139 (Peptide chain release factor), IPR014720 (Double-stranded RNA-binding domain)	GO:0003747 (translation release factor activity), GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf02631g04009.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00863g01017.1	AT4G18640.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=678	IPR012458 (Protein of unknown function DUF1664), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Ctg12991g00003.1	sp|Q6IME9|K2C72_MOUSE	--*-	Keratin, type II cytoskeletal 72	IPR028346 (HAUS augmin-like complex subunit 2)	GO:0031023 (microtubule organizing center organization), GO:0051225 (spindle assembly)
Niben101Scf00603g08012.1	sp|Q38854|DXS_ARATH	--*-	1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf10834g03005.1	sp|O04153|CALR3_ARATH	***-	Calreticulin-3	IPR001580 (Calreticulin/calnexin), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005783 (endoplasmic reticulum), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf02423g02018.1	emb|CDX98312.1|	***-	BnaC06g16730D [Brassica napus]		
Niben101Scf06180g00002.1	AT5G41560.1	***-	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages;	IPR018276 (Ubiquitin ligase, Det1/DDB1-complexing)	
Niben101Scf07137g00002.1	sp|Q22888|IF4E4_CAEEL	****	Eukaryotic translation initiation factor 4E-4	IPR001040 (Translation Initiation factor eIF- 4e), IPR023398 (Translation Initiation factor eIF- 4e-like  domain)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0006413 (translational initiation)
Niben101Scf02716g00005.1			Unknown protein		
Niben101Scf06709g01008.1	dbj|BAD90706.1|	*-*-	plastid DNA-binding protein [Brassica napus]		
Niben101Scf20506g01020.1			Unknown protein		
Niben101Scf00854g04027.1	sp|P08742|COX1_MAIZE	****	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07121g01004.1	AT1G11925.1	***-	Stigma-specific Stig1 family protein LENGTH=140	IPR006969 (Stigma-specific protein Stig1)	
Niben101Scf02370g00006.1	sp|Q9FEL7|LAX2_MEDTR	***-	Auxin transporter-like protein 2	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf01964g09004.1	AT1G09310.1	***-	Protein of unknown function, DUF538 LENGTH=179	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf17891g02004.1	sp|Q9FLV9|SLAH3_ARATH	****	S-type anion channel SLAH3	IPR004695 (Voltage-dependent anion channel)	GO:0006873 (cellular ion homeostasis), GO:0008308 (voltage-gated anion channel activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf06123g00002.1			Unknown protein		
Niben101Scf04384g04005.1	sp|Q5N749|MOR1_ORYSJ	*-*-	Protein MOR1		
Niben101Scf01368g00008.1			Unknown protein		
Niben101Scf07327g01026.1	AT4G00340.1	****	receptor-like protein kinase 4 LENGTH=818	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf10073g00013.1	sp|Q9ZUG9|BH066_ARATH	*-*-	Transcription factor bHLH66	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf11125g00002.1	AT3G23160.1	***-	Protein of unknown function (DUF668) LENGTH=531	IPR007700 (Protein of unknown function DUF668), IPR021864 (Protein of unknown function DUF3475)	
Niben101Scf14144g01011.1	sp|Q8BP31|RN122_MOUSE	*-*-	RING finger protein 122	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07509g01001.1	AT5G03720.1	*-**	heat shock transcription factor A3 LENGTH=412	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03949g05013.1	tpg|DAA47098.1|	*-*-	TPA: hypothetical protein ZEAMMB73_291124 [Zea mays]		
Niben101Scf07616g00002.1	AT1G10940.2	****	Protein kinase superfamily protein LENGTH=371	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf14592g00003.1	ref|XP_002535202.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF27181.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01392g01001.1	sp|Q9LM76|PUB44_ARATH	***-	U-box domain-containing protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf02284g01001.1	sp|Q86V35|CABP7_HUMAN	*-**	Calcium-binding protein 7	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00700g01006.1	emb|CDY68259.1|	*-*-	BnaCnng58260D [Brassica napus]		
Niben101Scf06909g04004.1	sp|Q9LZQ1|TBL6_ARATH	*-*-	Protein trichome birefringence-like 6	IPR026057 (PC-Esterase)	
Niben101Scf04134g00001.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08977g00006.1	emb|CDY56816.1|	***-	BnaCnng31190D [Brassica napus]	IPR024489 (Organ specific protein)	
Niben101Scf03755g00003.1	AT5G25840.1	***-	Protein of unknown function (DUF1677) LENGTH=173	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf02807g01001.1	AT3G21790.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=495	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf07078g00002.1	sp|Q69Q47|CIPKO_ORYSJ	****	CBL-interacting protein kinase 24	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11782g01001.1	sp|Q5DTZ6|RN150_MOUSE	--*-	RING finger protein 150	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00388g06007.1	AT3G49725.1	****	GTP-binding protein, HflX LENGTH=620	IPR016496 (GTPase HflX), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf02569g02024.1	sp|O64628|TXND9_ARATH	***-	Thioredoxin domain-containing protein 9 homolog	IPR012336 (Thioredoxin-like fold)	
Niben101Scf00321g05002.1	sp|B1WRN9|CCS1_CYAA5	***-	Cytochrome c biogenesis protein CcsB	IPR007816 (ResB-like domain), IPR023494 (Cytochrome c biogenesis protein Ccs1/CcsB)	
Niben101Scf01269g17007.1	AT3G20480.1	****	tetraacyldisaccharide 4'-kinase family protein LENGTH=395	IPR003758 (Tetraacyldisaccharide 4'-kinase)	GO:0005524 (ATP binding), GO:0009029 (tetraacyldisaccharide 4'-kinase activity), GO:0009245 (lipid A biosynthetic process)
Niben101Scf05860g00001.1	sp|P38929|ATC2_YEAST	*-*-	Calcium-transporting ATPase 2	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf02476g04009.1	sp|P51419|RL273_ARATH	***-	60S ribosomal protein L27-3	IPR001141 (Ribosomal protein L27e), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02074g02056.1			Unknown protein		
Niben101Scf05405g00002.1	AT3G12620.1	****	Protein phosphatase 2C family protein LENGTH=385	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf03170g01008.1			Unknown protein		
Niben101Scf03872g02002.1	AT1G72010.1	*-*-	TCP family transcription factor LENGTH=375	IPR005333 (Transcription factor, TCP)	
Niben101Scf00328g00002.1	sp|O23337|PP311_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00721g00008.1	sp|Q6NQB7|B3GT7_ARATH	*-**	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf09127g00004.1			Unknown protein		
Niben101Scf00363g00011.1	sp|Q9SHZ8|PP168_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf10881g00016.1			Unknown protein		
Niben101Scf09372g04009.1	sp|Q695T9|RHBL2_TOXGO	***-	Rhomboid-like protease 2	IPR002610 (Peptidase S54, rhomboid), IPR008390 (AWPM-19-like)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf00187g02025.1	gb|KEH16419.1|	****	HXXXD-type acyl-transferase family protein [Medicago truncatula]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf08137g05001.1	AT4G21750.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=762	IPR002913 (START domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008289 (lipid binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00293g12001.1	sp|F4IWA8|TBL41_ARATH	***-	Protein trichome birefringence-like 41	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf02023g02002.1			Unknown protein		
Niben101Scf13799g00004.1	AT5G11090.1	*-*-	serine-rich protein-related LENGTH=217		
Niben101Scf02080g03011.1			Unknown protein		
Niben101Scf09708g00006.1	ref|XP_007010390.1|	--*-	Retrotransp [Theobroma cacao]		
Niben101Scf05711g00021.1	sp|Q08891|FACR2_ARATH	****	Fatty acyl-CoA reductase 2	IPR016040 (NAD(P)-binding domain), IPR026055 (Fatty acyl-CoA reductase)	GO:0080019 (fatty-acyl-CoA reductase (alcohol-forming) activity)
Niben101Scf00557g03009.1			Unknown protein		
Niben101Ctg15134g00002.1			Unknown protein		
Niben101Scf00046g09010.1	sp|P81394|MYB15_ANTMA	***-	Myb-related protein 315	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07579g02011.1	sp|A8XYZ2|SDHF2_CAEBR	--*-	Succinate dehydrogenase assembly factor 2, mitochondrial	IPR005631 (Flavinator of succinate dehydrogenase)	
Niben101Scf09101g01004.1	gb|ABA91087.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf01683g01001.1	AT3G05420.2	*-**	acyl-CoA binding protein 4 LENGTH=669	IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf08580g00001.1	AT3G25580.1	***-	Thioredoxin superfamily protein LENGTH=210	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf04669g02014.1	sp|Q9LHL6|TBL1_ARATH	***-	Protein trichome birefringence-like 1	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf03565g00008.1	sp|Q5KVX9|MENE_GEOKA	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf02509g04005.1	AT3G08580.1	***-	ADP/ATP carrier 1 LENGTH=381	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf04430g03012.1	ref|XP_002521818.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF40628.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00109g02013.1	AT2G33490.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=623	IPR027267 (Arfaptin homology (AH) domain/BAR domain)	GO:0005515 (protein binding), GO:0005737 (cytoplasm)
Niben101Scf06879g01005.1	sp|Q94CD5|ATG7_ARATH	***-	Ubiquitin-like modifier-activating enzyme atg7	IPR006285 (Ubiquitin-like modifier-activating enzyme Atg7), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0006914 (autophagy)
Niben101Scf03289g04001.1	AT2G27950.1	*-*-	Ring/U-Box superfamily protein LENGTH=839	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07026g00018.1	sp|A0JMV4|RBM5A_XENLA	*-**	RNA-binding protein 5-A	IPR000467 (G-patch domain)	GO:0003676 (nucleic acid binding)
Niben101Scf04099g10005.1	AT2G46690.1	***-	SAUR-like auxin-responsive protein family LENGTH=121	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00845g00004.1	AT1G30640.1	*-**	Protein kinase family protein LENGTH=562	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00152g13013.1	AT1G75620.1	***-	glyoxal oxidase-related protein LENGTH=547	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR014756 (Immunoglobulin E-set), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf16199g00004.1	AT1G05150.1	****	Calcium-binding tetratricopeptide family protein LENGTH=808	IPR011990 (Tetratricopeptide-like helical domain), IPR011992 (EF-hand domain pair)	GO:0005515 (protein binding)
Niben101Scf16378g01014.1	sp|P69659|RR18_ATRBE	*-*-	30S ribosomal protein S18, chloroplastic		
Niben101Scf01085g06006.1	AT5G58320.2	***-	Kinase interacting (KIP1-like) family protein LENGTH=558	IPR011684 (KIP1-like)	
Niben101Scf08134g01015.1	AT2G15240.1	***-	UNC-50 family protein LENGTH=252	IPR007881 (UNC-50)	
Niben101Scf07253g01002.1	gb|AES67098.2|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00698g00009.1	sp|P16019|HSP70_THEAN	***-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf05299g00009.1	ref|XP_002531309.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF31081.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08447g09010.1	AT5G48545.1	***-	histidine triad nucleotide-binding 3 LENGTH=197	IPR001310 (Histidine triad (HIT) protein), IPR011146 (HIT-like domain)	GO:0003824 (catalytic activity)
Niben101Scf17442g00001.1	sp|Q2RZJ2|SYP_SALRD	****	Proline--tRNA ligase	IPR002316 (Proline-tRNA ligase, class IIa), IPR017449 (Prolyl-tRNA synthetase, class II)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004827 (proline-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006433 (prolyl-tRNA aminoacylation)
Niben101Scf00206g00034.1	sp|Q9CQK7|RWDD1_MOUSE	***-	RWD domain-containing protein 1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	GO:0005515 (protein binding)
Niben101Scf19043g00021.1	sp|Q8H038|KATAM_ORYSJ	***-	Xyloglucan galactosyltransferase KATAMARI1 homolog	IPR004263 (Exostosin-like)	
Niben101Scf01599g02007.1	AT1G21150.1	****	Mitochondrial transcription termination factor family protein LENGTH=390	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03913g01023.1	AT3G15750.1	*-*-	Essential protein Yae1, N-terminal LENGTH=199	IPR019191 (Essential protein Yae1, N-terminal)	
Niben101Scf01740g08005.1	sp|O80932|EXPA3_ARATH	***-	Expansin-A3	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf13099g00015.1	sp|O48844|PSD1A_ARATH	****	26S proteasome non-ATPase regulatory subunit 1 homolog A	IPR016024 (Armadillo-type fold), IPR016642 (26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit)	GO:0000502 (proteasome complex), GO:0005488 (binding), GO:0030234 (enzyme regulator activity), GO:0042176 (regulation of protein catabolic process)
Niben101Scf00259g00001.1	tpg|DAA59737.1|	*-*-	TPA: hypothetical protein ZEAMMB73_091688 [Zea mays]	IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane)
Niben101Ctg14848g00004.1	AT1G16890.3	***-	ubiquitin-conjugating enzyme 36 LENGTH=162	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf09774g04001.1	gb|AAY43791.1|	--*-	E6-2 [Gossypium hirsutum]		
Niben101Scf05158g01021.1	sp|O93826|PPIB_ARTBE	****	Peptidyl-prolyl cis-trans isomerase B	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf03426g00005.1	ref|XP_007013761.1|	***-	TIFY domain protein 8 isoform 3 [Theobroma cacao] gb|EOY31380.1| TIFY domain protein 8 isoform 3 [Theobroma cacao]	IPR010399 (Tify)	
Niben101Scf00803g01007.1	AT5G67290.1	****	FAD-dependent oxidoreductase family protein LENGTH=406	IPR006076 (FAD dependent oxidoreductase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Ctg08286g00001.1	tpg|DAA37397.1|	--*-	TPA: hypothetical protein ZEAMMB73_234053 [Zea mays]		
Niben101Scf02218g01007.1	sp|O49292|PPD4_ARATH	***-	PsbP domain-containing protein 4, chloroplastic	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf01063g11007.1	AT5G24650.1	*-*-	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein LENGTH=259		
Niben101Scf05437g04014.1	sp|Q9FGS5|NRT31_ARATH	****	High-affinity nitrate transporter 3.1	IPR016605 (High-affinity nitrate transporter)	GO:0010167 (response to nitrate), GO:0015706 (nitrate transport)
Niben101Scf02264g05017.1	sp|Q9LMM0|GPAT4_ARATH	***-	Glycerol-3-phosphate 2-O-acyltransferase 4	IPR002123 (Phospholipid/glycerol acyltransferase), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf10217g02001.1	sp|O82067|TOM7A_SOLTU	****	Mitochondrial import receptor subunit TOM7-1	IPR012621 (Mitochondrial import receptor subunit TOM7)	GO:0005742 (mitochondrial outer membrane translocase complex), GO:0030150 (protein import into mitochondrial matrix)
Niben101Scf00472g03019.1	AT1G10940.2	****	Protein kinase superfamily protein LENGTH=371	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07008g01011.1	AT2G25737.1	***-	Sulfite exporter TauE/SafE family protein LENGTH=476	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf02399g05006.1	sp|P13910|PSBA_VICFA	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf12045g02004.1	AT5G05830.1	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=204	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf06442g00013.1	sp|P06634|DED1_YEAST	*-**	ATP-dependent RNA helicase DED1	IPR001202 (WW domain), IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf01409g12025.1	sp|P77964|SECY_SYNY3	***-	Protein translocase subunit SecY	IPR002208 (SecY/SEC61-alpha family), IPR023201 (SecY subunit domain)	GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf04216g01006.1	sp|B0V2N1|PTPRS_MOUSE	*-**	Receptor-type tyrosine-protein phosphatase S	IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf03006g04005.1	gb|AFS35577.1|	****	salicylic acid methyl transferase [Nicotiana benthamiana]	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02502g16008.1	AT3G52990.1	****	Pyruvate kinase family protein LENGTH=527	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf03673g03007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02913g00013.1	AT5G08570.1	****	Pyruvate kinase family protein LENGTH=510	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf04786g01004.1	sp|Q8DLP6|ATPX_THEEB	****	ATP synthase subunit b'	IPR002146 (ATPase, F0 complex, subunit B/B', bacterial/chloroplast)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf03374g00003.1	sp|Q2MIH4|CYF_SOLBU	*-*-	Apocytochrome f	IPR002325 (Cytochrome f), IPR024094 (Cytochrome f large domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0015979 (photosynthesis), GO:0020037 (heme binding), GO:0031361 (integral component of thylakoid membrane)
Niben101Scf03584g00006.1	gb|AGW30205.1|	*-**	alcohol acyl transferase [Malus domestica]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04742g01005.1	gb|AET04183.2|	***-	translation initiation factor eIF-2B gamma subunit [Medicago truncatula]	IPR001451 (Bacterial transferase hexapeptide repeat), IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf00990g01004.1			Unknown protein		
Niben101Scf01661g01012.1	sp|Q9FWA6|PP207_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf11505g00001.1	gb|AAX96097.1|	--*-	Transp [Oryza sativa Japonica Group]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf00408g02001.1	sp|Q8GYB8|OPR2_ARATH	****	12-oxophytodienoate reductase 2	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06205g00003.1	gb|KEH43818.1|	****	acetyltransferase (GNAT) domain protein [Medicago truncatula]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf03673g02009.1	sp|P93047|HMGB3_ARATH	***-	High mobility group B protein 3	IPR009071 (High mobility group box domain)	
Niben101Scf04943g00013.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07070g01015.1	AT3G28180.1	***-	Cellulose-synthase-like C4 LENGTH=673	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf34305g00006.1			Unknown protein		
Niben101Scf13259g00023.1	sp|Q9M1E2|PTR37_ARATH	***-	Protein NRT1/ PTR FAMILY 2.7	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf00821g12011.1	sp|A4SQ09|LPLA_AERS4	--*-	Lipoate-protein ligase A	IPR004143 (Biotin/lipoate A/B protein ligase)	GO:0006464 (cellular protein modification process)
Niben101Scf22144g00007.1			Unknown protein		
Niben101Scf14566g01004.1			Unknown protein		
Niben101Scf07532g01001.1	sp|Q9UHD1|CHRD1_HUMAN	***-	Cysteine and histidine-rich domain-containing protein 1	IPR007051 (Cysteine/histidine-rich domain)	
Niben101Scf01508g01002.1	sp|O42993|FKBP_SCHPO	-**-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf02508g07017.1	sp|Q9ST98|PROF3_TOBAC	***-	Profilin-3	IPR005455 (Profilin), IPR027310 (Profilin conserved site)	GO:0003779 (actin binding)
Niben101Scf03403g02005.1	sp|O13493|MYB1_NEUCR	--**	Myb-like DNA-binding protein myb-1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01863g01013.1	ref|XP_002525295.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37123.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02459g00022.1	AT1G78895.1	***-	Reticulon family protein LENGTH=164	IPR003388 (Reticulon)	
Niben101Scf00920g09015.1	AT5G48800.1	***-	Phototropic-responsive NPH3 family protein LENGTH=614	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf03614g01001.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf02494g01010.1	AT4G25250.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=199	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf07187g01003.1	sp|Q94KK7|SYP52_ARATH	***-	Syntaxin-52	IPR000727 (Target SNARE coiled-coil domain)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane)
Niben101Scf03376g03014.1	ref|NP_973524.1|	--**	zinc ion binding / nucleic acid binding protein [Arabidopsis thaliana] gb|AEC07520.1| zinc ion binding / nucleic acid binding protein [Arabidopsis thaliana]	IPR003604 (Zinc finger, U1-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02460g05010.1	emb|CDY26247.1|	***-	BnaA06g11700D [Brassica napus]		
Niben101Ctg11901g00001.1	sp|Q5AS82|GMT1_EMENI	--*-	GDP-mannose transporter 1	IPR029663 (GDP-mannose transporter GONST4, plant)	GO:0005794 (Golgi apparatus), GO:0015780 (nucleotide-sugar transport)
Niben101Ctg14916g00001.1	sp|Q8L5J1|MAN4_SOLLC	***-	Mannan endo-1,4-beta-mannosidase 4	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01749g04011.1	sp|Q54G07|SLMO_DICDI	***-	Protein slowmo homolog	IPR006797 (PRELI/MSF1)	
Niben101Scf12382g00011.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf02601g07015.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf07370g00009.1	emb|CDY22510.1|	***-	BnaC03g23200D [Brassica napus]		
Niben101Scf02772g02001.1	AT3G25780.1	***-	allene oxide cyclase 3 LENGTH=258	IPR009410 (Allene oxide cyclase)	GO:0009507 (chloroplast), GO:0016853 (isomerase activity)
Niben101Scf09696g00028.1	sp|P24794|COX1_BETVU	****	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01958g03003.1	sp|P34091|RL6_MESCR	***-	60S ribosomal protein L6	IPR000915 (60S ribosomal protein L6E), IPR005568 (Ribosomal protein L6, N-terminal), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04554g01001.1	sp|Q7ZZN9|CRVP_PROJR	--*-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf09813g00005.1	sp|Q9F187|METE_CUPNE	****	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	IPR006276 (Cobalamin-independent methionine synthase)	GO:0003871 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity), GO:0008270 (zinc ion binding), GO:0008652 (cellular amino acid biosynthetic process), GO:0009086 (methionine biosynthetic process)
Niben101Scf05135g03004.1	sp|O65351|SUBL_ARATH	--*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf00006g01002.1	sp|Q9FIG6|DIR1_ARATH	*-*-	Dirigent protein 1	IPR004265 (Plant disease resistance response protein)	
Niben101Scf01970g01011.1	ref|XP_007034249.1|	***-	Non-imprinted in Prader-Willi/Angelman syndrome region protein [Theobroma cacao] gb|EOY05175.1| Non-imprinted in Prader-Willi/Angelman syndrome region protein [Theobroma cacao]	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf37110g00001.1	gb|KEH24348.1|	--*-	sister-chromatide cohesion protein [Medicago truncatula]		
Niben101Scf02078g06002.1	sp|A8GW07|CH60_RICB8	***-	60 kDa chaperonin	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding), GO:0042026 (protein refolding), GO:0044267 (cellular protein metabolic process)
Niben101Scf00833g03009.1	ref|XP_007018881.1|	*-*-	F-box and Leucine Rich Repeat domains containing protein, putative isoform 3 [Theobroma cacao] gb|EOY16106.1| F-box and Leucine Rich Repeat domains containing protein, putative isoform 3 [Theobroma cacao]		
Niben101Scf02648g02005.1	sp|Q1ACK9|MATK_CHAVU	--*-	Maturase K	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf12094g00014.1	sp|Q9SP32|DCL1_ARATH	*-**	Endoribonuclease Dicer homolog 1	IPR005034 (Dicer dimerisation domain)	GO:0016891 (endoribonuclease activity, producing 5'-phosphomonoesters)
Niben101Scf01166g01008.1	AT4G08310.1	*-*-	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages;		
Niben101Scf04193g02006.1	sp|F4K5J1|MYO17_ARATH	*-**	Myosin-17	IPR004009 (Myosin, N-terminal, SH3-like)	GO:0003774 (motor activity), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf03085g07013.1	AT4G35160.1	****	O-methyltransferase family protein LENGTH=382	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf04644g00013.1	sp|O04421|SRP14_ARATH	****	Signal recognition particle 14 kDa protein	IPR003210 (Signal recognition particle, SRP14 subunit), IPR009018 (Signal recognition particle, SRP9/SRP14 subunit)	GO:0005786 (signal recognition particle, endoplasmic reticulum targeting), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0030942 (endoplasmic reticulum signal peptide binding), GO:0048500 (signal recognition particle)
Niben101Scf01143g11007.1	AT5G61010.1	****	exocyst subunit exo70 family protein E2 LENGTH=639	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf05030g02007.1			Unknown protein		
Niben101Scf02903g01004.1	AT3G54070.1	***-	Ankyrin repeat family protein LENGTH=574	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein), IPR029472 (Gag-polypeptide of LTR copia-type)	GO:0005515 (protein binding)
Niben101Scf03038g12005.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06374g00016.1	sp|P55180|GALE_BACSU	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005886 (UDP-glucose 4-epimerase GalE), IPR025308 (UDP-glucose 4-epimerase C-terminal domain)	GO:0003824 (catalytic activity), GO:0003978 (UDP-glucose 4-epimerase activity), GO:0006012 (galactose metabolic process), GO:0050662 (coenzyme binding)
Niben101Ctg09152g00001.1	sp|Q6NRY2|NOL6_XENLA	*-*-	Nucleolar protein 6	IPR005554 (Nrap protein)	
Niben101Scf10431g00032.1	AT3G12270.1	****	protein arginine methyltransferase 3 LENGTH=601	IPR025799 (Protein arginine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity)
Niben101Scf01319g01002.1	sp|F4I0N3|Y1572_ARATH	***-	WEB family protein		
Niben101Scf12205g02003.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00099g00017.1	emb|CDX95057.1|	***-	BnaC05g06140D [Brassica napus]		
Niben101Scf01785g00005.1			Unknown protein		
Niben101Scf06529g02012.1	sp|Q8VY91|RR6_ARATH	***-	30S ribosomal protein S6 alpha, chloroplastic	IPR000529 (Ribosomal protein S6)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf12320g00013.1	sp|Q6CFJ0|FIS1_YARLI	*-**	Mitochondria fission 1 protein	IPR016543 (Mitochondria fission 1 protein), IPR028058 (Fis1, N-terminal tetratricopeptide repeat), IPR028061 (Fis1, C-terminal tetratricopeptide repeat)	GO:0000266 (mitochondrial fission), GO:0005515 (protein binding)
Niben101Scf04077g04006.1	AT1G31480.1	***-	shoot gravitropism 2 (SGR2) LENGTH=933	IPR004177 (DDHD), IPR029058 (Alpha/Beta hydrolase fold)	GO:0046872 (metal ion binding)
Niben101Scf02336g02011.1	gb|KEH36604.1|	****	myb-like DNA-binding domain, shaqkyf class protein [Medicago truncatula]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf00927g06003.1	emb|CDY13349.1|	***-	BnaC06g14080D [Brassica napus]		
Niben101Scf18745g01026.1	AT1G66480.1	***-	plastid movement impaired 2 LENGTH=225	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf07591g01003.1	AT1G68390.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=408	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf00212g01007.1	gb|EEZ33517.1|	***-	conserved hypothetical protein [Brucella sp. 83/13]		
Niben101Scf09554g00006.1	sp|Q9LVA0|BAG7_ARATH	*-*-	BAG family molecular chaperone regulator 7	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf11737g00021.1	sp|Q9ZQW8|U2AFA_ORYSJ	--*-	Splicing factor U2af small subunit A		
Niben101Scf01604g01002.1	sp|A1USF7|RPIA_BARBK	--*-	Ribose-5-phosphate isomerase A		
Niben101Ctg15110g00004.1	sp|Q9FN08|BGA10_ARATH	*-*-	Beta-galactosidase 10	IPR001944 (Glycoside hydrolase, family 35)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf12372g00005.1	AT1G10830.1	***-	15-cis-zeta-carotene isomerase LENGTH=367	IPR009915 (NnrU)	
Niben101Scf12954g02008.1	sp|Q948T9|RBOHB_SOLTU	*-**	Respiratory burst oxidase homolog protein B	IPR013121 (Ferric reductase, NAD binding), IPR029654 (Respiratory burst oxidase homologue protein B)	GO:0016174 (NAD(P)H oxidase activity), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00165g04007.1	sp|Q9LT79|PUB25_ARATH	***-	U-box domain-containing protein 25	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf02475g07002.1	AT2G41370.1	***-	Ankyrin repeat family protein / BTB/POZ domain-containing protein LENGTH=491	IPR011333 (BTB/POZ fold), IPR020683 (Ankyrin repeat-containing domain), IPR024228 (Domain of unknown function DUF3420)	GO:0005515 (protein binding)
Niben101Scf05177g01019.1	AT5G23370.1	***-	GRAM domain-containing protein / ABA-responsive protein-related LENGTH=219	IPR004182 (GRAM domain)	
Niben101Scf04703g11015.1			Unknown protein		
Niben101Scf06213g00004.1	sp|Q8GUP1|CTF77_ARATH	***-	Cleavage stimulation factor subunit 77	IPR008847 (Suppressor of forked), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006396 (RNA processing), GO:0006397 (mRNA processing)
Niben101Scf07883g04001.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf00503g01003.1	AT4G01070.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf07474g00004.1	sp|Q90Y35|ZN622_CHICK	*-*-	Zinc finger protein 622		
Niben101Scf04206g01012.1	tpg|DAA62158.1|	***-	TPA: hypothetical protein ZEAMMB73_942245 [Zea mays]		
Niben101Scf02941g01010.1	gb|AES59797.2|	*-*-	LA-related protein 6 LA RNA-binding domain protein [Medicago truncatula]	IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf00104g02012.1	AT2G30570.1	****	photosystem II reaction center W LENGTH=133	IPR009806 (Photosystem II PsbW, class 2)	GO:0009507 (chloroplast), GO:0009523 (photosystem II), GO:0015979 (photosynthesis)
Niben101Scf02756g01006.1			Unknown protein		
Niben101Scf05028g00004.1	sp|Q20390|PPT1_CAEEL	****	Palmitoyl-protein thioesterase 1	IPR002472 (Palmitoyl protein thioesterase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0002084 (protein depalmitoylation), GO:0008474 (palmitoyl-(protein) hydrolase activity), GO:0098599 (palmitoyl hydrolase activity)
Niben101Scf02074g05018.1	ref|WP_027484311.1|	--*-	chloride channel protein [Rhodanobacter sp. OR87]		
Niben101Scf04319g04007.1	AT4G00340.1	****	receptor-like protein kinase 4 LENGTH=818	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf01078g00022.1	sp|Q9SB63|MOS1_ARATH	*-*-	Protein MODIFIER OF SNC1 1	IPR009738 (BAT2, N-terminal)	
Niben101Scf02917g00023.1	AT3G48410.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=385	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03253g01020.1	sp|Q03066|RPSC_NOSS1	****	RNA polymerase sigma-C factor	IPR014284 (RNA polymerase sigma-70 like domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Scf04099g08002.1	sp|O81641|ILL3_ARATH	****	IAA-amino acid hydrolase ILR1-like 3	IPR002933 (Peptidase M20)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01507g01016.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf10541g00017.1	sp|Q9C7F5|NTF2_ARATH	****	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2)	GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf04879g06001.1	AT1G74040.1	****	2-isopropylmalate synthase 1 LENGTH=631	IPR005671 (2-isopropylmalate synthase, bacterial-type)	GO:0003824 (catalytic activity), GO:0003852 (2-isopropylmalate synthase activity), GO:0009098 (leucine biosynthetic process), GO:0019752 (carboxylic acid metabolic process), GO:0046912 (transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer)
Niben101Scf00781g06013.1	sp|Q8RWM3|MED27_ARATH	*-*-	Mediator of RNA polymerase II transcription subunit 27		
Niben101Scf03652g03003.1	sp|Q38825|IAA7_ARATH	***-	Auxin-responsive protein IAA7	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf02793g17003.1	sp|O48520|DPOD2_ARATH	***-	DNA polymerase delta small subunit	IPR024826 (DNA polymerase delta/II small subunit family)	
Niben101Scf01143g06001.1	sp|Q94JW8|SPL6_ARATH	*-**	Squamosa promoter-binding-like protein 6	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Ctg04075g00002.1	sp|Q8VXV7|LDL1_ARATH	*-*-	Lysine-specific histone demethylase 1 homolog 1	IPR002937 (Amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05241g01006.1	sp|Q9ZWC5|SCL18_ARATH	***-	Scarecrow-like protein 18	IPR005202 (Transcription factor GRAS), IPR030017 (Scarecrow-like protein 18/MONOCULM 1)	GO:0005634 (nucleus), GO:0010223 (secondary shoot formation)
Niben101Scf02793g22002.1			Unknown protein		
Niben101Scf10542g00010.1	sp|Q6PBQ2|CHMP7_DANRE	***-	Charged multivesicular body protein 7	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf03634g02002.1	AT1G58030.1	*-**	cationic amino acid transporter 2 LENGTH=635	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf08390g04002.1	sp|Q9LT84|U496M_ARATH	***-	UPF0496 protein	IPR007749 (Protein of unknown function DUF677)	
Niben101Scf04090g02004.1	sp|P25872|PAL1_TOBAC	*-**	Phenylalanine ammonia-lyase	IPR001106 (Aromatic amino acid lyase), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf00257g02001.1	ref|NP_567897.1|	*-*-	paramy [Arabidopsis thaliana]		
Niben101Scf02366g06014.1	sp|Q96300|14337_ARATH	***-	14-3-3-like protein GF14 nu	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf02182g18007.1	emb|CDY61097.1|	*-*-	BnaC06g41640D [Brassica napus]		
Niben101Scf00283g02004.1			Unknown protein		
Niben101Scf34955g00002.1	gb|KEH21034.1|	--*-	eukaryotic aspartyl protease family protein [Medicago truncatula]	IPR021109 (Aspartic peptidase domain)	
Niben101Scf01943g04010.1	ref|WP_017630832.1|	****	membrane protein [Vibrio sp. 624788]	IPR000620 (EamA domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf12159g09002.1	AT2G38840.1	****	Guanylate-binding family protein LENGTH=602	IPR003191 (Guanylate-binding protein, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf02497g08021.1	sp|O04019|PS6AB_ARATH	*-*-	26S protease regulatory subunit 6A homolog B	IPR003959 (ATPase, AAA-type, core), IPR007330 (MIT), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00688g02007.1	sp|Q7TUA3|FMT_PROMP	*-*-	Methionyl-tRNA formyltransferase	IPR004810 (Formyltetrahydrofolate deformylase)	GO:0006189 ('de novo' IMP biosynthetic process), GO:0008864 (formyltetrahydrofolate deformylase activity), GO:0009058 (biosynthetic process), GO:0016742 (hydroxymethyl-, formyl- and related transferase activity)
Niben101Scf06749g00002.1	sp|Q8T2T7|TOP3_DICDI	*-**	DNA topoisomerase 3	IPR000380 (DNA topoisomerase, type IA), IPR023405 (DNA topoisomerase, type IA, core domain)	GO:0003677 (DNA binding), GO:0003916 (DNA topoisomerase activity), GO:0003917 (DNA topoisomerase type I activity), GO:0006265 (DNA topological change)
Niben101Scf01340g02005.1	sp|A5V9P7|RS16_SPHWW	***-	30S ribosomal protein S16	IPR000307 (Ribosomal protein S16), IPR023803 (Ribosomal protein S16 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01827g02010.1	gb|KEH33178.1|	*-*-	leguminosin group485 secreted peptide [Medicago truncatula]		
Niben101Scf01002g13005.1	ref|XP_006370166.1|	--*-	pollen Ole e 1 allergen and extensin family protein [Populus trichocarpa] gb|ERP66735.1| pollen Ole e 1 allergen and extensin family protein [Populus trichocarpa]		
Niben101Scf02794g06009.1	AT1G05280.1	***-	Protein of unknown function (DUF604) LENGTH=461	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf02688g04005.1	gb|AAL14650.1|	--*-	2-oxoglutarate-dependent dioxygenase [Arabidopsis thaliana]		
Niben101Scf24861g00010.1	gb|KEH36135.1|	****	metalloendopeptidase/zinc ion-binding protein [Medicago truncatula]	IPR000742 (Epidermal growth factor-like domain), IPR001577 (Peptidase M8, leishmanolysin), IPR020067 (Frizzled domain)	GO:0004222 (metalloendopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis), GO:0007155 (cell adhesion), GO:0016020 (membrane)
Niben101Scf00854g03008.1	sp|Q7J1C4|PSBL_ACOCL	*-**	Photosystem II reaction center protein L	IPR003372 (Photosystem II PsbL)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0015979 (photosynthesis), GO:0016020 (membrane)
Niben101Scf00047g03013.1	AT1G14780.1	***-	MAC/Perforin domain-containing protein LENGTH=627	IPR020864 (Membrane attack complex component/perforin (MACPF) domain)	
Niben101Scf03298g04011.1			Unknown protein	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf02030g05009.1	sp|O14435|GBB_CRYPA	*-**	Guanine nucleotide-binding protein subunit beta	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf02913g00014.1	sp|Q42656|AGAL_COFAR	***-	Alpha-galactosidase	IPR000111 (Glycoside hydrolase, clan GH-D), IPR013780 (Glycosyl hydrolase, family 13, all-beta)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03208g06007.1	sp|Q02084|A33_PLEWA	--**	Zinc-binding protein A33	IPR000433 (Zinc finger, ZZ-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02031g00024.1			Unknown protein		
Niben101Scf07162g03020.1	sp|B7K9I2|PDXH_CYAP7	*-**	Pyridoxine/pyridoxamine 5'-phosphate oxidase	IPR000659 (Pyridoxamine 5'-phosphate oxidase), IPR004443 (YjeF N-terminal domain)	GO:0004733 (pyridoxamine-phosphate oxidase activity), GO:0008615 (pyridoxine biosynthetic process), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00468g00007.1	sp|Q8VYR7|BOR1_ARATH	***-	Boron transporter 1	IPR003020 (Bicarbonate transporter, eukaryotic)	GO:0005452 (inorganic anion exchanger activity), GO:0006820 (anion transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf04653g05004.1	AT1G32910.1	****	HXXXD-type acyl-transferase family protein LENGTH=464	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00167g00019.1	sp|Q6DUX3|TCTP_SOLLC	--*-	Translationally-controlled tumor protein homolog		
Niben101Scf04007g05007.1	sp|Q9SND4|HEC2_ARATH	*-*-	Transcription factor HEC2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf11159g00003.1			Unknown protein		
Niben101Scf02134g00005.1	emb|CDY04562.1|	***-	BnaA07g13880D [Brassica napus]		
Niben101Scf00152g25013.1	sp|Q9FXI9|GUN2_ARATH	***-	Endoglucanase 2	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf18440g00002.1	sp|Q02971|CADH7_ARATH	*-*-	Cinnamyl alcohol dehydrogenase 7	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07741g04003.1	AT1G51560.1	***-	Pyridoxamine 5'-phosphate oxidase family protein LENGTH=392	IPR012349 (FMN-binding split barrel)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04934g04030.1	sp|P55200|KMT2A_MOUSE	*-*-	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain)	GO:0005515 (protein binding)
Niben101Scf05988g06003.1	ref|XP_007043932.1|	***-	B-zip transcription factor, putative isoform 2 [Theobroma cacao] gb|EOX99763.1| B-zip transcription factor, putative isoform 2 [Theobroma cacao]	IPR012458 (Protein of unknown function DUF1664)	
Niben101Scf39220g00014.1	gb|KEH25033.1|	--*-	plant calmodulin-binding-like protein [Medicago truncatula]		
Niben101Scf03592g00002.1	sp|Q5XJ97|C1D_DANRE	*-*-	Nuclear nucleic acid-binding protein C1D	IPR007146 (Sas10/Utp3/C1D), IPR011082 (Exosome-associated factor Rrp47/DNA strand repair C1D)	
Niben101Scf03989g02014.1	AT3G33520.1	***-	actin-related protein 6 LENGTH=421	IPR004000 (Actin family), IPR018109 (Folylpolyglutamate synthetase, conserved site)	GO:0004326 (tetrahydrofolylpolyglutamate synthase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006338 (chromatin remodeling), GO:0009396 (folic acid-containing compound biosynthetic process)
Niben101Scf07162g01016.1	AT1G74860.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=400		
Niben101Scf10492g01002.1	sp|P31928|SPSA_SPIOL	****	Sucrose-phosphate synthase	IPR012819 (Sucrose phosphate synthase, plant)	GO:0005985 (sucrose metabolic process), GO:0009058 (biosynthetic process), GO:0046524 (sucrose-phosphate synthase activity)
Niben101Scf02730g01032.1	sp|P47895|AL1A3_HUMAN	****	Aldehyde dehydrogenase family 1 member A3	IPR015657 (Aminobutyraldehyde dehydrogenase), IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf21334g00009.1	AT3G14270.1	****	phosphatidylinositol-4-phosphate 5-kinase family protein LENGTH=1791	IPR002423 (Chaperonin Cpn60/TCP-1), IPR002498 (Phosphatidylinositol-4-phosphate 5-kinase, core), IPR027409 (GroEL-like apical domain), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0044267 (cellular protein metabolic process), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf04240g00008.1	sp|C4XGC2|NQOR_DESMR	***-	NAD(P)H dehydrogenase (quinone)	IPR010089 (Flavoprotein WrbA), IPR029039 (Flavoprotein-like)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0045892 (negative regulation of transcription, DNA-templated)
Niben101Scf00611g09003.1	ref|NP_001043414.2|	*-*-	[Oryza sativa Japonica Group] dbj|BAF05328.2| [Oryza sativa Japonica Group]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf08721g01047.1	AT1G03250.2	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. LENGTH=251	IPR001374 (Single-stranded nucleic acid binding R3H)	GO:0003676 (nucleic acid binding)
Niben101Scf00875g05008.1			Unknown protein		
Niben101Scf17442g00002.1	sp|Q55738|GYRA_SYNY3	****	DNA gyrase subunit A	IPR005743 (DNA gyrase, subunit A), IPR024946 (Arginine repressor C-terminal-like domain)	GO:0003677 (DNA binding), GO:0003916 (DNA topoisomerase activity), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0006259 (DNA metabolic process), GO:0006265 (DNA topological change)
Niben101Scf01051g09030.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf17730g00014.1	sp|Q68FK8|DHX9_XENLA	*-**	ATP-dependent RNA helicase A-like protein	IPR001374 (Single-stranded nucleic acid binding R3H), IPR001482 (Type II secretion system protein E), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0006810 (transport)
Niben101Scf00975g00007.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf05997g00008.1	AT1G03920.1	****	Protein kinase family protein LENGTH=569	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00238g00001.1	sp|P81392|MYB06_ANTMA	--*-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf00163g08008.1	sp|B2KEX4|ATPE_ELUMP	****	ATP synthase epsilon chain	IPR001469 (ATPase, F1 complex, delta/epsilon subunit)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf00687g04010.1	gb|ACG35711.1|	--*-	dnaJ domain containing protein [Zea mays]	IPR001623 (DnaJ domain)	
Niben101Scf06788g00015.1	sp|Q9SXS8|ERF3_TOBAC	*-**	Ethylene-responsive transcription factor 3	IPR001471 (AP2/ERF domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08636g00006.1	sp|O82514|KAD4_ARATH	--**	Adenylate kinase 4	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf02300g00026.1	sp|Q9HN64|IF1A1_HALSA	--**	Translation initiation factor 1A 1	IPR001253 (Translation initiation factor 1A (eIF-1A))	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf00551g04013.1	sp|Q9FK16|AGP22_ARATH	***-	Arabinogalactan peptide 22	IPR009424 (Arabinogalactan peptide, AGP)	
Niben101Scf33522g00003.1	sp|P17967|PDI_YEAST	*-**	Protein disulfide-isomerase	IPR012336 (Thioredoxin-like fold)	GO:0016853 (isomerase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf08157g02007.1	sp|Q9LSQ6|PBP1_ARATH	****	Calcium-binding protein PBP1	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00854g06031.1	gb|AGL75410.1|	--*-	NADH dehydrogenase subunit 1, partial (mitochondrion) [Utricularia gibba]		
Niben101Scf07673g04009.1	AT2G43000.1	***-	NAC domain containing protein 42 LENGTH=275	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04044g17003.1	sp|Q7S7Z6|PPIB_NEUCR	*-**	Peptidyl-prolyl cis-trans isomerase B	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf00297g00009.1	ref|XP_003599588.1|	*-*-	Cc-nbs-lrr resistance protein [Medicago truncatula]	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf03786g04016.1			Unknown protein		
Niben101Scf08801g00007.1	emb|CDY71138.1|	*-*-	BnaAnng36260D [Brassica napus]	IPR012334 (Pectin lyase fold)	
Niben101Scf08580g00002.1	sp|Q8RV04|TI141_ARATH	***-	Mitochondrial import inner membrane translocase subunit TIM14-1	IPR001623 (DnaJ domain)	
Niben101Scf04430g01003.1	sp|Q9FM94|FBD21_ARATH	***-	FBD-associated F-box protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf12969g01004.1	ref|XP_002531408.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF30992.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07965g02009.1	ref|XP_002515052.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF47606.1| conserved hypothetical protein [Ricinus communis]	IPR027942 (Sieve element occlusion, N-terminal), IPR027944 (Sieve element occlusion, C-terminal)	
Niben101Scf10810g00007.1	gb|ABA99680.2|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf02741g00001.1	sp|P10978|POLX_TOBAC	--*-	Retrovirus-related Pol polyprotein from transposon TNT 1-94		
Niben101Scf03377g05016.1	AT5G22070.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=362	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf04007g01001.1	sp|Q8VY63|MPU12_ARATH	*-*-	Mannose-P-dolichol utilization defect 1 protein homolog 2		
Niben101Scf00055g01004.1	sp|O49929|OEP24_PEA	***-	Outer envelope pore protein 24, chloroplastic		
Niben101Scf01863g03009.1	AT5G65910.1	***-	BSD domain-containing protein LENGTH=432	IPR005607 (BSD)	
Niben101Scf06375g03006.1	AT5G64740.1	****	cellulose synthase 6 LENGTH=1084	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf06493g01011.1	AT3G02300.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=471	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf05158g01066.1	sp|Q39103|G3OX1_ARATH	*-*-	Gibberellin 3-beta-dioxygenase 1		
Niben101Scf00797g19012.1	sp|B6ZLK2|CHD1_CHICK	****	Chromodomain-helicase-DNA-binding protein 1	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR016197 (Chromo domain-like), IPR025260 (Domain of unknown function DUF4208), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf39550g00001.1	sp|Q9LFV6|RPOT2_ARATH	--*-	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial		
Niben101Scf07123g01002.1	sp|O22193|PUB4_ARATH	***-	U-box domain-containing protein 4	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf06365g00001.1	sp|Q9LHP1|RL74_ARATH	***-	60S ribosomal protein L7-4	IPR005998 (Ribosomal protein L7, eukaryotic)	
Niben101Scf07987g01012.1	AT4G14410.1	*-*-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=283	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00859g01013.1	ref|XP_002869709.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH45968.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf05961g02020.1	AT3G07480.1	***-	2Fe-2S ferredoxin-like superfamily protein LENGTH=159	IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf00492g02002.1	AT5G04160.1	***-	Nucleotide-sugar transporter family protein LENGTH=309	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf02071g04001.1	ref|NP_001045022.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf01126g01005.1	sp|Q71VM4|IMA1A_ORYSJ	***-	Importin subunit alpha-1a	IPR002652 (Importin-alpha, importin-beta-binding domain), IPR016024 (Armadillo-type fold), IPR024931 (Importin subunit alpha)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006606 (protein import into nucleus), GO:0008565 (protein transporter activity)
Niben101Scf00247g02006.1	emb|CAE04764.3|	*-*-	OSJNBa0079C19.5 [Oryza sativa Japonica Group]		
Niben101Scf01689g00003.1	ref|XP_007030936.1|	***-	Mog1/PsbP/DUF1795-like phot isoform 1 [Theobroma cacao]	IPR016123 (Mog1/PsbP, alpha/beta/alpha sandwich)	
Niben101Scf01837g02002.1	gb|AES62805.2|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf10968g03005.1	sp|Q9NRP7|STK36_HUMAN	*-**	Serine/threonine-protein kinase 36	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13643g01008.1	gb|KEH17617.1|	***-	structural constituent of cell wall protein, putative [Medicago truncatula]	IPR010820 (Protein of unknown function DUF1421)	
Niben101Scf02822g02003.1			Unknown protein		
Niben101Scf07703g01002.1	sp|Q9C9S4|TPPB_ARATH	****	Trehalose-phosphate phosphatase B	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf01862g02001.1	ref|XP_007019530.1|	*-*-	Sphingomyelin synthetase family protein isoform 4 [Theobroma cacao] gb|EOY16755.1| Sphingomyelin synthetase family protein isoform 4 [Theobroma cacao]		
Niben101Scf01061g01002.1	sp|Q2UVJ5|CCC1_ARATH	*-*-	Cation-chloride cotransporter 1		
Niben101Scf17398g00008.1	AT1G10210.1	****	mitogen-activated protein kinase 1 LENGTH=370	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00369g24005.1	AT5G27030.2	***-	TOPLESS-related 3 LENGTH=1134	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR027728 (Topless family)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00837g09003.1			Unknown protein		
Niben101Scf07073g04002.1	sp|Q9LSL1|BH093_ARATH	***-	Transcription factor bHLH93	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04951g03013.1	gb|ABJ99598.1|	--*-	NBS-LRR type resistance protein [Beta vulgaris]		
Niben101Scf01718g07001.1			Unknown protein		
Niben101Scf08151g00032.1	sp|Q9LV40|ROGF8_ARATH	****	Rho guanine nucleotide exchange factor 8	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf03849g00010.1			Unknown protein		
Niben101Scf04639g10008.1	ref|XP_007013964.1|	*-*-	Fatty acid hydroxylase superfamily [Theobroma cacao] gb|EOY31583.1| Fatty acid hydroxylase superfamily [Theobroma cacao]	IPR021940 (Uncharacterised domain Wax2, C-terminal)	
Niben101Scf13571g00012.1	sp|Q12873|CHD3_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 3	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding)
Niben101Scf13802g04006.1	sp|Q75JQ9|DPOE3_DICDI	*-**	DNA polymerase epsilon subunit 3	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf08947g02010.1	ref|XP_002514797.1|	****	hydrolase, putative [Ricinus communis] gb|EEF47351.1| hydrolase, putative [Ricinus communis]	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf02852g00013.1	AT2G04030.1	***-	Chaperone protein htpG family protein LENGTH=780	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf08755g02027.1	sp|O49436|PP327_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf01795g14002.1	sp|P93011|PP182_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00573g04004.1	sp|Q9LUZ4|C3H66_ARATH	***-	Zinc finger CCCH domain-containing protein 66	IPR000571 (Zinc finger, CCCH-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf09540g00001.1	gb|KEH42602.1|	-***	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00163g07017.1			Unknown protein		
Niben101Scf10440g01002.1	sp|P62980|RS27A_SOLLC	*-*-	Ubiquitin-40S ribosomal protein S27a	IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00597g08037.1	sp|Q6NXD8|DEN5B_DANRE	*-*-	DENN domain-containing protein 5B	IPR001194 (DENN domain), IPR005112 (dDENN domain), IPR005113 (uDENN domain)	
Niben101Scf00321g01002.1	sp|P34422|DPF6_CAEEL	*-**	Dipeptidyl peptidase family member 6	IPR011042 (Six-bladed beta-propeller, TolB-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf02541g09006.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06200g03040.1	sp|P34114|PHS2_DICDI	*-**	Glycogen phosphorylase 2	IPR000811 (Glycosyl transferase, family 35)	GO:0005975 (carbohydrate metabolic process), GO:0008184 (glycogen phosphorylase activity)
Niben101Scf04953g09010.1	AT2G37710.1	*-**	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf17635g01007.1	sp|Q54KL5|WDR5_DICDI	*-*-	WD repeat-containing protein 5 homolog	IPR006594 (LisH dimerisation motif), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf15233g00005.1			Unknown protein		
Niben101Scf02425g00015.1	sp|Q1C3U7|SPEE_YERPA	***-	Polyamine aminopropyl transferase	IPR001045 (Spermidine/spermine synthases family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003824 (catalytic activity)
Niben101Scf02367g05035.1	sp|Q9S7L9|CX6B1_ARATH	*-**	Cytochrome c oxidase subunit 6b-1	IPR003213 (Cytochrome c oxidase, subunit VIb)	GO:0004129 (cytochrome-c oxidase activity), GO:0005739 (mitochondrion)
Niben101Scf03049g01001.1	sp|Q3JEJ6|RS6_NITOC	*-*-	30S ribosomal protein S6	IPR000529 (Ribosomal protein S6), IPR014717 (Translation elongation factor EF1B/ribosomal protein S6)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf03737g06012.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf09998g01004.1	ref|XP_003601543.1|	***-	Ubiquitin and WLM domain-containing protein [Medicago truncatula]	IPR006567 (PUG domain), IPR013536 (WLM), IPR018997 (PUB domain)	GO:0005515 (protein binding)
Niben101Scf04287g06007.1	sp|A6VZ30|SUCC_MARMS	***-	Succinyl-CoA ligase [ADP-forming] subunit beta	IPR013650 (ATP-grasp fold, succinyl-CoA synthetase-type), IPR016102 (Succinyl-CoA synthetase-like)	GO:0005524 (ATP binding)
Niben101Scf03857g02009.1	emb|CDY09737.1|	*-*-	BnaC07g33240D [Brassica napus]		
Niben101Scf06205g01009.1	ref|NP_180763.1|	****	Acyl-CoA N-acyltransferases (NAT) superfamily protein [Arabidopsis thaliana] putative alanine acetyl transferase [Arabidopsis thaliana] gb|AAD15401.1| putative alanine acetyl transferase [Arabidopsis thaliana] gb|ABD60717.1| [Arabidopsis thaliana] gb|AEC08624.1| GCN5-related N-acetyltransferase-like protein [Arabidopsis thaliana]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf00163g15003.1	sp|O80513|CCU41_ARATH	****	Cyclin-U4-1	IPR013763 (Cyclin-like), IPR013922 (Cyclin PHO80-like)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0019901 (protein kinase binding)
Niben101Scf00457g07013.1	emb|CDX71904.1|	***-	BnaC08g29700D [Brassica napus]	IPR027850 (Protein of unknown function DUF4504)	
Niben101Scf04157g00003.1	emb|CDY19669.1|	*-*-	BnaC09g29250D [Brassica napus]		
Niben101Scf02621g02025.1	sp|Q9M7R0|ALL8_OLEEU	--**	Calcium-binding allergen Ole e 8	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf07801g00001.1	sp|Q9LE82|RAGP1_ARATH	*-*-	RAN GTPase-activating protein 1	IPR025265 (WPP domain)	
Niben101Scf00110g05010.1			Unknown protein		
Niben101Scf07631g01011.1	sp|Q9PKF7|FABG_CHLMU	--*-	3-oxoacyl-[acyl-carrier-protein] reductase FabG	IPR016040 (NAD(P)-binding domain)	
Niben101Scf03908g00011.1	sp|Q21YC4|NUOD_RHOFT	--*-	NADH-quinone oxidoreductase subunit D	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05468g02013.1	emb|CCA17912.1|	*-*-	ion channel putative [Albugo laibachii Nc14]		
Niben101Scf00069g06001.1	sp|Q332R7|YCF2_LACSA	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf02842g00014.1	sp|Q98AX9|CH603_RHILO	***-	60 kDa chaperonin 3	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding), GO:0042026 (protein refolding), GO:0044267 (cellular protein metabolic process)
Niben101Scf04020g06013.1	AT1G65730.1	***-	YELLOW STRIPE like 7 LENGTH=688	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf00854g04026.1	gb|AFI44321.1|	***-	maturase (mitochondrion) [Silene vulgaris]	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf05399g04012.1	ref|XP_003606863.1|	*-*-	Serine/threonine protein kinase atr [Medicago truncatula]		
Niben101Scf04703g04004.1	sp|Q1JPL7|PME18_ARATH	****	Pectinesterase/pectinesterase inhibitor 18	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02908g03007.1	sp|O04376|2A5B_ARATH	****	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf02100g00007.1	sp|Q9FRL3|ERDL6_ARATH	****	Sugar transporter ERD6-like 6	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02128g00022.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01876g00008.1	sp|Q94AY3|DRIP2_ARATH	***-	E3 ubiquitin protein ligase DRIP2	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09796g00002.1	AT3G17980.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=177	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf05389g00009.1	gb|ACG43350.1|	***-	SLT1 protein [Zea mays]	IPR008978 (HSP20-like chaperone)	
Niben101Scf11588g00025.1	sp|Q9LNW3|P2C03_ARATH	*-*-	Protein phosphatase 2C 3	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf10559g01042.1	ref|NP_001062770.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf03652g01004.1	sp|Q55BF2|NMD3_DICDI	***-	60S ribosomal export protein NMD3	IPR007064 (NMD3)	
Niben101Scf02340g04001.1	gb|KEH31110.1|	*-*-	epoxide hydrolase-like protein [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05536g01001.1	sp|C0SVM5|BBX19_ARATH	****	B-box zinc finger protein 19	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf05206g05002.1	sp|D7KFC7|CSPLB_ARALL	***-	CASP-like protein 2A1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf06248g01010.1	ref|XP_001890573.1|	*-*-	tetratricopeptide repeat-containing protein [Laccaria bicolor S238N-H82] gb|EDQ98767.1| tetratricopeptide repeat-containing protein [Laccaria bicolor S238N-H82]		
Niben101Scf01267g00007.1	AT1G09960.1	*-**	sucrose transporter 4 LENGTH=510	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03766g14009.1	sp|O49255|NAC29_ARATH	-***	NAC transcription factor 29	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00916g00001.1	emb|CDX68715.1|	***-	BnaC01g07380D [Brassica napus]	IPR010471 (Protein of unknown function DUF1068)	
Niben101Scf02074g04038.1	ref|XP_002535265.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF27117.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05764g03006.1	sp|Q6DG32|S2536_DANRE	***-	Solute carrier family 25 member 36-A	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf04386g08001.1	AT5G36130.1	***-	Cytochrome P450 superfamily protein LENGTH=140	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06885g00006.1			Unknown protein		
Niben101Scf06884g00005.1	AT5G51740.1	*-**	Peptidase family M48 family protein LENGTH=442	IPR001915 (Peptidase M48)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf04717g01001.1	ref|XP_003610227.1|	*-*-	Ycf68 [Medicago truncatula]		
Niben101Scf24322g00011.1	AT5G05710.1	***-	Pleckstrin homology (PH) domain superfamily protein LENGTH=144	IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf00313g04010.1	sp|Q7XJ98|KATAM_ARATH	*-*-	Xyloglucan galactosyltransferase KATAMARI1	IPR004263 (Exostosin-like)	
Niben101Scf04786g00011.1	AT4G32270.1	*-*-	Ubiquitin-like superfamily protein LENGTH=239	IPR029071 (Ubiquitin-related domain)	
Niben101Scf00270g07003.1	sp|Q9C5Z2|EIF3H_ARATH	****	Eukaryotic translation initiation factor 3 subunit H	IPR027524 (Eukaryotic translation initiation factor 3 subunit H)	GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf07984g04001.1	AT3G50660.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07105g01009.1	sp|Q9SD82|RFA1B_ARATH	--*-	Replication protein A 70 kDa DNA-binding subunit B		
Niben101Scf02136g01001.1	sp|Q75VR0|TPC1B_TOBAC	*-*-	Two pore calcium channel protein 1B		
Niben101Scf04347g01031.1	AT5G24240.1	***-	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein LENGTH=574	IPR011009 (Protein kinase-like domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf02668g05020.1	sp|B6ZLK2|CHD1_CHICK	*-**	Chromodomain-helicase-DNA-binding protein 1	IPR000330 (SNF2-related), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf09527g00004.1	sp|Q7V1I2|SYL_PROMP	--*-	Leucine--tRNA ligase		
Niben101Scf04422g10004.1	emb|CDX78779.1|	***-	BnaA03g06910D [Brassica napus]		
Niben101Scf05633g01012.1	emb|CDY01313.1|	***-	BnaA07g10860D [Brassica napus]		
Niben101Ctg15825g00004.1			Unknown protein		
Niben101Scf06662g02015.1	AT1G70170.1	****	matrix metalloproteinase LENGTH=378	IPR021190 (Peptidase M10A), IPR024079 (Metallopeptidase, catalytic domain)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity), GO:0008270 (zinc ion binding), GO:0031012 (extracellular matrix)
Niben101Scf04653g06005.1	ref|XP_002523501.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF38840.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06955g02001.1	AT2G30390.2	****	ferrochelatase 2 LENGTH=522	IPR001015 (Ferrochelatase), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0004325 (ferrochelatase activity), GO:0006783 (heme biosynthetic process)
Niben101Scf11505g00002.1	sp|Q6D410|HIS8_PECAS	--*-	Histidinol-phosphate aminotransferase		
Niben101Scf08683g00006.1	AT3G14205.1	***-	Phosphoinositide phosphatase family protein LENGTH=808	IPR002013 (SAC domain), IPR030213 (Phosphoinositide phosphatase SAC)	GO:0007033 (vacuole organization), GO:0036092 (phosphatidylinositol-3-phosphate biosynthetic process), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf01795g04037.1	sp|Q9MA92|FPP3_ARATH	*-*-	Filament-like plant protein 3	IPR008587 (Filament-like plant protein)	
Niben101Scf05135g01006.1			Unknown protein		
Niben101Scf03889g01016.1	sp|P40934|CYB5_BRAOB	*-*-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf02750g03012.1	sp|Q6NDD1|ATPG_RHOPA	****	ATP synthase gamma chain	IPR000131 (ATPase, F1 complex, gamma subunit), IPR023632 (ATPase, F1 complex, gamma subunit conserved site), IPR023633 (ATPase, F1 complex, gamma subunit domain)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf02669g00006.1	sp|Q2L8Z4|RPOC1_GOSHI	*-**	DNA-directed RNA polymerase subunit beta'	IPR006592 (RNA polymerase, N-terminal), IPR007080 (RNA polymerase Rpb1, domain 1)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf06909g04003.1	sp|Q8RXT9|GDL8_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf06423g02007.1	sp|Q48GW4|FADA_PSE14	*-*-	3-ketoacyl-CoA thiolase	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04844g00003.1	sp|Q9ZPE7|EXO_ARATH	*-*-	Protein EXORDIUM	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf08516g03013.1	AT1G80530.1	***-	Major facilitator superfamily protein LENGTH=561	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf03332g02012.1	sp|Q8LG50|LPAT2_ARATH	****	1-acyl-sn-glycerol-3-phosphate acyltransferase 2	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf01779g01001.1	sp|Q9M088|E135_ARATH	***-	Glucan endo-1,3-beta-glucosidase 5	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07162g05018.1	sp|Q84WP6|NAC43_ARATH	--*-	NAC domain-containing protein 43	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05750g04013.1	AT5G63460.4	***-	SAP domain-containing protein LENGTH=174	IPR003034 (SAP domain), IPR018276 (Ubiquitin ligase, Det1/DDB1-complexing)	
Niben101Scf02074g03039.1			Unknown protein		
Niben101Scf07191g02016.1	sp|P48325|P2SAF_CYAPA	***-	Photosystem II stability/assembly factor HCF136	IPR016705 (Photosynthesis system II assembly factor Ycf48/Hcf136), IPR028203 (Photosynthesis system II assembly factor Ycf48/Hcf136-like domain)	
Niben101Scf09882g01001.1	sp|Q9LDE4|ERF83_ARATH	*-**	Ethylene-responsive transcription factor 7	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03403g02004.1	AT2G22560.1	*-*-	Kinase interacting (KIP1-like) family protein LENGTH=947	IPR011684 (KIP1-like)	
Niben101Scf03737g06013.1			Unknown protein		
Niben101Scf00854g07032.1			Unknown protein		
Niben101Scf01374g03022.1	AT1G15240.2	*-*-	Phox-associated domain;Phox-like;Sorting nexin, C-terminal LENGTH=1020		
Niben101Scf08350g00003.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00833g03008.1	sp|Q8GWJ6|MUB6_ARATH	*-*-	Membrane-anchored ubiquitin-fold protein 6	IPR029071 (Ubiquitin-related domain)	
Niben101Scf02090g01003.1			Unknown protein		
Niben101Scf02530g00003.1	sp|Q655R6|MOCOS_ORYSJ	--*-	Molybdenum cofactor sulfurase		
Niben101Scf06570g03014.1	sp|Q4RJN5|LIS1_TETNG	*-*-	Lissencephaly-1 homolog	IPR006594 (LisH dimerisation motif), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02207g00009.1	AT4G14940.1	****	amine oxidase 1 LENGTH=650	IPR000269 (Copper amine oxidase)	GO:0005507 (copper ion binding), GO:0008131 (primary amine oxidase activity), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00988g02020.1	sp|B2V890|RNPH_SULSY	***-	Ribonuclease PH	IPR015847 (Exoribonuclease, phosphorolytic domain 2), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027408 (PNPase/RNase PH domain)	
Niben101Scf02136g01002.1	sp|Q75VR1|TPC1A_TOBAC	*-**	Two pore calcium channel protein 1A	IPR005821 (Ion transport domain), IPR011992 (EF-hand domain pair), IPR027359 (Voltage-dependent channel, four helix bundle domain), IPR028801 (Two pore calcium channel protein 1)	GO:0005216 (ion channel activity), GO:0005245 (voltage-gated calcium channel activity), GO:0005509 (calcium ion binding), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01623g18009.1	AT1G02610.1	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=221	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022143 (Protein of unknown function DUF3675)	GO:0008270 (zinc ion binding)
Niben101Scf13203g01005.1	AT1G29690.1	***-	MAC/Perforin domain-containing protein LENGTH=561	IPR020864 (Membrane attack complex component/perforin (MACPF) domain)	
Niben101Scf04079g02003.1	sp|Q9LNT9|ASK4_ARATH	--*-	SKP1-like protein 4	IPR011333 (BTB/POZ fold)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf18395g00008.1	sp|Q8UGK1|ERA_AGRT5	--*-	GTPase Era	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02122g02016.1	sp|Q69ZU8|ANKR6_MOUSE	*-*-	Ankyrin repeat domain-containing protein 6	IPR020683 (Ankyrin repeat-containing domain), IPR021789 (Potassium channel, plant-type)	GO:0005515 (protein binding)
Niben101Scf00642g01001.1	AT4G34860.1	*-*-	Plant neutral invertase family protein LENGTH=571	IPR024746 (Glycosyl hydrolase family 100)	GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Ctg11520g00002.1	sp|A6UDV3|RL27_SINMW	***-	50S ribosomal protein L27	IPR001684 (Ribosomal protein L27)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01188g11016.1	AT3G60450.1	***-	Phosphoglycerate mutase family protein LENGTH=274	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf24322g00010.1	sp|O80439|RR31_ARATH	*-*-	30S ribosomal protein S31, chloroplastic		
Niben101Scf04717g01002.1	emb|CDX71650.1|	*-*-	BnaC09g26910D [Brassica napus]		
Niben101Scf06754g01018.1	ref|XP_007041513.1|	***-	Hydroxyproline-rich glycoprotein family protein, putative [Theobroma cacao] gb|EOX97344.1| Hydroxyproline-rich glycoprotein family protein, putative [Theobroma cacao]		
Niben101Scf12096g00004.1	sp|Q8IZU2|WDR17_HUMAN	*-*-	WD repeat-containing protein 17	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf05431g01008.1	ref|XP_003628960.1|	--**	GRF zinc finger containing protein [Medicago truncatula] gb|AET03436.1| GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf05468g02015.1	gb|KEH35238.1|	***-	rhodanese/cell cycle control phosphatase superfamily protein [Medicago truncatula]	IPR001763 (Rhodanese-like domain)	
Niben101Scf13680g02001.1	ref|NP_001042116.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf07121g00006.1	sp|B2FMY6|DNAJ_STRMK	--*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf10576g03011.1	sp|Q6QNU4|DDB1_SOLLC	*-**	DNA damage-binding protein 1	IPR004871 (Cleavage/polyadenylation specificity factor, A subunit, C-terminal), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf03764g04005.1	sp|Q895K2|DPO3_CLOTE	*-*-	DNA polymerase III PolC-type	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf00180g05015.1	emb|CAC95126.1|	--*-	gag-pol polyprotein [Populus deltoides]		
Niben101Scf03971g02016.1	AT3G02130.1	****	receptor-like protein kinase 2 LENGTH=1151	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06180g00001.1			Unknown protein		
Niben101Scf07121g01003.1	AT2G42110.1	***-	unknown protein; Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). LENGTH=137		
Niben101Scf14979g00002.1	sp|Q5ZKU5|RAB14_CHICK	***-	Ras-related protein Rab-14	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf07579g02010.1	AT5G61865.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=417		
Niben101Scf02716g00004.1	emb|CDY72280.1|	--*-	BnaCnng76880D [Brassica napus]		
Niben101Scf07137g00001.1	ref|XP_002525420.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF36910.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02423g02019.1	sp|Q6A085|ZN629_MOUSE	*-*-	Zinc finger protein 629	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00438g02009.1	sp|B2IVH7|GLO2_NOSP7	****	Hydroxyacylglutathione hydrolase	IPR017782 (Hydroxyacylglutathione hydrolase)	GO:0004416 (hydroxyacylglutathione hydrolase activity), GO:0006750 (glutathione biosynthetic process), GO:0008270 (zinc ion binding)
Niben101Scf34229g00004.1	sp|O23693|MLO4_ARATH	***-	MLO-like protein 4	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf07714g00001.1	AT5G54010.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=453	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02417g07006.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04907g05009.1	sp|O82702|VATG1_TOBAC	*-**	V-type proton ATPase subunit G 1	IPR005124 (Vacuolar (H+)-ATPase G subunit)	GO:0015992 (proton transport), GO:0016471 (vacuolar proton-transporting V-type ATPase complex), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances)
Niben101Scf02724g00020.1	sp|A8GDU4|SUFS_SERP5	*-*-	Cysteine desulfurase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf07740g00002.1	AT3G26560.1	****	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR012340 (Nucleic acid-binding, OB-fold), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf04931g00009.1	sp|Q9FKI0|FIMB5_ARATH	***-	Fimbrin-5	IPR001715 (Calponin homology domain)	GO:0005515 (protein binding)
Niben101Scf06850g00013.1			Unknown protein		
Niben101Scf03949g05014.1	sp|Q9FVV1|GDL28_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf05937g03001.1	sp|Q9SHE9|LBD4_ARATH	***-	LOB domain-containing protein 4	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf02312g06001.1	sp|Q7WTR3|MDTK_ERWAM	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03930g05039.1	AT5G12350.1	***-	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain LENGTH=1075	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR011993 (Pleckstrin homology-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0005543 (phospholipid binding), GO:0005938 (cell cortex), GO:0032065 (cortical protein anchoring), GO:0046872 (metal ion binding)
Niben101Scf08814g00007.1	emb|CDX99259.1|	***-	BnaC05g33740D [Brassica napus]		
Niben101Scf12762g00006.1	sp|Q65WT0|BD31B_ORYSJ	***-	Protein BUD31 homolog 2	IPR001748 (G10 protein)	GO:0005634 (nucleus)
Niben101Scf00926g01011.1	sp|O48651|ERG1_PANGI	****	Squalene monooxygenase	IPR003042 (Aromatic-ring hydroxylase-like)	GO:0004506 (squalene monooxygenase activity), GO:0008152 (metabolic process), GO:0016021 (integral component of membrane), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00854g10005.1			Unknown protein		
Niben101Scf02455g01010.1	AT1G15730.1	***-	Cobalamin biosynthesis CobW-like protein LENGTH=448	IPR003495 (CobW/HypB/UreG domain), IPR011629 (Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01090g05008.1	sp|P0CR79|HSE1_CRYNB	*-*-	Class E vacuolar protein-sorting machinery protein HSE1	IPR008942 (ENTH/VHS)	GO:0006886 (intracellular protein transport)
Niben101Scf00317g11018.1	emb|CDY10425.1|	*-*-	BnaCnng03260D [Brassica napus]		
Niben101Scf02585g00029.1	gb|KEH17617.1|	*-*-	structural constituent of cell wall protein, putative [Medicago truncatula]	IPR010820 (Protein of unknown function DUF1421)	
Niben101Scf13221g00007.1	AT4G31500.1	***-	cytochrome P450, family 83, subfamily B, polypeptide 1 LENGTH=499	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08960g00005.1	AT1G64600.1	****	methyltransferases;copper ion binding LENGTH=537	IPR007533 (Cytochrome c oxidase assembly protein CtaG/Cox11), IPR015324 (Ribosomal protein Rsm22, bacterial-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005507 (copper ion binding), GO:0006412 (translation), GO:0008168 (methyltransferase activity)
Niben101Scf11266g03004.1	gb|AEM24937.1|	*-*-	thionin-like protein [Nicotiana tabacum]		
Niben101Scf05201g05006.1	dbj|BAA13684.1|	*-*-	AR781 [Arabidopsis thaliana]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf03413g02017.1	gb|KEH37497.1|	*-*-	plant/F27B13-30 protein [Medicago truncatula]		
Niben101Scf02436g05001.1	gb|AES96559.2|	***-	BZIP transcription factor [Medicago truncatula]	IPR012458 (Protein of unknown function DUF1664)	
Niben101Scf05699g00009.1	gb|ACF19789.1|	*-**	NAC transcription factor [Nicotiana tabacum]	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf33400g00001.1	gb|ADV15959.1|	*-*-	maturase, partial (mitochondrion) [Montinia caryophyllacea]	IPR000477 (Reverse transcriptase domain)	
Niben101Scf00994g05008.1	AT2G33170.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf07987g01010.1			Unknown protein		
Niben101Scf11008g03003.1	AT1G51210.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=433	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01911g07001.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03227g03023.1	sp|B2S7M5|ATPA_BRUA1	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf06473g01004.1	sp|P33119|GALE_CORDI	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf01764g02017.1	sp|P23360|XYNA_THEAU	--*-	Endo-1,4-beta-xylanase	IPR017853 (Glycoside hydrolase superfamily)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf01664g02023.1	sp|P01122|RHO_APLCA	****	Ras-like GTP-binding protein RHO	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf01578g00003.1	AT4G16580.1	*-*-	Protein phosphatase 2C family protein LENGTH=467	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf13676g02010.1	sp|Q8VYT5|FB254_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf02868g03003.1	sp|Q5BKS4|ERI2_MOUSE	--*-	ERI1 exoribonuclease 2	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf03872g02001.1	AT1G72010.1	*-*-	TCP family transcription factor LENGTH=375	IPR005333 (Transcription factor, TCP)	
Niben101Scf07230g00001.1	sp|Q9ZSY8|IAA27_ARATH	***-	Auxin-responsive protein IAA27	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf01212g02012.1	sp|O22959|PER19_ARATH	****	Peroxidase 19	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07239g01005.1	gb|KEH43864.1|	*-*-	heat shock 22 kDa protein [Medicago truncatula]		
Niben101Ctg15064g00002.1	sp|Q9SYD6|MATE1_ARATH	***-	MATE efflux family protein 1	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02798g01006.1			Unknown protein		
Niben101Scf09709g00007.1	AT4G32870.1	***-	Polyketide cyclase/dehydrase and lipid transport superfamily protein LENGTH=157	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf07944g00005.1			Unknown protein		
Niben101Scf03107g00001.1	sp|Q9SA23|SYP51_ARATH	***-	Syntaxin-51	IPR000727 (Target SNARE coiled-coil domain)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane)
Niben101Scf09372g04008.1	sp|G2TRU5|COXM2_SCHPO	-**-	COX assembly mitochondrial protein 2	IPR013892 (Cytochrome c oxidase biogenesis protein Cmc1-like)	
Niben101Scf02929g05078.1	sp|Q8K4K7|ABRA_RAT	--*-	Actin-binding Rho-activating protein		
Niben101Scf01795g14001.1	sp|Q9LN01|PPR21_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04933g02001.1	AT5G56960.1	***-	basic helix-loop-helix (bHLH) DNA-binding family protein LENGTH=466		
Niben101Scf03714g02008.1	emb|CDY72374.1|	--*-	BnaAnng40900D [Brassica napus]		
Niben101Scf06514g02019.1	sp|Q8GZ13|BEE1_ARATH	--*-	Transcription factor BEE 1	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04781g00005.1	AT1G26920.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=173		
Niben101Scf02720g04008.1	ref|NP_197537.1|	--*-	serine-rich protein-like protein [Arabidopsis thaliana] gb|AED92836.1| serine-rich protein-like protein [Arabidopsis thaliana]		
Niben101Scf02080g03012.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf12751g00001.1	AT4G34280.1	*-*-	transducin family protein / WD-40 repeat family protein LENGTH=783	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01200g02006.1	sp|P14717|PAL1_ORYSJ	*-**	Phenylalanine ammonia-lyase	IPR001106 (Aromatic amino acid lyase), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf04547g01004.1	AT3G12600.1	****	nudix hydrolase homolog 16 LENGTH=180	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf13643g01009.1	emb|CDX97434.1|	*-*-	BnaC08g12990D [Brassica napus]		
Niben101Scf03802g00022.1	sp|O34392|YTRE_BACSU	*-**	ABC transporter ATP-binding protein YtrE	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf03196g00001.1	sp|Q4J8Q0|SYFB_SULAC	****	Phenylalanine--tRNA ligase beta subunit	IPR004531 (Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0003723 (RNA binding), GO:0004826 (phenylalanine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006432 (phenylalanyl-tRNA aminoacylation)
Niben101Scf09101g01003.1	sp|Q8LBW3|LBD12_ARATH	***-	LOB domain-containing protein 12	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf06815g01003.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07008g01012.1	AT1G61870.1	***-	pentatricopeptide repeat 336 LENGTH=408	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00046g09011.1	sp|Q5C8T6|TRIM5_GORGO	*-*-	Tripartite motif-containing protein 5	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf16716g00010.1	AT4G19420.1	*-*-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf07706g00022.1	sp|Q9LZC5|GDL73_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf23752g00006.1	gb|AES65883.2|	****	2-aminoethanethiol dioxygenase-like protein [Medicago truncatula]	IPR012864 (Cysteamine dioxygenase), IPR014710 (RmlC-like jelly roll fold)	GO:0047800 (cysteamine dioxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf33522g00001.1	sp|Q9SJB4|GDL34_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf07026g00017.1	sp|Q7SXL7|FL2D_DANRE	*-*-	Pre-mRNA-splicing regulator WTAP		
Niben101Scf09191g02003.1	sp|Q58DW6|RAB25_BOVIN	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf01993g05017.1	sp|P00054|CYC_SESIN	***-	Cytochrome c	IPR002327 (Cytochrome c, class IA/ IB), IPR009056 (Cytochrome c-like domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf16376g00002.1	sp|Q07346|DCE_PETHY	*-*-	Glutamate decarboxylase	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03392g08005.1	sp|A5YVF1|SGS3_SOLLC	****	Protein SUPPRESSOR OF GENE SILENCING 3	IPR005380 (XS domain), IPR005381 (Zinc finger-XS domain)	GO:0031047 (gene silencing by RNA)
Niben101Scf08947g01009.1	sp|Q8GWU0|PGP2_ARATH	****	Phosphoglycolate phosphatase 2	IPR006357 (HAD-superfamily hydrolase, subfamily IIA), IPR023214 (HAD-like domain), IPR023215 (Nitrophenylphosphatase-like  domain)	GO:0008152 (metabolic process), GO:0016791 (phosphatase activity)
Niben101Scf05299g00008.1	AT1G65800.1	*-**	receptor kinase 2 LENGTH=847	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00698g00008.1	sp|P56986|GALE_NEIMC	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005886 (UDP-glucose 4-epimerase GalE), IPR025308 (UDP-glucose 4-epimerase C-terminal domain)	GO:0003824 (catalytic activity), GO:0003978 (UDP-glucose 4-epimerase activity), GO:0006012 (galactose metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf00410g01018.1	AT4G23930.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=187	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf00963g01002.1	sp|Q9ASR4|BCAL2_ARATH	*-*-	Branched-chain-amino-acid aminotransferase-like protein 2	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01453g06003.1	sp|Q96520|PER12_ARATH	****	Peroxidase 12	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01290g01033.1	sp|Q6X4A2|CIPKV_ORYSJ	****	CBL-interacting protein kinase 31	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02508g07016.1	sp|F4IXJ7|MED6_ARATH	*-**	Mediator of RNA polymerase II transcription subunit 6	IPR007018 (Mediator complex, subunit Med6)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf09392g00008.1	sp|Q62848|ARFG1_RAT	*-**	ADP-ribosylation factor GTPase-activating protein 1	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf16378g01013.1			Unknown protein		
Niben101Scf02517g06004.1	sp|P53756|PDR18_YEAST	*-**	ABC transporter ATP-binding protein/permease PDR18	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf04384g00021.1			Unknown protein		
Niben101Scf05997g00006.1	sp|Q9AWM9|RPF2_ORYSJ	***-	Ribosome production factor 2 homolog	IPR007109 (Brix domain)	
Niben101Scf16416g02012.1	sp|Q9U7D0|H4_MASBA	*-*-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly), GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity)
Niben101Scf00321g05001.1	AT5G55390.1	*-*-	ENHANCED DOWNY MILDEW 2 LENGTH=1297	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022702 (DNA (cytosine-5)-methyltransferase 1, replication foci domain)	
Niben101Scf09510g01005.1	AT1G17580.1	****	myosin 1 LENGTH=1520	IPR000048 (IQ motif, EF-hand binding site), IPR002710 (Dilute), IPR004009 (Myosin, N-terminal, SH3-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Ctg13930g00002.1	sp|Q8LFT2|DRP3B_ARATH	*-*-	Dynamin-related protein 3B	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf02030g05008.1	sp|P81395|MYB30_ANTMA	*-*-	Myb-related protein 330	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01740g08004.1	sp|P47134|BIR1_YEAST	--*-	Protein BIR1		
Niben101Scf05385g04012.1			Unknown protein		
Niben101Ctg09256g00003.1			Unknown protein		
Niben101Scf01982g03006.1	sp|A4ZGQ8|HMT1_BRAOT	****	Homocysteine S-methyltransferase 1	IPR003726 (Homocysteine S-methyltransferase)	GO:0008898 (S-adenosylmethionine-homocysteine S-methyltransferase activity)
Niben101Scf03860g05002.1	sp|O80434|LAC4_ARATH	***-	Laccase-4	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00821g02001.1	sp|Q94JW8|SPL6_ARATH	*-**	Squamosa promoter-binding-like protein 6	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf01401g00001.1	ref|NP_191672.1|	****	alpha-1,4-galacturon [Arabidopsis thaliana] emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gb|AHL38722.1| glycosyltransferase, partial [Arabidopsis thaliana]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf06436g00005.1	AT3G61050.1	*-*-	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=510		
Niben101Scf06734g01023.1	sp|O80931|AS1_ARATH	*-*-	Transcription factor AS1	IPR009057 (Homeodomain-like)	
Niben101Scf00449g01015.1	sp|Q921M3|SF3B3_MOUSE	***-	Splicing factor 3B subunit 3	IPR004871 (Cleavage/polyadenylation specificity factor, A subunit, C-terminal), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf04871g13001.1	AT1G01500.1	***-	Erythronate-4-phosphate dehydrogenase family protein LENGTH=327		
Niben101Scf02264g05016.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05437g04015.1	sp|Q9SB67|NRT32_ARATH	****	High-affinity nitrate transporter 3.2	IPR016605 (High-affinity nitrate transporter)	GO:0010167 (response to nitrate), GO:0015706 (nitrate transport)
Niben101Scf08483g00010.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf01970g01012.1	sp|Q7NCC0|RS18_GLOVI	*-*-	30S ribosomal protein S18	IPR001648 (Ribosomal protein S18)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf12305g00012.1	sp|Q9T096|YIPL6_ARATH	***-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf02078g06003.1	AT1G26540.1	*-*-	Agenet domain-containing protein LENGTH=695	IPR007930 (Protein of unknown function DUF724), IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf03989g02016.1	sp|P53494|ACT4_ARATH	*-*-	Actin-4	IPR004000 (Actin family)	
Niben101Scf08008g01001.1	gb|KEH39432.1|	*-*-	GTP-binding protein Obg/CgtA protein [Medicago truncatula]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf01998g05003.1	sp|Q8L9S3|GRXC6_ARATH	***-	Glutaredoxin-C6	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02569g00004.1	ref|XP_002535344.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF27039.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00328g00001.1	sp|Q58DH7|SGMR1_BOVIN	--*-	Sigma non-opioid intracellular receptor 1	IPR006716 (ERG2/sigma1 receptor-like)	GO:0006869 (lipid transport)
Niben101Scf00988g00002.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01212g01017.1	sp|A4QLH5|PSBA_LOBMA	****	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf01834g02012.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf01319g01003.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf01046g02014.1	sp|Q9M0N8|MZT1B_ARATH	***-	Mitotic-spindle organizing protein 1B	IPR022214 (Protein of unknown function DUF3743)	
Niben101Scf06413g00005.1	emb|CDX85501.1|	***-	BnaA02g03120D [Brassica napus]		
Niben101Scf04742g01006.1	sp|Q84MB3|ACCH1_ARATH	*-*-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf04786g01003.1	ref|XP_007011833.1|	***-	My isoform 2 [Theobroma cacao]		
Niben101Scf02353g06029.1	ref|XP_007013597.1|	***-	MuDR family transposase, putative isoform 2 [Theobroma cacao] gb|EOY31216.1| MuDR family transposase, putative isoform 2 [Theobroma cacao]	IPR000270 (Phox/Bem1p), IPR004332 (Transposase, MuDR, plant), IPR007527 (Zinc finger, SWIM-type), IPR018289 (MULE transposase domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02913g00012.1	AT5G08570.1	****	Pyruvate kinase family protein LENGTH=510	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf03584g00005.1	emb|CDX72303.1|	***-	BnaC07g43250D [Brassica napus]	IPR006747 (Protein of unknown function DUF599)	
Niben101Scf09708g00005.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03659g08007.1	ref|NP_565431.1|	*-**	protein RER1D [Arabidopsis thaliana] RecName: Full=Protein RER1D; Short=AtRER1D [Arabidopsis thaliana] gb|AAD15512.2| putative integral membrane protein [Arabidopsis thaliana] dbj|BAC43104.1| putative integral membrane protein [Arabidopsis thaliana] dbj|BAF00357.1| putative integral membrane protein [Arabidopsis thaliana] gb|ABN04801.1| [Arabidopsis thaliana] gb|AEC06743.1| protein RER1D [Arabidopsis thaliana]	IPR004932 (Retrieval of early ER protein Rer1)	GO:0016021 (integral component of membrane)
Niben101Scf06466g00008.1	AT3G19540.1	***-	Protein of unknown function (DUF620) LENGTH=485	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf00845g00003.1	AT5G09890.2	*-**	Protein kinase family protein LENGTH=516	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04406g06012.1	emb|CDY23728.1|	***-	BnaC04g43940D [Brassica napus]	IPR001202 (WW domain)	GO:0005515 (protein binding)
Niben101Scf04554g07007.1	ref|XP_002527980.1|	*-*-	transcription factor, putative [Ricinus communis] gb|EEF34392.1| transcription factor, putative [Ricinus communis]		
Niben101Scf03541g00016.1	sp|Q9FJJ4|FB298_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05929g03003.1	AT2G33320.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=602	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00444g01002.1	sp|Q8N9B4|ANR42_HUMAN	*-*-	Ankyrin repeat domain-containing protein 42	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01241g03005.1	AT1G09290.1	***-	unknown protein; Has 73 Blast hits to 71 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 11; Plants - 54; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). LENGTH=348	IPR004114 (THUMP)	GO:0003723 (RNA binding)
Niben101Scf02395g03005.1	gb|AAB40608.1|	*-*-	glutamate decarboxylase [Nicotiana tabacum]		
Niben101Scf02482g02005.1	sp|Q01593|ABI3_ARATH	*-*-	B3 domain-containing transcription factor ABI3	IPR011124 (Zinc finger, CW-type), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf05892g00006.1	sp|P84227|H32_BOVIN	***-	Histone H3.2	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf00961g04004.1	sp|A1L4Y2|ADHL3_ARATH	*-*-	Alcohol dehydrogenase-like 3	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01594g06002.1	sp|B3M6C8|COQ4_DROAN	--*-	Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial		
Niben101Scf02285g01005.1	emb|CDX89403.1|	***-	BnaA01g14900D [Brassica napus]		
Niben101Scf05811g02026.1	emb|CDX68815.1|	*-*-	BnaC01g06380D [Brassica napus]		
Niben101Scf00259g00002.1	AT3G57280.1	*-*-	Transmembrane proteins 14C LENGTH=226	IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane)
Niben101Scf00326g01005.1	emb|CDY34463.1|	-**-	BnaC01g21700D [Brassica napus]		
Niben101Scf00206g00033.1	sp|O82204|RL281_ARATH	***-	60S ribosomal protein L28-1	IPR002672 (Ribosomal protein L28e), IPR029004 (Ribosomal L28e/Mak16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01599g02008.1	sp|Q940G0|TMN1_ARATH	***-	Transmembrane 9 superfamily member 1	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf04283g00005.1	AT2G48160.1	*-*-	Tudor/PWWP/MBT domain-containing protein LENGTH=1366		
Niben101Scf02353g02004.1	sp|Q4KTE2|RSSA_SUBDO	****	40S ribosomal protein SA	IPR001865 (Ribosomal protein S2), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf03964g00004.1	AT4G30420.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=373	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf09696g00027.1	sp|P12786|COX1_PEA	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg16306g00002.1	sp|Q7XSK0|BGL18_ORYSJ	***-	Beta-glucosidase 18	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07883g07003.1	sp|Q8LPR5|TCP4_ARATH	*-*-	Transcription factor TCP4	IPR005333 (Transcription factor, TCP)	
Niben101Scf09696g01077.1	AT2G07772.1	*-*-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=179		
Niben101Scf01078g00024.1	sp|Q6FR76|UBC2_CANGA	***-	Ubiquitin-conjugating enzyme E2 2	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR027230 (SUMO-conjugating enzyme Ubc9)	GO:0019789 (SUMO transferase activity)
Niben101Scf08308g01006.1	sp|Q84MA2|IP5P1_ARATH	***-	Type I inositol 1,4,5-trisphosphate 5-phosphatase 1	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf00338g09019.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03257g02001.1	gb|ACG38839.1|	***-	snRK1-interacting protein 1 [Zea mays]		
Niben101Scf03085g07014.1	sp|Q54Q31|PHB2_DICDI	***-	Prohibitin-2	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf01857g01001.1	gb|AGT97382.1|	***-	EG5651 [Manihot esculenta]		
Niben101Scf01326g09002.1	sp|Q96SZ5|AEDO_HUMAN	****	2-aminoethanethiol dioxygenase	IPR012864 (Cysteamine dioxygenase), IPR014710 (RmlC-like jelly roll fold)	GO:0047800 (cysteamine dioxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf13399g00004.1			Unknown protein		
Niben101Scf06552g01006.1	AT4G08685.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=159	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf02319g06001.1	sp|Q9LFC5|PP360_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02648g02004.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05928g01003.1	sp|Q9FLQ7|FH20_ARATH	*-*-	Formin-like protein 20	IPR000008 (C2 domain), IPR015425 (Formin, FH2 domain), IPR027643 (Formin-like family, plant), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0005515 (protein binding), GO:0005884 (actin filament), GO:0045010 (actin nucleation)
Niben101Scf00522g01020.1	sp|Q9Y5Q9|TF3C3_HUMAN	*-*-	General transcription factor 3C polypeptide 3	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03790g00002.1	emb|CDX68674.1|	***-	BnaC01g07790D [Brassica napus]		
Niben101Scf00603g08013.1	sp|P51106|DFRA_HORVU	***-	Dihydroflavonol-4-reductase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf10431g00033.1	sp|A8K979|ERI2_HUMAN	*-*-	ERI1 exoribonuclease 2	IPR010666 (Zinc finger, GRF-type), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity), GO:0008270 (zinc ion binding)
Niben101Scf02903g01005.1	ref|XP_007012652.1|	*-*-	Ankyrin repeat-containing-like protein [Theobroma cacao] gb|EOY30271.1| Ankyrin repeat-containing-like protein [Theobroma cacao]	IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	
Niben101Scf05177g03014.1			Unknown protein		
Niben101Scf01433g04003.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf01620g02005.1	sp|Q9ZV31|PUB12_ARATH	*-*-	U-box domain-containing protein 12	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02399g05007.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf03673g03006.1	sp|O48837|LRKS2_ARATH	--*-	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0005524 (ATP binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05767g00007.1	AT5G52390.1	***-	PAR1 protein LENGTH=195	IPR009489 (PAR1)	
Niben101Scf10608g01006.1	sp|O04659|PP398_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02336g02010.1			Unknown protein		
Niben101Scf00990g01003.1	sp|Q8VZU9|DERL1_ARATH	*-*-	Derlin-1	IPR007599 (Derlin), IPR018609 (Bud13)	
Niben101Scf02085g13001.1	AT5G02180.1	*-*-	Transmembrane amino acid transporter family protein LENGTH=550	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf05146g06007.1	sp|Q7XSA2|AGO1B_ORYSJ	***-	Protein argonaute 1B	IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785), IPR024357 (Argonaut, glycine-rich domain)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf03878g03001.1	sp|F4HXV6|NU155_ARATH	****	Nuclear pore complex protein NUP155	IPR004870 (Nucleoporin, Nup155-like)	GO:0005643 (nuclear pore), GO:0006913 (nucleocytoplasmic transport), GO:0017056 (structural constituent of nuclear pore)
Niben101Scf11737g00022.1	sp|Q9Z1S0|BUB1B_MOUSE	*-*-	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	IPR015661 (Mitotic checkpoint serine/threonine protein kinase Bub1/Mitotic spindle checkpoint component Mad3)	
Niben101Scf00215g10001.1	ref|XP_002862932.1|	***-	oxidoreductase/ transition metal ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH39191.1| oxidoreductase/ transition metal ion binding protein [Arabidopsis lyrata subsp. lyrata]		
Niben101Scf04504g03008.1	sp|P27489|CB23_SOLLC	***-	Chlorophyll a-b binding protein 13, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf11724g00004.1	sp|A6MZM2|SUI1_ORYSI	****	Protein translation factor SUI1 homolog	IPR005874 (Eukaryotic translation initiation factor SUI1)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf04141g01004.1	emb|CDY48301.1|	***-	BnaC05g13550D [Brassica napus]		
Niben101Scf00736g04007.1			Unknown protein		
Niben101Scf19423g00008.1	sp|A4QJI0|PSBA_AETGR	****	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf02824g02009.1	sp|Q9SXD8|PPR90_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00589g01004.1			Unknown protein		
Niben101Scf01006g03017.1	sp|Q93ZR6|WSD1_ARATH	****	O-acyltransferase WSD1	IPR004255 (O-acyltransferase, WSD1, N-terminal), IPR009721 (O-acyltransferase, WSD1, C-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity), GO:0045017 (glycerolipid biosynthetic process)
Niben101Scf02017g03004.1	sp|O04479|LBD6_ARATH	***-	LOB domain-containing protein 6	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf11009g00008.1	sp|A2BN38|RS12_HYPBU	****	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf01078g00023.1	AT5G63050.1	***-	embryo defective 2759 LENGTH=345		
Niben101Scf02253g06001.1	ref|NP_001288856.1|	****	mitochondrial outer membrane protein porin 3-like [Brassica rapa] gb|AAS21632.1| voltage-dependent anion-selective channel protein [Brassica rapa]	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0006820 (anion transport), GO:0008308 (voltage-gated anion channel activity), GO:0044070 (regulation of anion transport), GO:0055085 (transmembrane transport)
Niben101Scf13000g02004.1	AT4G29660.1	***-	embryo defective 2752 LENGTH=103		
Niben101Scf00611g09002.1	ref|WP_017941821.1|	***-	MULTISPECIES: hypothetical protein [Thioalkalivibrio]	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf02793g22001.1	gb|AAW28576.2|	--*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf11483g00012.1	AT1G04140.2	*-*-	Transducin family protein / WD-40 repeat family protein LENGTH=793	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01507g01017.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07231g00016.1	AT3G47490.1	****	HNH endonuclease LENGTH=234	IPR002711 (HNH endonuclease)	GO:0003676 (nucleic acid binding), GO:0004519 (endonuclease activity)
Niben101Scf00927g06002.1	emb|CAE04628.3|	--*-	OSJNBa0028I23.10 [Oryza sativa Japonica Group]		
Niben101Scf04077g04007.1	AT1G31480.1	*-*-	shoot gravitropism 2 (SGR2) LENGTH=933		
Niben101Scf09846g01009.1	gb|AAG53944.1|	****	quinone-oxidoreductase QR1 [Triphysaria versicolor]	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06013g00008.1	ref|WP_029843959.1|	*-**	peptidase M16 [Vibrio parahaemolyticus]	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0046872 (metal ion binding)
Niben101Scf03652g03002.1	sp|A4WIZ3|RS19_PYRAR	****	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf04024g00021.1	AT3G18210.1	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=394	IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03121g04009.1	sp|Q91Z53|GRHPR_MOUSE	****	Glyoxylate reductase/hydroxypyruvate reductase	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05688g11002.1	AT1G16330.1	*-*-	cyclin b3;1 LENGTH=648	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf02668g00017.1	sp|Q03YL0|GPDA_LEUMM	-***	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	IPR006168 (Glycerol-3-phosphate dehydrogenase, NAD-dependent), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004367 (glycerol-3-phosphate dehydrogenase [NAD+] activity), GO:0005975 (carbohydrate metabolic process), GO:0006072 (glycerol-3-phosphate metabolic process), GO:0009331 (glycerol-3-phosphate dehydrogenase complex), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04700g02001.1	sp|Q9LPM9|BCAT6_ARATH	*-*-	Branched-chain-amino-acid aminotransferase 6	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf06374g00017.1	sp|Q553X7|GALE_DICDI	*-**	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005886 (UDP-glucose 4-epimerase GalE)	GO:0003824 (catalytic activity), GO:0003978 (UDP-glucose 4-epimerase activity), GO:0006012 (galactose metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf10124g01002.1	sp|Q93WC4|IAA29_ARATH	***-	Auxin-responsive protein IAA29	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Ctg14464g00004.1	sp|O00567|NOP56_HUMAN	***-	Nucleolar protein 56	IPR002687 (Nop domain), IPR012976 (NOSIC)	
Niben101Scf07643g00004.1	ref|XP_007040750.1|	--*-	Zinc ion binding,nucleic acid binding-like protein [Theobroma cacao] gb|EOY25251.1| Zinc ion binding,nucleic acid binding-like protein [Theobroma cacao]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf03385g00005.1	sp|Q7XR61|MTK1_ORYSJ	****	Methylthioribose kinase 1	IPR009212 (Methylthioribose kinase), IPR011009 (Protein kinase-like domain)	GO:0009086 (methionine biosynthetic process), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0046522 (S-methyl-5-thioribose kinase activity)
Niben101Scf04444g02003.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01785g00006.1			Unknown protein		
Niben101Scf00975g00008.1	sp|Q32HA3|ZNUC_SHIDS	****	Zinc import ATP-binding protein ZnuC	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf02278g01002.1	emb|CDY42275.1|	***-	BnaC02g08810D [Brassica napus]		
Niben101Scf06788g00014.1			Unknown protein		
Niben101Scf00163g08007.1	sp|Q40089|ATP4_IPOBA	*-*-	ATP synthase subunit delta', mitochondrial		
Niben101Scf06081g03019.1			Unknown protein		
Niben101Scf34955g00001.1			Unknown protein		
Niben101Ctg09012g00002.1	sp|Q9SR02|MED14_ARATH	*-*-	Mediator of RNA polymerase II transcription subunit 14		
Niben101Scf02182g18008.1	sp|O82528|RL15_PETHY	***-	60S ribosomal protein L15	IPR000439 (Ribosomal protein L15e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00257g02002.1	sp|Q7TQK5|CCD93_MOUSE	--*-	Coiled-coil domain-containing protein 93		
Niben101Scf04921g01017.1	ref|WP_005337532.1|	--*-	recombinase [Dorea formicigenerans] gb|EGX77028.1| hypothetical protein HMPREF9457_00810 [Dorea formicigenerans 4_6_53AFAA]		
Niben101Scf06348g00036.1	AT3G16857.2	*-*-	response regulator 1 LENGTH=690	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08472g02001.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf09813g00006.1	sp|Q9SI78|PPR93_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02835g00007.1	emb|CDY58995.1|	***-	BnaC08g49480D [Brassica napus]	IPR008511 (Protein BYPASS-related)	
Niben101Scf00854g03009.1	gb|AIG89919.1|	***-	succinate dehydrogenase subunit 3 (mitochondrion) [Capsicum annuum]		
Niben101Scf00047g03014.1	AT1G05510.1	***-	Protein of unknown function (DUF1264) LENGTH=241	IPR010686 (Protein of unknown function DUF1264)	
Niben101Scf01209g07017.1	sp|Q67IP2|RR7_BUTUM	*-**	30S ribosomal protein S7, chloroplastic	IPR006032 (Ribosomal protein S12/S23), IPR023798 (Ribosomal protein S7 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf29810g00005.1			Unknown protein		
Niben101Scf00863g07022.1	sp|Q2R4J4|C3H63_ORYSJ	*-*-	Zinc finger CCCH domain-containing protein 63	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf10968g00003.1	sp|F4IHS2|SYD_ARATH	*-*-	Chromatin structure-remodeling complex protein SYD	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf02989g01027.1	AT3G47833.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=93		
Niben101Scf01653g02020.1	AT2G37730.1	***-	Protein of unknown function (DUF604) LENGTH=532	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf01189g02019.1	sp|Q9SVM0|Y3078_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold)	
Niben101Scf02261g00009.1	AT5G07990.1	*-*-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02549g03010.1	sp|Q9ZUM0|C3H17_ARATH	***-	Zinc finger CCCH domain-containing protein 17	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf06442g00015.1	sp|Q80XC2|TRM61_MOUSE	****	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A	IPR014816 (tRNA (1-methyladenosine) methyltransferase catalytic subunit Gcd14), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0016429 (tRNA (adenine-N1-)-methyltransferase activity), GO:0030488 (tRNA methylation), GO:0031515 (tRNA (m1A) methyltransferase complex)
Niben101Scf04068g00003.1	AT1G58100.1	***-	TCP family transcription factor LENGTH=401	IPR005333 (Transcription factor, TCP)	
Niben101Scf00152g25014.1	sp|Q75JG8|DPH5_DICDI	****	Diphthine synthase	IPR000878 (Tetrapyrrole methylase), IPR004551 (Diphthine synthase)	GO:0004164 (diphthine synthase activity), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity), GO:0017183 (peptidyl-diphthamide biosynthetic process from peptidyl-histidine)
Niben101Scf01012g01020.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf03988g00003.1	sp|Q0WKZ3|PP105_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04703g11016.1	sp|Q5EAR5|TRPT1_DANRE	****	tRNA 2'-phosphotransferase 1	IPR002745 (Phosphotransferase KptA/Tpt1)	GO:0006388 (tRNA splicing, via endonucleolytic cleavage and ligation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf34081g00020.1	sp|Q8VZA1|LAC11_ARATH	***-	Laccase-11	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02992g03026.1	AT5G10470.2	*-*-	kinesin like protein for actin based chloroplast movement 1 LENGTH=1274		
Niben101Scf11159g00004.1	gb|ADQ28399.1|	*-*-	transport membrane protein, partial (mitochondrion) [Butomus umbellatus]		
Niben101Ctg00286g00001.1	gb|KEH20568.1|	*-*-	mannosyl-oligosaccharide glucosidase [Medicago truncatula]		
Niben101Scf02969g00004.1	sp|Q9FIX3|PP407_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04206g01011.1	sp|Q5B4C9|ATG26_EMENI	*-*-	Sterol 3-beta-glucosyltransferase	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase), IPR004276 (Glycosyltransferase family 28, N-terminal domain)	GO:0005975 (carbohydrate metabolic process), GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups), GO:0030259 (lipid glycosylation)
Niben101Scf16506g00004.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11251g00003.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00152g13012.1			Unknown protein		
Niben101Scf04300g01007.1			Unknown protein		
Niben101Scf11191g00009.1	sp|Q88U22|PUR7_LACPL	--*-	Phosphoribosylaminoimidazole-succinocarboxamide synthase		
Niben101Scf21334g00008.1	sp|Q9FNP2|GDL75_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf08667g00009.1	sp|O14647|CHD2_HUMAN	*-*-	Chromodomain-helicase-DNA-binding protein 2	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03823g00006.1	sp|B8H554|RS9_CAUCN	***-	30S ribosomal protein S9	IPR000754 (Ribosomal protein S9), IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01338g02005.1	sp|Q5EA37|CC130_BOVIN	***-	Coiled-coil domain-containing protein 130	IPR007590 (CWC16 protein)	
Niben101Scf07508g08003.1	gb|KEH33317.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf03314g00004.1	sp|O80341|EF102_ARATH	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00960g09003.1	sp|O49884|RL30_LUPLU	***-	60S ribosomal protein L30	IPR000231 (Ribosomal protein L30e), IPR022991 (Ribosomal protein L30e, conserved site), IPR029064 (50S ribosomal protein L30e-like)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05231g01011.1	AT3G06930.2	****	protein arginine methyltransferase 4B LENGTH=535	IPR025799 (Protein arginine N-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006479 (protein methylation), GO:0008168 (methyltransferase activity)
Niben101Scf03998g00002.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf05997g00007.1	AT4G28540.1	****	casein kinase I-like 6 LENGTH=479	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03766g08017.1	AT3G27440.1	****	uridine kinase-like 5 LENGTH=465	IPR000764 (Uridine kinase like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029057 (Phosphoribosyltransferase-like)	GO:0004849 (uridine kinase activity), GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0044206 (UMP salvage)
Niben101Scf11071g00001.1	ref|WP_015138847.1|	--*-	integral membrane protein [N [Nostoc sp. PCC 7524]	IPR019275 (Protein of unknown function DUF2301)	
Niben101Scf14714g00016.1	ref|XP_007015233.1|	***-	Methyltransferase family protein isoform 1 [Theobroma cacao] gb|EOY32852.1| Methyltransferase family protein isoform 1 [Theobroma cacao]		
Niben101Scf18306g00017.1	AT5G55600.1	***-	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein LENGTH=663	IPR001025 (Bromo adjacent homology (BAH) domain), IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	GO:0003682 (chromatin binding)
Niben101Scf04876g01001.1			Unknown protein		
Niben101Scf17730g00015.1	sp|O70133|DHX9_MOUSE	*-**	ATP-dependent RNA helicase A	IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR020683 (Ankyrin repeat-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004386 (helicase activity)
Niben101Scf04090g02005.1			Unknown protein		
Niben101Scf00794g00012.1	gb|ABI34321.1|	--*-	RNase H family protein [Solanum demissum]		
Niben101Scf01063g11008.1	ref|NP_001190855.1|	*-*-	vacuolar iron transporter-like protein [Arabidopsis thaliana] gb|AEE85402.1| vacuolar iron transporter-like protein [Arabidopsis thaliana]	IPR008217 (Ccc1 family)	
Niben101Scf02300g00025.1	AT2G30500.1	*-*-	Kinase interacting (KIP1-like) family protein LENGTH=517		
Niben101Scf05109g02009.1	AT5G17880.1	*-*-	disease resistance protein (TIR-NBS-LRR class) LENGTH=1197	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02315g00012.1	sp|Q8LJT8|TKI1_ARATH	***-	TSL-kinase interacting protein 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02852g00012.1	gb|ACQ59171.1|	***-	potyviral VPg interacting protein 2 [Phaseolus vulgaris]	IPR004082 (Protein OBERON), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01438g02010.1	sp|Q7JK24|B3GT1_GORGO	--**	Beta-1,3-galactosyltransferase 1	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf00854g06030.1	sp|Q98864|PTC1_DANRE	--*-	Protein patched homolog 1		
Niben101Scf33522g00002.1	sp|Q04493|PFD5_YEAST	***-	Prefoldin subunit 5	IPR009053 (Prefoldin)	
Niben101Scf01692g03007.1	sp|O80341|EF102_ARATH	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf15416g00005.1	AT3G56240.1	*-*-	copper chaperone LENGTH=121	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf01842g01006.1	sp|Q8S340|PPA22_ARATH	****	Purple acid phosphatase 22	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf00397g08002.1	sp|Q9LUE2|TPS18_ARATH	****	Terpenoid synthase 18	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf04388g00011.1	sp|O50314|BCHH_CHLP8	****	Magnesium-chelatase subunit H	IPR003672 (CobN/magnesium chelatase)	GO:0009058 (biosynthetic process), GO:0015995 (chlorophyll biosynthetic process), GO:0016851 (magnesium chelatase activity)
Niben101Scf14206g00007.1	sp|Q9LQR0|LBD1_ARATH	***-	LOB domain-containing protein 1	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf07741g04002.1	sp|Q6PML9|ZNT9_HUMAN	****	Zinc transporter 9	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03045g04006.1	ref|WP_030392508.1|	--*-	heat shock protein hspR [Streptomyces purpeofuscus]		
Niben101Scf02509g04003.1	emb|CDX78062.1|	***-	BnaA09g32570D [Brassica napus]		
Niben101Scf00069g12023.1	ref|XP_002527227.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35153.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00367g07005.1	ref|XP_002521496.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF40885.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04503g03006.1	ref|XP_007033416.1|	-**-	Late embryogenesis abundant protein family protein [Theobroma cacao] gb|EOY04342.1| Late embryogenesis abundant protein family protein [Theobroma cacao]		
Niben101Scf08801g00006.1	sp|P83218|PME_DAUCA	--**	Pectinesterase	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf00797g09003.1	gb|ACM68460.1|	***-	stress-associated protein 10 [Solanum pennellii]		
Niben101Scf00468g00006.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02156g11002.1	sp|Q27RY7|YCF2_SOLTU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf04621g00002.1	ref|XP_007010078.1|	*-*-	F-box and Leucine Rich Repeat domains containing protein, putative isoform 3, partial [Theobroma cacao] gb|EOY18888.1| F-box and Leucine Rich Repeat domains containing protein, putative isoform 3, partial [Theobroma cacao]		
Niben101Scf06172g02018.1	sp|Q9GKX6|GALM_PIG	*-*-	Aldose 1-epimerase	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf12885g02015.1	sp|Q04739|GAL83_YEAST	--*-	SNF1 protein kinase subunit beta-3	IPR006828 (Association with the SNF1 complex (ASC) domain), IPR014756 (Immunoglobulin E-set), IPR030070 (SNF1-related protein kinase regulatory subunit beta-2)	GO:0005515 (protein binding)
Niben101Scf01863g03008.1	sp|Q8RQD1|GLND_AZOBR	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf01694g05001.1	sp|Q7S7Z6|PPIB_NEUCR	****	Peptidyl-prolyl cis-trans isomerase B	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf02475g08017.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf14136g00007.1	AT1G27090.1	***-	glycine-rich protein LENGTH=420		
Niben101Scf07987g01011.1	ref|XP_003588403.1|	--*-	S1 ribosomal protein [Medicago truncatula]		
Niben101Scf01694g04001.1	sp|O80877|EF4L1_ARATH	***-	Protein ELF4-LIKE 1	IPR009741 (Protein of unknown function DUF1313)	
Niben101Scf08410g00001.1	sp|Q8S8V2|YCF2A_ATRBE	*-*-	Protein Ycf2 A		
Niben101Scf00339g04001.1	AT5G39990.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=447	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf05151g03009.1	AT1G80270.1	***-	PENTATRICOPEPTIDE REPEAT 596 LENGTH=596	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01498g02011.1	sp|O49399|PP321_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01406g02006.1	sp|Q9STF0|LRKS3_ARATH	****	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11246g00001.1			Unknown protein		
Niben101Scf05886g00005.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf22367g00001.1	AT1G28420.1	*-*-	homeobox-1 LENGTH=1705	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf15972g02017.1	sp|A5VSE2|ATPG_BRUO2	****	ATP synthase gamma chain	IPR000131 (ATPase, F1 complex, gamma subunit), IPR023632 (ATPase, F1 complex, gamma subunit conserved site), IPR023633 (ATPase, F1 complex, gamma subunit domain)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf02080g02004.1	gb|AES74971.2|	***-	membrane protein [Medicago truncatula]	IPR018710 (Protein of unknown function DUF2232)	
Niben101Scf25562g00010.1			Unknown protein	IPR010851 (S locus-related glycoprotein 1 binding pollen coat)	
Niben101Scf00558g00007.1	sp|Q06RC8|YCF3_JASNU	***-	Photosystem I assembly protein Ycf3	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01289g06007.1	sp|Q9P383|NCBP2_SCHPO	*-**	Nuclear cap-binding protein subunit 2	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR027157 (Nuclear cap-binding protein subunit 2)	GO:0000166 (nucleotide binding), GO:0000339 (RNA cap binding), GO:0003676 (nucleic acid binding), GO:0005846 (nuclear cap binding complex), GO:0045292 (mRNA cis splicing, via spliceosome)
Niben101Scf00161g00012.1	sp|P21882|ODPB_BACSU	*-**	Pyruvate dehydrogenase E1 component subunit beta	IPR005476 (Transketolase, C-terminal), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR027110 (Pyruvate dehydrogenase E1 component subunit beta)	GO:0003824 (catalytic activity), GO:0004739 (pyruvate dehydrogenase (acetyl-transferring) activity), GO:0006086 (acetyl-CoA biosynthetic process from pyruvate), GO:0008152 (metabolic process)
Niben101Scf05519g02004.1	gb|AAM18178.1|	***-	anther protein [Nicotiana tabacum]		
Niben101Scf03961g00003.1	sp|P27492|CB21_TOBAC	***-	Chlorophyll a-b binding protein 16, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf02541g09007.1	emb|CDY60908.1|	*-*-	BnaCnng37080D [Brassica napus]		
Niben101Scf10881g00017.1			Unknown protein		
Niben101Scf06754g04003.1	AT3G30280.1	****	HXXXD-type acyl-transferase family protein LENGTH=443	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf14799g00018.1	emb|CDX85262.1|	*-*-	BnaC07g25730D [Brassica napus]		
Niben101Scf00457g07014.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02738g06007.1	sp|Q9FJJ4|FB298_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf04813g01007.1	AT2G45460.3	***-	SMAD/FHA domain-containing protein LENGTH=916	IPR000580 (TSC-22 / Dip / Bun), IPR008984 (SMAD/FHA domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03445g01004.1	sp|P55200|KMT2A_MOUSE	*-*-	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR003616 (Post-SET domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02502g08006.1	sp|Q96NW4|ANR27_HUMAN	*-*-	Ankyrin repeat domain-containing protein 27	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf04481g00028.1	sp|O49621|MLO1_ARATH	*-*-	MLO-like protein 1	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf04318g03001.1			Unknown protein		
Niben101Scf09099g00030.1	AT2G21190.1	*-**	ER lumen protein retaining receptor family protein LENGTH=269	IPR000133 (ER lumen protein retaining receptor)	GO:0006621 (protein retention in ER lumen), GO:0016021 (integral component of membrane), GO:0046923 (ER retention sequence binding)
Niben101Scf21257g00021.1	AT1G49350.1	****	pfkB-like carbohydrate kinase family protein LENGTH=378	IPR002139 (Ribokinase), IPR029056 (Ribokinase-like)	GO:0004747 (ribokinase activity), GO:0006014 (D-ribose metabolic process)
Niben101Scf13823g03007.1	AT2G36870.1	****	xyloglucan endotransglucosylase/hydrolase 32 LENGTH=299	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf00024g04006.1	sp|P83970|PMA1_WHEAT	*-**	Plasma membrane ATPase	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023298 (P-type ATPase,  transmembrane domain), IPR023299 (P-type ATPase, cytoplasmic domain N)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf09998g01003.1	sp|Q9ZR37|DUS1_ARATH	*-**	Dual specificity protein phosphatase 1	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf02264g03021.1	ref|XP_007051794.1|	***-	Recombination initiation defects 3, putative isoform 1 [Theobroma cacao] ref|XP_007051797.1| Recombination initiation defects 3, putative isoform 1 [Theobroma cacao] gb|EOX95951.1| Recombination initiation defects 3, putative isoform 1 [Theobroma cacao] gb|EOX95954.1| Recombination initiation defects 3, putative isoform 1 [Theobroma cacao]		
Niben101Scf10810g00008.1	sp|Q89AF9|DEAD_BUCBP	****	ATP-dependent RNA helicase DeaD	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR025313 (Domain of unknown function DUF4217), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf09554g00007.1			Unknown protein		
Niben101Scf00069g11022.1	ref|NP_001046594.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf00034g00012.1	AT2G23620.1	***-	methyl esterase 1 LENGTH=263	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf14516g00019.1	sp|Q93VY3|NAC72_ARATH	***-	NAC domain-containing protein 72	IPR003441 (NAC domain)	
Niben101Scf12372g00004.1	sp|Q9FFD5|RIC4_ARATH	--*-	CRIB domain-containing protein RIC4	IPR000095 (CRIB domain)	
Niben101Scf00327g01033.1	gb|KEH36884.1|	*-*-	F-box plant-like protein, putative [Medicago truncatula]	IPR027949 (Petal formation-expressed)	
Niben101Scf03515g00069.1	sp|B3CT08|RL2_ORITI	*-*-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10974g01004.1	AT5G51790.1	****	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=204	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf07399g00029.1	gb|AES87033.2|	***-	DUF674 family protein [Medicago truncatula]	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf12983g00004.1	AT5G50740.3	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=290	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf01278g10001.1	sp|A4K2V0|TOM34_PONAB	*-*-	Mitochondrial import receptor subunit TOM34	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05506g02009.1	sp|Q8X9E6|AAEB_ECO57	--*-	p-hydroxybenzoic acid efflux pump subunit AaeB	IPR006726 (Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein)	GO:0005886 (plasma membrane), GO:0006810 (transport)
Niben101Scf09235g00011.1	sp|P05310|PSAA_PEA	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf05028g00003.1	sp|P45479|PPT1_RAT	*-**	Palmitoyl-protein thioesterase 1	IPR002472 (Palmitoyl protein thioesterase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0002084 (protein depalmitoylation), GO:0008474 (palmitoyl-(protein) hydrolase activity), GO:0098599 (palmitoyl hydrolase activity)
Niben101Scf00551g00001.1	sp|Q9WX29|SYR_STRCO	****	Arginine--tRNA ligase	IPR001278 (Arginine-tRNA ligase)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004814 (arginine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006420 (arginyl-tRNA aminoacylation)
Niben101Scf02335g03010.1	sp|Q9FEP7|SUT13_ARATH	****	Sulfate transporter 1.3	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0005886 (plasma membrane), GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03456g00004.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02243g07026.1	sp|Q9FXT6|PEX14_ARATH	*-**	Peroxisomal membrane protein PEX14	IPR006785 (Peroxisome membrane anchor protein Pex14p, N-terminal), IPR025655 (Peroxisomal membrane protein 14)	GO:0005515 (protein binding), GO:0005778 (peroxisomal membrane), GO:0016560 (protein import into peroxisome matrix, docking)
Niben101Scf09649g01007.1	sp|Q9SQI2|GIGAN_ARATH	*-*-	Protein GIGANTEA		
Niben101Scf04306g02006.1	sp|Q9SJ41|C3H18_ARATH	***-	Zinc finger CCCH domain-containing protein 18	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR025605 (OST-HTH/LOTUS domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01594g02015.1			Unknown protein		
Niben101Scf10541g00018.1	sp|Q1JPL7|PME18_ARATH	****	Pectinesterase/pectinesterase inhibitor 18	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf08516g03014.1	sp|P28668|SYEP_DROME	--*-	Bifunctional glutamate/proline--tRNA ligase		
Niben101Scf00869g02001.1	AT2G41770.1	***-	Protein of unknown function (DUF288) LENGTH=771	IPR005049 (Protein of unknown function DUF288)	
Niben101Scf01359g00004.1	ref|XP_002512046.1|	*-**	nucleic acid binding protein, putative [Ricinus communis] gb|EEF50715.1| nucleic acid binding protein, putative [Ricinus communis]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf04639g10007.1	ref|XP_003597182.1|	***-	Vicilin-like antimicrobial peptides 2-2 [Medicago truncatula]	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf02460g06009.1	AT1G74940.1	***-	Protein of unknown function (DUF581) LENGTH=222	IPR007650 (Zf-FLZ domain)	
Niben101Scf01438g04007.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02074g04037.1			Unknown protein		
Niben101Scf02688g05001.1	AT5G60900.1	****	receptor-like protein kinase 1 LENGTH=748	IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02315g01005.1	sp|Q8IXM3|RM41_HUMAN	*-*-	39S ribosomal protein L41, mitochondrial	IPR019189 (Ribosomal protein L27/L41, mitochondrial)	
Niben101Scf02217g07008.1	AT3G18380.2	***-	sequence-specific DNA binding transcription factors;sequence-specific DNA binding LENGTH=349		
Niben101Scf03952g03008.1	sp|Q6NRI5|SDE2_XENLA	*-*-	Protein SDE2 homolog	IPR024974 (Sde2 N-terminal domain), IPR029071 (Ubiquitin-related domain)	
Niben101Scf07511g00001.1	sp|Q8LGA1|CCD41_ARATH	***-	Cyclin-D4-1	IPR013763 (Cyclin-like)	
Niben101Scf05216g09026.1	AT1G55480.1	***-	protein containing PDZ domain, a K-box domain, and a TPR region LENGTH=335	IPR001478 (PDZ domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04786g00010.1	sp|Q2AAF6|GMT_PICPA	***-	GDP-mannose transporter	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf03693g07011.1	sp|Q9SPL4|AMP22_MACIN	*-*-	Vicilin-like antimicrobial peptides 2-2	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf02904g04008.1	gb|ABF81465.1|	*-*-	TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]		
Niben101Scf00735g00002.1	ref|XP_002526741.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF35655.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01795g04036.1	sp|Q6DGG0|PPID_RAT	****	Peptidyl-prolyl cis-trans isomerase D	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf02740g14012.1	sp|Q9NW38|FANCL_HUMAN	--*-	E3 ubiquitin-protein ligase FANCL		
Niben101Scf01648g00011.1	AT4G03115.1	***-	Mitochondrial substrate carrier family protein LENGTH=314	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf03930g05038.1	ref|XP_002516984.1|	****	nucleotide binding protein, putative [Ricinus communis] gb|EEF45598.1| nucleotide binding protein, putative [Ricinus communis]	IPR007148 (Small-subunit processome, Utp12), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05490g00005.1	sp|Q8EAQ9|KPRS_SHEON	****	Ribose-phosphate pyrophosphokinase	IPR005946 (Ribose-phosphate diphosphokinase), IPR029057 (Phosphoribosyltransferase-like), IPR029099 (Ribose-phosphate pyrophosphokinase, N-terminal domain)	GO:0000287 (magnesium ion binding), GO:0004749 (ribose phosphate diphosphokinase activity), GO:0009156 (ribonucleoside monophosphate biosynthetic process), GO:0009165 (nucleotide biosynthetic process), GO:0044249 (cellular biosynthetic process)
Niben101Scf03202g09006.1	sp|Q8LET2|NUD11_ARATH	****	Nudix hydrolase 11	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf09928g01030.1			Unknown protein		
Niben101Scf00536g01008.1	sp|P59226|H32_ARATH	***-	Histone H3.2	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf04099g10007.1	sp|Q94JX9|NACA2_ARATH	***-	Nascent polypeptide-associated complex subunit alpha-like protein 2	IPR016641 (Nascent polypeptide-associated complex subunit alpha)	GO:0005515 (protein binding)
Niben101Scf00247g02004.1			Unknown protein		
Niben101Scf07465g01007.1	AT1G19880.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=538	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR028641 (Protein RCC2)	GO:0000278 (mitotic cell cycle), GO:0007032 (endosome organization), GO:0051301 (cell division)
Niben101Scf01688g02011.1	sp|A1ALU4|RL2_PELPD	*-**	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit), GO:0016740 (transferase activity)
Niben101Scf09812g01017.1	emb|CDY43413.1|	***-	BnaC07g14800D [Brassica napus]		
Niben101Scf05961g02022.1	AT1G05990.1	****	EF hand calcium-binding protein family LENGTH=150	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01111g03001.1	sp|Q7N3V2|MDTK_PHOLL	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf13916g01016.1	ref|XP_007043029.1|	*-*-	Emb:CAB89363.1 [Theobroma cacao] gb|EOX98860.1| Emb:CAB89363.1 [Theobroma cacao]		
Niben101Scf05799g01007.1	emb|CDY63350.1|	*-*-	BnaCnng41920D [Brassica napus]	IPR005134 (Uncharacterised protein family UPF0114)	
Niben101Scf11617g00003.1	ref|XP_007033845.1|	*-*-	DNA double-strand break repair rad50 ATPase, putative isoform 2 [Theobroma cacao] gb|EOY04771.1| DNA double-strand break repair rad50 ATPase, putative isoform 2 [Theobroma cacao]		
Niben101Scf08442g00011.1	sp|Q9SLG0|NFYB1_ARATH	*-*-	Nuclear transcription factor Y subunit B-1	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf02413g03005.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00854g07031.1	sp|P51409|RM05_SOLTU	***-	60S ribosomal protein L5, mitochondrial	IPR022803 (Ribosomal protein L5 domain)	
Niben101Scf02272g04024.1	sp|Q9SJ40|VPS11_ARATH	***-	Vacuolar protein-sorting-associated protein 11 homolog	IPR000547 (Clathrin, heavy chain/VPS, 7-fold repeat), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR024763 (Vacuolar protein sorting protein 11, C-terminal)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0008270 (zinc ion binding), GO:0016192 (vesicle-mediated transport)
Niben101Scf01521g12011.1	sp|Q9FM19|HIR1_ARATH	***-	Hypersensitive-induced response protein 1	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf06763g00007.1	sp|P83326|PMEI_ACTDE	****	Pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Ctg10591g00003.1	sp|P45739|CATA_HELAN	*-**	Catalase	IPR011614 (Catalase core domain), IPR018028 (Catalase, mono-functional, haem-containing), IPR020835 (Catalase-like domain)	GO:0004096 (catalase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02436g05002.1	emb|CDY31690.1|	*-*-	BnaA05g08570D [Brassica napus]		
Niben101Scf04292g07001.1	sp|P20144|WUN1_SOLTU	***-	Wound-induced protein 1	IPR016533 (Wound-induced protein, Wun1, subgroup)	
Niben101Scf02510g03007.1	ref|XP_007017132.1|	*-*-	Domain of Uncharacterized protein function (DUF303) [Theobroma cacao] gb|EOY14357.1| Domain of Uncharacterized protein function (DUF303) [Theobroma cacao]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf06105g04004.1	AT4G35160.1	****	O-methyltransferase family protein LENGTH=382	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf04237g00019.1	gb|ABB72396.1|	*-*-	seed maturation protein [Glycine tomentella]		
Niben101Scf00367g07004.1	ref|YP_009091709.1|	***-	orf109 (mitochondrion) [Panax ginseng] gb|AHJ81034.1| orf109 (mitochondrion) [Panax ginseng]		
Niben101Scf04714g01004.1	sp|A5GFS8|VAPB_PIG	*-**	Vesicle-associated membrane protein-associated protein B	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf07278g02004.1	AT1G49740.1	***-	PLC-like phosphodiesterases superfamily protein LENGTH=359	IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain)	GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Scf17540g00004.1	sp|Q8H157|PTR19_ARATH	***-	Protein NRT1/ PTR FAMILY 4.6	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0005215 (transporter activity), GO:0006470 (protein dephosphorylation), GO:0006810 (transport), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016020 (membrane), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf01779g01002.1	sp|Q9YA64|SYY_AERPE	*-**	Tyrosine--tRNA ligase	IPR002305 (Aminoacyl-tRNA synthetase, class Ic)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004830 (tryptophan-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006436 (tryptophanyl-tRNA aminoacylation)
Niben101Scf04148g01003.1	emb|CDY68307.1|	*-*-	BnaA06g39200D [Brassica napus]		
Niben101Scf00414g06010.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf06716g01003.1	sp|P27684|PSRP5_SPIOL	-**-	50S ribosomal protein 5 alpha, chloroplastic		
Niben101Scf08273g05002.1	sp|Q9SD40|SRS1_ARATH	***-	Protein SHI RELATED SEQUENCE 1	IPR007818 (Protein of unknown function DUF702)	
Niben101Ctg09466g00002.1	sp|P0C1U4|GUN9_ORYSJ	*-*-	Endoglucanase 9	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02734g01013.1	AT2G45680.1	*-*-	TCP family transcription factor LENGTH=356	IPR005333 (Transcription factor, TCP)	
Niben101Scf20629g00007.1	ref|XP_007029537.1|	*-*-	TMV resistance protein N, putative [Theobroma cacao] gb|EOY10039.1| TMV resistance protein N, putative [Theobroma cacao]	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00640g04023.1	sp|Q0IIS3|EPHX3_XENTR	***-	Epoxide hydrolase 3	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf09442g04007.1	ref|XP_003612359.1|	*-*-	Rab proteins geranylgeranyltransferase component A [Medicago truncatula]		
Niben101Scf05154g01024.1	sp|Q9M376|VA727_ARATH	*-*-	Vesicle-associated membrane protein 727	IPR011012 (Longin-like domain)	GO:0006810 (transport)
Niben101Scf07250g02002.1			Unknown protein		
Niben101Scf02610g00014.1	AT2G01600.1	***-	ENTH/ANTH/VHS superfamily protein LENGTH=571	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf06654g02012.1	sp|Q5JLY8|GOGA5_ORYSJ	*-*-	Golgin-84		
Niben101Scf01326g05011.1	sp|A0AT30|NLTP3_LENCU	****	Non-specific lipid-transfer protein 3	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf02869g18003.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00893g01029.1	AT4G39210.1	****	Glucose-1-phosphate adenylyltransferase family protein LENGTH=521	IPR011004 (Trimeric LpxA-like), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005978 (glycogen biosynthetic process), GO:0008878 (glucose-1-phosphate adenylyltransferase activity), GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf06473g01003.1	sp|Q8T197|DHRS7_DICDI	*-**	Dehydrogenase/reductase SDR family protein 7-like	IPR002198 (Short-chain dehydrogenase/reductase SDR)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf00180g05004.1	emb|CDY19340.1|	***-	BnaC05g08490D [Brassica napus]		
Niben101Ctg14039g00002.1	sp|Q9SEE4|PIRL_SOLLC	*-*-	Pirin-like protein	IPR012093 (Pirin), IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf02399g05004.1	sp|Q5B6W0|SEC24_EMENI	--*-	Protein transport protein sec24		
Niben101Scf05559g01009.1	AT3G63170.1	***-	Chalcone-flavanone isomerase family protein LENGTH=279	IPR016087 (Chalcone isomerase)	GO:0016872 (intramolecular lyase activity)
Niben101Scf02132g01001.1	sp|P04795|HSP15_SOYBN	*-*-	17.6 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf00438g02006.1	sp|Q98KR6|NUOK_RHILO	*-**	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf09185g00007.1	sp|Q16MY0|WDR48_AEDAE	*-*-	WD repeat-containing protein 48 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03263g02005.1	sp|Q7NFW6|PSAE_GLOVI	*-**	Photosystem I reaction center subunit IV	IPR003375 (Photosystem I PsaE, reaction centre subunit IV)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf00650g03004.1	sp|Q1PES7|Y3622_ARATH	--*-	B3 domain-containing protein	IPR015300 (DNA-binding pseudobarrel domain)	
Niben101Scf01894g03010.1	AT1G03050.1	***-	ENTH/ANTH/VHS superfamily protein LENGTH=599	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf00863g01019.1	gb|ABF94638.1|	--*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR018289 (MULE transposase domain)	
Niben101Scf04109g06004.1	AT2G01150.1	***-	RING-H2 finger protein 2B LENGTH=147	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf31474g00003.1	sp|Q39117|TGT2_ARATH	*-*-	Trihelix transcription factor GT-2	IPR001005 (SANT/Myb domain)	GO:0003682 (chromatin binding)
Niben101Scf06815g01002.1	gb|KEH30241.1|	-***	plant invertase/pectin methylesterase inhibitor protein [Medicago truncatula]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00066g02012.1	sp|Q6R0E3|TRP5_ARATH	****	Telomere repeat-binding protein 5	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01372g05002.1			Unknown protein		
Niben101Scf07247g00004.1	ref|XP_003596751.1|	*-*-	SPA1-like protein [Medicago truncatula] gb|AES67002.1| ubiquitin ligase cop1, putative [Medicago truncatula]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf06507g00014.1	sp|Q66GP0|Y5738_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain), IPR029958 (Root phototropism protein 2)	GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0009638 (phototropism)
Niben101Scf14144g01013.1	ref|XP_002523552.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38891.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02367g05038.1	AT4G09010.1	****	ascorbate peroxidase 4 LENGTH=349	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00285g00001.1	sp|A9P2P4|METK3_PICSI	****	S-adenosylmethionine synthase 3	IPR002133 (S-adenosylmethionine synthetase)	GO:0004478 (methionine adenosyltransferase activity), GO:0005524 (ATP binding), GO:0006556 (S-adenosylmethionine biosynthetic process)
Niben101Scf00800g00003.1	gb|ABV21218.1|	--*-	[Arabidopsis thaliana]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf09527g00003.1			Unknown protein		
Niben101Scf00747g10011.1	sp|Q74ZD2|SEC22_ASHGO	--**	Protein transport protein SEC22	IPR001388 (Synaptobrevin)	GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf10781g02007.1	sp|Q9SUG3|ITPK2_ARATH	****	Inositol-tetrakisphosphate 1-kinase 2	IPR008656 (Inositol-tetrakisphosphate 1-kinase)	GO:0000287 (magnesium ion binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0032957 (inositol trisphosphate metabolic process), GO:0047325 (inositol tetrakisphosphate 1-kinase activity), GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity), GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
Niben101Scf06084g00004.1	AT4G04870.1	*-*-	cardiolipin synthase LENGTH=341		
Niben101Scf06435g00007.1	ref|XP_002529236.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF33149.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf10176g01015.1	ref|XP_002526997.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35369.1| conserved hypothetical protein [Ricinus communis]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf02793g24006.1	sp|P73016|FABI_SYNY3	***-	Enoyl-[acyl-carrier-protein] reductase [NADH] FabI	IPR002347 (Glucose/ribitol dehydrogenase)	
Niben101Scf03737g06014.1	sp|Q6AVI0|RSLE2_ORYSJ	***-	Zinc finger BED domain-containing protein RICESLEEPER 2	IPR003656 (Zinc finger, BED-type), IPR012337 (Ribonuclease H-like domain), IPR025525 (hAT-like transposase, RNase-H fold)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding)
Niben101Scf00542g07018.1	ref|NP_001068343.1|	***-	product [Oryza sativa Japonica Group]	IPR007658 (Protein of unknown function DUF594), IPR025315 (Domain of unknown function DUF4220)	
Niben101Scf02290g02021.1	AT5G04140.2	****	glutamate synthase 1 LENGTH=1648	IPR006005 (Glutamate synthase, NADH/NADPH, small subunit 1), IPR009051 (Alpha-helical ferredoxin), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain), IPR028261 (Dihydroprymidine dehydrogenase domain II), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0003824 (catalytic activity), GO:0005506 (iron ion binding), GO:0006537 (glutamate biosynthetic process), GO:0006807 (nitrogen compound metabolic process), GO:0008152 (metabolic process), GO:0010181 (FMN binding), GO:0015930 (glutamate synthase activity), GO:0016040 (glutamate synthase (NADH) activity), GO:0016491 (oxidoreductase activity), GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors), GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor), GO:0045181 (glutamate synthase activity, NAD(P)H as acceptor), GO:0050660 (flavin adenine dinucleotide binding), GO:0051536 (iron-sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06674g05021.1	sp|Q7ZWF4|RN145_DANRE	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04020g06011.1	gb|AES70859.2|	***-	P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00854g10004.1	ref|YP_009045783.1|	***-	orf109b (mitochondrion) [Batis maritima] gb|AIC83386.1| orf109b (mitochondrion) [Batis maritima]		
Niben101Scf00110g05012.1	tpg|DAA41303.1|	*-**	TPA: metal ion binding protein [Zea mays]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf09696g00026.1	sp|P24794|COX1_BETVU	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03949g02012.1	sp|Q6NQB7|B3GT7_ARATH	*-**	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf06172g02014.1	sp|Q9GKX6|GALM_PIG	***-	Aldose 1-epimerase	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0019318 (hexose metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf00627g05014.1	sp|Q0WUQ1|BAG1_ARATH	****	BAG family molecular chaperone regulator 1	IPR003103 (BAG domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf01392g01003.1	sp|Q9T096|YIPL6_ARATH	***-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf02459g00024.1	sp|P27518|CB21_GOSHI	***-	Chlorophyll a-b binding protein 151, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf05767g07004.1			Unknown protein		
Niben101Scf01374g13001.1	gb|KGC97307.1|	***-	taurine catabolism dioxygenase TauD, TfdA family protein [Burkholderia pseudomallei]	IPR003819 (Taurine catabolism dioxygenase TauD/TfdA)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf11373g00007.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09709g00008.1	AT5G11650.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=390	IPR022742 (Putative lysophospholipase), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf06387g02044.1	sp|Q16586|SGCA_HUMAN	--*-	Alpha-sarcoglycan		
Niben101Scf01188g11015.1			Unknown protein		
Niben101Scf14481g00001.1	sp|Q04716|RT03_PETHY	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf08143g01005.1	sp|Q9HSF6|RNH_HALSA	--**	Ribonuclease HI	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf00216g00017.1	AT3G53940.1	*-*-	Mitochondrial substrate carrier family protein LENGTH=365	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf06113g01002.1	sp|Q8S9L6|CRK29_ARATH	*-*-	Cysteine-rich receptor-like protein kinase 29	IPR002902 (Gnk2-homologous domain)	
Niben101Scf02015g00001.1	ref|XP_007030727.1|	--*-	Chaperone DnaJ-domain superfamily protein, putative isoform 2 [Theobroma cacao] gb|EOY11229.1| Chaperone DnaJ-domain superfamily protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf04644g00011.1	sp|Q7Y1Z0|CHI5_ORYSJ	****	Chitinase 5	IPR016283 (Glycoside hydrolase, family 19), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process), GO:0008061 (chitin binding), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf01175g00001.1	sp|Q4KFC4|FADB_PSEF5	*-**	Fatty acid oxidation complex subunit alpha	IPR022694 (3-hydroxyacyl-CoA dehydrogenase)	GO:0003857 (3-hydroxyacyl-CoA dehydrogenase activity), GO:0006631 (fatty acid metabolic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process), GO:0070403 (NAD+ binding)
Niben101Scf02803g00007.1	sp|Q465F3|TRPD_METBF	****	Anthranilate phosphoribosyltransferase	IPR005940 (Anthranilate phosphoribosyl transferase)	GO:0000162 (tryptophan biosynthetic process), GO:0004048 (anthranilate phosphoribosyltransferase activity), GO:0008152 (metabolic process), GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Ctg03213g00001.1	AT3G14270.1	*-*-	phosphatidylinositol-4-phosphate 5-kinase family protein LENGTH=1791	IPR002423 (Chaperonin Cpn60/TCP-1)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process)
Niben101Scf06570g03015.1			Unknown protein		
Niben101Scf02475g08013.1	ref|NP_001049221.1|	--*-	product [Oryza sativa Japonica Group]	IPR008545 (WEB family)	
Niben101Scf02648g02003.1			Unknown protein		
Niben101Scf04430g03010.1	sp|Q6NQI8|LAG13_ARATH	***-	LAG1 longevity assurance homolog 3	IPR016439 (Longevity assurance, LAG1/LAC1)	GO:0016021 (integral component of membrane)
Niben101Scf06385g00020.1			Unknown protein	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf04093g00020.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf01758g01008.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf05177g03011.1	gb|AAP82807.1|	*-*-	resistance protein RPP8-like protein [Arabidopsis thaliana]		
Niben101Scf00343g05010.1	sp|A2BSM6|MIAB_PROMS	*-*-	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	IPR013848 (Methylthiotransferase, N-terminal), IPR023970 (Methylthiotransferase/radical SAM-type protein)	GO:0003824 (catalytic activity), GO:0009451 (RNA modification), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf04669g02012.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf02798g00010.1	sp|B2U7Q8|NUOD_RALPJ	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11056g01003.1	ref|XP_002533735.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF28647.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05413g01013.1	gb|ABF94497.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf06722g05003.1	AT2G39380.1	*-**	exocyst subunit exo70 family protein H2 LENGTH=637	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf01025g13016.1	ref|XP_002873142.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH49401.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf10535g00001.1	sp|Q40778|C74A2_PARAR	***-	Allene oxide synthase	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00936g02010.1	sp|Q9SV13|SUT31_ARATH	****	Sulfate transporter 3.1	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport), GO:1902358 (sulfate transmembrane transport)
Niben101Scf06345g01003.1	AT2G21970.1	***-	stress enhanced protein 2 LENGTH=202	IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf04292g11008.1	AT5G56350.1	****	Pyruvate kinase family protein LENGTH=498	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf02567g00001.1			Unknown protein		
Niben101Scf19757g00004.1	sp|Q42564|APX3_ARATH	--*-	L-ascorbate peroxidase 3, peroxisomal		
Niben101Scf00509g04007.1	sp|P34102|PK3_DICDI	*-**	Protein kinase 3	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06113g03005.1	sp|O49561|G2OX8_ARATH	***-	Gibberellin 2-beta-dioxygenase 8	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf06187g00002.1	sp|Q6P4L9|NFRKB_XENTR	*-*-	Nuclear factor related to kappa-B-binding protein	IPR024867 (Nuclear factor related to kappa-B-binding protein)	GO:0031011 (Ino80 complex)
Niben101Scf23176g00002.1	AT5G16680.1	*-*-	RING/FYVE/PHD zinc finger superfamily protein LENGTH=1311	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf01983g09006.1	AT1G78590.1	****	NAD(H) kinase 3 LENGTH=317	IPR002504 (Inorganic polyphosphate/ATP-NAD kinase)	GO:0003951 (NAD+ kinase activity), GO:0006741 (NADP biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf09191g02002.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf02857g00011.1	sp|Q8LGH4|CUL4_ARATH	****	Cullin-4	IPR001373 (Cullin, N-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf01433g08036.1			Unknown protein		
Niben101Scf02625g06019.1	sp|Q6GPJ5|LRC40_XENLA	*-*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf07040g02002.1	AT5G27000.1	****	kinesin 4 LENGTH=987	IPR001715 (Calponin homology domain), IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf13146g00034.1	AT3G52990.1	*-**	Pyruvate kinase family protein LENGTH=527	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf01696g02013.1	AT3G04710.1	***-	ankyrin repeat family protein LENGTH=456	IPR011990 (Tetratricopeptide-like helical domain), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf06423g02006.1	sp|Q87ZB3|FADA_PSESM	***-	3-ketoacyl-CoA thiolase	IPR002155 (Thiolase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04570g01005.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000742 (Epidermal growth factor-like domain), IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf01518g06001.1	sp|A4FAJ5|MIAA_SACEN	****	tRNA dimethylallyltransferase	IPR002627 (tRNA isopentenyltransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf03871g02005.1			Unknown protein		
Niben101Scf11483g00010.1	sp|O59942|AAP2_NEUCR	*-**	Amino-acid permease 2	IPR002293 (Amino acid/polyamine transporter I), IPR004841 (Amino acid permease/ SLC12A domain)	GO:0003333 (amino acid transmembrane transport), GO:0006810 (transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01745g07016.1	AT2G07771.2	****	Cytochrome C assembly protein LENGTH=256	IPR002541 (Cytochrome c assembly protein), IPR003557 (Cytochrome c-type biogenesis protein CcmC)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf05307g00002.1	sp|Q8S230|AMT22_ORYSJ	*-**	Ammonium transporter 2 member 2	IPR001905 (Ammonium transporter), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf00369g08010.1	tpg|DAA41729.1|	***-	TPA: hypothetical protein ZEAMMB73_055425 [Zea mays]		
Niben101Scf04158g02001.1	gb|AEW48210.1|	*-*-	disease resistance protein RGH5 [Solanum huancabambense]		
Niben101Scf05811g02027.1	sp|P46217|RPOL_SULAC	-***	DNA-directed RNA polymerase subunit L	IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain)	GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf07402g05008.1			Unknown protein		
Niben101Scf01338g02001.1	gb|AEL22979.1|	*-*-	Cycloidea-like protein group 1B [Lupinus sp. 6-CEH]	IPR005333 (Transcription factor, TCP)	
Niben101Scf01220g01004.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf03000g00011.1	AT5G35750.1	****	histidine kinase 2 LENGTH=1176	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR006189 (CHASE), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08078g00005.1	sp|Q0WSY2|FPP4_ARATH	***-	Filament-like plant protein 4	IPR008587 (Filament-like plant protein)	
Niben101Scf02690g01004.1	sp|Q7NPM5|RPIA_GLOVI	****	Ribose-5-phosphate isomerase A	IPR004788 (Ribose 5-phosphate isomerase, type A)	GO:0004751 (ribose-5-phosphate isomerase activity), GO:0009052 (pentose-phosphate shunt, non-oxidative branch)
Niben101Scf07253g02016.1	gb|AES70859.2|	***-	P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf04141g01005.1			Unknown protein		
Niben101Scf06123g07001.1	sp|Q653H7|ARFR_ORYSJ	****	Auxin response factor 18	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf05711g01001.1	sp|P0CD56|NU2C1_VITVI	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic	IPR017443 (Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf05163g00008.1	sp|Q79665|GAG_HV1MV	--*-	Gag polyprotein	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf01578g00006.1	sp|Q7U3W6|RF2_SYNPX	*-*-	Peptide chain release factor 2		
Niben101Scf25768g00011.1	sp|B3H4F1|SP1L1_ARATH	***-	Protein SPIRAL1-like 1		
Niben101Scf03352g03002.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf05756g00003.1	sp|O04719|P2C77_ARATH	****	Protein phosphatase 2C 77	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf02218g01005.1	sp|P93332|NOD3_MEDTR	*-*-	Bidirectional sugar transporter N3		
Niben101Ctg12826g00003.1	AT5G40160.1	***-	Ankyrin repeat family protein LENGTH=315	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf10036g04001.1	sp|Q9SY66|FRS11_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 11		
Niben101Scf01422g01029.1	emb|CDY31518.1|	*-*-	BnaA10g13530D [Brassica napus]		
Niben101Scf01189g00010.1	AT4G36850.1	***-	PQ-loop repeat family protein / transmembrane family protein LENGTH=392	IPR006603 (PQ-loop repeat)	
Niben101Scf02680g01006.1	sp|Q94KB7|MLO6_ARATH	*-*-	MLO-like protein 6	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf09649g05001.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13558g01003.1	ref|WP_008317216.1|	-**-	Protein of unknown function (DUF3148) [Leptolyngbya sp. PCC 6406]	IPR021495 (Protein of unknown function DUF3148)	
Niben101Scf08041g03001.1	sp|Q9ZW07|PUM1_ARATH	***-	Pumilio homolog 1	IPR012940 (Nucleic acid binding NABP), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Ctg16104g00002.1	sp|Q8RYM9|LAC2_ORYSJ	***-	Laccase-2	IPR008972 (Cupredoxin)	
Niben101Scf03735g04005.1	sp|B5FSB9|MSRA_SALDC	*-**	Peptide methionine sulfoxide reductase MsrA	IPR002569 (Peptide methionine sulphoxide reductase MsrA), IPR028427 (Peptide methionine sulfoxide reductase)	GO:0006979 (response to oxidative stress), GO:0008113 (peptide-methionine (S)-S-oxide reductase activity), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0030091 (protein repair), GO:0055114 (oxidation-reduction process)
Niben101Scf07563g02004.1	AT5G46330.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1173	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Ctg12357g00004.1	sp|Q9C8T7|PP101_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01820g00009.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03374g00001.1	sp|B7K331|RS19_CYAP8	*-**	30S ribosomal protein S19	IPR001063 (Ribosomal protein L22/L17), IPR002222 (Ribosomal protein S19/S15), IPR002325 (Cytochrome f), IPR009019 (K homology domain, prokaryotic type), IPR015946 (K homology domain-like, alpha/beta), IPR023575 (Ribosomal protein S19, superfamily), IPR024094 (Cytochrome f large domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005506 (iron ion binding), GO:0005840 (ribosome), GO:0006412 (translation), GO:0009055 (electron carrier activity), GO:0015935 (small ribosomal subunit), GO:0015979 (photosynthesis), GO:0020037 (heme binding), GO:0031361 (integral component of thylakoid membrane)
Niben101Scf03673g03005.1	sp|Q8SQ27|RBM12_MACMU	*-**	RNA-binding protein 12	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04323g04021.1			Unknown protein		
Niben101Scf11723g02003.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf00167g00016.1	AT3G22540.1	***-	Protein of unknown function (DUF1677) LENGTH=110	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf02272g00001.1	sp|Q9C8W3|FUT13_ARATH	****	Alpha-(1,4)-fucosyltransferase	IPR001503 (Glycosyl transferase, family 10)	GO:0006486 (protein glycosylation), GO:0008417 (fucosyltransferase activity), GO:0016020 (membrane)
Niben101Scf02716g00003.1	ref|NP_001175326.1|	--*-	[Oryza sativa Japonica Group] dbj|BAH94054.1| [Oryza sativa Japonica Group]		
Niben101Scf01372g01006.1	sp|Q7ZVX5|REEP3_DANRE	*-*-	Receptor expression-enhancing protein 3	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf01046g02013.1	sp|Q8T197|DHRS7_DICDI	****	Dehydrogenase/reductase SDR family protein 7-like	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02511g07003.1	sp|Q9FGM1|PYL8_ARATH	***-	Abscisic acid receptor PYL8	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf01701g01002.1	sp|Q82WN0|TATB_NITEU	*-*-	Sec-independent protein translocase protein TatB		
Niben101Scf00603g08014.1	sp|Q8EEH8|AROA_SHEON	****	3-phosphoshikimate 1-carboxyvinyltransferase	IPR006264 (3-phosphoshikimate 1-carboxyvinyltransferase), IPR013792 (RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta), IPR023193 (3-phosphoshikimate 1-carboxyvinyltransferase, conserved site)	GO:0003824 (catalytic activity), GO:0003866 (3-phosphoshikimate 1-carboxyvinyltransferase activity), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf00345g01021.1	sp|P12424|GLNA_NICPL	****	Glutamine synthetase	IPR008147 (Glutamine synthetase, beta-Grasp), IPR014746 (Glutamine synthetase/guanido kinase, catalytic domain), IPR027302 (Glutamine synthetase, N-terminal conserved site), IPR027303 (Glutamine synthetase, glycine-rich site)	GO:0003824 (catalytic activity), GO:0004356 (glutamate-ammonia ligase activity), GO:0006542 (glutamine biosynthetic process), GO:0006807 (nitrogen compound metabolic process)
Niben101Scf07532g01003.1	ref|XP_007038465.1|	*-*-	Microtubule associated protein family protein isoform 4 [Theobroma cacao] gb|EOY22966.1| Microtubule associated protein family protein isoform 4 [Theobroma cacao]		
Niben101Scf02688g01006.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf04838g02010.1	sp|Q9SX20|PTR18_ARATH	***-	Protein NRT1/ PTR FAMILY 3.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05633g01015.1	sp|O04202|EIF3F_ARATH	****	Eukaryotic translation initiation factor 3 subunit F	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR024969 (Rpn11/EIF3F C-terminal domain), IPR027531 (Eukaryotic translation initiation factor 3 subunit F)	GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf01792g00012.1			Unknown protein		
Niben101Scf05988g06005.1	gb|AES96559.2|	*-*-	BZIP transcription factor [Medicago truncatula]		
Niben101Scf01025g00012.1	sp|Q6DJ87|CC90B_XENTR	***-	Coiled-coil domain-containing protein 90B, mitochondrial	IPR024461 (Protein of unknown function DUF1640)	
Niben101Scf07508g04003.1	AT3G28740.1	***-	Cytochrome P450 superfamily protein LENGTH=509	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03673g02007.1	ref|XP_002521723.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF40710.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf02517g01024.1	sp|Q07878|VPS13_YEAST	*-*-	Vacuolar protein sorting-associated protein 13	IPR026847 (Vacuolar protein sorting-associated protein 13), IPR026854 (Vacuolar protein sorting-associated protein 13A N-terminal domain)	
Niben101Scf16376g00001.1	AT5G32440.3	***-	Ubiquitin system component Cue protein LENGTH=265	IPR009060 (UBA-like)	GO:0005515 (protein binding)
Niben101Scf01750g12007.1	AT3G11590.1	***-	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=622		
Niben101Scf01396g06004.1	sp|Q5RE95|WDR5B_PONAB	*-*-	WD repeat-containing protein 5B	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf07706g00023.1	AT5G03795.1	***-	Exostosin family protein LENGTH=518	IPR004263 (Exostosin-like)	
Niben101Scf22144g00005.1			Unknown protein		
Niben101Scf01513g00010.1	ref|WP_009632881.1|	--*-	Protein of unknown function (DUF2996) [Synechocystis sp. PCC 7509]	IPR021374 (Protein of unknown function DUF2996)	
Niben101Scf04879g06004.1	AT2G01540.1	***-	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=180		
Niben101Scf01171g03019.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf18771g00012.1	AT2G37970.1	***-	SOUL heme-binding family protein LENGTH=225	IPR006917 (SOUL haem-binding protein), IPR011256 (Regulatory factor, effector binding domain)	
Niben101Scf01887g00004.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03300g02001.1	sp|Q9FX85|PER10_ARATH	****	Peroxidase 10	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00920g09017.1	AT3G24840.1	*-*-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=579	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf16657g00010.1	AT1G19180.1	***-	jasmonate-zim-domain protein 1 LENGTH=253	IPR010399 (Tify), IPR018467 (CO/COL/TOC1, conserved site)	
Niben101Scf13041g01003.1	sp|Q9NPB3|CABP2_HUMAN	--**	Calcium-binding protein 2	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00337g02007.1			Unknown protein		
Niben101Scf02134g00007.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01749g04013.1			Unknown protein		
Niben101Scf04643g03003.1			Unknown protein		
Niben101Scf04509g01016.1	sp|Q6FRZ9|ATM_CANGA	*-*-	Serine/threonine-protein kinase TEL1	IPR003152 (PIK-related kinase, FATC), IPR011009 (Protein kinase-like domain), IPR014009 (PIK-related kinase), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf03413g01011.1	sp|Q5U403|MVD1_DANRE	****	Diphosphomevalonate decarboxylase	IPR005935 (Diphosphomevalonate/phosphomevalonate decarboxylase)	GO:0004163 (diphosphomevalonate decarboxylase activity), GO:0005524 (ATP binding), GO:0005829 (cytosol), GO:0008299 (isoprenoid biosynthetic process), GO:0016831 (carboxy-lyase activity), GO:0019287 (isopentenyl diphosphate biosynthetic process, mevalonate pathway)
Niben101Scf04011g03002.1			Unknown protein		
Niben101Scf02952g01008.1			Unknown protein		
Niben101Scf00630g03011.1	sp|Q9FLG1|BXL4_ARATH	***-	Beta-D-xylosidase 4	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026891 (Fibronectin type III-like domain), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00597g06004.1	AT4G28720.1	****	Flavin-binding monooxygenase family protein LENGTH=426	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03085g07015.1	sp|Q873N1|GWT1_ASPFU	****	GPI-anchored wall transfer protein 1	IPR009447 (GWT1)	GO:0005789 (endoplasmic reticulum membrane), GO:0006506 (GPI anchor biosynthetic process), GO:0016021 (integral component of membrane), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf11251g00005.1	AT3G47550.3	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=288	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf37110g00003.1	sp|A3LWX1|GMT_PICST	*-*-	GDP-mannose transporter	IPR029663 (GDP-mannose transporter GONST4, plant)	GO:0005794 (Golgi apparatus), GO:0015780 (nucleotide-sugar transport)
Niben101Scf10628g00011.1	sp|Q9SIT5|CHX15_ARATH	****	Cation/H(+) antiporter 15	IPR006153 (Cation/H+ exchanger), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf11702g00022.1	sp|Q9LZJ3|XXT1_ARATH	*-*-	Xyloglucan 6-xylosyltransferase 1	IPR008630 (Galactosyl transferase)	GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03732g03003.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04138g01017.1	sp|Q6DRD9|ABHDB_DANRE	--*-	Alpha/beta hydrolase domain-containing protein 11	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03510g06011.1	sp|O80340|ERF78_ARATH	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06164g00002.1	AT5G50000.1	*-**	Protein kinase superfamily protein LENGTH=385	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02613g03001.1	AT2G26640.1	***-	3-ketoacyl-CoA synthase 11 LENGTH=509	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00069g15010.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00560g02009.1	sp|Q8GX77|FB316_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf03135g00003.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf04569g03006.1	AT2G34650.1	****	Protein kinase superfamily protein LENGTH=438	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00456g00003.1	sp|Q9LV33|BGL44_ARATH	***-	Beta-glucosidase 44	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05730g00021.1	sp|O64477|Y2913_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain)	
Niben101Scf10579g02007.1	ref|XP_002511441.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF52043.1| DNA binding protein, putative [Ricinus communis]	IPR001025 (Bromo adjacent homology (BAH) domain)	GO:0003682 (chromatin binding)
Niben101Scf01267g07001.1			Unknown protein		
Niben101Scf06374g00014.1	AT3G22250.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=461	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01834g02011.1	AT1G49975.1	****	INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages;	IPR008796 (Photosystem I PsaN, reaction centre subunit N)	GO:0005516 (calmodulin binding), GO:0009522 (photosystem I), GO:0015979 (photosynthesis), GO:0042651 (thylakoid membrane)
Niben101Scf06727g00035.1	sp|O00566|MPP10_HUMAN	*-*-	U3 small nucleolar ribonucleoprotein protein MPP10	IPR007151 (Mpp10 protein)	
Niben101Scf05581g00010.1	AT1G55920.1	****	serine acetyltransferase 2;1 LENGTH=314	IPR005881 (Serine O-acetyltransferase)	GO:0005737 (cytoplasm), GO:0006535 (cysteine biosynthetic process from serine), GO:0009001 (serine O-acetyltransferase activity), GO:0016740 (transferase activity)
Niben101Scf00326g01008.1	AT5G06900.1	*-*-	cytochrome P450, family 93, subfamily D, polypeptide 1 LENGTH=507	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00750g02005.1	sp|Q00783|ICI1_SOLTU	*-**	Proteinase inhibitor 1	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding)
Niben101Scf03988g00004.1	sp|Q9FIX3|PP407_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03662g02001.1	sp|Q9QWZ1|RAD1_MOUSE	***-	Cell cycle checkpoint protein RAD1	IPR003021 (Rad1/Rec1/Rad17)	GO:0005634 (nucleus), GO:0006281 (DNA repair)
Niben101Scf09472g02008.1	ref|XP_002523926.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38495.1| conserved hypothetical protein [Ricinus communis]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf08792g00010.1	sp|B5FBC3|UREG_VIBFM	***-	Urease accessory protein UreG	IPR012202 ([NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0006807 (nitrogen compound metabolic process), GO:0016151 (nickel cation binding)
Niben101Scf02406g01018.1	sp|B0KK45|ARGC_PSEPG	****	N-acetyl-gamma-glutamyl-phosphate reductase	IPR000706 (N-acetyl-gamma-glutamyl-phosphate reductase, type 1), IPR012280 (Semialdehyde dehydrogenase, dimerisation domain), IPR016040 (NAD(P)-binding domain)	GO:0003942 (N-acetyl-gamma-glutamyl-phosphate reductase activity), GO:0005737 (cytoplasm), GO:0006526 (arginine biosynthetic process), GO:0008652 (cellular amino acid biosynthetic process), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0046983 (protein dimerization activity), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf16812g00009.1	sp|Q13435|SF3B2_HUMAN	--*-	Splicing factor 3B subunit 2		
Niben101Scf01628g02006.1	sp|Q9H6B9|EPHX3_HUMAN	***-	Epoxide hydrolase 3	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf09554g00004.1	sp|Q9LTV8|PP224_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05112g02001.1	AT5G62650.1	***-	Tic22-like family protein LENGTH=529	IPR007378 (Tic22-like)	
Niben101Scf00494g01011.1	sp|Q7Y1C5|BRC2A_ARATH	*-*-	Protein BREAST CANCER SUSCEPTIBILITY 2 homolog A	IPR002093 (BRCA2 repeat)	
Niben101Scf00286g05019.1	ref|XP_002523935.1|	****	hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gb|EEF38422.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00240g00013.1	AT3G42725.1	***-	Putative membrane lipoprotein LENGTH=202		
Niben101Scf04554g01004.1	AT4G39400.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1196	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf07399g00026.1	sp|Q5ZHZ4|HAKAI_CHICK	*-*-	E3 ubiquitin-protein ligase Hakai	IPR007087 (Zinc finger, C2H2), IPR017907 (Zinc finger, RING-type, conserved site)	GO:0046872 (metal ion binding)
Niben101Scf04669g00002.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf00152g13011.1	gb|ABI34321.1|	*-*-	RNase H family protein [Solanum demissum]		
Niben101Scf06623g00017.1	emb|CDY38580.1|	***-	BnaC06g30030D [Brassica napus]		
Niben101Scf16378g01012.1	sp|P46510|CAHX_FLABI	***-	Carbonic anhydrase	IPR001765 (Carbonic anhydrase)	GO:0004089 (carbonate dehydratase activity), GO:0008270 (zinc ion binding), GO:0015976 (carbon utilization)
Niben101Scf10628g00012.1	AT5G14030.1	*-*-	translocon-associated protein beta (TRAPB) family protein LENGTH=195	IPR008856 (Translocon-associated protein subunit beta)	GO:0005783 (endoplasmic reticulum), GO:0016021 (integral component of membrane)
Niben101Scf01326g04004.1	sp|P41098|RL34_TOBAC	***-	60S ribosomal protein L34	IPR008195 (Ribosomal protein L34Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00051g04001.1			Unknown protein		
Niben101Scf07743g00009.1	ref|XP_007042342.1|	*-*-	Embryo defective 1273, putative isoform 1 [Theobroma cacao] gb|EOX98173.1| Embryo defective 1273, putative isoform 1 [Theobroma cacao]		
Niben101Scf14634g01008.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf00747g01016.1	sp|Q556Y4|KC1_DICDI	****	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07643g00003.1	sp|E9Q634|MYO1E_MOUSE	*-**	Unconventional myosin-Ie	IPR010926 (Myosin tail 2)	GO:0003774 (motor activity), GO:0016459 (myosin complex)
Niben101Scf02668g00016.1	emb|CDY09800.1|	*-*-	BnaC09g43610D [Brassica napus]		
Niben101Scf00524g00005.1	emb|CDY44141.1|	--*-	BnaA09g31110D [Brassica napus]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf04627g05021.1	sp|Q5L0Q3|RNC_GEOKA	*-**	Ribonuclease 3	IPR011907 (Ribonuclease III)	GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0006396 (RNA processing), GO:0016075 (rRNA catabolic process)
Niben101Scf03747g01016.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00920g01006.1	sp|Q8CI11|GNL3_MOUSE	*-**	Guanine nucleotide-binding protein-like 3	IPR006073 (GTP binding domain), IPR014813 (Guanine nucleotide-binding protein-like 3, N-terminal domain), IPR023179 (GTP-binding protein, orthogonal bundle domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf05767g08014.1	AT3G43610.1	*-**	Spc97 / Spc98 family of spindle pole body (SBP) component LENGTH=1207	IPR007259 (Gamma-tubulin complex component protein)	GO:0000226 (microtubule cytoskeleton organization), GO:0000922 (spindle pole), GO:0005815 (microtubule organizing center)
Niben101Scf01409g12027.1	sp|C4K2H4|RL22_RICPU	*-**	50S ribosomal protein L22	IPR001063 (Ribosomal protein L22/L17)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf06529g01003.1	AT1G01225.1	***-	NC domain-containing protein-related LENGTH=260	IPR007053 (LRAT-like domain)	
Niben101Scf03705g02015.1	sp|O74933|UAP1_CANAX	***-	UDP-N-acetylglucosamine pyrophosphorylase	IPR002618 (UTP--glucose-1-phosphate uridylyltransferase family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0008152 (metabolic process), GO:0070569 (uridylyltransferase activity)
Niben101Scf02525g03016.1			Unknown protein	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf01143g06003.1	sp|Q8RU27|UPTG2_SOLTU	***-	Alpha-1,4-glucan-protein synthase [UDP-forming] 2	IPR004901 (Reversibly glycosylated polypeptide family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016866 (intramolecular transferase activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf13036g00002.1			Unknown protein		
Niben101Ctg09288g00001.1	sp|Q02971|CADH7_ARATH	*-*-	Cinnamyl alcohol dehydrogenase 7	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02601g07018.1	AT1G09380.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=374	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf06013g00005.1	sp|Q24K02|IDE_BOVIN	***-	Insulin-degrading enzyme	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0046872 (metal ion binding)
Niben101Scf04950g01004.1	AT2G22560.1	***-	Kinase interacting (KIP1-like) family protein LENGTH=947	IPR011684 (KIP1-like)	
Niben101Scf11084g02005.1	sp|Q3Z6P3|GPDA_DEHM1	*-**	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	IPR006168 (Glycerol-3-phosphate dehydrogenase, NAD-dependent), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004367 (glycerol-3-phosphate dehydrogenase [NAD+] activity), GO:0005737 (cytoplasm), GO:0005975 (carbohydrate metabolic process), GO:0006072 (glycerol-3-phosphate metabolic process), GO:0009331 (glycerol-3-phosphate dehydrogenase complex), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0046168 (glycerol-3-phosphate catabolic process), GO:0050662 (coenzyme binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03863g07002.1	AT3G57980.1	*-**	DNA-binding bromodomain-containing protein LENGTH=632	IPR001005 (SANT/Myb domain), IPR001487 (Bromodomain)	GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf04879g06003.1	sp|Q9SI78|PPR93_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03652g03001.1	ref|NP_171924.2|	***-	P-loop containing nucle [Arabidopsis thaliana]	IPR010488 (Zeta toxin domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016301 (kinase activity)
Niben101Scf01692g03008.1	sp|Q97ID9|PHOU_CLOAB	--*-	Phosphate-specific transport system accessory protein PhoU homolog	IPR018289 (MULE transposase domain)	
Niben101Scf00530g10008.1			Unknown protein		
Niben101Scf01002g13003.1	sp|Q8LGR0|CHE1_CHEAL	***-	Pollen allergen Che a 1	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf02015g05002.1	sp|P93348|TBP_TOBAC	****	TATA-box-binding protein	IPR000814 (TATA-box binding protein)	GO:0003677 (DNA binding), GO:0006352 (DNA-templated transcription, initiation)
Niben101Scf06734g01026.1	sp|O80931|AS1_ARATH	*-*-	Transcription factor AS1	IPR009057 (Homeodomain-like)	
Niben101Scf01068g06006.1	gb|KFG51137.1|	--*-	tranport-associated late exocytosis protein, partial [Toxoplasma gondii p89]		
Niben101Scf00991g13004.1	sp|Q838R5|EZRA_ENTFA	--*-	Septation ring formation regulator EzrA		
Niben101Scf01433g05003.1	sp|Q9FH57|GATA5_ARATH	****	GATA transcription factor 5	IPR016679 (Transcription factor, GATA, plant)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding), GO:0045893 (positive regulation of transcription, DNA-templated)
Niben101Scf12738g00009.1	gb|AAN71903.1|	*-*-	calcium/calmodulin protein kinase 1 [Nicotiana tabacum] gb|AAS67891.1| calcium/calmodulin protein kinase [Nicotiana tabacum]		
Niben101Scf03027g02009.1	sp|Q96299|14339_ARATH	***-	14-3-3-like protein GF14 mu	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf03541g00012.1	sp|A8A8W3|RS4_IGNH4	****	30S ribosomal protein S4	IPR001912 (Ribosomal protein S4/S9, N-terminal), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0006412 (translation), GO:0015935 (small ribosomal subunit), GO:0019843 (rRNA binding)
Niben101Scf06442g00016.1	AT3G05840.2	*-**	Protein kinase superfamily protein LENGTH=409	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05588g13021.1	sp|Q94AD8|FBW3_ARATH	*-*-	F-box/WD-40 repeat-containing protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00170g02001.1	sp|Q9SIB4|WOX3_ARATH	*-*-	WUSCHEL-related homeobox 3	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf03857g02007.1	sp|Q9SS81|PP221_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07788g00001.1	sp|Q9SZ20|PP339_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00163g15001.1	sp|P42124|EZ_DROME	*-**	Histone-lysine N-methyltransferase E(z)	IPR001214 (SET domain), IPR003105 (SRA-YDG), IPR003616 (Post-SET domain), IPR007728 (Pre-SET domain), IPR015947 (PUA-like domain), IPR025794 (Histone H3-K9 methyltransferase, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016571 (histone methylation), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0042393 (histone binding)
Niben101Scf00082g08007.1			Unknown protein		
Niben101Scf03445g01005.1	AT2G33170.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf26646g00004.1	AT2G06010.1	***-	OBP3-responsive gene 4 LENGTH=188		
Niben101Scf08467g03010.1	sp|P63375|PSTB1_STRP1	--*-	Phosphate import ATP-binding protein PstB 1		
Niben101Scf04656g00016.1	AT5G23310.1	****	Fe superoxide dismutase 3 LENGTH=263	IPR001189 (Manganese/iron superoxide dismutase)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00905g04001.1	sp|Q07060|ATP9_PETSP	--**	ATP synthase subunit 9, mitochondrial	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf02307g02026.1	sp|Q5PJE4|LSRB_SALPA	--*-	Autoinducer 2-binding protein LsrB		
Niben101Scf00870g07018.1	sp|Q338N2|C3H62_ORYSJ	*-*-	Zinc finger CCCH domain-containing protein 62	IPR000571 (Zinc finger, CCCH-type), IPR003034 (SAP domain)	GO:0046872 (metal ion binding)
Niben101Scf02404g02011.1	AT2G39140.1	*-**	pseudouridine synthase family protein LENGTH=410	IPR002942 (RNA-binding S4 domain), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf13360g00001.1	emb|CDX96071.1|	***-	BnaA07g26600D [Brassica napus]		
Niben101Scf02031g00026.1	sp|Q2UPY3|IF4A_ASPOR	****	ATP-dependent RNA helicase eIF4A	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf08002g02001.1	sp|Q9H898|ZMAT4_HUMAN	--**	Zinc finger matrin-type protein 4	IPR003604 (Zinc finger, U1-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf01006g03016.1	sp|Q39828|SDL5A_SOYBN	***-	Dynamin-related protein 5A	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf03737g02008.1	sp|Q9T076|ENL2_ARATH	*-*-	Early nodulin-like protein 2	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf01369g03007.1			Unknown protein		
Niben101Scf02100g00005.1	sp|A0KF11|BIOH_AERHH	--*-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf09670g02006.1	dbj|BAA95789.1|	*-*-	KED [Nicotiana tabacum]		
Niben101Scf26225g00003.1	dbj|BAA97556.1|	--*-	mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf02522g00001.1	emb|CDY19372.1|	***-	BnaC05g08810D [Brassica napus]		
Niben101Scf00971g00014.1	AT5G04480.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=1050	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf09248g08003.1	sp|Q6X4A2|CIPKV_ORYSJ	****	CBL-interacting protein kinase 31	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12735g00005.1	AT3G02130.1	****	receptor-like protein kinase 2 LENGTH=1151	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00917g01017.1	sp|Q54GS1|CL16A_DICDI	*-*-	Protein CLEC16A homolog	IPR016024 (Armadillo-type fold), IPR019155 (Uncharacterised protein family FPL)	GO:0005488 (binding)
Niben101Scf16022g02004.1	sp|A7VLV1|SGRW_PEA	***-	Protein STAY-GREEN, chloroplastic	IPR024438 (Staygreen protein)	
Niben101Scf08011g00007.1	sp|Q9ZPS7|TMN3_ARATH	*-*-	Transmembrane 9 superfamily member 3	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf05351g00010.1	sp|Q9WTL2|RAB25_MOUSE	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf04082g01004.1	sp|P42813|RNS1_ARATH	****	Ribonuclease 1	IPR001568 (Ribonuclease T2-like)	GO:0003723 (RNA binding), GO:0033897 (ribonuclease T2 activity)
Niben101Scf04528g06003.1	sp|Q9SYM2|BBX22_ARATH	****	B-box zinc finger protein 22	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf03121g04008.1	sp|A8IPT1|DNAK_AZOC5	***-	Chaperone protein DnaK	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf14115g01004.1	sp|P23922.1|HBP1A_WHEAT	****	RecName: Full=Transcription factor HBP-1a; AltName: Full=Histone-specific transcription factor HBP1 [Triticum aestivum] pir||A41349 histone-specific transcription factor HBP1 - wheat emb|CAA40101.1| HBP-1a [Triticum aestivum] gb|AAA34293.1| DNA-binding protein [Triticum aestivum] dbj|BAA07289.1| transcription factor HBP-1a(17) [Triticum aestivum]	IPR004827 (Basic-leucine zipper domain), IPR012900 (G-box binding, MFMR)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05391g03014.1	AT4G28500.1	***-	NAC domain containing protein 73 LENGTH=305	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf13695g01008.1			Unknown protein		
Niben101Scf10326g00004.1	AT4G28720.1	****	Flavin-binding monooxygenase family protein LENGTH=426	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01433g08037.1	emb|CDX90662.1|	*-*-	BnaA03g41190D [Brassica napus]	IPR021788 (Protein of unknown function DUF3353)	
Niben101Scf03924g00012.1	gb|ACG31432.1|	***-	secondary cell wall-related glycosyltransferase family 47 [Zea mays]	IPR004263 (Exostosin-like)	
Niben101Scf01627g02009.1	AT5G08550.1	*-**	GC-rich sequence DNA-binding factor-like protein LENGTH=908	IPR012890 (GC-rich sequence DNA-binding factor)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00712g04005.1	sp|Q9BE72|GTR12_MACFA	*-**	Solute carrier family 2, facilitated glucose transporter member 12	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf05329g04001.1	gb|KGZ10670.1|	-**-	gluconolaconase [Serratia marcescens]	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf04193g02004.1	sp|Q9M2K0|MYO16_ARATH	*-*-	Myosin-16		
Niben101Scf00607g03007.1	AT4G18190.1	*-*-	purine permease 6 LENGTH=387	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf00471g01008.1	sp|Q1PEN8|FB168_ARATH	--*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf02182g13008.1	gb|ABN08421.1|	*-**	nucleic acid binding , related [Medicago truncatula]	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf07327g00003.1	gb|KEH39458.1|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf05109g02008.1	sp|Q9LHP4|RCH2_ARATH	--*-	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf05688g00001.1			Unknown protein		
Niben101Scf12094g00012.1	AT3G06240.1	***-	F-box family protein LENGTH=427	IPR017451 (F-box associated interaction domain)	
Niben101Scf16604g00002.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00168g10029.1	sp|Q6LL68|BGAL_PHOPR	****	Beta-galactosidase	IPR006101 (Glycoside hydrolase, family 2), IPR008979 (Galactose-binding domain-like), IPR011013 (Galactose mutarotase-like domain), IPR013812 (Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain), IPR017853 (Glycoside hydrolase superfamily), IPR023230 (Glycoside hydrolase, family 2, conserved site), IPR023232 (Glycoside hydrolase, family 2, active site)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004565 (beta-galactosidase activity), GO:0005975 (carbohydrate metabolic process), GO:0009341 (beta-galactosidase complex), GO:0030246 (carbohydrate binding)
Niben101Scf00161g03014.1	AT1G55805.1	***-	BolA-like family protein LENGTH=160	IPR002634 (BolA protein)	
Niben101Scf00297g00007.1	emb|CAP66276.1|	--*-	NBS-LRR disease resistance protein [Musa acuminata]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02778g03003.1	sp|Q94AS9|CNGC4_ARATH	*-*-	Cyclic nucleotide-gated ion channel 4	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf08801g00005.1	gb|AFW59200.1|	***-	ser/Thr-rich protein T10 in DGCR region [Zea mays]	IPR008551 (Protein of unknown function DUF833)	
Niben101Scf06493g01013.1	sp|Q10CQ1|MAD14_ORYSJ	****	MADS-box transcription factor 14	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf08192g01010.1	sp|Q9LKJ1|HIBC1_ARATH	*-*-	3-hydroxyisobutyryl-CoA hydrolase 1		
Niben101Scf17879g00004.1			Unknown protein		
Niben101Scf02749g00004.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00376g03006.1	AT3G48820.1	*-**	Glycosyltransferase family 29 (sialyltransferase) family protein LENGTH=440	IPR001675 (Glycosyl transferase, family 29)	GO:0006486 (protein glycosylation), GO:0008373 (sialyltransferase activity)
Niben101Scf00245g03009.1	ref|XP_002531850.1|	*-**	calcium ion binding protein, putative [Ricinus communis] gb|EEF30528.1| calcium ion binding protein, putative [Ricinus communis]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00024g04005.1	AT1G74740.1	****	calcium-dependent protein kinase 30 LENGTH=541	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03045g04005.1	sp|Q9FX56|SOT8_ARATH	*-**	Cytosolic sulfotransferase 8	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf00343g05011.1	sp|Q65JE5|MIAB_BACLD	***-	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	IPR007197 (Radical SAM), IPR023970 (Methylthiotransferase/radical SAM-type protein)	GO:0003824 (catalytic activity), GO:0009451 (RNA modification), GO:0016740 (transferase activity), GO:0043412 (macromolecule modification), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf21138g01011.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf04318g03002.1			Unknown protein		
Niben101Scf12127g00003.1	sp|Q54G07|SLMO_DICDI	***-	Protein slowmo homolog	IPR006797 (PRELI/MSF1)	
Niben101Scf03673g01005.1	AT2G17500.1	*-*-	Auxin efflux carrier family protein LENGTH=396	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf07987g01014.1	sp|A9WH69|RL2_CHLAA	--*-	50S ribosomal protein L2	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf00123g06023.1	AT3G24740.1	***-	Protein of unknown function (DUF1644) LENGTH=354	IPR012866 (Protein of unknown function DUF1644), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf02074g05016.1	sp|B9KJ67|RL2_ANAMF	*-*-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02969g00007.1	sp|P09189|HSP7C_PETHY	--*-	Heat shock cognate 70 kDa protein	IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf00574g11007.1	ref|NP_001279466.1|	***-	splicing factor 3b, subunit 6, 14kDa [Callorhinchus milii] gb|AFK11161.1| pre-mRNA branch site protein p14 [Callorhinchus milii]	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02156g11001.1	AT3G12920.1	****	SBP (S-ribonuclease binding protein) family protein LENGTH=335	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02929g05009.1			Unknown protein		
Niben101Scf13601g00046.1			Unknown protein		
Niben101Scf00538g00001.1	sp|Q8LGI3|ARC2A_ARATH	****	Actin-related protein 2/3 complex subunit 2A	IPR007188 (Actin-related protein 2/3 complex subunit 2)	GO:0005885 (Arp2/3 protein complex), GO:0015629 (actin cytoskeleton), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf01888g03004.1	sp|Q1IMP4|SECA_KORVE	*-*-	Protein translocase subunit SecA	IPR011116 (SecA Wing/Scaffold), IPR014018 (SecA motor DEAD), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0016020 (membrane), GO:0017038 (protein import)
Niben101Scf07027g05003.1	sp|O22757|MLO8_ARATH	***-	MLO-like protein 8	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf05767g07005.1	sp|Q38806|HSP22_ARATH	*-*-	22.0 kDa heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf06621g01005.1	sp|C3PNA6|RUVB_RICAE	*-**	Holliday junction ATP-dependent DNA helicase RuvB	IPR003959 (ATPase, AAA-type, core), IPR008921 (DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal), IPR009060 (UBA-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006260 (DNA replication)
Niben101Scf09773g01014.1	sp|P30162|ACT1_ONCVO	***-	Actin-1	IPR004000 (Actin family)	
Niben101Scf00369g24007.1	sp|Q89A53|SSB_BUCBP	****	Single-stranded DNA-binding protein	IPR000424 (Primosome PriB/single-strand DNA-binding)	GO:0003697 (single-stranded DNA binding), GO:0006260 (DNA replication)
Niben101Scf04639g10006.1	ref|XP_003597166.1|	***-	Vicilin-like antimicrobial peptides 2-3 [Medicago truncatula]	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf02056g03005.1	emb|CDY48761.1|	***-	BnaA02g30220D [Brassica napus]		
Niben101Scf00781g06015.1	sp|Q945M9|NFYA9_ARATH	*-**	Nuclear transcription factor Y subunit A-9	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0016602 (CCAAT-binding factor complex)
Niben101Scf09869g00001.1	ref|NP_181670.2|	***-	Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] gb|AEC09968.1| Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf06028g00011.1	gb|AES63455.2|	--*-	alpha/beta-hydrolase superfamily protein [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01005g05018.1	ref|WP_026732594.1|	***-	1,4-dihydroxy-2-naphthoate octaprenyltransferase [Fischerella sp. PCC 9605]	IPR000537 (UbiA prenyltransferase family)	GO:0004659 (prenyltransferase activity), GO:0016021 (integral component of membrane)
Niben101Scf01236g03009.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC)	GO:0043531 (ADP binding)
Niben101Scf04412g00017.1	sp|Q38S23|COX2_BATGR	*-**	Cytochrome c oxidase subunit 2	IPR008972 (Cupredoxin)	GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0016020 (membrane)
Niben101Scf05516g04016.1	sp|B3QWF8|SUCC_CHLT3	***-	Succinyl-CoA ligase [ADP-forming] subunit beta	IPR005809 (Succinyl-CoA synthetase, beta subunit), IPR016102 (Succinyl-CoA synthetase-like)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0046872 (metal ion binding)
Niben101Scf00258g00009.1	sp|Q9M8S6|SKOR_ARATH	*-*-	Potassium channel SKOR	IPR014710 (RmlC-like jelly roll fold), IPR020683 (Ankyrin repeat-containing domain)	
Niben101Scf01369g00021.1	AT1G54850.1	***-	HSP20-like chaperones superfamily protein LENGTH=206		
Niben101Scf02068g01001.1	emb|CDY50532.1|	***-	BnaA01g30480D [Brassica napus]		
Niben101Scf02299g02001.1	sp|A2WT95|PLA1_ORYSI	***-	Phospholipase A1-II 1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf00709g02008.1	emb|CDX72436.1|	***-	BnaC07g44580D [Brassica napus]	IPR024738 (Transcriptional coactivator Hfi1/Transcriptional adapter 1)	GO:0070461 (SAGA-type complex)
Niben101Scf05519g02007.1	ref|WP_017309877.1|	***-	epimerase [Fischerella sp. PCC 9339]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf00417g00008.1	AT3G52990.1	****	Pyruvate kinase family protein LENGTH=527	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Ctg11205g00002.1	sp|A9UM79|DRS7C_XENTR	*-**	Dehydrogenase/reductase SDR family member 7C	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02367g05037.1			Unknown protein		
Niben101Scf01623g18008.1	AT4G02030.2	*-*-	Vps51/Vps67 family (components of vesicular transport) protein LENGTH=805		
Niben101Scf00558g00006.1	sp|A4QJT5|RR4_OLIPU	****	30S ribosomal protein S4, chloroplastic	IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0006412 (translation), GO:0015935 (small ribosomal subunit), GO:0019843 (rRNA binding)
Niben101Scf07580g05014.1	sp|Q8L868|E1311_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 11	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09527g01008.1	sp|Q9FJA6|RS33_ARATH	***-	40S ribosomal protein S3-3	IPR001351 (Ribosomal protein S3, C-terminal), IPR009019 (K homology domain, prokaryotic type)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08755g02029.1	sp|Q9M302|PP270_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03644g03013.1	ref|XP_002510978.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF51580.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02798g01009.1	sp|A5VAN3|NUON_SPHWW	*-*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf00854g04024.1	sp|P29388|NU5M_ARATH	--*-	NADH-ubiquinone oxidoreductase chain 5		
Niben101Scf03755g00005.1	AT3G11560.2	***-	LETM1-like protein LENGTH=872	IPR011685 (LETM1-like)	
Niben101Scf08977g00004.1	sp|Q942D4|BURP3_ORYSJ	***-	BURP domain-containing protein 3	IPR004873 (BURP domain)	
Niben101Scf02455g01011.1	sp|P31414|AVP1_ARATH	****	Pyrophosphate-energized vacuolar membrane proton pump 1	IPR004131 (Pyrophosphate-energised proton pump)	GO:0004427 (inorganic diphosphatase activity), GO:0009678 (hydrogen-translocating pyrophosphatase activity), GO:0015992 (proton transport), GO:0016020 (membrane)
Niben101Scf16532g02016.1	dbj|BAB01344.1|	*-*-	reverse transcriptase-like protein [Arabidopsis thaliana]		
Niben101Scf17255g00006.1	sp|P49972|SR542_SOLLC	*-**	Signal recognition particle 54 kDa protein 2	IPR004125 (Signal recognition particle, SRP54 subunit, M-domain)	GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0048500 (signal recognition particle)
Niben101Scf04157g00005.1	AT2G41130.1	*-*-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=253		
Niben101Scf02621g02023.1	gb|ACG27246.1|	***-	tubulin alpha-6 chain [Zea mays]		
Niben101Scf02549g03011.1	sp|Q5REC0|ZC21A_PONAB	--*-	Zinc finger C2HC domain-containing protein 1A	IPR026319 (Zinc finger C2HC domain-containing protein), IPR026870 (Zinc-ribbon domain)	
Niben101Scf14799g00019.1	gb|ABF95053.1|	*-*-	expressed protein [Oryza sativa Japonica Group] gb|EEE58722.1| hypothetical protein OsJ_10184 [Oryza sativa Japonica Group]		
Niben101Scf01020g00017.1	AT1G29370.1	***-	Kinase-related protein of unknown function (DUF1296) LENGTH=831	IPR009060 (UBA-like), IPR009719 (Protein of unknown function DUF1296, plant)	GO:0005515 (protein binding)
Niben101Scf04388g00010.1			Unknown protein		
Niben101Scf06814g00002.1	AT1G27000.1	***-	Protein of unknown function (DUF1664) LENGTH=304	IPR012458 (Protein of unknown function DUF1664)	
Niben101Scf00457g07011.1	sp|Q96PM5|ZN363_HUMAN	****	RING finger and CHY zinc finger domain-containing protein 1	IPR004039 (Rubredoxin-type fold), IPR008913 (Zinc finger, CHY-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017921 (Zinc finger, CTCHY-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00270g07005.1	sp|Q9CAL2|CRK3_ARATH	*-**	Cysteine-rich receptor-like protein kinase 3	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03263g02006.1	tpg|DAA37023.1|	***-	TPA: hypothetical protein ZEAMMB73_248209 [Zea mays]	IPR021883 (Protein of unknown function DUF3493)	
Niben101Scf02133g05001.1	sp|D4B2G3|MAP2_ARTBC	*-*-	Methionine aminopeptidase 2	IPR000994 (Peptidase M24, structural domain)	
Niben101Scf02444g00037.1	ref|XP_007048544.1|	****	TGACG-sequence-specific DNA-binding protein TGA-2.1, putative [Theobroma cacao] gb|EOX92701.1| TGACG-sequence-specific DNA-binding protein TGA-2.1, putative [Theobroma cacao]	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00397g08001.1	sp|Q7XT39|EXPB5_ORYSJ	***-	Expansin-B5	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0019953 (sexual reproduction)
Niben101Scf01326g10017.1	AT5G39950.1	***-	thioredoxin 2 LENGTH=133	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02339g01016.1	sp|Q9LS90|LFR_ARATH	***-	Armadillo repeat-containing protein LFR	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf07250g02003.1	sp|B0TYQ6|KATG_FRAP2	*-**	Catalase-peroxidase	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03985g02024.1	AT1G64300.1	****	Protein kinase family protein LENGTH=717	IPR010632 (Domain of unknown function DUF1221), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07944g00007.1	AT4G15050.1	***-	Protein of Unknown Function (DUF239) LENGTH=396	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf02699g00022.1	sp|Q98PZ7|RL6_MYCPU	***-	50S ribosomal protein L6	IPR000702 (Ribosomal protein L6)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf03695g00004.1	sp|F4IWA8|TBL41_ARATH	***-	Protein trichome birefringence-like 41	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf05238g01004.1	sp|Q5NBP9|GLU2B_ORYSJ	***-	Glucosidase 2 subunit beta	IPR002172 (Low-density lipoprotein (LDL) receptor class A repeat), IPR009011 (Mannose-6-phosphate receptor binding domain), IPR028146 (Glucosidase II beta subunit, N-terminal)	GO:0005515 (protein binding)
Niben101Scf05135g01003.1	ref|NP_565550.1|	****	protein RER1C1 [Arabidopsis thaliana] RecName: Full=Protein RER1C; Short=AtRER1C [Arabidopsis thaliana] dbj|BAA33862.1| AtRER1C [Arabidopsis thaliana] gb|AAL47450.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAB87102.2| putative integral membrane protein [Arabidopsis thaliana] gb|AAM19906.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAM63458.1| putative integral membrane protein [Arabidopsis thaliana] gb|AEC07439.1| protein RER1C1 [Arabidopsis thaliana]	IPR004932 (Retrieval of early ER protein Rer1)	GO:0016021 (integral component of membrane)
Niben101Scf32174g00003.1	sp|F4KHG6|CTPA1_ARATH	*-**	Carboxyl-terminal-processing peptidase 1, chloroplastic	IPR029045 (ClpP/crotonase-like domain)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf20629g00006.1			Unknown protein		
Niben101Scf07162g01018.1	sp|Q8BT14|CNOT4_MOUSE	*-*-	CCR4-NOT transcription complex subunit 4	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01579g01025.1	AT3G43520.1	*-*-	Transmembrane proteins 14C LENGTH=240	IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane)
Niben101Scf07182g02008.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf04881g01001.1	AT2G34410.1	***-	O-acetyltransferase family protein LENGTH=540	IPR012419 (Cas1p 10 TM acyl transferase domain)	
Niben101Scf01171g08017.1	sp|Q9MAT0|PSD1B_ARATH	*-*-	26S proteasome non-ATPase regulatory subunit 1 homolog B		
Niben101Scf05690g01008.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02824g03013.1	sp|Q8L6J4|RPO1A_TOBAC	****	DNA-directed RNA polymerase 1A	IPR002092 (DNA-directed RNA polymerase, phage-type)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf01438g04006.1	sp|Q9FIE3|VIN3_ARATH	***-	Protein VERNALIZATION INSENSITIVE 3	IPR013783 (Immunoglobulin-like fold)	GO:0005515 (protein binding)
Niben101Scf02074g04036.1	gb|ADG85342.1|	****	NADH dehydrogenase subunit 6 [Silene latifolia]	IPR001457 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 6)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06909g04007.1	sp|P98204|ALA1_ARATH	****	Phospholipid-transporting ATPase 1	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf00975g00005.1	sp|Q94C77|RPKL_ARATH	--*-	Receptor protein kinase-like protein	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf05494g01014.1	sp|Q93YN0|SCO2_ARATH	*-*-	Protein disulfide-isomerase SCO2		
Niben101Scf00438g00020.1			Unknown protein		
Niben101Ctg16287g00006.1	sp|Q55141|ILVH_SYNY3	****	Acetolactate synthase small subunit	IPR004789 (Acetolactate synthase, small subunit)	GO:0003984 (acetolactate synthase activity), GO:0008152 (metabolic process), GO:0009082 (branched-chain amino acid biosynthetic process), GO:0016597 (amino acid binding)
Niben101Scf02217g07009.1	sp|Q4FRX3|MAO1_PSYA2	****	NAD-dependent malic enzyme	IPR001891 (Malic oxidoreductase)	GO:0004470 (malic enzyme activity), GO:0004471 (malate dehydrogenase (decarboxylating) (NAD+) activity), GO:0006108 (malate metabolic process), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02668g05024.1	sp|B0K657|FTSH2_THEPX	*-**	ATP-dependent zinc metalloprotease FtsH 2	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf03523g01024.1	sp|O04659|PP398_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06345g04001.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf09131g01001.1	sp|Q67XQ0|Y4424_ARATH	***-	DUF21 domain-containing protein	IPR000644 (CBS domain), IPR002550 (Domain of unknown function DUF21)	
Niben101Scf03037g00008.1	sp|Q2JL77|RL36_SYNJB	*-*-	50S ribosomal protein L36	IPR000473 (Ribosomal protein L36)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf14338g03001.1	AT5G66770.1	***-	GRAS family transcription factor LENGTH=584	IPR005202 (Transcription factor GRAS)	
Niben101Scf00058g02016.1	gb|KFF73965.1|	****	RNA methyltransferase [Chryseobacterium sp. P1-3]	IPR029028 (Alpha/beta knot methyltransferases)	GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0008173 (RNA methyltransferase activity)
Niben101Scf01212g02011.1	sp|O81078|GLR29_ARATH	****	Glutamate receptor 2.9	IPR001320 (Ionotropic glutamate receptor), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf03946g00015.1	sp|Q9LFL5|PP390_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00497g04001.1	gb|ADA69902.1|	--*-	Ycf68 [Cynomorium songaricum]	IPR022546 (Uncharacterised protein family Ycf68)	
Niben101Scf04727g02011.1	sp|Q0WPZ6|PP158_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05911g00001.1	AT4G19645.1	***-	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein LENGTH=268	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf02080g02005.1	sp|O82567|AAPT1_ARATH	***-	Choline/ethanolaminephosphotransferase 1	IPR000462 (CDP-alcohol phosphatidyltransferase)	GO:0008654 (phospholipid biosynthetic process), GO:0016020 (membrane), GO:0016780 (phosphotransferase activity, for other substituted phosphate groups)
Niben101Scf00414g08002.1	sp|Q9H330|TM245_HUMAN	*-*-	Transmembrane protein 245	IPR002549 (Uncharacterised protein family UPF0118)	
Niben101Scf08149g01006.1	sp|Q9SBA5|ITPK1_ARATH	****	Inositol-tetrakisphosphate 1-kinase 1	IPR008656 (Inositol-tetrakisphosphate 1-kinase)	GO:0000287 (magnesium ion binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0032957 (inositol trisphosphate metabolic process), GO:0047325 (inositol tetrakisphosphate 1-kinase activity), GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity), GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
Niben101Scf02881g05018.1	sp|Q03015|NDUS6_NEUCR	***-	NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial	IPR019377 (NADH-ubiquinone oxidoreductase, subunit 10)	
Niben101Scf07616g00001.1	sp|Q9NPJ3|ACO13_HUMAN	--*-	Acyl-coenzyme A thioesterase 13	IPR029069 (HotDog domain)	
Niben101Scf01795g04035.1	emb|CDY49328.1|	***-	BnaA05g32900D [Brassica napus]		
Niben101Scf03292g06005.1	gb|AEK83458.1|	*-*-	At5g60700-like protein [Capsella grandiflora]	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf11617g00002.1	ref|XP_002530299.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF32066.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04347g01033.1	sp|Q86MW9|SINA_SCHMA	****	E3 ubiquitin-protein ligase sina	IPR004162 (E3 ubiquitin-protein ligase SINA like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf07162g05016.1	sp|Q9C9V6|Y1790_ARATH	*-*-	BTB/POZ domain-containing protein	IPR027356 (NPH3 domain), IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0009958 (positive gravitropism)
Niben101Scf09527g00002.1	sp|Q02084|A33_PLEWA	--**	Zinc-binding protein A33	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06293g01002.1	sp|Q5B3Y9|SRB8_EMENI	--*-	Mediator of RNA polymerase II transcription subunit 12		
Niben101Scf00388g06006.1	emb|CDX81297.1|	***-	BnaC09g07080D [Brassica napus]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01785g06008.1	sp|Q54YS0|Y8111_DICDI	*-**	DNA-binding protein DDB_G0278111	IPR002836 (PDCD5-related protein)	GO:0003677 (DNA binding)
Niben101Ctg16357g00002.1			Unknown protein		
Niben101Scf02074g03037.1	ATMG00660.1	***-	hypothetical protein chrM:190104-190553 REVERSE LENGTH=149		
Niben101Scf12680g05005.1	ref|WP_026100699.1|	*-*-	abortive phage infection protein [Synechococcus sp. PCC 7336]	IPR003675 (CAAX amino terminal protease)	GO:0016020 (membrane)
Niben101Scf19533g01002.1	sp|B0BR94|SYV_ACTPJ	*-**	Valine--tRNA ligase	IPR002303 (Valine-tRNA ligase), IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004832 (valine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006438 (valyl-tRNA aminoacylation)
Niben101Scf00854g07030.1	sp|P81378|CYB_BLAVI	***-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal), IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf00073g03012.1			Unknown protein		
Niben101Scf02413g03006.1	ref|XP_007014647.1|	*-*-	Ras GTPase-activating-like protein rng2 isoform 2 [Theobroma cacao] gb|EOY32266.1| Ras GTPase-activating-like protein rng2 isoform 2 [Theobroma cacao]		
Niben101Scf04020g06010.1	gb|AES99079.2|	***-	P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Ctg15422g00004.1	sp|Q0IJ20|RN145_XENTR	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04714g01005.1	AT5G04140.2	*-**	glutamate synthase 1 LENGTH=1648	IPR013785 (Aldolase-type TIM barrel), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0003824 (catalytic activity), GO:0006807 (nitrogen compound metabolic process), GO:0015930 (glutamate synthase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03889g01014.1	sp|Q94CD8|E134_ARATH	***-	Glucan endo-1,3-beta-glucosidase 4	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02480g02007.1	AT5G11840.1	***-	Protein of unknown function (DUF1230) LENGTH=265	IPR009631 (Uncharacterised protein family Ycf36)	
Niben101Scf01392g01002.1	sp|Q2V3E2|YIPL5_ARATH	***-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf06909g04005.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR000742 (Epidermal growth factor-like domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg16458g00001.1	ref|XP_003599472.1|	--*-	Defensin-like protein [Medicago truncatula]		
Niben101Scf04844g00001.1	sp|Q9ZPE7|EXO_ARATH	***-	Protein EXORDIUM	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf02284g01002.1	gb|KEH38305.1|	****	APO RNA-binding protein [Medicago truncatula]	IPR023342 (APO domain)	GO:0003723 (RNA binding)
Niben101Scf02074g04034.1	sp|P59131|RS4_SHEON	--*-	30S ribosomal protein S4	IPR002942 (RNA-binding S4 domain), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding)
Niben101Scf01221g12010.1	AT1G04560.1	***-	AWPM-19-like family protein LENGTH=186	IPR008390 (AWPM-19-like)	
Niben101Scf01970g03001.1	sp|Q9SJ06|FB115_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf00187g02026.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf08143g01004.1			Unknown protein		
Niben101Scf06853g00001.1			Unknown protein		
Niben101Scf27893g00001.1	sp|Q6L545|GID1_ORYSJ	***-	Gibberellin receptor GID1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf00721g00009.1	AT4G23730.1	*-*-	Galactose mutarotase-like superfamily protein LENGTH=306	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf02014g00032.1	sp|Q3TPR7|T184C_MOUSE	*-*-	Transmembrane protein 184C	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184)	
Niben101Scf02734g01014.1	sp|B0JYZ2|PEX16_XENTR	***-	Peroxisomal membrane protein PEX16	IPR013919 (Peroxisome membrane protein, Pex16)	
Niben101Scf05437g04013.1	ref|NP_001147739.1|	*-**	phot s psbY [Zea mays]	IPR009388 (Photosystem II PsbY)	GO:0009523 (photosystem II), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0030145 (manganese ion binding)
Niben101Scf06262g00001.1			Unknown protein		
Niben101Scf01119g02002.1	sp|Q5SPX3|RN215_MOUSE	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07250g02001.1	sp|Q9MBA3|RAD17_ARATH	****	Cell cycle checkpoint protein RAD17	IPR004582 (Checkpoint protein Rad17/Rad24), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0007049 (cell cycle)
Niben101Scf12154g01006.1			Unknown protein		
Niben101Scf12089g00031.1	sp|Q8LGE7|NDA8B_ARATH	***-	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B	IPR010625 (CHCH)	
Niben101Scf04796g00011.1	sp|Q9SH26|PP102_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002625 (Smr protein/MutS2 C-terminal), IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00915g02003.1	sp|Q91HK4|POL2_ARMVN	--*-	RNA2 polyprotein		
Niben101Scf01083g04003.1	sp|Q14FH4|PSBK_POPAL	--**	Photosystem II reaction center protein K	IPR003687 (Photosystem II PsbK)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0015979 (photosynthesis)
Niben101Scf04669g02013.1	ref|XP_010103716.1|	--*-	Sentrin-specific protease 1 [Morus notabilis] gb|EXB96858.1| Sentrin-specific protease 1 [Morus notabilis]		
Niben101Scf05004g00001.1	AT5G07840.1	*-*-	Ankyrin repeat family protein LENGTH=175	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf01025g13015.1	ref|WP_027444691.1|	*-*-	membrane protein insertion efficiency factor [Prevotella baroniae]	IPR002696 (Putative membrane protein insertion efficiency factor)	
Niben101Scf01310g06002.1	ref|NP_997652.4|	--*-	keratin Kb40 [Mus musculus]		
Niben101Scf00884g00009.1	sp|Q9M2W3|PGPS2_ARATH	****	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2	IPR000462 (CDP-alcohol phosphatidyltransferase)	GO:0008654 (phospholipid biosynthetic process), GO:0016020 (membrane), GO:0016780 (phosphotransferase activity, for other substituted phosphate groups)
Niben101Scf00650g03005.1	sp|Q949Z1|PGLR4_ARATH	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01800g02003.1	ref|XP_003626920.1|	--**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf13680g02003.1	sp|P46643|AAT1_ARATH	***-	Aspartate aminotransferase, mitochondrial	IPR000796 (Aspartate/other aminotransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03202g09007.1	sp|Q9M041|BH140_ARATH	*-*-	Transcription factor bHLH140	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf12762g00008.1	gb|ADL63605.1|	*-*-	NADH dehydrogenase subunit 5, partial (mitochondrion) [Gelsemium sp. Qiu 95096]	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf03930g05037.1	emb|CDY02540.1|	--*-	BnaA08g01470D [Brassica napus]		
Niben101Scf06850g00011.1	AT4G25410.1	****	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=230	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00941g00007.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf16199g00001.1	sp|Q4V838|LTV1_XENLA	*-*-	Protein LTV1 homolog		
Niben101Scf06084g00003.1	sp|Q13310|PABP4_HUMAN	*-**	Polyadenylate-binding protein 4	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf08679g01005.1	sp|Q7TPN3|PIGV_MOUSE	****	GPI mannosyltransferase 2	IPR007315 (GPI mannosyltransferase 2)	GO:0006506 (GPI anchor biosynthetic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00854g02038.1	sp|Q06FW5|PSAA_PELHO	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf03326g02021.1	ref|XP_002514414.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF48010.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02335g01004.1			Unknown protein		
Niben101Scf00090g08013.1	sp|O48724|WEB1_ARATH	***-	Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1	IPR008545 (WEB family)	
Niben101Scf04364g01001.1	sp|Q9SP55|VATG_CITLI	****	V-type proton ATPase subunit G	IPR005124 (Vacuolar (H+)-ATPase G subunit)	GO:0015992 (proton transport), GO:0016471 (vacuolar proton-transporting V-type ATPase complex), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances)
Niben101Scf02367g05039.1	AT1G22460.1	***-	O-fucosyltransferase family protein LENGTH=565	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf00494g02003.1			Unknown protein		
Niben101Scf08573g01002.1	sp|A7SGF0|MF2NB_NEMVE	--*-	Protein MEF2BNB homolog	IPR019320 (Uncharacterised protein family UPF0402)	
Niben101Scf06763g00006.1	sp|P0C8A0|PP275_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06716g01002.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf12765g00002.1			Unknown protein		
Niben101Scf08065g01004.1	AT1G76510.3	*-**	ARID/BRIGHT DNA-binding domain-containing protein LENGTH=493	IPR001606 (ARID DNA-binding domain)	GO:0003677 (DNA binding)
Niben101Scf00484g02007.1	gb|ACN57022.1|	***-	At1g04650-like protein [Capsella grandiflora]	IPR027902 (Protein of unknown function DUF4487)	
Niben101Scf01594g06004.1	sp|F4K5L5|TBL16_ARATH	***-	Protein trichome birefringence-like 16	IPR026057 (PC-Esterase)	
Niben101Scf03850g01001.1	sp|Q9T0A0|LACS4_ARATH	*-*-	Long chain acyl-CoA synthetase 4		
Niben101Scf12211g01004.1	gb|AAM67211.1|	--*-	serine-rich protein [Arabidopsis thaliana]		
Niben101Scf10436g02012.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00440g03004.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00110g05011.1	sp|Q4J8P1|RL7A_SULAC	-**-	50S ribosomal protein L7Ae	IPR029064 (50S ribosomal protein L30e-like)	
Niben101Scf06621g01007.1	AT5G23720.1	****	dual specificity protein phosphatase family protein LENGTH=929	IPR011009 (Protein kinase-like domain), IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor), GO:0016791 (phosphatase activity)
Niben101Scf09696g00025.1	ref|YP_009045810.1|	***-	orf189 (mitochondrion) [Batis maritima] gb|AIC83413.1| orf189 (mitochondrion) [Batis maritima]		
Niben101Scf14516g00017.1	sp|Q93VY3|NAC72_ARATH	***-	NAC domain-containing protein 72	IPR003441 (NAC domain)	
Niben101Scf13221g00005.1	gb|AER52053.1|	*-*-	vWA domain containing protein [Oryza sativa Japonica Group]	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf17887g00001.1	ref|NP_001176100.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAH94828.1| [Oryza sativa Japonica Group]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf02778g03002.1	ref|XP_002521829.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF40639.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08997g00005.1	prf||1808322A	****	stearoyl-acyl carrier protein desaturase	IPR005067 (Fatty acid desaturase, type 2), IPR009078 (Ferritin-like superfamily)	GO:0006631 (fatty acid metabolic process), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0045300 (acyl-[acyl-carrier-protein] desaturase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01764g02015.1	sp|Q8S8E8|REML1_ARATH	--*-	B3 domain-containing protein REM-like 1	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf02322g07001.1	AT3G10560.1	***-	Cytochrome P450 superfamily protein LENGTH=514	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03817g04006.1	sp|A2ZFY7|FON2_ORYSI	--*-	Protein FLORAL ORGAN NUMBER2		
Niben101Scf05274g01001.1			Unknown protein		
Niben101Scf00640g04022.1	sp|Q9JJK2|LANC2_MOUSE	***-	LanC-like protein 2	IPR007822 (Lanthionine synthetase C-like)	
Niben101Scf06172g02015.1	sp|Q9GKX6|GALM_PIG	***-	Aldose 1-epimerase	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0019318 (hexose metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf02801g00006.1	sp|Q3ZCG8|EMC6_BOVIN	****	ER membrane protein complex subunit 6	IPR029008 (Rab5-interacting protein family)	GO:0005783 (endoplasmic reticulum), GO:0016021 (integral component of membrane), GO:0072546 (ER membrane protein complex)
Niben101Scf09442g04006.1	sp|O81791|RKD5_ARATH	--*-	Protein RKD5		
Niben101Scf25768g00010.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02319g06003.1	sp|A7HT69|RL27_PARL1	*-*-	50S ribosomal protein L27	IPR001684 (Ribosomal protein L27)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02803g00008.1			Unknown protein		
Niben101Scf04138g00005.1	sp|Q8BW49|TTC12_MOUSE	*-*-	Tetratricopeptide repeat protein 12	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04644g00012.1	gb|ACJ61968.1|	****	chitinase [Zea mays subsp. parviglumis]	IPR016283 (Glycoside hydrolase, family 19), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006032 (chitin catabolic process), GO:0008061 (chitin binding), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf00180g05005.1	sp|Q96PQ7|KLHL5_HUMAN	*-*-	Kelch-like protein 5	IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf05177g03012.1	sp|Q9M667|RPP13_ARATH	*-*-	Disease resistance protein RPP13	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01433g04005.1	sp|P49597|P2C56_ARATH	***-	Protein phosphatase 2C 56	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf03039g01008.1	emb|CDX88488.1|	***-	BnaC06g39320D [Brassica napus]		
Niben101Scf02509g04006.1	AT5G13450.1	*-**	delta subunit of Mt ATP synthase LENGTH=238	IPR000711 (ATPase, OSCP/delta subunit)	GO:0015986 (ATP synthesis coupled proton transport), GO:0016020 (membrane), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Scf03045g06005.1	gb|ACZ60122.1|	--**	abscisic stress ripening [Musa ABB Group]	IPR003496 (ABA/WDS induced protein)	GO:0006950 (response to stress)
Niben101Scf06529g02013.1	sp|Q9SGW3|PSD8A_ARATH	****	26S proteasome non-ATPase regulatory subunit 8 homolog A	IPR005062 (SAC3/GANP/Nin1/mts3/eIF-3 p25)	GO:0005838 (proteasome regulatory particle), GO:0006508 (proteolysis)
Niben101Scf06757g00020.1	sp|Q6NQJ8|SDG40_ARATH	*-*-	Protein SET DOMAIN GROUP 40	IPR015353 (Rubisco LSMT, substrate-binding domain)	
Niben101Scf02080g03010.1	sp|O80402|DCAM_NICSY	****	S-adenosylmethionine decarboxylase proenzyme	IPR001985 (S-adenosylmethionine decarboxylase), IPR016067 (S-adenosylmethionine decarboxylase, core), IPR018167 (S-adenosylmethionine decarboxylase subgroup)	GO:0004014 (adenosylmethionine decarboxylase activity), GO:0006597 (spermine biosynthetic process), GO:0008295 (spermidine biosynthetic process)
Niben101Scf07027g05004.1	ref|XP_007037886.1|	*-*-	Cysteine proteinases superfamily protein, putative isoform 5 [Theobroma cacao] gb|EOY22387.1| Cysteine proteinases superfamily protein, putative isoform 5 [Theobroma cacao]		
Niben101Scf04323g04020.1	sp|Q84JP1|NFYA7_ARATH	****	Nuclear transcription factor Y subunit A-7	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0016602 (CCAAT-binding factor complex)
Niben101Scf06361g05001.1	AT3G59640.1	***-	glycine-rich protein LENGTH=246		
Niben101Scf00879g00005.1	AT2G14830.1	*-*-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=454	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf21123g00006.1	sp|Q9FHH8|COL5_ARATH	*-*-	Zinc finger protein CONSTANS-LIKE 5	IPR010402 (CCT domain)	GO:0005515 (protein binding)
Niben101Scf04614g01002.1	sp|P27707|DCK_HUMAN	*-**	Deoxycytidine kinase	IPR002624 (Deoxynucleoside kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0019206 (nucleoside kinase activity)
Niben101Scf02625g06018.1	sp|Q8SPU8|DHRS4_BOVIN	****	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf05645g07012.1	sp|O95232|LC7L3_HUMAN	*-*-	Luc7-like protein 3	IPR004882 (Luc7-related)	GO:0003729 (mRNA binding), GO:0005685 (U1 snRNP), GO:0006376 (mRNA splice site selection)
Niben101Scf01023g03008.1	sp|Q9Y7P0|RISA_SCHPO	*-**	Riboflavin synthase	IPR001783 (Lumazine-binding protein), IPR023366 (ATP synthase subunit alpha-like domain), IPR026017 (Lumazine-binding domain)	GO:0004746 (riboflavin synthase activity), GO:0009231 (riboflavin biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03449g01008.1	emb|CDY61417.1|	***-	BnaCnng37810D [Brassica napus]		
Niben101Scf13000g02002.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR002902 (Gnk2-homologous domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02681g01005.1	sp|Q9SND4|HEC2_ARATH	*-*-	Transcription factor HEC2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf07851g02001.1	sp|Q8LC03|ATB13_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-13	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR013978 (MEKHLA), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf02533g00001.1	sp|Q9S7R7|Y3903_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0051260 (protein homooligomerization)
Niben101Scf06238g00002.1			Unknown protein		
Niben101Scf06672g00006.1	sp|O14775|GBB5_HUMAN	*-**	Guanine nucleotide-binding protein subunit beta-5	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf02757g03006.1	gb|ACE79411.1|	*-*-	NBS-coding resistance gene analog [Nicotiana tabacum]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01696g02012.1	emb|CDX95786.1|	***-	BnaC05g35370D [Brassica napus]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf01740g08006.1	sp|Q8LL04|CPL3_ARATH	***-	RNA polymerase II C-terminal domain phosphatase-like 3	IPR001357 (BRCT domain), IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding)
Niben101Scf08870g00005.1			Unknown protein		
Niben101Scf07253g02015.1	ref|WP_007527442.1|	***-	glutamine amidotransferase [Desulfovibrio sp. A2] gb|EGY24267.1| intracellular protease, PfpI family protein [Desulfovibrio sp. A2]	IPR006286 (Peptidase C56, PfpI), IPR029062 (Class I glutamine amidotransferase-like)	GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf01220g01003.1	emb|CDY57158.1|	***-	BnaC05g50400D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf05750g04011.1	sp|Q61466|SMRD1_MOUSE	***-	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	IPR003121 (SWIB/MDM2 domain)	GO:0005515 (protein binding)
Niben101Ctg12933g00001.1	AT4G01440.1	*-**	nodulin MtN21 /EamA-like transporter family protein LENGTH=365	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01822g09002.1	ref|NP_849739.1|	****	inactive poly [ADP-rib [Arabidopsis thaliana] gb|AEE31453.1| inactive poly [ADP-ribose] polymerase RCD1 [Arabidopsis thaliana]	IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR022003 (RST domain of plant C-terminal)	GO:0003950 (NAD+ ADP-ribosyltransferase activity)
Niben101Ctg14945g00003.1	gb|KEH35560.1|	*-*-	nucleotidyltransferase domain protein [Medicago truncatula]		
Niben101Scf00597g06003.1	AT4G28730.1	*-*-	Glutaredoxin family protein LENGTH=174	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00630g03012.1	sp|Q9LXD6|BXL3_ARATH	***-	Beta-D-xylosidase 3	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02078g06001.1	AT3G62300.2	*-*-	DOMAIN OF UNKNOWN FUNCTION 724 7 LENGTH=723	IPR007930 (Protein of unknown function DUF724)	
Niben101Scf11251g00006.1	AT5G58530.1	***-	Glutaredoxin family protein LENGTH=273	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf09133g02006.1	sp|O17320|ACT_CRAGI	***-	Actin	IPR004000 (Actin family)	
Niben101Scf00449g01013.1	AT2G39430.1	*-*-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=322	IPR004265 (Plant disease resistance response protein)	
Niben101Scf01796g01005.1	ref|XP_003588337.1|	--*-	Ribosomal protein S10 [Medicago truncatula]		
Niben101Ctg04309g00001.1	sp|P29057|HMDH1_HEVBR	*-**	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	IPR002202 (Hydroxymethylglutaryl-CoA reductase, class I/II), IPR023282 (Hydroxymethylglutaryl-CoA reductase, N-terminal)	GO:0004420 (hydroxymethylglutaryl-CoA reductase (NADPH) activity), GO:0015936 (coenzyme A metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02680g01005.1	sp|Q94KB7|MLO6_ARATH	*-*-	MLO-like protein 6	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf03226g04003.1	AT4G23650.1	****	calcium-dependent protein kinase 6 LENGTH=529	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00047g03012.1	sp|Q8H102|BH128_ARATH	***-	Transcription factor bHLH128	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03374g00002.1	sp|Q3AMN6|RS3_SYNSC	*-*-	30S ribosomal protein S3	IPR001351 (Ribosomal protein S3, C-terminal), IPR009019 (K homology domain, prokaryotic type)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03135g00002.1	sp|Q9FJB5|RP8L3_ARATH	*-*-	Disease resistance RPP8-like protein 3	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf13757g00010.1	gb|KEH32260.1|	***-	knotted 1-binding protein [Medicago truncatula]		
Niben101Scf05324g03004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04742g01004.1	sp|Q9ZQZ1|ACCO_DENCR	*-*-	1-aminocyclopropane-1-carboxylate oxidase	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00927g06004.1	sp|Q39262|ZFP3_ARATH	*-*-	Zinc finger protein 3	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf03595g09004.1	sp|P83876|TXN4A_HUMAN	***-	Thioredoxin-like protein 4A	IPR004123 (mRNA splicing factor, thioredoxin-like U5 snRNP), IPR012336 (Thioredoxin-like fold)	GO:0005681 (spliceosomal complex), GO:0007067 (mitotic nuclear division)
Niben101Scf07147g01010.1			Unknown protein		
Niben101Scf01319g01001.1	sp|Q84WL9|AP2S_ARATH	****	AP-2 complex subunit sigma	IPR016635 (Adaptor protein complex, sigma subunit)	GO:0006810 (transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0030122 (AP-2 adaptor complex)
Niben101Scf08041g01014.1	sp|P93011|PP182_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf16022g02005.1	sp|A7VLV1|SGRW_PEA	***-	Protein STAY-GREEN, chloroplastic	IPR024438 (Staygreen protein)	
Niben101Scf02207g12001.1	sp|Q9FXT6|PEX14_ARATH	****	Peroxisomal membrane protein PEX14	IPR006785 (Peroxisome membrane anchor protein Pex14p, N-terminal), IPR025655 (Peroxisomal membrane protein 14)	GO:0005515 (protein binding), GO:0005778 (peroxisomal membrane), GO:0016560 (protein import into peroxisome matrix, docking)
Niben101Scf15760g00014.1	sp|O81832|Y4729_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase		
Niben101Scf06077g01008.1	AT2G17530.1	*-*-	Protein kinase superfamily protein LENGTH=440		
Niben101Scf03147g08015.1	sp|Q9LZN0|ROGF7_ARATH	*-**	Rop guanine nucleotide exchange factor 7	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf04692g01002.1	sp|Q11180|WHT1_CAEEL	****	ABC transporter ATP-binding protein/permease wht-1	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf34305g00007.1			Unknown protein		
Niben101Scf01085g06007.1	sp|Q2HBE7|DED1_CHAGB	*-**	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf00854g00014.1	sp|P54162|RNHL_BACSU	--*-	14.7 kDa ribonuclease H-like protein		
Niben101Scf01243g00004.1	emb|CDY14672.1|	*-*-	BnaC05g19290D [Brassica napus]		
Niben101Scf12585g00006.1	AT1G68100.1	****	ZIP metal ion transporter family LENGTH=469	IPR003689 (Zinc/iron permease)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf05342g01002.1	sp|A9AF72|URE1_BURM1	*-**	Urease subunit alpha	IPR002019 (Urease, beta subunit), IPR002026 (Urease, gamma/gamma-beta subunit), IPR005848 (Urease, alpha subunit), IPR029754 (Urease nickel binding site)	GO:0006807 (nitrogen compound metabolic process), GO:0009039 (urease activity), GO:0016151 (nickel cation binding), GO:0016787 (hydrolase activity), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds), GO:0043419 (urea catabolic process)
Niben101Scf03670g04013.1	ref|XP_003615272.1|	****	Universal stress protein A-like protein [Medicago truncatula]	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf05799g01006.1	sp|Q8K4X7|PLCD_MOUSE	*-**	1-acyl-sn-glycerol-3-phosphate acyltransferase delta	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf03673g02008.1	sp|Q9WXP3|NTPTH_THEMA	***-	Nucleoside-triphosphatase THEP1	IPR004948 (Nucleoside-triphosphatase, THEP1 type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0098519 (nucleotide phosphatase activity, acting on free nucleotides)
Niben101Scf03376g03013.1	gb|AID60104.1|	-**-	At4g33800-like protein [Brassica napus]		
Niben101Scf18121g00002.1	AT2G33170.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf32746g01019.1	sp|Q8NEZ4|KMT2C_HUMAN	*-**	Histone-lysine N-methyltransferase 2C	IPR001214 (SET domain), IPR007728 (Pre-SET domain), IPR018848 (WIYLD domain), IPR025776 (Histone-lysine N-methyltransferase SUVR1/2/4)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation)
Niben101Scf27159g00005.1	sp|Q9NJV4|ACT1_NAEGR	*-**	Actin-1	IPR004000 (Actin family)	GO:0005524 (ATP binding), GO:0005856 (cytoskeleton), GO:0005885 (Arp2/3 protein complex), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf05307g00001.1	sp|Q64550|UD11_RAT	*-*-	UDP-glucuronosyltransferase 1-1	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03913g01024.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12382g00010.1	sp|P27492|CB21_TOBAC	***-	Chlorophyll a-b binding protein 16, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf11084g02003.1	sp|P0A1B0|EX3_SALTI	*-*-	Exodeoxyribonuclease III	IPR004808 (AP endonuclease 1), IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0003677 (DNA binding), GO:0004518 (nuclease activity), GO:0004519 (endonuclease activity), GO:0005622 (intracellular), GO:0006281 (DNA repair)
Niben101Scf04903g01009.1	sp|Q09433|THIO1_CAEEL	***-	Thioredoxin-1	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02668g00014.1	sp|Q0D3J9|C3H53_ORYSJ	***-	Zinc finger CCCH domain-containing protein 53	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00113g06011.1	emb|CBM56257.1|	*-**	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02868g03005.1	sp|Q9FHH5|GDU3_ARATH	*-*-	Protein GLUTAMINE DUMPER 3		
Niben101Scf10628g00010.1	sp|Q7XVM8|TIR1B_ORYSJ	***-	Transport inhibitor response 1-like protein	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf22627g00001.1	sp|Q8YMY2|RS2_NOSS1	****	30S ribosomal protein S2	IPR001865 (Ribosomal protein S2), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf08776g02031.1	AT4G32760.2	*-*-	ENTH/VHS/GAT family protein LENGTH=676		
Niben101Scf01037g00005.1	sp|Q9LVE0|PTR33_ARATH	***-	Protein NRT1/ PTR FAMILY 6.4	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01824g00017.1	AT4G31360.1	*-*-	selenium binding LENGTH=186		
Niben101Scf00803g01006.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04138g01016.1	gb|KEH35505.1|	****	calcium-dependent lipid-binding (CaLB domain) family protein, putative [Medicago truncatula]	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf09745g00006.1	sp|Q09221|CPNA2_CAEEL	*-*-	Copine family protein 2	IPR002035 (von Willebrand factor, type A), IPR010734 (Copine)	
Niben101Scf02315g00010.1	AT5G17660.1	*-**	tRNA (guanine-N-7) methyltransferase LENGTH=312	IPR001576 (Phosphoglycerate kinase), IPR003358 (tRNA (guanine-N-7) methyltransferase, Trmb type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0004618 (phosphoglycerate kinase activity), GO:0006096 (glycolytic process), GO:0006400 (tRNA modification), GO:0008176 (tRNA (guanine-N7-)-methyltransferase activity)
Niben101Scf00141g00002.1	sp|P02519|HSP11_SOYBN	***-	17.3 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf03802g00024.1	sp|Q9ZVQ9|PP2B7_ARATH	*-*-	F-box protein PP2-B7	IPR025886 (Phloem protein 2-like)	
Niben101Scf01200g02008.1	sp|P45733|PAL3_TOBAC	*-*-	Phenylalanine ammonia-lyase	IPR008948 (L-Aspartase-like), IPR023144 (Phenylalanine ammonia-lyase, shielding domain)	GO:0003824 (catalytic activity)
Niben101Scf07606g00014.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf04375g11007.1	sp|Q9ZFD9|CH10_BURVI	***-	10 kDa chaperonin	IPR020818 (Chaperonin Cpn10)	GO:0005737 (cytoplasm), GO:0006457 (protein folding)
Niben101Scf03427g05007.1	sp|P29463|TPT_SOLTU	***-	Triose phosphate/phosphate translocator, chloroplastic	IPR004696 (Triose phosphate/phosphoenolpyruvate translocator), IPR004853 (Triose-phosphate transporter domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf04569g03005.1			Unknown protein		
Niben101Scf05890g02009.1	sp|Q56WF8|SCP48_ARATH	****	Serine carboxypeptidase-like 48	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00046g09013.1	sp|B4TMG8|AES_SALSV	--*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf08035g00004.1	sp|Q6ZNW5|GDPP1_HUMAN	****	GDP-D-glucose phosphorylase 1	IPR026506 (GDP-L-galactose/GDP-D-glucose phosphorylase)	GO:0080048 (GDP-D-glucose phosphorylase activity)
Niben101Scf02399g05005.1	sp|Q9SR72|GL32_ARATH	*-*-	Germin-like protein subfamily 3 member 2	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf03790g00004.1	sp|Q54431|SRP54_STRMU	*-**	Signal recognition particle protein	IPR000897 (Signal recognition particle, SRP54 subunit, GTPase domain), IPR007222 (Signal recognition particle receptor, alpha subunit, N-terminal), IPR013822 (Signal recognition particle, SRP54 subunit, helical bundle), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005047 (signal recognition particle binding), GO:0005525 (GTP binding), GO:0005785 (signal recognition particle receptor complex), GO:0006184 (GTP catabolic process), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0006886 (intracellular protein transport)
Niben101Scf00603g08015.1	AT2G45290.1	****	Transketolase LENGTH=741	IPR005478 (Transketolase, bacterial-like), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0004802 (transketolase activity), GO:0008152 (metabolic process)
Niben101Scf03156g04007.1	emb|CDY02050.1|	*-*-	BnaC04g14510D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf03403g01018.1			Unknown protein		
Niben101Scf01372g01005.1	AT5G22220.2	****	E2F transcription factor 1 LENGTH=469	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR015633 (E2F Family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005667 (transcription factor complex), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00110g01009.1	gb|AES68921.2|	--*-	ERD (early-responsive to dehydration stress) family protein [Medicago truncatula]		
Niben101Scf09472g02009.1	sp|Q9LQ55|DRP2B_ARATH	***-	Dynamin-2B	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR011993 (Pleckstrin homology-like domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf01477g00014.1	AT2G16030.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=231	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf14206g00005.1	sp|Q9LQR0|LBD1_ARATH	***-	LOB domain-containing protein 1	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf06065g00001.1	ref|XP_002528326.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF34084.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01742g05007.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04989g03002.1	AT3G23550.1	*-*-	MATE efflux family protein LENGTH=469		
Niben101Scf02517g01023.1	sp|Q07878|VPS13_YEAST	*-*-	Vacuolar protein sorting-associated protein 13	IPR009543 (Vacuolar protein sorting-associated protein 13 domain), IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf00410g01016.1	AT4G23900.1	****	Nucleoside diphosphate kinase family protein LENGTH=237	IPR001564 (Nucleoside diphosphate kinase)	GO:0004550 (nucleoside diphosphate kinase activity), GO:0005524 (ATP binding), GO:0006165 (nucleoside diphosphate phosphorylation), GO:0006183 (GTP biosynthetic process), GO:0006228 (UTP biosynthetic process), GO:0006241 (CTP biosynthetic process)
Niben101Scf08374g05012.1	sp|Q02084|A33_PLEWA	--**	Zinc-binding protein A33	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01365g07001.1	gb|AED89984.1|	***-	PSL1a [Solanum chacoense x Solanum tuberosum]	IPR008984 (SMAD/FHA domain), IPR026721 (Transmembrane protein 18), IPR029060 (PIN domain-like)	GO:0005515 (protein binding)
Niben101Scf00902g05001.1	gb|AAU90303.2|	***-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf08407g00022.1	ref|XP_003589451.1|	-***	Pectinesterase inhibitor [Medicago truncatula] gb|AES92007.2| plant invertase/pectin methylesterase inhibitor [Medicago truncatula]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf03197g02003.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf16378g01011.1	sp|P81391|MYB05_ANTMA	***-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01765g01005.1	ref|YP_002608396.1|	***-	orf86 [Vitis vinifera] emb|CAQ77655.1| orf86 [Vitis vinifera] gb|ACS15212.1| ORF86 [Vitis vinifera]		
Niben101Scf01051g09031.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf04473g00001.1	sp|Q1C3L9|NLPI_YERPA	--*-	Lipoprotein NlpI	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00975g00006.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf16582g00005.1	sp|Q9LZQ0|CX5C2_ARATH	***-	Cytochrome c oxidase subunit 5C-2		
Niben101Scf03444g04019.1	sp|A8GPH5|DER_RICAH	***-	GTPase Der	IPR005225 (Small GTP-binding protein domain), IPR008144 (Guanylate kinase-like), IPR016484 (GTP-binding protein EngA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00747g01015.1	sp|Q9SLK6|ALA6_ARATH	****	Phospholipid-transporting ATPase 6	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf06945g00002.1			Unknown protein		
Niben101Scf01664g01007.1	sp|Q6KGW4|RR7_SCHCH	*-*-	30S ribosomal protein S7, chloroplastic	IPR000235 (Ribosomal protein S5/S7), IPR023798 (Ribosomal protein S7 domain)	GO:0006412 (translation)
Niben101Scf00023g07007.1	sp|Q6CCT1|GLGB_YARLI	--*-	1,4-alpha-glucan-branching enzyme	IPR015902 (Glycoside hydrolase, family 13)	GO:0003824 (catalytic activity)
Niben101Scf05135g05009.1	sp|Q8VC52|RBPS2_MOUSE	*-**	RNA-binding protein with multiple splicing 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03439g02001.1	gb|KEH44548.1|	*-*-	pollen protein Ole E I-like protein [Medicago truncatula]	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf11084g02004.1	sp|A3DE29|MRAY_CLOTH	--**	Phospho-N-acetylmuramoyl-pentapeptide-transferase	IPR000715 (Glycosyl transferase, family 4)	GO:0008963 (phospho-N-acetylmuramoyl-pentapeptide-transferase activity), GO:0016021 (integral component of membrane)
Niben101Scf13543g00001.1	sp|B8HPS9|RNH_CYAP4	--**	Ribonuclease H	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf01143g06004.1	sp|Q8RU27|UPTG2_SOLTU	*-*-	Alpha-1,4-glucan-protein synthase [UDP-forming] 2	IPR004901 (Reversibly glycosylated polypeptide family)	GO:0016866 (intramolecular transferase activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf04436g15050.1	gb|KCB42368.1|	--*-	long-chain-fatty-acid--CoA ligase [Bordetella hinzii 5132]		
Niben101Scf14115g01003.1			Unknown protein		
Niben101Scf04636g03006.1			Unknown protein		
Niben101Scf06734g01025.1			Unknown protein		
Niben101Scf10669g00005.1			Unknown protein		
Niben101Scf01002g13002.1	AT1G78870.1	***-	ubiquitin-conjugating enzyme 35 LENGTH=154	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf08157g02006.1	sp|Q9LJB7|BBX32_ARATH	*-**	B-box zinc finger protein 32	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf02600g00015.1	emb|CAE03517.2|	*-*-	OsJ_16233 [Oryza sativa Japonica Group]		
Niben101Scf00530g10007.1	sp|Q0TTQ7|SPEE_CLOP1	***-	Polyamine aminopropyl transferase	IPR001045 (Spermidine/spermine synthases family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase), IPR030373 (Polyamine biosynthesis domain, conserved site)	GO:0003824 (catalytic activity)
Niben101Scf08268g00015.1	ref|NP_191316.5|	*-*-	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gb|AEE79673.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]		
Niben101Scf01513g00012.1	sp|O49621|MLO1_ARATH	***-	MLO-like protein 1	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf02881g05019.1	AT3G44730.1	*-**	kinesin-like protein 1 LENGTH=1087	IPR001715 (Calponin homology domain), IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf06252g01006.1	ref|XP_002535856.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08149g01007.1	sp|Q03065|RPSB_NOSS1	****	RNA polymerase sigma-B factor	IPR014284 (RNA polymerase sigma-70 like domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Scf02935g00004.1	sp|P23137|GRP1_TOBAC	--*-	Glycine-rich protein	IPR010800 (Glycine rich protein)	
Niben101Scf06348g00034.1	sp|Q40477|ERF4_TOBAC	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg11217g00002.1	ref|WP_007522503.1|	*-**	carbon-nitrogen family hydrolase [Desulfovibrio sp. A2] gb|EGY26936.1| N-carbamoylputrescine amidase [Desulfovibrio sp. A2]	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf12293g01002.1	sp|Q9LT23|BH121_ARATH	***-	Transcription factor bHLH121	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00551g04014.1	sp|Q6CJL0|SNF7_KLULA	--**	Vacuolar-sorting protein SNF7	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf00119g05011.1	sp|O13973|MRP10_SCHPO	-**-	37S ribosomal protein mrp10, mitochondrial	IPR009069 (Cysteine alpha-hairpin motif superfamily)	
Niben101Scf06782g02003.1	sp|Q9MA75|VIP1_ARATH	****	Transcription factor VIP1	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02045g05028.1	sp|Q2SMS4|METE_HAHCH	*-**	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	IPR002629 (Cobalamin-independent methionine synthase MetE, C-terminal/archaeal), IPR002885 (Pentatricopeptide repeat)	GO:0003871 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity), GO:0008270 (zinc ion binding), GO:0009086 (methionine biosynthetic process)
Niben101Scf02992g03028.1	sp|Q5H8A4|PIGG_HUMAN	*-*-	GPI ethanolamine phosphate transferase 2	IPR002591 (Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00151g10023.1			Unknown protein		
Niben101Scf12928g00002.1	AT1G47380.1	***-	Protein phosphatase 2C family protein LENGTH=428	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf00327g01035.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04006g01026.1	AT2G35920.1	*-*-	RNA helicase family protein LENGTH=995		
Niben101Scf03743g00007.1	sp|Q38831|IAA13_ARATH	***-	Auxin-responsive protein IAA13	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf00152g25012.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]		
Niben101Scf05588g13020.1	sp|Q8VYI9|NLTL5_ARATH	****	Non-specific lipid-transfer protein-like protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf05468g03005.1	AT2G41500.1	*-*-	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related LENGTH=554	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf03224g00016.1	AT2G24530.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=407	IPR024738 (Transcriptional coactivator Hfi1/Transcriptional adapter 1)	GO:0070461 (SAGA-type complex)
Niben101Scf07105g00001.1	AT2G27230.1	*-*-	transcription factor-related LENGTH=650	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf00536g04004.1	sp|Q9FIE3|VIN3_ARATH	*-*-	Protein VERNALIZATION INSENSITIVE 3		
Niben101Scf02989g01029.1	sp|Q84W80|FBL42_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00240g00012.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf26646g00003.1	AT3G42725.1	***-	Putative membrane lipoprotein LENGTH=202	IPR023298 (P-type ATPase,  transmembrane domain)	
Niben101Scf08233g00003.1	AT2G26590.1	***-	regulatory particle non-ATPase 13 LENGTH=300	IPR006773 (26S proteasome complex ubiquitin receptor, subunit Rpn13)	GO:0005634 (nucleus), GO:0005737 (cytoplasm)
Niben101Scf11159g00002.1	sp|Q7Y667|YCF2_CALFG	--*-	Protein Ycf2		
Niben101Scf00863g07020.1	sp|Q9SIT7|PP151_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00593g04019.1	sp|A0KN18|ASTD_AERHH	*-*-	N-succinylglutamate 5-semialdehyde dehydrogenase	IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf04099g08003.1	sp|Q9FFI5|NAC86_ARATH	*-*-	NAC domain-containing protein 86	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03737g02009.1	sp|P81834|TL16_SPIOL	--*-	Thylakoid lumenal 13.3 kDa protein		
Niben101Scf04554g01003.1	sp|Q9SFC6|GDIR_ARATH	*-*-	Rho GDP-dissociation inhibitor 1	IPR024792 (Rho GDP-dissociation inhibitor domain)	
Niben101Scf11588g00024.1	sp|Q42059|GUN6_ARATH	***-	Endoglucanase 6	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like), IPR019028 (Carbohydrate binding domain CBM49)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf08002g02002.1	sp|Q9LF33|UGDH3_ARATH	****	UDP-glucose 6-dehydrogenase 3	IPR017476 (UDP-glucose/GDP-mannose dehydrogenase)	GO:0003979 (UDP-glucose 6-dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01718g01006.1	AT2G16920.1	***-	ubiquitin-conjugating enzyme 23 LENGTH=1102	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf02853g04001.1	sp|P79398|IF4G2_RABIT	*-*-	Eukaryotic translation initiation factor 4 gamma 2	IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf07474g00005.1	sp|P70122|SBDS_MOUSE	****	Ribosome maturation protein SBDS	IPR002140 (Ribosome maturation protein SBDS)	GO:0042254 (ribosome biogenesis)
Niben101Scf03352g03004.1	ref|XP_002509626.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF51013.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03753g00013.1			Unknown protein		
Niben101Scf05997g00009.1	sp|P0CZ26|ECFA2_STRP3	****	Energy-coupling factor transporter ATP-binding protein EcfA2	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf02525g03015.1	sp|Q556Y4|KC1_DICDI	****	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00854g05029.1			Unknown protein		
Niben101Scf01409g12028.1	sp|Q49YV3|PUR8_STAS1	****	Adenylosuccinate lyase	IPR000362 (Fumarate lyase family), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0004018 (N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity), GO:0006188 (IMP biosynthetic process), GO:0009152 (purine ribonucleotide biosynthetic process)
Niben101Scf00522g01022.1	AT1G25330.1	*-*-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=223		
Niben101Scf03456g00002.1	sp|P42696|RBM34_HUMAN	--**	RNA-binding protein 34	IPR002075 (Nuclear transport factor 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf04412g00018.1	sp|B7L0R8|RL16_METC4	***-	50S ribosomal protein L16	IPR000114 (Ribosomal protein L16), IPR001351 (Ribosomal protein S3, C-terminal), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf00960g09001.1			Unknown protein		
Niben101Scf05391g03013.1	sp|P29463|TPT_SOLTU	***-	Triose phosphate/phosphate translocator, chloroplastic	IPR004696 (Triose phosphate/phosphoenolpyruvate translocator), IPR004853 (Triose-phosphate transporter domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf02929g02030.1	sp|Q6KHS3|RS12_MYCMO	*-*-	30S ribosomal protein S12	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain), IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf04657g07014.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf05201g02019.1	sp|Q6CFJ0|FIS1_YARLI	*-**	Mitochondria fission 1 protein	IPR016543 (Mitochondria fission 1 protein), IPR028058 (Fis1, N-terminal tetratricopeptide repeat), IPR028061 (Fis1, C-terminal tetratricopeptide repeat)	GO:0000266 (mitochondrial fission), GO:0005515 (protein binding)
Niben101Scf07508g08001.1	ref|WP_016948830.1|	***-	carotene isomerase [Anabaena sp. PCC 7108]		
Niben101Scf04103g11015.1	sp|Q6FF50|RLMB_ACIAD	*-**	23S rRNA (guanosine-2'-O-)-methyltransferase RlmB	IPR029028 (Alpha/beta knot methyltransferases), IPR029064 (50S ribosomal protein L30e-like)	GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0008168 (methyltransferase activity), GO:0008173 (RNA methyltransferase activity)
Niben101Scf01574g09006.1	sp|A6MMF4|RPOA_CHLSC	*-**	DNA-directed RNA polymerase subunit alpha	IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain), IPR011262 (DNA-directed RNA polymerase, insert domain)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf24861g00011.1	ref|XP_007041405.1|	*-*-	RING/U-box superfamily protein isoform 4 [Theobroma cacao] gb|EOX97236.1| RING/U-box superfamily protein isoform 4 [Theobroma cacao]		
Niben101Scf02830g02021.1			Unknown protein		
Niben101Scf02425g00012.1	sp|Q5XEM9|ALFL5_ARATH	***-	PHD finger protein ALFIN-LIKE 5	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR021998 (Alfin)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0042393 (histone binding)
Niben101Scf06848g03001.1	sp|Q9LJR7|XTH3_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 3	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf02374g00010.1	sp|Q5HPT1|ISPT_STAEQ	****	Isoprenyl transferase	IPR001229 (Jacalin-like lectin domain), IPR001441 (Decaprenyl diphosphate synthase-like)	GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf00447g03001.1	sp|P42776|GBF3_ARATH	****	G-box-binding factor 3	IPR004827 (Basic-leucine zipper domain), IPR012900 (G-box binding, MFMR)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03202g10002.1	sp|Q5VTL8|PR38B_HUMAN	*-*-	Pre-mRNA-splicing factor 38B	IPR005037 (Pre-mRNA-splicing factor 38), IPR024767 (Pre-mRNA-splicing factor 38, C-terminal)	
Niben101Scf14133g00006.1	sp|Q9LK50|AB26G_ARATH	*-*-	ABC transporter G family member 26		
Niben101Scf06430g00004.1	AT1G05460.1	*-*-	P-loop containing nucleoside triphosphate hydrolases superfamily protein LENGTH=1002	IPR026127 (Probable RNA helicase SDE3), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02299g02002.1	dbj|BAF97641.1|	*-*-	agmatine coumaroyltransferase [Triticum aestivum]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01970g08013.1	sp|Q186F8|THIE_PEPD6	*-**	Thiamine-phosphate synthase	IPR003733 (Thiamine phosphate synthase), IPR029056 (Ribokinase-like)	GO:0003824 (catalytic activity), GO:0004789 (thiamine-phosphate diphosphorylase activity), GO:0009228 (thiamine biosynthetic process)
Niben101Scf08801g00004.1			Unknown protein		
Niben101Scf03755g00006.1	sp|O82632|GATA9_ARATH	****	GATA transcription factor 9	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03332g02010.1	ref|XP_007014955.1|	*-*-	Far1-related sequence 4 isoform 3 [Theobroma cacao] gb|EOY32574.1| Far1-related sequence 4 isoform 3 [Theobroma cacao]	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf01691g01013.1	sp|O23081|CRK41_ARATH	*-**	Cysteine-rich receptor-like protein kinase 41	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09847g00006.1	sp|Q9M276|ATB12_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-12	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008289 (lipid binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00953g05005.1	AT2G14620.1	****	xyloglucan endotransglucosylase/hydrolase 10 LENGTH=299	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08084g00002.1	sp|Q9SB81|PER42_ARATH	****	Peroxidase 42	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf16416g00010.1	AT2G39570.1	***-	ACT domain-containing protein LENGTH=411		
Niben101Scf03786g04017.1			Unknown protein		
Niben101Scf05341g04002.1	sp|Q8RX71|BAG4_ARATH	****	BAG family molecular chaperone regulator 4	IPR003103 (BAG domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf02339g01017.1	AT3G22970.1	***-	Protein of unknown function (DUF506) LENGTH=370	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf02513g01006.1	sp|Q9FY75|POT7_ARATH	****	Potassium transporter 7	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf13230g00002.1	AT4G32400.1	***-	Mitochondrial substrate carrier family protein LENGTH=392	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf03985g02025.1	AT5G41790.1	*-*-	COP1-interactive protein 1 LENGTH=1586		
Niben101Scf02475g08015.1	ref|NP_001060667.1|	*-*-	product [Oryza sativa Japonica Group]	IPR000772 (Ricin B lectin domain)	
Niben101Scf05811g08006.1	AT2G29050.1	***-	RHOMBOID-like 1 LENGTH=389	IPR002610 (Peptidase S54, rhomboid)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf03856g03010.1	sp|Q40519|PSBR_TOBAC	****	Photosystem II 10 kDa polypeptide, chloroplastic	IPR006814 (Photosystem II PsbR)	GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0042651 (thylakoid membrane)
Niben101Scf04881g01002.1	sp|Q9SI37|WRKY1_ARATH	--**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06172g02016.1	sp|Q9GKX6|GALM_PIG	*-*-	Aldose 1-epimerase	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf06769g04010.1	sp|Q9LDR4|ERG24_ARATH	***-	Delta(14)-sterol reductase	IPR001171 (Ergosterol biosynthesis ERG4/ERG24)	GO:0016020 (membrane)
Niben101Scf02262g02010.1	sp|Q86K94|TPPC3_DICDI	***-	Trafficking protein particle complex subunit 3	IPR007194 (Transport protein particle (TRAPP) component), IPR024096 (NO signalling/Golgi transport  ligand-binding domain)	
Niben101Ctg10156g00002.1	sp|O04887|PME2_CITSI	*-**	Pectinesterase 2	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf03189g04009.1			Unknown protein		
Niben101Scf03817g04007.1	sp|P93011|PP182_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf08015g03004.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf06594g00001.1			Unknown protein		
Niben101Scf00369g24006.1	sp|Q0P5I6|PR38A_BOVIN	*-*-	Pre-mRNA-splicing factor 38A	IPR005037 (Pre-mRNA-splicing factor 38), IPR024767 (Pre-mRNA-splicing factor 38, C-terminal)	
Niben101Scf04196g03002.1	ref|WP_015226009.1|	*-**	rib PSRP-3/Ycf65 [Halothece sp. PCC 7418]	IPR006924 (Ribosomal protein PSRP-3/Ycf65)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02056g03006.1	emb|CDY48761.1|	***-	BnaA02g30220D [Brassica napus]		
Niben101Scf03036g07024.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00109g02010.1	AT3G02030.1	****	transferases, transferring acyl groups other than amino-acyl groups;acyltransferases LENGTH=662	IPR007130 (Diacylglycerol acyltransferase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03634g11004.1	sp|Q66GR0|FLA17_ARATH	***-	Fasciclin-like arabinogalactan protein 17	IPR000782 (FAS1 domain)	
Niben101Scf01406g02008.1	AT5G05830.1	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=204	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf11899g01001.1	sp|Q5R830|XYLB_PONAB	*-*-	Xylulose kinase	IPR018485 (Carbohydrate kinase, FGGY, C-terminal)	GO:0005975 (carbohydrate metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00917g01016.1	sp|Q9FXJ1|GDL6_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01236g03008.1	emb|CAP66277.1|	***-	NBS-LRR disease resistance protein [Musa balbisiana]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf07442g01021.1			Unknown protein		
Niben101Scf04082g01003.1	sp|P42815|RNS3_ARATH	****	Ribonuclease 3	IPR001568 (Ribonuclease T2-like)	GO:0003723 (RNA binding), GO:0033897 (ribonuclease T2 activity)
Niben101Scf07532g02022.1	AT2G41090.1	****	Calcium-binding EF-hand family protein LENGTH=191	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf05519g02006.1	sp|O49508|FB237_ARATH	***-	F-box protein		
Niben101Scf05206g06007.1	sp|P0DG48|SYM_STRP3	*-**	Methionine--tRNA ligase	IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR015413 (Methionyl/Leucyl tRNA synthetase)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation)
Niben101Scf01340g02004.1	sp|A5UST8|RS16_ROSS1	--*-	30S ribosomal protein S16	IPR023803 (Ribosomal protein S16 domain)	
Niben101Scf24322g00012.1	emb|CDY07628.1|	*-*-	BnaA03g18830D [Brassica napus]		
Niben101Scf00481g02011.1	sp|Q9M1K2|PI5K4_ARATH	****	Phosphatidylinositol 4-phosphate 5-kinase 4	IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf00414g08001.1	AT5G55950.1	***-	Nucleotide/sugar transporter family protein LENGTH=398	IPR004853 (Triose-phosphate transporter domain), IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf00558g00005.1	ref|XP_007050880.1|	****	ATP binding protein, putative isoform 2 [Theobroma cacao] gb|EOX95037.1| ATP binding protein, putative isoform 2 [Theobroma cacao]	IPR003959 (ATPase, AAA-type, core), IPR008984 (SMAD/FHA domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf12127g00002.1	AT3G10040.1	***-	sequence-specific DNA binding transcription factors LENGTH=431		
Niben101Scf01543g05001.1	sp|Q5JMH0|HAK6_ORYSJ	****	Potassium transporter 6	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf01653g02022.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf06493g01012.1	gb|AES77743.2|	****	DSBA oxidoreductase family protein [Medicago truncatula]	IPR001853 (DSBA-like thioredoxin domain), IPR012336 (Thioredoxin-like fold)	GO:0015035 (protein disulfide oxidoreductase activity)
Niben101Scf00167g01010.1	ref|NP_001045237.1|	*-*-	product [Oryza sativa Japonica Group]	IPR021775 (Protein of unknown function DUF3339)	
Niben101Scf00870g17016.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01326g10016.1	ref|WP_028134398.1|	***-	ATP synthase subunit beta [Bradyrhizobium japonicum]	IPR003788 (Putative S-adenosyl-L-methionine-dependent methyltransferase MidA), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00024g04004.1			Unknown protein		
Niben101Scf13703g00003.1	sp|P15252|REF_HEVBR	*-*-	Rubber elongation factor protein	IPR008802 (Rubber elongation factor)	
Niben101Scf06117g04008.1	sp|Q8DG60|PSB27_THEEB	*-**	Photosystem II lipoprotein Psb27	IPR025585 (Photosystem II Pbs27)	GO:0010207 (photosystem II assembly)
Niben101Scf06814g00001.1	sp|P29375|KDM5A_HUMAN	*-*-	Lysine-specific demethylase 5A	IPR003347 (JmjC domain), IPR003349 (JmjN domain), IPR004198 (Zinc finger, C5HC2-type)	
Niben101Scf01150g04004.1	sp|Q30ZN0|F16PA_DESAG	****	Fructose-1,6-bisphosphatase class 1	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf00254g02011.1	AT4G23500.1	*-*-	Pectin lyase-like superfamily protein LENGTH=495	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00457g07012.1	sp|Q50940|CAH_NEIGO	***-	Carbonic anhydrase	IPR001148 (Alpha carbonic anhydrase), IPR023561 (Carbonic anhydrase, alpha-class)	GO:0004089 (carbonate dehydratase activity), GO:0006730 (one-carbon metabolic process), GO:0008270 (zinc ion binding)
Niben101Scf01888g02004.1	AT1G21651.1	*-**	zinc ion binding LENGTH=811	IPR011009 (Protein kinase-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0008270 (zinc ion binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02621g02022.1	AT5G35220.1	***-	Peptidase M50 family protein LENGTH=548		
Niben101Scf00436g02005.1	emb|CDX71022.1|	***-	BnaC03g11060D [Brassica napus]	IPR012862 (Protein of unknown function DUF1635)	
Niben101Scf03595g15001.1			Unknown protein		
Niben101Scf01215g01009.1	AT5G15170.1	****	tyrosyl-DNA phosphodiesterase-related LENGTH=605	IPR008984 (SMAD/FHA domain), IPR010347 (Tyrosyl-DNA phosphodiesterase I), IPR027415 (Tyrosyl-DNA phosphodiesterase C-terminal domain)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Scf03104g00009.1	sp|Q9LUG5|RPF2_ARATH	***-	Ribosome production factor 2 homolog	IPR007109 (Brix domain)	
Niben101Scf02929g05008.1	ref|XP_003628497.1|	*-*-	NADH dehydrogenase subunit F [Medicago truncatula] gb|AET02973.1| NADH-ubiquinone oxidoreductase (complex I), chain 5 [Medicago truncatula]		
Niben101Scf06578g02001.1	AT4G12490.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=182	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf07399g00027.1	sp|Q9SJY5|PUMP5_ARATH	****	Mitochondrial uncoupling protein 5	IPR002030 (Mitochondrial brown fat uncoupling protein), IPR023395 (Mitochondrial carrier domain)	GO:0006839 (mitochondrial transport), GO:0031966 (mitochondrial membrane)
Niben101Scf07437g05005.1	AT1G70170.1	****	matrix metalloproteinase LENGTH=378	IPR021190 (Peptidase M10A), IPR024079 (Metallopeptidase, catalytic domain)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity), GO:0008270 (zinc ion binding), GO:0031012 (extracellular matrix)
Niben101Scf07743g00008.1	sp|I1N462|SBT1_SOYBN	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf07182g02009.1	sp|P57529|RECB_BUCAI	--*-	RecBCD enzyme subunit RecB		
Niben101Scf07466g02003.1	gb|KEH33525.1|	*-*-	late embryogenesis abundant protein [Medicago truncatula]	IPR004864 (Late embryogenesis abundant protein, LEA-14), IPR013783 (Immunoglobulin-like fold)	
Niben101Scf01119g02001.1	sp|B8CX96|MIAA_HALOH	****	tRNA dimethylallyltransferase	IPR002627 (tRNA isopentenyltransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf00187g02027.1	sp|Q7XHI9|BH084_ARATH	***-	Transcription factor bHLH84	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02223g04004.1	ref|XP_007033350.1|	*-*-	Decapping 5, putative isoform 4 [Theobroma cacao] gb|EOY04276.1| Decapping 5, putative isoform 4 [Theobroma cacao]	IPR010920 (Like-Sm (LSM) domain), IPR019050 (FDF domain), IPR025762 (DFDF domain), IPR025768 (TFG box)	
Niben101Scf06569g01022.1	sp|Q9FJP9|SDHB3_ARATH	****	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial	IPR004489 (Succinate dehydrogenase/fumarate reductase iron-sulphur protein), IPR009051 (Alpha-helical ferredoxin), IPR012675 (Beta-grasp domain), IPR017896 (4Fe-4S ferredoxin-type, iron-sulphur binding domain)	GO:0006099 (tricarboxylic acid cycle), GO:0009055 (electron carrier activity), GO:0016491 (oxidoreductase activity), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06909g04006.1	sp|Q9SHB5|WRK55_ARATH	*-**	WRKY transcription factor 55	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00849g01019.1	sp|Q9ZZ45|NU4M_SQUAC	*-*-	NADH-ubiquinone oxidoreductase chain 4	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf04781g00007.1	gb|AEE81066.1|	****	ubiquitin-protein ligase/zinc ion binding protein [Triticum aestivum]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02074g04035.1			Unknown protein		
Niben101Scf00438g00021.1			Unknown protein		
Niben101Scf09773g01013.1	sp|Q9FFY9|TRP4_ARATH	****	Telomere repeat-binding protein 4	IPR009057 (Homeodomain-like), IPR029071 (Ubiquitin-related domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf03229g01012.1			Unknown protein		
Niben101Scf01529g02004.1	AT1G11260.1	****	sugar transporter 1 LENGTH=522	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf08142g00022.1	sp|D1BZ82|MSHA_XYLCX	***-	D-inositol 3-phosphate glycosyltransferase	IPR001296 (Glycosyl transferase, family 1), IPR028098 (Glycosyltransferase subfamily 4, N-terminal domain)	GO:0009058 (biosynthetic process)
Niben101Scf17730g00013.1	sp|Q8H038|KATAM_ORYSJ	***-	Xyloglucan galactosyltransferase KATAMARI1 homolog	IPR004263 (Exostosin-like)	
Niben101Scf01230g01010.1			Unknown protein		
Niben101Scf00646g08005.1	ref|XP_002523767.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF38616.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02718g00003.1			Unknown protein		
Niben101Scf03036g03011.1	gb|AFW72502.1|	***-	survival motor neuron containing protein [Zea mays]	IPR007022 (Gem-associated protein 2)	GO:0000387 (spliceosomal snRNP assembly), GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf00920g01005.1	ref|WP_026795975.1|	--*-	MULTISPECIES: hypothetical protein [Planktothrix]		
Niben101Scf00203g00011.1	AT1G23790.1	*-*-	Plant protein of unknown function (DUF936) LENGTH=518	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Scf07465g01009.1	AT4G38900.1	****	Basic-leucine zipper (bZIP) transcription factor family protein LENGTH=553	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01406g00004.1	emb|CDY45449.1|	*-*-	BnaA05g12520D [Brassica napus]	IPR021916 (Protein of unknown function DUF3527)	
Niben101Scf00709g02007.1	sp|Q9SZE7|PER51_ARATH	****	Peroxidase 51	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04840g01018.1	sp|Q15139|KPCD1_HUMAN	*-**	Serine/threonine-protein kinase D1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04736g00006.1	gb|AEW48196.1|	*-*-	disease resistance protein RGH7 [Solanum chacoense]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf05216g09024.1			Unknown protein		
Niben101Scf04786g00012.1	sp|Q84WS8|U1125_ARATH	--*-	U11/U12 small nuclear ribonucleoprotein 25 kDa protein	IPR029071 (Ubiquitin-related domain)	
Niben101Scf01212g02010.1	sp|Q9FJ40|GDL86_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02215g05019.1	sp|Q9ZUU3|PP190_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01881g02014.1	AT2G13560.1	*-**	NAD-dependent malic enzyme 1 LENGTH=623	IPR016040 (NAD(P)-binding domain)	GO:0004471 (malate dehydrogenase (decarboxylating) (NAD+) activity), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01795g14003.1	sp|Q2YCH6|GCH4_NITMU	--*-	GTP cyclohydrolase FolE2		
Niben101Scf08755g02028.1	sp|Q9LFC5|PP360_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00332g01013.1	sp|Q84LH3|WEX_ARATH	*-**	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf03644g03012.1	ref|XP_002510978.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF51580.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09597g03004.1	ref|NP_001066512.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf01068g01003.1	AT2G31010.1	****	Protein kinase superfamily protein LENGTH=775	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09355g03006.1	sp|Q9XGI7|NAS_SOLLC	****	Nicotianamine synthase	IPR004298 (Nicotianamine synthase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0030410 (nicotianamine synthase activity), GO:0030418 (nicotianamine biosynthetic process)
Niben101Scf05750g03023.1	AT5G63390.1	*-*-	O-fucosyltransferase family protein LENGTH=559	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf25772g00001.1	AT1G29500.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03266g01002.1	ref|XP_002521147.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF41298.1| conserved hypothetical protein [Ricinus communis]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf06518g00010.1	sp|Q9C652|RBP1_ARATH	*-**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Ctg07707g00002.1	sp|Q7Z2K6|ERMP1_HUMAN	*-*-	Endoplasmic reticulum metallopeptidase 1	IPR007484 (Peptidase M28)	
Niben101Scf25279g00004.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05536g01006.1			Unknown protein		
Niben101Scf00317g07015.1	gb|AAM47025.1|	*-*-	nam-like protein 1 [Petunia x hybrida]		
Niben101Scf11232g00025.1	sp|Q9C5X9|HAC1_ARATH	*-**	Histone acetyltransferase HAC1	IPR000197 (Zinc finger, TAZ-type), IPR000433 (Zinc finger, ZZ-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013178 (Histone H3-K56 acetyltransferase, RTT109)	GO:0003712 (transcription cofactor activity), GO:0004402 (histone acetyltransferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf09554g00002.1	sp|Q96K83|ZN521_HUMAN	*-*-	Zinc finger protein 521	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01983g04020.1	AT1G53510.1	****	mitogen-activated protein kinase 18 LENGTH=615	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11721g00002.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021820 (S-locus receptor kinase, C-terminal), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf04006g01029.1	sp|P42814|RNS2_ARATH	*-**	Ribonuclease 2	IPR001568 (Ribonuclease T2-like)	GO:0003723 (RNA binding), GO:0033897 (ribonuclease T2 activity)
Niben101Scf01797g02013.1	sp|Q9LQV2|RDR1_ARATH	*-**	RNA-dependent RNA polymerase 1	IPR007855 (RNA-dependent RNA polymerase, eukaryotic-type)	GO:0003968 (RNA-directed RNA polymerase activity)
Niben101Scf05491g07011.1	AT2G12190.1	*-*-	Cytochrome P450 superfamily protein LENGTH=512		
Niben101Scf32746g01018.1	sp|Q96AY4|TTC28_HUMAN	*-*-	Tetratricopeptide repeat protein 28	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00447g03005.1	sp|Q9M153|GDL61_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf16691g00007.1	ref|XP_002533670.1|	*-**	Inner membrane transport protein yjjL, putative [Ricinus communis] gb|EEF28716.1| Inner membrane transport protein yjjL, putative [Ricinus communis]	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf05799g01005.1	sp|Q9NRZ5|PLCD_HUMAN	--*-	1-acyl-sn-glycerol-3-phosphate acyltransferase delta		
Niben101Scf00854g02035.1			Unknown protein		
Niben101Scf02499g02004.1	sp|Q5ZMM5|ZN706_CHICK	--*-	Zinc finger protein 706	IPR026939 (At2g23090 like)	
Niben101Scf12762g00003.1			Unknown protein		
Niben101Scf02625g06017.1	sp|G5EGA6|DHRS4_CAEEL	****	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf00165g00014.1	sp|Q9H0G5|NSRP1_HUMAN	*-*-	Nuclear speckle splicing regulatory protein 1	IPR018612 (Domain of unknown function DUF2040)	
Niben101Scf03031g01005.1	AT2G27385.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=173	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf03735g04007.1	AT4G34760.1	***-	SAUR-like auxin-responsive protein family LENGTH=107	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf09906g00008.1	sp|P98204|ALA1_ARATH	****	Phospholipid-transporting ATPase 1	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf00683g03024.1	sp|Q2U0M4|PAN3_ASPOR	--*-	PAB-dependent poly(A)-specific ribonuclease subunit pan3		
Niben101Scf08523g00030.1	ref|XP_003603443.1|	***-	EG45-like domain containing protein [Medicago truncatula]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf01607g01010.1	sp|Q58DW6|RAB25_BOVIN	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf01785g10024.1	emb|CDY10202.1|	*-*-	BnaC05g04450D [Brassica napus]		
Niben101Scf00167g00014.1	sp|P57758|CTNS_ARATH	***-	Cystinosin homolog	IPR005282 (Lysosomal cystine transporter)	
Niben101Scf04323g04023.1	sp|P46301|RS25_SOLLC	***-	40S ribosomal protein S25	IPR004977 (Ribosomal protein S25)	
Niben101Scf08755g01007.1	sp|Q8SRB2|DBP2_ENCCU	*-**	ATP-dependent RNA helicase DBP2	IPR011545 (DEAD/DEAH box helicase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf03600g03020.1	AT3G27260.1	*-*-	global transcription factor group E8 LENGTH=813		
Niben101Scf02793g17007.1	AT3G54360.1	****	zinc ion binding LENGTH=405	IPR011990 (Tetratricopeptide-like helical domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01634g02036.1	sp|Q8LAS8|SFGH_ARATH	****	S-formylglutathione hydrolase	IPR000801 (Putative esterase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0018738 (S-formylglutathione hydrolase activity), GO:0046294 (formaldehyde catabolic process)
Niben101Scf04114g02041.1			Unknown protein		
Niben101Ctg13998g00002.1	sp|P42327|ADH2_GEOSE	***-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00066g02010.1	AT5G59480.1	****	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=282	IPR006439 (HAD hydrolase, subfamily IA), IPR010237 (Pyrimidine 5-nucleotidase), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf09801g02012.1	gb|AEM24937.1|	***-	thionin-like protein [Nicotiana tabacum]		
Niben101Scf05201g02014.1	gb|AID21636.1|	--*-	At4g21420p-like protein [Arabidopsis lyrata]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf05434g02033.1	sp|Q760T4|RBS_PYRYE	--*-	Ribulose bisphosphate carboxylase small chain	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf02680g01004.1	sp|Q94KB7|MLO6_ARATH	*-*-	MLO-like protein 6	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf01236g05002.1	AT1G48110.1	***-	evolutionarily conserved C-terminal region 7 LENGTH=639	IPR007275 (YTH domain)	
Niben101Scf01078g00027.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR002902 (Gnk2-homologous domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08033g00011.1	AT3G18210.1	*-*-	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=394		
Niben101Scf06077g04013.1	sp|Q9ASU1|DGAT2_ARATH	***-	Diacylglycerol O-acyltransferase 2	IPR007130 (Diacylglycerol acyltransferase)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03714g02005.1	AT5G22580.1	***-	Stress responsive A/B Barrel Domain LENGTH=111	IPR011008 (Dimeric alpha-beta barrel)	
Niben101Scf00305g00001.1	sp|Q9ZPW7|ZHD6_ARATH	***-	Zinc-finger homeodomain protein 6	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf06628g00007.1	sp|P07506|COX1_SOYBN	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00338g01009.1	sp|Q8T2T7|TOP3_DICDI	*-**	DNA topoisomerase 3	IPR000380 (DNA topoisomerase, type IA), IPR023405 (DNA topoisomerase, type IA, core domain)	GO:0003677 (DNA binding), GO:0003916 (DNA topoisomerase activity), GO:0003917 (DNA topoisomerase type I activity), GO:0006265 (DNA topological change)
Niben101Scf04419g02002.1	emb|CDX96993.1|	*-*-	BnaC09g46320D [Brassica napus]		
Niben101Scf01696g06057.1	ref|NP_194719.1|	*-**	calcium-transporting ATPase 10 [Arabidopsis thaliana] RecName: Full=Calcium-transporting ATPase 10, plasma membrane-type; AltName: Full=Ca(2+)-ATPase isoform 10 [Arabidopsis thaliana] emb|CAB79748.1| Ca2+-transporting ATPase-like protein [Arabidopsis thaliana] gb|AEE85690.1| calcium-transporting ATPase 10 [Arabidopsis thaliana]	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0016021 (integral component of membrane)
Niben101Scf01221g17003.1	AT2G33255.1	***-	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=245	IPR023214 (HAD-like domain)	
Niben101Scf03900g00001.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf03817g09001.1	sp|Q8GXU9|FAF2_ARATH	*-*-	Protein FANTASTIC FOUR 2	IPR021410 (The fantastic four family)	
Niben101Scf10086g00004.1	AT1G43710.1	*-**	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein LENGTH=482	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf04187g02004.1	sp|Q9SI52|P4KG7_ARATH	***-	Phosphatidylinositol 4-kinase gamma 7	IPR000403 (Phosphatidylinositol 3-/4-kinase, catalytic domain)	GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf01370g00002.1	sp|Q9MUK5|TOC64_PEA	*-*-	Translocon at the outer membrane of chloroplasts 64	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf06653g00006.1	sp|Q84LH3|WEX_ARATH	*-**	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf09211g00003.1	sp|O04714|GCR1_ARATH	*-*-	G-protein coupled receptor 1	IPR022343 (GCR1-cAMP receptor)	
Niben101Scf01888g06003.1	AT4G01870.1	*-*-	tolB protein-related LENGTH=652	IPR011659 (WD40-like Beta Propeller), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01752g05003.1	sp|Q9SXS8|ERF3_TOBAC	****	Ethylene-responsive transcription factor 3	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02093g05012.1	ref|WP_032118911.1|	****	RNA methyltransferase [Clostridium sp. CL-2]	IPR004538 (Haemolysin A), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf05750g04010.1	sp|Q8PV45|RL22_METMA	****	50S ribosomal protein L22	IPR001063 (Ribosomal protein L22/L17)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf17572g00011.1	AT5G19420.2	*-*-	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain LENGTH=1139	IPR013591 (Brevis radix (BRX) domain)	
Niben101Scf00883g15029.1	sp|Q79665|GAG_HV1MV	--*-	Gag polyprotein	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf10442g00016.1	AT2G07739.1	***-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf08870g00006.1			Unknown protein		
Niben101Scf04629g01005.1	sp|Q9LFB8|PTR5_ARATH	***-	Protein NRT1/ PTR FAMILY 8.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf01395g00005.1	sp|Q8L7G3|CRK7_ARATH	*-**	Cysteine-rich receptor-like protein kinase 7	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00573g03002.1	sp|Q9LSW7|ACCH9_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 9	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00606g00009.1	sp|Q9SCV9|BGAL3_ARATH	***-	Beta-galactosidase 3	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf04406g08003.1	emb|CDX90086.1|	***-	BnaA08g18980D [Brassica napus]		
Niben101Scf00953g01017.1	sp|Q9ZQR4|Y2452_ARATH	***-	DUF21 domain-containing protein	IPR002550 (Domain of unknown function DUF21)	
Niben101Scf00406g06006.1	sp|Q94KB7|MLO6_ARATH	*-*-	MLO-like protein 6	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf02108g01021.1	sp|Q80XC6|NRDE2_MOUSE	***-	Protein NRDE2 homolog	IPR011990 (Tetratricopeptide-like helical domain), IPR013633 (siRNA-mediated silencing protein NRDE-2)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Scf02533g00002.1	sp|A6USA0|RLME_METVS	****	Ribosomal RNA large subunit methyltransferase E	IPR015507 (Ribosomal RNA large subunit methyltransferase E), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0001510 (RNA methylation), GO:0008033 (tRNA processing), GO:0008168 (methyltransferase activity), GO:0008175 (tRNA methyltransferase activity), GO:0032259 (methylation)
Niben101Scf00506g02003.1	sp|P15904|POR_AVESA	****	Protochlorophyllide reductase	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf00483g03002.1			Unknown protein		
Niben101Scf01166g11001.1	sp|A3PMM1|RL25_RHOS1	***-	50S ribosomal protein L25	IPR011035 (Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain), IPR029751 (Ribosomal protein L25)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0008097 (5S rRNA binding)
Niben101Scf02009g00007.1	sp|C5D6U5|MENE_GEOSW	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf05124g00001.1	ref|XP_003627081.1|	***-	Protein CHUP1 [Medicago truncatula] gb|AET01557.1| actin-binding family protein, putative [Medicago truncatula]		
Niben101Scf12789g00027.1	sp|P46629|RAB25_RABIT	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf09938g00013.1	sp|B9T536|TPS10_RICCO	*-**	Terpene synthase 10	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf00971g00012.1	sp|Q9LSW6|ACH10_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 10	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf26225g00005.1	AT5G45470.1	*-*-	Protein of unknown function (DUF594) LENGTH=866	IPR007658 (Protein of unknown function DUF594)	
Niben101Scf01701g07009.1	AT1G19730.1	***-	Thioredoxin superfamily protein LENGTH=119	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02293g02002.1	sp|P29829|GBB2_DROME	*-**	Guanine nucleotide-binding protein subunit beta-2	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf06162g01001.1	sp|A6V4H6|CYSG_PSEA7	*-*-	Siroheme synthase	IPR000878 (Tetrapyrrole methylase)	GO:0006779 (porphyrin-containing compound biosynthetic process), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity), GO:0043115 (precorrin-2 dehydrogenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04560g03023.1	sp|B3LT98|RKM5_YEAS1	--*-	Ribosomal lysine N-methyltransferase 5	IPR019410 (Nicotinamide N-methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Ctg15906g00002.1	sp|Q28141|DHX9_BOVIN	*-*-	ATP-dependent RNA helicase A	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf07741g04008.1	sp|Q8S8U1|YCF2B_ATRBE	*-*-	Protein Ycf2 B		
Niben101Scf14164g00017.1			Unknown protein		
Niben101Scf20034g00013.1	sp|Q2FJM6|IMDH_STAA3	****	Inosine-5'-monophosphate dehydrogenase	IPR005990 (Inosine-5'-monophosphate dehydrogenase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0003938 (IMP dehydrogenase activity), GO:0006164 (purine nucleotide biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02653g04020.1	sp|Q5JTN6|WDR38_HUMAN	*-*-	WD repeat-containing protein 38	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01013g08008.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0043531 (ADP binding)
Niben101Scf05782g00010.1	sp|Q7DM39|PSBP1_TOBAC	****	Oxygen-evolving enhancer protein 2-1, chloroplastic	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf15760g00013.1			Unknown protein		
Niben101Scf20576g01017.1	AT2G27660.1	*-*-	Cysteine/Histidine-rich C1 domain family protein LENGTH=718	IPR011424 (C1-like)	GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05813g04003.1	emb|CDY49841.1|	-**-	BnaC02g44000D [Brassica napus]		
Niben101Scf00148g01023.1	AT5G62360.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=203	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf05367g00005.1	AT1G05150.1	****	Calcium-binding tetratricopeptide family protein LENGTH=808	IPR011990 (Tetratricopeptide-like helical domain), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding)
Niben101Scf00249g01011.1	ref|XP_002529236.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF33149.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01649g04003.1	emb|CDX98828.1|	***-	BnaC09g50070D [Brassica napus]		
Niben101Scf09554g01001.1	gb|ABR25403.1|	****	transferase (transferring glycosyl group) [Oryza sativa Indica Group]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf02407g02007.1	sp|O80513|CCU41_ARATH	****	Cyclin-U4-1	IPR013763 (Cyclin-like), IPR013922 (Cyclin PHO80-like)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0019901 (protein kinase binding)
Niben101Scf03450g02004.1	sp|Q84J50|HS177_ORYSJ	--*-	17.7 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf04083g03013.1	AT5G24314.2	***-	plastid transcriptionally active7 LENGTH=169		
Niben101Scf05222g05007.1	sp|Q27889|PP2B2_DROME	--*-	Serine/threonine-protein phosphatase 2B catalytic subunit 2	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf14394g01012.1	sp|B0BZL2|ATPA1_ACAM1	*-**	ATP synthase subunit alpha 1	IPR001661 (Glycoside hydrolase, family 37), IPR004100 (ATPase, F1 complex alpha/beta subunit, N-terminal domain), IPR023366 (ATP synthase subunit alpha-like domain)	GO:0003824 (catalytic activity), GO:0004555 (alpha,alpha-trehalase activity), GO:0005991 (trehalose metabolic process), GO:0015992 (proton transport), GO:0046034 (ATP metabolic process)
Niben101Scf21658g00002.1	sp|Q3BAM3|PSBE_PHAAO	***-	Cytochrome b559 subunit alpha	IPR006217 (Photosystem II cytochrome b559, alpha subunit)	GO:0009523 (photosystem II), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf09869g01014.1	sp|P55200|KMT2A_MOUSE	*-**	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR003105 (SRA-YDG), IPR003616 (Post-SET domain), IPR007728 (Pre-SET domain), IPR015947 (PUA-like domain), IPR025794 (Histone H3-K9 methyltransferase, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016571 (histone methylation), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0042393 (histone binding)
Niben101Scf01326g08029.1	sp|Q5EA79|GALM_BOVIN	***-	Aldose 1-epimerase	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0019318 (hexose metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf03739g02012.1	sp|Q9CAL2|CRK3_ARATH	*-**	Cysteine-rich receptor-like protein kinase 3	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf15049g00021.1	AT3G54390.1	*-*-	sequence-specific DNA binding transcription factors LENGTH=296		
Niben101Scf02015g00003.1	emb|CDX78780.1|	***-	BnaA03g06920D [Brassica napus]		
Niben101Scf01020g03001.1	sp|Q6EP49|MAD27_ORYSJ	*-*-	MADS-box transcription factor 27	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03870g01016.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01035g02002.1	tpg|DAA59134.1|	*-**	TPA: putative RNA binding domain family protein [Zea mays]	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06788g00019.1	sp|Q9ZVD5|AGO4_ARATH	*-*-	Protein argonaute 4	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf02374g00011.1	AT3G46170.1	*-*-	NAD(P)-binding Rossmann-fold superfamily protein LENGTH=288	IPR016040 (NAD(P)-binding domain)	
Niben101Scf00021g00012.1	sp|Q42510|GNOM_ARATH	*-*-	ARF guanine-nucleotide exchange factor GNOM		
Niben101Scf00168g06013.1	AT2G43940.1	*-**	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=226	IPR008854 (TPMT family)	GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity)
Niben101Scf01519g04003.1	sp|P27980|POL_SIVVG	--*-	Gag-Pol polyprotein	IPR001878 (Zinc finger, CCHC-type), IPR007572 (Uncharacterised protein family Ycf20)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf00389g02016.1	AT2G37730.1	*-*-	Protein of unknown function (DUF604) LENGTH=532	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf05592g00017.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02190g06003.1	sp|Q9Y5Q8|TF3C5_HUMAN	*-*-	General transcription factor 3C polypeptide 5	IPR019136 (Transcription factor IIIC, subunit 5)	
Niben101Scf03059g00011.1	emb|CDY32599.1|	--*-	BnaC03g15670D [Brassica napus]		
Niben101Scf01409g06005.1	sp|Q9FHH8|COL5_ARATH	****	Zinc finger protein CONSTANS-LIKE 5	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf03849g00015.1	ref|NP_001141619.2|	****	MYB transcription factor [Zea mays] gb|ACF86732.2| unknown [Zea mays] gb|ADX60175.1| MYB transcription factor [Zea mays] gb|AFW84573.1| putative MYB DNA-binding domain superfamily protein [Zea mays]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf10283g01010.1	sp|Q9CQE7|ERGI3_MOUSE	***-	Endoplasmic reticulum-Golgi intermediate compartment protein 3	IPR012936 (Endoplasmic reticulum vesicle transporter, C-terminal)	
Niben101Scf00762g00008.1	sp|O74427|URK1_SCHPO	*-*-	Uridine kinase	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02240g02004.1	AT3G45900.1	***-	Ribonuclease P protein subunit P38-related LENGTH=389		
Niben101Scf12414g02007.1	emb|CDY69766.1|	***-	BnaCnng65240D [Brassica napus]	IPR009902 (Protein of unknown function DUF1442), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf04989g03009.1	sp|Q9SIA1|MATE8_ARATH	--*-	MATE efflux family protein 8		
Niben101Scf07925g00022.1	sp|Q68S06|PSAA_PANGI	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf07105g02003.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04528g08003.1	ref|WP_020770041.1|	***-	sodium Bile acid symporter family protein [Lept [Leptospira sp. B5-022]	IPR002657 (Bile acid:sodium symporter/arsenical resistance protein  Acr3)	GO:0016020 (membrane)
Niben101Scf06716g01001.1	sp|Q9SG80|ASD1_ARATH	****	Alpha-L-arabinofuranosidase 1	IPR008979 (Galactose-binding domain-like), IPR010720 (Alpha-L-arabinofuranosidase, C-terminal), IPR017853 (Glycoside hydrolase superfamily)	GO:0046373 (L-arabinose metabolic process), GO:0046556 (alpha-L-arabinofuranosidase activity)
Niben101Scf08573g01001.1	gb|KEH17583.1|	*-*-	transcription factor [Medicago truncatula]		
Niben101Scf05373g00005.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf03952g03002.1	sp|Q7PCJ9|SAT2_PIG	****	Diamine acetyltransferase 2	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf01454g06007.1	AT5G07990.1	*-*-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07242g01001.1	AT3G28740.1	***-	Cytochrome P450 superfamily protein LENGTH=509	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09401g03004.1	AT3G12120.1	***-	fatty acid desaturase 2 LENGTH=383	IPR005804 (Fatty acid desaturase, type 1)	GO:0006629 (lipid metabolic process)
Niben101Scf00211g00023.1	AT2G16630.1	*-*-	Pollen Ole e 1 allergen and extensin family protein LENGTH=359	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf08890g00002.1			Unknown protein		
Niben101Scf08293g00007.1	AT5G51220.1	***-	ubiquinol-cytochrome C chaperone family protein LENGTH=281	IPR021150 (Ubiquinol-cytochrome c chaperone/UPF0174)	
Niben101Scf11123g00024.1	sp|A5ELM2|RL22_BRASB	*-**	50S ribosomal protein L22	IPR001063 (Ribosomal protein L22/L17)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf08304g05026.1	ref|XP_004256178.1|	--*-	DNA-directed RNA polymerase III subunit RPC1, putative [Entamoeba invadens IP1] gb|ELP89407.1| DNA-directed RNA polymerase III subunit RPC1, putative [Entamoeba invadens IP1]		
Niben101Scf06113g03003.1	sp|B0B7R0|DNAJ_CHLT2	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf02085g06008.1	sp|Q9BZL6|KPCD2_HUMAN	*-**	Serine/threonine-protein kinase D2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02156g09007.1	sp|Q9ZTW3|VA721_ARATH	*-**	Vesicle-associated membrane protein 721	IPR001388 (Synaptobrevin)	GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf03734g00002.1	AT3G53130.1	***-	Cytochrome P450 superfamily protein LENGTH=539	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01750g14030.1	sp|Q9SJF3|DCP1_ARATH	*-*-	mRNA-decapping enzyme-like protein	IPR010334 (Dcp1-like decapping), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf02897g01002.1	sp|Q8EUM4|DNAJ_MYCPE	*-*-	Chaperone protein DnaJ	IPR000008 (C2 domain), IPR001623 (DnaJ domain), IPR004179 (Sec63 domain), IPR014756 (Immunoglobulin E-set), IPR027137 (Translocation protein Sec63)	GO:0005515 (protein binding), GO:0008565 (protein transporter activity), GO:0031204 (posttranslational protein targeting to membrane, translocation)
Niben101Scf02107g04006.1	sp|Q6DN52|CBPL_DICDI	--**	Calcium-binding protein L	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf09928g01032.1	sp|Q55721|FBT_SYNY3	***-	Folate-biopterin transporter	IPR004324 (Folate-biopterin transporter), IPR020846 (Major facilitator superfamily domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf05516g03018.1	sp|Q9SFC6|GDIR_ARATH	****	Rho GDP-dissociation inhibitor 1	IPR000406 (RHO protein GDP dissociation inhibitor), IPR014756 (Immunoglobulin E-set)	GO:0005094 (Rho GDP-dissociation inhibitor activity), GO:0005737 (cytoplasm)
Niben101Scf05620g02002.1	sp|O65874|MTF1_PEA	*-*-	MADS-box transcription factor 1	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf04362g07012.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11684g02004.1	ref|XP_003595157.1|	*-**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf04445g03004.1	gb|ABF95707.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf25845g00004.1	ref|XP_002534687.1|	*-*-	NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis] gb|EEF27701.1| NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis]		
Niben101Scf01626g03011.1			Unknown protein		
Niben101Scf06870g00004.1			Unknown protein	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf02207g11011.1	AT5G62940.1	****	Dof-type zinc finger DNA-binding family protein LENGTH=372	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00328g04017.1	AT3G22490.1	***-	Seed maturation protein LENGTH=262	IPR007011 (Seed maturation protein)	
Niben101Scf17652g00006.1	sp|Q1ZXC2|PAP1B_DICDI	*-**	Polyadenylate-binding protein 1-B	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR012921 (Spen paralogue and orthologue SPOC, C-terminal)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06674g05023.1	tpg|DAA61317.1|	***-	TPA: hypothetical protein ZEAMMB73_879621 [Zea mays]	IPR029131 (HAUS augmin-like complex subunit 5)	GO:0051225 (spindle assembly)
Niben101Scf01812g02027.1	sp|Q8VXX4|RFC3_ARATH	****	Replication factor C subunit 3	IPR008921 (DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0006260 (DNA replication)
Niben101Scf08228g04006.1	AT1G08720.1	*-**	Protein kinase superfamily protein LENGTH=933	IPR000270 (Phox/Bem1p), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07638g04008.1	AT4G32390.1	***-	Nucleotide-sugar transporter family protein LENGTH=350	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf00466g03016.1	AT2G16530.1	***-	3-oxo-5-alpha-steroid 4-dehydrogenase family protein LENGTH=343		
Niben101Scf02831g06008.1	sp|P26792|INV1_DAUCA	*-*-	Beta-fructofuranosidase, insoluble isoenzyme 1	IPR001362 (Glycoside hydrolase, family 32), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01249g01006.1	sp|Q06266|TOS4_YEAST	--*-	Protein TOS4		
Niben101Scf05212g01005.1	AT5G49980.1	***-	auxin F-box protein 5 LENGTH=619	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf05824g04004.1	sp|P54772|DCHS_SOLLC	***-	Histidine decarboxylase	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf10381g00006.1	sp|Q8LFJ5|T112A_ARATH	***-	Multifunctional methyltransferase subunit TRM112-like protein	IPR005651 (Uncharacterised protein family UPF0434/Trm112)	
Niben101Scf02927g07001.1	sp|Q9BBU3|PSBA_LOTJA	****	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf01267g00002.1	sp|Q9LPM9|BCAT6_ARATH	****	Branched-chain-amino-acid aminotransferase 6	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0004084 (branched-chain-amino-acid transaminase activity), GO:0008152 (metabolic process), GO:0009081 (branched-chain amino acid metabolic process)
Niben101Scf09696g00024.1	sp|A9ETB7|RS12_SORC5	*-**	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf01220g02011.1	sp|O24554|PLY_ZINVI	*-*-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor)	
Niben101Scf08570g06006.1	ref|XP_002516088.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46090.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00149g08005.1	dbj|BAA76516.1|	-**-	HR7 [Hyoscyamus niger]		
Niben101Scf05111g04005.1			Unknown protein		
Niben101Scf00726g02003.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06548g00001.1	tpg|DAA48790.1|	*-*-	TPA: MTD1 [Zea mays]		
Niben101Scf04918g08001.1	AT5G42895.1	*-*-	ECA1 gametogenesis related family protein LENGTH=122	IPR008502 (Prolamin-like domain)	
Niben101Scf00073g03013.1	sp|Q9FN94|RLK7_ARATH	*-*-	Receptor-like protein kinase	IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005524 (ATP binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00920g09011.1	ref|XP_002521097.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF41248.1| conserved hypothetical protein [Ricinus communis]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf01020g00011.1	sp|P27495|CB24_TOBAC	*-*-	Chlorophyll a-b binding protein 40, chloroplastic	IPR001344 (Chlorophyll A-B binding protein, plant)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf01376g04031.1	sp|Q9SEE4|PIRL_SOLLC	***-	Pirin-like protein	IPR012093 (Pirin), IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf01785g06007.1	sp|O14737|PDCD5_HUMAN	--*-	Programmed cell death protein 5	IPR002836 (PDCD5-related protein)	GO:0003677 (DNA binding)
Niben101Scf00953g03001.1	ref|XP_002524585.1|	--*-	nucleic acid binding protein, putative [Ricinus communis] gb|EEF37793.1| nucleic acid binding protein, putative [Ricinus communis]		
Niben101Scf05516g04013.1	AT3G23380.1	*-*-	ROP-interactive CRIB motif-containing protein 5 LENGTH=193	IPR000095 (CRIB domain)	
Niben101Scf10219g00024.1	AT4G18593.1	***-	dual specificity protein phosphatase-related LENGTH=142	IPR024950 (Dual specificity phosphatase)	
Niben101Ctg04281g00002.1	emb|CAA80358.1|	*-*-	beta-fructofuranosidase [Solanum tuberosum]	IPR013189 (Glycosyl hydrolase family 32, C-terminal)	
Niben101Scf14883g00001.1			Unknown protein		
Niben101Scf01998g08005.1	gb|AIE73237.1|	***-	NAD-dependent epimerase/dehydratase [Synechocystis sp. PCC 6714]	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf02128g00026.1	sp|Q9ZQI8|NLTL2_ARATH	****	Non-specific lipid-transfer protein-like protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf01225g02010.1	AT1G05675.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=453	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02824g02004.1	sp|P44321|3MGA_HAEIN	****	DNA-3-methyladenine glycosylase	IPR005019 (Methyladenine glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0008725 (DNA-3-methyladenine glycosylase activity)
Niben101Scf01165g03001.1			Unknown protein		
Niben101Scf01241g02004.1	sp|Q9ZPS3|DCE4_ARATH	****	Glutamate decarboxylase 4	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004351 (glutamate decarboxylase activity), GO:0006536 (glutamate metabolic process), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03644g01006.1			Unknown protein		
Niben101Scf04568g02011.1	AT2G14960.1	*-*-	Auxin-responsive GH3 family protein LENGTH=590	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf05813g00005.1	sp|C3K1M2|HSCB_PSEFS	--*-	Co-chaperone protein HscB homolog		
Niben101Scf05298g05001.1	AT3G05550.1	***-	Hypoxia-responsive family protein LENGTH=97	IPR007667 (Hypoxia induced protein, domain)	
Niben101Scf00493g00021.1	emb|CDX97532.1|	*-*-	BnaA05g25470D [Brassica napus]		
Niben101Scf04410g07001.1	sp|Q6YYC0|C3H55_ORYSJ	*-*-	Zinc finger CCCH domain-containing protein 55	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf02982g00006.1	sp|Q9Y266|NUDC_HUMAN	*-*-	Nuclear migration protein nudC	IPR008978 (HSP20-like chaperone)	
Niben101Scf04945g03014.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04995g09019.1	sp|Q0JPA4|CCA12_ORYSJ	****	Cyclin-A1-2	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Ctg15473g00004.1	sp|Q8W4F0|DAR1_ARATH	*-*-	Protein DA1-related 1		
Niben101Scf03366g00002.1	sp|Q84TE6|NAC22_ARATH	*-*-	NAC domain-containing protein 21/22	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01185g02003.1	AT5G60680.1	***-	Protein of unknown function, DUF584 LENGTH=163	IPR007608 (Senescence regulator S40)	
Niben101Scf03852g01005.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR015757 (Calcineurin B protein)	GO:0005509 (calcium ion binding)
Niben101Scf05440g06004.1	ref|NP_001054228.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf01230g01011.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR002902 (Gnk2-homologous domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03045g06008.1			Unknown protein		
Niben101Scf09170g00003.1	sp|Q8TCB7|METL6_HUMAN	***-	Methyltransferase-like protein 6	IPR013217 (Methyltransferase type 12), IPR026113 (Methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01143g11003.1	ref|NP_001067105.1|	***-	product [Oryza sativa Japonica Group]	IPR009500 (Protein of unknown function DUF1118)	
Niben101Scf04294g05013.1	emb|CAO03013.1|	***-	nodule inception protein [Medicago truncatula var. truncatula]	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain)	GO:0005515 (protein binding)
Niben101Scf07893g00016.1	emb|CDY18385.1|	*-*-	BnaA04g22020D [Brassica napus]		
Niben101Scf04992g00009.1	sp|Q9SIV2|PSD2A_ARATH	****	26S proteasome non-ATPase regulatory subunit 2 homolog A	IPR016643 (26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit)	GO:0000502 (proteasome complex), GO:0005488 (binding), GO:0030234 (enzyme regulator activity), GO:0042176 (regulation of protein catabolic process)
Niben101Scf27243g00002.1	ref|WP_025929815.1|	***-	cobalt ABC transporter permease [Prochlorococcus sp. scB241_528O2]	IPR003339 (ABC/ECF transporter, transmembrane component)	
Niben101Scf00034g04020.1	sp|Q67YT8|RUS4_ARATH	*-*-	Protein root UVB sensitive 4	IPR006968 (Root UVB sensitive family)	
Niben101Scf06374g00012.1			Unknown protein		
Niben101Scf06570g03017.1	emb|CDY46615.1|	***-	BnaA09g27420D [Brassica napus]		
Niben101Scf00340g06003.1	emb|CCQ71680.1|	*-*-	Ycf1 (chloroplast) [Salvia miltiorrhiza]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf01086g00010.1	gb|AES71102.2|	*-*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf00712g15021.1	sp|Q9S7T8|SPZX_ARATH	***-	Serpin-ZX	IPR000215 (Serpin family), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf01205g05002.1	AT1G19900.1	***-	glyoxal oxidase-related protein LENGTH=548	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR014756 (Immunoglobulin E-set), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf01505g02019.1	sp|Q9SSN0|RHD31_ARATH	*-*-	Protein ROOT HAIR DEFECTIVE 3 homolog 1	IPR008803 (RHD3/Sey1)	
Niben101Scf02803g00009.1	sp|O14343|KLP5_SCHPO	*-**	Kinesin-like protein 5	IPR001752 (Kinesin motor domain), IPR016024 (Armadillo-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf02563g05005.1	AT1G14750.1	***-	Cyclin family protein LENGTH=578	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf07517g00003.1	sp|Q99LX5|MMTA2_MOUSE	***-	Multiple myeloma tumor-associated protein 2 homolog	IPR019315 (Kinase phosphorylation domain)	
Niben101Scf05135g03008.1			Unknown protein		
Niben101Scf01108g01002.1	sp|Q9XHP1|2SS1_SESIN	-**-	2S seed storage protein 1	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02077g08016.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf02074g04033.1			Unknown protein		
Niben101Scf00152g23005.1	sp|Q9FQ03|XRN3_ARATH	*-*-	5'-3' exoribonuclease 3		
Niben101Scf02253g06004.1			Unknown protein		
Niben101Scf08374g05011.1			Unknown protein		
Niben101Scf06164g00009.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf15766g00010.1	sp|Q9FY49|LKHA4_ARATH	*-*-	Leukotriene A-4 hydrolase homolog		
Niben101Scf04862g00010.1	AT3G26400.1	***-	eukaryotic translation initiation factor 4B1 LENGTH=532	IPR010433 (Plant specific eukaryotic initiation factor 4B)	
Niben101Scf16511g00014.1	sp|Q68RU4|YCF2_PANGI	--*-	Protein Ycf2		
Niben101Scf02752g10010.1	sp|Q9FXA3|BH095_ARATH	--*-	Transcription factor bHLH95	IPR002912 (ACT domain), IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0046983 (protein dimerization activity)
Niben101Scf00780g01030.1	AT3G24600.1	***-	Late embryogenesis abundant protein, group 2 LENGTH=506		
Niben101Scf07497g02001.1	AT4G07410.1	***-	Transducin family protein / WD-40 repeat family protein LENGTH=815	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03277g02011.1	emb|CDX78193.1|	***-	BnaA09g33880D [Brassica napus]		
Niben101Scf06223g00005.1	sp|C5D664|ACCA_GEOSW	*-**	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	IPR001095 (Acetyl-CoA carboxylase, alpha subunit), IPR011763 (Acetyl-coenzyme A carboxyltransferase, C-terminal), IPR029045 (ClpP/crotonase-like domain)	GO:0003989 (acetyl-CoA carboxylase activity), GO:0006633 (fatty acid biosynthetic process), GO:0009317 (acetyl-CoA carboxylase complex), GO:0016874 (ligase activity)
Niben101Scf03308g01001.1	gb|KEH28914.1|	--*-	phloem filament protein PP1 [Medicago truncatula]		
Niben101Scf11312g00005.1	gb|EMT12884.1|	***-	Sn1-specific diacylglycerol lipase alpha [Aegilops tauschii]	IPR005592 (Mono-/di-acylglycerol lipase, N-terminal), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0016042 (lipid catabolic process)
Niben101Scf03595g15002.1	sp|Q1JPL7|PME18_ARATH	****	Pectinesterase/pectinesterase inhibitor 18	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf08515g00019.1	sp|Q9FMR5|VA714_ARATH	****	Vesicle-associated membrane protein 714	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf27243g00001.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf03045g06009.1	sp|Q949Z1|PGLR4_ARATH	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00603g00007.1	AT5G24240.1	***-	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein LENGTH=574	IPR011009 (Protein kinase-like domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00024g04003.1			Unknown protein		
Niben101Scf00073g06005.1	sp|Q38998|AKT1_ARATH	*-*-	Potassium channel AKT1	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf00288g16005.1	sp|P46300|RS4_SOLTU	***-	40S ribosomal protein S4	IPR000876 (Ribosomal protein S4e)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01433g04009.1	sp|Q9FZ59|PEPR2_ARATH	--*-	Leucine-rich repeat receptor-like protein kinase PEPR2	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Scf05855g05007.1	sp|Q9M157|ETC3_ARATH	--*-	MYB-like transcription factor ETC3	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02201g00015.1	sp|O49717|CDPKF_ARATH	--**	Calcium-dependent protein kinase 15	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01922g06010.1	ref|XP_002518177.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF44310.1| conserved hypothetical protein [Ricinus communis]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf06956g00021.1	sp|Q6NVH7|SWAP1_HUMAN	--*-	ATPase SWSAP1	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00560g02002.1			Unknown protein		
Niben101Scf07070g01010.1	gb|AGT97349.1|	*-*-	EG2771 [Manihot esculenta]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf02922g02008.1			Unknown protein		
Niben101Scf09597g03005.1	ref|XP_002522492.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF39984.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02835g00002.1	sp|Q8LC95|ENL3_ARATH	--*-	Early nodulin-like protein 3	IPR008972 (Cupredoxin)	
Niben101Scf07788g04023.1	gb|AHF62658.1|	*-*-	integral membrane protein MviN [Synechococcus sp. WH 8109]	IPR004268 (Flagellin assembly, membrane protein MviN)	
Niben101Scf05298g05002.1	sp|Q9M9W1|RL222_ARATH	***-	60S ribosomal protein L22-2	IPR002671 (Ribosomal protein L22e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09832g00001.1	sp|A7SDW5|EIF3L_NEMVE	****	Eukaryotic translation initiation factor 3 subunit L	IPR019382 (Translation initiation factor 3 complex subunit L)	GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf01676g00012.1			Unknown protein		
Niben101Scf01094g02006.1	sp|Q6X7J5|WOX8_ARATH	***-	WUSCHEL-related homeobox 8	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf00153g00017.1	sp|P53131|PRP43_YEAST	*-*-	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02709g01005.1	sp|Q9ZV04|PER24_ARATH	****	Peroxidase 24	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00408g00002.1	sp|O23081|CRK41_ARATH	*-**	Cysteine-rich receptor-like protein kinase 41	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01485g00011.1	sp|Q1LUM3|ENDUC_DANRE	*-*-	Poly(U)-specific endoribonuclease-C	IPR018998 (Endoribonuclease XendoU)	GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf09882g01005.1	sp|P93400|PLDA1_TOBAC	****	Phospholipase D alpha 1	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0004630 (phospholipase D activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0046470 (phosphatidylcholine metabolic process)
Niben101Scf04778g01001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR009854 (Orthoreovirus membrane fusion p10), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03764g04008.1	sp|Q9SUJ1|SYP43_ARATH	***-	Syntaxin-43	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf09773g01012.1	sp|Q9Y673|ALG5_HUMAN	***-	Dolichyl-phosphate beta-glucosyltransferase	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf03300g02008.1	AT3G19090.1	****	RNA-binding protein LENGTH=455	IPR009818 (Ataxin-2, C-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01063g08024.1	sp|E9PTG8|STK10_RAT	*-**	Serine/threonine-protein kinase 10	IPR011009 (Protein kinase-like domain), IPR016024 (Armadillo-type fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005488 (binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04464g01004.1	AT3G22200.2	*-**	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein LENGTH=513	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01200g02001.1	sp|Q0WLB5|CLAH2_ARATH	*-**	Clathrin heavy chain 2	IPR016341 (Clathrin, heavy chain)	GO:0005198 (structural molecule activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030130 (clathrin coat of trans-Golgi network vesicle), GO:0030132 (clathrin coat of coated pit)
Niben101Scf00497g08005.1	sp|Q6NRL1|AGAP1_XENLA	*-**	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1	IPR001164 (Arf GTPase activating protein), IPR011993 (Pleckstrin homology-like domain), IPR020683 (Ankyrin repeat-containing domain), IPR027267 (Arfaptin homology (AH) domain/BAR domain)	GO:0005515 (protein binding), GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf00849g01018.1	AT3G63170.1	*-*-	Chalcone-flavanone isomerase family protein LENGTH=279		
Niben101Scf05434g00011.1	AT1G23090.1	*-**	sulfate transporter 91 LENGTH=631	IPR001902 (Sulphate anion transporter)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf06621g01003.1	sp|P0ABI1|CLPA_ECO57	*-**	ATP-dependent Clp protease ATP-binding subunit ClpA	IPR001270 (ClpA/B family), IPR004176 (Clp, N-terminal), IPR019489 (Clp ATPase, C-terminal), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028299 (ClpA/B, conserved site 2)	GO:0005524 (ATP binding), GO:0019538 (protein metabolic process)
Niben101Scf02757g01001.1	AT4G29060.1	*-**	elongation factor Ts family protein LENGTH=953	IPR001816 (Translation elongation factor EFTs/EF1B), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding), GO:0003746 (translation elongation factor activity), GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006414 (translational elongation)
Niben101Scf03590g01001.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01773g08010.1	AT4G03520.1	***-	Thioredoxin superfamily protein LENGTH=186	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf06872g03002.1	sp|Q5JTN6|WDR38_HUMAN	***-	WD repeat-containing protein 38	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf11408g01011.1	sp|Q9H857|NT5D2_HUMAN	*-*-	5'-nucleotidase domain-containing protein 2	IPR008380 (HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase), IPR023214 (HAD-like domain)	
Niben101Scf04024g02024.1	sp|C5BDY7|MDTK_EDWI9	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf05017g07009.1	sp|B3EWZ6|MLRP2_ACRMI	--*-	MAM and LDL-receptor class A domain-containing protein 2		
Niben101Scf14144g01015.1	sp|P48001|KNAT4_ARATH	*-*-	Homeobox protein knotted-1-like 4	IPR005540 (KNOX1), IPR005541 (KNOX2)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf03341g00002.1	AT1G53780.2	*-**	peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases LENGTH=620	IPR003959 (ATPase, AAA-type, core), IPR021911 (ATPase family AAA domain-containing protein 3, domain of unknown function DUF3523), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Ctg06292g00001.1	sp|Q9SHZ8|PP168_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02417g07001.1	gb|AAU90304.1|	--*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf01492g01014.1	sp|Q9SHK2|PPR17_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05425g00017.1	gb|AFI44329.1|	*-*-	NADH dehydrogenase subunit 4 (mitochondrion) [Silene vulgaris]		
Niben101Scf00123g01001.1	sp|Q99437|VATO_HUMAN	****	V-type proton ATPase 21 kDa proteolipid subunit	IPR000245 (V-ATPase proteolipid subunit), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf08936g09004.1	sp|Q9SBA5|ITPK1_ARATH	*-**	Inositol-tetrakisphosphate 1-kinase 1	IPR008656 (Inositol-tetrakisphosphate 1-kinase)	GO:0000287 (magnesium ion binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0032957 (inositol trisphosphate metabolic process), GO:0047325 (inositol tetrakisphosphate 1-kinase activity), GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity), GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
Niben101Scf05395g03010.1	sp|Q94G86|ALL9_OLEEU	*-*-	Glucan endo-1,3-beta-D-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04339g04002.1	sp|Q604P3|TRPB_METCA	****	Tryptophan synthase beta chain	IPR023026 (Tryptophan synthase beta chain/beta chain-like)	GO:0000162 (tryptophan biosynthetic process), GO:0004834 (tryptophan synthase activity), GO:0006568 (tryptophan metabolic process)
Niben101Scf06203g05011.1			Unknown protein	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf02444g00035.1	sp|P27707|DCK_HUMAN	*-**	Deoxycytidine kinase	IPR002624 (Deoxynucleoside kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0019206 (nucleoside kinase activity)
Niben101Scf03761g00004.1	AT2G46600.1	****	Calcium-binding EF-hand family protein LENGTH=135	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00069g12020.1	AT2G16030.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=231	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf00320g02011.1	sp|P79011|T2EB_SCHPO	--*-	Transcription initiation factor IIE subunit beta		
Niben101Scf14977g00008.1	sp|Q7X923|SPT16_ORYSJ	***-	FACT complex subunit SPT16	IPR000994 (Peptidase M24, structural domain), IPR013719 (Domain of unknown function DUF1747), IPR013953 (FACT complex subunit Spt16p/Cdc68p), IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	
Niben101Scf04122g00007.1			Unknown protein		
Niben101Scf01972g01001.1	sp|Q09428|ABCC8_HUMAN	--*-	ATP-binding cassette sub-family C member 8		
Niben101Scf02031g00028.1	gb|AGZ90705.1|	*-*-	maturase, partial (mitochondrion) [Forsskaolea angustifolia]	IPR000477 (Reverse transcriptase domain)	
Niben101Scf08892g00008.1	AT1G74040.1	****	2-isopropylmalate synthase 1 LENGTH=631	IPR005671 (2-isopropylmalate synthase, bacterial-type)	GO:0003824 (catalytic activity), GO:0003852 (2-isopropylmalate synthase activity), GO:0009098 (leucine biosynthetic process), GO:0019752 (carboxylic acid metabolic process), GO:0046912 (transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer)
Niben101Scf01171g08015.1	sp|O34392|YTRE_BACSU	*-**	ABC transporter ATP-binding protein YtrE	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf02217g03003.1	sp|P34102|PK3_DICDI	*-**	Protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01587g01006.1	sp|Q9LV58|MBF1C_ARATH	***-	Multiprotein-bridging factor 1c	IPR010982 (Lambda repressor-like, DNA-binding domain), IPR013729 (Multiprotein bridging factor 1, N-terminal)	GO:0003677 (DNA binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00363g00015.1	sp|A8GMN0|RS9_RICAH	*-*-	30S ribosomal protein S9	IPR000754 (Ribosomal protein S9), IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02063g01004.1	AT3G23170.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=107		
Niben101Scf01090g05004.1	gb|AGV54219.1|	****	serine-type peptidase [Phaseolus vulgaris]	IPR000223 (Peptidase S26A, signal peptidase I), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane)
Niben101Scf08160g05011.1	AT1G47330.1	***-	CBS domain-containing protein with a domain of unknown function (DUF21) LENGTH=527	IPR002550 (Domain of unknown function DUF21)	
Niben101Scf00159g07003.1	AT5G55530.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=405	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf02156g09006.1	sp|P47192|VA722_ARATH	****	Vesicle-associated membrane protein 722	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf07798g03010.1	sp|B7MFG9|LLDD_ECO45	***-	L-lactate dehydrogenase	IPR012133 (Alpha-hydroxy acid dehydrogenase, FMN-dependent), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09338g04004.1	sp|Q589C0|RPOB_SILLA	*-**	DNA-directed RNA polymerase subunit beta	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf02836g03016.1	ref|XP_007014085.1|	***-	ARM repeat superfamily protein, putative isoform 3 [Theobroma cacao] gb|EOY31704.1| ARM repeat superfamily protein, putative isoform 3 [Theobroma cacao]	IPR016024 (Armadillo-type fold), IPR026003 (HEAT repeat associated with sister chromatid cohesion protein)	GO:0005488 (binding)
Niben101Scf00016g04007.1	sp|Q6G508|RL21_BARHE	*-*-	50S ribosomal protein L21	IPR028909 (Ribosomal protein L21-like)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf12443g02008.1	sp|Q6NTV8|MED20_XENLA	--**	Mediator of RNA polymerase II transcription subunit 20	IPR013921 (Mediator complex, subunit Med20)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf02072g02018.1	sp|Q9CR60|GOT1B_MOUSE	****	Vesicle transport protein GOT1B	IPR007305 (Vesicle transport protein, Got1/SFT2-like)	GO:0016192 (vesicle-mediated transport)
Niben101Scf01176g00002.1	sp|Q86AV5|MCFX_DICDI	***-	Mitochondrial substrate carrier family protein X	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf07050g00010.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03523g01022.1	sp|Q9LUQ6|RL192_ARATH	***-	60S ribosomal protein L19-2	IPR000196 (Ribosomal protein L19/L19e domain), IPR023638 (Ribosomal protein L19/L19e conserved site), IPR027547 (Ribosomal protein L19/L19e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00215g00022.1	sp|O48901|DPOD1_SOYBN	*-**	DNA polymerase delta catalytic subunit	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003887 (DNA-directed DNA polymerase activity)
Niben101Scf05732g04032.1	sp|Q93ZB9|FACR3_ARATH	****	Fatty acyl-CoA reductase 3	IPR016040 (NAD(P)-binding domain), IPR026055 (Fatty acyl-CoA reductase)	GO:0080019 (fatty-acyl-CoA reductase (alcohol-forming) activity)
Niben101Scf01964g09009.1			Unknown protein		
Niben101Scf03413g02013.1	sp|Q1QDM9|GLND_PSYCK	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf00595g04004.1	sp|Q5ZLK5|P4HA2_CHICK	*-*-	Prolyl 4-hydroxylase subunit alpha-2	IPR003582 (ShKT domain), IPR006620 (Prolyl 4-hydroxylase, alpha subunit)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03208g02009.1	sp|Q493S6|DNAJ_BLOPB	--*-	Chaperone protein DnaJ	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain), IPR002477 (Peptidoglycan binding-like)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf03595g14004.1	sp|Q9LUS7|RLF23_ARATH	*-*-	Rapid alkalinization factor 23	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf00821g16001.1	sp|Q94AG2|SERK1_ARATH	*-*-	Somatic embryogenesis receptor kinase 1	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf06977g00024.1	sp|Q52KV5|LEO1_XENLA	*-*-	RNA polymerase-associated protein LEO1	IPR007149 (Leo1-like protein)	
Niben101Scf00644g00021.1	ref|XP_002533162.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29221.1| conserved hypothetical protein [Ricinus communis]	IPR026939 (At2g23090 like)	
Niben101Scf13141g02012.1	sp|A9KIG5|FTSH_CLOPH	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf07785g00015.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf12855g00002.1			Unknown protein		
Niben101Scf04528g13015.1	sp|B2VKX1|Y1574_ERWT9	--*-	UPF0225 protein ETA_15740		
Niben101Scf07255g01008.1	sp|Q5RFA2|SYFA_PONAB	*-*-	Phenylalanine--tRNA ligase alpha subunit		
Niben101Scf04612g00003.1	sp|P85206|NLTP2_ACTDE	****	Non-specific lipid-transfer protein 2	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf09262g00001.1	sp|O81211|RBOHE_ARATH	****	Respiratory burst oxidase homolog protein E	IPR011992 (EF-hand domain pair), IPR013121 (Ferric reductase, NAD binding), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0004601 (peroxidase activity), GO:0005509 (calcium ion binding), GO:0016491 (oxidoreductase activity), GO:0050664 (oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00072g05004.1	sp|O48957|C99A1_SORBI	***-	Cytochrome P450 CYP99A1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf14929g00002.1	ref|XP_004354403.1|	*-*-	RWP-RK domain-containing protein [Dicty [Dictyostelium fasciculatum]	IPR003035 (RWP-RK domain)	
Niben101Scf02271g01004.1	AT4G03270.1	***-	Cyclin D6;1 LENGTH=302	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf02797g01003.1	emb|CDY70591.1|	*-*-	BnaCnng68960D [Brassica napus]		
Niben101Ctg05734g00002.1	sp|P60434|RL2_STRP1	*-*-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01994g02014.1	sp|Q9WTZ2|MBTP1_MOUSE	***-	Membrane-bound transcription factor site-1 protease	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03638g00009.1	AT1G15730.1	***-	Cobalamin biosynthesis CobW-like protein LENGTH=448	IPR003495 (CobW/HypB/UreG domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02929g05003.1			Unknown protein		
Niben101Scf00663g05001.1	sp|Q5ZI33|KLHL7_CHICK	*-*-	Kelch-like protein 7	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf00483g00001.1	sp|O57415|RREB1_CHICK	--*-	Ras-responsive element-binding protein 1		
Niben101Scf01090g02003.1			Unknown protein		
Niben101Scf02440g01033.1			Unknown protein		
Niben101Scf02533g01001.1	sp|B8HPS9|RNH_CYAP4	-***	Ribonuclease H	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf10055g07005.1	sp|Q6FFL8|MAO1_ACIAD	****	NAD-dependent malic enzyme	IPR001891 (Malic oxidoreductase)	GO:0004470 (malic enzyme activity), GO:0004471 (malate dehydrogenase (decarboxylating) (NAD+) activity), GO:0006108 (malate metabolic process), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03450g02003.1	sp|O60662|KLH41_HUMAN	*-*-	Kelch-like protein 41	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf00885g16001.1	AT1G30300.1	***-	Metallo-hydrolase/oxidoreductase superfamily protein LENGTH=324	IPR001279 (Beta-lactamase-like)	
Niben101Scf16812g00007.1	sp|Q9SUY0|FB244_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf03390g14019.1	sp|O04251|Y4211_ARATH	*-*-	BRCT domain-containing protein	IPR001357 (BRCT domain)	
Niben101Scf03263g03004.1	sp|Q9ZW24|GSTU7_ARATH	***-	Glutathione S-transferase U7	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf00327g01036.1	sp|Q9AKM6|FER2_RICMO	***-	2Fe-2S ferredoxin	IPR001055 (Adrenodoxin), IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf11589g00003.1	ref|NP_001048617.1|	*-*-	[Oryza sativa Japonica Group] dbj|BAF10531.1| Os02g0831200, partial [Oryza sativa Japonica Group]	IPR003772 (Protein of unknown function DUF177)	
Niben101Scf01068g06004.1			Unknown protein		
Niben101Scf03595g03002.1	sp|Q6DCC7|LYSM4_XENLA	*-*-	LysM and putative peptidoglycan-binding domain-containing protein 4	IPR018392 (LysM domain)	
Niben101Scf01208g02002.1	sp|B0JSJ8|RL20_MICAN	***-	50S ribosomal protein L20	IPR005813 (Ribosomal protein L20)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf15233g00001.1	sp|O70481|UBR1_MOUSE	*-*-	E3 ubiquitin-protein ligase UBR1	IPR003126 (Zinc finger, N-recognin)	GO:0008270 (zinc ion binding)
Niben101Scf00167g03003.1	AT3G27110.1	*-*-	Peptidase family M48 family protein LENGTH=344		
Niben101Scf00481g02012.1	AT3G12600.1	****	nudix hydrolase homolog 16 LENGTH=180	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf06734g01028.1	sp|Q9ZUI6|AP1G2_ARATH	****	AP-1 complex subunit gamma-2	IPR013041 (Coatomer/clathrin adaptor appendage, Ig-like subdomain), IPR016024 (Armadillo-type fold), IPR017107 (Adaptor protein complex AP-1, gamma subunit)	GO:0005488 (binding), GO:0005794 (Golgi apparatus), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030131 (clathrin adaptor complex)
Niben101Scf02063g07002.1	sp|Q9FIC6|GL117_ARATH	***-	Germin-like protein subfamily 1 member 17	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf17612g01008.1	sp|Q28147|PP1R8_BOVIN	*-*-	Nuclear inhibitor of protein phosphatase 1	IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf08039g04008.1	sp|P42744|ULA1_ARATH	***-	NEDD8-activating enzyme E1 regulatory subunit	IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity)
Niben101Scf03027g02007.1	AT1G26470.1	****	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages;	IPR012423 (Chromatin modification-related protein Eaf7/MRGBP)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043189 (H4/H2A histone acetyltransferase complex)
Niben101Scf12162g00001.1			Unknown protein		
Niben101Scf00646g08008.1	sp|P36049|EBP2_YEAST	***-	rRNA-processing protein EBP2	IPR008610 (Eukaryotic rRNA processing)	
Niben101Scf35933g00004.1	sp|C4B8C4|EPFL3_ARATH	***-	EPIDERMAL PATTERNING FACTOR-like protein 3		
Niben101Scf02929g02031.1	emb|CCH50966.1|	--*-	T4.5 [Malus x robusta]		
Niben101Scf01999g03010.1			Unknown protein		
Niben101Scf00797g18010.1	AT4G01170.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=444		
Niben101Scf03026g01010.1	sp|A2YNI2|MAD18_ORYSI	*-*-	MADS-box transcription factor 18	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03906g03012.1	gb|ERE65596.1|	****	histone-binding protein RBBP7-like protein [Cricetulus griseus]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR022052 (Histone-binding protein RBBP4, N-terminal)	GO:0005515 (protein binding)
Niben101Scf03085g06004.1	AT1G06290.1	****	acyl-CoA oxidase 3 LENGTH=675	IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR012258 (Acyl-CoA oxidase)	GO:0003995 (acyl-CoA dehydrogenase activity), GO:0003997 (acyl-CoA oxidase activity), GO:0005777 (peroxisome), GO:0006631 (fatty acid metabolic process), GO:0006635 (fatty acid beta-oxidation), GO:0008152 (metabolic process), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01318g00005.1	sp|O80439|RR31_ARATH	*-*-	30S ribosomal protein S31, chloroplastic		
Niben101Scf01577g00007.1	AT1G10410.1	*-*-	Protein of unknown function (DUF1336) LENGTH=485	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf01409g12029.1	sp|Q110B7|RL14_TRIEI	*-*-	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00854g05028.1			Unknown protein		
Niben101Scf19211g00005.1	AT1G01225.1	***-	NC domain-containing protein-related LENGTH=260	IPR007053 (LRAT-like domain)	
Niben101Scf10968g03009.1	sp|A2YEZ6|SAP8_ORYSI	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	IPR000058 (Zinc finger, AN1-type), IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf01220g01001.1	sp|Q3EB08|FBK69_ARATH	*-*-	F-box/kelch-repeat protein	IPR001810 (F-box domain), IPR015915 (Kelch-type beta propeller), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf00603g03027.1	sp|Q9LEX0|P2A13_ARATH	*-*-	F-box protein PP2-A13		
Niben101Scf02794g03002.1	AT4G15240.1	***-	Protein of unknown function (DUF604) LENGTH=488	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf06156g04008.1	sp|Q9C5N2|TMN9_ARATH	***-	Transmembrane 9 superfamily member 9	IPR004240 (Nonaspanin (TM9SF)), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane)
Niben101Scf02699g02005.1			Unknown protein		
Niben101Scf01369g03005.1	sp|B4RCM1|NUOH_PHEZH	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf02688g01008.1	AT3G20790.1	***-	NAD(P)-binding Rossmann-fold superfamily protein LENGTH=355	IPR016040 (NAD(P)-binding domain)	
Niben101Scf05692g02003.1			Unknown protein		
Niben101Scf01980g09001.1	sp|Q43125|CRY1_ARATH	***-	Cryptochrome-1	IPR002081 (Cryptochrome/DNA photolyase, class 1)	GO:0003913 (DNA photolyase activity), GO:0006281 (DNA repair)
Niben101Scf08407g00021.1	sp|P34102|PK3_DICDI	*-**	Protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01521g03002.1	sp|Q9FT52|ATP5H_ARATH	--*-	ATP synthase subunit d, mitochondrial		
Niben101Scf01634g07033.1	sp|Q9H0Z9|RBM38_HUMAN	*-**	RNA-binding protein 38	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06628g00008.1	ref|XP_002535169.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF27214.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf32174g00001.1	sp|O23164|CRPM4_ARATH	***-	Cold-regulated 413 plasma membrane protein 4	IPR008892 (Cold acclimation WCOR413)	
Niben101Scf13558g01006.1	AT3G43600.1	***-	aldehyde oxidase 2 LENGTH=1321	IPR012675 (Beta-grasp domain), IPR016166 (FAD-binding, type 2), IPR016208 (Aldehyde oxidase/xanthine dehydrogenase)	GO:0003824 (catalytic activity), GO:0005506 (iron ion binding), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0009055 (electron carrier activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0046872 (metal ion binding), GO:0050660 (flavin adenine dinucleotide binding), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02517g01022.1	ref|XP_007031605.1|	--*-	NAC domain transcriptional regulator superfamily protein, putative [Theobroma cacao] gb|EOY02531.1| NAC domain transcriptional regulator superfamily protein, putative [Theobroma cacao]		
Niben101Scf01721g02001.1	sp|Q54KZ4|CHMP6_DICDI	*-*-	Charged multivesicular body protein 6	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf02408g04021.1	sp|B7N929|AES_ECOLU	*-*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf00526g01003.1			Unknown protein		
Niben101Scf02420g00003.1	sp|Q0WWQ1|ATG3_ARATH	***-	Autophagy-related protein 3	IPR007134 (Autophagy-related protein 3, N-terminal), IPR007135 (Autophagy-related protein 3), IPR019461 (Autophagy-related protein 3, C-terminal)	
Niben101Scf03403g02009.1			Unknown protein		
Niben101Scf06649g02002.1			Unknown protein		
Niben101Scf00288g11013.1	sp|Q9FGI1|LTN1_ARATH	*-*-	E3 ubiquitin-protein ligase listerin	IPR016024 (Armadillo-type fold), IPR019399 (Parkin co-regulated protein)	GO:0005488 (binding)
Niben101Scf04388g00016.1			Unknown protein		
Niben101Scf01374g02009.1	gb|KEH35985.1|	***-	sulfite exporter TauE/SafE family protein [Medicago truncatula]		
Niben101Scf10465g03007.1	ref|WP_032116836.1|	*-**	cation transporter [Clostridium sp. CL-2]	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain), IPR027470 (Cation efflux protein cytoplasmic domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02290g05026.1	sp|Q9UMN6|KMT2B_HUMAN	--*-	Histone-lysine N-methyltransferase 2B	IPR000313 (PWWP domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf16451g00012.1	AT3G55570.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=109		
Niben101Scf01002g02011.1	sp|Q8LPR5|TCP4_ARATH	***-	Transcription factor TCP4	IPR005333 (Transcription factor, TCP)	
Niben101Scf27139g00023.1	gb|KEH19051.1|	--*-	NBS-LRR type disease resistance protein [Medicago truncatula]		
Niben101Scf00735g00007.1	sp|Q5RAJ5|STK36_PONAB	*-**	Serine/threonine-protein kinase 36	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06430g00003.1	AT3G22600.1	*-*-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=170	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf14172g00002.1	sp|Q41001|BCP_PEA	*-*-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf04271g01003.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf01308g01004.1	AT3G23510.1	*-*-	Cyclopropane-fatty-acyl-phospholipid synthase LENGTH=867		
Niben101Scf14566g01009.1	AT2G24060.1	*-**	Translation initiation factor 3 protein LENGTH=312	IPR001288 (Translation initiation factor 3)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf06884g00001.1	sp|Q5GUR8|RHLB_XANOR	*-**	ATP-dependent RNA helicase RhlB	IPR001650 (Helicase, C-terminal), IPR012562 (GUCT), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus)
Niben101Scf07060g03008.1	sp|Q9N1Q9|CABP2_BOVIN	--**	Calcium-binding protein 2	IPR004837 (Sodium/calcium exchanger membrane region), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03651g00008.1	AT3G10150.1	***-	purple acid phosphatase 16 LENGTH=367	IPR011230 (Phosphoesterase At2g46880), IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf07231g00013.1	sp|Q9VP22|CDK12_DROME	*-**	Cyclin-dependent kinase 12	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00578g00012.1	sp|Q94B77|FH5_ARATH	*-*-	Formin-like protein 5	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR015425 (Formin, FH2 domain)	
Niben101Scf14115g01002.1	sp|Q9C516|XLG3_ARATH	*-**	Extra-large guanine nucleotide-binding protein 3	IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit)	GO:0003924 (GTPase activity), GO:0004871 (signal transducer activity), GO:0007186 (G-protein coupled receptor signaling pathway), GO:0019001 (guanyl nucleotide binding), GO:0031683 (G-protein beta/gamma-subunit complex binding)
Niben101Scf09808g00016.1	sp|P10538|AMYB_SOYBN	****	Beta-amylase	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf07402g02005.1	ref|XP_002305892.1|	--*-	Zinc finger protein 4 [Populus trichocarpa] gb|EEE86403.1| Zinc finger protein 4 [Populus trichocarpa]		
Niben101Scf02572g00014.1	sp|A7FNG1|ACSA_YERP3	***-	Acetyl-coenzyme A synthetase	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04306g02003.1	sp|Q9HDW7|ATC2_SCHPO	*-*-	Calcium-transporting ATPase 2	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf05776g01063.1			Unknown protein		
Niben101Scf00049g01013.1	ref|XP_007010390.1|	--*-	Retrotransp [Theobroma cacao]		
Niben101Scf02285g00001.1	sp|Q8W110|FRO4_ARATH	*-*-	Ferric reduction oxidase 4	IPR013130 (Ferric reductase transmembrane component-like domain)	
Niben101Scf06866g01011.1	AT3G05170.1	***-	Phosphoglycerate mutase family protein LENGTH=316	IPR001345 (Phosphoglycerate/bisphosphoglycerate mutase, active site), IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf07253g02019.1	sp|Q6AXT5|RAB21_RAT	*-*-	Ras-related protein Rab-21	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf06616g00003.1	gb|AFI47463.1|	****	invertase inhibitor [Solanum tuberosum]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00073g03014.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03266g01003.1	ref|XP_002518178.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF44311.1| conserved hypothetical protein [Ricinus communis]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf12735g00009.1	emb|CDY42438.1|	***-	BnaC02g22700D [Brassica napus]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf01068g01004.1	sp|Q6NW95|FXL15_DANRE	*-*-	F-box/LRR-repeat protein 15	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf03889g01012.1	sp|Q8S920|UBC5A_ORYSJ	***-	Ubiquitin-conjugating enzyme E2 5A	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf01267g00001.1	AT1G09960.1	***-	sucrose transporter 4 LENGTH=510	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf06077g04012.1	ref|XP_007046424.1|	*-*-	Vacuolar iron transporter family protein, putative [Theobroma cacao] gb|EOX90581.1| Vacuolar iron transporter family protein, putative [Theobroma cacao]		
Niben101Scf00742g01003.1	ref|XP_003620005.1|	--**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf08033g00010.1	sp|Q9CQ04|OGFD2_MOUSE	--*-	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2		
Niben101Scf04375g05002.1	sp|O80800|ACPM2_ARATH	***-	Acyl carrier protein 2, mitochondrial	IPR009081 (Acyl carrier protein-like)	
Niben101Scf03434g00004.1	sp|Q9C7Z9|SCP18_ARATH	****	Serine carboxypeptidase-like 18	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00953g01016.1	emb|CDY42950.1|	***-	BnaA01g18040D [Brassica napus]		
Niben101Scf04879g06005.1			Unknown protein		
Niben101Scf05491g07010.1	AT2G12190.1	*-*-	Cytochrome P450 superfamily protein LENGTH=512	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf15962g00011.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00635g04016.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf06394g08017.1	sp|P41129|RL132_BRANA	***-	60S ribosomal protein L13-2	IPR001380 (Ribosomal protein L13e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04094g02006.1	AT5G64740.1	****	cellulose synthase 6 LENGTH=1084	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf01063g04016.1	sp|Q9M9M4|CSLD3_ARATH	****	Cellulose synthase-like protein D3	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Ctg15574g00001.1	sp|Q9SB61|ZHD2_ARATH	*-*-	Zinc-finger homeodomain protein 2	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain)	
Niben101Scf05988g06006.1			Unknown protein		
Niben101Scf00064g00021.1	AT4G33905.1	*-**	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein LENGTH=261	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf07650g00004.1	ref|XP_007016886.1|	*-*-	Domain of Uncharacterized protein function isoform 6 [Theobroma cacao] gb|EOY34505.1| Domain of Uncharacterized protein function isoform 6 [Theobroma cacao]	IPR010369 (Protein of unknown function DUF966)	
Niben101Scf02000g00010.1	sp|Q9STE1|PP333_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00495g02007.1	sp|Q9S7W5|TCP13_ARATH	--*-	Transcription factor TCP13	IPR005333 (Transcription factor, TCP)	
Niben101Scf03644g01007.1	sp|Q7XT39|EXPB5_ORYSJ	***-	Expansin-B5	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0019953 (sexual reproduction)
Niben101Scf05004g04005.1	sp|Q7MT92|RLMH_PORGI	****	Ribosomal RNA large subunit methyltransferase H	IPR003742 (SPOUT methyltransferase, predicted), IPR029028 (Alpha/beta knot methyltransferases)	GO:0005737 (cytoplasm), GO:0006364 (rRNA processing), GO:0008168 (methyltransferase activity)
Niben101Scf02272g00002.1	sp|Q8SSN5|NAA20_DICDI	****	N-alpha-acetyltransferase 20	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf03915g03003.1	sp|P46903|NATA_BACSU	*-**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf01184g09006.1	sp|A1B495|NUOD_PARDP	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00109g02016.1	sp|P23438|SSRB_CANFA	-**-	Translocon-associated protein subunit beta	IPR008856 (Translocon-associated protein subunit beta)	GO:0005783 (endoplasmic reticulum), GO:0016021 (integral component of membrane)
Niben101Scf06374g00013.1	AT3G22250.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=461	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf10866g02018.1	sp|Q9D1D4|TMEDA_MOUSE	***-	Transmembrane emp24 domain-containing protein 10	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf00246g02004.1	sp|Q2W1A2|RL33_MAGSA	-**-	50S ribosomal protein L33	IPR001705 (Ribosomal protein L33), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04114g02040.1			Unknown protein		
Niben101Scf14394g01013.1	sp|Q1BQX0|NADE_BURCA	*-**	NH(3)-dependent NAD(+) synthetase	IPR014445 (Glutamine-dependent NAD(+) synthetase)	GO:0003952 (NAD+ synthase (glutamine-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0006807 (nitrogen compound metabolic process), GO:0009435 (NAD biosynthetic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf03038g16006.1			Unknown protein		
Niben101Scf08693g00010.1	AT1G79770.1	***-	Protein of unknown function (DUF1677) LENGTH=167	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf13802g03003.1	sp|Q6FWD3|SC242_CANGA	****	Protein transport protein SEC24-2	IPR002035 (von Willebrand factor, type A), IPR006895 (Zinc finger, Sec23/Sec24-type), IPR006896 (Sec23/Sec24, trunk domain), IPR006900 (Sec23/Sec24, helical domain)	GO:0006886 (intracellular protein transport), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0008270 (zinc ion binding), GO:0030127 (COPII vesicle coat)
Niben101Scf00240g00015.1	ref|XP_007024788.1|	***-	Muscle M-line assembly protein unc-89, putative isoform 3 [Theobroma cacao] gb|EOY27410.1| Muscle M-line assembly protein unc-89, putative isoform 3 [Theobroma cacao]		
Niben101Scf01328g00001.1	sp|C6T1G0|CASP7_SOYBN	--*-	CASP-like protein 7	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf04504g01003.1	sp|Q6NRL1|AGAP1_XENLA	*-**	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf08755g01006.1	AT2G12190.1	***-	Cytochrome P450 superfamily protein LENGTH=512	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00187g02020.1	AT3G19650.1	***-	cyclin-related LENGTH=302	IPR018545 (Btz domain)	
Niben101Scf00905g09005.1			Unknown protein		
Niben101Scf02552g01013.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf15077g01012.1	sp|Q9XI23|BOR4_ARATH	***-	Boron transporter 4	IPR003020 (Bicarbonate transporter, eukaryotic)	GO:0005452 (inorganic anion exchanger activity), GO:0006820 (anion transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf02122g02012.1	emb|CDY41498.1|	***-	BnaA08g21000D [Brassica napus]		
Niben101Scf24758g01002.1	AT4G37790.1	*-*-	Homeobox-leucine zipper protein family LENGTH=278	IPR003106 (Leucine zipper, homeobox-associated), IPR006712 (HD-ZIP protein, N-terminal), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06093g00011.1			Unknown protein		
Niben101Scf01796g01007.1	AT3G20920.1	*-*-	translocation protein-related LENGTH=365		
Niben101Scf03729g00008.1	ref|XP_007042638.1|	*-*-	Interferon-related developmental regulator family protein / IFRD family protein, putative [Theobroma cacao] gb|EOX98469.1| Interferon-related developmental regulator family protein / IFRD family protein, putative [Theobroma cacao]		
Niben101Scf00328g01001.1	gb|ABG66090.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf02390g02001.1	sp|O96006|ZBED1_HUMAN	*-*-	Zinc finger BED domain-containing protein 1	IPR003656 (Zinc finger, BED-type), IPR008906 (HAT dimerisation domain, C-terminal), IPR012337 (Ribonuclease H-like domain), IPR025525 (hAT-like transposase, RNase-H fold)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00568g04009.1	sp|Q09ME6|PETD_CITSI	***-	Cytochrome b6-f complex subunit 4	IPR005798 (Cytochrome b/b6, C-terminal), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity)
Niben101Scf06493g00019.1	sp|Q921Y2|IMP3_MOUSE	***-	U3 small nucleolar ribonucleoprotein protein IMP3	IPR001912 (Ribosomal protein S4/S9, N-terminal), IPR002942 (RNA-binding S4 domain), IPR022801 (Ribosomal protein S4/S9)	GO:0003723 (RNA binding), GO:0005622 (intracellular), GO:0019843 (rRNA binding)
Niben101Scf01888g06002.1	AT4G01870.1	***-	tolB protein-related LENGTH=652		
Niben101Scf07370g01001.1	sp|Q9LDH1|SIB1_ARATH	--*-	Sigma factor binding protein 1, chloroplastic	IPR008889 (VQ)	
Niben101Scf06763g00004.1			Unknown protein		
Niben101Scf12983g01023.1	AT3G17750.1	*-**	Protein kinase superfamily protein LENGTH=1138	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04406g08002.1	AT2G33490.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=623	IPR027267 (Arfaptin homology (AH) domain/BAR domain)	
Niben101Scf00606g00008.1	AT1G09160.2	*-*-	Protein phosphatase 2C family protein LENGTH=428	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf01999g03012.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf12919g00031.1	sp|Q99M02|MARH2_MOUSE	*-*-	E3 ubiquitin-protein ligase MARCH2	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf01395g00006.1	sp|Q5XET4|PP142_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01328g02013.1	sp|Q9UP83|COG5_HUMAN	****	Conserved oligomeric Golgi complex subunit 5	IPR019465 (Conserved oligomeric Golgi complex subunit 5)	GO:0006891 (intra-Golgi vesicle-mediated transport), GO:0017119 (Golgi transport complex)
Niben101Scf00573g00013.1	AT4G32700.2	*-**	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding LENGTH=2154	IPR000008 (C2 domain), IPR001650 (Helicase, C-terminal), IPR004179 (Sec63 domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014756 (Immunoglobulin E-set), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf12789g00028.1	sp|Q32E51|SYN_SHIDS	****	Asparagine--tRNA ligase	IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004816 (asparagine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006421 (asparaginyl-tRNA aminoacylation)
Niben101Scf06113g03004.1	sp|Q6NU28|CRIPT_XENLA	--*-	Cysteine-rich PDZ-binding protein	IPR019367 (PDZ-binding protein, CRIPT)	
Niben101Scf05799g01004.1	AT5G42660.1	***-	Protein of unknown function (DUF616) LENGTH=463	IPR006852 (Protein of unknown function DUF616)	
Niben101Scf01166g11002.1	ref|XP_002528184.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF34191.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00271g07012.1	AT2G19170.1	****	subtilisin-like serine protease 3 LENGTH=815	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03737g04006.1	AT5G32440.3	***-	Ubiquitin system component Cue protein LENGTH=265	IPR009060 (UBA-like)	GO:0005515 (protein binding)
Niben101Scf16738g00010.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf01814g01015.1	sp|O03176|CYB_LATCH	*-*-	Cytochrome b	IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf00483g03001.1	sp|Q41073|NLTP_PINTA	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf16691g00006.1	sp|Q9FZP1|HPSE3_ARATH	***-	Heparanase-like protein 3	IPR005199 (Glycoside hydrolase, family 79)	GO:0016020 (membrane), GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf06507g00015.1	sp|D0MGU8|FTSH_RHOM4	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf03455g04001.1	sp|Q5VU65|P210L_HUMAN	***-	Nuclear pore membrane glycoprotein 210-like	IPR008964 (Invasin/intimin cell-adhesion)	
Niben101Scf05124g00002.1	sp|Q48761|RADA_LISMO	****	DNA repair protein RadA homolog	IPR004504 (DNA repair protein RadA), IPR020588 (DNA recombination and repair protein RecA-like, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003684 (damaged DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0006281 (DNA repair), GO:0008094 (DNA-dependent ATPase activity)
Niben101Scf18068g00004.1			Unknown protein		
Niben101Scf02370g00001.1	ref|NP_001154406.1|	--**	Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana] gb|ABE65693.1| hypothetical protein [Arabidopsis thaliana] gb|AEE32107.1| Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]	IPR018848 (WIYLD domain)	GO:0018024 (histone-lysine N-methyltransferase activity)
Niben101Scf00691g01003.1	AT5G58070.1	***-	temperature-induced lipocalin LENGTH=186	IPR022271 (Lipocalin, ApoD type)	GO:0005215 (transporter activity)
Niben101Scf26225g00004.1	sp|B5ZXE7|TDH_RHILW	*-*-	L-threonine 3-dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01579g01020.1	sp|P50567|H2A_CHLRE	***-	Histone H2A	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf09686g00009.1	sp|Q9C652|RBP1_ARATH	*-**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00125g01014.1			Unknown protein		
Niben101Scf01013g08009.1	AT5G35450.1	*-*-	Disease resistance protein (CC-NBS-LRR class) family LENGTH=901	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf02653g04021.1	sp|Q9WTL2|RAB25_MOUSE	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02992g03021.1	ref|XP_003593262.1|	--*-	DnaJ homolog subfamily B member [Medicago truncatula]		
Niben101Scf05252g02009.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02420g04001.1	AT1G12310.1	****	Calcium-binding EF-hand family protein LENGTH=148	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02509g04008.1	ref|NP_001051957.1|	*-*-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf04008g01010.1	sp|Q9C778|ELP4_ARATH	*-**	Elongator complex protein 4	IPR008728 (Elongator complex protein 4), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0033588 (Elongator holoenzyme complex)
Niben101Scf01635g04003.1	sp|Q9FHH5|GDU3_ARATH	***-	Protein GLUTAMINE DUMPER 3		
Niben101Scf00167g00015.1	sp|P00252|FER1_DESMC	--*-	Ferredoxin-1	IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf02044g02014.1	sp|Q39266|ZFP7_ARATH	***-	Zinc finger protein 7	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf25893g00014.1	gb|AAT52228.1|	*-*-	RING zinc finger protein-like protein [Cucumis melo]		
Niben101Scf04323g04022.1	sp|Q9JI90|RNF14_MOUSE	--*-	E3 ubiquitin-protein ligase RNF14	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf08772g04009.1	sp|Q6NV31|WDR82_DANRE	*-*-	WD repeat-containing protein 82	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01649g04004.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Ctg13209g00003.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05813g04002.1			Unknown protein		
Niben101Scf05222g05008.1	sp|Q8XIT1|DNAJ_CLOPE	*-*-	Chaperone protein DnaJ	IPR000008 (C2 domain), IPR001623 (DnaJ domain), IPR004179 (Sec63 domain), IPR014756 (Immunoglobulin E-set), IPR027137 (Translocation protein Sec63)	GO:0005515 (protein binding), GO:0008565 (protein transporter activity), GO:0031204 (posttranslational protein targeting to membrane, translocation)
Niben101Scf04548g00001.1	sp|Q92BT1|MNTH_LISIN	*-**	Divalent metal cation transporter MntH	IPR001046 (NRAMP family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf10579g02006.1	sp|P01122|RHO_APLCA	****	Ras-like GTP-binding protein RHO	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02073g03008.1	sp|Q9T072|BH025_ARATH	***-	Transcription factor bHLH25	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf07001g01011.1	sp|O42993|FKBP_SCHPO	***-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf08832g00002.1	AT4G18710.1	****	Protein kinase superfamily protein LENGTH=380	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07638g04007.1			Unknown protein		
Niben101Scf08041g03002.1			Unknown protein		
Niben101Scf08411g00019.1	sp|P22503|GUN_PHAVU	***-	Endoglucanase	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02613g03004.1			Unknown protein		
Niben101Scf09954g00002.1	sp|P51530|DNA2_HUMAN	*-**	DNA replication ATP-dependent helicase/nuclease DNA2	IPR014808 (DNA replication factor Dna2, N-terminal), IPR026851 (Dna2)	GO:0017108 (5'-flap endonuclease activity), GO:0033567 (DNA replication, Okazaki fragment processing), GO:0043142 (single-stranded DNA-dependent ATPase activity)
Niben101Scf03227g03027.1	AT2G07749.1	*-*-	Mitovirus RNA-dependent RNA polymerase LENGTH=246	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf00376g01004.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02929g04030.1			Unknown protein		
Niben101Scf04187g02003.1	sp|P44321|3MGA_HAEIN	****	DNA-3-methyladenine glycosylase	IPR005019 (Methyladenine glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0008725 (DNA-3-methyladenine glycosylase activity)
Niben101Scf11490g00015.1	sp|P83947|PME1_FICPW	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf12289g00014.1	sp|A2Y4S9|CYC_ORYSI	***-	Cytochrome c	IPR002327 (Cytochrome c, class IA/ IB), IPR009056 (Cytochrome c-like domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf02074g02059.1	ref|XP_002530829.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF31542.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02374g00012.1	AT3G12120.1	***-	fatty acid desaturase 2 LENGTH=383	IPR005804 (Fatty acid desaturase, type 1)	GO:0006629 (lipid metabolic process)
Niben101Scf09604g00004.1	sp|Q39173|P2_ARATH	--*-	NADP-dependent alkenal double bond reductase P2	IPR011032 (GroES (chaperonin 10)-like)	
Niben101Scf02818g01011.1	gb|KEH17055.1|	--*-	F-box/RNI/FBD-like domain protein [Medicago truncatula]		
Niben101Scf02459g00025.1	sp|C3JYJ9|CLPX_PSEFS	****	ATP-dependent Clp protease ATP-binding subunit ClpX	IPR003959 (ATPase, AAA-type, core), IPR004487 (Clp protease, ATP-binding subunit ClpX), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf10283g01011.1	sp|Q803I2|ERGI3_DANRE	*-*-	Endoplasmic reticulum-Golgi intermediate compartment protein 3		
Niben101Scf06127g00010.1	sp|Q9M1E7|TET3_ARATH	***-	Tetraspanin-3	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf06077g05012.1	sp|Q9SFU0|SC24A_ARATH	****	Protein transport protein Sec24-like	IPR002035 (von Willebrand factor, type A), IPR006895 (Zinc finger, Sec23/Sec24-type), IPR006896 (Sec23/Sec24, trunk domain)	GO:0006886 (intracellular protein transport), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0008270 (zinc ion binding), GO:0030127 (COPII vesicle coat)
Niben101Scf03422g04028.1	sp|Q4WPW8|RUVB1_ASPFU	*-**	RuvB-like helicase 1	IPR010339 (TIP49, C-terminal), IPR027238 (RuvB-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0043141 (ATP-dependent 5'-3' DNA helicase activity)
Niben101Scf03038g17016.1			Unknown protein		
Niben101Scf36173g00001.1	sp|Q70Y04|PSAB_AMBTC	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00573g03001.1	emb|CDY19671.1|	*-*-	BnaC09g29270D [Brassica napus]		
Niben101Scf02190g06004.1	AT5G20260.1	***-	Exostosin family protein LENGTH=458	IPR004263 (Exostosin-like)	
Niben101Scf04187g00012.1	gb|AHA47101.1|	****	ATPase subunit 8 (mitochondrion) [Amborella trichopoda]	IPR003319 (ATP synthase YMF19-like, N-terminal), IPR009455 (ATP synthase YMF19, uncharacterised, C-terminal)	GO:0005739 (mitochondrion), GO:0016021 (integral component of membrane), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances)
Niben101Scf00302g03023.1	sp|D7LBN4|CSPLH_ARALL	-**-	CASP-like protein 4B1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf09698g01035.1	ref|WP_007326463.1|	--*-	deoxyribodipyrimidine photolyase [Rhodopirellula baltica] gb|EGF27547.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]		
Niben101Scf01718g07005.1	AT1G20330.1	****	sterol methyltransferase 2 LENGTH=361	IPR013705 (Sterol methyltransferase C-terminal), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006694 (steroid biosynthetic process), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf12414g02006.1	sp|Q9FHM7|HIR4_ARATH	***-	Hypersensitive-induced response protein 4	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf05516g04014.1	AT2G20440.1	*-*-	Ypt/Rab-GAP domain of gyp1p superfamily protein LENGTH=425		
Niben101Scf00592g04004.1	gb|AES59797.2|	***-	LA-related protein 6 LA RNA-binding domain protein [Medicago truncatula]	IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf02581g05013.1	sp|Q5RFJ0|COA5_PONAB	--*-	Cytochrome c oxidase assembly factor 5	IPR018793 (Cytochrome c oxidase assembly protein PET191)	
Niben101Scf03345g00007.1	sp|Q920J4|TXNL1_RAT	*-*-	Thioredoxin-like protein 1	IPR005746 (Thioredoxin), IPR011990 (Tetratricopeptide-like helical domain), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding), GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf10781g02006.1			Unknown protein		
Niben101Scf09938g00012.1	sp|Q9D967|MGDP1_MOUSE	****	Magnesium-dependent phosphatase 1	IPR010036 (Magnesium-dependent phosphatase-1, eukaryotic/arcaheal type), IPR023214 (HAD-like domain)	GO:0016791 (phosphatase activity)
Niben101Scf03252g04011.1	ref|NP_043247.1|	*-**	phot of the photosystem II reaction center core heterodimer [Cyanophora paradoxa]	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf06628g01009.1	ref|WP_013186687.1|	-***	TspO and MBR [Croceibacter atlanticus] ref|YP_003715686.1| integral membrane protein [Croceibacter atlanticus HTCC2559] gb|EAP88011.1| integral membrane protein [Croceibacter atlanticus HTCC2559]	IPR004307 (TspO/MBR-related protein)	GO:0016021 (integral component of membrane)
Niben101Scf08442g00010.1	sp|Q6B929|PSBA_GRATL	*-*-	Photosystem Q(B) protein		
Niben101Scf01454g06008.1	gb|KEH30993.1|	*-*-	cytochrome P450 family protein [Medicago truncatula]		
Niben101Scf01511g01006.1	sp|Q2TA14|PCP_BOVIN	****	Lysosomal Pro-X carboxypeptidase	IPR008758 (Peptidase S28), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf05056g03031.1	AT1G05900.2	***-	endonuclease III 2 LENGTH=386	IPR011257 (DNA glycosylase), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf07497g03004.1			Unknown protein		
Niben101Scf03904g00007.1	sp|Q90515|TMEDA_TAKRU	***-	Transmembrane emp24 domain-containing protein 10	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf04231g01031.1	emb|CDY29764.1|	*-*-	BnaA01g19020D [Brassica napus]	IPR008546 (Domain of unknown function DUF828)	
Niben101Scf01023g07010.1	sp|Q9ZT82|CALSC_ARATH	*-*-	Callose synthase 12		
Niben101Scf02533g00003.1			Unknown protein		
Niben101Scf11245g01004.1			Unknown protein		
Niben101Scf18328g00006.1			Unknown protein	IPR003656 (Zinc finger, BED-type)	GO:0003677 (DNA binding)
Niben101Scf10627g00016.1	ref|XP_002516139.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46141.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03734g00001.1	sp|Q9SCP9|VP371_ARATH	***-	Vacuolar protein-sorting-associated protein 37 homolog 1	IPR009851 (Modifier of rudimentary, Modr)	
Niben101Scf02009g00006.1			Unknown protein		
Niben101Scf01365g07007.1	sp|Q80W31|ZN569_MOUSE	*-*-	Zinc finger protein 569	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf25845g00003.1	ref|XP_002516369.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF45986.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05217g02001.1	sp|Q9LSF7|Y3518_ARATH	--*-	B3 domain-containing protein	IPR005508 (B3 domain-containing protein)	
Niben101Scf18637g02017.1			Unknown protein	IPR028144 (Cysteine-rich transmembrane CYSTM domain)	
Niben101Scf08531g01008.1			Unknown protein		
Niben101Scf19779g00007.1	AT4G32760.2	***-	ENTH/VHS/GAT family protein LENGTH=676	IPR004152 (GAT domain), IPR008942 (ENTH/VHS)	GO:0005622 (intracellular), GO:0006886 (intracellular protein transport)
Niben101Scf02085g16005.1	sp|O24160|TGA21_TOBAC	****	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05060g03004.1	sp|Q9M9S0|ZHD4_ARATH	*-*-	Zinc-finger homeodomain protein 4	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain)	
Niben101Scf11552g02006.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11251g00008.1	sp|Q6NMQ7|GASA6_ARATH	***-	Gibberellin-regulated protein 6	IPR003854 (Gibberellin regulated protein)	
Niben101Scf00638g01013.1	ref|NP_001067297.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf02831g05014.1	sp|Q254M8|SURE_CHLFF	*-*-	5'-nucleotidase SurE	IPR002828 (Survival protein SurE-like phosphatase/nucleotidase)	GO:0016787 (hydrolase activity)
Niben101Scf06872g03004.1	sp|O95696|BRD1_HUMAN	*-*-	Bromodomain-containing protein 1	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf20830g00004.1	sp|Q0I1V8|SYI_HISS1	*-**	Isoleucine--tRNA ligase	IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)	GO:0000166 (nucleotide binding), GO:0003824 (catalytic activity), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation)
Niben101Scf02366g04009.1	AT2G18500.1	*-*-	ovate family protein 7 LENGTH=315	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf02831g06007.1	AT3G13784.1	***-	cell wall invertase 5 LENGTH=569	IPR001362 (Glycoside hydrolase, family 32), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03019g03010.1	sp|O00097|ADH1_PICST	***-	Alcohol dehydrogenase 1	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04918g08002.1	gb|ACG39388.1|	***-	adenylate cyclase [Zea mays]	IPR023577 (CYTH-like domain)	
Niben101Scf05848g04003.1	AT1G65295.1	*-*-	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=115		
Niben101Scf04528g03005.1			Unknown protein		
Niben101Scf04083g04035.1	sp|P52409|E13B_WHEAT	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09696g00023.1	ref|NP_001051816.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf05118g03003.1	sp|Q6UX07|DHR13_HUMAN	*-**	Dehydrogenase/reductase SDR family member 13	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf15467g02006.1	ref|XP_003600958.1|	****	Sorting and assembly machinery component-like protein [Medicago truncatula] gb|AES71209.1| outer membrane OMP85 family protein [Medicago truncatula]	IPR000184 (Bacterial surface antigen (D15))	GO:0019867 (outer membrane)
Niben101Scf11232g00026.1	ref|XP_007033392.1|	***-	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1 [Theobroma cacao] gb|EOY04318.1| Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1 [Theobroma cacao]	IPR005344 (Uncharacterised protein family UPF0121)	GO:0016021 (integral component of membrane)
Niben101Scf12382g00016.1	sp|Q93YF5|SUVH1_TOBAC	****	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1	IPR003105 (SRA-YDG), IPR015947 (PUA-like domain)	GO:0042393 (histone binding)
Niben101Scf03849g00016.1	AT5G05830.1	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=204	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf00283g01001.1			Unknown protein		
Niben101Scf08308g04028.1	AT1G11260.1	****	sugar transporter 1 LENGTH=522	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00262g02012.1	sp|Q9SUT9|RTNLB_ARATH	***-	Reticulon-like protein B2	IPR003388 (Reticulon)	
Niben101Scf16657g00011.1	sp|Q5R8F7|PABP1_PONAB	*-**	Polyadenylate-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00953g03002.1	sp|Q7XUN2|MAD17_ORYSJ	*-*-	MADS-box transcription factor 17	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf09539g00003.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00282g03016.1	AT4G25500.1	***-	arginine/serine-rich splicing factor 35 LENGTH=350	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR029537 (Arginine/serine-rich-splicing factor RSP40/RSP41)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03000g00014.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf12560g00024.1	sp|Q9LM76|PUB44_ARATH	***-	U-box domain-containing protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf01855g02008.1	sp|A2XS65|CYT10_ORYSI	****	Cysteine proteinase inhibitor 10	IPR000010 (Proteinase inhibitor I25, cystatin), IPR027214 (Cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf10055g02013.1	AT5G45275.1	***-	Major facilitator superfamily protein LENGTH=570	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Ctg15354g00005.1	gb|KEH40304.1|	***-	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]		
Niben101Scf04364g01003.1	sp|Q6S4N2|HS71B_PIG	*-*-	Heat shock 70 kDa protein 1B	IPR013126 (Heat shock protein 70 family)	
Niben101Scf04568g02010.1	AT1G28130.1	***-	Auxin-responsive GH3 family protein LENGTH=609	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf34305g00009.1			Unknown protein		
Niben101Scf01740g05007.1	sp|Q3UVK0|ERMP1_MOUSE	***-	Endoplasmic reticulum metallopeptidase 1	IPR007484 (Peptidase M28)	
Niben101Scf03952g03003.1	sp|Q4V7B8|RNF44_RAT	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02442g00014.1	AT1G62780.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 94 Blast hits to 94 proteins in 35 species: Archae - 6; Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). LENGTH=237		
Niben101Scf02982g00007.1	sp|Q8N8Q9|NIPA2_HUMAN	*-**	Magnesium transporter NIPA2	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf00688g02001.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf11581g01013.1	emb|CDY01585.1|	***-	BnaC07g35750D [Brassica napus]		
Niben101Scf10980g00018.1	sp|A4RF61|HSE1_MAGO7	*-*-	Class E vacuolar protein-sorting machinery protein HSE1	IPR008942 (ENTH/VHS)	GO:0006886 (intracellular protein transport)
Niben101Scf08304g05025.1			Unknown protein		
Niben101Scf25021g00003.1	sp|Q10QA2|CCD53_ORYSJ	***-	Cyclin-D5-3	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf02217g07003.1	AT2G25760.2	****	Protein kinase family protein LENGTH=676	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00428g08019.1	AT1G66940.1	***-	protein kinase-related LENGTH=332		
Niben101Scf01648g00012.1	AT2G32910.1	*-*-	DCD (Development and Cell Death) domain protein LENGTH=691	IPR013989 (Development/cell death domain)	
Niben101Scf04362g07011.1	sp|P58051|C71BE_ARATH	***-	Cytochrome P450 71B14	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10887g01011.1	sp|Q54KZ8|EIF3M_DICDI	****	Eukaryotic translation initiation factor 3 subunit M	IPR000717 (Proteasome component (PCI) domain), IPR027528 (Eukaryotic translation initiation factor 3 subunit M)	GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf09112g02005.1	sp|Q9C9Y4|FB136_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf05339g00005.1	sp|Q8BYI6|PCAT2_MOUSE	***-	Lysophosphatidylcholine acyltransferase 2	IPR002123 (Phospholipid/glycerol acyltransferase), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding), GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf04292g13001.1	sp|Q18B61|NUSB_PEPD6	*-*-	N utilization substance protein B homolog	IPR011605 (NusB antitermination factor)	GO:0003723 (RNA binding), GO:0006353 (DNA-templated transcription, termination), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03366g00003.1	sp|A5VAM0|NUOD_SPHWW	--*-	NADH-quinone oxidoreductase subunit D		
Niben101Scf02399g05003.1	sp|Q2Y9R4|CTAA_NITMU	****	Heme A synthase	IPR003780 (COX15/CtaA family)	GO:0006784 (heme a biosynthetic process), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0055114 (oxidation-reduction process)
Niben101Scf27243g00003.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf07048g01001.1	sp|Q6NKW9|E138_ARATH	***-	Glucan endo-1,3-beta-glucosidase 8	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08702g00005.1	sp|O49484|ASK11_ARATH	***-	SKP1-like protein 11	IPR016072 (SKP1 component, dimerisation)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf04558g01010.1	sp|Q0WPZ6|PP158_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf11937g01021.1	sp|F4HW04|DPOE1_ARATH	****	DNA polymerase epsilon catalytic subunit A	IPR006172 (DNA-directed DNA polymerase, family B), IPR013697 (DNA polymerase epsilon, catalytic subunit A, C-terminal)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0008270 (zinc ion binding)
Niben101Scf01270g00002.1	emb|CDX71650.1|	--*-	BnaC09g26910D [Brassica napus]		
Niben101Scf00328g04016.1	ref|NP_973579.1|	--*-	lactoylglutathione lyase / glyoxalase I family protein [Arabidopsis thaliana] gb|AEC08634.1| lactoylglutathione lyase / glyoxalase I family protein [Arabidopsis thaliana]		
Niben101Scf01758g01009.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01556g04007.1	sp|A8GIL6|CBPA_SERP5	--*-	Curved DNA-binding protein	IPR001623 (DnaJ domain)	
Niben101Scf01230g01012.1	ref|XP_002529263.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF33095.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05241g00007.1	sp|Q9SDA8|FBL10_ARATH	***-	F-box/LRR-repeat protein 10	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Ctg03910g00004.1	sp|P07304|TBA1_STYLE	*-*-	Tubulin alpha-1 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf01812g02028.1	sp|Q9H0Z9|RBM38_HUMAN	--**	RNA-binding protein 38	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02831g03001.1	sp|F4I7L1|TRB4_ARATH	****	Telomere repeat-binding factor 4	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf09774g02016.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf01326g09006.1	AT3G28720.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=687		
Niben101Scf05911g00004.1	sp|Q7Y0W3|EHD1_ORYSI	*-*-	Two-component response regulator EHD1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00551g00006.1	emb|CDY66900.1|	--*-	BnaC03g73280D [Brassica napus]		
Niben101Scf03203g13009.1	AT5G13810.1	***-	Glutaredoxin family protein LENGTH=274	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf01964g02018.1			Unknown protein		
Niben101Scf00980g04007.1	AT3G10250.1	***-	Plant protein 1589 of unknown function LENGTH=324	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf03283g04019.1	ref|XP_003626420.1|	--**	IQ domain-containing protein [Medicago truncatula] gb|AES82638.1| IQ calmodulin-binding motif protein [Medicago truncatula]	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf01072g01008.1	AT1G78290.2	****	Protein kinase superfamily protein LENGTH=343	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02074g04032.1	ref|WP_032312319.1|	--*-	reverse transcriptase [Escherichia coli]		
Niben101Scf01078g00028.1	sp|P46640|KNAT2_ARATH	***-	Homeobox protein knotted-1-like 2	IPR005539 (ELK), IPR005540 (KNOX1), IPR005541 (KNOX2), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00046g02008.1	sp|Q6NQK2|NAC8_ARATH	***-	NAC domain-containing protein 8	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01671g03004.1	sp|P24260|METK2_DIACA	****	S-adenosylmethionine synthase 2	IPR002133 (S-adenosylmethionine synthetase)	GO:0004478 (methionine adenosyltransferase activity), GO:0005524 (ATP binding), GO:0006556 (S-adenosylmethionine biosynthetic process)
Niben101Scf06024g02001.1	ref|NP_191672.1|	****	alpha-1,4-galacturon [Arabidopsis thaliana] emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gb|AHL38722.1| glycosyltransferase, partial [Arabidopsis thaliana]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf25696g00001.1	sp|P24315|RL5_THEAQ	***-	50S ribosomal protein L5	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01210g00076.1	sp|P61242|YCF2_SOLLC	*-*-	Protein Ycf2		
Niben101Scf01634g07032.1	AT2G41600.5	****	Mitochondrial glycoprotein family protein LENGTH=220	IPR003428 (Mitochondrial glycoprotein)	GO:0005759 (mitochondrial matrix)
Niben101Scf16511g00015.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf05440g06002.1	AT3G21810.1	*-*-	Zinc finger C-x8-C-x5-C-x3-H type family protein LENGTH=437		
Niben101Scf05490g00002.1	sp|O43001|SYJ1_SCHPO	*-**	Inositol-1,4,5-trisphosphate 5-phosphatase 1	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf05316g02011.1	sp|Q8W119|SMH4_MAIZE	--*-	Single myb histone 4	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf01773g08011.1	sp|F1MK05|RN170_BOVIN	--*-	E3 ubiquitin-protein ligase RNF170	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf20961g00018.1	AT1G26290.1	***-	unknown protein; Has 126 Blast hits to 112 proteins in 36 species: Archae - 0; Bacteria - 6; Metazoa - 14; Fungi - 3; Plants - 14; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). LENGTH=142		
Niben101Scf02756g01009.1	AT3G07350.1	***-	Protein of unknown function (DUF506) LENGTH=298	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf08936g09005.1	sp|Q9SBA5|ITPK1_ARATH	*-**	Inositol-tetrakisphosphate 1-kinase 1	IPR008656 (Inositol-tetrakisphosphate 1-kinase)	GO:0000287 (magnesium ion binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0032957 (inositol trisphosphate metabolic process), GO:0047325 (inositol tetrakisphosphate 1-kinase activity), GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity), GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
Niben101Scf00712g15023.1	sp|O24339|CATA_SOLAP	****	Catalase	IPR002226 (Catalase haem-binding site), IPR010582 (Catalase immune-responsive domain), IPR011614 (Catalase core domain), IPR018028 (Catalase, mono-functional, haem-containing), IPR020835 (Catalase-like domain), IPR024708 (Catalase active site)	GO:0004096 (catalase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03320g03004.1	sp|Q6DW76|DGDG1_SOYBN	***-	Digalactosyldiacylglycerol synthase 1, chloroplastic		
Niben101Scf01834g00008.1	sp|Q9FPT1|UBP12_ARATH	*-*-	Ubiquitin carboxyl-terminal hydrolase 12	IPR024729 (ICP0-binding domain of Ubiquitin-specific protease 7)	
Niben101Scf06890g01022.1	AT4G24190.1	*-*-	Chaperone protein htpG family protein LENGTH=823	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf02752g12002.1	sp|Q4R0H9|PILR1_LINUS	-**-	Bifunctional pinoresinol-lariciresinol reductase 1	IPR016040 (NAD(P)-binding domain)	
Niben101Scf10867g00004.1	sp|Q9ZD61|ISCU_RICPR	****	Iron-sulfur cluster assembly scaffold protein IscU	IPR002871 (NIF system FeS cluster assembly, NifU, N-terminal)	GO:0005506 (iron ion binding), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf03431g00086.1	ref|NP_064026.1|	*-*-	orf145 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] dbj|BAA99337.1| orf145 [Beta vulgaris subsp. vulgaris]		
Niben101Scf04995g17015.1	sp|Q99614|TTC1_HUMAN	*-*-	Tetratricopeptide repeat protein 1	IPR011990 (Tetratricopeptide-like helical domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf01237g01004.1	AT5G05500.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=183	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf10418g00004.1	sp|Q2JNL3|COXX_SYNJB	*-**	Protoheme IX farnesyltransferase	IPR000537 (UbiA prenyltransferase family)	GO:0004659 (prenyltransferase activity), GO:0008495 (protoheme IX farnesyltransferase activity), GO:0016021 (integral component of membrane), GO:0048034 (heme O biosynthetic process)
Niben101Scf04663g04024.1			Unknown protein		
Niben101Scf12205g02009.1	AT4G34980.1	****	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01739g08010.1	gb|AES65140.2|	*-*-	VQ motif protein [Medicago truncatula]	IPR008889 (VQ)	
Niben101Scf05456g01005.1	ref|WP_024970711.1|	--*-	carbamoyl phosphate synthase large subunit [Microcystis aeruginosa]	IPR015157 (Translation machinery associated TMA7)	
Niben101Scf02502g03010.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05111g04004.1	sp|Q9C6W4|BGA15_ARATH	--*-	Beta-galactosidase 15		
Niben101Scf05030g05008.1	sp|P29000|INVA_SOLLC	***-	Acid beta-fructofuranosidase	IPR001362 (Glycoside hydrolase, family 32), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01094g02005.1	sp|Q3UHX2|HAP28_MOUSE	*-*-	28 kDa heat- and acid-stable phosphoprotein	IPR019380 (Casein kinase substrate, phosphoprotein PP28)	
Niben101Scf07580g05015.1	sp|Q8L868|E1311_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 11	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00530g10009.1			Unknown protein		
Niben101Scf02751g07012.1	emb|CDX88419.1|	***-	BnaC06g38630D [Brassica napus]		
Niben101Scf05226g04004.1	AT1G42960.1	***-	expressed protein localized to the inner membrane of the chloroplast. LENGTH=168		
Niben101Scf02835g00003.1	sp|Q9LNW0|HS178_ARATH	--*-	17.8 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf00854g03005.1	sp|A7EKZ0|PAN1_SCLS1	--*-	Actin cytoskeleton-regulatory complex protein pan1		
Niben101Ctg14683g00004.1	sp|P27481|LOXB_PHAVU	*-*-	Linoleate 9S-lipoxygenase	IPR000907 (Lipoxygenase)	GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04727g02010.1	AT3G07700.3	***-	Protein kinase superfamily protein LENGTH=724	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02239g06010.1	sp|Q9NUV9|GIMA4_HUMAN	***-	GTPase IMAP family member 4	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf08273g01002.1	sp|Q5TGY1|TMCO4_HUMAN	*-*-	Transmembrane and coiled-coil domain-containing protein 4	IPR007941 (Protein of unknown function DUF726), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00016g04008.1	sp|Q5ZIL6|TM41B_CHICK	***-	Transmembrane protein 41B		
Niben101Scf10107g00007.1	sp|Q06RA0|RPOA_JASNU	*-**	DNA-directed RNA polymerase subunit alpha	IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain), IPR011262 (DNA-directed RNA polymerase, insert domain)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf03037g00009.1	AT5G25360.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=169	IPR025124 (Domain of unknown function DUF4050)	
Niben101Scf06435g01009.1	AT1G72000.1	*-*-	Plant neutral invertase family protein LENGTH=499	IPR024746 (Glycosyl hydrolase family 100)	GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf14172g00001.1	sp|Q41001|BCP_PEA	--*-	Blue copper protein	IPR008972 (Cupredoxin)	
Niben101Scf04703g08005.1	AT1G62770.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=204	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00282g03017.1	sp|Q10YI1|DAPB_TRIEI	****	4-hydroxy-tetrahydrodipicolinate reductase	IPR011770 (Dihydrodipicolinate reductase, bacterial/plant)	GO:0008839 (4-hydroxy-tetrahydrodipicolinate reductase), GO:0009089 (lysine biosynthetic process via diaminopimelate), GO:0055114 (oxidation-reduction process), GO:0070402 (NADPH binding)
Niben101Scf02955g01007.1	AT5G51790.1	****	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=204	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf12639g01001.1	sp|Q9C7N5|GDL14_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf03231g00001.1			Unknown protein		
Niben101Scf02132g01002.1	sp|P40973|PLY_LILLO	****	Pectate lyase	IPR007524 (Pectate lyase, N-terminal), IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	GO:0030570 (pectate lyase activity)
Niben101Scf02716g00008.1	sp|Q9FPT1|UBP12_ARATH	*-*-	Ubiquitin carboxyl-terminal hydrolase 12		
Niben101Scf00457g13007.1	AT2G36870.1	****	xyloglucan endotransglucosylase/hydrolase 32 LENGTH=299	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf06942g01004.1	sp|Q8LBW3|LBD12_ARATH	*-*-	LOB domain-containing protein 12	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf09696g00022.1	sp|A5G9B9|NUOA2_GEOUR	****	NADH-quinone oxidoreductase subunit A 2	IPR000440 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09100g01004.1	AT5G48170.1	***-	F-box family protein LENGTH=157	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02553g00009.1	sp|O49564|CRK27_ARATH	--*-	Cysteine-rich receptor-like protein kinase 27	IPR002902 (Gnk2-homologous domain)	
Niben101Scf00317g11013.1	AT4G00150.1	*-*-	GRAS family transcription factor LENGTH=558	IPR005202 (Transcription factor GRAS)	
Niben101Scf08472g02005.1	AT4G21380.1	*-**	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf08977g01005.1	sp|Q01440|GTR1_LEIDO	--**	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf05425g00016.1	sp|P92484|NU4M_EQUAS	*-*-	NADH-ubiquinone oxidoreductase chain 4	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf11408g01012.1	AT1G26160.1	*-*-	Metal-dependent phosphohydrolase LENGTH=258	IPR006674 (HD domain)	
Niben101Scf03277g02012.1	sp|P35065|H2A1_TETTS	***-	Histone H2A.1	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf01368g00003.1	sp|Q3T0Q8|UT14A_BOVIN	*-**	U3 small nucleolar RNA-associated protein 14 homolog A	IPR006709 (Small-subunit processome, Utp14)	GO:0006364 (rRNA processing), GO:0032040 (small-subunit processome)
Niben101Scf08391g00003.1	AT2G43500.1	***-	Plant regulator RWP-RK family protein LENGTH=947	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain)	GO:0005515 (protein binding)
Niben101Scf03298g01001.1	gb|ABI34321.1|	*-*-	RNase H family protein [Solanum demissum]		
Niben101Scf02530g05010.1	sp|P21885|SPEA_BACSU	***-	Arginine decarboxylase	IPR008286 (Orn/Lys/Arg decarboxylase, C-terminal), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf04651g00009.1	AT4G32160.1	***-	Phox (PX) domain-containing protein LENGTH=723	IPR001683 (Phox homologous domain)	GO:0035091 (phosphatidylinositol binding)
Niben101Scf03595g15003.1	sp|Q6IP09|PABPB_XENLA	*-**	Polyadenylate-binding protein 1-B	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02778g04008.1	AT1G11390.1	***-	Protein kinase superfamily protein LENGTH=624	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08728g01022.1	AT1G60140.1	*-**	trehalose phosphate synthase LENGTH=861	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf01974g00010.1	sp|Q84W66|NFYB6_ARATH	*-**	Nuclear transcription factor Y subunit B-6	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf07440g00010.1	gb|EPE06672.1|	****	integral membrane mpv17 pmp22 [Ophiostoma piceae UAMH 11346]	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf00152g25010.1			Unknown protein		
Niben101Scf02538g03021.1	AT2G01190.1	*-*-	Octicosapeptide/Phox/Bem1p family protein LENGTH=720	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf00320g02010.1	gb|ACF19789.1|	*-**	NAC transcription factor [Nicotiana tabacum]	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00603g00008.1	sp|P12493|GAG_HV1N5	*-*-	Gag polyprotein	IPR001878 (Zinc finger, CCHC-type), IPR009044 (ssDNA-binding transcriptional regulator), IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003713 (transcription coactivator activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf02444g00036.1	sp|Q5FNQ1|RLME_GLUOX	*-**	Ribosomal RNA large subunit methyltransferase E	IPR015507 (Ribosomal RNA large subunit methyltransferase E), IPR024576 (Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0001510 (RNA methylation), GO:0005634 (nucleus), GO:0006364 (rRNA processing), GO:0008168 (methyltransferase activity), GO:0008649 (rRNA methyltransferase activity), GO:0031167 (rRNA methylation), GO:0032259 (methylation)
Niben101Scf11159g00008.1			Unknown protein		
Niben101Scf05123g00001.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00376g03007.1	sp|Q9CPW5|SSRB_MOUSE	*-*-	Translocon-associated protein subunit beta	IPR008856 (Translocon-associated protein subunit beta)	GO:0005783 (endoplasmic reticulum), GO:0016021 (integral component of membrane)
Niben101Scf10881g00007.1	ref|XP_002534687.1|	*-*-	NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis] gb|EEF27701.1| NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis]		
Niben101Scf05855g05008.1	sp|P81392|MYB06_ANTMA	*-*-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02217g03004.1	sp|Q8DJB1|PFKA_THEEB	****	ATP-dependent 6-phosphofructokinase	IPR000023 (Phosphofructokinase domain), IPR022953 (Phosphofructokinase)	GO:0003872 (6-phosphofructokinase activity), GO:0006002 (fructose 6-phosphate metabolic process), GO:0006096 (glycolytic process)
Niben101Scf08892g00009.1	sp|O60613|SEP15_HUMAN	***-	15 kDa selenoprotein	IPR012336 (Thioredoxin-like fold), IPR014912 (Sep15/SelM redox)	
Niben101Scf02031g00027.1	gb|KEH32482.1|	***-	plant/F27B13-30 protein [Medicago truncatula]	IPR019340 (Histone acetyltransferases subunit 3)	
Niben101Scf01633g00029.1	sp|Q5FWP8|PCID2_XENLA	***-	PCI domain-containing protein 2	IPR013143 (PCI/PINT associated module)	
Niben101Scf02720g04003.1	AT1G67900.1	***-	Phototropic-responsive NPH3 family protein LENGTH=631	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf00339g08017.1	sp|Q8L4D8|IQD31_ARATH	*-*-	Protein IQ-DOMAIN 31	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf01628g02001.1	sp|Q04716|RT03_PETHY	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf03644g03014.1	ref|XP_002510978.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF51580.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05948g00006.1	sp|Q9STF0|LRKS3_ARATH	*-**	Receptor like protein kinase S.3	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021720 (Malectin)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06958g03011.1	sp|Q9SSG3|HIPL1_ARATH	***-	HIPL1 protein	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016901 (oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor), GO:0048038 (quinone binding)
Niben101Scf00159g07004.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Ctg14141g00004.1	sp|Q6LQG2|RIHA_PHOPR	*-*-	Pyrimidine-specific ribonucleoside hydrolase RihA	IPR001910 (Inosine/uridine-preferring nucleoside hydrolase domain), IPR023186 (Inosine/uridine-preferring nucleoside hydrolase)	
Niben101Scf01676g00011.1			Unknown protein		
Niben101Scf02794g06004.1	sp|Q41001|BCP_PEA	*-*-	Blue copper protein	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf01023g07011.1	AT4G03550.1	****	glucan synthase-like 5 LENGTH=1780	IPR003440 (Glycosyl transferase, family 48), IPR026899 (1,3-beta-glucan synthase subunit FKS1-like, domain-1)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf01023g03001.1	emb|CDY18986.1|	--*-	BnaC01g20820D [Brassica napus]		
Niben101Scf03523g01023.1	sp|Q9SVA5|PP357_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02668g05025.1	sp|Q67JH0|FTSH3_SYMTH	*-**	ATP-dependent zinc metalloprotease FtsH 3	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf06077g01001.1	ref|XP_002521725.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF40712.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05332g00007.1	AT5G42220.1	*-*-	Ubiquitin-like superfamily protein LENGTH=879	IPR019956 (Ubiquitin), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf05740g00002.1	sp|P53009|SCY1_YEAST	*-**	Protein kinase-like protein SCY1	IPR011009 (Protein kinase-like domain), IPR016024 (Armadillo-type fold)	GO:0004672 (protein kinase activity), GO:0005488 (binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02425g00018.1	gb|EJY77877.1|	***-	Membrane transporter [Oxytricha trifallax]	IPR021261 (Protein of unknown function DUF2838)	
Niben101Scf11123g00026.1	sp|P51297|SECY_PORPU	*-*-	Protein translocase subunit SecY	IPR002208 (SecY/SEC61-alpha family), IPR023201 (SecY subunit domain)	GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02072g02017.1	AT1G28680.1	****	HXXXD-type acyl-transferase family protein LENGTH=451	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00058g02017.1	gb|AES64309.2|	***-	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf17442g00007.1	sp|P58929|GMEB2_MOUSE	--*-	Glucocorticoid modulatory element-binding protein 2		
Niben101Scf08142g00020.1	sp|B9EBJ1|MIAA_MACCJ	****	tRNA dimethylallyltransferase	IPR018022 (tRNA delta(2)-isopentenylpyrophosphate transferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf05551g03011.1	AT5G62940.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=372	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02074g01001.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf11809g00003.1			Unknown protein		
Niben101Scf00595g04003.1	sp|O80929|RL361_ARATH	***-	60S ribosomal protein L36-1	IPR000509 (Ribosomal protein L36e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08690g00002.1	gb|KEH24630.1|	***-	DUF1442 family protein [Medicago truncatula]	IPR009902 (Protein of unknown function DUF1442), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01063g08025.1	emb|CDY23462.1|	*-*-	BnaC04g49900D [Brassica napus]		
Niben101Scf00497g08006.1	sp|O23491|PP315_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf04528g13014.1	AT4G21270.1	****	kinesin 1 LENGTH=793	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf06909g04008.1	emb|CAE03561.2|	*-*-	OsJ_16109 [Oryza sativa Japonica Group]		
Niben101Scf03000g02012.1	sp|G5EGA6|DHRS4_CAEEL	***-	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	
Niben101Scf06569g01020.1	sp|Q99614|TTC1_HUMAN	*-*-	Tetratricopeptide repeat protein 1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06621g01004.1	sp|Q2YSD6|CLPC_STAAB	*-**	ATP-dependent Clp protease ATP-binding subunit ClpC	IPR001270 (ClpA/B family), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028299 (ClpA/B, conserved site 2)	GO:0005524 (ATP binding)
Niben101Scf00849g01017.1	sp|O28364|RL14_ARCFU	***-	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf12502g00010.1	sp|Q94B77|FH5_ARATH	*-*-	Formin-like protein 5	IPR015425 (Formin, FH2 domain)	
Niben101Scf02595g04007.1	sp|Q2KII6|NGDN_BOVIN	***-	Neuroguidin	IPR007146 (Sas10/Utp3/C1D)	
Niben101Scf00123g01002.1	sp|Q945B4|AOP3L_ARATH	*-**	2-oxoglutarate-dependent dioxygenase AOP3	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01578g00008.1	AT2G41430.1	***-	dehydration-induced protein (ERD15) LENGTH=163	IPR009818 (Ataxin-2, C-terminal)	
Niben101Scf01175g00009.1	sp|Q5JNJ5|ENL1_ORYSJ	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	
Niben101Scf04339g04001.1	sp|Q8BIZ6|SNIP1_MOUSE	*-*-	Smad nuclear-interacting protein 1	IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf08772g01007.1	gb|KEH17617.1|	*-*-	structural constituent of cell wall protein, putative [Medicago truncatula]	IPR010820 (Protein of unknown function DUF1421), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote)	
Niben101Scf08570g02003.1	ref|XP_007016886.1|	***-	Domain of Uncharacterized protein function isoform 6 [Theobroma cacao] gb|EOY34505.1| Domain of Uncharacterized protein function isoform 6 [Theobroma cacao]	IPR010369 (Protein of unknown function DUF966)	
Niben101Scf00051g04002.1	ref|XP_007026070.1|	*-*-	Homer protein isoform 2 [Theobroma cacao] gb|EOY28692.1| Homer protein isoform 2 [Theobroma cacao]		
Niben101Scf00021g00010.1	AT1G14060.1	*-*-	GCK domain-containing protein LENGTH=179	IPR012891 (GCK)	
Niben101Scf04122g06039.1	sp|Q9BUJ2|HNRL1_HUMAN	*-*-	Heterogeneous nuclear ribonucleoprotein U-like protein 1	IPR003877 (SPRY domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf08126g00018.1			Unknown protein		
Niben101Scf00602g00006.1	AT3G06890.1	***-	unknown protein; Has 91 Blast hits to 91 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=128		
Niben101Scf01210g00033.1			Unknown protein		
Niben101Scf02440g01032.1			Unknown protein		
Niben101Ctg01937g00001.1	sp|Q9FHH8|COL5_ARATH	*-**	Zinc finger protein CONSTANS-LIKE 5	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf25768g00017.1	AT3G29770.1	***-	methyl esterase 11 LENGTH=390	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00296g02007.1	sp|Q9FLX3|FB293_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00780g02022.1	ref|XP_002521255.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF41111.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00466g01022.1			Unknown protein		
Niben101Scf04621g00006.1	sp|Q9LTH8|ACH11_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 11	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf05813g04001.1	sp|P93005|PP181_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf16812g00008.1	sp|Q13435|SF3B2_HUMAN	*-*-	Splicing factor 3B subunit 2	IPR006568 (PSP, proline-rich), IPR007180 (Domain of unknown function DUF382)	GO:0005634 (nucleus)
Niben101Scf01972g01002.1	sp|Q9ZQI8|NLTL2_ARATH	*-**	Non-specific lipid-transfer protein-like protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf12017g02001.1	sp|Q9BQ70|TCF25_HUMAN	***-	Transcription factor 25	IPR006994 (Transcription factor 25)	
Niben101Scf02207g12004.1	emb|CDY71112.1|	***-	BnaCnng71370D [Brassica napus]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf01061g07019.1	gb|KGG36516.1|	*-**	Nickel transporter UreH [Prochlorococcus sp. MIT 0703]	IPR011541 (Nickel/cobalt transporter, high-affinity)	GO:0015099 (nickel cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0035444 (nickel cation transmembrane transport), GO:0046872 (metal ion binding)
Niben101Scf05404g03001.1			Unknown protein		
Niben101Scf02290g05025.1	sp|P55200|KMT2A_MOUSE	*-**	Histone-lysine N-methyltransferase 2A	IPR015722 (Histone-lysine N-methyltransferase Trr)	GO:0005515 (protein binding), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0051568 (histone H3-K4 methylation)
Niben101Scf00592g01002.1	sp|Q8NBU5|ATAD1_HUMAN	*-*-	ATPase family AAA domain-containing protein 1	IPR003959 (ATPase, AAA-type, core), IPR021911 (ATPase family AAA domain-containing protein 3, domain of unknown function DUF3523), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01374g02008.1	sp|Q5R5B6|PDIA1_PONAB	***-	Protein disulfide-isomerase	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf08326g00049.1	sp|B0K8G4|RS6_THEP3	--*-	30S ribosomal protein S6	IPR014717 (Translation elongation factor EF1B/ribosomal protein S6)	
Niben101Scf05592g00018.1	sp|Q504N0|CBPA2_MOUSE	-***	Carboxypeptidase A2	IPR000834 (Peptidase M14, carboxypeptidase A)	GO:0004181 (metallocarboxypeptidase activity), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding)
Niben101Scf06311g01001.1	sp|Q9LMJ1|CHX14_ARATH	****	Cation/H(+) antiporter 14	IPR001876 (Zinc finger, RanBP2-type), IPR006153 (Cation/H+ exchanger), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR030153 (Cation/H(+) exchanger, plant)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0008270 (zinc ion binding), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00854g03047.1	sp|Q2G8Y5|RS12_NOVAD	****	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf02979g02007.1			Unknown protein		
Niben101Scf03671g03006.1	sp|Q6EP49|MAD27_ORYSJ	****	MADS-box transcription factor 27	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03224g03001.1	sp|Q93WP8|HSYA_TOBAC	***-	Hydroxyproline-rich systemin A		
Niben101Scf17612g01007.1	AT3G59660.1	*-*-	C2 domain-containing protein / GRAM domain-containing protein LENGTH=594	IPR000008 (C2 domain), IPR004182 (GRAM domain)	GO:0005515 (protein binding)
Niben101Scf05883g00008.1	sp|C4XGC2|NQOR_DESMR	***-	NAD(P)H dehydrogenase (quinone)	IPR010089 (Flavoprotein WrbA), IPR029039 (Flavoprotein-like)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0045892 (negative regulation of transcription, DNA-templated)
Niben101Ctg13514g00004.1	ref|WP_029248792.1|	*-*-	alpha/beta hydrolase [Mycobacterium avium]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01574g04011.1	sp|Q9LTT8|VCS_ARATH	--*-	Enhancer of mRNA-decapping protein 4		
Niben101Scf06734g01027.1	sp|Q9ZUI6|AP1G2_ARATH	*-*-	AP-1 complex subunit gamma-2	IPR016024 (Armadillo-type fold), IPR017107 (Adaptor protein complex AP-1, gamma subunit)	GO:0005488 (binding), GO:0005794 (Golgi apparatus), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf05206g06009.1	sp|O43304|S14L5_HUMAN	*-*-	SEC14-like protein 5	IPR001251 (CRAL-TRIO domain)	
Niben101Scf02063g07001.1	sp|Q9FIC6|GL117_ARATH	***-	Germin-like protein subfamily 1 member 17	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf05820g01011.1	AT4G14920.1	****	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein LENGTH=1138	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008080 (N-acetyltransferase activity), GO:0008270 (zinc ion binding)
Niben101Scf10326g00005.1	sp|Q9ZP55|DRP4C_ARATH	*-*-	Dynamin-related protein 4C	IPR022812 (Dynamin superfamily)	
Niben101Scf01534g01005.1			Unknown protein		
Niben101Scf04951g03016.1	ref|XP_002534687.1|	*-*-	NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis] gb|EEF27701.1| NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis]		
Niben101Scf08285g00009.1	AT5G03490.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=465	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05431g02006.1	AT5G67610.2	***-	Uncharacterized conserved protein (DUF2215) LENGTH=498	IPR019358 (Transmembrane protein 194)	
Niben101Scf01436g03011.1			Unknown protein		
Niben101Scf03906g03013.1	sp|Q0IHQ8|STK10_XENTR	*-**	Serine/threonine-protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07069g01004.1	AT5G57580.1	***-	Calmodulin-binding protein LENGTH=647	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf04783g10001.1	sp|Q0CT01|TVP38_ASPTN	--*-	Golgi apparatus membrane protein tvp38		
Niben101Scf03300g01001.1			Unknown protein		
Niben101Scf01237g00013.1	AT1G07160.1	****	Protein phosphatase 2C family protein LENGTH=380	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf13141g02011.1	gb|AET02010.2|	*-*-	P-loop nucleoside triphosphate hydrolase superfamily protein, putative [Medicago truncatula]	IPR025753 (AAA-type ATPase, N-terminal domain)	
Niben101Scf07741g01006.1	sp|Q54VZ8|EXOC8_DICDI	***-	Exocyst complex component 8	IPR016159 (Cullin repeat-like-containing domain)	
Niben101Scf00311g05003.1			Unknown protein		
Niben101Scf15760g00012.1	sp|Q9SCU0|SDR2A_ARATH	****	Short-chain dehydrogenase reductase 2a	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf04473g00003.1	AT3G05640.1	***-	Protein phosphatase 2C family protein LENGTH=358	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf06866g01012.1	sp|Q5PQS6|SMG9_RAT	***-	Protein SMG9	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01887g08020.1	sp|Q9FJZ9|PER72_ARATH	****	Peroxidase 72	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03468g03003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07709g01019.1	sp|A5PK19|MET13_BOVIN	*-*-	Methyltransferase-like protein 13	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf02606g05019.1	AT2G33320.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=602	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf05158g01069.1	sp|Q39103|G3OX1_ARATH	*-*-	Gibberellin 3-beta-dioxygenase 1		
Niben101Scf03051g00009.1	sp|Q9FJD5|LAC17_ARATH	***-	Laccase-17	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07645g01009.1	AT3G11470.2	***-	4'-phosphopantetheinyl transferase superfamily LENGTH=300	IPR008278 (4'-phosphopantetheinyl transferase superfamily)	GO:0000287 (magnesium ion binding), GO:0008897 (holo-[acyl-carrier-protein] synthase activity), GO:0009059 (macromolecule biosynthetic process)
Niben101Scf32174g00002.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf15994g00004.1	sp|Q9SIW1|BLH7_ARATH	*-*-	BEL1-like homeodomain protein 7	IPR006563 (POX domain)	
Niben101Scf01369g03006.1	ref|YP_009045802.1|	***-	orf101b (mitochondrion) [Batis maritima] gb|AIC83405.1| orf101b (mitochondrion) [Batis maritima]		
Niben101Scf02054g02010.1	sp|Q6E263|CRR39_ARATH	***-	Cysteine-rich repeat secretory protein 39	IPR002902 (Gnk2-homologous domain)	
Niben101Scf03213g02014.1	sp|Q06AK6|TFP11_PIG	***-	Tuftelin-interacting protein 11	IPR000467 (G-patch domain), IPR022159 (Tuftelin interacting protein, N-terminal domain), IPR022783 (GC-rich sequence DNA-binding factor domain), IPR024933 (Septin and tuftelin interacting protein)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01661g01017.1	ref|XP_002512024.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF50693.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05800g02006.1			Unknown protein		
Niben101Scf21574g00014.1	AT4G22140.1	***-	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein LENGTH=234	IPR001025 (Bromo adjacent homology (BAH) domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02420g00002.1	sp|O57882|PGK2_PYRHO	*-*-	2-phosphoglycerate kinase	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01983g04021.1	ref|XP_002522268.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF40126.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf15051g00004.1	sp|C4R192|VPS10_PICPG	--*-	Vacuolar protein sorting/targeting protein 10		
Niben101Scf03659g08002.1	ref|XP_002510409.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF52596.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00288g06020.1	AT5G58430.1	****	exocyst subunit exo70 family protein B1 LENGTH=624	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf02408g04020.1	sp|B4TMG8|AES_SALSV	*-*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf04114g02085.1			Unknown protein		
Niben101Scf00327g01037.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06267g03017.1	sp|Q8LCP6|GUN10_ARATH	*-*-	Endoglucanase 10	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00024g04002.1	emb|CDY19669.1|	--*-	BnaC09g29250D [Brassica napus]	IPR022546 (Uncharacterised protein family Ycf68)	
Niben101Scf03572g02001.1	gb|AES69785.2|	***-	alpha/beta fold hydrolase [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02169g03009.1	sp|P81898|PNAA_PRUDU	***-	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A	IPR021102 (Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A)	
Niben101Scf04133g02033.1	sp|Q9LUJ2|PP249_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01208g02001.1	sp|Q6YXM7|CLPP_PHYPA	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf27139g00022.1	AT2G05590.2	*-*-	TLD-domain containing nucleolar protein LENGTH=303	IPR006571 (TLDc domain)	
Niben101Scf03027g02008.1	sp|Q68WM5|MIAA_RICTY	--*-	tRNA dimethylallyltransferase		
Niben101Scf01068g06005.1	gb|AAD24658.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf00687g02005.1	AT3G62260.2	****	Protein phosphatase 2C family protein LENGTH=384	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf01160g01012.1	sp|P12331|CB22_ORYSJ	***-	Chlorophyll a-b binding protein 2, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf01062g03017.1	sp|Q9M099|SCP24_ARATH	*-**	Serine carboxypeptidase 24	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01378g00004.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02315g01009.1	sp|P62191|PRS4_HUMAN	*-*-	26S protease regulatory subunit 4	IPR003959 (ATPase, AAA-type, core), IPR005938 (AAA ATPase, CDC48 family), IPR009010 (Aspartate decarboxylase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029067 (CDC48 domain 2-like)	GO:0005524 (ATP binding), GO:0016787 (hydrolase activity)
Niben101Scf14566g01008.1	AT5G17420.1	****	Cellulose synthase family protein LENGTH=1026	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf06423g03002.1	ref|NP_001190486.1|	--*-	Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana] gb|AED95567.1| Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]		
Niben101Scf03012g03010.1	sp|Q9C723|NADE_ARATH	*-*-	Glutamine-dependent NAD(+) synthetase	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf07788g04024.1	gb|AHF62658.1|	--*-	integral membrane protein MviN [Synechococcus sp. WH 8109]	IPR004268 (Flagellin assembly, membrane protein MviN)	
Niben101Scf04120g00001.1	ref|XP_007049519.1|	***-	Mediator of RNA polymerase II transcription subunit 19 [Theobroma cacao] gb|EOX93676.1| Mediator of RNA polymerase II transcription subunit 19 [Theobroma cacao]		
Niben101Scf14551g00004.1	sp|Q6PDK2|KMT2D_MOUSE	*-*-	Histone-lysine N-methyltransferase 2D	IPR001214 (SET domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01175g06002.1	AT5G10270.1	*-**	cyclin-dependent kinase C;1 LENGTH=505	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03232g01003.1	emb|CDX72044.1|	--*-	BnaC08g28300D [Brassica napus]		
Niben101Scf09808g00015.1	sp|P10538|AMYB_SOYBN	*-**	Beta-amylase	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf03614g01005.1	AT1G08030.1	****	tyrosylprotein sulfotransferase LENGTH=500	IPR010635 (Heparan sulphate 6-sulfotransferase/Protein-tyrosine sulfotransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity), GO:0016021 (integral component of membrane)
Niben101Scf00854g05027.1			Unknown protein		
Niben101Scf01830g00008.1	sp|F4I878|BLT_ARATH	***-	Protein BRANCHLESS TRICHOME		
Niben101Scf14922g00011.1	sp|Q9LNJ9|FKGP_ARATH	***-	Bifunctional fucokinase/fucose pyrophosphorylase	IPR006206 (Mevalonate/galactokinase), IPR012887 (L-fucokinase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf01594g02011.1	sp|P46903|NATA_BACSU	*-**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf06529g01004.1	sp|Q53FV1|ORML2_HUMAN	***-	ORM1-like protein 2	IPR007203 (ORMDL family)	GO:0005789 (endoplasmic reticulum membrane), GO:0016021 (integral component of membrane)
Niben101Scf01225g04016.1	sp|P49210|RL9_ORYSJ	***-	60S ribosomal protein L9	IPR000702 (Ribosomal protein L6)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf01318g00004.1	sp|Q9ST43|PH1_ARATH	***-	Pleckstrin homology domain-containing protein 1	IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf00570g04006.1	ref|XP_002524397.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38008.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00049g01012.1	AT4G19420.1	*-*-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf02824g03016.1			Unknown protein		
Niben101Scf00408g11015.1	sp|Q15415|RBY1F_HUMAN	--**	RNA-binding motif protein, Y chromosome, family 1 member F/J	IPR006569 (CID domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf15710g00006.1	AT4G02940.1	*-*-	oxidoreductase, 2OG-Fe(II) oxygenase family protein LENGTH=569	IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	
Niben101Scf03580g00003.1	AT2G36430.1	***-	Plant protein of unknown function (DUF247) LENGTH=448	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf05203g03013.1	sp|E7F6F9|KLHL3_DANRE	*-*-	Kelch-like protein 3	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf06077g05011.1	AT5G63870.2	***-	serine/threonine phosphatase 7 LENGTH=413	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf01999g03013.1	ref|XP_003624917.1|	***-	Two-component response regulator ARR1 [Medicago truncatula] gb|ABN09175.1| Homeodomain-related [Medicago truncatula] gb|AES81135.1| MYB-like transcription factor family protein [Medicago truncatula]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00762g00006.1	AT5G19010.1	*-**	mitogen-activated protein kinase 16 LENGTH=567	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12919g00032.1	sp|Q9UY49|IMDH_PYRAB	*-*-	Inosine-5'-monophosphate dehydrogenase	IPR000644 (CBS domain)	
Niben101Scf09751g00010.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03860g05001.1	gb|ADD00710.1|	***-	ataxin 3 variant ref [Homo sapiens]	IPR006155 (Machado-Joseph disease protein MJD)	GO:0008242 (omega peptidase activity)
Niben101Scf24096g00020.1	sp|Q9Z1S0|BUB1B_MOUSE	*-*-	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	IPR015661 (Mitotic checkpoint serine/threonine protein kinase Bub1/Mitotic spindle checkpoint component Mad3)	
Niben101Scf03546g01006.1	AT5G64360.3	*-*-	Chaperone DnaJ-domain superfamily protein LENGTH=464	IPR001623 (DnaJ domain)	
Niben101Scf00747g01011.1	sp|Q9LTR9|NMT1_ARATH	****	Glycylpeptide N-tetradecanoyltransferase 1	IPR000903 (Myristoyl-CoA:protein N-myristoyltransferase)	GO:0004379 (glycylpeptide N-tetradecanoyltransferase activity), GO:0006499 (N-terminal protein myristoylation)
Niben101Scf05391g02005.1	sp|P68429|H32_MEDSA	***-	Histone H3.2	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Ctg08008g00002.1	AT1G29500.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf05617g00017.1	sp|Q2V3E2|YIPL5_ARATH	***-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf09005g00015.1	emb|CDX82852.1|	--*-	BnaC01g13020D [Brassica napus]		
Niben101Scf00165g09002.1			Unknown protein		
Niben101Scf12159g05010.1	AT5G26110.1	****	Protein kinase superfamily protein LENGTH=226	IPR011009 (Protein kinase-like domain), IPR022495 (Serine/threonine-protein kinase Bud32)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf39510g00001.1	AT2G22620.1	***-	Rhamnogalacturonate lyase family protein LENGTH=677	IPR008979 (Galactose-binding domain-like), IPR010325 (Rhamnogalacturonate lyase), IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0030246 (carbohydrate binding)
Niben101Scf09030g03002.1	emb|CDY29579.1|	*-*-	BnaA03g54240D [Brassica napus]	IPR008889 (VQ)	
Niben101Scf01734g01047.1	sp|Q06022|RBL_BETPA	****	Ribulose bisphosphate carboxylase large chain	IPR000685 (Ribulose bisphosphate carboxylase, large subunit, C-terminal), IPR017443 (Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf03455g04002.1	gb|AIE74908.1|	***-	IMP dehydrogenase/GMP reductase [Synechocystis sp. PCC 6714]	IPR007570 (Uncharacterised protein family Ycf23), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf02015g05007.1	AT2G23840.1	****	HNH endonuclease LENGTH=284	IPR003615 (HNH nuclease)	GO:0003676 (nucleic acid binding), GO:0004519 (endonuclease activity)
Niben101Scf14634g01004.1			Unknown protein		
Niben101Scf01511g01007.1	sp|Q56X05|PPR15_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01574g04013.1	ref|XP_002521832.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF40468.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03687g01001.1	sp|P30819|NADC_PSEAE	****	Nicotinate-nucleotide pyrophosphorylase [carboxylating]	IPR004393 (Nicotinate-nucleotide pyrophosphorylase)	GO:0003824 (catalytic activity), GO:0004514 (nicotinate-nucleotide diphosphorylase (carboxylating) activity), GO:0009435 (NAD biosynthetic process), GO:0016763 (transferase activity, transferring pentosyl groups), GO:0019363 (pyridine nucleotide biosynthetic process)
Niben101Scf01131g00013.1	sp|Q9STX1|ACBP3_ARATH	--**	Acyl-CoA-binding domain-containing protein 3	IPR014352 (FERM/acyl-CoA-binding protein, 3-helical bundle)	GO:0000062 (fatty-acyl-CoA binding)
Niben101Scf07026g00016.1	AT5G52820.1	***-	WD-40 repeat family protein / notchless protein, putative LENGTH=473	IPR012972 (NLE), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf00612g02005.1	sp|P81391|MYB05_ANTMA	*-*-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01130g01014.1	sp|Q9FL12|DEGP9_ARATH	*-*-	Protease Do-like 9	IPR000552 (Ribosomal protein L44e), IPR001940 (Peptidase S1C), IPR009003 (Trypsin-like cysteine/serine peptidase domain), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0003824 (catalytic activity), GO:0004252 (serine-type endopeptidase activity), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0006508 (proteolysis)
Niben101Scf00526g01006.1	sp|A4QL86|PSBA_LEPVR	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf02913g00011.1	sp|Q42881|1A13_SOLLC	*-*-	1-aminocyclopropane-1-carboxylate synthase 3	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00071g05019.1	sp|Q6VNB8|WDFY3_MOUSE	*-*-	WD repeat and FYVE domain-containing protein 3	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf03716g02004.1	AT5G01130.1	***-	Protein of unknown function (DUF674) LENGTH=452	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf02564g09003.1	AT1G51580.1	****	RNA-binding KH domain-containing protein LENGTH=621	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Ctg16348g00001.1	AT5G48930.1	*-**	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase LENGTH=433	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00109g03002.1	ref|XP_002869709.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH45968.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf06158g01002.1	AT4G18930.1	****	RNA ligase/cyclic nucleotide phosphodiesterase family protein LENGTH=181	IPR009097 (RNA ligase/cyclic nucleotide phosphodiesterase), IPR012386 (2',3'-cyclic-nucleotide 3'-phosphodiesterase)	GO:0004112 (cyclic-nucleotide phosphodiesterase activity)
Niben101Scf11355g01019.1	sp|Q9LFS2|GEX3_ARATH	*-*-	Protein GAMETE EXPRESSED 3		
Niben101Scf06337g00016.1			Unknown protein		
Niben101Scf05437g04016.1	AT5G50210.1	****	quinolinate synthase LENGTH=718	IPR003473 (Quinolinate synthetase A), IPR003808 (Fe-S metabolism associated domain, SufE-like)	GO:0008987 (quinolinate synthetase A activity), GO:0009435 (NAD biosynthetic process), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf01181g00021.1	sp|Q949S9|SPF27_ARATH	****	Pre-mRNA-splicing factor SPF27 homolog	IPR008409 (Pre-mRNA-splicing factor SPF27)	GO:0006397 (mRNA processing)
Niben101Scf01119g02007.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf03045g14001.1	sp|Q9FE67|ERF80_ARATH	*-**	Ethylene-responsive transcription factor 9	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf12154g01009.1	sp|Q4R888|HS71L_MACFA	***-	Heat shock 70 kDa protein 1-like	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf03643g02070.1			Unknown protein		
Niben101Scf14606g00003.1			Unknown protein		
Niben101Scf02831g03004.1	sp|Q7RBX5|KC1_PLAYO	****	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03444g00001.1			Unknown protein		
Niben101Scf01221g17005.1	sp|Q55721|FBT_SYNY3	***-	Folate-biopterin transporter	IPR004324 (Folate-biopterin transporter), IPR020846 (Major facilitator superfamily domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf06628g00005.1	sp|P24794|COX1_BETVU	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05690g01003.1	emb|CDY45320.1|	-**-	BnaA03g52930D [Brassica napus] emb|CDX72492.1| BnaC07g45140D [Brassica napus]		
Niben101Scf01334g06029.1			Unknown protein		
Niben101Scf00508g05002.1	sp|Q67QB5|SAT_SYMTH	*-**	Sulfate adenylyltransferase	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR015947 (PUA-like domain)	GO:0004781 (sulfate adenylyltransferase (ATP) activity)
Niben101Scf03027g02005.1	sp|A5F937|RLME_VIBC3	*-**	Ribosomal RNA large subunit methyltransferase E	IPR015507 (Ribosomal RNA large subunit methyltransferase E), IPR024576 (Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0001510 (RNA methylation), GO:0005634 (nucleus), GO:0006364 (rRNA processing), GO:0008168 (methyltransferase activity), GO:0008649 (rRNA methyltransferase activity), GO:0031167 (rRNA methylation), GO:0032259 (methylation)
Niben101Scf01070g03003.1	sp|Q9YGP5|RBPMS_XENLA	*-**	RNA-binding protein with multiple splicing	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR024888 (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'')	GO:0000166 (nucleotide binding), GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0017069 (snRNA binding)
Niben101Scf00372g02013.1			Unknown protein		
Niben101Scf00466g03018.1	sp|P28475|S6PD_MALDO	***-	NADP-dependent D-sorbitol-6-phosphate dehydrogenase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07001g01010.1	sp|O80436|PTR29_ARATH	*-*-	Protein NRT1/ PTR FAMILY 5.5		
Niben101Scf05019g00011.1			Unknown protein		
Niben101Scf04124g05014.1	sp|Q8LG10|GAT15_ARATH	***-	GATA transcription factor 15		
Niben101Scf00726g02001.1	sp|O94808|GFPT2_HUMAN	****	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2	IPR005855 (Glucosamine-fructose-6-phosphate aminotransferase, isomerising), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004360 (glutamine-fructose-6-phosphate transaminase (isomerizing) activity), GO:0005975 (carbohydrate metabolic process), GO:0008152 (metabolic process), GO:0016051 (carbohydrate biosynthetic process), GO:0030246 (carbohydrate binding)
Niben101Scf12317g00016.1	sp|Q9STE1|PP333_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02757g03009.1	sp|Q05B92|TFE3_BOVIN	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04406g05002.1			Unknown protein		
Niben101Scf00149g08003.1	dbj|BAA76516.1|	-**-	HR7 [Hyoscyamus niger]		
Niben101Scf00180g04010.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05516g04011.1	sp|B5WWZ8|FAO1_LOTJA	*-**	Long-chain-alcohol oxidase FAO1	IPR012400 (Alcohol dehydrogenase, long-chain fatty)	GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0046577 (long-chain-alcohol oxidase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07187g01001.1	sp|Q5PNS0|Y3228_ARATH	*-*-	PHD finger protein	IPR001025 (Bromo adjacent homology (BAH) domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00073g03015.1	gb|AAU95633.1|	***-	R1 [Solanum tuberosum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf09698g01032.1	sp|Q84LH3|WEX_ARATH	--*-	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf12159g09005.1	sp|Q94AY3|DRIP2_ARATH	*-*-	E3 ubiquitin protein ligase DRIP2		
Niben101Scf02840g04014.1			Unknown protein		
Niben101Scf04411g01027.1	sp|Q9SF23|FOLB1_ARATH	****	Dihydroneopterin aldolase	IPR006157 (Dihydroneopterin aldolase/epimerase domain)	GO:0004150 (dihydroneopterin aldolase activity), GO:0006760 (folic acid-containing compound metabolic process)
Niben101Scf13259g00025.1	AT1G07890.3	****	ascorbate peroxidase 1 LENGTH=250	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03045g00014.1	sp|Q9HC62|SENP2_HUMAN	*-*-	Sentrin-specific protease 2	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00674g06002.1	AT3G51280.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=430	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01324g00004.1	gb|AEB39994.1|	*-**	cytochrome c biogenesis factor N [Funaria hygrometrica]	IPR002541 (Cytochrome c assembly protein), IPR003567 (Cytochrome c-type biogenesis protein)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf01213g00020.1	AT4G32050.1	***-	neurochondrin family protein LENGTH=618	IPR008709 (Neurochondrin)	
Niben101Scf26225g00007.1	AT5G45540.1	***-	Protein of unknown function (DUF594) LENGTH=803	IPR025315 (Domain of unknown function DUF4220)	
Niben101Scf04899g01016.1	sp|A2XW69|BRE1A_ORYSI	--*-	E3 ubiquitin-protein ligase BRE1-like 1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04083g03015.1	AT5G53060.1	****	RNA-binding KH domain-containing protein LENGTH=652	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf00497g02005.1	sp|Q9LQL2|PTR14_ARATH	***-	Protein NRT1/ PTR FAMILY 7.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf06394g08018.1	AT5G38200.1	****	Class I glutamine amidotransferase-like superfamily protein LENGTH=436	IPR011697 (Peptidase C26), IPR029062 (Class I glutamine amidotransferase-like)	GO:0006541 (glutamine metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf35850g00003.1	sp|P27898|MYBP_MAIZE	*-*-	Myb-related protein P	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf11331g00003.1	sp|Q9LQ16|PPR94_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00837g00016.1	sp|Q9STF0|LRKS3_ARATH	****	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03857g02002.1	AT4G15830.1	***-	ARM repeat superfamily protein LENGTH=296	IPR016024 (Armadillo-type fold), IPR024395 (CLASP N-terminal domain)	GO:0005488 (binding)
Niben101Scf03366g00004.1	sp|Q5U5Q3|MEX3C_HUMAN	*-**	RNA-binding E3 ubiquitin-protein ligase MEX3C	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06616g00001.1	gb|AES92006.2|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf02511g06016.1	AT5G24130.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). LENGTH=316		
Niben101Scf01062g01021.1	sp|Q9QZH7|FXL20_RAT	***-	F-box/LRR-repeat protein 20	IPR001611 (Leucine-rich repeat), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf01664g05010.1	ref|NP_001068433.1|	*-*-	product [Oryza sativa Japonica Group]	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf10169g03008.1	gb|ABD66598.1|	****	iron-binding protein [Pyrus pyrifolia]	IPR001519 (Ferritin), IPR008331 (Ferritin/DPS protein domain), IPR009078 (Ferritin-like superfamily)	GO:0006826 (iron ion transport), GO:0006879 (cellular iron ion homeostasis), GO:0008199 (ferric iron binding)
Niben101Scf06081g03013.1	sp|A9BJK3|FTSH3_PETMO	****	ATP-dependent zinc metalloprotease FtsH 3	IPR003959 (ATPase, AAA-type, core), IPR005936 (Peptidase, FtsH), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf09170g00001.1	sp|Q9LNQ1|TI231_ARATH	***-	Mitochondrial import inner membrane translocase subunit TIM23-1	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Scf01013g08006.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf02996g04001.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf04549g08001.1			Unknown protein		
Niben101Scf02361g02001.1	sp|Q9XJ60|MAD50_ORYSJ	****	MADS-box transcription factor 50	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf28150g00001.1			Unknown protein		
Niben101Scf06570g03019.1	sp|B2HCT8|RS5_MYCMM	*-*-	30S ribosomal protein S5	IPR000851 (Ribosomal protein S5)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf15077g01011.1	AT3G55880.2	*-*-	Alpha/beta hydrolase related protein LENGTH=215	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02073g03007.1	sp|Q9T072|BH025_ARATH	*-*-	Transcription factor bHLH25	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf12305g00011.1	gb|AEW48209.1|	*-*-	disease resistance protein RGH5 [Solanum huancabambense]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf06382g01001.1	emb|CDY21524.1|	***-	BnaC09g47680D [Brassica napus]		
Niben101Scf00905g09006.1	ref|XP_007011630.1|	****	DNA binding protein, putative isoform 1 [Theobroma cacao] gb|EOY29249.1| DNA binding protein, putative isoform 1 [Theobroma cacao]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf02077g13016.1	AT4G14940.1	****	amine oxidase 1 LENGTH=650	IPR000269 (Copper amine oxidase)	GO:0005507 (copper ion binding), GO:0008131 (primary amine oxidase activity), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05157g00007.1	ref|XP_007015757.1|	*-*-	NF-kappa-B inhibitor-like protein 2 isoform 2 [Theobroma cacao] gb|EOY33376.1| NF-kappa-B inhibitor-like protein 2 isoform 2 [Theobroma cacao]		
Niben101Scf03375g02030.1	AT4G00990.1	***-	Transcription factor jumonji (jmjC) domain-containing protein LENGTH=840	IPR003347 (JmjC domain)	
Niben101Scf11266g03005.1	gb|AEM24937.1|	***-	thionin-like protein [Nicotiana tabacum]		
Niben101Scf00262g02011.1	sp|C0Q9U6|RL17_DESAH	***-	50S ribosomal protein L17	IPR000456 (Ribosomal protein L17)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf19922g00001.1	emb|CDY66152.1|	***-	BnaAnng21740D [Brassica napus]		
Niben101Scf10354g00004.1	AT3G62820.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=194	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf04172g04012.1	AT4G28706.4	***-	pfkB-like carbohydrate kinase family protein LENGTH=440	IPR029056 (Ribokinase-like)	GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00117g02022.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf03038g17019.1			Unknown protein		
Niben101Scf03059g00013.1	sp|O22183|U84B2_ARATH	***-	UDP-glycosyltransferase 84B2	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf12585g00001.1	gb|ABU50826.1|	*-*-	GAGA-binding transcriptional activator [Arabidopsis arenosa]	IPR010409 (GAGA-binding transcriptional activator)	
Niben101Scf06187g00006.1	ref|NP_001045280.1|	***-	product [Oryza sativa Japonica Group]	IPR022227 (Protein of unknown function DUF3754)	
Niben101Scf00751g02006.1	ref|XP_003593019.1|	***-	Membralin [Medicago truncatula] gb|AES63270.1| S3 self-incompatibility locus-linked pollen 3.15 protein [Medicago truncatula]	IPR019144 (Membralin)	
Niben101Scf08304g05024.1			Unknown protein		
Niben101Scf02207g03006.1	sp|Q8L8Q3|LBD25_ARATH	***-	LOB domain-containing protein 25	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf00952g03013.1	sp|Q9QXX0|JAG1_MOUSE	--*-	Protein jagged-1		
Niben101Ctg11053g00002.1	sp|Q03461|NLTP2_TOBAC	****	Non-specific lipid-transfer protein 2	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf05519g02002.1	sp|Q10UW6|PEBB_TRIEI	****	Phycoerythrobilin:ferredoxin oxidoreductase	IPR009249 (Ferredoxin-dependent bilin reductase)	GO:0010024 (phytochromobilin biosynthetic process), GO:0016636 (oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor), GO:0050897 (cobalt ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02565g02004.1	AT5G53130.1	*-*-	cyclic nucleotide gated channel 1 LENGTH=716	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf15995g04003.1	AT1G48880.1	***-	TRICHOME BIREFRINGENCE-LIKE 7 LENGTH=445	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf00167g00012.1	sp|Q43317|CYSK_CITLA	***-	Cysteine synthase	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme)	
Niben101Scf01626g03013.1	sp|Q9LYN8|EXS_ARATH	*-*-	Leucine-rich repeat receptor protein kinase EXS	IPR025875 (Leucine rich repeat 4)	
Niben101Scf02581g05010.1	sp|Q3J5H6|GLND_RHOS4	--*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme		
Niben101Scf02056g03001.1	ref|WP_010166555.1|	***-	glyoxalase [Pseudomonas sp. PAMC 25886]	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf00018g02004.1	sp|P48416|CP10_LYMST	*-*-	Cytochrome P450 10	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01152g02012.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf07894g01004.1	ref|XP_002881577.1|	*-**	DNA binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH57836.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf11609g02002.1	sp|Q43358|VCL_THECC	***-	Vicilin	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf01634g02034.1	sp|P30925|EF2_SULSO	*-*-	Elongation factor 2	IPR000640 (Translation elongation factor EFG, V domain), IPR009022 (Elongation factor G, III-V domain), IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0005525 (GTP binding)
Niben101Scf04362g07010.1	sp|Q9LUE2|TPS18_ARATH	*-**	Terpenoid synthase 18	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf08724g05004.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf06790g00021.1			Unknown protein		
Niben101Scf01278g11013.1	sp|Q8LGM7|MOCOS_SOLLC	*-**	Molybdenum cofactor sulfurase	IPR005302 (Molybdenum cofactor sulfurase, C-terminal)	GO:0003824 (catalytic activity), GO:0030151 (molybdenum ion binding), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf07239g01004.1	sp|Q9LUB7|OBE2_ARATH	--*-	Protein OBERON 2		
Niben101Scf02736g01011.1	sp|P14009|14KD_DAUCA	--*-	14 kDa proline-rich protein DC2.15		
Niben101Scf09774g02017.1	sp|B9MDJ8|DNAJ_ACIET	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf09372g03008.1	sp|Q0T7A9|AES_SHIF8	*-*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf08936g09007.1	sp|Q9M0N8|MZT1B_ARATH	***-	Mitotic-spindle organizing protein 1B	IPR022214 (Protein of unknown function DUF3743)	
Niben101Scf05206g03007.1	sp|O80642|PGTB1_ARATH	***-	Geranylgeranyl transferase type-1 subunit beta	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0003824 (catalytic activity)
Niben101Scf02218g01009.1	sp|P93011|PP182_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01064g05007.1	sp|Q8VY22|TBL38_ARATH	***-	Protein trichome birefringence-like 38	IPR026057 (PC-Esterase)	
Niben101Scf07826g03006.1	sp|Q9KQH9|FABF_VIBCH	***-	3-oxoacyl-[acyl-carrier-protein] synthase 2	IPR017568 (3-oxoacyl-[acyl-carrier-protein] synthase 2), IPR020841 (Polyketide synthase, beta-ketoacyl synthase domain)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01376g04033.1	gb|AAG31014.1|	*-*-	tospovirus resistance protein B [Solanum lycopersicum]		
Niben101Scf00321g05004.1	sp|Q6NLY8|HA22K_ARATH	*-*-	HVA22-like protein k		
Niben101Scf00094g02004.1	sp|Q8LG10|GAT15_ARATH	****	GATA transcription factor 15	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07162g05019.1	AT3G48140.1	***-	B12D protein LENGTH=88	IPR010530 (NADH-ubiquinone reductase complex 1 MLRQ subunit)	
Niben101Scf13916g00002.1	sp|Q6NS23|TRM11_XENLA	****	tRNA (guanine(10)-N2)-methyltransferase homolog	IPR002052 (DNA methylase, N-6 adenine-specific, conserved site), IPR016691 (tRNA guanosine-2'-O-methyltransferase, TRM11), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003676 (nucleic acid binding), GO:0008168 (methyltransferase activity), GO:0032259 (methylation)
Niben101Scf00302g03024.1	AT5G01700.2	*-*-	Protein phosphatase 2C family protein LENGTH=382	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf05281g00006.1	sp|B1INF6|GATB_CLOBK	***-	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	IPR017959 (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E)	GO:0016874 (ligase activity), GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf05111g04007.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf17398g00005.1	sp|O24160|TGA21_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04977g03006.1	sp|Q8RY79|TYDC1_ARATH	***-	Tyrosine decarboxylase 1	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf05969g01012.1	sp|Q5SPX3|RN215_MOUSE	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04234g01009.1	sp|Q8R146|APEH_MOUSE	***-	Acylamino-acid-releasing enzyme	IPR011659 (WD40-like Beta Propeller), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf00246g01001.1	sp|Q8L9P8|RLF33_ARATH	***-	Protein RALF-like 33	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf07182g02004.1	sp|Q5RAZ5|NSE1_PONAB	-**-	Non-structural maintenance of chromosomes element 1 homolog	IPR011513 (Non-structural maintenance of chromosomes element 1)	GO:0006281 (DNA repair), GO:0030915 (Smc5-Smc6 complex)
Niben101Scf00483g03004.1	sp|Q65SZ8|GLND_MANSM	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf00573g00014.1	sp|D4B2G3|MAP2_ARTBC	****	Methionine aminopeptidase 2	IPR001714 (Peptidase M24, methionine aminopeptidase), IPR004545 (Proliferation-associated protein 1), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0004177 (aminopeptidase activity), GO:0006508 (proteolysis), GO:0008235 (metalloexopeptidase activity)
Niben101Scf03657g04009.1			Unknown protein		
Niben101Ctg14751g00003.1	sp|C0QWX5|RL7_BRAHW	--*-	50S ribosomal protein L7/L12	IPR000206 (Ribosomal protein L7/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04231g01030.1	sp|A1L2R7|T120A_XENLA	***-	Transmembrane protein 120A	IPR012926 (TMPIT-like)	GO:0016021 (integral component of membrane)
Niben101Scf01701g07007.1	sp|P25792|CYSP_SCHMA	*-**	Cathepsin B-like cysteine proteinase	IPR000118 (Granulin), IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf03419g13003.1	gb|KEH40004.1|	****	basic leucine zipper transcription factor [Medicago truncatula]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02045g05022.1	sp|Q9T0D6|PP306_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf15187g03007.1	sp|P18212|PSBP2_TOBAC	****	Oxygen-evolving enhancer protein 2-2, chloroplastic	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf07842g00003.1			Unknown protein		
Niben101Scf04384g04007.1	gb|AFW59909.1|	***-	fiber protein Fb34 [Zea mays]	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf04422g10005.1	sp|Q93YX4|APRL5_ARATH	***-	5'-adenylylsulfate reductase-like 5	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf08601g00005.1			Unknown protein		
Niben101Scf20492g00004.1	AT3G04590.2	****	AT hook motif DNA-binding family protein LENGTH=411	IPR005175 (Domain of unknown function DUF296), IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Scf01230g01013.1	AT1G70480.2	***-	Domain of unknown function (DUF220) LENGTH=338	IPR003863 (Protein of unknown function DUF220)	
Niben101Scf05581g00014.1	sp|Q6UVM3|KCNT2_HUMAN	*-**	Potassium channel subfamily T member 2	IPR003280 (Two pore domain potassium channel), IPR011992 (EF-hand domain pair)	GO:0005267 (potassium channel activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf01557g02001.1			Unknown protein		
Niben101Scf08006g01044.1	sp|P55871|IF2B_MALDO	****	Eukaryotic translation initiation factor 2 subunit beta	IPR002735 (Translation initiation factor IF2/IF5)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf08472g02008.1	sp|Q09868|CIP2_SCHPO	--*-	RNA-binding post-transcriptional regulator cip2		
Niben101Scf00420g05003.1	ref|XP_002522008.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF40412.1| conserved hypothetical protein [Ricinus communis]		
Niben101Ctg16320g00002.1	sp|P56820|EIF3D_ARATH	****	Eukaryotic translation initiation factor 3 subunit D	IPR007783 (Eukaryotic translation initiation factor 3 subunit D)	GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf02470g00003.1	sp|Q4QQS1|T184A_RAT	*-*-	Transmembrane protein 184A	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184)	
Niben101Scf05056g03032.1	sp|Q39649|2SS_CUCMA	--*-	2S albumin	IPR000617 (Napin/ Bra allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0045735 (nutrient reservoir activity)
Niben101Scf08702g00008.1	sp|Q588Z1|PVADH_SPHS1	*-*-	Polyvinylalcohol dehydrogenase	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily)	
Niben101Scf01185g02001.1	emb|CDY33069.1|	--*-	BnaC06g07100D [Brassica napus]		
Niben101Scf01671g03003.1	sp|Q9S7P5|SPL12_ARATH	*-**	Squamosa promoter-binding-like protein 12	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf03115g02008.1	sp|P40918|HSP70_DAVTA	***-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf02074g04031.1			Unknown protein		
Niben101Scf01072g01009.1	sp|Q99MP8|BRAP_MOUSE	***-	BRCA1-associated protein	IPR001607 (Zinc finger, UBP-type), IPR011422 (BRCA1-associated 2), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf05849g01005.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00187g02023.1	sp|O80977|VSR3_ARATH	***-	Vacuolar-sorting receptor 3	IPR001881 (EGF-like calcium-binding domain), IPR003137 (Protease-associated domain, PA), IPR026823 (Complement Clr-like EGF domain)	GO:0005509 (calcium ion binding)
Niben101Scf00596g02010.1	sp|Q8VZQ5|NAT8_ARATH	*-**	Nucleobase-ascorbate transporter 8	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02077g08014.1	sp|P0ACD6|ISCU_ECO57	*-**	Iron-sulfur cluster assembly scaffold protein IscU	IPR002871 (NIF system FeS cluster assembly, NifU, N-terminal)	GO:0005506 (iron ion binding), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf02831g05015.1	sp|P28811|MMSB_PSEAE	****	3-hydroxyisobutyrate dehydrogenase	IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0006573 (valine metabolic process), GO:0008442 (3-hydroxyisobutyrate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04079g02002.1	AT2G39130.1	***-	Transmembrane amino acid transporter family protein LENGTH=550	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf05552g06008.1	sp|Q9XJ60|MAD50_ORYSJ	****	MADS-box transcription factor 50	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00123g06028.1	sp|A1TYH3|ERPA_MARHV	****	Iron-sulfur cluster insertion protein ErpA	IPR000361 (FeS cluster biogenesis), IPR016092 (FeS cluster insertion protein)	GO:0005198 (structural molecule activity), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf01326g09009.1	sp|Q5M786|WDR5_XENTR	*-*-	WD repeat-containing protein 5	IPR001810 (F-box domain), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03170g01006.1	sp|Q6IV56|RN141_DANRE	--*-	RING finger protein 141	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00859g01015.1	ref|NP_001189656.1|	*-*-	polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain [Arabidopsis thaliana] gb|AEC08683.1| polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain [Arabidopsis thaliana]		
Niben101Scf04375g02003.1	gb|AIU49564.1|	***-	iron-sulfur cluster biosynthesis family protein, partial [Theobroma cacao]		
Niben101Scf00317g02011.1	AT4G16650.1	***-	O-fucosyltransferase family protein LENGTH=549	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf00051g04005.1	sp|A0SWL0|FRL2A_ARATH	*-*-	FRIGIDA-like protein 2	IPR012474 (Frigida-like)	
Niben101Scf00046g06001.1	sp|Q0WPX7|BAG2_ARATH	*-*-	BAG family molecular chaperone regulator 2	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf03939g03014.1	sp|Q1E036|RT25_COCIM	--*-	37S ribosomal protein S25, mitochondrial		
Niben101Scf07743g00005.1	sp|Q9JI10|STK3_MOUSE	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02253g06002.1	sp|P40973|PLY_LILLO	****	Pectate lyase	IPR007524 (Pectate lyase, N-terminal), IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	GO:0030570 (pectate lyase activity)
Niben101Scf02891g01009.1	sp|Q9SIQ7|CDPKO_ARATH	*-**	Calcium-dependent protein kinase 24	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01090g02001.1	sp|Q8LDC8|ERF92_ARATH	****	Ethylene-responsive transcription factor 1B	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06772g00001.1	sp|Q9LJB7|BBX32_ARATH	*-**	B-box zinc finger protein 32	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf01517g08034.1	sp|Q5REC9|RAB8B_PONAB	***-	Ras-related protein Rab-8B	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02201g00013.1	sp|Q62991|SCFD1_RAT	*-*-	Sec1 family domain-containing protein 1	IPR001619 (Sec1-like protein)	GO:0006904 (vesicle docking involved in exocytosis), GO:0016192 (vesicle-mediated transport)
Niben101Scf04528g11009.1	sp|Q28BZ1|RBM8A_XENTR	*-**	RNA-binding protein 8A	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00611g08002.1	sp|O04719|P2C77_ARATH	****	Protein phosphatase 2C 77	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf00046g00002.1	AT3G27580.1	****	Protein kinase superfamily protein LENGTH=578	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01111g05017.1	AT1G12800.1	****	Nucleic acid-binding, OB-fold-like protein LENGTH=767	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding)
Niben101Scf00288g14004.1	sp|Q9LV01|ETOL2_ARATH	*-*-	ETO1-like protein 2	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04563g01011.1	sp|Q84YJ9|HAK26_ORYSJ	****	Potassium transporter 26	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf03475g00007.1	sp|Q924S1|PLCD_RAT	*-*-	1-acyl-sn-glycerol-3-phosphate acyltransferase delta		
Niben101Scf00073g06003.1	sp|B0K657|FTSH2_THEPX	*-**	ATP-dependent zinc metalloprotease FtsH 2	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00978g08004.1	sp|Q00766|PHS1_DICDI	****	Glycogen phosphorylase 1	IPR000811 (Glycosyl transferase, family 35)	GO:0004645 (phosphorylase activity), GO:0005975 (carbohydrate metabolic process), GO:0008184 (glycogen phosphorylase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf04219g01001.1	AT3G20240.1	***-	Mitochondrial substrate carrier family protein LENGTH=348	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf02425g00017.1	ref|NP_001148114.1|	*-**	transferase, transferring glycosyl groups precursor [Zea mays] gb|ACG29772.1| transferase, transferring glycosyl groups [Zea mays]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf01384g00008.1	AT2G35800.1	***-	mitochondrial substrate carrier family protein LENGTH=823	IPR002067 (Mitochondrial carrier protein), IPR011992 (EF-hand domain pair), IPR023395 (Mitochondrial carrier domain)	GO:0005509 (calcium ion binding), GO:0055085 (transmembrane transport)
Niben101Scf01978g00009.1			Unknown protein		
Niben101Scf06348g00039.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02011g10002.1	sp|Q6PEW1|ZCH12_HUMAN	--**	Zinc finger CCHC domain-containing protein 12	IPR001878 (Zinc finger, CCHC-type), IPR006564 (Zinc finger, PMZ-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf09603g03008.1	AT5G27030.2	***-	TOPLESS-related 3 LENGTH=1134	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR027728 (Topless family)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08039g04006.1	dbj|BAC10782.1|	***-	HGWP repeat containing protein-like [Oryza sativa Japonica Group]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf02794g06003.1	sp|Q8YMZ8|FTSH_NOSS1	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf03953g04001.1	ref|XP_003589248.1|	***-	Pheromone receptor-like protein [Medicago truncatula] gb|AES59499.1| DUF1645 family protein [Medicago truncatula]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf16338g00009.1	ref|XP_003599472.1|	--*-	Defensin-like protein [Medicago truncatula]	IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf04083g04039.1	sp|P49599|P2C57_ARATH	****	Protein phosphatase 2C 57	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf09262g01020.1			Unknown protein		
Niben101Scf06761g01028.1	ref|XP_010099869.1|	***-	Histone-lysine N-methyltransferase ATX1 [Morus notabilis] gb|EXB80746.1| Histone-lysine N-methyltransferase ATX1 [Morus notabilis]		
Niben101Scf03587g00002.1	AT5G13490.1	***-	ADP/ATP carrier 2 LENGTH=385	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf00138g01001.1	sp|F4IXW2|BIG5_ARATH	*-*-	Brefeldin A-inhibited guanine nucleotide-exchange protein 5		
Niben101Scf03300g02006.1	AT1G68670.1	***-	myb-like transcription factor family protein LENGTH=354	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf11809g00004.1	ref|XP_007047165.1|	*-*-	Plasma membrane, autoregulation binding site, Misato Segment II, myosin-like, Tubulin/FtsZ, N-terminal isoform 3 [Theobroma cacao] gb|EOX91322.1| Plasma membrane, autoregulation binding site, Misato Segment II, myosin-like, Tubulin/FtsZ, N-terminal isoform 3 [Theobroma cacao]		
Niben101Scf12680g05001.1	ref|XP_002526943.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF35430.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02763g03009.1	sp|Q940X7|RBX1A_ARATH	***-	RING-box protein 1a		
Niben101Scf02497g08023.1	AT3G61050.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=510	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf03053g00005.1	sp|C5DT65|CMC4_ZYGRC	-**-	Cx9C motif-containing protein 4, mitochondrial	IPR009069 (Cysteine alpha-hairpin motif superfamily)	
Niben101Scf05643g05001.1	sp|P30364|ASPG_LUPAN	***-	Isoaspartyl peptidase/L-asparaginase	IPR000246 (Peptidase T2, asparaginase 2), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0016787 (hydrolase activity)
Niben101Scf00497g06008.1	sp|Q9ZLA1|KPRS_HELPJ	****	Ribose-phosphate pyrophosphokinase	IPR005946 (Ribose-phosphate diphosphokinase), IPR029057 (Phosphoribosyltransferase-like), IPR029099 (Ribose-phosphate pyrophosphokinase, N-terminal domain)	GO:0000287 (magnesium ion binding), GO:0004749 (ribose phosphate diphosphokinase activity), GO:0009156 (ribonucleoside monophosphate biosynthetic process), GO:0009165 (nucleotide biosynthetic process), GO:0044249 (cellular biosynthetic process)
Niben101Scf07304g02018.1	AT4G33150.1	****	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme LENGTH=1064	IPR005097 (Saccharopine dehydrogenase / Homospermidine synthase), IPR007545 (LOR/SDH bifunctional enzyme, conserved domain), IPR007698 (Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain), IPR007886 (Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04992g03008.1	sp|Q7Y223|MAN2_ARATH	***-	Mannan endo-1,4-beta-mannosidase 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04339g04004.1	sp|Q9Y2G4|ANKR6_HUMAN	--*-	Ankyrin repeat domain-containing protein 6	IPR020683 (Ankyrin repeat-containing domain)	
Niben101Scf02520g00006.1	sp|P53811|PIPNB_MOUSE	***-	Phosphatidylinositol transfer protein beta isoform	IPR001666 (Phosphatidylinositol transfer protein), IPR023393 (START-like domain)	GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf00960g03014.1	sp|Q9LZM3|PPCS2_ARATH	***-	Phosphopantothenate--cysteine ligase 2	IPR007085 (DNA/pantothenate metabolism flavoprotein, C-terminal)	
Niben101Scf00180g05009.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf01374g15010.1	emb|CDY35106.1|	*-*-	BnaA06g11160D [Brassica napus]		
Niben101Scf01834g00007.1	sp|Q84WU2|UBP13_ARATH	*-*-	Ubiquitin carboxyl-terminal hydrolase 13	IPR024729 (ICP0-binding domain of Ubiquitin-specific protease 7)	
Niben101Scf01369g03003.1	AT4G02460.1	*-**	DNA mismatch repair protein, putative LENGTH=923	IPR014790 (MutL, C-terminal, dimerisation), IPR028831 (DNA mismatch repair protein Pms1/Pms2)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0032300 (mismatch repair complex)
Niben101Scf01180g00001.1	AT4G22770.1	***-	AT hook motif DNA-binding family protein LENGTH=334	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf08936g09006.1	sp|Q84Y01|ITPK1_MAIZE	*-**	Inositol-tetrakisphosphate 1-kinase 1	IPR008656 (Inositol-tetrakisphosphate 1-kinase)	GO:0000287 (magnesium ion binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0032957 (inositol trisphosphate metabolic process), GO:0047325 (inositol tetrakisphosphate 1-kinase activity), GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity), GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
Niben101Scf09908g00005.1	AT2G17890.1	****	calcium-dependent protein kinase 16 LENGTH=571	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06172g02019.1	gb|EMT09272.1|	*-*-	Aldose 1-epimerase [Aegilops tauschii]	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf14144g01017.1	sp|Q7SY29|SPX2_DANRE	***-	Sugar phosphate exchanger 2	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf17372g00014.1	sp|Q2M2R8|PEX5_RAT	***-	Peroxisomal targeting signal 1 receptor	IPR011990 (Tetratricopeptide-like helical domain), IPR024111 (Peroxisomal targeting signal 1 receptor family)	GO:0005515 (protein binding)
Niben101Scf01888g01004.1	AT1G72420.1	***-	NADH:ubiquinone oxidoreductase intermediate-associated protein 30 LENGTH=228	IPR008979 (Galactose-binding domain-like), IPR013857 (NADH:ubiquinone oxidoreductase intermediate-associated protein 30)	
Niben101Scf28085g00001.1	AT5G23390.1	*-*-	Plant protein of unknown function (DUF639) LENGTH=730	IPR006927 (Protein of unknown function DUF639)	
Niben101Scf10974g01005.1	sp|B2JS89|BETA_BURP8	****	Oxygen-dependent choline dehydrogenase	IPR012132 (Glucose-methanol-choline oxidoreductase)	GO:0006066 (alcohol metabolic process), GO:0008812 (choline dehydrogenase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01634g07031.1	sp|Q9HDW7|ATC2_SCHPO	****	Calcium-transporting ATPase 2	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain), IPR024750 (Calcium-transporting P-type ATPase, N-terminal autoinhibitory domain)	GO:0000166 (nucleotide binding), GO:0005388 (calcium-transporting ATPase activity), GO:0005516 (calmodulin binding), GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding), GO:0070588 (calcium ion transmembrane transport)
Niben101Scf02476g00004.1	ref|XP_002523292.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF39093.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09470g01004.1	sp|Q9ZRT5|GSTT1_ARATH	***-	Glutathione S-transferase T1	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf03908g00013.1	sp|Q3UX61|NAA11_MOUSE	*-**	N-alpha-acetyltransferase 11	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf00219g03003.1	AT5G42680.1	***-	Protein of unknown function, DUF617 LENGTH=238	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf34007g00003.1	sp|Q8GZ79|TI201_ARATH	***-	Protein TIC 20-I, chloroplastic	IPR005691 (Chloroplast protein import component Tic20)	
Niben101Scf04316g05001.1	sp|Q5UPJ7|SYY_MIMIV	--**	Tyrosine--tRNA ligase	IPR002305 (Aminoacyl-tRNA synthetase, class Ic)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation)
Niben101Scf22427g00002.1	sp|P35283|RAB12_MOUSE	--*-	Ras-related protein Rab-12	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf02805g02022.1	sp|Q9XI60|LPP2_ARATH	*-*-	Lipid phosphate phosphatase 2	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase), IPR028681 (Lipid phosphate phosphatase, plant)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Scf07155g00005.1	sp|O33836|GAL7_THEMA	****	Galactose-1-phosphate uridylyltransferase	IPR001937 (Galactose-1-phosphate uridyl transferase, class I), IPR011146 (HIT-like domain)	GO:0003824 (catalytic activity), GO:0006012 (galactose metabolic process), GO:0008108 (UDP-glucose:hexose-1-phosphate uridylyltransferase activity), GO:0008270 (zinc ion binding)
Niben101Scf00298g03006.1	sp|Q6NTV8|MED20_XENLA	--**	Mediator of RNA polymerase II transcription subunit 20	IPR013921 (Mediator complex, subunit Med20)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf00505g00005.1	ref|WP_008210832.1|	--*-	epimerase [Rhodanobacter sp. 115] gb|EIL96627.1| NAD dependent epimerase/dehydratase family protein 4 [Rhodanobacter sp. 115]		
Niben101Scf04007g05005.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00653g01009.1	AT5G16400.1	*-*-	thioredoxin F2 LENGTH=185	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf08621g04007.1	AT5G16620.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=447	IPR006636 (Heat shock chaperonin-binding)	
Niben101Scf01146g05002.1	sp|Q9M373|AGP20_ARATH	--*-	Arabinogalactan peptide 20		
Niben101Scf06430g00001.1	sp|Q6P1J9|CDC73_HUMAN	*-*-	Parafibromin	IPR007852 (RNA polymerase II accessory factor, Cdc73)	
Niben101Scf14669g00011.1	sp|P38055|YDJE_ECOLI	-***	Inner membrane metabolite transport protein YdjE	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf09338g04002.1	sp|Q6ENJ0|PSBC_ORYNI	*-**	Photosystem II CP43 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf10627g00012.1	sp|Q9SMY8|FBL15_ARATH	***-	F-box/LRR-repeat protein 15	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf00215g00024.1	sp|A6WX07|DNAJ_OCHA4	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf08033g01004.1	sp|B2GGD9|OBG_KOCRD	****	GTPase Obg	IPR014100 (GTP-binding protein Obg/CgtA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000287 (magnesium ion binding), GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf04398g06007.1			Unknown protein		
Niben101Scf01141g06003.1			Unknown protein		
Niben101Scf05490g00001.1	sp|Q5ZUH9|MSBA_LEGPH	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf09696g00021.1	ref|XP_002531456.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF30926.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06600g00001.1	sp|B9LTS6|PSB_HALLT	****	Proteasome subunit beta	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf00282g03018.1	sp|Q0WUQ1|BAG1_ARATH	****	BAG family molecular chaperone regulator 1	IPR003103 (BAG domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf07741g01003.1	sp|P93194|RPK1_IPONI	****	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09654g00005.1	sp|P23712|GLNA_LACSA	*-*-	Glutamine synthetase	IPR014746 (Glutamine synthetase/guanido kinase, catalytic domain)	GO:0003824 (catalytic activity), GO:0004356 (glutamate-ammonia ligase activity), GO:0006807 (nitrogen compound metabolic process)
Niben101Scf03057g00018.1	sp|Q8TEQ8|PIGO_HUMAN	*-*-	GPI ethanolamine phosphate transferase 3		
Niben101Scf08570g04008.1	sp|P0CO03|H2B_CRYNB	*-*-	Histone H2B	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf08483g00017.1	sp|Q9LG26|PARN_ARATH	***-	Poly(A)-specific ribonuclease PARN	IPR006941 (Ribonuclease CAF1), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Scf06164g01032.1	sp|Q07XN2|UBIA_SHEFN	***-	4-hydroxybenzoate octaprenyltransferase	IPR000537 (UbiA prenyltransferase family)	GO:0004659 (prenyltransferase activity), GO:0016021 (integral component of membrane)
Niben101Scf04306g02005.1	AT3G13070.1	***-	CBS domain-containing protein / transporter associated domain-containing protein LENGTH=661	IPR000644 (CBS domain), IPR002550 (Domain of unknown function DUF21), IPR005170 (Transporter-associated domain), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06376g04005.1	sp|Q2H334|NM111_CHAGB	****	Pro-apoptotic serine protease NMA111	IPR001940 (Peptidase S1C), IPR009003 (Trypsin-like cysteine/serine peptidase domain), IPR025926 (PDZ-like domain)	GO:0003824 (catalytic activity), GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf02054g02011.1	AT2G33320.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=602	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf16511g00012.1	sp|Q8JZX4|SPF45_MOUSE	*-*-	Splicing factor 45	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06725g02018.1	sp|O48520|DPOD2_ARATH	*-*-	DNA polymerase delta small subunit	IPR024826 (DNA polymerase delta/II small subunit family)	
Niben101Scf06223g00003.1	AT2G38070.1	***-	Protein of unknown function (DUF740) LENGTH=619	IPR008004 (Uncharacterised protein family UPF0503)	
Niben101Scf02756g01008.1	sp|Q6EUK7|PUB04_ORYSJ	*-*-	U-box domain-containing protein 4	IPR011990 (Tetratricopeptide-like helical domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf01853g01001.1	sp|Q9FT52|ATP5H_ARATH	****	ATP synthase subunit d, mitochondrial	IPR008689 (ATPase, F0 complex, subunit D, mitochondrial)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf03479g01009.1	emb|CDY00812.1|	*-*-	BnaCnng00120D [Brassica napus]		
Niben101Scf04331g07008.1	AT3G22790.1	***-	Kinase interacting (KIP1-like) family protein LENGTH=1728	IPR011684 (KIP1-like)	
Niben101Scf02797g01005.1	sp|Q9ULK6|RN150_HUMAN	--*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02969g00003.1	sp|Q9I8F9|HSP71_ORYLA	***-	Heat shock 70 kDa protein 1	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf02073g05005.1	sp|Q31RR1|TATA_SYNE7	--*-	Sec-independent protein translocase protein TatA	IPR003369 (Sec-independent protein translocase protein TatA/B/E)	GO:0008565 (protein transporter activity), GO:0015031 (protein transport)
Niben101Scf01313g06021.1	gb|KEH40433.1|	--*-	F-box/RNI/FBD-like domain protein, putative [Medicago truncatula]		
Niben101Scf03852g00008.1			Unknown protein		
Niben101Scf03021g03021.1	gb|AGV75925.1|	--*-	CFE protein [Gossypium barbadense]		
Niben101Scf06180g00008.1	ref|NP_001149181.1|	*-**	LOC100282803 [Zea mays] gb|ACG34471.1| nucleic acid binding protein [Zea mays]	IPR000467 (G-patch domain)	GO:0003676 (nucleic acid binding)
Niben101Scf00705g06001.1	sp|Q9SE83|DRP2A_ARATH	*-*-	Dynamin-2A	IPR022812 (Dynamin superfamily)	
Niben101Scf00170g05007.1	AT2G44830.1	*-**	Protein kinase superfamily protein LENGTH=765	IPR000014 (PAS domain), IPR000700 (PAS-associated, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004871 (signal transducer activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00022g04003.1	sp|Q9FUJ1|CKX7_ARATH	****	Cytokinin dehydrogenase 7	IPR016164 (FAD-linked oxidase-like, C-terminal), IPR016166 (FAD-binding, type 2), IPR016170 (Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0009690 (cytokinin metabolic process), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0019139 (cytokinin dehydrogenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02195g02007.1	sp|Q40459|PSBO_TOBAC	****	Oxygen-evolving enhancer protein 1, chloroplastic	IPR002628 (Photosystem II PsbO, manganese-stabilising), IPR011250 (Outer membrane protein/outer membrane enzyme PagP , beta-barrel)	GO:0005509 (calcium ion binding), GO:0009279 (cell outer membrane), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019898 (extrinsic component of membrane), GO:0042549 (photosystem II stabilization)
Niben101Scf05307g00006.1	sp|Q84KJ6|AMT31_ORYSJ	****	Ammonium transporter 3 member 1	IPR001905 (Ammonium transporter), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf00024g04001.1	gb|AFI44275.1|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Silene vulgaris]		
Niben101Scf04941g02006.1	AT5G43750.1	***-	NAD(P)H dehydrogenase 18 LENGTH=212		
Niben101Scf06846g04002.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00837g00017.1	sp|P0A4V9|FTSH_MYCBO	****	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR005936 (Peptidase, FtsH), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf07991g03005.1	sp|P97573|SHIP1_RAT	--*-	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf10189g01001.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf06825g04015.1	sp|O04300|UPTG_PEA	***-	Alpha-1,4-glucan-protein synthase [UDP-forming]	IPR004901 (Reversibly glycosylated polypeptide family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016866 (intramolecular transferase activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf00456g00008.1	sp|D3TQJ5|FEN1_GLOMM	***-	Flap endonuclease 1	IPR006085 (XPG N-terminal), IPR006086 (XPG-I domain), IPR020045 (5'-3' exonuclease, C-terminal domain), IPR029060 (PIN domain-like)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0004518 (nuclease activity), GO:0006281 (DNA repair), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf07788g04025.1	AT1G12990.1	****	beta-1,4-N-acetylglucosaminyltransferase family protein LENGTH=392	IPR006813 (Glycosyl transferase, family 17)	GO:0003830 (beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity), GO:0006487 (protein N-linked glycosylation), GO:0016020 (membrane)
Niben101Scf00854g03006.1	sp|A4QJB5|PSAA_AETCO	--**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf02340g05013.1	emb|CDY03785.1|	*-*-	BnaC01g29020D [Brassica napus]		
Niben101Scf02688g04003.1	sp|Q9Z1S0|BUB1B_MOUSE	--*-	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta		
Niben101Scf02632g00005.1	sp|A1JIK3|ACSA_YERE8	***-	Acetyl-coenzyme A synthetase	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00941g06004.1	AT5G66600.4	*-*-	Protein of unknown function, DUF547 LENGTH=629	IPR006869 (Domain of unknown function DUF547)	
Niben101Scf01438g05003.1	sp|Q7NLT8|MUTS_GLOVI	*-**	DNA mismatch repair protein MutS	IPR000432 (DNA mismatch repair protein MutS, C-terminal), IPR007695 (DNA mismatch repair protein MutS-like, N-terminal), IPR007696 (DNA mismatch repair protein MutS, core), IPR007860 (DNA mismatch repair protein MutS, connector domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf06436g00006.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13874g00001.1	ref|XP_002517792.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF44599.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03154g04007.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00573g04002.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf04681g00007.1	sp|Q9LZ76|PHYK1_ARATH	***-	Phytol kinase 1, chloroplastic	IPR000374 (Phosphatidate cytidylyltransferase)	GO:0016020 (membrane), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08041g03005.1			Unknown protein		
Niben101Scf01062g03018.1	sp|Q9M099|SCP24_ARATH	*-**	Serine carboxypeptidase 24	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf10150g06006.1	AT2G35605.1	***-	SWIB/MDM2 domain superfamily protein LENGTH=109	IPR003121 (SWIB/MDM2 domain)	GO:0005515 (protein binding)
Niben101Scf10968g03007.1	sp|Q9LHJ8|SAP5_ARATH	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	IPR000058 (Zinc finger, AN1-type)	GO:0008270 (zinc ion binding)
Niben101Scf03634g02004.1	AT1G58030.1	*-*-	cationic amino acid transporter 2 LENGTH=635		
Niben101Scf01848g04010.1	AT1G14560.1	***-	Mitochondrial substrate carrier family protein LENGTH=331	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf08678g01004.1	sp|Q9SRT0|PUB9_ARATH	***-	U-box domain-containing protein 9	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf01594g02012.1	sp|Q52QH4|NAC68_ORYSJ	***-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02460g06006.1			Unknown protein		
Niben101Scf03595g09009.1	sp|Q114R3|DNAJ_TRIEI	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf00497g08003.1	sp|O64705|PP184_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01609g00009.1	sp|Q99575|POP1_HUMAN	*-*-	Ribonucleases P/MRP protein subunit POP1	IPR009723 (Ribonuclease P/MRP, subunit POP1), IPR012590 (POPLD)	GO:0001682 (tRNA 5'-leader removal), GO:0004526 (ribonuclease P activity), GO:0006396 (RNA processing)
Niben101Scf00239g10003.1	sp|Q7G6K7|FH3_ORYSJ	*-*-	Formin-like protein 3	IPR015425 (Formin, FH2 domain)	
Niben101Scf02873g01013.1	AT2G31010.1	*-*-	Protein kinase superfamily protein LENGTH=775		
Niben101Scf04323g04025.1	sp|Q6YZA9|GL82_ORYSJ	***-	Germin-like protein 8-2	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf01063g08022.1	sp|O34098|SPOT_SPICI	*-**	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	IPR003607 (HD/PDEase domain), IPR007685 (RelA/SpoT), IPR012675 (Beta-grasp domain)	GO:0015969 (guanosine tetraphosphate metabolic process)
Niben101Scf07058g00002.1			Unknown protein		
Niben101Scf37405g00002.1			Unknown protein		
Niben101Scf06578g02004.1	sp|Q69S43|CCD61_ORYSJ	***-	Cyclin-D6-1	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf12885g02012.1	sp|Q6ID77|MED11_ARATH	****	Mediator of RNA polymerase II transcription subunit 11	IPR019404 (Mediator complex, subunit Med11)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf00296g02008.1	sp|P71377|FTSH_HAEIN	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf13558g01008.1	AT5G20940.1	*-**	Glycosyl hydrolase family protein LENGTH=626	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05621g13007.1	sp|P10708|CB12_SOLLC	***-	Chlorophyll a-b binding protein 7, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf01661g01018.1	sp|Q8S8A0|GDU4_ARATH	***-	Protein GLUTAMINE DUMPER 4		
Niben101Scf18057g00010.1	sp|Q3KQF4|LRC69_XENLA	--*-	Leucine-rich repeat-containing protein 69	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Ctg08408g00001.1	sp|Q9FGY4|FB341_ARATH	***-	F-box protein	IPR017451 (F-box associated interaction domain)	
Niben101Scf05690g01004.1	sp|A8H759|DNAJ_SHEPA	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR026894 (DNAJ-containing protein, X-domain)	
Niben101Scf05124g00003.1	sp|Q9FFN0|GDL72_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf10732g01029.1			Unknown protein		
Niben101Scf06156g02011.1	sp|Q9FJL8|RP5L1_ARATH	*-**	DNA-directed RNA polymerase subunit 5-like protein 1	IPR000783 (RNA polymerase, subunit H/Rpb5 C-terminal), IPR020609 (Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf09235g00012.1	sp|Q0G9W2|PSAA_DAUCA	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00761g04025.1			Unknown protein		
Niben101Scf00123g01003.1	sp|P19595|UGPA_SOLTU	*-**	UTP--glucose-1-phosphate uridylyltransferase	IPR002618 (UTP--glucose-1-phosphate uridylyltransferase family)	GO:0008152 (metabolic process), GO:0070569 (uridylyltransferase activity)
Niben101Scf00786g00015.1	AT3G27000.1	****	actin related protein 2 LENGTH=389	IPR004000 (Actin family)	GO:0005524 (ATP binding), GO:0005856 (cytoskeleton), GO:0005885 (Arp2/3 protein complex), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf00603g03025.1	ref|NP_004308.2|	****	ATPase ASNA1 [Homo sapiens] ref|NP_001092334.1| ATPase ASNA1 [B product [Homo sapiens] tpg|DAA28025.1| TPA: arsA arsenite transporter, ATP-binding, homolog 1 [Bos taurus] gb|ADZ15365.1| arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) [synthetic construct] gb|EHH29684.1| ATPase ASNA1 [Macaca mulatta] gb|EHH59253.1| ATPase ASNA1 [Macaca fascicularis] gb|ELK06712.1| ATPase ASNA1 [Pteropus alecto] gb|ELR52911.1| ATPase ASNA1 [Bos mutus] gb|AHJ25817.1| arsa arsenite transporter ATP-binding [Panthera tigris altaica] gb|AIC48309.1| ASNA1, partial [synthetic construct]	IPR016300 (Arsenical pump ATPase, ArsA/GET3), IPR025723 (Anion-transporting ATPase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf07582g00003.1	AT2G23070.1	****	Protein kinase superfamily protein LENGTH=432	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06186g03011.1	AT5G23950.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=219	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf05638g00003.1	sp|Q949M2|FABG4_BRANA	*-*-	3-oxoacyl-[acyl-carrier-protein] reductase 4	IPR016040 (NAD(P)-binding domain)	
Niben101Scf02513g05008.1	AT4G13070.1	****	RNA-binding CRS1 / YhbY (CRM) domain protein LENGTH=343	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf16754g00001.1	sp|Q11180|WHT1_CAEEL	****	ABC transporter ATP-binding protein/permease wht-1	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf16236g00007.1	sp|Q43873|PER73_ARATH	****	Peroxidase 73	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06590g00003.1	AT1G07890.3	****	ascorbate peroxidase 1 LENGTH=250	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08870g00008.1	sp|P93311|RM02_ARATH	*-*-	60S ribosomal protein L2, mitochondrial	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf06973g00003.1	AT5G15240.1	***-	Transmembrane amino acid transporter family protein LENGTH=423	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf01719g04010.1	sp|Q86WV5|TEN1L_HUMAN	-***	CST complex subunit TEN1	IPR029146 (CST complex subunit Ten1, animal and plant type)	GO:0003697 (single-stranded DNA binding), GO:0070188 (Stn1-Ten1 complex)
Niben101Scf04993g03007.1			Unknown protein		
Niben101Scf04098g00003.1	sp|Q9LDH1|SIB1_ARATH	*-*-	Sigma factor binding protein 1, chloroplastic	IPR008889 (VQ)	
Niben101Scf04910g01004.1	sp|P49039|SUS2_SOLTU	****	Sucrose synthase	IPR012820 (Sucrose synthase, plant/cyanobacteria)	GO:0005985 (sucrose metabolic process), GO:0009058 (biosynthetic process), GO:0016157 (sucrose synthase activity)
Niben101Scf02009g01002.1	emb|CDY07461.1|	***-	BnaA07g25400D [Brassica napus]		
Niben101Scf06171g02036.1	sp|A7FYA5|DAPH_CLOB1	*-*-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	IPR011004 (Trimeric LpxA-like)	
Niben101Ctg16196g00001.1	sp|Q94AI4|METL1_ARATH	***-	Methyltransferase-like protein 1		
Niben101Scf00687g02004.1	gb|KEH32764.1|	*-*-	ATP-dependent RNA helicase [Medicago truncatula]		
Niben101Scf03737g04004.1			Unknown protein		
Niben101Scf01101g04011.1	sp|Q5YDB5|CPL2_ARATH	***-	RNA polymerase II C-terminal domain phosphatase-like 2	IPR004274 (NLI interacting factor), IPR014720 (Double-stranded RNA-binding domain), IPR023214 (HAD-like domain)	GO:0005515 (protein binding)
Niben101Scf00016g04005.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf02983g02002.1	tpg|DAA57837.1|	*-**	TPA: metal ion binding protein [Zea mays]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf00127g00001.1	sp|Q0H8D7|NBS1_ARATH	***-	Nijmegen breakage syndrome 1 protein	IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf02063g01002.1	sp|Q9LSW2|ARP9_ARATH	*-*-	Actin-related protein 9	IPR004000 (Actin family)	GO:0006338 (chromatin remodeling), GO:0031011 (Ino80 complex)
Niben101Scf00586g02010.1	ref|NP_181316.1|	*-*-	cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana] gb|AEC09452.1| cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana]		
Niben101Scf01574g04012.1	ref|XP_007020371.1|	*-*-	Transducin/WD40 repeat-like superfamily protein, putative isoform 3 [Theobroma cacao] gb|EOY11896.1| Transducin/WD40 repeat-like superfamily protein, putative isoform 3 [Theobroma cacao]	IPR012419 (Cas1p 10 TM acyl transferase domain)	
Niben101Scf00481g01003.1	AT5G19400.1	*-*-	Telomerase activating protein Est1 LENGTH=1059	IPR018834 (DNA/RNA-binding domain, Est1-type), IPR019458 (Telomerase activating protein Est1)	
Niben101Scf03040g04001.1	ref|XP_003637786.1|	*-*-	GPI-anchored protein, putative [Medicago truncatula] gb|KEH16704.1| transmembrane protein, putative [Medicago truncatula]		
Niben101Scf27139g00025.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf06715g00011.1	sp|Q13188|STK3_HUMAN	--*-	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01328g02011.1	AT1G06510.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 376 Blast hits to 369 proteins in 152 species: Archae - 5; Bacteria - 113; Metazoa - 105; Fungi - 46; Plants - 27; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink). LENGTH=277		
Niben101Scf03836g00004.1	sp|Q1DCV8|BIOF_MYXXD	***-	8-amino-7-oxononanoate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf04854g01004.1	AT5G54290.2	*-*-	cytochrome c biogenesis protein family LENGTH=355		
Niben101Scf01406g02003.1	AT3G55230.1	***-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=306	IPR004265 (Plant disease resistance response protein)	
Niben101Scf05494g01010.1	emb|CDY46251.1|	***-	BnaC03g66120D [Brassica napus]		
Niben101Scf02819g01001.1	sp|Q9LVZ8|LOR12_ARATH	***-	Protein LURP-one-related 12	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf00135g03035.1			Unknown protein		
Niben101Scf11108g02005.1	AT5G11850.1	*-**	Protein kinase superfamily protein LENGTH=880	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00595g04006.1	ref|XP_007038720.1|	***-	Chloroplast thylakoid membrane, putative isoform 1 [Theobroma cacao] gb|EOY23221.1| Chloroplast thylakoid membrane, putative isoform 1 [Theobroma cacao]		
Niben101Scf03368g01011.1			Unknown protein		
Niben101Scf02824g03017.1	AT2G04030.1	***-	Chaperone protein htpG family protein LENGTH=780	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf01623g06001.1	AT4G16100.1	*-*-	Protein of unknown function (DUF789) LENGTH=394	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf13644g00002.1	gb|ABR25403.1|	****	transferase (transferring glycosyl group) [Oryza sativa Indica Group]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf02572g00016.1	sp|Q9M817|PTR6_ARATH	*-*-	Protein NRT1/ PTR FAMILY 1.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00578g00010.1	sp|Q3IMY5|RL2_NATPD	****	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf03823g00007.1	sp|Q9ZUT5|PP191_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05413g07001.1			Unknown protein		
Niben101Scf03403g02006.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf16532g02011.1			Unknown protein		
Niben101Ctg15977g00001.1	AT1G04560.1	***-	AWPM-19-like family protein LENGTH=186	IPR008390 (AWPM-19-like)	
Niben101Scf06077g05010.1	ref|XP_002528523.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF33835.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03121g04002.1			Unknown protein		
Niben101Scf00742g01001.1			Unknown protein		
Niben101Scf07187g01002.1	AT5G14760.1	***-	L-aspartate oxidase LENGTH=651	IPR003953 (FAD binding domain), IPR015939 (Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal), IPR027477 (Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03048g01021.1	gb|AAP54023.1|	*-*-	expressed protein [Oryza sativa Japonica Group]	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf17572g00010.1	sp|A7HBU9|LIPA_ANADF	****	Lipoyl synthase	IPR003698 (Lipoyl synthase), IPR007197 (Radical SAM)	GO:0003824 (catalytic activity), GO:0009107 (lipoate biosynthetic process), GO:0009507 (chloroplast), GO:0016992 (lipoate synthase activity), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf03889g01010.1	sp|O75494|SRS10_HUMAN	--*-	Serine/arginine-rich splicing factor 10	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf06162g01002.1	ref|XP_007287240.1|	--*-	transcription initiation factor tfiid subunit 7 [Colletotrichum gloeosporioides Nara gc5] gb|ELA23686.1| transcription initiation factor tfiid subunit 7 [Colletotrichum gloeosporioides Nara gc5]		
Niben101Scf13916g00001.1	sp|O48882|ACCO2_MALDO	***-	1-aminocyclopropane-1-carboxylate oxidase 2	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Ctg08975g00001.1	ref|XP_003625219.1|	--*-	Transcription factor, putative [Medicago truncatula]		
Niben101Scf05688g02007.1	AT1G65790.1	*-**	receptor kinase 1 LENGTH=843	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021820 (S-locus receptor kinase, C-terminal)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11999g00010.1	sp|Q9SN23|LBD38_ARATH	*-*-	LOB domain-containing protein 38	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf05295g05005.1	sp|P24759|ATI_VACCW	--*-	A-type inclusion protein A25	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf01326g04007.1	AT5G39785.2	*-*-	Protein of unknown function (DUF1666) LENGTH=607	IPR008195 (Ribosomal protein L34Ae), IPR012870 (Protein of unknown function DUF1666)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01574g04014.1	sp|Q21017|KIN29_CAEEL	*-**	Serine/threonine-protein kinase kin-29	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07512g00016.1	AT5G63860.1	*-*-	Regulator of chromosome condensation (RCC1) family protein LENGTH=440	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf00902g04001.1	ref|WP_016786451.1|	--*-	Nex18 symbiotically induced protein [Vibrio cyclitrophicus]	IPR000782 (FAS1 domain)	
Niben101Scf01511g01008.1	emb|CDX68715.1|	***-	BnaC01g07380D [Brassica napus]	IPR010471 (Protein of unknown function DUF1068)	
Niben101Scf01734g01046.1	gb|AFH58131.1|	--*-	Ycf6, partial (chloroplast) [Dombeya acutangula]		
Niben101Scf00703g00003.1	AT4G21750.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=762	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf01070g03002.1	sp|Q6BKW8|H2A1_DEBHA	*-*-	Histone H2A.1	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf06687g00001.1	sp|Q96IR2|ZN845_HUMAN	--*-	Zinc finger protein 845	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR019786 (Zinc finger, PHD-type, conserved site)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf08755g01008.1	sp|Q8TFK8|DED1_CANGA	*-*-	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01237g00011.1	gb|KEH26717.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf03038g16008.1			Unknown protein		
Niben101Scf07069g01002.1	sp|O65418|APC4_ARATH	****	Anaphase-promoting complex subunit 4	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR024789 (Anaphase-promoting complex subunit 4), IPR024790 (Anaphase-promoting complex subunit 4 long domain), IPR024977 (Anaphase-promoting complex subunit 4, WD40 domain)	GO:0005515 (protein binding), GO:0005680 (anaphase-promoting complex), GO:0030071 (regulation of mitotic metaphase/anaphase transition), GO:0031145 (anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process)
Niben101Scf02913g00010.1	sp|Q94C60|SPT42_ARATH	***-	Transcription elongation factor SPT4 homolog 2	IPR016046 (Transcription initiation Spt4-like), IPR029040 (RNA polymerase subunit RPABC4/transcription elongation factor Spt4)	
Niben101Scf10169g03009.1	sp|Q54ND5|MINP1_DICDI	****	Multiple inositol polyphosphate phosphatase 1	IPR029033 (Histidine phosphatase superfamily)	GO:0003993 (acid phosphatase activity), GO:0016791 (phosphatase activity)
Niben101Scf04796g00015.1	ref|XP_007035345.1|	--*-	F-box family protein [Theobroma cacao] gb|EOY06271.1| F-box family protein [Theobroma cacao]	IPR017451 (F-box associated interaction domain)	
Niben101Scf02996g04002.1	sp|Q148K0|TCEA2_BOVIN	*-**	Transcription elongation factor A protein 2	IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf02869g11003.1	sp|Q66HG1|DMTF1_RAT	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08872g00010.1	AT3G62200.1	*-*-	Putative endonuclease or glycosyl hydrolase LENGTH=673	IPR024768 (Meiosis arrest female protein 1), IPR025677 (OST-HTH associated domain), IPR029060 (PIN domain-like)	GO:0005777 (peroxisome), GO:0010468 (regulation of gene expression)
Niben101Scf01025g13019.1	sp|Q9LQZ5|SRS5_ARATH	***-	Protein SHI RELATED SEQUENCE 5	IPR007818 (Protein of unknown function DUF702)	
Niben101Scf14606g00002.1	sp|Q64092|TFE3_MOUSE	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04777g03008.1	AT1G09910.1	***-	Rhamnogalacturonate lyase family protein LENGTH=675	IPR008979 (Galactose-binding domain-like), IPR010325 (Rhamnogalacturonate lyase), IPR011013 (Galactose mutarotase-like domain), IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf23978g00001.1	sp|Q8VY21|TLP3_ARATH	***-	Tubby-like F-box protein 3	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf05078g08009.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01994g02012.1	sp|Q9XF97|RL4_PRUAR	***-	60S ribosomal protein L4	IPR002136 (Ribosomal protein L4/L1e), IPR023574 (Ribosomal protein L4 domain), IPR025755 (60S ribosomal protein L4, C-terminal domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf12305g00010.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf08268g00011.1	ref|NP_191316.5|	***-	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gb|AEE79673.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf11009g00005.1	sp|O04450|TCPE_ARATH	*-*-	T-complex protein 1 subunit epsilon	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process)
Niben101Scf09819g01001.1	sp|O14435|GBB_CRYPA	*-**	Guanine nucleotide-binding protein subunit beta	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf00187g02022.1	AT3G19610.1	*-*-	Plant protein of unknown function (DUF936) LENGTH=640	IPR010341 (Protein of unknown function DUF936, plant)	
Niben101Ctg15093g00004.1	sp|O65837|LCYE_SOLLC	***-	Lycopene epsilon cyclase, chloroplastic	IPR008671 (Lycopene cyclase-type, FAD-binding)	GO:0016117 (carotenoid biosynthetic process), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen)
Niben101Scf00286g01008.1	sp|P33077|IAA4_ARATH	***-	Auxin-responsive protein IAA4	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Ctg14679g00001.1	sp|P52711|CBP23_HORVU	****	Serine carboxypeptidase II-3	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03123g00016.1	AT3G28050.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=367	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf00149g08004.1	sp|A4J650|NUON_DESRM	--*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf24236g00001.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf00317g07014.1	ref|NP_001148114.1|	****	transferase, transferring glycosyl groups precursor [Zea mays] gb|ACG29772.1| transferase, transferring glycosyl groups [Zea mays]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf05203g03014.1	AT3G47700.1	***-	RINT-1 / TIP-1 family LENGTH=795	IPR007528 (RINT-1/TIP-20)	GO:0005783 (endoplasmic reticulum), GO:0048193 (Golgi vesicle transport)
Niben101Scf04473g06001.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02025g00011.1	sp|Q9SBV9|CYCLD_ANTMH	*-*-	Transcription factor CYCLOIDEA	IPR005333 (Transcription factor, TCP)	
Niben101Scf10616g01004.1	sp|Q5ZL54|K0907_CHICK	*-*-	UPF0469 protein KIAA0907 homolog	IPR004088 (K Homology domain, type 1)	GO:0003723 (RNA binding)
Niben101Scf02957g01004.1	sp|Q9ASU1|DGAT2_ARATH	*-*-	Diacylglycerol O-acyltransferase 2	IPR003656 (Zinc finger, BED-type)	GO:0003677 (DNA binding)
Niben101Scf00327g01039.1			Unknown protein		
Niben101Scf05750g03024.1	AT5G50370.1	****	Adenylate kinase family protein LENGTH=248	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004017 (adenylate kinase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0016776 (phosphotransferase activity, phosphate group as acceptor), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf04764g00005.1	AT1G48910.1	****	Flavin-containing monooxygenase family protein LENGTH=383	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01999g03014.1	AT1G53780.2	*-**	peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases LENGTH=620	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Ctg12168g00004.1	sp|O80944|AKRC8_ARATH	--**	Aldo-keto reductase family 4 member C8	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00165g09001.1	AT2G27230.1	*-*-	transcription factor-related LENGTH=650	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf26225g00006.1	ref|NP_001068343.1|	*-*-	product [Oryza sativa Japonica Group]	IPR007658 (Protein of unknown function DUF594)	
Niben101Scf03619g04005.1	sp|Q11207|PARP2_ARATH	***-	Poly [ADP-ribose] polymerase 2	IPR003034 (SAP domain), IPR004102 (Poly(ADP-ribose) polymerase, regulatory domain), IPR008893 (WGR domain), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain)	GO:0003950 (NAD+ ADP-ribosyltransferase activity), GO:0006471 (protein ADP-ribosylation)
Niben101Scf13259g00024.1	ref|WP_032467012.1|	--*-	RNA methyltransferase [Streptococcus pyogenes]		
Niben101Scf10718g00018.1	AT1G07710.1	***-	Ankyrin repeat family protein LENGTH=543	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf00674g06003.1	gb|AAC28216.1|	--*-	T24M8.9 gene product [Arabidopsis thaliana] emb|CAB80815.1| putative protein [Arabidopsis thaliana]		
Niben101Scf12762g00004.1	dbj|BAD69237.1|	*-*-	aminotransferase-like [Oryza sativa Japonica Group]	IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf03147g05002.1	sp|Q9M331|PTR45_ARATH	***-	Protein NRT1/ PTR FAMILY 5.7	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf00821g12012.1	AT5G54290.2	*-**	cytochrome c biogenesis protein family LENGTH=355	IPR003834 (Cytochrome c assembly protein, transmembrane domain)	GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0055114 (oxidation-reduction process)
Niben101Scf13005g00011.1	sp|Q8VXU6|DI194_ARATH	***-	Protein DEHYDRATION-INDUCED 19 homolog 4	IPR027935 (Protein dehydration-induced 19, C-terminal)	
Niben101Scf14634g01003.1	sp|Q9M1E1|PTR38_ARATH	*-*-	Protein NRT1/ PTR FAMILY 2.6		
Niben101Scf00626g01007.1	sp|Q79666|POL_HV1MV	--*-	Gag-Pol polyprotein	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf11215g00030.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf19975g01014.1	sp|Q42572|DNLI1_ARATH	****	DNA ligase 1	IPR000977 (DNA ligase, ATP-dependent), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003677 (DNA binding), GO:0003909 (DNA ligase activity), GO:0003910 (DNA ligase (ATP) activity), GO:0005524 (ATP binding), GO:0006281 (DNA repair), GO:0006310 (DNA recombination), GO:0051103 (DNA ligation involved in DNA repair), GO:0071897 (DNA biosynthetic process)
Niben101Scf01534g01008.1	gb|KEH17374.1|	*-**	calmodulin-binding protein [Medicago truncatula]	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005), IPR027401 (Myosin-like IQ motif-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf03366g00005.1	sp|Q9JHN8|STK19_MOUSE	--*-	Serine/threonine-protein kinase 19	IPR018865 (Serine-threonine protein kinase 19)	
Niben101Scf03705g02012.1	ref|XP_007049039.1|	*-*-	FAR1-related sequence 2, putative isoform 5 [Theobroma cacao] gb|EOX93196.1| FAR1-related sequence 2, putative isoform 5 [Theobroma cacao]	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf02407g03001.1	AT1G80270.1	***-	PENTATRICOPEPTIDE REPEAT 596 LENGTH=596	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00249g01012.1			Unknown protein		
Niben101Scf09869g01017.1	ref|XP_002871133.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH47392.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf09403g00017.1	sp|Q8S8T4|UXS4_ARATH	***-	UDP-glucuronic acid decarboxylase 4	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf05767g00009.1	gb|AES76179.2|	*-*-	cytochrome P450 family 72 protein [Medicago truncatula]	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06394g08019.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf07741g05016.1	ref|XP_003609239.1|	****	E3 ubiquitin-protein ligase MARCH3 [Medicago truncatula] gb|AES91436.1| zinc finger protein [Medicago truncatula]	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Ctg12211g00001.1	gb|ADX66725.1|	***-	xyloglucan-specific endoglucanase inhibitor protein 2 [Solanum tuberosum]	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04083g03014.1	sp|P46822|KLC_CAEEL	*-*-	Kinesin light chain	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf11609g02001.1			Unknown protein		
Niben101Scf03232g01001.1	AT5G11090.1	*-*-	serine-rich protein-related LENGTH=217		
Niben101Scf25893g00012.1	gb|KEH43907.1|	--*-	glycoprotein membrane precursor GPI-anchored protein [Medicago truncatula]		
Niben101Scf04323g04024.1	sp|B5ZXR9|RL20_RHILW	***-	50S ribosomal protein L20	IPR005813 (Ribosomal protein L20)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf02631g05012.1	sp|Q0H904|XYNC_ASPFU	*-*-	Endo-1,4-beta-xylanase C	IPR001000 (Glycoside hydrolase, family 10), IPR008979 (Galactose-binding domain-like), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03855g04005.1	AT5G18670.1	****	beta-amylase 3 LENGTH=536	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf11355g01018.1	ref|XP_007033392.1|	***-	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1 [Theobroma cacao] gb|EOY04318.1| Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1 [Theobroma cacao]		
Niben101Scf07377g00001.1	gb|KEH33472.1|	***-	ABC-type transport system protein [Medicago truncatula]	IPR003399 (Mammalian cell entry-related)	
Niben101Scf09170g00002.1	sp|Q9CAJ0|P2C16_ARATH	****	Protein phosphatase 2C 16	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf07008g01010.1	AT1G15230.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=155		
Niben101Scf04992g00008.1	emb|CDX86669.1|	--*-	BnaC08g00340D [Brassica napus]		
Niben101Scf01664g05011.1	AT3G44970.1	***-	Cytochrome P450 superfamily protein LENGTH=479	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf19211g00008.1	sp|O23086|ALMTA_ARATH	****	Aluminum-activated malate transporter 10	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf08678g01003.1	emb|CDY38505.1|	***-	BnaA10g16530D [Brassica napus]		
Niben101Scf07515g01007.1	sp|Q8DLP6|ATPX_THEEB	-***	ATP synthase subunit b'	IPR002146 (ATPase, F0 complex, subunit B/B', bacterial/chloroplast)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf10938g00012.1	sp|Q98N47|RL14_RHILO	****	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf02074g02057.1	gb|AAF14763.1|AF197771_1	*-*-	maturase, partial (mitochondrion) [Degeneria vitiensis]	IPR000477 (Reverse transcriptase domain)	
Niben101Scf39284g00001.1	sp|Q39261|ZFP2_ARATH	***-	Zinc finger protein 2	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf02073g05007.1	sp|Q6DRD9|ABHDB_DANRE	***-	Alpha/beta hydrolase domain-containing protein 11	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07133g00014.1	sp|P05499|ATP6_TOBAC	****	ATP synthase subunit a	IPR000568 (ATPase, F0 complex, subunit A)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf01166g01007.1	ref|XP_002516334.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF46081.1| conserved hypothetical protein [Ricinus communis]		
Niben101Ctg15594g00001.1	sp|B0WII7|WIBG_CULQU	*-*-	Partner of Y14 and mago	IPR015362 (Exon junction complex, Pym)	GO:0005515 (protein binding)
Niben101Scf05456g00005.1	AT4G31390.1	*-*-	Protein kinase superfamily protein LENGTH=682	IPR004147 (UbiB domain)	
Niben101Scf01950g03015.1	AT1G67320.3	****	DNA primase, large subunit family LENGTH=490	IPR007238 (DNA primase large subunit, eukaryotic/archaeal)	GO:0003896 (DNA primase activity), GO:0006269 (DNA replication, synthesis of RNA primer)
Niben101Scf00177g12003.1	sp|O04300|UPTG_PEA	***-	Alpha-1,4-glucan-protein synthase [UDP-forming]	IPR004901 (Reversibly glycosylated polypeptide family)	GO:0016866 (intramolecular transferase activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf02160g02006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf01078g00026.1	sp|Q8L8T2|GRXC1_ARATH	***-	Glutaredoxin-C1	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf09654g00007.1	sp|P04771|GLNA2_PHAVU	*-*-	Glutamine synthetase PR-2		
Niben101Scf10031g08007.1	AT3G05840.2	****	Protein kinase superfamily protein LENGTH=409	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00321g05003.1	sp|Q5XI59|RNF10_RAT	--*-	RING finger protein 10	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05157g00008.1	sp|B8G4Q6|FTSH_CHLAD	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf05923g01001.1	sp|O96552|CHMP1_DICDI	***-	Charged multivesicular body protein 1	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf00959g00020.1	sp|Q9LE59|GAUT1_ARATH	--**	Polygalacturonate 4-alpha-galacturonosyltransferase	IPR029993 (Plant galacturonosyltransferase GAUT)	GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf03059g00012.1	sp|Q651X6|CSLE6_ORYSJ	****	Cellulose synthase-like protein E6	IPR005150 (Cellulose synthase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf05621g01015.1	sp|A4IG72|TGFA1_DANRE	***-	Transforming growth factor-beta receptor-associated protein 1 homolog	IPR000547 (Clathrin, heavy chain/VPS, 7-fold repeat), IPR001180 (Citron-like), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR019452 (Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1), IPR019453 (Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2)	GO:0005083 (small GTPase regulator activity), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport)
Niben101Scf00592g02012.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf09649g03001.1	sp|P48603|CAPZB_DROME	****	F-actin-capping protein subunit beta	IPR001698 (F-actin-capping protein subunit beta)	GO:0003779 (actin binding), GO:0005737 (cytoplasm), GO:0008290 (F-actin capping protein complex), GO:0030036 (actin cytoskeleton organization), GO:0051016 (barbed-end actin filament capping)
Niben101Scf06529g06029.1	sp|Q49ZF2|RL18_STAS1	-**-	50S ribosomal protein L18	IPR005484 (Ribosomal protein L18/L5)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00212g03010.1	AT3G14940.1	****	phosphoenolpyruvate carboxylase 3 LENGTH=968	IPR021135 (Phosphoenolpyruvate carboxylase)	GO:0003824 (catalytic activity), GO:0006099 (tricarboxylic acid cycle), GO:0008964 (phosphoenolpyruvate carboxylase activity), GO:0015977 (carbon fixation)
Niben101Scf03332g02014.1	ref|XP_005650247.1|	****	TOR kinase binding protein [Coccomyxa subellipsoidea C-169] gb|EIE25703.1| TOR kinase binding protein [Coccomyxa subellipsoidea C-169]	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf06423g02009.1	sp|Q651X6|CSLE6_ORYSJ	****	Cellulose synthase-like protein E6	IPR005150 (Cellulose synthase)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf04629g02001.1	sp|Q93VH2|BBD2_ARATH	****	Bifunctional nuclease 2	IPR003729 (Bifunctional nuclease domain)	GO:0004518 (nuclease activity)
Niben101Scf02908g02009.1	AT4G38500.1	***-	Protein of unknown function (DUF616) LENGTH=499	IPR006852 (Protein of unknown function DUF616)	
Niben101Scf06769g04014.1	sp|P15007|ENO_DROME	***-	Enolase	IPR000941 (Enolase), IPR029017 (Enolase N-terminal domain-like), IPR029065 (Enolase C-terminal domain-like)	GO:0000015 (phosphopyruvate hydratase complex), GO:0000287 (magnesium ion binding), GO:0004634 (phosphopyruvate hydratase activity), GO:0006096 (glycolytic process)
Niben101Scf11245g01002.1	sp|Q60AU6|ERPA2_METCA	****	Iron-sulfur cluster insertion protein ErpA 2	IPR000361 (FeS cluster biogenesis), IPR016092 (FeS cluster insertion protein)	GO:0005198 (structural molecule activity), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf00497g02004.1	AT1G23180.1	***-	ARM repeat superfamily protein LENGTH=834	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf01970g07015.1	sp|Q43270|PLDA1_MAIZE	*-*-	Phospholipase D alpha 1	IPR015679 (Phospholipase D family)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00751g02007.1	gb|AAQ09996.1|	*-*-	S3 self-incompatibility locus-linked pollen 3.15 protein [Petunia integrifolia subsp. inflata]		
Niben101Scf05712g03011.1	tpg|DAA41303.1|	*-**	TPA: metal ion binding protein [Zea mays]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf03345g00009.1	AT1G13110.1	***-	cytochrome P450, family 71 subfamily B, polypeptide 7 LENGTH=504	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02665g10009.1	AT1G68185.1	***-	Ubiquitin-like superfamily protein LENGTH=215		
Niben101Scf11123g00023.1	sp|P44797|PUR8_HAEIN	****	Adenylosuccinate lyase	IPR000362 (Fumarate lyase family), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0004018 (N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity), GO:0006188 (IMP biosynthetic process), GO:0009152 (purine ribonucleotide biosynthetic process)
Niben101Scf01453g06001.1	sp|Q96520|PER12_ARATH	****	Peroxidase 12	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf12928g01020.1	sp|Q9FMZ4|Y5270_ARATH	***-	B3 domain-containing protein	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf03915g03001.1			Unknown protein		
Niben101Scf02381g04018.1	ref|XP_007033257.1|	****	Transmembrane isoform 1 [Theobroma cacao] gb|EOY04183.1| Transmembrane isoform 1 [Theobroma cacao]	IPR002524 (Cation efflux protein)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf04875g02012.1	AT2G37730.1	***-	Protein of unknown function (DUF604) LENGTH=532	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf01847g08004.1	gb|ACM43715.1|	*-*-	phosphatidylinositol-specific phospholipase c [Listeria monocytogenes]	IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain)	GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Scf03852g01006.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf07894g01003.1	gb|KEH20675.1|	--*-	MYB-like transcription factor family protein [Medicago truncatula]		
Niben101Scf00018g02003.1	AT1G43710.1	****	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein LENGTH=482	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00305g04005.1	AT5G66530.1	***-	Galactose mutarotase-like superfamily protein LENGTH=307	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf28415g00013.1			Unknown protein		
Niben101Scf05519g00005.1	sp|Q8LDS5|THO7A_ARATH	****	THO complex subunit 7A	IPR008501 (THO complex subunit 7/Mft1)	GO:0000445 (THO complex part of transcription export complex), GO:0006397 (mRNA processing)
Niben101Scf02831g06009.1	sp|Q70Z16|NAP1D_TOBAC	****	Nucleosome assembly protein 1;4	IPR002164 (Nucleosome assembly protein (NAP))	GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf01249g01005.1	AT1G48450.1	***-	Protein of unknown function (DUF760) LENGTH=423	IPR008479 (Protein of unknown function DUF760)	
Niben101Scf05849g01006.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03755g01004.1	gb|AET01484.2|	***-	Avr9/Cf-9 rapidly elicited protein [Medicago truncatula]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Ctg15369g00002.1	emb|CDX97183.1|	*-*-	BnaC09g44420D [Brassica napus]		
Niben101Scf06872g03006.1	sp|Q9NGQ2|KIF1_DICDI	*-**	Kinesin-related protein 1	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf08033g01003.1	AT1G06060.1	***-	LisH and RanBPM domains containing protein LENGTH=213	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR013144 (CRA domain), IPR024964 (CTLH/CRA C-terminal to LisH motif domain)	GO:0005515 (protein binding)
Niben101Scf17372g00016.1	AT1G16220.1	***-	Protein phosphatase 2C family protein LENGTH=491	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf07517g00002.1	AT2G38710.1	***-	AMMECR1 family LENGTH=214	IPR002733 (AMMECR1 domain), IPR023473 (AMMECR1), IPR027485 (AMMECR1, N-terminal)	
Niben101Scf04514g01006.1	sp|Q9LMP7|GOS11_ARATH	****	Golgi SNAP receptor complex member 1-1	IPR023601 (Golgi SNAP receptor complex, subunit 1)	GO:0000139 (Golgi membrane), GO:0005801 (cis-Golgi network), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0016021 (integral component of membrane)
Niben101Scf02351g08006.1	ref|XP_002521307.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF41081.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00664g00021.1	sp|Q42510|GNOM_ARATH	****	ARF guanine-nucleotide exchange factor GNOM	IPR000904 (Sec7 domain), IPR023394 (Sec7 domain, alpha orthogonal bundle)	GO:0005086 (ARF guanyl-nucleotide exchange factor activity), GO:0032012 (regulation of ARF protein signal transduction)
Niben101Scf11779g00007.1	sp|Q93W54|ICMTB_ARATH	--*-	Protein-S-isoprenylcysteine O-methyltransferase B	IPR007318 (Phospholipid methyltransferase)	
Niben101Scf02218g01008.1	AT1G21480.1	***-	Exostosin family protein LENGTH=462	IPR004263 (Exostosin-like)	
Niben101Scf05855g04020.1	AT3G60480.1	***-	unknown protein; Has 17 Blast hits to 17 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=111		
Niben101Scf04260g02013.1	sp|Q9LFN8|GLR26_ARATH	*-*-	Glutamate receptor 2.6	IPR028082 (Periplasmic binding protein-like I)	
Niben101Scf05540g00006.1	ref|XP_002530829.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF31542.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00712g15020.1	ref|NP_182050.2|	*-*-	Integral membrane protein hemolysin-III like protein [Arabidopsis thaliana] gb|AEC10529.1| Integral membrane protein hemolysin-III like protein [Arabidopsis thaliana]		
Niben101Scf05391g02006.1	gb|EMT05353.1|	*-*-	Werner syndrome ATP-dependent helicase [Aegilops tauschii]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf01376g04032.1	sp|Q9SEE4|PIRL_SOLLC	***-	Pirin-like protein	IPR012093 (Pirin), IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf00961g04002.1	sp|B0TUI1|RL27_SHEHH	***-	50S ribosomal protein L27	IPR001684 (Ribosomal protein L27)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10306g00001.1	gb|KEH37527.1|	***-	EEIG1/EHBP1 protein amino-terminal domain protein [Medicago truncatula]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf09131g01005.1	emb|CDX90916.1|	*-*-	BnaA03g25960D [Brassica napus]	IPR003892 (Ubiquitin system component Cue)	GO:0005515 (protein binding)
Niben101Scf02807g01004.1			Unknown protein		
Niben101Scf03053g00007.1	sp|Q3SWX0|NIPA2_BOVIN	****	Magnesium transporter NIPA2	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf19119g00001.1			Unknown protein		
Niben101Scf03849g00014.1	AT3G54040.1	***-	PAR1 protein LENGTH=183	IPR009489 (PAR1)	
Niben101Scf02413g02003.1	sp|Q38857|XTH22_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf01352g02003.1	sp|P51106|DFRA_HORVU	--*-	Dihydroflavonol-4-reductase	IPR016040 (NAD(P)-binding domain)	
Niben101Scf00849g01014.1	gb|ETJ05805.1|	--*-	ABC superfamily ATP binding cassette transporter, membrane protein [Streptococcus parasanguinis DORA_23_24]		
Niben101Scf00483g03003.1	sp|Q9C9Y4|FB136_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf12585g00002.1	AT1G68110.1	***-	ENTH/ANTH/VHS superfamily protein LENGTH=379	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf10259g00005.1	gb|ABA98345.2|	*-*-	Plastocyanin-like domain containing protein, expressed [Oryza sativa Japonica Group]	IPR008972 (Cupredoxin)	
Niben101Scf05519g02001.1	AT2G41090.1	****	Calcium-binding EF-hand family protein LENGTH=191	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01876g00009.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY), IPR018872 (Zn-cluster domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg14751g00004.1	AT5G67570.1	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=798		
Niben101Scf02982g00009.1	ref|XP_007034250.1|	***-	DNA-directed RNA polymerase subunit beta' [Theobroma cacao] gb|EOY05176.1| DNA-directed RNA polymerase subunit beta' [Theobroma cacao]		
Niben101Scf11271g00006.1	sp|Q9FQ27|TPSGB_SOLHA	--**	(E,E)-germacrene B synthase	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf03277g02014.1	sp|Q9DD03|RAB13_MOUSE	***-	Ras-related protein Rab-13	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf15187g03006.1	sp|Q5JTN6|WDR38_HUMAN	***-	WD repeat-containing protein 38	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf04570g02004.1	emb|CDY34131.1|	*-*-	BnaC01g28710D [Brassica napus]		
Niben101Scf02565g02003.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR003657 (DNA-binding WRKY), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08890g00003.1	sp|Q9ZTZ7|KEA1_ARATH	--*-	K(+) efflux antiporter 1, chloroplastic		
Niben101Scf10980g00016.1	AT5G63640.1	***-	ENTH/VHS/GAT family protein LENGTH=447		
Niben101Scf01858g00003.1	AT4G32390.1	***-	Nucleotide-sugar transporter family protein LENGTH=350	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf10107g00004.1	ref|XP_002520470.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF41883.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03541g00018.1	sp|Q9FJJ4|FB298_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf03341g00003.1	sp|Q9M9M6|NDUS6_ARATH	***-	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial	IPR019401 (Zinc finger, CHCC-type)	
Niben101Scf17652g00005.1	sp|B4UHA8|APAG_ANASK	*-*-	Protein ApaG	IPR001810 (F-box domain), IPR007474 (ApaG domain)	GO:0005515 (protein binding)
Niben101Scf00854g04028.1	sp|A6Q1H7|RS10_NITSB	-**-	30S ribosomal protein S10	IPR001848 (Ribosomal protein S10), IPR027486 (Ribosomal protein S10 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00063g14001.1	AT3G47550.3	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=288	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022143 (Protein of unknown function DUF3675)	GO:0008270 (zinc ion binding)
Niben101Scf00276g01003.1	sp|B7J7X8|DNAJ_ACIF2	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf05081g00003.1	AT2G37030.1	***-	SAUR-like auxin-responsive protein family LENGTH=124	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02581g05011.1	AT1G09760.1	***-	U2 small nuclear ribonucleoprotein A LENGTH=249	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf01372g01009.1	ref|XP_002521255.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF41111.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02399g05001.1	sp|Q940H3|TBL36_ARATH	***-	Protein trichome birefringence-like 36	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf03802g00020.1	sp|Q9ZVR1|PP2B5_ARATH	***-	F-box protein PP2-B5	IPR025886 (Phloem protein 2-like)	
Niben101Scf08702g00007.1	sp|O81057|ASK14_ARATH	--*-	SKP1-like protein 14	IPR016072 (SKP1 component, dimerisation)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf01185g02002.1	sp|C3MZB8|RL11_SULIA	***-	50S ribosomal protein L11	IPR000911 (Ribosomal protein L11/L12)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03751g00003.1	sp|Q6X7J9|WOX4_ARATH	***-	WUSCHEL-related homeobox 4	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf01051g03012.1	sp|Q84LH3|WEX_ARATH	*-**	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf04445g03003.1	sp|P87047|HSP71_PARBA	*-*-	Heat shock 70 kDa protein 1	IPR013126 (Heat shock protein 70 family)	
Niben101Scf05056g03033.1	sp|Q39649|2SS_CUCMA	--*-	2S albumin	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf11684g02005.1	emb|CDX69692.1|	***-	BnaA10g20410D [Brassica napus]	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf00233g01006.1	sp|Q9ZS51|PMP22_ARATH	****	Peroxisomal membrane protein PMP22	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf02564g09002.1	sp|Q9SUG3|ITPK2_ARATH	****	Inositol-tetrakisphosphate 1-kinase 2	IPR008656 (Inositol-tetrakisphosphate 1-kinase)	GO:0000287 (magnesium ion binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0032957 (inositol trisphosphate metabolic process), GO:0047325 (inositol tetrakisphosphate 1-kinase activity), GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity), GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
Niben101Scf07743g00003.1	sp|Q9FXJ1|GDL6_ARATH	--*-	GDSL esterase/lipase		
Niben101Scf05135g03009.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY), IPR018872 (Zn-cluster domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01881g02018.1	ref|XP_007029831.1|	-**-	Prefoldin chaperone subunit family protein [Theobroma cacao] gb|EOY10333.1| Prefoldin chaperone subunit family protein [Theobroma cacao]		
Niben101Scf02230g02002.1	sp|Q0SRE2|GRPE_CLOPS	*-*-	Protein GrpE	IPR000740 (GrpE nucleotide exchange factor)	GO:0000774 (adenyl-nucleotide exchange factor activity), GO:0006457 (protein folding), GO:0042803 (protein homodimerization activity), GO:0051087 (chaperone binding)
Niben101Scf02074g04030.1	AT2G07739.1	*-*-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf00309g02001.1	AT4G14750.1	***-	IQ-domain 19 LENGTH=387	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf13622g01019.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR029338 (Tumour suppressing sub-chromosomal transferable candidate 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12289g00012.1	sp|Q06850|CDPK1_ARATH	*-**	Calcium-dependent protein kinase 1	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03085g07012.1			Unknown protein		
Niben101Scf02831g03003.1	AT1G72710.1	***-	casein kinase 1-like protein 2 LENGTH=465	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06998g02002.1	sp|O65351|SUBL_ARATH	***-	Subtilisin-like protease	IPR009020 (Proteinase inhibitor, propeptide), IPR010435 (Peptidase S8A, DUF1034 C-terminal), IPR015500 (Peptidase S8, subtilisin-related), IPR023827 (Peptidase S8, subtilisin,  Asp-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0005618 (cell wall), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf05368g07007.1	sp|Q9LMN7|WAK5_ARATH	*-**	Wall-associated receptor kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07034g08010.1			Unknown protein		
Niben101Scf00218g01001.1	AT5G38610.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=199	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00317g02010.1	ref|XP_007039812.1|	***-	G2484-1 protein, putative isoform 5 [Theobroma cacao] gb|EOY24313.1| G2484-1 protein, putative isoform 5 [Theobroma cacao]	IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf04339g04003.1	sp|Q06AU6|RAB5A_PIG	***-	Ras-related protein Rab-5A	IPR003579 (Small GTPase superfamily, Rab type), IPR017231 (Small GTPase superfamily, Tem1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf05190g00001.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01492g01015.1	sp|Q8LED3|TBL3_ARATH	*-*-	Protein trichome birefringence-like 3	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf11037g01009.1	ref|XP_007024095.1|	*-*-	Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 1 [Theobroma cacao] gb|EOY26717.1| Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 1 [Theobroma cacao]		
Niben101Scf31047g00005.1	sp|Q54PM7|NAGK_DICDI	***-	N-acetyl-D-glucosamine kinase	IPR002731 (ATPase, BadF/BadG/BcrA/BcrD type)	
Niben101Scf00859g01014.1	sp|Q3IRQ4|LEUC_NATPD	*-*-	3-isopropylmalate dehydratase large subunit	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf02891g01008.1	sp|Q42438|CDPK8_ARATH	****	Calcium-dependent protein kinase 8	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01634g07030.1	sp|Q5NDL3|EOGT_CHICK	*-**	EGF domain-specific O-linked N-acetylglucosamine transferase	IPR007657 (Glycosyltransferase AER61, uncharacterised)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf28085g00002.1	ref|XP_002517764.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF44571.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00425g03002.1	emb|CDX73116.1|	*-*-	BnaC06g35640D [Brassica napus]	IPR007656 (Zein-binding domain)	
Niben101Scf07058g02006.1	sp|Q9ZVH3|ORC6_ARATH	****	Origin recognition complex subunit 6	IPR008721 (Origin recognition complex, subunit 6)	GO:0003677 (DNA binding), GO:0005664 (nuclear origin of replication recognition complex), GO:0006260 (DNA replication)
Niben101Scf03116g00005.1	sp|Q9FL82|FB270_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05030g05006.1	sp|O64896|TPPA_ARATH	****	Trehalose-phosphate phosphatase A	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf00046g00003.1	sp|Q6BPT6|AIM32_DEBHA	*-*-	Altered inheritance of mitochondria protein 32	IPR009737 (Sucraseferredoxin-like)	
Niben101Scf00797g09001.1	AT1G21200.1	*-*-	sequence-specific DNA binding transcription factors LENGTH=443		
Niben101Scf00233g01005.1	ref|XP_002519590.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF42801.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00286g05014.1	ref|XP_002523935.1|	****	hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gb|EEF38422.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02210g09009.1	emb|CDY09785.1|	***-	BnaC09g43760D [Brassica napus]	IPR029338 (Tumour suppressing sub-chromosomal transferable candidate 4)	
Niben101Scf15903g01004.1	sp|Q5NN19|GUAA_ZYMMO	--*-	GMP synthase [glutamine-hydrolyzing]	IPR011697 (Peptidase C26), IPR029062 (Class I glutamine amidotransferase-like)	GO:0006541 (glutamine metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf06530g00004.1	AT5G50760.1	***-	SAUR-like auxin-responsive protein family LENGTH=183	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01020g00014.1	sp|Q93YF5|SUVH1_TOBAC	****	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1	IPR003105 (SRA-YDG), IPR015947 (PUA-like domain)	GO:0042393 (histone binding)
Niben101Scf04316g05002.1	sp|Q9M9F9|ICR4_ARATH	*-*-	Interactor of constitutive active ROPs 4		
Niben101Scf01374g03024.1	emb|CDX97719.1|	***-	BnaA05g23600D [Brassica napus]		
Niben101Scf12481g01005.1	gb|AES91542.2|	*-*-	epidermal patterning factor-like protein [Medicago truncatula]		
Niben101Scf02474g02007.1	sp|Q4J9R1|GLPK1_SULAC	***-	Glycerol kinase 1	IPR018485 (Carbohydrate kinase, FGGY, C-terminal)	GO:0005975 (carbohydrate metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf03860g03001.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00073g06002.1	sp|A3Q196|ARC_MYCSJ	*-*-	Proteasome-associated ATPase	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf00288g14003.1	sp|Q9LV01|ETOL2_ARATH	***-	ETO1-like protein 2	IPR011333 (BTB/POZ fold), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04558g01013.1	sp|O49884|RL30_LUPLU	***-	60S ribosomal protein L30	IPR000231 (Ribosomal protein L30e), IPR022991 (Ribosomal protein L30e, conserved site), IPR029064 (50S ribosomal protein L30e-like)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03128g03008.1	sp|Q9FQ03|XRN3_ARATH	****	5'-3' exoribonuclease 3	IPR027073 (5'-3' exoribonuclease)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity), GO:0004534 (5'-3' exoribonuclease activity), GO:0005634 (nucleus), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008270 (zinc ion binding)
Niben101Scf04198g07005.1	ref|XP_003588337.1|	*-*-	Ribosomal protein S10 [Medicago truncatula]		
Niben101Scf03671g03004.1			Unknown protein		
Niben101Scf06348g00038.1	sp|Q980U8|FEN_SULSO	***-	Flap endonuclease 1	IPR006085 (XPG N-terminal), IPR006086 (XPG-I domain), IPR020045 (5'-3' exonuclease, C-terminal domain), IPR029060 (PIN domain-like)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0004518 (nuclease activity), GO:0006281 (DNA repair)
Niben101Scf01176g00003.1	AT2G17290.1	****	Calcium-dependent protein kinase family protein LENGTH=544	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06734g01029.1	AT1G23890.2	*-*-	NHL domain-containing protein LENGTH=400	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0005515 (protein binding)
Niben101Scf02603g02006.1	AT2G28260.1	****	cyclic nucleotide-gated channel 15 LENGTH=678	IPR005821 (Ion transport domain), IPR014710 (RmlC-like jelly roll fold)	GO:0005216 (ion channel activity), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf07576g02010.1	AT2G21480.1	*-*-	Malectin/receptor-like protein kinase family protein LENGTH=871	IPR024788 (Malectin-like carbohydrate-binding domain)	
Niben101Scf05063g00010.1	sp|P24136|OPPD_BACSU	--*-	Oligopeptide transport ATP-binding protein OppD		
Niben101Scf08576g01014.1	AT2G45680.1	***-	TCP family transcription factor LENGTH=356	IPR005333 (Transcription factor, TCP)	
Niben101Scf00016g04006.1	AT1G35670.1	****	calcium-dependent protein kinase 2 LENGTH=495	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06761g01029.1	sp|Q089P5|RS17_SHEFN	-**-	30S ribosomal protein S17	IPR000266 (Ribosomal protein S17), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04083g04038.1	sp|Q01369|GBLP_NEUCR	*-**	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf01960g00004.1	ref|XP_007025378.1|	*-*-	SCAR family protein, putative isoform 2 [Theobroma cacao] gb|EOY28000.1| SCAR family protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf17612g01009.1	sp|Q54S04|RPB4_DICDI	--**	DNA-directed RNA polymerase II subunit rpb4	IPR005574 (RNA polymerase II, Rpb4)	GO:0000166 (nucleotide binding), GO:0003824 (catalytic activity), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0044237 (cellular metabolic process)
Niben101Scf08820g02005.1	AT3G51850.1	****	calcium-dependent protein kinase 13 LENGTH=528	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg14683g00002.1	sp|P27480|LOXA_PHAVU	*-*-	Linoleate 9S-lipoxygenase 1	IPR000907 (Lipoxygenase)	GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00807g03030.1	sp|Q9SGS2|HMGB9_ARATH	***-	High mobility group B protein 9	IPR001606 (ARID DNA-binding domain), IPR009071 (High mobility group box domain)	GO:0003677 (DNA binding)
Niben101Scf03764g04007.1	sp|Q84J70|DI193_ARATH	***-	Protein DEHYDRATION-INDUCED 19 homolog 3	IPR008598 (Drought induced 19 protein-like, zinc-binding domain), IPR027935 (Protein dehydration-induced 19, C-terminal)	
Niben101Scf04003g10014.1	ref|XP_007042470.1|	***-	Cyclin delta-3 isoform 1 [Theobroma cacao] gb|EOX98301.1| Cyclin delta-3 isoform 1 [Theobroma cacao]		
Niben101Scf04234g01007.1	sp|Q10SC8|CIPK9_ORYSJ	****	CBL-interacting protein kinase 9	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01269g04008.1	sp|A4RGU2|DBP4_MAGO7	*-**	ATP-dependent RNA helicase DBP4	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR025313 (Domain of unknown function DUF4217), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf08483g00016.1	gb|ADG39268.1|	*-*-	AT5G55820-like protein [Capsella grandiflora]	IPR005635 (Inner centromere protein, ARK-binding domain)	
Niben101Scf01557g09006.1	sp|Q9FLV9|SLAH3_ARATH	--*-	S-type anion channel SLAH3		
Niben101Scf01837g02001.1	sp|Q9ZU35|AB7G_ARATH	*-*-	ABC transporter G family member 7		
Niben101Scf02497g08022.1	gb|AFW60742.1|	*-*-	plastocyanin-like domain containing protein [Zea mays]	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf10316g02016.1	ref|XP_007026827.1|	*-*-	DNA double-strand break repair rad50 ATPase, putative isoform 1 [Theobroma cacao] gb|EOY07329.1| DNA double-strand break repair rad50 ATPase, putative isoform 1 [Theobroma cacao]		
Niben101Scf04473g00005.1	sp|Q84JM4|TPR3_ARATH	*-*-	Topless-related protein 3	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR027728 (Topless family)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05853g01005.1	AT5G59560.1	***-	sensitivity to red light reduced protein (SRR1) LENGTH=275	IPR012942 (Sensitivity To Red Light Reduced-like, SRR1)	
Niben101Scf07619g00006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00739g04039.1	sp|E2IUB0|CASS_KALDA	*-*-	Cycloartenol synthase	IPR018333 (Squalene cyclase)	GO:0003824 (catalytic activity), GO:0016866 (intramolecular transferase activity)
Niben101Scf02128g00025.1	sp|Q32904|CB23_PEA	--*-	Chlorophyll a-b binding protein 3, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf05425g00018.1	gb|AFI44329.1|	--*-	NADH dehydrogenase subunit 4 (mitochondrion) [Silene vulgaris]		
Niben101Scf12410g01006.1	gb|EMS48300.1|	*-*-	Sn1-specific diacylglycerol lipase alpha [Triticum urartu]		
Niben101Scf01368g00001.1	AT3G53520.4	***-	UDP-glucuronic acid decarboxylase 1 LENGTH=458	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf02520g00005.1	sp|Q9FIB6|PS12A_ARATH	***-	26S proteasome non-ATPase regulatory subunit 12 homolog A	IPR000717 (Proteasome component (PCI) domain)	GO:0005515 (protein binding)
Niben101Scf01313g06020.1			Unknown protein		
Niben101Scf00863g13007.1	sp|Q9SXZ2|FT_ARATH	***-	Protein FLOWERING LOCUS T	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf17372g00015.1	AT1G16220.1	***-	Protein phosphatase 2C family protein LENGTH=491	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf05188g01021.1	AT5G08350.1	***-	GRAM domain-containing protein / ABA-responsive protein-related LENGTH=222	IPR004182 (GRAM domain)	
Niben101Scf07517g00001.1	sp|Q9M376|VA727_ARATH	****	Vesicle-associated membrane protein 727	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf00428g07003.1	sp|Q9LJQ5|RTNLI_ARATH	*-*-	Reticulon-like protein B9	IPR003388 (Reticulon)	
Niben101Scf00980g03001.1	AT2G41310.1	*-*-	response regulator 3 LENGTH=225	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf00803g00001.1	sp|Q7XR52|CYSP1_ORYSJ	--*-	Cysteine protease 1	IPR013201 (Proteinase inhibitor I29, cathepsin propeptide)	
Niben101Scf09908g00004.1	sp|Q9UBZ4|APEX2_HUMAN	*-**	DNA-(apurinic or apyrimidinic site) lyase 2	IPR004808 (AP endonuclease 1), IPR005135 (Endonuclease/exonuclease/phosphatase), IPR010666 (Zinc finger, GRF-type)	GO:0004518 (nuclease activity), GO:0006281 (DNA repair), GO:0008270 (zinc ion binding)
Niben101Scf00119g08004.1	AT5G02460.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=399	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf14144g01018.1	AT3G51470.1	***-	Protein phosphatase 2C family protein LENGTH=361	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf06956g00022.1	AT4G13020.3	****	Protein kinase superfamily protein LENGTH=444	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02031g00029.1	AT1G72710.1	****	casein kinase 1-like protein 2 LENGTH=465	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07991g03004.1	sp|Q9SW80|BLH2_ARATH	***-	BEL1-like homeodomain protein 2	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01181g02012.1	sp|Q6YW64|DRB4_ORYSJ	*-*-	Double-stranded RNA-binding protein 4	IPR014720 (Double-stranded RNA-binding domain)	
Niben101Scf06819g05002.1	emb|CDY52695.1|	*-*-	BnaC04g54350D [Brassica napus]		
Niben101Scf10881g00009.1	sp|O79555|NU4M_LYCSM	--*-	NADH-ubiquinone oxidoreductase chain 4	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf01992g00007.1	gb|EWM28206.1|	*-**	cys met metabolism pyridoxal-phosphate-dependent enzyme [Nannochloropsis gaditana]	IPR000277 (Cys/Met metabolism, pyridoxal phosphate-dependent enzyme)	GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02908g03006.1	sp|Q8H0U4|TNPO1_ARATH	***-	Transportin-1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf02476g00005.1	sp|A1U1V3|SYE_MARHV	--*-	Glutamate--tRNA ligase		
Niben101Scf14837g02007.1	sp|Q9LR69|PPR8_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00288g16004.1	sp|Q9FGH4|E139_ARATH	***-	Glucan endo-1,3-beta-glucosidase 9	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf12969g01003.1	ref|NP_563872.1|	--*-	protein PRIN2 [Arabidopsis thaliana] ref|NP_001077502.1| protein PRIN2 [Arabidopsis thaliana] T10O24.14 [Arabidopsis thaliana] gb|AAM63692.1| unknown [Arabidopsis thaliana] gb|ABR46207.1| [Arabidopsis thaliana] gb|AEE28589.1| uncharacterized protein [Arabidopsis thaliana] gb|AEE28590.1| uncharacterized protein [Arabidopsis thaliana]		
Niben101Scf03925g02005.1	ref|XP_007050453.1|	***-	Serine/arginine repetitive matrix protein 2 isoform 1 [Theobroma cacao] gb|EOX94610.1| Serine/arginine repetitive matrix protein 2 isoform 1 [Theobroma cacao]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf01143g11001.1	sp|Q9LZ99|EXPA9_ARATH	***-	Expansin-A9	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Ctg16374g00011.1	sp|Q4R3X5|H2AJ_MACFA	***-	Histone H2A.J	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf02073g08002.1	sp|Q9SF78|GDL29_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00978g08003.1	sp|P17772|OSS2_PEA	***-	Organ-specific protein S2	IPR024489 (Organ specific protein)	
Niben101Scf05239g01032.1	sp|F4IAT2|THOC2_ARATH	*-*-	THO complex subunit 2		
Niben101Scf09993g00001.1	gb|AEM24937.1|	***-	thionin-like protein [Nicotiana tabacum]		
Niben101Scf00288g00001.1	AT5G07070.1	****	CBL-interacting protein kinase 2 LENGTH=456	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02425g00016.1	gb|KEH37527.1|	*-*-	EEIG1/EHBP1 protein amino-terminal domain protein [Medicago truncatula]	IPR018392 (LysM domain), IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf01917g13014.1	sp|Q94C27|FB84_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05332g00009.1	AT1G20430.1	***-	unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=116		
Niben101Scf05732g04031.1	sp|P50699|TLPH_ARATH	--*-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf01466g01006.1	sp|Q9JJK2|LANC2_MOUSE	***-	LanC-like protein 2	IPR007822 (Lanthionine synthetase C-like)	
Niben101Scf03393g02007.1	sp|Q67XQ0|Y4424_ARATH	***-	DUF21 domain-containing protein	IPR000644 (CBS domain)	
Niben101Scf09338g04003.1	sp|P50546|RPOB_ARATH	*-**	DNA-directed RNA polymerase subunit beta	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf11177g00010.1	AT5G24240.1	***-	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein LENGTH=574	IPR011009 (Protein kinase-like domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf08413g02005.1	sp|Q9VR89|PNO1_DROME	*-*-	RNA-binding protein pno1		
Niben101Scf08777g05023.1	sp|Q2QXB2|TLP14_ORYSJ	***-	Tubby-like F-box protein 14	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf07060g03009.1	ref|XP_007021650.1|	*-*-	Actin cyt pan1, putative isoform 1 [Theobroma cacao]		
Niben101Scf01409g06009.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03851g01009.1	sp|Q9LFT1|TBL21_ARATH	*-*-	Protein trichome birefringence-like 21	IPR029962 (Trichome birefringence-like family)	
Niben101Scf00854g05025.1	ref|YP_005090400.1|	*-*-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf02763g02006.1	AT4G34980.1	*-*-	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf06211g02002.1	AT4G35690.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=284	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf02929g02034.1	sp|A4QJD0|PSBL_AETCO	*-**	Photosystem II reaction center protein L	IPR003372 (Photosystem II PsbL), IPR013082 (Photosystem II cytochrome b559, alpha subunit, lumenal region)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf01556g04009.1	AT4G22290.1	*-*-	Ubiquitin-specific protease family C19-related protein LENGTH=445		
Niben101Scf07883g09002.1	sp|Q3E6Q1|PPR32_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06376g04006.1	sp|Q2H334|NM111_CHAGB	*-**	Pro-apoptotic serine protease NMA111	IPR001478 (PDZ domain)	GO:0005515 (protein binding)
Niben101Scf01594g02013.1	AT2G03200.1	***-	Eukaryotic aspartyl protease family protein LENGTH=461	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf11860g00010.1	sp|Q96QT6|PHF12_HUMAN	*-*-	PHD finger protein 12	IPR008395 (Agenet-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008080 (N-acetyltransferase activity), GO:0008270 (zinc ion binding)
Niben101Scf06890g01020.1	sp|Q1RMP0|RPA12_BOVIN	****	DNA-directed RNA polymerase I subunit RPA12	IPR001222 (Zinc finger, TFIIS-type), IPR012164 (DNA-directed RNA polymerase, subunit C11/M/9)	GO:0003676 (nucleic acid binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf02216g02002.1	sp|P57735|RAB25_HUMAN	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf06725g02017.1	sp|Q9LG26|PARN_ARATH	*-*-	Poly(A)-specific ribonuclease PARN	IPR005140 (eRF1 domain 1/Pelota-like), IPR006941 (Ribonuclease CAF1), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Scf16511g00013.1	sp|A6LXQ2|NUOD_CLOB8	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02440g01030.1			Unknown protein		
Niben101Scf02041g01024.1	AT5G66030.1	***-	Golgi-localized GRIP domain-containing protein LENGTH=788		
Niben101Scf07650g00002.1	AT5G43170.1	***-	zinc-finger protein 3 LENGTH=193	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf00448g18007.1	sp|Q84TH6|DIR23_ARATH	***-	Dirigent protein 23	IPR004265 (Plant disease resistance response protein)	
Niben101Scf02073g05006.1	sp|Q9Y140|DHRS7_DROME	****	Dehydrogenase/reductase SDR family protein 7-like	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf00050g00008.1	sp|P01122|RHO_APLCA	****	Ras-like GTP-binding protein RHO	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf06820g00002.1	ref|XP_003626920.1|	--**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf02756g01007.1	sp|Q8TQF8|TOP6A_METAC	--*-	Type 2 DNA topoisomerase 6 subunit A		
Niben101Scf09211g00005.1	sp|Q93VM8|COPT5_ARATH	****	Copper transporter 5	IPR007274 (Ctr copper transporter)	GO:0005375 (copper ion transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0035434 (copper ion transmembrane transport)
Niben101Scf04370g00008.1	sp|O24145|4CL1_TOBAC	***-	4-coumarate--CoA ligase 1	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf25930g00016.1	sp|Q49CC1|RBL_CUSSA	*-**	Ribulose bisphosphate carboxylase large chain	IPR000685 (Ribulose bisphosphate carboxylase, large subunit, C-terminal), IPR017443 (Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf01494g03008.1	ref|XP_002311586.2|	--*-	RNA recognition motif-containing family protein [Populus trichocarpa] gb|EEE88953.2| RNA recognition motif-containing family protein [Populus trichocarpa]		
Niben101Scf06596g00004.1	sp|Q9SJ24|EC12_ARATH	***-	Egg cell-secreted protein 1.2	IPR008502 (Prolamin-like domain)	
Niben101Scf06967g03015.1	sp|Q9LDU6|ST7R_ARATH	****	7-dehydrocholesterol reductase	IPR001171 (Ergosterol biosynthesis ERG4/ERG24)	GO:0016020 (membrane), GO:0016628 (oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00953g05001.1	sp|F8J2D4|CRVP_DRYCN	***-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf07019g02018.1	sp|F4IQJ4|GASAB_ARATH	***-	Gibberellin-regulated protein 11	IPR003854 (Gibberellin regulated protein)	
Niben101Scf00170g05008.1	sp|B3GZI6|KDSA_ACTP7	***-	2-dehydro-3-deoxyphosphooctonate aldolase	IPR006269 (3-deoxy-8-phosphooctulonate synthase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0008152 (metabolic process), GO:0008676 (3-deoxy-8-phosphooctulonate synthase activity), GO:0009058 (biosynthetic process)
Niben101Scf11589g00004.1	sp|Q9LVQ5|PP432_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04993g03006.1	ref|XP_002533037.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF29345.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00409g03001.1	sp|O82702|VATG1_TOBAC	****	V-type proton ATPase subunit G 1	IPR005124 (Vacuolar (H+)-ATPase G subunit)	GO:0015992 (proton transport), GO:0016471 (vacuolar proton-transporting V-type ATPase complex), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances)
Niben101Scf10465g03006.1	emb|CAJ53850.1|	*-*-	luminidependens [Arabidopsis thaliana]	IPR009057 (Homeodomain-like), IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf04276g02012.1	ref|WP_017851064.1|	--*-	exopolyphosphatase [Leptospira interrogans]		
Niben101Scf05491g07012.1	AT3G44510.2	***-	alpha/beta-Hydrolases superfamily protein LENGTH=325	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00837g00018.1	AT1G20460.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=106		
Niben101Scf07850g04002.1	sp|Q9CAC1|GUN8_ARATH	***-	Endoglucanase 8	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf10189g01002.1	sp|O24592|NCED1_MAIZE	*-*-	9-cis-epoxycarotenoid dioxygenase 1, chloroplastic	IPR004294 (Carotenoid oxygenase), IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf15077g01010.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04118g00004.1	ref|XP_007014707.1|	*-*-	Lipase/lipooxygenase, putative isoform 3 [Theobroma cacao] gb|EOY32326.1| Lipase/lipooxygenase, putative isoform 3 [Theobroma cacao]		
Niben101Scf06077g04014.1	AT3G51510.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). LENGTH=181		
Niben101Scf03154g04006.1	AT5G12470.1	***-	Protein of unknown function (DUF3411) LENGTH=386	IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf14900g00003.1	AT5G48310.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=1156		
Niben101Scf00854g03007.1			Unknown protein		
Niben101Scf01157g01014.1	sp|Q9STF0|LRKS3_ARATH	****	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03224g12005.1	sp|Q8CXK5|FOSB_OCEIH	-**-	Metallothiol transferase FosB	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf10150g06007.1	AT5G45360.1	***-	F-box family protein LENGTH=316	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00414g02003.1	sp|Q5R4K8|ZN615_PONAB	--*-	Zinc finger protein 615	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf02589g01004.1	sp|P81391|MYB05_ANTMA	*-*-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03147g08010.1	emb|CDY70616.1|	***-	BnaA03g54770D [Brassica napus]		
Niben101Scf04764g01004.1			Unknown protein		
Niben101Scf03310g00003.1	sp|O80341|EF102_ARATH	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07741g01004.1	sp|Q8LGN0|GLR27_ARATH	*-*-	Glutamate receptor 2.7	IPR028082 (Periplasmic binding protein-like I)	
Niben101Scf00994g05001.1	emb|CDY28651.1|	***-	BnaC09g32240D [Brassica napus]		
Niben101Scf08966g00001.1	sp|B2RLJ0|DNAJ_PORG3	--*-	Chaperone protein DnaJ	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf10191g00001.1	sp|Q9LRR2|TPS17_ARATH	****	Terpenoid synthase 17	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf05351g00013.1	sp|P46279|RPB7_SOYBN	****	DNA-directed RNA polymerase II subunit RPB7	IPR005576 (RNA polymerase Rpb7, N-terminal), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf03300g01003.1			Unknown protein		
Niben101Scf10374g00017.1	sp|O14236|NOG2_SCHPO	*-*-	Nucleolar GTP-binding protein 2	IPR012971 (Nucleolar GTP-binding protein 2, N-terminal domain), IPR024929 (Nucleolar GTP-binding protein 2)	GO:0005730 (nucleolus)
Niben101Scf00595g06006.1	sp|Q93Z32|SIPL1_ARATH	****	Signal peptide peptidase-like 1	IPR006639 (Presenilin/signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Ctg16407g00001.1	ref|XP_003625252.1|	--*-	HAT family dimerization domain containing protein [Medicago truncatula]	IPR003656 (Zinc finger, BED-type)	GO:0003677 (DNA binding)
Niben101Scf05552g03002.1	emb|CDY62980.1|	*-*-	BnaCnng41210D [Brassica napus]	IPR012336 (Thioredoxin-like fold)	
Niben101Scf05621g08001.1	sp|B8NKS1|MUB1_ASPFN	--*-	MYND-type zinc finger protein samB	IPR001810 (F-box domain), IPR002893 (Zinc finger, MYND-type), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03374g00006.1	AT4G16566.1	***-	histidine triad nucleotide-binding 4 LENGTH=146	IPR001310 (Histidine triad (HIT) protein), IPR011146 (HIT-like domain)	GO:0003824 (catalytic activity)
Niben101Scf03123g00015.1	AT5G40230.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=370	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf12765g01025.1	AT5G28150.1	***-	Plant protein of unknown function (DUF868) LENGTH=289	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf02054g02012.1	AT3G04350.1	***-	Plant protein of unknown function (DUF946) LENGTH=567	IPR009291 (Vacuolar protein sorting-associated protein 62)	
Niben101Scf03590g01002.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01958g03001.1	AT1G12030.1	***-	Protein of unknown function (DUF506) LENGTH=295	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf01994g02013.1			Unknown protein		
Niben101Scf02929g05004.1			Unknown protein		
Niben101Scf06578g02005.1	AT4G20860.1	****	FAD-binding Berberine family protein LENGTH=530	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04331g07007.1	ref|XP_009220373.1|	--*-	rib TSR1 [Gaeumannomyces graminis var. tritici R3-111a-1]		
Niben101Scf02854g04001.1			Unknown protein		
Niben101Scf03021g03022.1			Unknown protein		
Niben101Scf00761g04026.1	sp|Q9SIV5|C3H19_ARATH	*-*-	Zinc finger CCCH domain-containing protein 19		
Niben101Scf01623g18040.1	sp|B0S1I7|DTD_FINM2	***-	D-aminoacyl-tRNA deacylase	IPR003732 (D-tyrosyl-tRNA(Tyr) deacylase), IPR023509 (D-Tyr tRNAtyr deacylase-like domain)	GO:0005737 (cytoplasm), GO:0016788 (hydrolase activity, acting on ester bonds), GO:0019478 (D-amino acid catabolic process)
Niben101Scf09235g00013.1	sp|Q0G9W2|PSAA_DAUCA	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf01442g02007.1	AT3G48710.1	*-*-	DEK domain-containing chromatin associated protein LENGTH=462	IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal)	GO:0003677 (DNA binding)
Niben101Scf03099g01003.1	AT1G60060.1	***-	Serine/threonine-protein kinase WNK (With No Lysine)-related LENGTH=386	IPR025610 (Transcription factor MYC/MYB N-terminal)	
Niben101Scf01444g02009.1	sp|Q07761|RL23A_TOBAC	***-	60S ribosomal protein L23a	IPR005633 (Ribosomal protein L23/L25, N-terminal), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10869g00005.1	sp|Q9SCS3|PGML4_ARATH	*-*-	Phosphoglycerate mutase-like protein 4	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf02444g00034.1	sp|Q75B50|DED1_ASHGO	*-*-	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02731g05003.1			Unknown protein		
Niben101Scf01184g09009.1	gb|AAG31017.1|	*-*-	tospovirus resistance protein E [Solanum lycopersicum]		
Niben101Scf19653g00001.1	AT2G37420.1	*-**	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf09696g01071.1			Unknown protein		
Niben101Scf21574g00012.1	sp|Q15291|RBBP5_HUMAN	*-**	Retinoblastoma-binding protein 5	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03643g02038.1			Unknown protein		
Niben101Scf00705g06002.1	sp|B7H092|CLPX_ACIB3	****	ATP-dependent Clp protease ATP-binding subunit ClpX	IPR003959 (ATPase, AAA-type, core), IPR004487 (Clp protease, ATP-binding subunit ClpX), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf05721g00003.1	sp|Q55141|ILVH_SYNY3	*-**	Acetolactate synthase small subunit	IPR004789 (Acetolactate synthase, small subunit)	GO:0003984 (acetolactate synthase activity), GO:0008152 (metabolic process), GO:0009082 (branched-chain amino acid biosynthetic process), GO:0016597 (amino acid binding)
Niben101Scf04138g01012.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450), IPR001374 (Single-stranded nucleic acid binding R3H)	GO:0003676 (nucleic acid binding), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02983g02001.1	AT5G24580.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=319	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf02315g01007.1	AT2G36970.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=490	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01101g04010.1	ref|WP_030619022.1|	*-*-	glycosidase [Streptomyces achromogenes]	IPR013783 (Immunoglobulin-like fold), IPR013784 (Carbohydrate-binding-like fold), IPR015902 (Glycoside hydrolase, family 13)	GO:0003824 (catalytic activity), GO:0030246 (carbohydrate binding), GO:2001070 (starch binding)
Niben101Scf03644g03016.1	sp|Q14498|RBM39_HUMAN	*-**	RNA-binding protein 39	IPR001878 (Zinc finger, CCHC-type), IPR004087 (K Homology domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0008270 (zinc ion binding)
Niben101Ctg16113g00001.1			Unknown protein		
Niben101Scf07512g00017.1	AT5G63860.1	*-*-	Regulator of chromosome condensation (RCC1) family protein LENGTH=440	IPR008543 (Uncharacterised protein family Ycf2), IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf05880g01001.1	sp|D4B2G3|MAP2_ARTBC	****	Methionine aminopeptidase 2	IPR001714 (Peptidase M24, methionine aminopeptidase), IPR004545 (Proliferation-associated protein 1), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0004177 (aminopeptidase activity), GO:0006508 (proteolysis), GO:0008235 (metalloexopeptidase activity)
Niben101Scf01378g00002.1	sp|Q6R0E3|TRP5_ARATH	****	Telomere repeat-binding protein 5	IPR009057 (Homeodomain-like), IPR029071 (Ubiquitin-related domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03737g04003.1	AT2G43290.1	****	Calcium-binding EF-hand family protein LENGTH=215	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02072g02019.1	sp|Q4WP13|DED1_ASPFU	****	ATP-dependent RNA helicase ded1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf04069g00002.1	sp|Q93V93|PER44_ARATH	****	Peroxidase 44	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05587g00007.1	AT2G39210.1	***-	Major facilitator superfamily protein LENGTH=601	IPR010658 (Nodulin-like), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf33522g00004.1			Unknown protein		
Niben101Scf03444g00002.1	sp|Q04189|TAP1_ANTMA	--*-	Protein TAP1		
Niben101Scf01521g11001.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01253g01004.1	sp|P49103|RAB2A_MAIZE	--*-	Ras-related protein Rab-2-A	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf04090g02003.1	sp|P45735|PALY_VITVI	****	Phenylalanine ammonia-lyase	IPR001106 (Aromatic amino acid lyase), IPR023144 (Phenylalanine ammonia-lyase, shielding domain), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0006559 (L-phenylalanine catabolic process), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf05494g01011.1	sp|Q9LJK1|FUT11_ARATH	****	Glycoprotein 3-alpha-L-fucosyltransferase A	IPR001503 (Glycosyl transferase, family 10)	GO:0006486 (protein glycosylation), GO:0008417 (fucosyltransferase activity), GO:0016020 (membrane)
Niben101Scf01225g04014.1			Unknown protein		
Niben101Scf04854g01003.1	sp|Q2QQ96|CCA21_ORYSJ	****	Cyclin-A2-1	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Ctg09661g00001.1	gb|ABA96375.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR008590 (Protein of unknown function DUF872, transmembrane)	
Niben101Scf01745g04011.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02056g02015.1	ref|NP_001067775.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf10579g02004.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09808g00013.1	sp|O64407|AMYB_VIGUN	*-**	Beta-amylase	IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf02572g00015.1	sp|Q9M817|PTR6_ARATH	***-	Protein NRT1/ PTR FAMILY 1.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03804g01001.1	sp|Q21DT6|KATG_SACD2	*-**	Catalase-peroxidase	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01941g02021.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02227g04010.1	sp|Q8TEQ8|PIGO_HUMAN	*-*-	GPI ethanolamine phosphate transferase 3	IPR002591 (Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03256g01001.1	sp|P54274|TERF1_HUMAN	--**	Telomeric repeat-binding factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02280g01006.1	sp|P92961|PROT1_ARATH	***-	Proline transporter 1	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf06267g01005.1	AT4G36110.1	***-	SAUR-like auxin-responsive protein family LENGTH=104	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00119g02012.1	sp|O25989|YIDC_HELPY	*-**	Membrane protein insertase YidC	IPR001708 (Membrane insertase OXA1/ALB3/YidC), IPR028055 (Membrane insertase YidC/Oxa1, C-terminal)	GO:0016021 (integral component of membrane), GO:0051205 (protein insertion into membrane)
Niben101Scf10329g02006.1	emb|CDY01820.1|	***-	BnaC06g28600D [Brassica napus]	IPR021924 (Protein of unknown function DUF3537)	
Niben101Scf01609g00007.1	sp|O35427|RPC9_MOUSE	-***	DNA-directed RNA polymerase III subunit RPC9	IPR005574 (RNA polymerase II, Rpb4)	GO:0000166 (nucleotide binding), GO:0003824 (catalytic activity), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0044237 (cellular metabolic process)
Niben101Scf12639g01006.1	sp|Q8H157|PTR19_ARATH	*-*-	Protein NRT1/ PTR FAMILY 4.6	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03221g00016.1	gb|KEH32546.1|	--*-	S-adenosyl-L-methionine-dependent methyltransferase [Medicago truncatula]		
Niben101Scf04195g00011.1	AT1G51580.1	****	RNA-binding KH domain-containing protein LENGTH=621	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf04182g02003.1	sp|O48818|EXPA4_ARATH	***-	Expansin-A4	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf04860g03009.1	AT3G04020.1	***-	unknown protein; Has 26 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). LENGTH=304	IPR012349 (FMN-binding split barrel)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00259g01016.1	sp|P13586|ATC1_YEAST	****	Calcium-transporting ATPase 1	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0005388 (calcium-transporting ATPase activity), GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding), GO:0070588 (calcium ion transmembrane transport)
Niben101Scf06739g00006.1	AT5G20810.2	***-	SAUR-like auxin-responsive protein family LENGTH=190	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03548g02031.1	AT4G25080.3	****	magnesium-protoporphyrin IX methyltransferase LENGTH=312	IPR010251 (Magnesium-protoporphyrin IX methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0015995 (chlorophyll biosynthetic process), GO:0046406 (magnesium protoporphyrin IX methyltransferase activity)
Niben101Scf01269g13010.1			Unknown protein		
Niben101Scf00389g04008.1	dbj|BAD16379.1|	--*-	ATP synthase subunit-like protein [Oryza sativa Japonica Group]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf05669g02028.1	ref|NP_001048635.1|	***-	product [Oryza sativa Japonica Group]	IPR008479 (Protein of unknown function DUF760)	
Niben101Scf00870g00001.1	sp|Q9SHV1|GLR22_ARATH	****	Glutamate receptor 2.2	IPR017103 (Ionotropic glutamate receptor, plant), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf02340g05011.1	sp|Q13435|SF3B2_HUMAN	*-*-	Splicing factor 3B subunit 2	IPR006568 (PSP, proline-rich), IPR007180 (Domain of unknown function DUF382)	GO:0005634 (nucleus)
Niben101Scf04217g10004.1	sp|Q9SUH6|PP341_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05222g03002.1	AT3G09980.1	***-	Family of unknown function (DUF662) LENGTH=178	IPR007033 (Transcriptional activator, plants)	
Niben101Scf06825g02009.1	ref|WP_026193626.1|	***-	metallophosphoesterase [Teredinibacter turnerae]	IPR029052 (Metallo-dependent phosphatase-like)	
Niben101Scf03076g01018.1	AT2G35100.1	***-	Exostosin family protein LENGTH=447	IPR004263 (Exostosin-like)	
Niben101Scf00980g06001.1	gb|AES79247.2|	***-	DUF247 domain protein [Medicago truncatula]	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf14294g01005.1	sp|A2BYS9|RL16_PROM5	*-*-	50S ribosomal protein L16	IPR000114 (Ribosomal protein L16), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf03973g00012.1	AT5G03490.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=465	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01281g07014.1	sp|Q8L6J2|RPO2A_TOBAC	*-**	DNA-directed RNA polymerase 2A	IPR002092 (DNA-directed RNA polymerase, phage-type)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf03475g00009.1	sp|P50699|TLPH_ARATH	*-*-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf06005g00019.1	AT4G13690.1	***-	unknown protein; Has 37 Blast hits to 37 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). LENGTH=249		
Niben101Scf07811g00007.1	AT4G08570.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=150	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf03038g16002.1	gb|ABF96418.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf05923g03008.1	AT5G11730.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=386	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf00294g01014.1	sp|Q03199|IPIB_TOBAC	****	Proteinase inhibitor I-B	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding)
Niben101Scf02030g01002.1	sp|Q9M7J4|MFP1_TOBAC	***-	MAR-binding filament-like protein 1-1		
Niben101Ctg16054g00001.1	gb|AES70857.2|	*-*-	P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]		
Niben101Scf01579g01019.1	emb|CDX80212.1|	***-	BnaC09g35300D [Brassica napus]		
Niben101Scf06578g01003.1	sp|Q9XQR3|PSBH_PEA	*-**	Photosystem II reaction center protein H	IPR001056 (Photosystem II PsbH, phosphoprotein)	GO:0009523 (photosystem II), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0042301 (phosphate ion binding), GO:0050821 (protein stabilization)
Niben101Scf02510g03001.1	ref|XP_002523800.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF38526.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04481g00021.1			Unknown protein		
Niben101Scf02390g02005.1	gb|ACN57081.1|	-**-	At1g06530-like protein [Capsella grandiflora]		
Niben101Scf01628g00016.1	sp|Q43043|PME_PETIN	****	Pectinesterase	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf07034g06013.1	sp|O04719|P2C77_ARATH	***-	Protein phosphatase 2C 77	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf01277g00001.1	gb|KEH33297.1|	*-*-	YGL010w-like protein [Medicago truncatula]	IPR009305 (Protein of unknown function DUF962)	
Niben101Scf03528g01008.1	AT5G36930.2	*-*-	Disease resistance protein (TIR-NBS-LRR class) family LENGTH=1191	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf04993g06012.1	sp|Q9M0M5|SCL13_ARATH	*-*-	Scarecrow-like protein 13	IPR005202 (Transcription factor GRAS), IPR030005 (Scarecrow-like protein 13)	
Niben101Scf07187g00003.1	sp|Q9NZC3|GDE1_HUMAN	--**	Glycerophosphodiester phosphodiesterase 1	IPR004129 (Glycerophosphoryl diester phosphodiesterase)	GO:0006071 (glycerol metabolic process), GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity), GO:0008889 (glycerophosphodiester phosphodiesterase activity)
Niben101Scf00367g09001.1	sp|A8FCG5|MTNA_BACP2	*-*-	Methylthioribose-1-phosphate isomerase	IPR000649 (Initiation factor 2B-related)	GO:0044237 (cellular metabolic process)
Niben101Scf05706g00002.1	sp|Q1C4P3|APT_YERPA	****	Adenine phosphoribosyltransferase	IPR005764 (Adenine phosphoribosyl transferase), IPR029057 (Phosphoribosyltransferase-like)	GO:0003999 (adenine phosphoribosyltransferase activity), GO:0005737 (cytoplasm), GO:0006168 (adenine salvage), GO:0009116 (nucleoside metabolic process)
Niben101Scf05674g03002.1	sp|O80470|GDL38_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00568g04005.1	sp|Q589B8|RPOC2_SILLA	*-**	DNA-directed RNA polymerase subunit beta''	IPR007066 (RNA polymerase Rpb1, domain 3)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf10036g04008.1	gb|ADK13061.1|	--*-	conserved hypothetical protein 4 [Hevea brasiliensis]	IPR015157 (Translation machinery associated TMA7)	
Niben101Scf04871g08011.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00592g05005.1			Unknown protein		
Niben101Scf00536g01002.1	sp|A5UL75|RL5_METS3	***-	50S ribosomal protein L5	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf17353g00002.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf02531g01016.1	sp|Q79666|POL_HV1MV	--*-	Gag-Pol polyprotein	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf00108g01010.1	AT4G29660.1	***-	embryo defective 2752 LENGTH=103		
Niben101Scf04156g01026.1	gb|AET78878.1|	--*-	At2g46550-like protein [Arabidopsis halleri]		
Niben101Scf01376g03011.1	sp|Q8QFR4|MD2L2_XENLA	***-	Mitotic spindle assembly checkpoint protein MAD2B	IPR003511 (DNA-binding HORMA)	
Niben101Scf08167g05012.1	sp|Q9FZ96|PUP1_ARATH	*-*-	Purine permease 1	IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf12211g02011.1	AT1G80530.1	***-	Major facilitator superfamily protein LENGTH=561	IPR010658 (Nodulin-like), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf09989g01013.1	sp|F4HR03|TA11B_ARATH	--*-	Transcription initiation factor TFIID subunit 11b		
Niben101Scf00541g05005.1	AT1G21360.1	****	glycolipid transfer protein 2 LENGTH=223	IPR014830 (Glycolipid transfer protein domain)	GO:0005737 (cytoplasm), GO:0017089 (glycolipid transporter activity), GO:0046836 (glycolipid transport), GO:0051861 (glycolipid binding)
Niben101Scf01964g08018.1	sp|Q3E6Q1|PPR32_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01717g01007.1	sp|Q0WNR2|BH090_ARATH	*-*-	Transcription factor bHLH90	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf07680g02001.1	AT3G22880.1	****	DNA repair (Rad51) family protein LENGTH=344	IPR016467 (DNA recombination and repair protein, RecA-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003684 (damaged DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0006281 (DNA repair), GO:0008094 (DNA-dependent ATPase activity)
Niben101Scf01718g02009.1	sp|P48261|TRPG_CYAPA	*-*-	Anthranilate synthase component 2	IPR029062 (Class I glutamine amidotransferase-like)	
Niben101Scf00177g01002.1	AT3G55050.1	*-**	Protein phosphatase 2C family protein LENGTH=384	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf00083g02013.1	ref|WP_008236070.1|	****	Iron-sulfur cluster assembly protein SufB [Richelia intracellularis] emb|CCH68427.1| Iron-sulfur cluster assembly protein SufB [Richelia intracellularis HH01]	IPR000825 (SUF system FeS cluster assembly, SufBD)	GO:0016226 (iron-sulfur cluster assembly)
Niben101Scf02145g07026.1	emb|CDY12195.1|	***-	BnaC04g12250D [Brassica napus]	IPR010471 (Protein of unknown function DUF1068)	
Niben101Scf01787g00048.1	ref|XP_002536610.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF25773.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01063g02001.1	ref|XP_007029644.1|	***-	Plasma membrane isoform 4 [Theobroma cacao] gb|EOY10146.1| Plasma membrane isoform 4 [Theobroma cacao]	IPR011528 (Nuclease-related domain, NERD)	
Niben101Scf03708g01001.1	AT1G55040.1	*-**	zinc finger (Ran-binding) family protein LENGTH=849	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf07036g02017.1	AT2G07820.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=88		
Niben101Scf06504g01026.1	AT1G64500.1	***-	Glutaredoxin family protein LENGTH=368	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00317g06016.1	sp|Q4WD95|SEC16_ASPFU	*-**	COPII coat assembly protein sec16	IPR024340 (Sec16, central conserved domain), IPR024880 (COPII coat assembly protein, Sec16)	GO:0048208 (COPII vesicle coating)
Niben101Scf02864g01014.1	sp|Q9U794|PSB1_TRYBB	****	Proteasome subunit beta type-1	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf19266g01002.1	sp|Q38741|SBP1_ANTMA	****	Squamosa promoter-binding protein 1	IPR017238 (Squamosa promoter-binding protein)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf05797g00002.1	sp|Q7XA72|AB21G_ARATH	*-*-	ABC transporter G family member 21		
Niben101Scf10188g01003.1	sp|F4JKI3|DGK6_ARATH	*-**	Diacylglycerol kinase 6	IPR000756 (Diacylglycerol kinase, accessory domain)	GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway)
Niben101Scf02312g04001.1	sp|A3KQ55|MEPCE_DANRE	*-*-	7SK snRNA methylphosphate capping enzyme	IPR010675 (Bicoid-interacting 3), IPR024160 (Bin3-type S-adenosyl-L-methionine binding domain), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf01406g01001.1	sp|Q9SH93|IPCS2_ARATH	***-	Phosphatidylinositol:ceramide inositolphosphotransferase 2	IPR025749 (Sphingomyelin synthase-like domain)	
Niben101Scf02372g00021.1	AT1G74380.1	*-*-	xyloglucan xylosyltransferase 5 LENGTH=457		
Niben101Scf01383g03011.1			Unknown protein		
Niben101Scf06556g07001.1	sp|Q8CT13|ODP2_STAES	***-	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	IPR015761 (Lipoamide Acyltransferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf15614g00005.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf14977g00004.1	ref|XP_007016926.1|	***-	F2P16.20 protein, putative isoform 1 [Theobroma cacao] gb|EOY34545.1| F2P16.20 protein, putative isoform 1 [Theobroma cacao]	IPR007308 (Protein of unknown function DUF408)	
Niben101Scf09401g00011.1			Unknown protein		
Niben101Scf09116g00008.1	sp|Q940U6|FLU_ARATH	*-*-	Protein FLUORESCENT IN BLUE LIGHT, chloroplastic		
Niben101Scf04551g02003.1	sp|A2VEA3|ARI1_BOVIN	--*-	E3 ubiquitin-protein ligase ARIH1	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf04276g02013.1	sp|B2VG72|GPPA_ERWT9	***-	Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase	IPR003695 (Ppx/GppA phosphatase)	
Niben101Scf04950g07004.1	sp|P49039|SUS2_SOLTU	****	Sucrose synthase	IPR000368 (Sucrose synthase)	GO:0005985 (sucrose metabolic process)
Niben101Scf02846g00001.1	sp|Q9M1S9|CDT1B_ARATH	*-*-	CDT1-like protein b	IPR014939 (CDT1 Geminin-binding domain-like)	
Niben101Scf03643g02037.1	ref|YP_005090400.1|	*-*-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf00773g04005.1			Unknown protein		
Niben101Scf03046g02020.1	ref|XP_007010078.1|	*-*-	F-box and Leucine Rich Repeat domains containing protein, putative isoform 3, partial [Theobroma cacao] gb|EOY18888.1| F-box and Leucine Rich Repeat domains containing protein, putative isoform 3, partial [Theobroma cacao]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf00296g01015.1			Unknown protein		
Niben101Scf01789g00009.1	sp|Q9LE73|NUDT4_ARATH	*-**	Nudix hydrolase 4	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf00724g00003.1	dbj|BAB01786.1|	*-*-	transposon protein-like [Arabidopsis thaliana]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf03572g04014.1	ref|XP_002527953.1|	****	nucleotide binding protein, putative [Ricinus communis] gb|EEF34442.1| nucleotide binding protein, putative [Ricinus communis]	IPR009917 (Steroid receptor RNA activator-protein/coat protein complex II, Sec31), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf11844g02013.1	sp|Q8L5U0|CSN4_ARATH	***-	COP9 signalosome complex subunit 4	IPR000717 (Proteasome component (PCI) domain)	GO:0005515 (protein binding)
Niben101Scf00103g04008.1	sp|O61125|STK4_DICDI	*-**	Serine/threonine-protein kinase 4 homolog A	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01192g02002.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY), IPR018872 (Zn-cluster domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00542g07012.1	sp|O42993|FKBP_SCHPO	*-*-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR011990 (Tetratricopeptide-like helical domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0005515 (protein binding), GO:0006457 (protein folding)
Niben101Scf11124g01047.1	sp|Q9SI78|PPR93_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02949g14009.1	sp|P42791|RL182_ARATH	***-	60S ribosomal protein L18-2	IPR000039 (Ribosomal protein L18e), IPR021131 (Ribosomal protein L18e/L15P)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05483g04002.1	AT1G05575.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=89		
Niben101Scf02571g03003.1	AT1G74780.1	*-*-	Nodulin-like / Major Facilitator Superfamily protein LENGTH=533	IPR010658 (Nodulin-like)	
Niben101Scf03497g11007.1			Unknown protein		
Niben101Scf02115g05020.1	sp|Q92994|TF3B_HUMAN	--*-	Transcription factor IIIB 90 kDa subunit	IPR011665 (Brf1, TBP-binding domain)	
Niben101Scf04024g02028.1	AT2G01120.2	****	origin recognition complex subunit 4 LENGTH=424	IPR003959 (ATPase, AAA-type, core), IPR016527 (Origin recognition complex, subunit 4), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000808 (origin recognition complex), GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006260 (DNA replication)
Niben101Scf07681g01003.1	sp|Q9FQ03|XRN3_ARATH	*-*-	5'-3' exoribonuclease 3	IPR027073 (5'-3' exoribonuclease)	
Niben101Scf02595g03006.1	gb|AES73124.2|	***-	localization and RNA pol II promoter Fmp27 domain protein [Medicago truncatula]	IPR019441 (FMP27, GFWDK domain), IPR019443 (FMP27,  C-terminal)	
Niben101Scf05425g00013.1	gb|AHA47124.1|	*-*-	NADH dehydrogenase subunit 5 (mitochondrion) [Amborella trichopoda]		
Niben101Scf02344g06024.1	AT1G13810.1	***-	Restriction endonuclease, type II-like superfamily protein LENGTH=303	IPR011335 (Restriction endonuclease  type II-like)	GO:0003677 (DNA binding), GO:0004518 (nuclease activity)
Niben101Scf00895g00004.1	sp|Q8TES7|FBF1_HUMAN	--**	Fas-binding factor 1	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf15645g01002.1	sp|Q9Y227|ENTP4_HUMAN	*-*-	Ectonucleoside triphosphate diphosphohydrolase 4	IPR000407 (Nucleoside phosphatase GDA1/CD39)	GO:0016787 (hydrolase activity)
Niben101Scf02468g05008.1	sp|Q9LRR2|TPS17_ARATH	*-**	Terpenoid synthase 17	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf02190g01013.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01626g03015.1	sp|Q8YUA5|DNAJ_NOSS1	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf00732g01008.1			Unknown protein		
Niben101Scf04741g01005.1	emb|CDX98312.1|	--*-	BnaC06g16730D [Brassica napus]		
Niben101Scf15170g00010.1	emb|CDY65979.1|	--*-	BnaCnng49210D [Brassica napus]		
Niben101Scf07511g03007.1	ref|XP_007047765.1|	*-*-	Transcription initiation factor TFIID subunit 8, putative isoform 3 [Theobroma cacao] gb|EOX91922.1| Transcription initiation factor TFIID subunit 8, putative isoform 3 [Theobroma cacao]		
Niben101Scf00715g09005.1	ref|XP_007023443.1|	***-	Low PSII Accumulation 3 isoform 3, partial [Theobroma cacao] gb|EOY26065.1| Low PSII Accumulation 3 isoform 3, partial [Theobroma cacao]	IPR018962 (Domain of unknown function DUF1995)	
Niben101Scf07163g02003.1	AT5G55530.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=405	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf14012g01002.1	AT4G33480.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;	IPR022203 (Protein of unknown function DUF3727)	
Niben101Scf00168g09005.1			Unknown protein		
Niben101Scf00819g00002.1	sp|Q9SIT5|CHX15_ARATH	****	Cation/H(+) antiporter 15	IPR006153 (Cation/H+ exchanger), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf10999g00004.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00621g12010.1	sp|Q29RI6|CAB39_BOVIN	****	Calcium-binding protein 39	IPR013878 (Mo25-like)	GO:0005488 (binding)
Niben101Scf03393g02008.1	sp|Q67XQ0|Y4424_ARATH	*-*-	DUF21 domain-containing protein	IPR002550 (Domain of unknown function DUF21)	
Niben101Scf06233g01012.1	sp|P17859|AMYA_VIGMU	*-**	Alpha-amylase	IPR012850 (Alpha-amylase, C-terminal beta-sheet), IPR013780 (Glycosyl hydrolase, family 13, all-beta), IPR015902 (Glycoside hydrolase, family 13), IPR017853 (Glycoside hydrolase superfamily)	GO:0003824 (catalytic activity), GO:0004556 (alpha-amylase activity), GO:0005509 (calcium ion binding), GO:0005975 (carbohydrate metabolic process), GO:0043169 (cation binding)
Niben101Scf03755g02007.1	AT2G25850.2	****	poly(A) polymerase 2 LENGTH=800	IPR014492 (Poly(A) polymerase)	GO:0003723 (RNA binding), GO:0004652 (polynucleotide adenylyltransferase activity), GO:0005634 (nucleus), GO:0016779 (nucleotidyltransferase activity), GO:0031123 (RNA 3'-end processing), GO:0043631 (RNA polyadenylation)
Niben101Scf03584g01006.1	sp|Q9M3V8|RS6_ASPOF	***-	40S ribosomal protein S6	IPR001377 (Ribosomal protein S6e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03236g02005.1	sp|Q9BBR5|PSBE_LOTJA	***-	Cytochrome b559 subunit alpha	IPR006217 (Photosystem II cytochrome b559, alpha subunit)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf14634g01002.1	sp|Q9M1E2|PTR37_ARATH	*-*-	Protein NRT1/ PTR FAMILY 2.7	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf06509g01006.1	AT3G16490.1	***-	IQ-domain 26 LENGTH=389	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf02318g06019.1	sp|A6QLH5|ERI3_BOVIN	*-*-	ERI1 exoribonuclease 3	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf01466g01005.1	AT5G10460.1	***-	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=306		
Niben101Scf12738g00003.1	sp|Q60AU6|ERPA2_METCA	*-**	Iron-sulfur cluster insertion protein ErpA 2	IPR000361 (FeS cluster biogenesis), IPR016092 (FeS cluster insertion protein)	GO:0005198 (structural molecule activity), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf05634g02005.1	sp|Q949M2|FABG4_BRANA	*-**	3-oxoacyl-[acyl-carrier-protein] reductase 4	IPR002198 (Short-chain dehydrogenase/reductase SDR), IPR003560 (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase)	GO:0008152 (metabolic process), GO:0008667 (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0019290 (siderophore biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf01276g02008.1	sp|O80959|PLP6_ARATH	***-	Patatin-like protein 6	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf00751g04013.1	sp|A4QP78|CNO11_DANRE	***-	CCR4-NOT transcription complex subunit 11	IPR019312 (Protein of unknown function DUF2363)	
Niben101Scf06837g01004.1	AT3G19440.1	****	Pseudouridine synthase family protein LENGTH=477	IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf02840g01015.1	sp|Q9LXF3|CASP5_ARATH	***-	Casparian strip membrane protein 5	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf04876g00001.1			Unknown protein		
Niben101Scf05618g04003.1	sp|Q3TX08|TRM1_MOUSE	****	tRNA (guanine(26)-N(2))-dimethyltransferase	IPR002905 (tRNA methyltransferase, Trm1), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0004809 (tRNA (guanine-N2-)-methyltransferase activity), GO:0008033 (tRNA processing)
Niben101Scf00063g14005.1	sp|Q3EBY8|FB111_ARATH	***-	F-box protein	IPR005174 (Protein of unknown function DUF295)	
Niben101Scf04563g01013.1	gb|ACE79403.1|	*-*-	NBS-coding resistance gene analog [Nicotiana tabacum]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01214g02018.1	gb|AAV88065.1|	--*-	leucine-rich repeat protein [Ipomoea batatas]		
Niben101Scf05809g01004.1	sp|Q84WP6|NAC43_ARATH	*-*-	NAC domain-containing protein 43	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00546g08002.1	sp|Q94EJ2|HDA8_ARATH	***-	Histone deacetylase 8	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	
Niben101Scf03766g02003.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00074g02031.1	sp|Q8GYF5|WAKLR_ARATH	--*-	Wall-associated receptor kinase-like 21	IPR013320 (Concanavalin A-like lectin/glucanase domain)	
Niben101Scf12245g00002.1	sp|Q84TE6|NAC22_ARATH	***-	NAC domain-containing protein 21/22	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg15784g00002.1	AT3G21300.1	****	RNA methyltransferase family protein LENGTH=554	IPR010280 ((Uracil-5)-methyltransferase family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006396 (RNA processing), GO:0008173 (RNA methyltransferase activity)
Niben101Scf02797g01007.1	AT4G12700.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=561	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf10940g04024.1	sp|Q8X132|H2A_NEUCR	***-	Histone H2A	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf03283g04013.1	AT3G08550.1	***-	elongation defective 1 protein / ELD1 protein LENGTH=533		
Niben101Scf00410g01011.1	AT4G10955.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=350	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf09172g02039.1	ref|XP_003597021.1|	****	APO protein [Medicago truncatula] gb|AES67272.1| APO RNA-binding protein [Medicago truncatula]	IPR023342 (APO domain)	GO:0003723 (RNA binding)
Niben101Scf02445g00011.1	sp|Q4P827|EAF3_USTMA	***-	Chromatin modification-related protein EAF3	IPR008676 (MRG), IPR016197 (Chromo domain-like), IPR025995 (RNA binding activity-knot of a chromodomain), IPR026541 (MRG domain)	GO:0005634 (nucleus)
Niben101Scf38514g00003.1	sp|F4JLS1|LDL3_ARATH	*-*-	Lysine-specific histone demethylase 1 homolog 3		
Niben101Scf07508g03003.1	sp|Q9USR1|TXL1_SCHPO	*-*-	Thioredoxin-like protein 1	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02034g02001.1	sp|Q889C2|CLPB_PSESM	*-*-	Chaperone protein ClpB	IPR003959 (ATPase, AAA-type, core), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf14805g04014.1	sp|Q9FWA6|PP207_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00058g09015.1	AT1G05380.1	*-**	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein LENGTH=1138	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02003g01003.1	sp|P0C5C9|REHYA_ORYSJ	*-*-	1-Cys peroxiredoxin A		
Niben101Scf06394g01008.1	sp|Q8GXM8|MATE7_ARATH	***-	MATE efflux family protein 7	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00870g05003.1	sp|Q6K7E6|ERF1_ORYSJ	****	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01326g11001.1	emb|CDY45142.1|	***-	BnaA09g14500D [Brassica napus]	IPR007679 (Protein of unknown function DUF569), IPR008999 (Actin cross-linking)	
Niben101Scf13474g00001.1	sp|F4I507|MYO3_ARATH	--*-	Myosin-3		
Niben101Scf00113g05007.1			Unknown protein		
Niben101Scf05522g00002.1	AT4G27280.1	****	Calcium-binding EF-hand family protein LENGTH=130	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf36578g00001.1	sp|P09144|PSAB_CHLRE	--**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00938g01008.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf02356g00010.1	sp|A6LD25|FTSH_PARD8	--**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02045g00001.1			Unknown protein		
Niben101Scf01506g04004.1	tpg|DAA58232.1|	--*-	TPA: hypothetical protein ZEAMMB73_807538 [Zea mays]		
Niben101Scf00285g07002.1	sp|Q9M5P8|SNAA_SOLTU	--*-	Alpha-soluble NSF attachment protein		
Niben101Scf01853g01003.1	gb|ABE66195.1|	*-*-	zinc finger protein-like protein [Arabidopsis thaliana]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf02798g07007.1	emb|CDY20509.1|	--*-	BnaC04g05350D [Brassica napus]		
Niben101Scf00051g03009.1	AT4G21940.2	*-**	calcium-dependent protein kinase 15 LENGTH=561	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf11830g00011.1	gb|AHA85665.1|	*-*-	Ycf1, partial (chloroplast) [Solanum corymbosum]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf13916g00009.1	sp|Q9BTD8|RBM42_HUMAN	*-**	RNA-binding protein 42	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02792g03014.1	sp|Q9SE45|ANXD3_ARATH	***-	Annexin D3	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf02929g01015.1			Unknown protein		
Niben101Scf07593g02003.1	sp|Q9FYQ8|TMN11_ARATH	*-*-	Transmembrane 9 superfamily member 11	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf01305g01002.1	gb|AAM52341.1|	--*-	fertility restorer-like protein [Petunia x hybrida]		
Niben101Scf02831g07010.1			Unknown protein	IPR007930 (Protein of unknown function DUF724)	
Niben101Scf02307g00010.1	sp|P15115|G3P_BACCO	*-*-	Glyceraldehyde-3-phosphate dehydrogenase	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf03651g00004.1	sp|Q03773|E13A_SOYBN	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05469g01024.1	sp|P25792|CYSP_SCHMA	*-**	Cathepsin B-like cysteine proteinase	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf03236g00006.1	sp|O64722|ZHD3_ARATH	*-*-	Zinc-finger homeodomain protein 3	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain)	
Niben101Scf07590g07003.1	sp|P06280|AGAL_HUMAN	*-*-	Alpha-galactosidase A	IPR000772 (Ricin B lectin domain), IPR002241 (Glycoside hydrolase, family 27), IPR013780 (Glycosyl hydrolase, family 13, all-beta)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02302g01009.1			Unknown protein		
Niben101Scf00152g14002.1	AT1G75620.1	***-	glyoxal oxidase-related protein LENGTH=547	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR014756 (Immunoglobulin E-set), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf06684g02016.1	sp|Q41238|LOX16_SOLTU	***-	Linoleate 9S-lipoxygenase 6	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01534g01002.1	sp|Q5RAJ5|STK36_PONAB	*-**	Serine/threonine-protein kinase 36	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04040g01016.1	AT2G24500.1	*-*-	Zinc finger protein 622 LENGTH=395		
Niben101Scf19458g00007.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf02526g00002.1	sp|O23970|GPX1_HELAN	****	Glutathione peroxidase 1	IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029759 (Glutathione peroxidase active site), IPR029760 (Glutathione peroxidase conserved site)	GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process)
Niben101Scf00117g00007.1	sp|B9MKI0|RL4_CALBD	***-	50S ribosomal protein L4	IPR002136 (Ribosomal protein L4/L1e), IPR023574 (Ribosomal protein L4 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00747g12004.1	sp|O64982|PRS7_PRUPE	*-*-	26S protease regulatory subunit 7		
Niben101Scf01513g00017.1	sp|F4JRF4|MUTYH_ARATH	****	A/G-specific adenine DNA glycosylase	IPR011257 (DNA glycosylase), IPR015797 (NUDIX hydrolase domain-like), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0016787 (hydrolase activity)
Niben101Scf17830g00004.1			Unknown protein	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf01154g19017.1	sp|Q9V6G5|TAZ_DROME	***-	Tafazzin homolog	IPR000872 (Tafazzin)	GO:0006644 (phospholipid metabolic process), GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf02494g01018.1	AT5G62350.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=202	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf11414g00007.1	sp|Q9U539|OCT1_CAEEL	****	Organic cation transporter 1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00146g02009.1	sp|B4MFM2|WDR48_DROVI	*-*-	WD repeat-containing protein 48 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf07661g00002.1	AT3G26320.1	***-	cytochrome P450, family 71, subfamily B, polypeptide 36 LENGTH=500	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf12159g03003.1	sp|O24172|ALL6_OLEEU	***-	Major pollen allergen Ole e 6	IPR015333 (Pollen allergen ole e 6)	
Niben101Scf04699g01011.1	sp|Q9LT79|PUB25_ARATH	*-*-	U-box domain-containing protein 25	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0016567 (protein ubiquitination)
Niben101Scf02915g01001.1	sp|Q54QK1|FA96B_DICDI	***-	MIP18 family protein FAM96B	IPR002744 (Domain of unknown function DUF59)	
Niben101Scf01664g00015.1	AT2G17820.1	****	histidine kinase 1 LENGTH=1207	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04547g03013.1	AT1G23480.1	*-*-	cellulose synthase-like A3 LENGTH=556		
Niben101Scf02210g09008.1	sp|Q14GX0|DNAJ_FRAT1	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR016024 (Armadillo-type fold), IPR025640 (Domain of unknown function DUF4339)	GO:0005488 (binding)
Niben101Scf09401g01007.1	tpg|DAA57049.1|	***-	TPA: hypothetical protein ZEAMMB73_793304 [Zea mays]		
Niben101Scf05094g00009.1	sp|F4K295|ROGF5_ARATH	****	Rop guanine nucleotide exchange factor 5	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf01826g03012.1	ref|XP_002522368.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF40052.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf02864g07005.1	sp|Q9BX46|RBM24_HUMAN	--**	RNA-binding protein 24	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04099g06006.1	sp|Q8VZN1|OFP5_ARATH	--*-	Transcription repressor OFP5	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf09987g02003.1	AT1G22400.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03573g00008.1	sp|Q769F9|TMEDA_DICDI	***-	Transmembrane emp24 domain-containing protein A	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf01219g04013.1	sp|Q9S7P5|SPL12_ARATH	--**	Squamosa promoter-binding-like protein 12	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf08478g00012.1	ref|XP_007034250.1|	***-	DNA-directed RNA polymerase subunit beta' [Theobroma cacao] gb|EOY05176.1| DNA-directed RNA polymerase subunit beta' [Theobroma cacao]		
Niben101Scf02319g06009.1	ref|WP_019540397.1|	****	GTP-binding protein YsxC [Proteiniphilum acetatigenes]	IPR006073 (GTP binding domain), IPR019987 (GTP-binding protein, ribosome biogenesis, YsxC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000917 (barrier septum assembly), GO:0005525 (GTP binding)
Niben101Scf01826g00006.1	AT5G08250.1	*-*-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11349g00001.1	sp|O24160|TGA21_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00887g04025.1	sp|Q9LUC2|PP231_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07766g00018.1	AT2G26920.1	***-	Ubiquitin-associated/translation elongation factor EF1B protein LENGTH=646	IPR009060 (UBA-like), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote)	GO:0005515 (protein binding)
Niben101Scf12320g02001.1	AT5G19420.2	***-	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain LENGTH=1139	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR011993 (Pleckstrin homology-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013591 (Brevis radix (BRX) domain), IPR027988 (Transcription factor  BREVIS RADIX, N-terminal domain)	GO:0046872 (metal ion binding)
Niben101Scf00332g09009.1	sp|Q9XGI7|NAS_SOLLC	****	Nicotianamine synthase	IPR004298 (Nicotianamine synthase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0030410 (nicotianamine synthase activity), GO:0030418 (nicotianamine biosynthetic process)
Niben101Scf06611g00003.1	ref|WP_029028059.1|	****	NAD-dependent dehydratase [Salinispora arenicola]	IPR016040 (NAD(P)-binding domain)	GO:0003854 (3-beta-hydroxy-delta5-steroid dehydrogenase activity), GO:0006694 (steroid biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf03929g01006.1	ref|XP_002525615.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF36733.1| conserved hypothetical protein [Ricinus communis]	IPR018392 (LysM domain)	
Niben101Scf05411g02022.1	sp|A7GT07|DNAJ_BACCN	--*-	Chaperone protein DnaJ	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf01696g06053.1	AT5G28830.1	***-	calcium-binding EF hand family protein LENGTH=324		
Niben101Scf04198g02005.1			Unknown protein		
Niben101Scf02463g01011.1	ref|XP_007021390.1|	***-	Silencing defective 5, putative isoform 1 [Theobroma cacao] gb|EOY12915.1| Silencing defective 5, putative isoform 1 [Theobroma cacao]	IPR013899 (Domain of unknown function DUF1771)	
Niben101Scf02407g00011.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03929g01007.1	sp|O64791|SY124_ARATH	***-	Syntaxin-124	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf08936g09009.1	sp|Q99KK1|REEP3_MOUSE	*-*-	Receptor expression-enhancing protein 3	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf03942g03002.1	AT4G12540.1	***-	unknown protein; Has 29 Blast hits to 26 proteins in 11 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=461		
Niben101Scf09234g00016.1	ref|WP_030216512.1|	--*-	methyltransferase [Streptomyces sp. NRRL WC-3626]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00465g02003.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf17394g00001.1	sp|Q42430|ZFP1_WHEAT	***-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Ctg15401g00004.1	sp|Q41001|BCP_PEA	*-*-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf02947g03005.1	sp|Q8LEZ8|AP1S1_ARATH	***-	AP-1 complex subunit sigma-1	IPR000804 (Clathrin adaptor complex, small chain), IPR016635 (Adaptor protein complex, sigma subunit)	GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf07207g00002.1	sp|Q84NC5|MAD25_ORYSJ	***-	MADS-box transcription factor 25	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf04654g02005.1	sp|Q8BT14|CNOT4_MOUSE	*-*-	CCR4-NOT transcription complex subunit 4	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01172g00002.1	ref|NP_001233978.1|	*-*-	extensin-like protein Dif54 precursor [Solanum lycopersicum] emb|CAA67814.1| extensin-like protein Dif54 [Solanum lycopersicum]		
Niben101Scf01826g03013.1	dbj|BAB09401.1|	****	transmembrane transport protein-like [Arabidopsis thaliana]	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0005345 (purine nucleobase transmembrane transporter activity), GO:0006810 (transport), GO:0006863 (purine nucleobase transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02232g06016.1			Unknown protein		
Niben101Scf17872g00009.1	sp|Q9S7R3|LSH10_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	IPR006936 (ALOG domain)	
Niben101Scf02210g09007.1	ref|XP_002515568.1|	*-**	heat shock protein binding protein, putative [Ricinus communis] gb|EEF47017.1| heat shock protein binding protein, putative [Ricinus communis]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf07231g04003.1	sp|Q6Z4N3|TRL11_ORYSJ	--*-	Thioredoxin-like 1-1, chloroplastic		
Niben101Scf04714g03015.1	sp|O22151|GOS12_ARATH	****	Golgi SNAP receptor complex member 1-2	IPR023601 (Golgi SNAP receptor complex, subunit 1)	GO:0000139 (Golgi membrane), GO:0005801 (cis-Golgi network), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0016021 (integral component of membrane)
Niben101Scf01146g13004.1	sp|Q8DRT7|ILVD_STRMU	*-*-	Dihydroxy-acid dehydratase	IPR000581 (Dihydroxy-acid/6-phosphogluconate dehydratase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03026g03006.1	sp|O42993|FKBP_SCHPO	***-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf01109g04021.1	AT2G25180.1	*-*-	response regulator 12 LENGTH=596	IPR010402 (CCT domain), IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system), GO:0005515 (protein binding)
Niben101Scf18348g00014.1	AT5G35730.1	***-	EXS (ERD1/XPR1/SYG1) family protein LENGTH=457	IPR004342 (EXS, C-terminal), IPR018247 (EF-Hand 1, calcium-binding site)	GO:0016021 (integral component of membrane)
Niben101Scf04764g10045.1	sp|Q57604|MJK1_METJA	--*-	Potassium channel protein 1	IPR013099 (Two pore domain potassium channel domain), IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf03194g00009.1	sp|Q8K157|GALM_MOUSE	***-	Aldose 1-epimerase	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0019318 (hexose metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf00414g07005.1	sp|P49351|FPPS1_LUPAL	***-	Farnesyl pyrophosphate synthase 1	IPR000092 (Polyprenyl synthetase)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Ctg15836g00002.1	sp|Q9FMK7|BT1_ARATH	***-	BTB/POZ and TAZ domain-containing protein 1	IPR000197 (Zinc finger, TAZ-type), IPR011333 (BTB/POZ fold)	GO:0003712 (transcription cofactor activity), GO:0004402 (histone acetyltransferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf03790g00009.1	AT4G30920.1	****	Cytosol aminopeptidase family protein LENGTH=583	IPR011356 (Leucine aminopeptidase/peptidase B)	GO:0004177 (aminopeptidase activity), GO:0005622 (intracellular), GO:0005737 (cytoplasm), GO:0006508 (proteolysis), GO:0008235 (metalloexopeptidase activity), GO:0019538 (protein metabolic process), GO:0030145 (manganese ion binding)
Niben101Scf15995g04005.1	sp|Q7XTQ5|MEX1_ORYSJ	***-	Maltose excess protein 1-like, chloroplastic		
Niben101Scf04071g06014.1	sp|Q8RXK2|SDN3_ARATH	*-*-	Small RNA degrading nuclease 3		
Niben101Scf01956g05003.1	sp|P42736|RAP23_ARATH	-**-	Ethylene-responsive transcription factor RAP2-3		
Niben101Scf03396g04011.1	AT1G55360.1	***-	Protein of Unknown Function (DUF239) LENGTH=422	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf00934g02005.1	sp|Q9ZT66|E134_MAIZE	***-	Endo-1,3;1,4-beta-D-glucanase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf06190g06004.1	sp|Q9LDE4|ERF83_ARATH	*-**	Ethylene-responsive transcription factor 7	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04424g01001.1	sp|Q3B8D5|KATL2_XENLA	*-**	Katanin p60 ATPase-containing subunit A-like 2	IPR003959 (ATPase, AAA-type, core), IPR015415 (Vps4 oligomerisation, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028596 (Katanin p60 subunit A1)	GO:0005524 (ATP binding), GO:0008017 (microtubule binding), GO:0008568 (microtubule-severing ATPase activity), GO:0051013 (microtubule severing)
Niben101Scf07590g07002.1	sp|Q7N3U6|SUFE_PHOLL	***-	Cysteine desulfuration protein SufE	IPR003808 (Fe-S metabolism associated domain, SufE-like)	
Niben101Scf01734g01049.1	sp|P31562|ACCD_CUSRE	*-**	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	IPR000438 (Acetyl-CoA carboxylase carboxyl transferase, beta subunit), IPR029045 (ClpP/crotonase-like domain)	GO:0003989 (acetyl-CoA carboxylase activity), GO:0006633 (fatty acid biosynthetic process), GO:0009317 (acetyl-CoA carboxylase complex), GO:0016874 (ligase activity)
Niben101Scf02558g00028.1	AT4G01870.1	***-	tolB protein-related LENGTH=652	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf00078g02007.1	ref|WP_015140241.1|	*-*-	GUN4 protein [N [Nostoc sp. PCC 7524]	IPR008629 (GUN4-like)	
Niben101Scf06618g00008.1	AT2G25910.2	****	3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein LENGTH=342	IPR004088 (K Homology domain, type 1), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf11737g00029.1	sp|Q9C9K2|CP123_ARATH	***-	Calvin cycle protein CP12-3, chloroplastic	IPR003823 (Domain of unknown function CP12)	
Niben101Scf09223g02004.1	AT3G32047.1	***-	Cytochrome P450 superfamily protein LENGTH=502	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02029g00012.1	emb|CDX76853.1|	***-	BnaC08g34390D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf09355g03002.1	sp|Q8VY39|CX5C2_HELAN	***-	Cytochrome c oxidase subunit 5C-2		
Niben101Scf05610g00009.1	sp|Q9UUC8|RM51_SCHPO	-**-	54S ribosomal protein L51, mitochondrial	IPR007741 (Ribosomal protein/NADH dehydrogenase domain), IPR012336 (Thioredoxin-like fold)	
Niben101Scf02279g08003.1	AT1G69780.1	***-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05387g09003.1	sp|Q5AAW3|DHH1_CANAL	*-*-	ATP-dependent RNA helicase DHH1	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00388g03006.1	sp|Q8GWK2|AP2L4_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf16840g00004.1	ref|XP_007018038.1|	*-*-	Homeodomain superfamily protein isoform 3 [Theobroma cacao] gb|EOY15263.1| Homeodomain superfamily protein isoform 3 [Theobroma cacao]		
Niben101Scf01459g01007.1	AT1G58030.1	****	cationic amino acid transporter 2 LENGTH=635	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf09301g00003.1	sp|B9L3S8|FTSH2_THERP	*-**	ATP-dependent zinc metalloprotease FtsH 2	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01435g02002.1	sp|Q84WP6|NAC43_ARATH	***-	NAC domain-containing protein 43	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00581g01016.1	sp|Q58DW6|RAB25_BOVIN	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf03755g01005.1	gb|AET01484.2|	***-	Avr9/Cf-9 rapidly elicited protein [Medicago truncatula]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf01689g08015.1	sp|O54748|STK3_RAT	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06684g03012.1	sp|Q2HBI0|TOF1_CHAGB	*-*-	Topoisomerase 1-associated factor 1	IPR006906 (Timeless protein), IPR007725 (Timeless C-terminal)	
Niben101Scf03852g02002.1	sp|P40229|CSK2C_ARATH	****	Casein kinase II subunit beta'	IPR000704 (Casein kinase II, regulatory subunit)	GO:0005956 (protein kinase CK2 complex), GO:0019887 (protein kinase regulator activity)
Niben101Scf01681g16010.1	ref|XP_007041184.1|	*-**	Fatty acid hydroxylase superfamily [Theobroma cacao] gb|EOX97015.1| Fatty acid hydroxylase superfamily [Theobroma cacao]	IPR006694 (Fatty acid hydroxylase), IPR021940 (Uncharacterised domain Wax2, C-terminal)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf17565g00005.1	sp|Q4R3S3|ANKR7_MACFA	--*-	Ankyrin repeat domain-containing protein 7	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf08280g02001.1	sp|Q9P2Y5|UVRAG_HUMAN	*-*-	UV radiation resistance-associated gene protein	IPR018791 (UV radiation resistance protein/autophagy-related protein 14)	GO:0010508 (positive regulation of autophagy)
Niben101Scf07727g00004.1			Unknown protein		
Niben101Scf02929g04033.1	sp|Q38ZR1|RSMG_LACSS	--*-	Ribosomal RNA small subunit methyltransferase G		
Niben101Scf17839g04012.1	sp|Q8W1E0|R1A_SOLDE	*-*-	Late blight resistance protein R1-A		
Niben101Scf07346g04006.1	AT5G17540.1	****	HXXXD-type acyl-transferase family protein LENGTH=461	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02030g05001.1	sp|Q6AZH6|FAF2A_XENLA	*-*-	FAS-associated factor 2-A	IPR006577 (UAS), IPR012336 (Thioredoxin-like fold)	
Niben101Scf10900g01019.1			Unknown protein		
Niben101Scf04104g07007.1	sp|Q9BVJ7|DUS23_HUMAN	*-**	Dual specificity protein phosphatase 23	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf05056g03007.1	AT2G36970.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=490	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00870g17010.1	sp|Q254M8|SURE_CHLFF	*-**	5'-nucleotidase SurE	IPR002828 (Survival protein SurE-like phosphatase/nucleotidase), IPR030048 (Survival protein SurE)	GO:0008252 (nucleotidase activity), GO:0016787 (hydrolase activity)
Niben101Scf07682g01012.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00135g00011.1	sp|P53415|CHS2_SECCE	***-	Chalcone synthase 2	IPR011141 (Polyketide synthase, type III), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0009058 (biosynthetic process), GO:0016746 (transferase activity, transferring acyl groups), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02430g03006.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07044g02004.1	sp|Q04996|HAT31_ARATH	--*-	Homeobox protein HAT3.1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf07850g07006.1	AT3G11560.2	*-*-	LETM1-like protein LENGTH=872		
Niben101Scf02840g03003.1	AT1G14180.1	***-	RING/U-box superfamily protein LENGTH=348	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03147g02010.1	sp|Q9LZM8|BLH9_ARATH	*-*-	BEL1-like homeodomain protein 9	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01636g01010.1	sp|Q9ZUH5|SDR2B_ARATH	--**	Short-chain dehydrogenase/reductase 2b	IPR002198 (Short-chain dehydrogenase/reductase SDR)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01557g02003.1			Unknown protein		
Niben101Scf15666g00010.1	AT5G24580.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=319	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf26775g00013.1	sp|Q9LJW0|PHO19_ARATH	*-*-	Phosphate transporter PHO1 homolog 9	IPR004331 (SPX, N-terminal), IPR004342 (EXS, C-terminal)	GO:0016021 (integral component of membrane)
Niben101Scf09878g04002.1	AT1G10210.1	****	mitogen-activated protein kinase 1 LENGTH=370	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07155g03020.1	AT5G18290.1	***-	Aquaporin-like superfamily protein LENGTH=243	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02427g02012.1	sp|Q9LVC3|PUM12_ARATH	*-*-	Pumilio homolog 12	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf03842g02010.1	gb|AID21636.1|	--*-	At4g21420p-like protein [Arabidopsis lyrata]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf11224g00008.1	sp|Q6Z461|SPL13_ORYSJ	*-**	Squamosa promoter-binding-like protein 13	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf02840g01014.1	AT1G69510.1	*-*-	cAMP-regulated phosphoprotein 19-related protein LENGTH=137	IPR006760 (Endosulphine)	
Niben101Scf00749g00003.1	sp|P93751|ZFP8_ARATH	***-	Zinc finger protein 8	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf07945g01008.1	sp|Q9LS72|PP261_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08698g00005.1	AT1G30040.1	***-	gibberellin 2-oxidase LENGTH=341	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf06684g01008.1	gb|KEH21133.1|	*-**	heavy metal transport/detoxification superfamily protein [Medicago truncatula]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf04028g03020.1	sp|Q9SVU4|TET20_ARATH	***-	Tetraspanin-20	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf04434g00015.1	sp|B0BVB8|ATPA_RICRO	*-**	ATP synthase subunit alpha	IPR005294 (ATPase, F1 complex, alpha subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf09242g00008.1	sp|P41127|RL131_ARATH	***-	60S ribosomal protein L13-1	IPR001380 (Ribosomal protein L13e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00693g00003.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04671g04001.1	ref|XP_002513735.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF48682.1| conserved hypothetical protein [Ricinus communis]	IPR021410 (The fantastic four family)	
Niben101Scf02552g00010.1	gb|AAX19025.1|	--*-	Hcr2-p3 [Solanum pimpinellifolium]		
Niben101Scf06986g00012.1	sp|C4Y1G7|AIM32_CLAL4	--*-	Altered inheritance of mitochondria protein 32	IPR009737 (Sucraseferredoxin-like)	
Niben101Scf03969g01008.1	ref|XP_007022985.1|	***-	Hydroxyproline-rich glycoprotein family protein isoform 2 [Theobroma cacao] gb|EOY25607.1| Hydroxyproline-rich glycoprotein family protein isoform 2 [Theobroma cacao]		
Niben101Scf00849g01013.1	AT5G44000.1	***-	Glutathione S-transferase family protein LENGTH=399	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR016639 (Glutathione S-transferase (GST))	GO:0005515 (protein binding)
Niben101Scf04610g01009.1	sp|Q5SPX3|RN215_MOUSE	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00506g01015.1			Unknown protein		
Niben101Scf05565g02022.1	sp|Q9M9S0|ZHD4_ARATH	***-	Zinc-finger homeodomain protein 4	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf17094g01001.1	sp|Q9M0X5|CRK25_ARATH	*-**	Cysteine-rich receptor-like protein kinase 25	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02249g02011.1	sp|P41127|RL131_ARATH	***-	60S ribosomal protein L13-1	IPR001380 (Ribosomal protein L13e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf13856g00022.1	sp|A7MQP6|RL7_CROS8	*-*-	50S ribosomal protein L7/L12	IPR000206 (Ribosomal protein L7/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07619g00002.1	sp|P08628|THIO_RABIT	***-	Thioredoxin	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf10676g02015.1	gb|KGI92238.1|	-**-	glyoxalase [Pseudomonas sp. H2]	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf08737g00012.1	gb|KEH42602.1|	--**	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf04122g05014.1	AT1G11260.1	****	sugar transporter 1 LENGTH=522	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf18356g00007.1	sp|Q69TG5|MAD55_ORYSJ	--*-	MADS-box transcription factor 55	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf21097g00005.1	AT5G66740.1	*-*-	Protein of unknown function (DUF620) LENGTH=370	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf08029g04003.1	sp|Q6UB98|ANR12_HUMAN	--*-	Ankyrin repeat domain-containing protein 12	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf03596g00009.1	sp|Q9S7Y1|BH030_ARATH	***-	Transcription factor bHLH30	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00278g00004.1			Unknown protein		
Niben101Scf09038g00001.1	sp|Q93WI2|TB1_MAIZE	*-*-	Transcription factor TEOSINTE BRANCHED 1	IPR005333 (Transcription factor, TCP)	
Niben101Scf07133g00015.1	AT2G07771.2	****	Cytochrome C assembly protein LENGTH=256	IPR002541 (Cytochrome c assembly protein), IPR003557 (Cytochrome c-type biogenesis protein CcmC)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf04549g10017.1	sp|A1R728|PDXT_ARTAT	*-**	Glutamine amidotransferase subunit PdxT	IPR002161 (PdxT/SNO family), IPR029062 (Class I glutamine amidotransferase-like)	GO:0006543 (glutamine catabolic process), GO:0016740 (transferase activity), GO:0042823 (pyridoxal phosphate biosynthetic process)
Niben101Scf01249g01002.1	AT1G73480.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=463	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01386g00005.1	AT2G36770.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04444g09012.1	sp|P49350|FPPS_ARTAN	***-	Farnesyl pyrophosphate synthase	IPR000092 (Polyprenyl synthetase)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf00100g00017.1	sp|Q6L545|GID1_ORYSJ	***-	Gibberellin receptor GID1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01374g02004.1	AT2G07771.2	****	Cytochrome C assembly protein LENGTH=256	IPR002541 (Cytochrome c assembly protein), IPR003557 (Cytochrome c-type biogenesis protein CcmC)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf00296g01016.1	emb|CDX75752.1|	*-*-	BnaC03g38350D [Brassica napus]		
Niben101Scf01191g02001.1	sp|P41915|RAN_TETTH	****	GTP-binding nuclear protein Ran	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02066g05013.1	ref|XP_002516966.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF45580.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03817g08006.1	ref|XP_002515874.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46543.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02540g01009.1	sp|Q54RZ2|YIPF6_DICDI	*-*-	Protein YIPF6 homolog		
Niben101Scf07199g01008.1			Unknown protein		
Niben101Scf08531g01003.1	emb|CDY12549.1|	***-	BnaC06g00750D [Brassica napus]		
Niben101Scf00741g01034.1			Unknown protein		
Niben101Scf18652g00019.1			Unknown protein		
Niben101Scf02440g01037.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000742 (Epidermal growth factor-like domain), IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf02827g08002.1	sp|Q6LA43|APRR2_ARATH	***-	Two-component response regulator-like APRR2	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07563g00006.1	AT4G08850.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf02085g18007.1	sp|Q9FZP1|HPSE3_ARATH	***-	Heparanase-like protein 3	IPR005199 (Glycoside hydrolase, family 79)	GO:0016020 (membrane), GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf00854g11038.1			Unknown protein		
Niben101Scf02468g02013.1	sp|B0FGA9|GAS2_HELAN	--*-	Germacrene A synthase 2		
Niben101Scf02430g00009.1			Unknown protein		
Niben101Scf02819g00006.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf09025g02027.1	sp|O67886|HEMN_AQUAE	****	Oxygen-independent coproporphyrinogen-III oxidase	IPR004559 (Coproporphyrinogen III oxidase, oxygen-independent related), IPR007197 (Radical SAM)	GO:0003824 (catalytic activity), GO:0004109 (coproporphyrinogen oxidase activity), GO:0005737 (cytoplasm), GO:0006779 (porphyrin-containing compound biosynthetic process), GO:0051536 (iron-sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00176g09013.1	AT1G11545.1	****	xyloglucan endotransglucosylase/hydrolase 8 LENGTH=305	IPR008264 (Beta-glucanase), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf09472g02001.1	AT1G33800.1	***-	Protein of unknown function (DUF579) LENGTH=297	IPR021148 (Putative polysaccharide biosynthesis protein), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf02565g02006.1	gb|ACV92008.1|	*-*-	WRKY transcription factor 6 [(Populus tomentosa x Populus bolleana) x Populus tomentosa]		
Niben101Scf03045g08004.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04748g03001.1	ref|XP_002515369.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF46818.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf03747g04003.1	sp|O80822|PER25_ARATH	*-**	Peroxidase 25	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04067g00001.1	sp|O53182|KORA_MYCTU	--*-	2-oxoglutarate oxidoreductase subunit KorA		
Niben101Scf03102g00007.1	AT5G58000.1	*-*-	Reticulon family protein LENGTH=487		
Niben101Scf00853g00012.1	sp|Q9LYZ9|PP362_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01396g07012.1	AT4G32440.2	***-	Plant Tudor-like RNA-binding protein LENGTH=393	IPR005491 (EMSY N-terminal), IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf12919g00034.1	sp|Q8W491|U73B3_ARATH	*-*-	UDP-glycosyltransferase 73B3	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf09989g01014.1	emb|CDY40386.1|	*-*-	BnaA02g27000D [Brassica napus]		
Niben101Scf05395g04016.1	sp|Q8RWS8|PP199_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04081g02013.1	sp|Q1JPL7|PME18_ARATH	****	Pectinesterase/pectinesterase inhibitor 18	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01220g04015.1	sp|P55142|GRXC6_ORYSJ	-**-	Glutaredoxin-C6	IPR012336 (Thioredoxin-like fold)	
Niben101Scf03123g00017.1	AT1G70260.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=375	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf04632g03005.1	gb|AEV46300.1|	*-*-	apoplastic invertase [Solanum tuberosum]		
Niben101Scf03031g02019.1	sp|P46259|TBA1_PEA	*-*-	Tubulin alpha-1 chain	IPR000217 (Tubulin)	GO:0005874 (microtubule), GO:0007017 (microtubule-based process)
Niben101Scf00736g01013.1	sp|Q9FNA9|PDAT1_ARATH	****	Phospholipid:diacylglycerol acyltransferase 1	IPR003386 (Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0008374 (O-acyltransferase activity)
Niben101Scf03855g01012.1	sp|Q84WG1|NHX3_ARATH	*-**	Sodium/hydrogen exchanger 3	IPR006153 (Cation/H+ exchanger), IPR018422 (Cation/H+ exchanger, CPA1 family)	GO:0005774 (vacuolar membrane), GO:0005886 (plasma membrane), GO:0006812 (cation transport), GO:0006814 (sodium ion transport), GO:0009651 (response to salt stress), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055075 (potassium ion homeostasis), GO:0055085 (transmembrane transport)
Niben101Scf02014g00037.1	sp|Q10051|PRP19_CAEEL	*-*-	Pre-mRNA-processing factor 19	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01559g03017.1	ref|NP_001148046.1|	****	LOC100281655 [Zea mays] gb|ACG29576.1| metal ion binding protein [Zea mays]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf00367g09002.1	sp|A1VS84|RL28_POLNA	*-*-	50S ribosomal protein L28	IPR001383 (Ribosomal protein L28), IPR026569 (Ribosomal protein L28/L24)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Ctg15996g00001.1	AT5G06940.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=872	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf01642g00019.1	sp|Q54GD3|NPL4_DICDI	*-*-	Nuclear protein localization protein 4 homolog	IPR007717 (Nuclear pore localisation protein NPL4), IPR024682 (Nuclear pore localisation protein Npl4, ubiquitin-like domain), IPR029071 (Ubiquitin-related domain)	
Niben101Scf01494g15006.1	AT1G70170.1	****	matrix metalloproteinase LENGTH=378	IPR021190 (Peptidase M10A), IPR024079 (Metallopeptidase, catalytic domain)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity), GO:0008270 (zinc ion binding), GO:0031012 (extracellular matrix)
Niben101Scf00397g11003.1	sp|Q6P7W0|SENP6_MOUSE	--*-	Sentrin-specific protease 6	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf02576g00016.1	sp|Q8W469|SIPL2_ARATH	*-**	Signal peptide peptidase-like 2	IPR003137 (Protease-associated domain, PA), IPR007369 (Peptidase A22B, signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf00539g07005.1	emb|CDY01382.1|	***-	BnaA07g11550D [Brassica napus]		
Niben101Scf02824g03019.1	sp|Q9LM76|PUB44_ARATH	***-	U-box domain-containing protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf04993g06011.1	ref|XP_003594235.1|	***-	F-box protein [Medicago truncatula]	IPR017451 (F-box associated interaction domain)	
Niben101Scf01426g00015.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00160g10030.1	gb|EMT14703.1|	--*-	Zinc finger protein VAR3, chloroplastic [Aegilops tauschii]		
Niben101Scf06504g00002.1	sp|Q0WVN5|CSLG3_ARATH	****	Cellulose synthase-like protein G3	IPR005150 (Cellulose synthase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf04086g01005.1	sp|Q93WP8|HSYA_TOBAC	***-	Hydroxyproline-rich systemin A		
Niben101Scf00783g03004.1	sp|Q9C8M9|SRF6_ARATH	*-*-	Protein STRUBBELIG-RECEPTOR FAMILY 6		
Niben101Scf05519g00002.1	sp|O24160|TGA21_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06726g00032.1	sp|O14775|GBB5_HUMAN	****	Guanine nucleotide-binding protein subunit beta-5	IPR016346 (Guanine nucleotide-binding protein, beta subunit)	GO:0005515 (protein binding)
Niben101Scf00980g06002.1	AT3G50170.1	*-*-	Plant protein of unknown function (DUF247) LENGTH=541	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf00163g00010.1	AT2G33590.1	****	NAD(P)-binding Rossmann-fold superfamily protein LENGTH=321	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf02483g06005.1	sp|Q6IWA9|CLE45_ARATH	--*-	CLAVATA3/ESR (CLE)-related protein 45		
Niben101Scf16338g00002.1			Unknown protein		
Niben101Scf05669g02027.1	gb|ADG38082.1|	*-*-	AT1G76250-like protein [Capsella grandiflora]		
Niben101Scf02353g05007.1	sp|Q9XTT8|PP4C2_CAEEL	***-	Serine/threonine-protein phosphatase 4 catalytic subunit 2	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf00021g01007.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07183g00001.1	AT4G32400.1	***-	Mitochondrial substrate carrier family protein LENGTH=392	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf00781g00005.1	sp|Q7Z769|S35E3_HUMAN	***-	Solute carrier family 35 member E3	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf02074g03032.1			Unknown protein		
Niben101Scf00225g00008.1	AT5G54160.1	****	O-methyltransferase 1 LENGTH=363	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf00752g02007.1			Unknown protein		
Niben101Ctg14396g00002.1	AT1G58470.1	****	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02972g02007.1	emb|CDY62168.1|	***-	BnaC08g49020D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf17472g00001.1	sp|Q8S8V9|RPOA_ATRBE	*-**	DNA-directed RNA polymerase subunit alpha	IPR008543 (Uncharacterised protein family Ycf2), IPR011262 (DNA-directed RNA polymerase, insert domain)	GO:0003899 (DNA-directed RNA polymerase activity), GO:0005524 (ATP binding), GO:0006351 (transcription, DNA-templated), GO:0009507 (chloroplast), GO:0046983 (protein dimerization activity)
Niben101Scf02050g00014.1	sp|F4I2J8|CATIN_ARATH	*-*-	Cactin		
Niben101Scf04177g02003.1	sp|Q94FY7|TOCC_ARATH	****	Tocopherol cyclase, chloroplastic	IPR025893 (Tocopherol cyclase)	GO:0009976 (tocopherol cyclase activity)
Niben101Scf02062g06004.1	AT5G13490.1	***-	ADP/ATP carrier 2 LENGTH=385	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf00485g01004.1	gb|ACN57982.1|	*-*-	At5g51670-like protein [Capsella grandiflora]	IPR007700 (Protein of unknown function DUF668), IPR021864 (Protein of unknown function DUF3475)	
Niben101Scf00063g13014.1	sp|Q55087|CHLP_SYNY3	****	Geranylgeranyl diphosphate reductase	IPR003042 (Aromatic-ring hydroxylase-like), IPR011777 (Geranylgeranyl reductase family), IPR016040 (NAD(P)-binding domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0015979 (photosynthesis), GO:0015995 (chlorophyll biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0016628 (oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor), GO:0045550 (geranylgeranyl reductase activity), GO:0051188 (cofactor biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf12205g03025.1	AT2G42850.1	***-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03150g04005.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf10713g00011.1			Unknown protein		
Niben101Scf00369g05011.1	sp|Q41638|XTHA_PHAAN	****	Xyloglucan endotransglucosylase/hydrolase protein A	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf05705g00009.1	AT4G26060.1	***-	Ribosomal protein L18ae family LENGTH=133		
Niben101Scf03070g04003.1	sp|Q09WW2|NDHH_MORIN	--*-	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic		
Niben101Scf04143g01003.1	AT5G09580.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=393		
Niben101Scf15956g00013.1	ref|XP_007015291.1|	*-*-	Ankyrin repeat family protein [Theobroma cacao] gb|EOY32910.1| Ankyrin repeat family protein [Theobroma cacao]		
Niben101Scf00821g11011.1	AT3G47490.1	*-*-	HNH endonuclease LENGTH=234		
Niben101Scf03565g07015.1	sp|Q8BHN3|GANAB_MOUSE	***-	Neutral alpha-glucosidase AB	IPR000322 (Glycoside hydrolase family 31), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf01767g03011.1			Unknown protein		
Niben101Scf14102g00012.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]		
Niben101Scf04060g02017.1	sp|Q43872|PER64_ARATH	****	Peroxidase 64	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00259g01017.1	sp|Q50940|CAH_NEIGO	***-	Carbonic anhydrase	IPR001148 (Alpha carbonic anhydrase), IPR023561 (Carbonic anhydrase, alpha-class)	GO:0004089 (carbonate dehydratase activity), GO:0006730 (one-carbon metabolic process), GO:0008270 (zinc ion binding)
Niben101Scf03129g06011.1	emb|CDY70669.1|	***-	BnaCnng69290D [Brassica napus]		
Niben101Scf01847g07005.1	AT5G42510.1	*-*-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=182	IPR004265 (Plant disease resistance response protein)	
Niben101Scf00083g02014.1	sp|Q9FXA2|PABP8_ARATH	*-**	Polyadenylate-binding protein 8	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05177g00012.1	AT3G50150.1	***-	Plant protein of unknown function (DUF247) LENGTH=509	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf04448g02007.1	sp|A0RY01|RS13_CENSY	***-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH), IPR027437 (30s ribosomal protein S13, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf14516g00010.1	sp|Q85AC9|PSBD_ANTFO	*-**	Photosystem II D2 protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf03332g05003.1			Unknown protein		
Niben101Scf04674g01003.1	sp|Q9ZNV9|AHP1_ARATH	***-	Histidine-containing phosphotransfer protein 1	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity)
Niben101Scf06080g03002.1	sp|P0C8K3|RPB2_ASFM2	*-**	DNA-directed RNA polymerase subunit 2	IPR007644 (RNA polymerase, beta subunit, protrusion), IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf04481g00020.1	sp|Q6BQJ1|TVP38_DEBHA	--*-	Golgi apparatus membrane protein TVP38		
Niben101Scf08291g00010.1	ref|XP_010103716.1|	*-*-	Sentrin-specific protease 1 [Morus notabilis] gb|EXB96858.1| Sentrin-specific protease 1 [Morus notabilis]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf04256g00001.1	sp|P26215|PGLR_COCCA	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03693g00003.1			Unknown protein		
Niben101Scf00340g01005.1	emb|CDX67716.1|	***-	BnaA07g17560D [Brassica napus]		
Niben101Scf07516g01002.1	sp|Q6DW73|DGDG2_LOTJA	***-	Digalactosyldiacylglycerol synthase 2, chloroplastic		
Niben101Scf00024g02021.1	gb|KEH31889.1|	***-	aminoacyl-tRNA synthetase [Medicago truncatula]	IPR004022 (DDT domain)	
Niben101Scf10152g04002.1	sp|B9DFS6|SNX2B_ARATH	***-	Sorting nexin 2B	IPR001683 (Phox homologous domain), IPR015404 (Vps5 C-terminal), IPR027267 (Arfaptin homology (AH) domain/BAR domain)	GO:0035091 (phosphatidylinositol binding)
Niben101Scf29276g00001.1	sp|O65674|ASK12_ARATH	***-	SKP1-like protein 12	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf09151g01006.1	gb|KEH29822.1|	*-*-	plant/F24K9-26 protein [Medicago truncatula]		
Niben101Scf02307g00011.1	sp|Q6IP06|STK3_XENLA	*-**	Serine/threonine-protein kinase 3	IPR006567 (PUG domain), IPR010513 (KEN domain), IPR011009 (Protein kinase-like domain), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily)	GO:0004540 (ribonuclease activity), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006397 (mRNA processing), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg15327g00004.1	AT5G57190.1	*-*-	phosphatidylserine decarboxylase 2 LENGTH=635		
Niben101Scf02635g00003.1	sp|Q38825|IAA7_ARATH	***-	Auxin-responsive protein IAA7	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf04632g02005.1	AT3G11470.2	***-	4'-phosphopantetheinyl transferase superfamily LENGTH=300	IPR008278 (4'-phosphopantetheinyl transferase superfamily)	GO:0000287 (magnesium ion binding), GO:0008897 (holo-[acyl-carrier-protein] synthase activity), GO:0009059 (macromolecule biosynthetic process)
Niben101Scf06435g01005.1	gb|AHA47115.1|	--*-	NADH dehydrogenase subunit 6 (mitochondrion) [Amborella trichopoda]		
Niben101Scf06076g00015.1	sp|Q9LH43|RLF27_ARATH	--*-	Protein RALF-like 27		
Niben101Scf05295g03022.1	sp|Q9DB40|MED27_MOUSE	--*-	Mediator of RNA polymerase II transcription subunit 27		
Niben101Scf03397g00002.1	emb|CDY63903.1|	*-*-	BnaA01g34680D [Brassica napus]		
Niben101Scf09071g00010.1	sp|P49508|PSB28_ODOSI	****	Photosystem II reaction center Psb28 protein	IPR005610 (Photosystem II Psb28, class 1)	GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0016020 (membrane)
Niben101Scf04276g02014.1	gb|KFB84031.1|	***-	ABC transporter permease [Calothrix sp. 336/3]	IPR003453 (Permease domain)	
Niben101Scf14977g00003.1	sp|Q8H6B1|SPT16_MAIZE	*-*-	FACT complex subunit SPT16		
Niben101Scf01586g01011.1	sp|Q3UHD9|AGAP2_MOUSE	*-**	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf09578g01001.1			Unknown protein		
Niben101Scf06556g07002.1	sp|Q6GLT8|FAHD2_XENLA	*-*-	Fumarylacetoacetate hydrolase domain-containing protein 2	IPR011234 (Fumarylacetoacetase, C-terminal-related)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01295g06001.1	sp|B8DHL1|OBG_LISMH	****	GTPase Obg	IPR014100 (GTP-binding protein Obg/CgtA), IPR015349 (GTP-binding protein OBG, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf03714g05027.1	sp|Q046D9|TILS_LACGA	*-**	tRNA(Ile)-lysidine synthase	IPR012094 (Lysidine-tRNA(Ile) synthetase)	GO:0000166 (nucleotide binding), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008033 (tRNA processing), GO:0016879 (ligase activity, forming carbon-nitrogen bonds)
Niben101Scf00715g05005.1	AT5G25110.1	****	CBL-interacting protein kinase 25 LENGTH=488	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02390g02006.1			Unknown protein		
Niben101Scf03572g04013.1	sp|B6JY16|SLX1_SCHJY	*-*-	Structure-specific endonuclease subunit slx1	IPR000305 (GIY-YIG nuclease superfamily)	
Niben101Scf01277g00002.1	sp|Q9FLJ2|NC100_ARATH	***-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02217g02007.1	sp|Q43804|OLEO1_PRUDU	***-	Oleosin 1	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf01076g04003.1	sp|Q84RD1|ETC2_ARATH	***-	MYB-like transcription factor ETC2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf22195g00026.1	sp|Q6L4F8|GBLPB_ORYSJ	****	Guanine nucleotide-binding protein subunit beta-like protein B	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf06578g01002.1	AT1G32910.1	****	HXXXD-type acyl-transferase family protein LENGTH=464	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02175g05004.1	emb|CDX73190.1|	***-	BnaC06g36380D [Brassica napus]		
Niben101Scf02571g03002.1	AT1G74780.1	***-	Nodulin-like / Major Facilitator Superfamily protein LENGTH=533	IPR010658 (Nodulin-like), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf18531g00004.1	sp|Q8LGG8|USPAL_ARATH	--**	Universal stress protein A-like protein	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf05301g04006.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10743g02014.1	sp|Q8GXL3|SPL8_ARATH	****	Squamosa promoter-binding-like protein 8	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf05674g03003.1	AT2G23530.1	***-	Zinc-finger domain of monoamine-oxidase A repressor R1 LENGTH=552	IPR018866 (Zinc-finger domain of monoamine-oxidase A repressor R1)	
Niben101Scf03709g03009.1	AT4G33440.1	*-*-	Pectin lyase-like superfamily protein LENGTH=475	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02348g07001.1	AT1G11960.1	***-	ERD (early-responsive to dehydration stress) family protein LENGTH=771	IPR003864 (Domain of unknown function DUF221)	GO:0016020 (membrane)
Niben101Scf05702g02008.1	AT2G42850.1	***-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09116g04019.1			Unknown protein		
Niben101Scf09962g00005.1			Unknown protein		
Niben101Scf04926g04007.1	AT5G51100.1	****	Fe superoxide dismutase 2 LENGTH=305	IPR001189 (Manganese/iron superoxide dismutase)	GO:0004784 (superoxide dismutase activity), GO:0006801 (superoxide metabolic process), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03133g01002.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02552g03016.1	AT4G38540.1	****	FAD/NAD(P)-binding oxidoreductase family protein LENGTH=407	IPR003042 (Aromatic-ring hydroxylase-like)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Ctg14324g00001.1	sp|F4KBW6|NU205_ARATH	*-*-	Nuclear pore complex protein NUP205		
Niben101Scf10329g02007.1			Unknown protein		
Niben101Scf02407g02002.1	sp|Q9LJG8|ASIL2_ARATH	*-*-	Trihelix transcription factor ASIL2	IPR006578 (MADF domain), IPR017877 (Myb-like domain)	
Niben101Scf02564g09008.1	AT5G17870.1	***-	plastid-specific 50S ribosomal protein 6 LENGTH=106		
Niben101Scf24358g00009.1			Unknown protein		
Niben101Scf16022g04002.1	sp|Q9FPQ8|KNAT7_ARATH	***-	Homeobox protein knotted-1-like 7	IPR005540 (KNOX1), IPR005541 (KNOX2), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06267g01006.1	sp|P62318|SMD3_HUMAN	***-	Small nuclear ribonucleoprotein Sm D3	IPR010920 (Like-Sm (LSM) domain), IPR027141 (U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3)	
Niben101Scf06441g00014.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02881g01001.1	sp|Q9FLJ2|NC100_ARATH	*-*-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf15809g03001.1	ref|NP_001289833.1|	****	sodium transporter HKT1 [Solanum lycopersicum] emb|CDI45387.1| membrane Na+ transporter [Solanum lycopersicum]	IPR003445 (Cation transporter)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04665g01001.1	sp|P49098|CYB5_TOBAC	*-*-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf04548g00005.1	emb|CDY49543.1|	*-*-	BnaC05g25270D [Brassica napus]		
Niben101Scf14996g00009.1	sp|Q9M5L6|CATA_CAPAN	****	Catalase	IPR002226 (Catalase haem-binding site), IPR010582 (Catalase immune-responsive domain), IPR011614 (Catalase core domain), IPR018028 (Catalase, mono-functional, haem-containing), IPR020835 (Catalase-like domain), IPR024708 (Catalase active site)	GO:0004096 (catalase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00177g01001.1	AT3G12620.1	***-	Protein phosphatase 2C family protein LENGTH=385	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf01785g04011.1	sp|F4KHG6|CTPA1_ARATH	****	Carboxyl-terminal-processing peptidase 1, chloroplastic	IPR001478 (PDZ domain), IPR029045 (ClpP/crotonase-like domain)	GO:0005515 (protein binding), GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf04980g00040.1			Unknown protein		
Niben101Scf03548g02030.1	AT4G25080.3	***-	magnesium-protoporphyrin IX methyltransferase LENGTH=312	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf09100g04010.1			Unknown protein		
Niben101Scf04473g04001.1	AT5G11380.1	*-*-	1-deoxy-D-xylulose 5-phosphate synthase 3 LENGTH=700	IPR029033 (Histidine phosphatase superfamily), IPR029061 (Thiamin diphosphate-binding fold)	
Niben101Scf08777g02002.1	sp|Q8RXT9|GDL8_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02864g01015.1	dbj|BAM48551.1|	***-	Tm-1 protein [Solanum habrochaites]	IPR008322 (Uncharacterised protein family UPF0261), IPR013785 (Aldolase-type TIM barrel), IPR015813 (Pyruvate/Phosphoenolpyruvate kinase-like domain)	GO:0003824 (catalytic activity)
Niben101Scf01063g02002.1	sp|Q9S9N9|CCR1_ARATH	***-	Cinnamoyl-CoA reductase 1	IPR016040 (NAD(P)-binding domain)	
Niben101Scf00317g06017.1	AT1G80270.1	***-	PENTATRICOPEPTIDE REPEAT 596 LENGTH=596	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06504g01025.1	sp|Q9VLR5|TCP4_DROME	*-**	RNA polymerase II transcriptional coactivator	IPR009044 (ssDNA-binding transcriptional regulator)	GO:0003677 (DNA binding), GO:0003713 (transcription coactivator activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04350g04004.1	sp|Q40477|ERF4_TOBAC	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10557g01003.1	sp|P82735|DF156_ARATH	-**-	Defensin-like protein 156		
Niben101Scf08294g05005.1	AT1G04985.1	***-	unknown protein; Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=193		
Niben101Scf00349g03001.1	sp|F4JIF5|TCX2_ARATH	*-*-	Protein tesmin/TSO1-like CXC 2	IPR005172 (CRC domain), IPR028307 (Lin-54 family)	
Niben101Scf01951g00018.1	AT5G52390.1	*-*-	PAR1 protein LENGTH=195	IPR009489 (PAR1)	
Niben101Scf10188g01004.1	sp|Q9C5E5|DGK5_ARATH	*-**	Diacylglycerol kinase 5	IPR000756 (Diacylglycerol kinase, accessory domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf00965g02017.1	ref|XP_007017834.1|	****	Transcription elongation factor family protein, putative isoform 1 [Theobroma cacao] ref|XP_007017835.1| Transcription elongation factor family protein, putative isoform 1 [Theobroma cacao] gb|EOY15059.1| Transcription elongation factor family protein, putative isoform 1 [Theobroma cacao] gb|EOY15060.1| Transcription elongation factor family protein, putative isoform 1 [Theobroma cacao]	IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf02063g01001.1	sp|A2XQX0|ARP9_ORYSI	*-*-	Actin-related protein 9		
Niben101Scf03711g00002.1	sp|P38055|YDJE_ECOLI	****	Inner membrane metabolite transport protein YdjE	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf07152g04011.1	ref|NP_974761.1|	--*-	RNase L inhibitor protein-like protein [Arabidopsis thaliana] gb|AED91489.1| RNase L inhibitor protein-like protein [Arabidopsis thaliana]		
Niben101Scf01382g02010.1	sp|P15356|RS7_HALMO	***-	30S ribosomal protein S7	IPR000235 (Ribosomal protein S5/S7), IPR023798 (Ribosomal protein S7 domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0006412 (translation)
Niben101Scf03535g01022.1	sp|Q5LCF4|CINAL_BACFN	*-*-	CinA-like protein	IPR001453 (Molybdopterin binding domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006777 (Mo-molybdopterin cofactor biosynthetic process)
Niben101Scf01611g00004.1	sp|Q8LFD3|ATB23_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-23	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf03643g02036.1			Unknown protein		
Niben101Scf00046g04027.1	sp|Q46ZP3|TRUB_CUPPJ	*-**	tRNA pseudouridine synthase B	IPR002501 (Pseudouridine synthase II)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf22524g00011.1	sp|Q94758|DYL1_SCHMA	***-	Dynein light chain	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Scf01825g04012.1	ref|NP_001052968.1|	***-	product [Oryza sativa Japonica Group]	IPR008976 (Lipase/lipooxygenase, PLAT/LH2)	GO:0005515 (protein binding)
Niben101Scf00219g03008.1	sp|Q802A6|STK4_SQUAC	*-**	Serine/threonine-protein kinase 3/4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11844g02012.1	AT2G07749.1	***-	Mitovirus RNA-dependent RNA polymerase LENGTH=246	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf00530g06018.1	sp|Q700C7|SPCH_ARATH	***-	Transcription factor SPEECHLESS	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00479g01015.1	sp|P15904|POR_AVESA	***-	Protochlorophyllide reductase	IPR016040 (NAD(P)-binding domain)	
Niben101Scf15614g00004.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR003959 (ATPase, AAA-type, core), IPR008543 (Uncharacterised protein family Ycf2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf01383g03012.1	sp|A9ZPJ7|AGCT2_HORVU	*-*-	Agmatine coumaroyltransferase-2	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02831g02023.1	gb|KEH39474.1|	*-*-	aleurone layer morphogenesis protein [Medicago truncatula]		
Niben101Scf01526g10005.1	sp|Q88Z84|KPRS1_LACPL	****	Ribose-phosphate pyrophosphokinase 1	IPR005946 (Ribose-phosphate diphosphokinase), IPR029057 (Phosphoribosyltransferase-like), IPR029099 (Ribose-phosphate pyrophosphokinase, N-terminal domain)	GO:0000287 (magnesium ion binding), GO:0004749 (ribose phosphate diphosphokinase activity), GO:0009156 (ribonucleoside monophosphate biosynthetic process), GO:0009165 (nucleotide biosynthetic process), GO:0044249 (cellular biosynthetic process)
Niben101Scf00155g01010.1			Unknown protein		
Niben101Scf00751g04012.1	sp|Q10RP4|SE14_ORYSJ	*-*-	Lysine-specific demethylase SE14		
Niben101Scf14526g02012.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01276g02007.1	sp|O82703|VATG2_TOBAC	****	V-type proton ATPase subunit G 2	IPR005124 (Vacuolar (H+)-ATPase G subunit)	GO:0015992 (proton transport), GO:0016471 (vacuolar proton-transporting V-type ATPase complex), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances)
Niben101Scf01789g00008.1	sp|Q9M0X5|CRK25_ARATH	*-**	Cysteine-rich receptor-like protein kinase 25	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09103g00003.1	sp|Q2JIG0|ATPA_SYNJB	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR004100 (ATPase, F1 complex alpha/beta subunit, N-terminal domain), IPR023366 (ATP synthase subunit alpha-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015992 (proton transport), GO:0046034 (ATP metabolic process)
Niben101Scf02413g02009.1	sp|Q38857|XTH22_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf00724g00002.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf08285g00019.1			Unknown protein		
Niben101Scf05522g00003.1	emb|CDR14409.1|	--*-	Plasmodium exported protein, unknown function [Plasmodium chabaudi chabaudi]		
Niben101Scf03497g11006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05955g03030.1	AT4G01730.1	*-*-	DHHC-type zinc finger family protein LENGTH=508		
Niben101Scf00490g01028.1	AT4G22900.1	***-	Protein of unknown function (DUF1191) LENGTH=343	IPR010605 (Protein of unknown function DUF1191)	
Niben101Scf02822g00001.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf19143g00007.1			Unknown protein		
Niben101Scf11124g01046.1	sp|Q0WPZ6|PP158_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05425g00012.1	sp|P9WIW0|NUOL_MYCTO	*-*-	NADH-quinone oxidoreductase subunit L	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf01082g04001.1	sp|Q8L9K1|ERF99_ARATH	*-**	Ethylene-responsive transcription factor 13	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg13058g00002.1	sp|Q9FFF9|APC1_ARATH	*-*-	Anaphase-promoting complex subunit 1		
Niben101Scf02797g01006.1	sp|Q9SSE5|COL9_ARATH	***-	Zinc finger protein CONSTANS-LIKE 9		
Niben101Scf07691g00008.1	gb|KFB86097.1|	***-	dihydrolipoamide dehydrogenase [Calothrix sp. 336/3]	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR016156 (FAD/NAD-linked reductase, dimerisation domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0016668 (oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01812g05009.1	gb|ABA91336.1|	--*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf00264g02012.1	AT1G76620.1	***-	Protein of unknown function, DUF547 LENGTH=527	IPR006869 (Domain of unknown function DUF547), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	
Niben101Scf00590g01004.1	sp|Q96MX3|ZNF48_HUMAN	--*-	Zinc finger protein 48	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf04024g02027.1			Unknown protein		
Niben101Scf01372g11012.1	sp|P42211|ASPRX_ORYSJ	****	Aspartic proteinase	IPR001461 (Aspartic peptidase), IPR011001 (Saposin-like), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf07511g03008.1	ref|XP_007047763.1|	***-	Transcription initiation factor TFIID subunit 8, putative isoform 1 [Theobroma cacao] gb|EOX91920.1| Transcription initiation factor TFIID subunit 8, putative isoform 1 [Theobroma cacao]	IPR006565 (Bromodomain transcription factor)	
Niben101Scf03341g04008.1	emb|CDY23462.1|	*-*-	BnaC04g49900D [Brassica napus]		
Niben101Scf07304g02017.1	ref|WP_025776070.1|	*-**	nucleotidase [Clostridium botulinum]	IPR010708 (5'(3')-deoxyribonucleotidase), IPR023214 (HAD-like domain)	GO:0008253 (5'-nucleotidase activity), GO:0009264 (deoxyribonucleotide catabolic process)
Niben101Ctg15330g00004.1	AT5G07900.1	****	Mitochondrial transcription termination factor family protein LENGTH=405	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11361g02026.1	sp|Q9BTW9|TBCD_HUMAN	***-	Tubulin-specific chaperone D	IPR016024 (Armadillo-type fold), IPR022577 (Tubulin-specific chaperone D, C-terminal)	GO:0005488 (binding)
Niben101Scf14012g01001.1			Unknown protein		
Niben101Scf28415g00011.1	sp|Q9STM6|GDL57_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf18896g00009.1	tpg|DAA60876.1|	--*-	TPA: hypothetical protein ZEAMMB73_591499 [Zea mays]		
Niben101Scf00577g07003.1	emb|CDX83565.1|	***-	BnaC07g23050D [Brassica napus]		
Niben101Scf06286g00004.1	sp|Q06672|TSR2_YEAST	*-*-	Pre-rRNA-processing protein TSR2	IPR019398 (Pre-rRNA-processing protein TSR2)	
Niben101Scf12550g00002.1	sp|Q5FUB1|DXS_GLUOX	****	1-deoxy-D-xylulose-5-phosphate synthase	IPR005477 (Deoxyxylulose-5-phosphate synthase), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0008661 (1-deoxy-D-xylulose-5-phosphate synthase activity), GO:0016114 (terpenoid biosynthetic process)
Niben101Scf01694g11001.1	AT1G75710.1	***-	C2H2-like zinc finger protein LENGTH=462	IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR015880 (Zinc finger, C2H2-like)	GO:0003950 (NAD+ ADP-ribosyltransferase activity), GO:0046872 (metal ion binding)
Niben101Scf01305g01003.1	AT2G26150.1	*-**	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00901g01001.1	AT1G80160.1	***-	Lactoylglutathione lyase / glyoxalase I family protein LENGTH=167	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf02312g04002.1	sp|Q6FF50|RLMB_ACIAD	*-**	23S rRNA (guanosine-2'-O-)-methyltransferase RlmB	IPR029028 (Alpha/beta knot methyltransferases), IPR029064 (50S ribosomal protein L30e-like)	GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0008168 (methyltransferase activity), GO:0008173 (RNA methyltransferase activity)
Niben101Scf02979g02003.1	sp|Q9SY66|FRS11_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 11	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf00482g08004.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01100g06008.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03518g05008.1	AT1G67970.1	****	heat shock transcription factor A8 LENGTH=374	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf17830g00003.1	AT3G02700.1	***-	NC domain-containing protein-related LENGTH=252	IPR007053 (LRAT-like domain)	
Niben101Scf02160g06044.1	sp|Q5TCZ1|SPD2A_HUMAN	--*-	SH3 and PX domain-containing protein 2A		
Niben101Scf06674g05026.1	sp|Q9CAA4|BIM2_ARATH	--*-	Transcription factor BIM2		
Niben101Scf01090g04019.1	sp|Q9XHP0|11S2_SESIN	***-	11S globulin seed storage protein 2	IPR006044 (11-S seed storage protein, plant)	GO:0045735 (nutrient reservoir activity)
Niben101Scf05618g04002.1	sp|Q9SC19|UPTG1_SOLTU	***-	Alpha-1,4-glucan-protein synthase [UDP-forming] 1	IPR004901 (Reversibly glycosylated polypeptide family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016866 (intramolecular transferase activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf01209g05011.1	ref|XP_002519145.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF43356.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Ctg15500g00003.1	sp|Q84WB7|GT645_ARATH	*-*-	Glycosyltransferase family protein 64 protein C5		
Niben101Scf12159g03004.1			Unknown protein		
Niben101Scf01545g01012.1	ref|XP_007013803.1|	***-	Plant natriuretic peptide A [Theobroma cacao] gb|EOY31422.1| Plant natriuretic peptide A [Theobroma cacao]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf09665g00001.1	AT3G60690.1	***-	SAUR-like auxin-responsive protein family LENGTH=170	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf04699g01012.1	sp|P10582|DPOM_MAIZE	*-**	DNA polymerase	IPR004868 (DNA-directed DNA polymerase, family B, mitochondria/virus), IPR012337 (Ribonuclease H-like domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf00103g04009.1	AT2G38500.1	*-*-	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=356		
Niben101Scf06837g01003.1	AT2G15240.1	***-	UNC-50 family protein LENGTH=252	IPR007881 (UNC-50)	
Niben101Scf02172g06025.1	emb|CDX96874.1|	*-*-	BnaA08g24170D [Brassica napus]	IPR008581 (Protein of unknown function DUF863, plant)	
Niben101Scf02864g07004.1	sp|Q8CFD1|RBM45_RAT	--**	RNA-binding protein 45	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05430g02004.1	AT2G31840.1	***-	Thioredoxin superfamily protein LENGTH=350	IPR012336 (Thioredoxin-like fold)	
Niben101Scf15326g00020.1	sp|P45555|DNAJ_STAAU	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf02294g03015.1	sp|Q9D967|MGDP1_MOUSE	****	Magnesium-dependent phosphatase 1	IPR010036 (Magnesium-dependent phosphatase-1, eukaryotic/arcaheal type), IPR023214 (HAD-like domain)	GO:0016791 (phosphatase activity)
Niben101Scf05848g03005.1	sp|P46291|RL38_SOLLC	***-	60S ribosomal protein L38	IPR002675 (Ribosomal protein L38e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00058g09014.1	AT3G22425.2	****	imidazoleglycerol-phosphate dehydratase LENGTH=270	IPR000807 (Imidazoleglycerol-phosphate dehydratase)	GO:0000105 (histidine biosynthetic process), GO:0004424 (imidazoleglycerol-phosphate dehydratase activity)
Niben101Scf04385g01004.1	sp|A4FUZ5|SERC3_BOVIN	***-	Serine incorporator 3	IPR005016 (Serine incorporator/TMS membrane protein)	GO:0016020 (membrane)
Niben101Scf07508g03004.1	ref|NP_001077559.2|	***-	NDH dependent flow 6 protein [Arabidopsis thaliana] gb|AEE29754.1| NDH dependent flow 6 protein [Arabidopsis thaliana]		
Niben101Scf03779g01012.1	ref|XP_007008921.1|	***-	Differentiation-associated protein 1, putative isoform 2 [Theobroma cacao] gb|EOY17731.1| Differentiation-associated protein 1, putative isoform 2 [Theobroma cacao]		
Niben101Scf08368g01012.1	sp|Q8L7S4|MP702_ARATH	****	Microtubule-associated protein 70-2	IPR009768 (Microtubule-associated protein 70)	GO:0007010 (cytoskeleton organization), GO:0008017 (microtubule binding)
Niben101Scf00410g01010.1	ref|XP_010103716.1|	--*-	Sentrin-specific protease 1 [Morus notabilis] gb|EXB96858.1| Sentrin-specific protease 1 [Morus notabilis]		
Niben101Scf01506g04005.1	AT5G28150.1	***-	Plant protein of unknown function (DUF868) LENGTH=289	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf02160g06070.1	sp|Q47HG6|NUOK_DECAR	*-**	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K), IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf00895g00003.1	gb|AEW48209.1|	*-*-	disease resistance protein RGH5 [Solanum huancabambense]		
Niben101Scf02356g00011.1	AT2G18190.1	*-*-	P-loop containing nucleoside triphosphate hydrolases superfamily protein LENGTH=494	IPR025753 (AAA-type ATPase, N-terminal domain)	
Niben101Scf05319g02006.1	ref|XP_007034599.1|	***-	Alpha/beta-Hydrolases superfamily protein isoform 4 [Theobroma cacao] gb|EOY05525.1| Alpha/beta-Hydrolases superfamily protein isoform 4 [Theobroma cacao]	IPR013744 (Protein of unknown function DUF1749), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03362g02001.1	gb|ABI34346.1|	--*-	Late blight resistance protein, putative [Solanum demissum]		
Niben101Scf00672g00001.1	sp|P10984|ACT2_CAEEL	***-	Actin-2	IPR004000 (Actin family)	
Niben101Scf00812g02010.1	sp|O64705|PP184_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03733g03020.1	sp|Q9S7N7|PSAG_ARATH	****	Photosystem I reaction center subunit V, chloroplastic	IPR000549 (Photosystem I PsaG/PsaK protein), IPR023618 (Photosystem I PsaG/PsaK domain)	GO:0009522 (photosystem I), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0016168 (chlorophyll binding)
Niben101Scf13916g00008.1	sp|Q9SZH2|PER43_ARATH	****	Peroxidase 43	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11860g00012.1	AT5G10240.1	****	asparagine synthetase 3 LENGTH=578	IPR006426 (Asparagine synthase, glutamine-hydrolyzing), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004066 (asparagine synthase (glutamine-hydrolyzing) activity), GO:0006529 (asparagine biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf02622g07001.1	sp|Q9Y169|EXT2_DROME	*-*-	Exostosin-2	IPR011040 (Sialidases), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0006024 (glycosaminoglycan biosynthetic process), GO:0015012 (heparan sulfate proteoglycan biosynthetic process), GO:0016021 (integral component of membrane)
Niben101Scf03759g00001.1	AT2G46690.1	***-	SAUR-like auxin-responsive protein family LENGTH=121	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03264g04011.1	sp|Q620W3|EFR3_CAEBR	*-*-	Protein EFR3 homolog	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01897g04007.1	AT3G11000.2	*-*-	DCD (Development and Cell Death) domain protein LENGTH=607	IPR013989 (Development/cell death domain)	
Niben101Scf05588g12009.1	AT3G49400.1	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=892	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR024761 (Transcription factor IIIC, 90kDa subunit, N-terminal)	GO:0005515 (protein binding)
Niben101Scf07593g02004.1	sp|Q9FYQ8|TMN11_ARATH	*-*-	Transmembrane 9 superfamily member 11	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf00138g01002.1	sp|F4IXW2|BIG5_ARATH	*-*-	Brefeldin A-inhibited guanine nucleotide-exchange protein 5		
Niben101Scf00360g05010.1	ref|XP_007011511.1|	--*-	ATP-dependent rRNA helicase SPB4, putative [Theobroma cacao] gb|EOY29130.1| ATP-dependent rRNA helicase SPB4, putative [Theobroma cacao]		
Niben101Scf28881g00002.1	AT1G64640.1	*-*-	early nodulin-like protein 8 LENGTH=191	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf03422g04023.1	AT4G11560.1	*-*-	bromo-adjacent homology (BAH) domain-containing protein LENGTH=587	IPR003618 (Transcription elongation factor S-II, central domain)	GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf04515g00009.1	ref|XP_002529263.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF33095.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06233g01011.1	AT3G02100.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=464	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf08777g05021.1	sp|P22131|ACT1_PHYIN	--*-	Actin-1	IPR004000 (Actin family)	
Niben101Scf14852g00006.1	sp|Q42945|CAMT6_TOBAC	****	Caffeoyl-CoA O-methyltransferase 6	IPR002935 (O-methyltransferase, family 3), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008171 (O-methyltransferase activity)
Niben101Scf00860g00001.1	gb|KFB84484.1|	****	ABC transporter ATP-binding protein [Calothrix sp. 336/3]	IPR010230 (FeS cluster assembly SUF system, ATPase SufC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016887 (ATPase activity)
Niben101Scf02558g00026.1	emb|CDY20964.1|	***-	BnaA08g25610D [Brassica napus]		
Niben101Scf11531g01010.1	AT1G18870.1	*-*-	isochorismate synthase 2 LENGTH=562		
Niben101Scf00747g12003.1	gb|KEH18523.1|	***-	K+-H+ exchange-like protein [Medicago truncatula]	IPR018786 (Protein of unknown function DUF2343)	
Niben101Scf00321g02012.1	AT2G15620.1	****	nitrite reductase 1 LENGTH=586	IPR005117 (Nitrite/Sulfite reductase ferredoxin-like domain), IPR006067 (Nitrite/sulphite reductase 4Fe-4S domain)	GO:0016491 (oxidoreductase activity), GO:0020037 (heme binding), GO:0051536 (iron-sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00854g01040.1	ref|XP_002519967.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF42415.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01466g01004.1	sp|F1MCA7|LRRC7_BOVIN	*-*-	Leucine-rich repeat-containing protein 7	IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0043531 (ADP binding)
Niben101Scf02302g01008.1			Unknown protein		
Niben101Scf02408g04024.1	sp|B1IZB8|AES_ECOLC	--*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf03572g02005.1	sp|Q8SS33|TCPQ_ENCCU	***-	T-complex protein 1 subunit theta	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf00653g02008.1	ref|NP_001052622.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf00428g11019.1	AT4G14920.1	*-*-	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein LENGTH=1138	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf04650g07004.1	sp|Q9SU13|FLA2_ARATH	***-	Fasciclin-like arabinogalactan protein 2	IPR000782 (FAS1 domain)	
Niben101Scf21007g00015.1	gb|KEH38587.1|	*-*-	receptor-like kinase [Medicago truncatula]		
Niben101Scf12891g00002.1	sp|Q9LN49|KCS4_ARATH	*-*-	3-ketoacyl-CoA synthase 4	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf33559g00002.1	sp|Q6AWW5|Y5262_ARATH	--*-	Ankyrin repeat-containing protein	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Ctg11829g00002.1	sp|P14953|TRPE_CLOTM	*-*-	Anthranilate synthase component 1	IPR005801 (ADC synthase)	GO:0009058 (biosynthetic process)
Niben101Scf01992g00005.1	sp|P36410|RAB14_DICDI	*-*-	Ras-related protein Rab-14	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf03479g00001.1	AT3G25160.1	*-**	ER lumen protein retaining receptor family protein LENGTH=272	IPR000133 (ER lumen protein retaining receptor)	GO:0006621 (protein retention in ER lumen), GO:0016021 (integral component of membrane), GO:0046923 (ER retention sequence binding)
Niben101Scf00449g00004.1	AT2G39420.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=317	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04172g00004.1	sp|Q93XY5|TET18_ARATH	***-	Tetraspanin-18	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf01696g04007.1	sp|O24407|IAA16_ARATH	*-*-	Auxin-responsive protein IAA16	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf07310g01003.1	sp|B2XWN9|RPOC2_FAGEA	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf00110g03003.1	gb|AAT46619.1|	*-*-	hepatocellular carcinoma-associated antigen 59 [Homo sapiens]	IPR010756 (Hepatocellular carcinoma-associated antigen 59)	
Niben101Scf01453g03001.1	gb|ACG48000.1|	***-	holocarboxylase synthetase [Zea mays]	IPR016549 (Uncharacterised conserved protein UCP009193)	
Niben101Scf02030g01003.1	ref|XP_002516082.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46502.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02201g00012.1	sp|Q6IRI9|FMO2_RAT	*-**	Dimethylaniline monooxygenase [N-oxide-forming] 2	IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03038g16001.1	sp|O23184|CML19_ARATH	--**	Calcium-binding protein CML19	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf07348g00002.1	ref|XP_007016884.1|	*-*-	Domain of Uncharacterized protein function isoform 4 [Theobroma cacao] gb|EOY34503.1| Domain of Uncharacterized protein function isoform 4 [Theobroma cacao]		
Niben101Scf02003g01002.1	sp|P0CQ57|RSSA_CRYNB	****	40S ribosomal protein S0	IPR001865 (Ribosomal protein S2), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf00339g05023.1	sp|Q9VR59|VIP1_DROME	*-*-	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase	IPR029033 (Histidine phosphatase superfamily)	GO:0003993 (acid phosphatase activity)
Niben101Scf09987g02004.1	sp|Q9WTL2|RAB25_MOUSE	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf01369g03002.1	sp|P54279|PMS2_MOUSE	*-**	Mismatch repair endonuclease PMS2	IPR028831 (DNA mismatch repair protein Pms1/Pms2)	GO:0006298 (mismatch repair), GO:0032300 (mismatch repair complex)
Niben101Scf01329g00002.1	sp|Q93Z81|CAX3_ARATH	****	Vacuolar cation/proton exchanger 3	IPR004713 (Calcium/proton exchanger)	GO:0006812 (cation transport), GO:0006816 (calcium ion transport), GO:0008324 (cation transmembrane transporter activity), GO:0015369 (calcium:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf14361g00015.1	ref|NP_849739.1|	****	inactive poly [ADP-rib [Arabidopsis thaliana] gb|AEE31453.1| inactive poly [ADP-ribose] polymerase RCD1 [Arabidopsis thaliana]	IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR022003 (RST domain of plant C-terminal)	GO:0003950 (NAD+ ADP-ribosyltransferase activity)
Niben101Scf09338g05002.1	AT5G65170.1	*-*-	VQ motif-containing protein LENGTH=362	IPR008889 (VQ)	
Niben101Scf02111g11024.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf00730g00009.1	AT2G43190.1	*-*-	ribonuclease P family protein LENGTH=296		
Niben101Scf04037g00012.1	AT1G77800.1	*-*-	PHD finger family protein LENGTH=1375	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02474g01009.1			Unknown protein		
Niben101Scf01459g01008.1			Unknown protein		
Niben101Scf09141g01009.1	sp|Q93YQ1|RTOR1_ARATH	****	Regulatory-associated protein of TOR 1	IPR004083 (Regulatory associated protein of TOR), IPR029347 (Raptor N-terminal CASPase-like domain)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0031929 (TOR signaling), GO:0031931 (TORC1 complex)
Niben101Scf01559g03018.1	AT3G53130.1	*-*-	Cytochrome P450 superfamily protein LENGTH=539	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00732g07002.1	AT4G17900.1	***-	PLATZ transcription factor family protein LENGTH=227	IPR000315 (Zinc finger, B-box), IPR006734 (Protein of unknown function DUF597)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf01064g05006.1	sp|O22960|TBL37_ARATH	*-*-	Protein trichome birefringence-like 37	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf09234g00017.1	AT1G53645.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=523		
Niben101Scf04632g03004.1	emb|CAA79676.1|	***-	beta-fructofuranosidase [Solanum tuberosum]	IPR001362 (Glycoside hydrolase, family 32), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02839g03014.1	sp|Q93ZR6|WSD1_ARATH	****	O-acyltransferase WSD1	IPR004255 (O-acyltransferase, WSD1, N-terminal), IPR009721 (O-acyltransferase, WSD1, C-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity), GO:0045017 (glycerolipid biosynthetic process)
Niben101Scf07423g05003.1	sp|P54775|PRS6B_MOUSE	*-*-	26S protease regulatory subunit 6B	IPR003959 (ATPase, AAA-type, core), IPR005938 (AAA ATPase, CDC48 family), IPR009010 (Aspartate decarboxylase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029067 (CDC48 domain 2-like)	GO:0005524 (ATP binding), GO:0016787 (hydrolase activity)
Niben101Scf10678g00033.1	sp|Q9SH26|PP102_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01045g00007.1	sp|Q5RC80|RBM39_PONAB	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00110g03002.1	ref|XP_007011120.1|	***-	Agglutinin-like protein ALA1, putative isoform 3 [Theobroma cacao] gb|EOY19930.1| Agglutinin-like protein ALA1, putative isoform 3 [Theobroma cacao]		
Niben101Ctg12665g00001.1	emb|CDY37088.1|	***-	BnaA04g26660D [Brassica napus]	IPR008511 (Protein BYPASS-related)	
Niben101Scf07416g00026.1	AT5G07980.1	*-*-	dentin sialophosphoprotein-related LENGTH=1501		
Niben101Scf09401g01009.1	sp|O22881|POT2_ARATH	****	Potassium transporter 2	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf02564g03014.1	AT1G10040.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=412	IPR007751 (Domain of unknown function DUF676, lipase-like), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf06236g01011.1	sp|P62302|RS13_SOYBN	***-	40S ribosomal protein S13	IPR000589 (Ribosomal protein S15), IPR012606 (Ribosomal protein S13/S15, N-terminal)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04784g00003.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02638g01020.1	sp|O64702|HMG14_ARATH	*-*-	High mobility group B protein 14	IPR009071 (High mobility group box domain)	
Niben101Scf01126g03004.1	sp|Q8LG10|GAT15_ARATH	****	GATA transcription factor 15	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07567g00001.1	sp|Q3T130|TM45B_BOVIN	-**-	Transmembrane protein 45B	IPR006904 (Protein of unknown function DUF716 (TMEM45))	
Niben101Scf03194g00008.1	sp|Q9STT2|VPS29_ARATH	***-	Vacuolar protein sorting-associated protein 29	IPR000979 (Phosphodiesterase MJ0936/Vps29), IPR029052 (Metallo-dependent phosphatase-like)	
Niben101Scf01109g04022.1	dbj|BAB11579.1|	*-*-	membrane related protein-like [Arabidopsis thaliana]	IPR023393 (START-like domain)	
Niben101Scf02026g10001.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06400g00006.1	sp|Q9LSL9|PP445_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06590g04007.1	sp|Q9FKP1|CCX1_ARATH	***-	Cation/calcium exchanger 1	IPR004837 (Sodium/calcium exchanger membrane region)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00109g05009.1	sp|Q9NQG5|RPR1B_HUMAN	*-*-	Regulation of nuclear pre-mRNA domain-containing protein 1B	IPR006569 (CID domain), IPR008942 (ENTH/VHS)	
Niben101Scf08601g00004.1	AT5G10270.1	****	cyclin-dependent kinase C;1 LENGTH=505	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02548g06013.1			Unknown protein	IPR006031 (XYPPX repeat)	
Niben101Scf03396g04012.1	AT5G36130.1	*-*-	Cytochrome P450 superfamily protein LENGTH=140	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06783g00003.1	sp|Q8EXA3|SPEE2_LEPIN	****	Polyamine aminopropyl transferase 2	IPR001045 (Spermidine/spermine synthases family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase), IPR030373 (Polyamine biosynthesis domain, conserved site)	GO:0003824 (catalytic activity), GO:0030750 (putrescine N-methyltransferase activity)
Niben101Scf10608g03010.1	AT3G23820.1	***-	UDP-D-glucuronate 4-epimerase 6 LENGTH=460	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf02829g06001.1	sp|P11029|ACAC_CHICK	*-**	Acetyl-CoA carboxylase	IPR000089 (Biotin/lipoyl attachment), IPR011761 (ATP-grasp fold), IPR011764 (Biotin carboxylation domain), IPR016185 (Pre-ATP-grasp domain)	GO:0003824 (catalytic activity), GO:0004075 (biotin carboxylase activity), GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016874 (ligase activity), GO:0046872 (metal ion binding)
Niben101Scf05579g02003.1	sp|Q8RDR4|GUAA_FUSNN	--*-	GMP synthase [glutamine-hydrolyzing]		
Niben101Scf04071g06013.1	sp|O64882|BGL17_ARATH	*-*-	Beta-glucosidase 17	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01734g01048.1	sp|A7M907|ACCD_CUSGR	*-*-	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	IPR029045 (ClpP/crotonase-like domain)	
Niben101Scf07590g07001.1	sp|Q9EXP1|SUFE_DICD3	--*-	Cysteine desulfuration protein SufE	IPR003808 (Fe-S metabolism associated domain, SufE-like)	
Niben101Scf02816g09002.1			Unknown protein	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf02558g00027.1	emb|CDY50917.1|	***-	BnaC03g72460D [Brassica napus]		
Niben101Scf02688g03005.1	AT3G45140.1	*-*-	lipoxygenase 2 LENGTH=896	IPR000907 (Lipoxygenase)	GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04515g00008.1	emb|CDY45072.1|	***-	BnaA02g05040D [Brassica napus]	IPR007650 (Zf-FLZ domain)	
Niben101Scf06986g00013.1	AT5G47750.1	****	D6 protein kinase like 2 LENGTH=586	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06350g00002.1	sp|Q9S709|U2AFA_ARATH	*-*-	Splicing factor U2af small subunit A	IPR009145 (U2 auxiliary factor small subunit)	GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0046872 (metal ion binding)
Niben101Scf03184g00005.1	sp|P91850|MIFH_BRUMA	***-	Macrophage migration inhibitory factor homolog	IPR001398 (Macrophage migration inhibitory factor), IPR014347 (Tautomerase/MIF superfamily)	
Niben101Scf00726g02006.1	AT4G34980.1	****	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03114g04009.1	ref|WP_031422965.1|	*-*-	glutamine cyclotransferase [Xanthomonas axonopodis]	IPR007788 (Glutamine cyclotransferase)	
Niben101Scf11122g01024.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02407g00012.1	sp|P38824|COX23_YEAST	--*-	Cytochrome c oxidase-assembly factor COX23, mitochondrial	IPR009069 (Cysteine alpha-hairpin motif superfamily), IPR010625 (CHCH)	
Niben101Scf01375g03003.1	emb|CDX96164.1|	-**-	BnaC02g14870D [Brassica napus]		
Niben101Scf01696g06054.1	sp|Q84KJ6|AMT31_ORYSJ	****	Ammonium transporter 3 member 1	IPR001905 (Ammonium transporter), IPR002229 (Blood group Rhesus C/E/D polypeptide), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf03757g01006.1	sp|Q9QYK7|RNF11_MOUSE	--*-	RING finger protein 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02734g00017.1	AT5G03620.1	*-**	Subtilisin-like serine endopeptidase family protein LENGTH=766	IPR015500 (Peptidase S8, subtilisin-related), IPR023827 (Peptidase S8, subtilisin,  Asp-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00581g01015.1			Unknown protein		
Niben101Scf10217g02008.1	AT2G31490.1	***-	unknown protein; Has 55 Blast hits to 55 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=71		
Niben101Scf03506g01003.1	ref|XP_007048947.1|	***-	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative isoform 3, partial [Theobroma cacao] gb|EOX93104.1| Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative isoform 3, partial [Theobroma cacao]		
Niben101Scf16221g00002.1	sp|P83332|TLP1_PRUPE	***-	Thaumatin-like protein 1	IPR001938 (Thaumatin)	
Niben101Scf03755g03006.1	AT3G16490.1	***-	IQ-domain 26 LENGTH=389	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf00713g03019.1	sp|Q17QU7|DHR13_BOVIN	****	Dehydrogenase/reductase SDR family member 13	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02929g04034.1	gb|AIE42546.1|	***-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf08081g03019.1	AT3G61050.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=510	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00421g01018.1	gb|KEH21834.1|	--*-	nuclear transport factor 2 (NTF2) family protein [Medicago truncatula]		
Niben101Scf02066g05014.1	sp|P43186|BEV1M_BETPN	***-	Major pollen allergen Bet v 1-M/N	IPR000916 (Bet v I domain), IPR023393 (START-like domain), IPR024949 (Bet v I type allergen)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf04926g01018.1	sp|Q96KC2|ARL5B_HUMAN	--*-	ADP-ribosylation factor-like protein 5B		
Niben101Scf00135g00010.1	AT4G38790.1	*-**	ER lumen protein retaining receptor family protein LENGTH=273	IPR000133 (ER lumen protein retaining receptor)	GO:0006621 (protein retention in ER lumen), GO:0016021 (integral component of membrane), GO:0046923 (ER retention sequence binding)
Niben101Scf00207g03002.1			Unknown protein		
Niben101Scf02256g00010.1	emb|CDY03722.1|	***-	BnaA02g15150D [Brassica napus]	IPR019308 (Protein of unknown function DUF2359, TMEM214)	
Niben101Scf02840g01013.1	sp|Q41932|PSBQ2_ARATH	*-**	Oxygen-evolving enhancer protein 3-2, chloroplastic	IPR008797 (Photosystem II PsbQ, oxygen evolving complex), IPR023222 (PsbQ-like domain)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf02053g03010.1	AT5G65660.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=136		
Niben101Scf03962g02004.1	gb|AID21636.1|	***-	At4g21420p-like protein [Arabidopsis lyrata]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf11224g00009.1	AT3G15260.1	***-	Protein phosphatase 2C family protein LENGTH=289	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf18348g00013.1	AT1G19360.1	***-	Nucleotide-diphospho-sugar transferase family protein LENGTH=428	IPR003388 (Reticulon), IPR005069 (Nucleotide-diphospho-sugar transferase), IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf02427g02013.1	sp|O82328|GASA7_ARATH	***-	Gibberellin-regulated protein 7	IPR003854 (Gibberellin regulated protein)	
Niben101Scf03156g04001.1	sp|Q9SIT5|CHX15_ARATH	****	Cation/H(+) antiporter 15	IPR006153 (Cation/H+ exchanger), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01209g05010.1	sp|Q9FLG1|BXL4_ARATH	***-	Beta-D-xylosidase 4	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026891 (Fibronectin type III-like domain), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02480g01002.1			Unknown protein		
Niben101Scf06684g01007.1			Unknown protein		
Niben101Scf04973g02010.1	emb|CDY38422.1|	***-	BnaA10g17360D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf09994g00009.1	AT4G00752.1	*-*-	UBX domain-containing protein LENGTH=469	IPR003903 (Ubiquitin interacting motif), IPR009060 (UBA-like), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf15995g04004.1	sp|Q9LZQ1|TBL6_ARATH	*-*-	Protein trichome birefringence-like 6	IPR025846 (PMR5 N-terminal domain), IPR029962 (Trichome birefringence-like family)	
Niben101Scf05278g01014.1	sp|F4KDH9|FIPS5_ARATH	--*-	FIP1		
Niben101Scf02207g03007.1	sp|O22715|AP1M2_ARATH	****	AP-1 complex subunit mu-2	IPR001392 (Clathrin adaptor, mu subunit), IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf00687g04018.1	sp|Q9SMX9|SPL1_ARATH	****	Squamosa promoter-binding-like protein 1	IPR004333 (Transcription factor, SBP-box), IPR020683 (Ankyrin repeat-containing domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf09172g02011.1	emb|CBM56257.1|	*-*-	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	
Niben101Scf12789g00024.1	AT3G07400.1	***-	lipase class 3 family protein LENGTH=1003	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf06743g00005.1	AT4G11610.1	*-**	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1011	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf05183g04006.1			Unknown protein		
Niben101Scf05688g10004.1	AT1G14920.1	***-	GRAS family transcription factor family protein LENGTH=533	IPR005202 (Transcription factor GRAS)	
Niben101Scf05382g02006.1	sp|A2ZBG5|PSK2_ORYSI	--*-	Phytosulfokines 2	IPR009438 (Phytosulfokine)	GO:0005576 (extracellular region), GO:0008083 (growth factor activity), GO:0008283 (cell proliferation)
Niben101Scf05306g00010.1	emb|CDX74968.1|	*-*-	BnaA05g07140D [Brassica napus]		
Niben101Scf04081g02014.1			Unknown protein		
Niben101Scf00506g01016.1	AT5G53750.1	***-	CBS domain-containing protein LENGTH=408	IPR000644 (CBS domain)	
Niben101Scf12919g00035.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04446g00012.1	sp|A2YS06|ATG8C_ORYSI	*-*-	Autophagy-related protein 8C	IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain)	
Niben101Scf15995g01010.1	AT2G34210.1	****	Transcription elongation factor Spt5 LENGTH=989	IPR008991 (Translation protein SH3-like domain), IPR017071 (Transcription elongation factor Spt5)	GO:0006355 (regulation of transcription, DNA-templated), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0032784 (regulation of DNA-templated transcription, elongation)
Niben101Scf02526g02006.1	sp|Q55FS2|STK4L_DICDI	*-**	Serine/threonine-protein kinase 4 homolog B	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04563g01014.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf04804g00001.1	sp|Q5RCZ2|CY561_PONAB	--*-	Cytochrome b561	IPR006593 (Cytochrome b561/ferric reductase transmembrane), IPR008011 (Complex 1 LYR protein)	
Niben101Scf00388g03005.1	gb|EMT32096.1|	*-*-	AP2-like ethylene-responsive transcription factor ANT [Aegilops tauschii]		
Niben101Scf05674g06005.1	sp|P13798|ACPH_HUMAN	--*-	Acylamino-acid-releasing enzyme	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf10314g04002.1	sp|Q9SYH2|TAF9_ARATH	****	Transcription initiation factor TFIID subunit 9	IPR003162 (Transcription initiation factor TAFII31), IPR009072 (Histone-fold)	GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity)
Niben101Scf08126g00013.1			Unknown protein		
Niben101Scf01249g01003.1	sp|Q9SCX8|PPA17_ARATH	*-*-	Purple acid phosphatase 17	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf07691g00009.1	sp|Q07271|RPOM_SULAC	****	DNA-directed RNA polymerase subunit M	IPR001222 (Zinc finger, TFIIS-type), IPR001529 (DNA-directed RNA polymerase, M/15kDa subunit)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf12725g00026.1	sp|P56601|PPOX_MYXXA	****	Protoporphyrinogen oxidase	IPR004572 (Protoporphyrinogen oxidase), IPR027418 (Protoporphyrinogen oxidase, C-terminal domain)	GO:0004729 (oxygen-dependent protoporphyrinogen oxidase activity), GO:0006779 (porphyrin-containing compound biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02197g01014.1	AT1G77470.1	****	replication factor C subunit 3 LENGTH=369	IPR003959 (ATPase, AAA-type, core), IPR008921 (DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006260 (DNA replication)
Niben101Scf13934g00012.1	AT4G17486.1	***-	PPPDE putative thiol peptidase family protein LENGTH=224	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf04549g10018.1	sp|A1SJA2|PDXT_NOCSJ	--**	Glutamine amidotransferase subunit PdxT	IPR002161 (PdxT/SNO family), IPR029062 (Class I glutamine amidotransferase-like)	GO:0006543 (glutamine catabolic process), GO:0016740 (transferase activity), GO:0042823 (pyridoxal phosphate biosynthetic process)
Niben101Scf19143g00008.1	sp|A8AL14|FIEF_CITK8	****	Cation-efflux pump FieF	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain), IPR027470 (Cation efflux protein cytoplasmic domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf13676g01003.1			Unknown protein		
Niben101Scf27908g01002.1	sp|Q8GXT3|BH123_ARATH	*-*-	Transcription factor bHLH123	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Ctg12790g00002.1	AT2G36210.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02115g05022.1	sp|A6QL92|S35F5_BOVIN	***-	Solute carrier family 35 member F5	IPR000620 (EamA domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf00397g11002.1	sp|D3ZF42|SENP7_RAT	*-*-	Sentrin-specific protease 7	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf03670g02001.1	ref|XP_007027502.1|	--*-	Tudor/PWWP/MBT superfamily protein, putative isoform 3 [Theobroma cacao] gb|EOY08004.1| Tudor/PWWP/MBT superfamily protein, putative isoform 3 [Theobroma cacao]		
Niben101Scf00724g00001.1	sp|Q9LDE3|FBK9_ARATH	***-	F-box/kelch-repeat protein	IPR001810 (F-box domain), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf05124g01001.1	AT2G04220.1	***-	Plant protein of unknown function (DUF868) LENGTH=307	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf00876g02012.1	sp|Q93ZR6|WSD1_ARATH	--**	O-acyltransferase WSD1	IPR009721 (O-acyltransferase, WSD1, C-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity)
Niben101Scf01526g10006.1	sp|Q6LA43|APRR2_ARATH	***-	Two-component response regulator-like APRR2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00034g04023.1	AT4G37220.1	***-	Cold acclimation protein WCOR413 family LENGTH=202	IPR008892 (Cold acclimation WCOR413)	
Niben101Ctg07676g00002.1	AT5G48170.1	***-	F-box family protein LENGTH=157	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf07199g01009.1	AT3G45050.2	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=158		
Niben101Scf08285g00005.1	sp|Q96MT1|RN145_HUMAN	*-*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01983g06001.1	sp|P0C7J0|RMLB_XANCP	*-*-	dTDP-glucose 4,6-dehydratase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain), IPR029903 (RmlD-like substrate binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf07850g07005.1	sp|Q8S8U7|NU4C_ATRBE	*-*-	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit), IPR011685 (LETM1-like)	
Niben101Scf34724g00003.1	AT2G28690.1	***-	Protein of unknown function (DUF1635) LENGTH=231	IPR012862 (Protein of unknown function DUF1635)	
Niben101Scf00945g00006.1	sp|P13284|GILT_HUMAN	*-*-	Gamma-interferon-inducible lysosomal thiol reductase	IPR004911 (Gamma interferon inducible lysosomal thiol reductase GILT)	
Niben101Scf08211g03014.1	AT5G65590.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=316	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01460g00010.1	sp|Q9C9F5|C3H15_ARATH	***-	Zinc finger CCCH domain-containing protein 15	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf08294g04003.1	sp|P25249|CYSP1_HORVU	*-**	Cysteine proteinase EP-B 1	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf02827g08003.1	sp|Q940P5|TET19_ARATH	***-	Tetraspanin-19	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf02440g01036.1	sp|Q9LSQ6|PBP1_ARATH	*-**	Calcium-binding protein PBP1	IPR011992 (EF-hand domain pair), IPR012336 (Thioredoxin-like fold)	GO:0005509 (calcium ion binding)
Niben101Scf00176g09012.1	sp|O49436|PP327_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03657g04006.1	emb|CDX94387.1|	*-*-	BnaC01g17970D [Brassica napus]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf01980g12006.1			Unknown protein		
Niben101Scf02401g01001.1	sp|Q61011|GBB3_MOUSE	****	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf09025g02026.1	sp|O23034|UBA5_ARATH	***-	Ubiquitin-like modifier-activating enzyme 5	IPR016040 (NAD(P)-binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1)	GO:0003824 (catalytic activity)
Niben101Scf04091g00013.1	AT4G27670.1	*-*-	heat shock protein 21 LENGTH=227	IPR008978 (HSP20-like chaperone)	
Niben101Scf01374g06016.1	sp|Q6P6X9|NUP53_DANRE	*-*-	Nucleoporin NUP53	IPR007846 (RNA-recognition motif (RRM) Nup35-type domain), IPR017389 (Nucleoporin, NUP53)	GO:0031965 (nuclear membrane), GO:0055085 (transmembrane transport)
Niben101Scf16098g00006.1	sp|O74427|URK1_SCHPO	*-**	Uridine kinase	IPR000764 (Uridine kinase like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016301 (kinase activity)
Niben101Scf17472g00002.1			Unknown protein		
Niben101Scf00096g03005.1	gb|AEY70471.1|	--*-	plastid lipid-associated protein [Vitis pseudoreticulata]		
Niben101Scf05404g01002.1	sp|Q39265|ZFP6_ARATH	--*-	Zinc finger protein 6	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf03747g04004.1	sp|Q9FJX3|VDAC2_ARATH	****	Mitochondrial outer membrane protein porin 2	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0055085 (transmembrane transport)
Niben101Scf02819g01005.1	sp|Q9SSC9|AHP6_ARATH	***-	Histidine-containing phosphotransfer protein 6	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity)
Niben101Scf12498g00022.1	AT1G29500.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03150g04006.1	emb|CAD29727.1|	*-*-	hero resistance protein 3 homologue [Solanum lycopersicum]		
Niben101Scf09005g01010.1	sp|O65888|NLTP_STRHE	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf16022g04001.1	sp|Q5BJQ2|FA63A_RAT	*-*-	Protein FAM63A	IPR007518 (Protein of unknown function DUF544)	
Niben101Scf00705g03022.1	sp|B8J992|FTSH_ANAD2	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01938g02002.1	sp|Q9FYE2|PKS4_ARATH	*-*-	Protein PHYTOCHROME KINASE SUBSTRATE 4		
Niben101Scf00795g00010.1	ref|XP_007022254.1|	***-	2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 2 [Theobroma cacao] gb|EOY13779.1| 2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 2 [Theobroma cacao]	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf00815g00011.1	sp|O48700|PUB6_ARATH	***-	U-box domain-containing protein 6	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf18356g00006.1			Unknown protein		
Niben101Scf03031g02018.1	sp|Q9LDU6|ST7R_ARATH	****	7-dehydrocholesterol reductase	IPR001171 (Ergosterol biosynthesis ERG4/ERG24)	GO:0016020 (membrane), GO:0016628 (oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf16152g00011.1	emb|CDY60739.1|	***-	BnaA07g35980D [Brassica napus]	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf05506g09008.1	AT5G02460.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=399	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07375g01013.1	gb|KFB82670.1|	*-*-	alkyl hydroperoxide reductase [Calothrix sp. 336/3]	IPR012336 (Thioredoxin-like fold)	
Niben101Scf07008g03018.1	sp|O49621|MLO1_ARATH	***-	MLO-like protein 1	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf01489g00004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf22800g00005.1	sp|Q7WTR3|MDTK_ERWAM	*-*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01076g04002.1	sp|Q59VN2|H31_CANAL	***-	Histone H3.1/H3.2	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf11906g00004.1	sp|A7RK30|QORL2_NEMVE	****	Quinone oxidoreductase-like protein 2 homolog	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Ctg15178g00002.1	sp|Q9Y5V0|ZN706_HUMAN	--*-	Zinc finger protein 706	IPR026939 (At2g23090 like)	
Niben101Ctg02216g00001.1	sp|Q9SJM0|CALSA_ARATH	*-*-	Callose synthase 10		
Niben101Scf06158g01001.1	sp|Q8VYE4|PTR12_ARATH	***-	Protein NRT1/ PTR FAMILY 4.5	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00674g00009.1	AT5G66200.1	***-	armadillo repeat only 2 LENGTH=651	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf09112g02009.1			Unknown protein	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf00741g01033.1	sp|F4JP36|HAP2_ARATH	*-*-	Protein HAPLESS 2		
Niben101Scf01447g01009.1	AT5G25170.1	***-	PPPDE putative thiol peptidase family protein LENGTH=218	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf00378g04001.1	gb|AAS13376.1|	--*-	cyclin-dependent kinase inhibitor 2;1 [Glycine max]		
Niben101Ctg05650g00003.1	sp|Q9FRH7|TLP10_ARATH	*-*-	Tubby-like F-box protein 10	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf00446g05004.1	sp|Q9LXD8|HEC3_ARATH	*-*-	Transcription factor HEC3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01948g00019.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf06435g01004.1			Unknown protein		
Niben101Scf03944g02010.1			Unknown protein		
Niben101Scf05506g02001.1	sp|Q9SR97|YIPL1_ARATH	--*-	Protein yippee-like		
Niben101Scf36745g00002.1			Unknown protein		
Niben101Scf02972g02006.1	tpg|DAA49180.1|	***-	TPA: hypothetical protein ZEAMMB73_191777 [Zea mays]		
Niben101Scf00752g02006.1			Unknown protein		
Niben101Scf13776g00013.1	sp|Q9C9A6|PUB10_ARATH	***-	U-box domain-containing protein 10	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf00674g06001.1	sp|P55034|PSMD4_ARATH	****	26S proteasome non-ATPase regulatory subunit 4 homolog	IPR002035 (von Willebrand factor, type A), IPR003903 (Ubiquitin interacting motif), IPR027040 (Proteasome subunit Rpn10)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0008540 (proteasome regulatory particle, base subcomplex)
Niben101Scf09089g01019.1	emb|CDX75803.1|	***-	BnaC03g38860D [Brassica napus]	IPR007608 (Senescence regulator S40)	
Niben101Scf12205g03026.1	AT5G36130.1	***-	Cytochrome P450 superfamily protein LENGTH=140	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00503g08010.1	sp|B9DWL2|RNPH_CLOK1	***-	Ribonuclease PH	IPR015847 (Exoribonuclease, phosphorolytic domain 2), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027408 (PNPase/RNase PH domain)	
Niben101Scf14516g00011.1	ref|XP_002532684.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29697.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01628g00015.1	sp|Q9K3T2|TAM_STRCO	--*-	Trans-aconitate 2-methyltransferase		
Niben101Scf06770g00009.1	sp|Q9G3M2|CYB_ACIPE	***-	Cytochrome b	IPR001209 (Ribosomal protein S14), IPR005798 (Cytochrome b/b6, C-terminal), IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf11689g00010.1	emb|CDY27351.1|	*-*-	BnaC04g50540D [Brassica napus]	IPR022212 (Protein of unknown function DUF3741), IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf09315g01017.1	AT1G80690.1	***-	PPPDE putative thiol peptidase family protein LENGTH=227	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf05705g00008.1	AT2G19385.1	***-	zinc ion binding LENGTH=275		
Niben101Scf07247g05005.1	AT1G28280.1	***-	VQ motif-containing protein LENGTH=247	IPR008889 (VQ)	
Niben101Scf07352g00001.1	AT3G14940.1	*-**	phosphoenolpyruvate carboxylase 3 LENGTH=968	IPR021135 (Phosphoenolpyruvate carboxylase)	GO:0003824 (catalytic activity), GO:0006099 (tricarboxylic acid cycle), GO:0008964 (phosphoenolpyruvate carboxylase activity), GO:0015977 (carbon fixation)
Niben101Scf00853g00011.1	sp|Q2JM48|RL7_SYNJB	*-*-	50S ribosomal protein L7/L12	IPR000206 (Ribosomal protein L7/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04143g01004.1	sp|Q9FME8|OPT4_ARATH	***-	Oligopeptide transporter 4	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Ctg15092g00001.1			Unknown protein		
Niben101Scf05108g01001.1	ref|XP_003601496.1|	***-	Membrane protein, putative [Medicago truncatula]		
Niben101Scf00369g05010.1	sp|Q948T9|RBOHB_SOLTU	****	Respiratory burst oxidase homolog protein B	IPR000778 (Cytochrome b245, heavy chain), IPR011992 (EF-hand domain pair), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0004601 (peroxidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane), GO:0016174 (NAD(P)H oxidase activity), GO:0016491 (oxidoreductase activity), GO:0050664 (oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf05434g00017.1	AT1G53510.1	*-**	mitogen-activated protein kinase 18 LENGTH=615	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00704g01012.1	sp|O64780|Y1614_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain)	GO:0048544 (recognition of pollen)
Niben101Scf01785g04010.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf02430g04005.1	sp|Q84TX2|SCRL1_ORYSJ	*-*-	SCAR-like protein 1	IPR003124 (WH2 domain), IPR028288 (SCAR/WAVE family)	GO:0003779 (actin binding), GO:0005856 (cytoskeleton), GO:0030036 (actin cytoskeleton organization)
Niben101Scf12639g01004.1	sp|Q7M443|CHIT2_TULBA	***-	Chitinase 2	IPR017853 (Glycoside hydrolase superfamily)	
Niben101Scf09817g02004.1	sp|P83947|PME1_FICPW	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf06770g00005.1	emb|CCQ71680.1|	*-*-	Ycf1 (chloroplast) [Salvia miltiorrhiza]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf03150g04008.1	emb|CAD29727.1|	***-	hero resistance protein 3 homologue [Solanum lycopersicum]		
Niben101Scf01333g00001.1	sp|O48837|LRKS2_ARATH	****	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06441g00015.1	emb|CDX97947.1|	***-	BnaA06g06980D [Brassica napus]		
Niben101Scf13643g01002.1	emb|CDY37414.1|	***-	BnaC08g45520D [Brassica napus]		
Niben101Scf05246g03009.1	sp|Q9ZW88|FBL34_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00887g05007.1	sp|A1XQR9|RUXE_PIG	***-	Small nuclear ribonucleoprotein E	IPR010920 (Like-Sm (LSM) domain), IPR027078 (Small nuclear ribonucleoprotein E)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf02622g12004.1	ref|XP_003599949.1|	--**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf01745g05007.1	sp|O16102|CHD3_DROME	*-**	Chromodomain-helicase-DNA-binding protein 3	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf00220g05004.1	AT1G79900.1	***-	Mitochondrial substrate carrier family protein LENGTH=296	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf09598g00001.1			Unknown protein		
Niben101Scf03849g00017.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf09649g01002.1	sp|Q9SQI2|GIGAN_ARATH	*-*-	Protein GIGANTEA		
Niben101Scf07563g00009.1	AT4G34190.1	***-	stress enhanced protein 1 LENGTH=146	IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf01993g00001.1	sp|Q91W82|UB2E2_MOUSE	*-*-	Ubiquitin-conjugating enzyme E2 E2	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf01731g03006.1	gb|AAW28576.2|	--*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf04122g05012.1	gb|EMT72836.1|	--*-	Killer toxin subunits alpha/beta [Fusarium oxysporum f. sp. cubense race 4]	IPR018392 (LysM domain)	
Niben101Scf07509g01008.1	sp|O49404|BEH3_ARATH	--*-	BES1/BZR1 homolog protein 3	IPR008540 (BZR1, transcriptional repressor)	
Niben101Scf10557g01002.1	AT3G56240.1	***-	copper chaperone LENGTH=121	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf05035g00012.1	AT2G19170.1	*-**	subtilisin-like serine protease 3 LENGTH=815	IPR015500 (Peptidase S8, subtilisin-related), IPR023827 (Peptidase S8, subtilisin,  Asp-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf12360g00017.1	sp|O54439|ACP1_PSEAE	*-*-	Acyl carrier protein 1	IPR003231 (Acyl carrier protein (ACP)), IPR009081 (Acyl carrier protein-like)	GO:0006633 (fatty acid biosynthetic process)
Niben101Scf01090g04018.1	sp|Q9XHP0|11S2_SESIN	***-	11S globulin seed storage protein 2	IPR006044 (11-S seed storage protein, plant)	GO:0045735 (nutrient reservoir activity)
Niben101Scf02318g06017.1	sp|D0LWB8|FTSH_HALO1	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf12266g02001.1			Unknown protein		
Niben101Scf01066g02004.1			Unknown protein		
Niben101Scf06462g01001.1	sp|Q56WM6|ROGFE_ARATH	****	Rop guanine nucleotide exchange factor 14	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf14662g01003.1			Unknown protein		
Niben101Scf17221g00007.1	sp|P59277|SYP81_ARATH	***-	Syntaxin-81	IPR010989 (t-SNARE), IPR019529 (SNARE-complex protein Syntaxin-18 N-terminal)	GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf14526g02013.1	sp|P81898|PNAA_PRUDU	***-	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A	IPR021102 (Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A)	
Niben101Scf05227g01001.1	emb|CDX88033.1|	--*-	BnaA06g26240D [Brassica napus]		
Niben101Scf02831g02022.1	sp|Q9LNQ1|TI231_ARATH	***-	Mitochondrial import inner membrane translocase subunit TIM23-1	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Scf04481g00023.1	sp|Q38890|GUN25_ARATH	***-	Endoglucanase 25	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00854g07039.1	ref|NP_063977.1|	*-*-	orf146 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] ref|YP_004222306.1| hypothetical protein BevumaM_p071 [Beta vulgaris subsp. maritima] dbj|BAA99289.1| orf146 [Beta vulgaris subsp. vulgaris] emb|CBJ14042.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBJ17533.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBL54124.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp. maritima]		
Niben101Scf02456g00008.1	sp|Q94C77|RPKL_ARATH	*-**	Receptor protein kinase-like protein	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00747g02032.1	sp|Q9FNA9|PDAT1_ARATH	*-*-	Phospholipid:diacylglycerol acyltransferase 1		
Niben101Scf01517g08038.1	AT1G06510.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 376 Blast hits to 369 proteins in 152 species: Archae - 5; Bacteria - 113; Metazoa - 105; Fungi - 46; Plants - 27; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink). LENGTH=277		
Niben101Scf01065g02002.1			Unknown protein		
Niben101Scf07508g00001.1	gb|KEH30040.1|	*-*-	vacuolar fusion MON1-like protein [Medicago truncatula]		
Niben101Scf03535g01023.1	sp|Q07DZ5|CTTB2_ORNAN	--*-	Cortactin-binding protein 2		
Niben101Scf15049g00024.1	sp|Q8L7L1|SPHK1_ARATH	*-**	Sphingosine kinase 1	IPR001206 (Diacylglycerol kinase, catalytic domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf01812g05008.1	sp|Q8VHH5|AGAP3_MOUSE	*-**	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3	IPR001164 (Arf GTPase activating protein)	GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf06851g00007.1			Unknown protein		
Niben101Scf01147g04006.1			Unknown protein		
Niben101Scf10196g01008.1			Unknown protein		
Niben101Scf00941g03001.1	AT5G64950.1	****	Mitochondrial transcription termination factor family protein LENGTH=391	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf19143g00006.1	sp|Q10PP8|MTP4_ORYSJ	--*-	Metal tolerance protein 4		
Niben101Scf01506g04006.1	sp|Q27965|HS71B_BOVIN	***-	Heat shock 70 kDa protein 1B	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain)	
Niben101Scf25394g01004.1	gb|KEH17052.1|	***-	F-box/RNI/FBD-like domain protein [Medicago truncatula]		
Niben101Scf05948g02002.1	sp|Q9PTJ6|CTDSL_CHICK	*-**	CTD small phosphatase-like protein	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding), GO:0016791 (phosphatase activity)
Niben101Scf29262g00001.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf04011g00009.1	sp|O66442|ARGD_AQUAE	***-	Acetylornithine aminotransferase	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00568g04007.1	sp|P56764|RPOC2_ARATH	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf05702g02005.1	ref|NP_038521.1|	*-**	cellular nucleic acid-binding protein isoform 1 [Mus musculus] ref|NP_001120665.1| cellular nucleic acid-binding protein isoform 2 [Homo sapiens] ref|NP_001266806.1| CCHC-type zinc finger, nucleic acid binding protein [Heterocephalus glaber] ref|XP_003796581.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 1 [Otolemur garnettii] ref|XP_003796582.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 2 [Otolemur garnettii] ref|XP_003796583.1| PREDICTED: cellular nucleic acid-binding protein-like isoform 3 [Otolemur garnettii] ref|XP_004475997.1| PREDICTED: cellular nucleic acid-binding protein isoform 1 [Dasypus novemcinctus] ref|XP_005000412.1| PREDICTED: cellular nucleic acid-binding protein isoform X2 [Cavia porcellus] ref|XP_005071191.1| PREDICTED: cellular nucleic acid-binding protein isoform X4 [Mesocricetus auratus] ref|XP_005364884.1| PREDICTED: cellular nucleic acid-binding protein isoform X1 [Microtus ochrogaster] ref|XP_005364889.1| PREDICTED: cellular nucleic acid-binding protein isoform X6 [Microtus ochrogaster] ref|XP_005571792.1| PREDICTED: cellular nucleic acid-binding protein isoform X1 [Macaca fascicularis] ref|XP_005600394.1| PREDICTED: cellular nucleic acid-binding protein isoform X3 [Equus caballus] ref|XP_005632079.1| PREDICTED: cellular nucleic acid-binding protein isoform X1 [Canis lupus familiaris] ref|XP_005632080.1| PREDICTED: cellular nucleic acid-binding protein isoform X2 [Canis lupus familiaris] ref|XP_005871513.1| PREDICTED: cellular nucleic acid-binding protein isoform X1 [Myotis brandtii] ref|XP_006091378.1| PREDICTED: cellular nucleic acid-binding protein isoform X1 [Myotis lucifugus] ref|XP_006772561.1| PREDICTED: cellular nucleic acid-binding protein isoform X4 [Myotis davidii] ref|XP_006909105.1| PREDICTED: cellular nucleic acid-binding protein isoform X1 [Pteropus alecto] ref|XP_006078915.1| PREDICTED: cellular nucleic acid-binding protein isoform X1 [Bubalus bubalis] ref|XP_007642354.1| PREDICTED: cellular nucleic acid-binding protein isoform X2 [Cricetulus griseus] ref|XP_007622760.1| PREDICTED: cellular nucleic acid-binding protein isoform X2 [Cricetulus griseus] ref|XP_007983591.1| PREDICTED: cellular nucleic acid-binding protein isoform X1 [Chlorocebus sabaeus] ref|XP_008258557.1| PREDICTED: cellular nucleic acid-binding protein isoform X1 [Oryctolagus cuniculus] ref|XP_008539430.1| PREDICTED: cellular nucleic acid-binding protein isoform X1 [Equus przewalskii] ref|XP_008696041.1| PREDICTED: cellular nucleic acid-binding protein isoform X1 [Ursus maritimus] ref|XP_008980478.1| PREDICTED: cellular nucleic acid-binding protein isoform X1 [Callithrix jacchus] ref|XP_009179598.1| PREDICTED: cellular nucleic acid-binding protein isoform X1 [Papio anubis] ref|XP_009179599.1| PREDICTED: cellular nucleic acid-binding protein isoform X1 [Papio anubis] RecName: Full=Cellular nucleic acid-binding protein; Short=CNBP; AltName: Full=Zinc finger protein 9 [Mus musculus] gb|AAB60490.1| cellular nucleic acid binding protein [Mus musculus] gb|AAO31613.1| cellular nucleic acid binding protein [Mus musculus] gb|AAH58723.1| Cellular nucleic acid binding protein [Mus musculus] gb|AAR89463.1| cellular nucleic acid binding protein [Mus musculus] gb|AAV38419.1| zinc finger protein 9 (a cellular retroviral nucleic acid binding protein) [Homo sapiens] gb|AAY89856.1| cellular nucleic acid binding protein alpha variant 1 [Homo sapiens] dbj|BAE26042.1| unnamed protein product [Mus musculus] dbj|BAE35390.1| unnamed protein product [Mus musculus] gb|ADP20518.1| cellular nucleic acid binding protein [Heterocephalus glaber]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf13776g01017.1	AT1G23000.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=358	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf14536g00005.1	AT3G20610.1	***-	non-race specific disease resistance protein, putative LENGTH=222		
Niben101Scf04617g00010.1	gb|AHF63750.1|	*-*-	transcription-repair coupling factor [Synechococcus sp. WH 8109]	IPR001650 (Helicase, C-terminal), IPR003711 (CarD-like/TRCF domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf00332g00007.1	sp|B7L8C0|GPPA_ECO55	***-	Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase	IPR003695 (Ppx/GppA phosphatase)	
Niben101Scf02429g07015.1	ref|XP_010091358.1|	*-*-	Penicillin-binding protein 1A [Morus notabilis] gb|EXB44348.1| Penicillin-binding protein 1A [Morus notabilis]		
Niben101Scf13741g04013.1	gb|ACG40676.1|	***-	p8MTCP1 [Zea mays]	IPR009069 (Cysteine alpha-hairpin motif superfamily), IPR010625 (CHCH)	
Niben101Scf05009g00001.1	sp|Q9FK27|FB342_ARATH	--*-	F-box protein	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05948g06008.1	AT1G53400.1	***-	Ubiquitin domain-containing protein LENGTH=114		
Niben101Scf02798g00018.1	sp|Q8H8V7|AB5G_ORYSJ	*-*-	ABC transporter G family member 5	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02407g02001.1	AT5G51160.1	***-	Ankyrin repeat family protein LENGTH=442	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	GO:0005515 (protein binding)
Niben101Scf00653g00001.1	AT5G23520.1	***-	smr (Small MutS Related) domain-containing protein LENGTH=435	IPR002625 (Smr protein/MutS2 C-terminal)	
Niben101Scf07741g05011.1	gb|KEH16365.1|	*-*-	mitovirus RNA-dependent RNA polymerase [Medicago truncatula]		
Niben101Scf05269g02006.1	AT5G64970.1	***-	Mitochondrial substrate carrier family protein LENGTH=428	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf17973g00013.1	sp|Q9FN32|YIPL7_ARATH	***-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf01436g03010.1	sp|Q5Z1Q5|RS5_NOCFA	*-**	30S ribosomal protein S5	IPR000851 (Ribosomal protein S5), IPR014720 (Double-stranded RNA-binding domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf04156g01028.1	ref|WP_026721373.1|	***-	molecular chaperone DnaJ [Fischerella sp. PCC 9431]	IPR021788 (Protein of unknown function DUF3353)	
Niben101Ctg14136g00001.1	AT2G39980.1	****	HXXXD-type acyl-transferase family protein LENGTH=482	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf24758g01007.1	ref|NP_563722.1|	--*-	hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]	IPR028226 (Protein LIN37)	GO:0007049 (cell cycle), GO:0017053 (transcriptional repressor complex)
Niben101Scf11922g01009.1	AT5G19900.1	*-*-	PRLI-interacting factor, putative LENGTH=494		
Niben101Scf02674g00001.1	sp|Q1J4Z3|DEOC_STRPF	--*-	Deoxyribose-phosphate aldolase		
Niben101Scf07663g04003.1	AT4G00730.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=802	IPR002913 (START domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf06435g01006.1	ref|YP_006666001.1|	*-*-	rib small subunit 4 (mitochondrion) [Raphanus sativus]	IPR022801 (Ribosomal protein S4/S9)	
Niben101Scf02026g11006.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00965g02014.1	sp|P50699|TLPH_ARATH	*-*-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf18001g00008.1	gb|AAV68619.1|	***-	anaphase promoting complex subunit 8/cell division cycle protein 23-like protein, partial [Ostreococcus tauri]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00487g02001.1	AT5G12470.1	*-*-	Protein of unknown function (DUF3411) LENGTH=386	IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf01494g15008.1	emb|CDY41011.1|	***-	BnaC05g14690D [Brassica napus]		
Niben101Scf00704g02008.1	sp|Q0WNJ6|CLAH1_ARATH	--*-	Clathrin heavy chain 1		
Niben101Scf02307g00012.1	sp|Q9C8E7|GLR33_ARATH	****	Glutamate receptor 3.3	IPR017103 (Ionotropic glutamate receptor, plant), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf00487g00007.1	ref|NP_001233978.1|	*-*-	extensin-like protein Dif54 precursor [Solanum lycopersicum] emb|CAA67814.1| extensin-like protein Dif54 [Solanum lycopersicum]		
Niben101Scf02700g01011.1	sp|Q5SPX3|RN215_MOUSE	*-*-	RING finger protein 215	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf10152g04001.1	AT1G48480.1	*-**	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07002g00015.1	sp|Q9V464|ASF1_DROME	***-	Histone chaperone asf1	IPR006818 (Histone chaperone, ASF1-like)	GO:0005634 (nucleus), GO:0006333 (chromatin assembly or disassembly)
Niben101Scf02243g01029.1	sp|Q93XX8|NOP10_ARATH	****	H/ACA ribonucleoprotein complex subunit 3-like protein	IPR007264 (H/ACA ribonucleoprotein complex, subunit Nop10)	GO:0001522 (pseudouridine synthesis), GO:0030515 (snoRNA binding), GO:0042254 (ribosome biogenesis), GO:0072588 (box H/ACA RNP complex)
Niben101Scf00317g06018.1	sp|P40855|PEX19_HUMAN	*-*-	Peroxisomal biogenesis factor 19	IPR006708 (Pex19 protein)	GO:0005777 (peroxisome)
Niben101Scf01148g00007.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00542g07010.1			Unknown protein		
Niben101Scf02290g05024.1	AT5G53450.1	***-	OBP3-responsive gene 1 LENGTH=670		
Niben101Scf04825g00001.1	sp|Q1MIC5|RL18_RHIL3	-**-	50S ribosomal protein L18	IPR005484 (Ribosomal protein L18/L5)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02877g02005.1	sp|P94111|STS1_ARATH	****	Strictosidine synthase 1	IPR004141 (Strictosidine synthase)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf06221g01005.1	AT3G23170.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=107		
Niben101Scf08785g01001.1	emb|CDY17236.1|	***-	BnaA05g09520D [Brassica napus]	IPR007608 (Senescence regulator S40)	
Niben101Scf01511g00021.1			Unknown protein		
Niben101Scf01586g01010.1	sp|Q9BTT6|LRRC1_HUMAN	*-*-	Leucine-rich repeat-containing protein 1	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf09116g00006.1	emb|CDY57158.1|	*-*-	BnaC05g50400D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf05374g03003.1	sp|Q0P5J9|RPR1A_BOVIN	*-*-	Regulation of nuclear pre-mRNA domain-containing protein 1A	IPR006569 (CID domain), IPR008942 (ENTH/VHS)	
Niben101Scf05425g00015.1	emb|CDY45481.1|	*-*-	BnaCnng12400D [Brassica napus]		
Niben101Scf00508g10011.1	sp|Q8RU31|MAD21_ORYSJ	*-*-	MADS-box transcription factor 21	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf04926g04006.1	sp|Q885L1|PHS_PSESM	****	Pterin-4-alpha-carbinolamine dehydratase	IPR001533 (Transcriptional coactivator/pterin dehydratase)	GO:0006729 (tetrahydrobiopterin biosynthetic process), GO:0008124 (4-alpha-hydroxytetrahydrobiopterin dehydratase activity)
Niben101Scf10785g01015.1	sp|Q9M2F1|RS272_ARATH	***-	40S ribosomal protein S27-2	IPR000592 (Ribosomal protein S27e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05671g00040.1	sp|Q7Z5Q5|DPOLN_HUMAN	*-**	DNA polymerase nu	IPR001650 (Helicase, C-terminal), IPR002298 (DNA polymerase A), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0005524 (ATP binding), GO:0006260 (DNA replication), GO:0006261 (DNA-dependent DNA replication)
Niben101Scf04020g06019.1			Unknown protein		
Niben101Scf09116g04018.1	sp|Q54DB1|CM2A2_DICDI	***-	Charged multivesicular body protein 2a homolog 2	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf01018g00007.1	AT3G24820.1	***-	BSD domain-containing protein LENGTH=186	IPR005607 (BSD)	
Niben101Scf15739g03006.1	sp|Q9SDZ9|PPAF2_IPOBA	****	Purple acid phosphatase 2	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf03045g00010.1	sp|Q3T0R4|DRS7B_BOVIN	****	Dehydrogenase/reductase SDR family member 7B	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02425g05006.1	AT5G57070.1	*-*-	hydroxyproline-rich glycoprotein family protein LENGTH=575	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf06200g02003.1	sp|Q688X9|DI191_ORYSJ	***-	Protein DEHYDRATION-INDUCED 19	IPR008598 (Drought induced 19 protein-like, zinc-binding domain), IPR008974 (TRAF-like), IPR027935 (Protein dehydration-induced 19, C-terminal)	GO:0005515 (protein binding)
Niben101Scf03735g06007.1	emb|CDY45222.1|	***-	BnaA07g12680D [Brassica napus]		
Niben101Scf03791g01010.1	sp|Q84X02|FBD7_ARATH	*-*-	FBD-associated F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf09355g00012.1	AT5G26860.1	***-	lon protease 1 LENGTH=940	IPR015947 (PUA-like domain), IPR027065 (Lon protease), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004176 (ATP-dependent peptidase activity), GO:0004252 (serine-type endopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0006515 (misfolded or incompletely synthesized protein catabolic process), GO:0030163 (protein catabolic process)
Niben101Scf02197g01010.1	AT1G77460.1	*-**	Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein LENGTH=2136	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf07766g00016.1	sp|Q9FMV5|NFYC4_ARATH	*-*-	Nuclear transcription factor Y subunit C-4	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf02494g02015.1	AT4G01200.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=250	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf06611g00001.1			Unknown protein		
Niben101Scf04714g03013.1	AT4G16760.1	*-**	acyl-CoA oxidase 1 LENGTH=664	IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal)	GO:0003997 (acyl-CoA oxidase activity), GO:0005777 (peroxisome), GO:0006635 (fatty acid beta-oxidation), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0055114 (oxidation-reduction process)
Niben101Scf21956g00002.1	gb|AFI44275.1|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Silene vulgaris]		
Niben101Scf11604g00012.1	ref|YP_009045810.1|	***-	orf189 (mitochondrion) [Batis maritima] gb|AIC83413.1| orf189 (mitochondrion) [Batis maritima]		
Niben101Scf03491g00002.1	sp|Q8GWP3|COPT6_ARATH	****	Copper transporter 6	IPR007274 (Ctr copper transporter)	GO:0005375 (copper ion transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0035434 (copper ion transmembrane transport)
Niben101Scf00168g09007.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05029g02006.1	AT1G77260.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=655	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Ctg12880g00004.1	ref|XP_007020839.1|	*-*-	F11F12.2 protein, putative [Theobroma cacao] gb|EOY12364.1| F11F12.2 protein, putative [Theobroma cacao]		
Niben101Scf03264g04012.1	AT2G34740.1	***-	Protein phosphatase 2C family protein LENGTH=339	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf00602g01004.1	sp|Q8LGG8|USPAL_ARATH	****	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf02502g07012.1	ref|YP_007353813.1|	--*-	phot Ycf1 (chloroplast) [Chrysanthemum x morifolium]		
Niben101Scf02771g03017.1	AT5G02460.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=399	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11860g00013.1	AT5G10240.1	****	asparagine synthetase 3 LENGTH=578	IPR006426 (Asparagine synthase, glutamine-hydrolyzing), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004066 (asparagine synthase (glutamine-hydrolyzing) activity), GO:0006529 (asparagine biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf00152g16003.1	ref|NP_001148819.1|	***-	cell growth defect factor 2 [Zea mays] gb|ACG33018.1| cell growth defect factor 2 [Zea mays]		
Niben101Scf04391g04001.1	sp|Q07761|RL23A_TOBAC	***-	60S ribosomal protein L23a	IPR005633 (Ribosomal protein L23/L25, N-terminal), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02190g01015.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04327g02027.1	sp|Q0WKZ3|PP105_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01273g01012.1	AT1G67410.1	***-	Exostosin family protein LENGTH=430	IPR004263 (Exostosin-like)	
Niben101Scf12762g00001.1	AT5G40160.1	***-	Ankyrin repeat family protein LENGTH=315	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf04703g08004.1	ref|YP_009045808.1|	***-	orf134 (mitochondrion) [Batis maritima] gb|AIC83411.1| orf134 (mitochondrion) [Batis maritima]		
Niben101Scf06674g05029.1	ref|XP_007032884.1|	***-	Pollen Ole e 1 allergen and extensin family protein [Theobroma cacao] gb|EOY03810.1| Pollen Ole e 1 allergen and extensin family protein [Theobroma cacao]	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf00854g03002.1	ref|XP_002534701.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF27687.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00739g03012.1	emb|CDY38652.1|	***-	BnaC02g23270D [Brassica napus]		
Niben101Scf08690g00003.1	sp|Q9M363|B561I_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf02558g00025.1	sp|Q13573|SNW1_HUMAN	*-*-	SNW domain-containing protein 1	IPR017862 (SKI-interacting protein, SKIP)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf01182g02013.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf01994g00006.1	AT5G12130.1	****	integral membrane TerC family protein LENGTH=384	IPR005496 (Integral membrane protein TerC)	GO:0016021 (integral component of membrane)
Niben101Scf01100g01014.1	sp|A7SXK3|TMED_NEMVE	--*-	Transmembrane emp24 domain-containing protein	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf03977g01014.1	sp|P04161|PUR3_YEAST	--*-	Phosphoribosylglycinamide formyltransferase	IPR002376 (Formyl transferase, N-terminal)	GO:0009058 (biosynthetic process), GO:0016742 (hydroxymethyl-, formyl- and related transferase activity)
Niben101Scf10126g00002.1	AT2G38000.1	***-	chaperone protein dnaJ-related LENGTH=419		
Niben101Scf03659g01002.1	emb|CDX73771.1|	***-	BnaC08g22320D [Brassica napus]		
Niben101Scf02366g02001.1	sp|Q9SCQ7|AN32_ARATH	*-*-	Acidic leucine-rich nuclear phosphoprotein 32-related protein	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf08030g00013.1			Unknown protein		
Niben101Scf00177g08005.1	gb|KEH22373.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00560g06008.1	sp|Q9M0Y1|ENT5_ARATH	*-**	Equilibrative nucleotide transporter 5	IPR002259 (Equilibrative nucleoside transporter)	GO:0005337 (nucleoside transmembrane transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf02030g01004.1	sp|Q9NZ71|RTEL1_HUMAN	****	Regulator of telomere elongation helicase 1	IPR006555 (ATP-dependent helicase, C-terminal), IPR013020 (DNA helicase (DNA repair), Rad3 type), IPR014013 (Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0004003 (ATP-dependent DNA helicase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008026 (ATP-dependent helicase activity), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf01696g04006.1	sp|O24407|IAA16_ARATH	***-	Auxin-responsive protein IAA16	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf02074g04086.1			Unknown protein		
Niben101Scf09808g02022.1	ref|XP_007039624.1|	***-	Pleckstrin (PH) domain-containing protein isoform 1 [Theobroma cacao] gb|EOY24125.1| Pleckstrin (PH) domain-containing protein isoform 1 [Theobroma cacao]	IPR009291 (Vacuolar protein sorting-associated protein 62), IPR010482 (Peroxin/Dysferlin domain), IPR011993 (Pleckstrin homology-like domain), IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf02437g02001.1	sp|Q9FWS3|C3H16_ARATH	*-*-	Zinc finger CCCH domain-containing protein 16		
Niben101Scf00603g00009.1	sp|Q86MW9|SINA_SCHMA	****	E3 ubiquitin-protein ligase sina	IPR004162 (E3 ubiquitin-protein ligase SINA like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf12891g00001.1	sp|Q9LN49|KCS4_ARATH	*-*-	3-ketoacyl-CoA synthase 4	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0016746 (transferase activity, transferring acyl groups), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03437g02045.1	sp|A0JPZ8|AP2L3_ARATH	****	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00170g05003.1			Unknown protein		
Niben101Scf02015g04020.1	ref|NP_001045280.1|	*-*-	product [Oryza sativa Japonica Group]	IPR022227 (Protein of unknown function DUF3754)	
Niben101Scf30979g00004.1	sp|A2AN08|UBR4_MOUSE	*-*-	E3 ubiquitin-protein ligase UBR4		
Niben101Scf03370g07004.1	sp|Q76FS2|TBB8_ORYSJ	***-	Tubulin beta-8 chain	IPR000217 (Tubulin)	GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0007017 (microtubule-based process)
Niben101Scf06793g07011.1	gb|ACX55016.1|	*-*-	pG1 protein [Bacillus amyloliquefaciens]		
Niben101Scf02279g07005.1	sp|Q3KRG3|TSR2_DANRE	*-*-	Pre-rRNA-processing protein TSR2 homolog	IPR019398 (Pre-rRNA-processing protein TSR2)	
Niben101Scf23108g00005.1	sp|P53471|ACT2_SCHMA	***-	Actin-2	IPR004000 (Actin family)	
Niben101Scf11779g00003.1	sp|P30666|MCM3_SCHPO	--**	DNA replication licensing factor mcm3	IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006260 (DNA replication)
Niben101Scf00858g04015.1	ref|XP_002530916.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF31465.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02003g01001.1	sp|Q6ZPJ0|TEX2_MOUSE	*-*-	Testis-expressed sequence 2 protein	IPR019411 (Domain of unknown function DUF2404)	
Niben101Scf14805g04016.1	sp|Q5R7B8|KLH20_PONAB	*-*-	Kelch-like protein 20	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf02606g02003.1	AT1G05840.1	*-*-	Eukaryotic aspartyl protease family protein LENGTH=485	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf10438g01002.1	sp|Q9SJ20|RIR1_ARATH	****	Ribonucleoside-diphosphate reductase large subunit	IPR000788 (Ribonucleotide reductase large subunit, C-terminal), IPR008926 (Ribonucleotide reductase R1 subunit, N-terminal)	GO:0004748 (ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor), GO:0005524 (ATP binding), GO:0006260 (DNA replication), GO:0055114 (oxidation-reduction process)
Niben101Scf00159g03004.1	emb|CDX79492.1|	*-*-	BnaC03g18280D [Brassica napus]		
Niben101Scf03283g04015.1	AT3G57280.1	***-	Transmembrane proteins 14C LENGTH=226	IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane)
Niben101Scf10940g04026.1	sp|P93735|ELIP1_ARATH	***-	Early light-induced protein 1, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf08368g01011.1	AT4G16110.1	*-*-	response regulator 2 LENGTH=664	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily), IPR017053 (Response regulator, plant B-type)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02461g05003.1	sp|Q82SL8|BIOH_NITEU	***-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02929g01013.1	sp|P58311|PSAA_WHEAT	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf08633g00005.1	sp|Q9XIJ5|PUB18_ARATH	***-	U-box domain-containing protein 18	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf06236g03001.1			Unknown protein		
Niben101Scf04612g00001.1			Unknown protein		
Niben101Scf03422g04024.1	sp|A2X0Q6|SPL3_ORYSI	*-**	Squamosa promoter-binding-like protein 3	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf07416g00023.1	sp|Q9SD88|ASTER_ARATH	***-	Protein Asterix	IPR005351 (Uncharacterised protein family UPF0139)	
Niben101Scf03437g00012.1	sp|Q39255|SKP1A_ARATH	***-	SKP1-like protein 1A	IPR016072 (SKP1 component, dimerisation)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf13966g00013.1	AT1G73590.1	***-	Auxin efflux carrier family protein LENGTH=622	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01629g00008.1	sp|Q54BM2|PAP1A_DICDI	*-**	Polyadenylate-binding protein 1-A	IPR002004 (Polyadenylate-binding protein/Hyperplastic disc protein), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf10651g00005.1	sp|B7KL61|DAPAT_CYAP7	*-**	LL-diaminopimelate aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase), IPR019942 (LL-diaminopimelate aminotransferase, plants and Chlamydia type)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0009089 (lysine biosynthetic process via diaminopimelate), GO:0010285 (L,L-diaminopimelate aminotransferase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00572g00003.1	sp|Q9FFR9|CHX18_ARATH	****	Cation/H(+) antiporter 18	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf26911g00002.1	AT4G15830.1	*-*-	ARM repeat superfamily protein LENGTH=296		
Niben101Scf07564g01017.1	AT1G74780.1	***-	Nodulin-like / Major Facilitator Superfamily protein LENGTH=533	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf00914g03006.1	AT3G43120.1	***-	SAUR-like auxin-responsive protein family LENGTH=160	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03208g02007.1	sp|P48638|GSHR_NOSS1	*-**	Glutathione reductase	IPR016156 (FAD/NAD-linked reductase, dimerisation domain)	GO:0016491 (oxidoreductase activity), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf14394g00002.1	sp|Q9SU50|TRE1_ARATH	****	Trehalase	IPR001661 (Glycoside hydrolase, family 37)	GO:0003824 (catalytic activity), GO:0004555 (alpha,alpha-trehalase activity), GO:0005991 (trehalose metabolic process)
Niben101Scf05245g04007.1	sp|Q8W246|ZIP7_ARATH	****	Zinc transporter 7	IPR003689 (Zinc/iron permease)	GO:0005385 (zinc ion transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport), GO:0071577 (zinc ion transmembrane transport)
Niben101Scf06408g03005.1	sp|P45857|ACDB_BACSU	****	Acyl-CoA dehydrogenase	IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain), IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal)	GO:0003995 (acyl-CoA dehydrogenase activity), GO:0008152 (metabolic process), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf32839g00001.1	sp|P30962|CCMC_BRADU	-***	Heme exporter protein C	IPR003557 (Cytochrome c-type biogenesis protein CcmC)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf00321g02011.1	ref|NP_179175.3|	***-	P-loop containing nucle [Arabidopsis thaliana]	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf02115g04005.1	sp|Q9X0N9|G6PD_THEMA	--*-	Glucose-6-phosphate 1-dehydrogenase		
Niben101Scf08294g05006.1	sp|Q9SR40|LAC7_ARATH	***-	Laccase-7	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03236g00004.1	sp|Q9LHF0|ZHD9_ARATH	***-	Zinc-finger homeodomain protein 9	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf01819g02019.1	AT2G02170.1	***-	Remorin family protein LENGTH=486	IPR005516 (Remorin, C-terminal)	
Niben101Ctg10874g00003.1	sp|Q9FKH1|SAP_ARATH	***-	Transcriptional regulator STERILE APETALA	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02831g07012.1	sp|Q6PGE4|ZF316_MOUSE	--*-	Zinc finger protein 316	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01036g08009.1	sp|Q9T076|ENL2_ARATH	*-*-	Early nodulin-like protein 2	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf06698g02003.1	sp|Q8DHG3|SYW_THEEB	****	Tryptophan--tRNA ligase	IPR002305 (Aminoacyl-tRNA synthetase, class Ic)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004830 (tryptophan-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006436 (tryptophanyl-tRNA aminoacylation)
Niben101Scf39139g00001.1	sp|Q9FNX5|DRP1E_ARATH	***-	Dynamin-related protein 1E	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf05306g00012.1	emb|CDX74851.1|	***-	BnaA05g05970D [Brassica napus]		
Niben101Scf03455g01002.1	sp|A6M334|GLGA_CLOB8	****	Glycogen synthase	IPR011835 (Glycogen/starch synthase, ADP-glucose type)	GO:0009011 (starch synthase activity), GO:0009058 (biosynthetic process), GO:0009250 (glucan biosynthetic process)
Niben101Scf02294g03014.1	sp|Q84UU9|TPS06_ARATH	****	Terpenoid synthase 6	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf03634g04009.1	sp|Q2SMS4|METE_HAHCH	****	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	IPR006276 (Cobalamin-independent methionine synthase)	GO:0003871 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity), GO:0008270 (zinc ion binding), GO:0008652 (cellular amino acid biosynthetic process), GO:0009086 (methionine biosynthetic process)
Niben101Scf00298g02010.1	AT3G14080.1	***-	Small nuclear ribonucleoprotein family protein LENGTH=128	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf01451g06003.1	gb|AFI44275.1|	--*-	NADH dehydrogenase subunit 2 (mitochondrion) [Silene vulgaris]		
Niben101Scf08294g07001.1			Unknown protein		
Niben101Scf12382g00017.1	sp|Q03164|KMT2A_HUMAN	*-**	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR003105 (SRA-YDG), IPR003616 (Post-SET domain), IPR007728 (Pre-SET domain), IPR015947 (PUA-like domain), IPR025794 (Histone H3-K9 methyltransferase, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016571 (histone methylation), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0042393 (histone binding)
Niben101Scf10022g00018.1	AT4G35690.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=284	IPR004320 (Protein of unknown function DUF241, plant), IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf07289g00019.1	sp|P93332|NOD3_MEDTR	*-*-	Bidirectional sugar transporter N3		
Niben101Scf04410g08010.1	gb|KEH21697.1|	*-*-	NLI interacting factor-like phosphatase [Medicago truncatula]	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0005515 (protein binding)
Niben101Scf05800g02009.1	ref|XP_003603301.1|	*-*-	Transcription initiation factor TFIID subunit [Medicago truncatula]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf01209g05012.1	AT2G41870.1	***-	Remorin family protein LENGTH=274	IPR005516 (Remorin, C-terminal)	
Niben101Scf04918g08007.1			Unknown protein		
Niben101Scf12320g02003.1	sp|A4QNF3|ROMO1_XENTR	-**-	Reactive oxygen species modulator 1	IPR018450 (Reactive oxygen species modulator 1)	
Niben101Scf08156g06015.1	ref|XP_003078104.1|	*-**	G-patch nucleic acid binding protein (ISS) [Ostreococcus tauri]	IPR000467 (G-patch domain), IPR005824 (KOW)	GO:0003676 (nucleic acid binding)
Niben101Scf03362g02002.1	gb|AAU95247.1|	--*-	R1 [Solanum tuberosum]		
Niben101Scf00793g09013.1	ref|XP_007051123.1|	*-*-	HIT zinc finger,PAPA-1-like conserved region isoform 3 [Theobroma cacao] gb|EOX95280.1| HIT zinc finger,PAPA-1-like conserved region isoform 3 [Theobroma cacao]		
Niben101Scf00895g00002.1	gb|ACE79449.1|	*-*-	NBS-coding resistance gene analog [Nicotiana tabacum]		
Niben101Scf03320g02006.1	sp|Q9SRM9|ALMT8_ARATH	****	Aluminum-activated malate transporter 8	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf06172g03007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05330g03010.1	sp|A0JMV4|RBM5A_XENLA	--**	RNA-binding protein 5-A	IPR002075 (Nuclear transport factor 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf03641g07005.1	sp|Q17TI5|BRX_ARATH	***-	Protein BREVIS RADIX	IPR013591 (Brevis radix (BRX) domain), IPR027988 (Transcription factor  BREVIS RADIX, N-terminal domain)	
Niben101Scf01219g04015.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf02571g03005.1	AT1G74780.1	***-	Nodulin-like / Major Facilitator Superfamily protein LENGTH=533	IPR010658 (Nodulin-like), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02172g06026.1	sp|Q09FS1|RK22_NANDO	*-*-	50S ribosomal protein L22, chloroplastic	IPR001063 (Ribosomal protein L22/L17), IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03779g01011.1	sp|Q8W207|CSN2_ARATH	*-*-	COP9 signalosome complex subunit 2	IPR000717 (Proteasome component (PCI) domain)	GO:0005515 (protein binding)
Niben101Scf06184g00011.1	sp|Q9FMR1|RGAP1_ARATH	*-*-	Rho GTPase-activating protein 1	IPR000095 (CRIB domain)	
Niben101Scf08478g00014.1			Unknown protein		
Niben101Scf08167g05014.1	sp|Q9FZ96|PUP1_ARATH	***-	Purine permease 1	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf04114g00064.1	ref|YP_004927571.1|	*-*-	orf448 (mitochondrion) [Brassica carinata] gb|AEH43586.1| orf448 [Brassica carinata]		
Niben101Scf04024g02026.1	sp|P54086|TATC_SYNY3	***-	Sec-independent protein translocase protein TatC	IPR002033 (Sec-independent periplasmic protein translocase TatC)	GO:0016021 (integral component of membrane)
Niben101Scf09954g00008.1	sp|Q6GL75|DCC1_XENTR	***-	Sister chromatid cohesion protein DCC1	IPR019128 (Sister chromatid cohesion protein Dcc1)	
Niben101Scf34656g00001.1	sp|P05170|PSBE_OENBE	*-*-	Cytochrome b559 subunit alpha	IPR013082 (Photosystem II cytochrome b559, alpha subunit, lumenal region)	GO:0009523 (photosystem II), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf05118g04008.1	sp|Q8SQK9|DHH1_ENCCU	****	ATP-dependent RNA helicase DHH1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf09832g00003.1	sp|Q9S7G7|MB3R1_ARATH	***-	Myb-related protein 3R-1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf12515g00011.1			Unknown protein		
Niben101Scf16221g00003.1			Unknown protein		
Niben101Scf05516g00010.1	AT5G44030.1	****	cellulose synthase A4 LENGTH=1049	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf11009g00002.1	AT3G53320.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=553		
Niben101Scf02544g01006.1	ref|XP_007020806.1|	-**-	SH3 domain-binding protein 1, putative [Theobroma cacao] gb|EOY12331.1| SH3 domain-binding protein 1, putative [Theobroma cacao]		
Niben101Scf01166g14024.1			Unknown protein		
Niben101Scf01851g02001.1	sp|Q9SHV1|GLR22_ARATH	****	Glutamate receptor 2.2	IPR001320 (Ionotropic glutamate receptor), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf05948g04002.1	sp|Q9C7R6|PUB17_ARATH	***-	U-box domain-containing protein 17	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf02408g00020.1	AT3G19240.1	***-	Vacuolar import/degradation, Vid27-related protein LENGTH=648	IPR013863 (Vacuolar import/degradation, Vid27-related), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf11131g00003.1	AT1G52790.1	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=310	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Ctg13350g00001.1	AT4G16210.1	*-*-	enoyl-CoA hydratase/isomerase A LENGTH=265	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04650g00002.1	sp|Q6ID77|MED11_ARATH	****	Mediator of RNA polymerase II transcription subunit 11	IPR019404 (Mediator complex, subunit Med11)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf00328g04015.1	AT2G32090.1	***-	Lactoylglutathione lyase / glyoxalase I family protein LENGTH=135	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf08669g00013.1	sp|Q0WPU1|MYO15_ARATH	*-**	Myosin-15	IPR004009 (Myosin, N-terminal, SH3-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf06236g01012.1			Unknown protein		
Niben101Ctg07326g00002.1	gb|AGT95768.1|	*-*-	maturase, partial (mitochondrion) [Freycinetia sp. RBGB 20080174-10]		
Niben101Scf00546g01001.1	AT2G24100.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=466		
Niben101Scf03793g00005.1	sp|Q6G0S2|RPPH_BARQU	***-	RNA pyrophosphohydrolase	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf00107g03016.1	sp|Q2N5X0|KYNB_ERYLH	****	Kynurenine formamidase	IPR007325 (Kynurenine formamidase)	GO:0004061 (arylformamidase activity), GO:0019441 (tryptophan catabolic process to kynurenine)
Niben101Scf04794g01014.1	sp|Q9LHP4|RCH2_ARATH	--*-	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02085g23009.1	ref|XP_003604519.1|	--*-	Macrophage migration inhibitory factor family protein expressed [Medicago truncatula]	IPR001398 (Macrophage migration inhibitory factor)	
Niben101Scf03028g03019.1	sp|Q3C1H8|PSAA_NICSY	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf11620g00009.1	sp|O61125|STK4_DICDI	****	Serine/threonine-protein kinase 4 homolog A	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07493g03006.1	sp|Q54BM2|PAP1A_DICDI	*-**	Polyadenylate-binding protein 1-A	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00078g02005.1	sp|P41101|RL27_SOLTU	***-	60S ribosomal protein L27	IPR001141 (Ribosomal protein L27e), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03461g04013.1	emb|CDX85253.1|	***-	BnaC07g25640D [Brassica napus]	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf17688g00011.1	sp|Q9UKX7|NUP50_HUMAN	*-*-	Nuclear pore complex protein Nup50	IPR011993 (Pleckstrin homology-like domain)	GO:0046907 (intracellular transport)
Niben101Scf18652g00017.1	ref|XP_002535856.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09596g01004.1	sp|Q9FUR2|IP5P2_ARATH	*-**	Type I inositol 1,4,5-trisphosphate 5-phosphatase 2	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf01781g02005.1	ref|XP_007016476.1|	***-	P-hydroxybenzoic acid efflux pump subunit aaeB [Theobroma cacao] gb|EOY34095.1| P-hydroxybenzoic acid efflux pump subunit aaeB [Theobroma cacao]	IPR006726 (Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein)	GO:0005886 (plasma membrane), GO:0006810 (transport)
Niben101Scf05587g00001.1	AT3G10405.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen development; LOCATED IN: chloroplast; Has 44 Blast hits to 44 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=212		
Niben101Scf10867g00005.1			Unknown protein	IPR028144 (Cysteine-rich transmembrane CYSTM domain)	
Niben101Scf08081g00004.1	sp|Q9LQ81|ADF10_ARATH	****	Actin-depolymerizing factor 10	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf13246g00001.1	gb|AFO69217.1|	*-*-	cytochrome c biogenesis FN (mitochondrion) [Gossypium hirsutum]		
Niben101Scf09505g01021.1	ref|WP_025922422.1|	-**-	MULTISPECIES: hypothetical protein [Prochlorococcus]		
Niben101Scf03208g02006.1	AT3G54660.1	****	glutathione reductase LENGTH=565	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0016668 (oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf07244g00001.1	sp|Q38857|XTH22_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR008264 (Beta-glucanase), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf07564g01018.1	AT3G27090.1	***-	DCD (Development and Cell Death) domain protein LENGTH=296	IPR013989 (Development/cell death domain)	
Niben101Scf28696g00003.1	sp|Q081Q0|SYN_SHEFN	****	Asparagine--tRNA ligase	IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004816 (asparagine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006421 (asparaginyl-tRNA aminoacylation)
Niben101Scf04563g01015.1			Unknown protein		
Niben101Scf02819g01006.1	sp|O96904|TBC12_DICDI	--*-	Drainin		
Niben101Scf03747g04005.1	sp|Q2TAW0|CNDG2_XENLA	*-*-	Condensin-2 complex subunit G2	IPR016024 (Armadillo-type fold), IPR024741 (Condensin-2 complex subunit G2)	GO:0005488 (binding), GO:0005634 (nucleus)
Niben101Scf06350g00001.1	sp|Q9FMY5|U2AFB_ARATH	***-	Splicing factor U2af small subunit B	IPR009145 (U2 auxiliary factor small subunit), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0046872 (metal ion binding)
Niben101Scf03817g15014.1	AT3G22190.1	***-	IQ-domain 5 LENGTH=422	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf05961g03029.1	ref|XP_007049519.1|	*-*-	Mediator of RNA polymerase II transcription subunit 19 [Theobroma cacao] gb|EOX93676.1| Mediator of RNA polymerase II transcription subunit 19 [Theobroma cacao]		
Niben101Scf12919g00036.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02929g01012.1			Unknown protein		
Niben101Scf00486g01003.1	sp|Q9ZPS7|TMN3_ARATH	***-	Transmembrane 9 superfamily member 3	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf11496g02010.1	gb|KEH22373.1|	--*-	DUF4283 domain protein [Medicago truncatula]		
Niben101Scf04081g02015.1	sp|Q43111|PME3_PHAVU	****	Pectinesterase 3	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf03031g02017.1	AT2G27230.1	*-*-	transcription factor-related LENGTH=650	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf00439g10048.1	AT4G22740.1	***-	glycine-rich protein LENGTH=356		
Niben101Scf02839g03013.1	sp|O35685|NUDC_MOUSE	*-*-	Nuclear migration protein nudC	IPR008978 (HSP20-like chaperone)	
Niben101Scf03050g03006.1	sp|O65685|BLH6_ARATH	***-	BEL1-like homeodomain protein 6	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02929g04031.1	sp|Q6BDG1|MATK_KETDA	--*-	Maturase K	IPR024937 (Domain X)	GO:0006397 (mRNA processing)
Niben101Scf05399g00002.1	emb|CAJ32468.1|	*-*-	RNA-dependent RNA polymerase [Ophiostoma mitovirus 3b]	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf00457g05004.1	sp|Q42430|ZFP1_WHEAT	***-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf01611g07010.1	AT4G32810.1	***-	carotenoid cleavage dioxygenase 8 LENGTH=570	IPR004294 (Carotenoid oxygenase)	
Niben101Scf09018g00001.1	sp|Q3C1H3|ATPF_NICSY	***-	ATP synthase subunit b, chloroplastic		
Niben101Scf01785g03012.1	gb|KEH20704.1|	*-*-	Pre-mRNA-processing factor 39, putative [Medicago truncatula]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08355g04022.1	sp|Q9C778|ELP4_ARATH	*-**	Elongator complex protein 4	IPR008728 (Elongator complex protein 4), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0033588 (Elongator holoenzyme complex)
Niben101Scf15965g00004.1	sp|Q42920|PME_MEDSA	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01983g02010.1	sp|P36945|RBSK_BACSU	*-**	Ribokinase	IPR002139 (Ribokinase), IPR029056 (Ribokinase-like)	GO:0004747 (ribokinase activity), GO:0006014 (D-ribose metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf07850g07008.1	sp|Q9CAX1|TBL8_ARATH	***-	Protein trichome birefringence-like 8	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf06726g00034.1	sp|Q942D4|BURP3_ORYSJ	*-*-	BURP domain-containing protein 3	IPR004873 (BURP domain)	
Niben101Scf05107g02020.1	sp|Q9SFU6|CALS9_ARATH	*-*-	Callose synthase 9		
Niben101Scf07428g00018.1	AT3G07350.1	***-	Protein of unknown function (DUF506) LENGTH=298	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf04808g00014.1	sp|Q9SZR0|CHMO_ARATH	***-	Choline monooxygenase, chloroplastic	IPR001663 (Aromatic-ring-hydroxylating dioxygenase, alpha subunit), IPR015879 (Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain)	GO:0005506 (iron ion binding), GO:0006725 (cellular aromatic compound metabolic process), GO:0016491 (oxidoreductase activity), GO:0016708 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor), GO:0019439 (aromatic compound catabolic process), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04292g13002.1	AT2G03870.2	***-	Small nuclear ribonucleoprotein family protein LENGTH=99	IPR010920 (Like-Sm (LSM) domain), IPR017132 (U6 snRNA-associated Sm-like protein LSm7)	
Niben101Scf01240g07012.1	sp|Q5R580|ZRAB2_PONAB	--**	Zinc finger Ran-binding domain-containing protein 2	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf09709g01001.1	AT2G25760.2	****	Protein kinase family protein LENGTH=676	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05688g10003.1	gb|AIQ12206.1|	--*-	lytic transglycosylase [Paenibacillus durus]	IPR008258 (Lytic transglycosylase-like SLT domain), IPR023346 (Lysozyme-like domain)	
Niben101Scf04609g00016.1	sp|Q3E9F0|PP392_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05278g01011.1	sp|Q9ZW06|PUM2_ARATH	***-	Pumilio homolog 2	IPR012940 (Nucleic acid binding NABP), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Ctg16204g00003.1	sp|P42423|YXDL_BACSU	****	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf00448g18002.1	sp|Q0IQU1|LAC22_ORYSJ	***-	Laccase-22	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf33179g00010.1	emb|CDY11589.1|	*-*-	BnaC06g31500D [Brassica napus]	IPR003863 (Protein of unknown function DUF220)	
Niben101Scf05579g02004.1			Unknown protein		
Niben101Scf00854g03001.1	ref|NP_671802.2|	--*-	mitovirus RNA-dependent RNA polymerase [Arabidopsis thaliana] gb|ABE65434.1| hypothetical protein [Arabidopsis thaliana] gb|AEC06061.1| mitovirus RNA-dependent RNA polymerase [Arabidopsis thaliana]		
Niben101Scf00752g02009.1			Unknown protein		
Niben101Scf04375g09011.1	sp|Q6DEL2|CLPT1_DANRE	***-	Cleft lip and palate transmembrane protein 1 homolog	IPR008429 (Cleft lip and palate transmembrane 1)	GO:0016021 (integral component of membrane)
Niben101Scf02128g00028.1			Unknown protein		
Niben101Scf12789g00021.1	AT3G07400.1	*-*-	lipase class 3 family protein LENGTH=1003	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf04819g02007.1	AT4G02100.1	***-	Heat shock protein DnaJ with tetratricopeptide repeat LENGTH=546	IPR001623 (DnaJ domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02989g01022.1	sp|Q84W80|FBL42_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf01534g04028.1	sp|A2AC93|DNAI2_MOUSE	--*-	Dynein intermediate chain 2, axonemal		
Niben101Scf02816g08009.1	sp|O23474|PER40_ARATH	--*-	Peroxidase 40		
Niben101Scf09620g04003.1			Unknown protein		
Niben101Scf03857g01008.1	sp|Q65CN1|MNME_BACLD	--*-	tRNA modification GTPase MnmE	IPR005690 (Chloroplast protein import component Toc86/159), IPR024283 (Domain of unknown function DUF3406, chloroplast translocase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides)
Niben101Scf05166g06001.1	AT1G18850.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 40 Blast hits to 40 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=399		
Niben101Scf00759g01007.1	emb|CDX74811.1|	*-*-	BnaA05g05570D [Brassica napus]		
Niben101Scf02269g02002.1	gb|AAS77215.1|	***-	alpha-1,4-galactosyltransferase [Homo sapiens]	IPR007577 (Glycosyltransferase, DXD sugar-binding motif), IPR007652 (Alpha 1,4-glycosyltransferase domain), IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Ctg11212g00001.1	AT3G44850.1	*-**	Protein kinase superfamily protein LENGTH=534	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01269g03011.1	AT1G50740.1	***-	Transmembrane proteins 14C LENGTH=119	IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane)
Niben101Scf00103g03008.1	emb|CDY16294.1|	***-	BnaC01g23290D [Brassica napus]		
Niben101Ctg16084g00001.1	sp|Q8RA26|ISPT_CALS4	****	Isoprenyl transferase	IPR001441 (Decaprenyl diphosphate synthase-like)	GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Ctg09587g00004.1	sp|Q61116|ZN235_MOUSE	--*-	Zinc finger protein 235	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR022755 (Zinc finger, double-stranded RNA binding)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf05997g00001.1	sp|C0LU16|MED21_ARATH	***-	Mediator of RNA polymerase II transcription subunit 21	IPR021384 (Mediator complex, subunit Med21)	
Niben101Scf02818g01012.1	sp|Q9ZV04|PER24_ARATH	*-**	Peroxidase 24	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf12011g01020.1	sp|Q8CGF7|TCRG1_MOUSE	*-*-	Transcription elongation regulator 1	IPR002713 (FF domain)	
Niben101Scf02314g00021.1	AT4G21895.1	*-**	DNA binding LENGTH=239	IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Scf04406g07002.1	sp|Q8QGW7|LITAF_CHICK	--*-	Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog	IPR006629 (LPS-induced tumour necrosis factor alpha factor)	
Niben101Scf02659g02016.1	AT1G09750.1	***-	Eukaryotic aspartyl protease family protein LENGTH=449	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01370g00004.1	sp|Q7MZ92|FADB_PHOLL	*-*-	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf12725g00029.1	sp|P33075|KAD2_SCHPO	****	Adenylate kinase	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf04549g10015.1	AT5G60520.1	***-	Late embryogenesis abundant (LEA) protein-related LENGTH=338	IPR009646 (Root cap)	
Niben101Scf01834g00002.1	sp|Q9FPT1|UBP12_ARATH	*-*-	Ubiquitin carboxyl-terminal hydrolase 12	IPR024729 (ICP0-binding domain of Ubiquitin-specific protease 7)	
Niben101Scf20512g01001.1	sp|Q58DW6|RAB25_BOVIN	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00671g00003.1	gb|ABF93805.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf00994g04003.1	AT5G53750.1	***-	CBS domain-containing protein LENGTH=408	IPR000644 (CBS domain)	
Niben101Scf03121g00008.1	sp|O23474|PER40_ARATH	*-**	Peroxidase 40	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02002g01004.1	AT4G12570.1	*-**	ubiquitin protein ligase 5 LENGTH=873	IPR000569 (HECT)	GO:0004842 (ubiquitin-protein transferase activity)
Niben101Scf00024g03011.1	sp|P29388|NU5M_ARATH	--*-	NADH-ubiquinone oxidoreductase chain 5		
Niben101Scf17872g00007.1	AT5G05550.2	***-	sequence-specific DNA binding transcription factors LENGTH=249		
Niben101Scf03337g06016.1	sp|Q5THR3|EFCB6_HUMAN	--**	EF-hand calcium-binding domain-containing protein 6	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01609g00005.1	sp|P25070|CML24_ARATH	****	Calcium-binding protein CML24	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf30946g00024.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06556g07004.1	sp|Q8IUS5|EPHX4_HUMAN	***-	Epoxide hydrolase 4	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf36321g00001.1	emb|CDY32149.1|	*-*-	BnaCnng06580D [Brassica napus]	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01941g02023.1	sp|F4JGZ1|MED16_ARATH	***-	Mediator of RNA polymerase II transcription subunit 16		
Niben101Scf00773g04008.1	sp|Q9SG96|ATL72_ARATH	*-*-	RING-H2 finger protein ATL72	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08609g00018.1	ref|XP_007014605.1|	***-	Transducin/WD40 repeat-like superfamily protein isoform 1 [Theobroma cacao] gb|EOY32224.1| Transducin/WD40 repeat-like superfamily protein isoform 1 [Theobroma cacao]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02232g06018.1	sp|Q8L7F9|B3GTF_ARATH	****	Beta-1,3-galactosyltransferase 15	IPR002659 (Glycosyl transferase, family 31), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane), GO:0030246 (carbohydrate binding)
Niben101Scf07635g00002.1	sp|Q5P319|RS14_AROAE	--*-	30S ribosomal protein S14	IPR001209 (Ribosomal protein S14)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04008g01011.1	sp|Q9C778|ELP4_ARATH	****	Elongator complex protein 4	IPR008728 (Elongator complex protein 4)	GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0033588 (Elongator holoenzyme complex)
Niben101Scf12348g00002.1	AT2G40113.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=169	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf07880g01012.1	sp|Q5SPX3|RN215_MOUSE	--*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf05056g02010.1	AT4G11670.1	***-	Protein of unknown function (DUF810) LENGTH=1117	IPR008528 (Protein of unknown function DUF810)	
Niben101Scf02290g05023.1	emb|CDX72640.1|	-**-	BnaC07g46620D [Brassica napus]		
Niben101Scf08566g01006.1	sp|Q9KWS6|DNAJ_GEOTM	***-	Chaperone protein DnaJ	IPR012724 (Chaperone DnaJ)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0009408 (response to heat), GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf00125g01015.1	AT2G47540.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=173	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf00965g01002.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01209g00019.1	AT2G38025.1	***-	Cysteine proteinases superfamily protein LENGTH=234	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf01395g05008.1	AT2G34680.1	***-	Outer arm dynein light chain 1 protein LENGTH=1708		
Niben101Scf00176g09015.1	sp|Q3ZC66|CRIPT_BOVIN	*-*-	Cysteine-rich PDZ-binding protein	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR019367 (PDZ-binding protein, CRIPT)	
Niben101Scf02210g11002.1	AT1G80270.1	*-*-	PENTATRICOPEPTIDE REPEAT 596 LENGTH=596	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07953g00014.1	sp|Q9S758|SPL5_ARATH	*-**	Squamosa promoter-binding-like protein 5	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf18068g00003.1	AT2G38780.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 23 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). LENGTH=465		
Niben101Scf06397g00015.1	sp|Q86YN1|DOPP1_HUMAN	***-	Dolichyldiphosphatase 1	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Scf02468g02011.1	sp|Q96299|14339_ARATH	*-*-	14-3-3-like protein GF14 mu	IPR000308 (14-3-3 protein), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf08693g00013.1	gb|AET01485.2|	***-	Avr9/Cf-9 rapidly elicited protein [Medicago truncatula]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf00344g02001.1			Unknown protein		
Niben101Scf02929g05001.1	ref|YP_005090400.1|	*-*-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf00160g08001.1	sp|Q94G86|ALL9_OLEEU	--*-	Glucan endo-1,3-beta-D-glucosidase		
Niben101Scf06504g01029.1	ref|XP_007040564.1|	***-	Galact isoform 2 [Theobroma cacao]	IPR008979 (Galactose-binding domain-like), IPR012919 (SUN domain)	
Niben101Scf02190g06005.1	ref|XP_007013570.1|	*-*-	Ex [Theobroma cacao]		
Niben101Scf03006g00002.1			Unknown protein		
Niben101Scf05839g00012.1	tpg|DAA47038.1|	--*-	TPA: hypothetical protein ZEAMMB73_411286 [Zea mays]		
Niben101Scf00503g08011.1	AT3G61610.1	***-	Galactose mutarotase-like superfamily protein LENGTH=317	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf00800g04004.1	AT4G02930.1	*-**	GTP binding Elongation factor Tu family protein LENGTH=454	IPR005225 (Small GTP-binding protein domain), IPR006298 (GTP-binding protein TypA), IPR009000 (Translation protein, beta-barrel domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf04874g00004.1	gb|KEH18880.1|	*-*-	Ripening related protein family [Medicago truncatula]		
Niben101Scf04748g03003.1	sp|B8FNT7|CH60_DESHD	*-*-	60 kDa chaperonin	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0042026 (protein refolding), GO:0044267 (cellular protein metabolic process)
Niben101Scf04113g01012.1	sp|A0Q316|RL31_CLONN	***-	50S ribosomal protein L31	IPR002150 (Ribosomal protein L31)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03755g03007.1	sp|Q9SQ76|HXK2_SOLTU	****	Hexokinase-2	IPR001312 (Hexokinase)	GO:0004396 (hexokinase activity), GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0006096 (glycolytic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00397g11001.1	ref|XP_002532515.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF29867.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00568g04008.1	sp|A6MMB3|RPOC1_CHLSC	****	DNA-directed RNA polymerase subunit beta'	IPR006592 (RNA polymerase, N-terminal), IPR007080 (RNA polymerase Rpb1, domain 1)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf01409g00020.1			Unknown protein		
Niben101Scf00448g20002.1	sp|P82733|DF183_ARATH	-**-	Defensin-like protein 183		
Niben101Scf11383g03008.1	AT5G40030.1	*-**	Protein kinase superfamily protein LENGTH=499	IPR000014 (PAS domain), IPR000700 (PAS-associated, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004871 (signal transducer activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02215g05012.1	sp|Q9LFT0|TBL19_ARATH	***-	Protein trichome birefringence-like 19	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf04632g03007.1	sp|Q8TRR0|RS11_METAC	***-	30S ribosomal protein S11	IPR001971 (Ribosomal protein S11)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03631g01005.1	ref|NP_182050.2|	*-*-	Integral membrane protein hemolysin-III like protein [Arabidopsis thaliana] gb|AEC10529.1| Integral membrane protein hemolysin-III like protein [Arabidopsis thaliana]		
Niben101Scf03468g01006.1	sp|Q8RY89|PI5K8_ARATH	****	Phosphatidylinositol 4-phosphate 5-kinase 8	IPR002498 (Phosphatidylinositol-4-phosphate 5-kinase, core), IPR003409 (MORN motif), IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf19159g01001.1	ref|XP_002522703.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF39665.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01374g14005.1	sp|Q9SEK2|HXK1_TOBAC	****	Hexokinase-1	IPR001312 (Hexokinase)	GO:0004396 (hexokinase activity), GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0006096 (glycolytic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf06666g01001.1	sp|Q5N870|DCL3A_ORYSJ	*-*-	Endoribonuclease Dicer homolog 3a		
Niben101Scf14955g00009.1			Unknown protein		
Niben101Scf00916g00007.1	sp|Q2TA14|PCP_BOVIN	*-**	Lysosomal Pro-X carboxypeptidase	IPR008758 (Peptidase S28)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf04393g00015.1	gb|AES79247.2|	*-*-	DUF247 domain protein [Medicago truncatula]	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf03565g00002.1	sp|Q2TBL4|RPC3_BOVIN	****	DNA-directed RNA polymerase III subunit RPC3	IPR008806 (RNA polymerase III Rpc82, C -terminal), IPR013197 (RNA polymerase III subunit RPC82-related, helix-turn-helix)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf08844g02002.1	sp|Q8L649|BB_ARATH	***-	E3 ubiquitin ligase BIG BROTHER	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf00851g00024.1	sp|Q9FMR0|PER60_ARATH	****	Peroxidase 60	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf14662g01002.1	gb|AES64334.2|	*-*-	F-box protein interaction domain protein [Medicago truncatula]	IPR017451 (F-box associated interaction domain)	
Niben101Scf17221g00006.1	sp|P36409|RAB2A_DICDI	--*-	Ras-related protein Rab-2A	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf07984g02015.1	AT4G39210.1	****	Glucose-1-phosphate adenylyltransferase family protein LENGTH=521	IPR011831 (Glucose-1-phosphate adenylyltransferase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005978 (glycogen biosynthetic process), GO:0008878 (glucose-1-phosphate adenylyltransferase activity), GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf05649g06001.1	sp|Q55141|ILVH_SYNY3	*-**	Acetolactate synthase small subunit	IPR004789 (Acetolactate synthase, small subunit)	GO:0003984 (acetolactate synthase activity), GO:0008152 (metabolic process), GO:0009082 (branched-chain amino acid biosynthetic process), GO:0016597 (amino acid binding)
Niben101Scf08601g00001.1			Unknown protein		
Niben101Scf07509g01007.1	sp|Q9ZV88|BEH4_ARATH	*-*-	BES1/BZR1 homolog protein 4		
Niben101Scf05301g04003.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07616g00008.1	AT1G35670.1	****	calcium-dependent protein kinase 2 LENGTH=495	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03220g00010.1	AT1G27090.1	***-	glycine-rich protein LENGTH=420		
Niben101Scf06525g02003.1	sp|Q9SAJ5|PP133_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06992g00003.1			Unknown protein		
Niben101Scf06855g01014.1	emb|CDY48085.1|	*-*-	BnaC06g02490D [Brassica napus]		
Niben101Scf00793g01002.1	AT3G26560.1	*-*-	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf14010g01001.1	sp|Q07761|RL23A_TOBAC	***-	60S ribosomal protein L23a	IPR005633 (Ribosomal protein L23/L25, N-terminal), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00573g00010.1	AT1G07160.1	****	Protein phosphatase 2C family protein LENGTH=380	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf03944g02013.1	sp|Q9M7X7|RL291_ARATH	***-	60S ribosomal protein L29-1	IPR002673 (Ribosomal protein L29e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf25706g00003.1	sp|Q9LZG0|ADK2_ARATH	****	Adenosine kinase 2	IPR001805 (Adenosine kinase), IPR029056 (Ribokinase-like)	GO:0004001 (adenosine kinase activity), GO:0006166 (purine ribonucleoside salvage), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf00887g05008.1	AT3G17660.1	***-	ARF-GAP domain 15 LENGTH=232		
Niben101Scf05413g02004.1	AT5G54530.1	***-	Protein of unknown function, DUF538 LENGTH=161	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf00849g01011.1	emb|CDY45481.1|	*-*-	BnaCnng12400D [Brassica napus]		
Niben101Scf03643g02035.1	ATMG00090.1	*-**	structural constituent of ribosome;protein binding chrM:25482-28733 REVERSE LENGTH=556	IPR001351 (Ribosomal protein S3, C-terminal)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04955g03004.1	sp|O22173|PABP4_ARATH	--**	Polyadenylate-binding protein 4	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf03434g00005.1	gb|AID60104.1|	*-*-	At4g33800-like protein [Brassica napus]		
Niben101Scf06560g00001.1	sp|P81391|MYB05_ANTMA	*-*-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00978g00001.1	sp|O04292|ATBH9_ARATH	***-	Homeobox-leucine zipper protein ATHB-9	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR013978 (MEKHLA), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf02155g01004.1	sp|Q8VHZ7|IMP4_MOUSE	***-	U3 small nucleolar ribonucleoprotein protein IMP4	IPR004154 (Anticodon-binding), IPR007109 (Brix domain)	
Niben101Scf05434g00018.1	sp|O74427|URK1_SCHPO	*-*-	Uridine kinase	IPR023577 (CYTH-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00539g05007.1	sp|Q9LRZ0|TPR2_ARATH	*-*-	Topless-related protein 2	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR027728 (Topless family)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf13828g01017.1	sp|Q58DC2|DCAF4_BOVIN	--*-	DDB1- and CUL4-associated factor 4	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02553g00001.1	sp|J9VQ03|NOG2_CRYNH	--**	Nucleolar GTP-binding protein 2	IPR006073 (GTP binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf02246g01012.1	sp|O13936|SPT5_SCHPO	*-**	Transcription elongation factor spt5	IPR005100 (Transcription elongation factor Spt5, NGN domain), IPR005824 (KOW), IPR006645 (NusG, N-terminal)	GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00806g04007.1	sp|A6VG23|GLMU_METM7	***-	Bifunctional protein GlmU	IPR001451 (Bacterial transferase hexapeptide repeat), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf03864g00006.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf15956g00011.1	sp|Q9LQ16|PPR94_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05959g00007.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04195g00010.1	AT4G31540.1	*-**	exocyst subunit exo70 family protein G1 LENGTH=687	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf00083g02012.1	sp|Q9S9T7|VP282_ARATH	***-	Vacuolar protein sorting-associated protein 28 homolog 2	IPR007143 (Vacuolar protein sorting-associated, VPS28)	
Niben101Scf06770g00006.1	ref|NP_177006.1|	--*-	core-2/I-branching beta-1,6-N-acetylgluc [Arabidopsis thaliana]		
Niben101Scf02280g06009.1	AT2G39970.1	***-	Mitochondrial substrate carrier family protein LENGTH=331	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf00220g05003.1	AT2G25737.1	***-	Sulfite exporter TauE/SafE family protein LENGTH=476	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf00262g03012.1	sp|Q9ZVI3|QKIL3_ARATH	--*-	KH domain-containing protein		
Niben101Scf00653g00002.1	sp|Q5ZJK8|TCPH_CHICK	*-**	T-complex protein 1 subunit eta	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf06776g00004.1			Unknown protein		
Niben101Scf07680g02002.1	sp|P83947|PME1_FICPW	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01745g05008.1	sp|G5CEW6|IF4G_WHEAT	***-	Eukaryotic translation initiation factor 4G	IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00539g05009.1	sp|Q503L9|NXN_DANRE	*-*-	Nucleoredoxin	IPR012336 (Thioredoxin-like fold)	
Niben101Scf00747g07008.1	sp|P87173|LSM1_SCHPO	***-	U6 snRNA-associated Sm-like protein LSm1	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf04396g04001.1	sp|Q6Q9I2|MAD15_ORYSJ	*-*-	MADS-box transcription factor 15	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf04796g00019.1	sp|Q8GYX3|MP705_ARATH	****	Microtubule-associated protein 70-5	IPR009768 (Microtubule-associated protein 70)	GO:0007010 (cytoskeleton organization), GO:0008017 (microtubule binding)
Niben101Scf09353g06004.1	AT5G26670.1	***-	Pectinacetylesterase family protein LENGTH=416	IPR004963 (Protein notum homologue)	
Niben101Scf02658g05003.1	AT2G21210.1	***-	SAUR-like auxin-responsive protein family LENGTH=98	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf04122g05013.1	ref|XP_003608228.1|	***-	LysM domain containing protein [Medicago truncatula] gb|AES90425.1| carbohydrate-binding module family protein [Medicago truncatula]	IPR018392 (LysM domain)	
Niben101Scf07714g00008.1	sp|B9LNJ8|HIS8_HALLT	*-**	Histidinol-phosphate aminotransferase	IPR021178 (Tyrosine transaminase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01731g03005.1	ref|XP_002514414.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF48010.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09834g00014.1	sp|C1DHS2|UBIE_AZOVD	--**	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf06435g01007.1	ref|YP_009045728.1|	--*-	orf112a (mitochondrion) [Batis maritima] gb|AIC83331.1| orf112a (mitochondrion) [Batis maritima]		
Niben101Scf03693g00005.1	AT1G75170.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=296	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf01090g04017.1	sp|Q9XHP0|11S2_SESIN	*-*-	11S globulin seed storage protein 2	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf11886g02001.1	sp|Q96262|PCAP1_ARATH	****	Plasma membrane-associated cation-binding protein 1	IPR008469 (DREPP family)	GO:0046658 (anchored component of plasma membrane), GO:0051716 (cellular response to stimulus)
Niben101Scf02307g00013.1	sp|Q5M7D4|CNPY1_XENLA	*-*-	Protein canopy homolog 1	IPR021852 (Domain of unknown function DUF3456)	
Niben101Scf02909g00020.1	sp|Q8KBY0|ACSA_CHLTE	*-*-	Acetyl-coenzyme A synthetase	IPR000873 (AMP-dependent synthetase/ligase), IPR009081 (Acyl carrier protein-like), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00482g08002.1			Unknown protein		
Niben101Scf02427g03012.1	AT5G23200.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=399		
Niben101Scf01386g00006.1	AT3G06240.1	***-	F-box family protein LENGTH=427	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf11751g01016.1	AT2G36835.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=124		
Niben101Scf13571g04006.1	emb|CDY03452.1|	--*-	BnaC01g16300D [Brassica napus]		
Niben101Scf00854g07038.1	sp|A4GG97|PSAA_PHAVU	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00063g14006.1	AT1G74680.1	***-	Exostosin family protein LENGTH=461	IPR004263 (Exostosin-like)	
Niben101Scf01148g00008.1	sp|Q9SE97|FH1_ARATH	*-*-	Formin-like protein 1	IPR015425 (Formin, FH2 domain)	
Niben101Scf00401g00010.1	sp|B9DFS6|SNX2B_ARATH	***-	Sorting nexin 2B	IPR001683 (Phox homologous domain), IPR015404 (Vps5 C-terminal)	GO:0035091 (phosphatidylinositol binding)
Niben101Scf06221g04078.1	AT4G34860.1	*-*-	Plant neutral invertase family protein LENGTH=571	IPR024746 (Glycosyl hydrolase family 100)	GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf06862g01017.1	AT1G14450.1	*-*-	NADH dehydrogenase (ubiquinone)s LENGTH=73		
Niben101Scf02846g00002.1	sp|Q9M2J9|BET11_ARATH	***-	Bet1-like SNARE 1-1	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf09505g00001.1	sp|Q8VWK4|TRB1_ARATH	*-**	Telomere repeat-binding factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01451g06002.1	sp|Q4L385|IMDH_STAHJ	*-*-	Inosine-5'-monophosphate dehydrogenase	IPR000644 (CBS domain)	
Niben101Scf01917g06001.1	sp|Q9UAE6|ENO1_TOXGO	*-*-	Enolase 1	IPR000941 (Enolase), IPR029017 (Enolase N-terminal domain-like), IPR029065 (Enolase C-terminal domain-like)	GO:0000015 (phosphopyruvate hydratase complex), GO:0000287 (magnesium ion binding), GO:0004634 (phosphopyruvate hydratase activity), GO:0006096 (glycolytic process)
Niben101Scf02172g06027.1	sp|Q09FY3|RK2_PLAOC	*-**	50S ribosomal protein L2, chloroplastic	IPR002171 (Ribosomal protein L2)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit), GO:0016740 (transferase activity)
Niben101Scf01936g04003.1	AT5G10200.1	***-	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein LENGTH=631	IPR011990 (Tetratricopeptide-like helical domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00058g09016.1	sp|Q802A6|STK4_SQUAC	*-**	Serine/threonine-protein kinase 3/4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08479g00002.1	sp|F4JRE0|TMN12_ARATH	***-	Transmembrane 9 superfamily member 12	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf23282g01004.1	AT1G70180.2	*-*-	Sterile alpha motif (SAM) domain-containing protein LENGTH=460	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf07187g00002.1	sp|P73456|FTSZ_SYNY3	***-	Cell division protein FtsZ	IPR000158 (Cell division protein FtsZ)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005737 (cytoplasm), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf04741g00008.1	ref|XP_007022019.1|	***-	Gb:AAD10662.1, putative isoform 5 [Theobroma cacao] gb|EOY13544.1| Gb:AAD10662.1, putative isoform 5 [Theobroma cacao]		
Niben101Scf02425g05005.1	sp|Q10282|GBB_SCHPO	****	Guanine nucleotide-binding protein subunit beta	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf00568g04006.1	sp|Q1ACH1|CYB6_CHAVU	***-	Cytochrome b6	IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf03879g00010.1	AT2G24420.1	*-*-	DNA repair ATPase-related LENGTH=440		
Niben101Scf00870g05004.1	gb|KEH18503.1|	*-*-	dormancy/auxin associated protein [Medicago truncatula]	IPR008406 (Dormancyauxin associated)	
Niben101Scf04500g02001.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02571g03004.1			Unknown protein		
Niben101Scf02191g02009.1	AT1G73660.1	*-**	protein tyrosine kinase family protein LENGTH=1030	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02175g05002.1	sp|Q9SD24|Y3122_ARATH	-**-	WEB family protein		
Niben101Scf07616g00009.1	sp|O21243|COXZ_RECAM	***-	Cytochrome c oxidase assembly protein ctaG	IPR007533 (Cytochrome c oxidase assembly protein CtaG/Cox11), IPR023471 (Cytochrome c oxidase assembly protein CtaG/Cox11, domain)	GO:0005507 (copper ion binding)
Niben101Scf05009g00002.1	sp|Q9M2W3|PGPS2_ARATH	****	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2	IPR000462 (CDP-alcohol phosphatidyltransferase)	GO:0008444 (CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity), GO:0008654 (phospholipid biosynthetic process), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0016780 (phosphotransferase activity, for other substituted phosphate groups)
Niben101Scf05948g06007.1	sp|Q3J872|PYRC_NITOC	****	Dihydroorotase	IPR004721 (Dihydroorotase homodimeric type)	GO:0004151 (dihydroorotase activity), GO:0016787 (hydrolase activity), GO:0016812 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides), GO:0019856 (pyrimidine nucleobase biosynthetic process)
Niben101Scf03004g00008.1	sp|Q9FME8|OPT4_ARATH	*-*-	Oligopeptide transporter 4	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf01577g00006.1	AT5G49830.2	*-*-	exocyst complex component 84B LENGTH=814		
Niben101Scf03923g00007.1	sp|Q9ZQX6|ETOL1_ARATH	***-	ETO1-like protein 1	IPR011333 (BTB/POZ fold), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00332g00006.1	gb|KFB84031.1|	***-	ABC transporter permease [Calothrix sp. 336/3]	IPR003453 (Permease domain)	
Niben101Scf01090g02004.1	AT2G38940.1	****	phosphate transporter 1;4 LENGTH=534	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf16022g04004.1	AT1G63000.1	***-	nucleotide-rhamnose synthase/epimerase-reductase LENGTH=301	IPR016040 (NAD(P)-binding domain), IPR029903 (RmlD-like substrate binding domain)	
Niben101Scf09817g02005.1	sp|P09607|PME21_SOLLC	--**	Pectinesterase 2.1	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf02929g01056.1	sp|P0C8K6|RM02_ORYSA	*-*-	60S ribosomal protein L2, mitochondrial	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf16114g01007.1	sp|Q8RVQ5|SEC10_ARATH	***-	Exocyst complex component SEC10	IPR009976 (Exocyst complex component Sec10-like)	GO:0005737 (cytoplasm), GO:0006887 (exocytosis), GO:0048278 (vesicle docking)
Niben101Scf08519g01017.1	AT1G79000.2	****	histone acetyltransferase of the CBP family 1 LENGTH=1741	IPR000197 (Zinc finger, TAZ-type), IPR000433 (Zinc finger, ZZ-type), IPR003101 (Coactivator CBP, KIX domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013178 (Histone H3-K56 acetyltransferase, RTT109)	GO:0003712 (transcription cofactor activity), GO:0004402 (histone acetyltransferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf06441g00016.1	sp|P0A6B3|ACP1_SHIFL	*-*-	Acyl carrier protein	IPR003231 (Acyl carrier protein (ACP)), IPR009081 (Acyl carrier protein-like)	GO:0006633 (fatty acid biosynthetic process)
Niben101Scf10262g00013.1	emb|CDY52413.1|	***-	BnaCnng22340D [Brassica napus]	IPR024738 (Transcriptional coactivator Hfi1/Transcriptional adapter 1)	GO:0070461 (SAGA-type complex)
Niben101Scf03504g06013.1	sp|Q9SV21|COPB1_ARATH	***-	Coatomer subunit beta-1	IPR016460 (Coatomer beta subunit (COPB1)), IPR029446 (Coatomer beta subunit, appendage platform domain)	GO:0005198 (structural molecule activity), GO:0005488 (binding), GO:0005737 (cytoplasm), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030126 (COPI vesicle coat)
Niben101Scf18001g00009.1	ref|XP_002511470.1|	*-*-	Arginine/serine-rich coiled coil protein, putative [Ricinus communis] gb|EEF52072.1| Arginine/serine-rich coiled coil protein, putative [Ricinus communis]		
Niben101Scf06720g01018.1	sp|P56533|BADH_GADMC	****	Betaine aldehyde dehydrogenase	IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf01100g01013.1	AT2G04410.1	***-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=73	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf01237g11009.1	sp|Q39191|WAK1_ARATH	****	Wall-associated receptor kinase 1	IPR000742 (Epidermal growth factor-like domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf06506g02009.1	ref|XP_007012086.1|	*-*-	Embryonic flower 1, putative isoform 1 [Theobroma cacao] gb|EOY29705.1| Embryonic flower 1, putative isoform 1 [Theobroma cacao]		
Niben101Scf00917g03007.1	sp|Q9C626|FB37_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf07036g02018.1	sp|Q9ULK6|RN150_HUMAN	--*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00317g06019.1	ref|XP_007051163.1|	****	Zinc knuckle family protein isoform 3 [Theobroma cacao] gb|EOX95320.1| Zinc knuckle family protein isoform 3 [Theobroma cacao]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf06504g01027.1	sp|Q9XED8|ARFI_ARATH	****	Auxin response factor 9	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf12210g08011.1	sp|Q9FE67|ERF80_ARATH	*-**	Ethylene-responsive transcription factor 9	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01063g02004.1	sp|P81394|MYB15_ANTMA	*-*-	Myb-related protein 315	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf19458g00004.1	sp|P85191|CP450_HELAN	*-*-	Cytochrome P450	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01269g13011.1	AT1G72000.1	*-*-	Plant neutral invertase family protein LENGTH=499	IPR024746 (Glycosyl hydrolase family 100)	GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf14643g00011.1	sp|Q8N961|ABTB2_HUMAN	--*-	Ankyrin repeat and BTB/POZ domain-containing protein 2	IPR011333 (BTB/POZ fold), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf00751g04010.1	sp|Q9TLY1|ILVH_CYACA	****	Acetolactate synthase small subunit	IPR004789 (Acetolactate synthase, small subunit)	GO:0003984 (acetolactate synthase activity), GO:0008152 (metabolic process), GO:0009082 (branched-chain amino acid biosynthetic process), GO:0016597 (amino acid binding)
Niben101Scf09459g01006.1	AT1G48910.1	****	Flavin-containing monooxygenase family protein LENGTH=383	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00542g07011.1	sp|Q7Z7K6|CENPV_HUMAN	***-	Centromere protein V	IPR011057 (Mss4-like)	GO:0008152 (metabolic process), GO:0016846 (carbon-sulfur lyase activity)
Niben101Scf02831g02021.1	ref|XP_002514414.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF48010.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf33312g00008.1	ref|XP_002520082.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF42406.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf12205g03024.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf08653g00005.1			Unknown protein		
Niben101Scf02044g12029.1	gb|ABB72396.1|	*-*-	seed maturation protein [Glycine tomentella]		
Niben101Scf15614g00006.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01362g04021.1	sp|Q9SZR9|AB9G_ARATH	--*-	ABC transporter G family member 9	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf07500g01003.1	emb|CDY10150.1|	-**-	BnaC05g03930D [Brassica napus]		
Niben101Scf08609g00016.1	sp|Q9SH26|PP102_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03535g01024.1	sp|O60870|KIN17_HUMAN	*-*-	DNA/RNA-binding protein KIN17	IPR019447 (DNA/RNA-binding protein Kin17, conserved domain)	
Niben101Scf00264g02010.1	emb|CDY01339.1|	***-	BnaA07g11120D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf01831g03013.1	gb|KEH41027.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf11341g00017.1	AT1G74030.1	*-*-	enolase 1 LENGTH=477	IPR000941 (Enolase), IPR029017 (Enolase N-terminal domain-like)	GO:0000015 (phosphopyruvate hydratase complex), GO:0000287 (magnesium ion binding), GO:0004634 (phosphopyruvate hydratase activity), GO:0006096 (glycolytic process)
Niben101Scf11723g01015.1	emb|CDX99259.1|	***-	BnaC05g33740D [Brassica napus]		
Niben101Scf15049g00023.1	AT4G32250.1	*-**	Protein kinase superfamily protein LENGTH=611	IPR011009 (Protein kinase-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0008270 (zinc ion binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0046872 (metal ion binding)
Niben101Scf10785g01016.1	sp|Q9LYR6|PTR49_ARATH	***-	Protein NRT1/ PTR FAMILY 6.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf00159g03005.1	sp|Q9FLP6|SUMO2_ARATH	***-	Small ubiquitin-related modifier 2	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf05948g02003.1			Unknown protein		
Niben101Scf01063g09014.1	sp|Q86Y33|CD20B_HUMAN	***-	Cell division cycle protein 20 homolog B	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03255g00018.1	AT5G47730.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=341	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf00428g07007.1	sp|P23444|H1_MAIZE	*-*-	Histone H1	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR020478 (AT hook-like)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf02406g04036.1	tpg|DAA43042.1|	--*-	TPA: hypothetical protein ZEAMMB73_675451 [Zea mays]		
Niben101Scf01847g07003.1	sp|Q41009|TOC34_PEA	*-*-	Translocase of chloroplast 34	IPR005690 (Chloroplast protein import component Toc86/159), IPR024283 (Domain of unknown function DUF3406, chloroplast translocase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides)
Niben101Scf04612g00002.1	AT1G48460.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=340		
Niben101Scf02369g02006.1			Unknown protein		
Niben101Scf08618g02001.1	sp|Q9LQR0|LBD1_ARATH	***-	LOB domain-containing protein 1	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf02073g00008.1	sp|Q9LZH9|RL7A2_ARATH	***-	60S ribosomal protein L7a-2	IPR018492 (Ribosomal protein L7Ae/L8/Nhp2 family), IPR029064 (50S ribosomal protein L30e-like)	GO:0030529 (ribonucleoprotein complex), GO:0042254 (ribosome biogenesis)
Niben101Scf11646g02017.1	AT4G13550.1	*-*-	triglyceride lipases;triglyceride lipases LENGTH=715	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00119g02011.1	ref|XP_002531363.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF31011.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07511g03006.1	AT1G09910.1	*-*-	Rhamnogalacturonate lyase family protein LENGTH=675	IPR008979 (Galactose-binding domain-like), IPR010325 (Rhamnogalacturonate lyase), IPR011013 (Galactose mutarotase-like domain), IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf02351g08002.1	AT5G27000.1	*-**	kinesin 4 LENGTH=987	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf04741g01004.1			Unknown protein		
Niben101Scf02798g07006.1	sp|Q2FI55|HTRAL_STAA3	*-*-	Serine protease HtrA-like	IPR009003 (Trypsin-like cysteine/serine peptidase domain), IPR015724 (Serine endopeptidase DegP2)	GO:0003824 (catalytic activity), GO:0005515 (protein binding)
Niben101Scf00328g07002.1	AT1G05420.1	*-*-	ovate family protein 12 LENGTH=226	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf03341g04006.1	sp|Q86Y33|CD20B_HUMAN	***-	Cell division cycle protein 20 homolog B	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01305g01001.1	sp|Q3EDF8|PPR28_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf08636g00001.1	AT5G25170.1	***-	PPPDE putative thiol peptidase family protein LENGTH=218	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf00854g03003.1	gb|AAA80307.1|	*-*-	orf154 [Petunia axillaris subsp. parodii]		
Niben101Scf04388g01013.1	gb|KEH23636.1|	*-*-	NBS-LRR disease resistance protein [Medicago truncatula]		
Niben101Scf08939g00002.1	sp|Q9LPM9|BCAT6_ARATH	****	Branched-chain-amino-acid aminotransferase 6	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0004084 (branched-chain-amino-acid transaminase activity), GO:0008152 (metabolic process), GO:0009081 (branched-chain amino acid metabolic process)
Niben101Scf07693g00011.1	sp|O80340|ERF78_ARATH	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06408g03006.1	ref|YP_009091714.1|	***-	orf105 (mitochondrion) [Panax ginseng] gb|AHJ81036.1| orf105 (mitochondrion) [Panax ginseng]		
Niben101Scf09248g01002.1	sp|Q93YQ1|RTOR1_ARATH	****	Regulatory-associated protein of TOR 1	IPR004083 (Regulatory associated protein of TOR), IPR029347 (Raptor N-terminal CASPase-like domain)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0031929 (TOR signaling), GO:0031931 (TORC1 complex)
Niben101Scf06739g00007.1	gb|ABA93441.1|	--*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf13249g00002.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf02979g02005.1	sp|P44933|KEFX_HAEIN	****	Glutathione-regulated potassium-efflux system protein	IPR006153 (Cation/H+ exchanger), IPR016040 (NAD(P)-binding domain)	GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00466g02013.1	ref|XP_002524703.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF37722.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00901g01003.1	AT4G24290.2	***-	MAC/Perforin domain-containing protein LENGTH=606	IPR020864 (Membrane attack complex component/perforin (MACPF) domain)	
Niben101Scf36738g00016.1	sp|Q8VWK4|TRB1_ARATH	****	Telomere repeat-binding factor 1	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf01182g02014.1	sp|B9IVQ9|CCA_BACCQ	*-*-	CCA-adding enzyme	IPR002646 (Poly A polymerase, head domain)	GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf02952g01001.1	emb|CDX82106.1|	***-	BnaC02g21840D [Brassica napus]		
Niben101Scf03985g03010.1	sp|O82509|TBL23_ARATH	***-	Protein trichome birefringence-like 23	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf04119g03004.1	sp|Q93VV5|PTR16_ARATH	***-	Protein NRT1/ PTR FAMILY 4.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf06080g01006.1	AT5G06850.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=794	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf06301g03004.1	emb|CDY45886.1|	*-*-	BnaC01g28220D [Brassica napus]		
Niben101Scf08751g00007.1	ref|XP_002516322.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46069.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07019g02014.1	sp|P0C0V4|DPH3_EMENI	***-	Diphthamide biosynthesis protein 3	IPR007872 (Zinc finger, DPH-type)	
Niben101Scf00170g05004.1	AT1G07850.1	***-	Protein of unknown function (DUF604) LENGTH=541	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf03805g01010.1	sp|Q54TL0|KIF7_DICDI	*-**	Kinesin-related protein 7	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf08127g06001.1	sp|A7FGT2|MEND_YERP3	*-**	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase	IPR004433 (Menaquinone biosynthesis protein MenD), IPR010196 (O-succinylbenzoic acid (OSB) synthetase), IPR011766 (Thiamine pyrophosphate enzyme, C-terminal TPP-binding), IPR013342 (Mandelate racemase/muconate lactonizing enzyme, C-terminal), IPR029017 (Enolase N-terminal domain-like), IPR029035 (DHS-like NAD/FAD-binding domain), IPR029058 (Alpha/Beta hydrolase fold), IPR029061 (Thiamin diphosphate-binding fold), IPR029065 (Enolase C-terminal domain-like)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0009063 (cellular amino acid catabolic process), GO:0009234 (menaquinone biosynthetic process), GO:0016836 (hydro-lyase activity), GO:0030976 (thiamine pyrophosphate binding), GO:0070204 (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity)
Niben101Scf05206g01008.1	sp|Q8K339|KIN17_MOUSE	***-	DNA/RNA-binding protein KIN17	IPR019447 (DNA/RNA-binding protein Kin17, conserved domain)	
Niben101Scf07811g00006.1			Unknown protein		
Niben101Scf04292g01004.1	sp|Q06881|BCCP_NOSS1	--*-	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	IPR000089 (Biotin/lipoyl attachment)	
Niben101Scf04071g06015.1	ref|XP_002898619.1|	--*-	conserved hypothetical protein [Phytophthora infestans T30-4] gb|EEY63096.1| conserved hypothetical protein [Phytophthora infestans T30-4]		
Niben101Scf00895g00001.1			Unknown protein		
Niben101Scf02461g05002.1	sp|Q40585|VATL_TOBAC	****	V-type proton ATPase 16 kDa proteolipid subunit	IPR000245 (V-ATPase proteolipid subunit), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf15766g00011.1	AT3G45740.1	***-	hydrolase family protein / HAD-superfamily protein LENGTH=376	IPR006357 (HAD-superfamily hydrolase, subfamily IIA), IPR023214 (HAD-like domain)	
Niben101Scf31379g00001.1	sp|Q9C9I6|PP116_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf07303g01001.1			Unknown protein	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf10940g04027.1	sp|Q55075|RADA_SULSO	****	DNA repair and recombination protein RadA	IPR016467 (DNA recombination and repair protein, RecA-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000166 (nucleotide binding), GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0008094 (DNA-dependent ATPase activity)
Niben101Scf08368g01010.1	sp|Q54YL3|INT11_DICDI	***-	Integrator complex subunit 11 homolog	IPR001279 (Beta-lactamase-like), IPR011108 (RNA-metabolising metallo-beta-lactamase), IPR022712 (Beta-Casp domain)	
Niben101Scf09189g00005.1	sp|Q6NNI8|SAP1_ARATH	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 1	IPR000058 (Zinc finger, AN1-type), IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf04385g01002.1	sp|Q67XQ0|Y4424_ARATH	*-*-	DUF21 domain-containing protein	IPR002550 (Domain of unknown function DUF21)	
Niben101Scf01623g12020.1	sp|P27898|MYBP_MAIZE	*-*-	Myb-related protein P	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00248g02011.1	sp|B8HUU1|NDHN_CYAP4	****	NAD(P)H-quinone oxidoreductase subunit N	IPR020874 (NAD(P)H-quinone oxidoreductase, subunit N)	GO:0016020 (membrane), GO:0016655 (oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00338g06028.1	ref|XP_002521307.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF41081.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06509g02007.1	sp|P93834|HXK2_ARATH	***-	Hexokinase-2	IPR001312 (Hexokinase)	GO:0005524 (ATP binding), GO:0005975 (carbohydrate metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf14805g04015.1	sp|O64705|PP184_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06267g01008.1	ref|XP_003626920.1|	****	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf34874g00008.1	sp|Q01IH3|PX114_ORYSI	****	Peroxisomal membrane protein 11-4	IPR008733 (Peroxisomal biogenesis factor 11)	GO:0005779 (integral component of peroxisomal membrane), GO:0016559 (peroxisome fission)
Niben101Scf04676g00006.1	AT4G33490.2	*-*-	Eukaryotic aspartyl protease family protein LENGTH=425	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03152g00033.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02873g01010.1	AT5G08400.1	***-	Protein of unknown function (DUF3531) LENGTH=333	IPR021920 (Protein of unknown function DUF3531)	
Niben101Scf08167g05013.1	sp|Q9FZ96|PUP1_ARATH	--*-	Purine permease 1		
Niben101Scf14394g00001.1	sp|Q17QU7|DHR13_BOVIN	****	Dehydrogenase/reductase SDR family member 13	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf03396g07029.1	AT5G19760.1	***-	Mitochondrial substrate carrier family protein LENGTH=298	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf03040g04004.1	emb|CDY19004.1|	***-	BnaC01g20640D [Brassica napus]		
Niben101Scf00065g00004.1	sp|Q9FHW9|GDL90_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00592g11019.1	sp|Q9VLR5|TCP4_DROME	****	RNA polymerase II transcriptional coactivator	IPR009044 (ssDNA-binding transcriptional regulator)	GO:0003677 (DNA binding), GO:0003713 (transcription coactivator activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00408g11013.1	sp|Q9SF78|GDL29_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01626g03016.1	gb|ABA94365.1|	*-*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf01993g08008.1	sp|Q6RHR6|DMI1_MEDTR	*-*-	Ion channel DMI1	IPR016040 (NAD(P)-binding domain)	
Niben101Scf06684g02017.1	AT5G52780.1	*-*-	Protein of unknown function (DUF3464) LENGTH=168	IPR021855 (Protein of unknown function DUF3464)	
Niben101Scf00854g01042.1			Unknown protein		
Niben101Scf13476g00003.1	AT3G63390.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=175		
Niben101Scf05047g04009.1	sp|Q9FAF8|PFP_PORGN	****	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase	IPR000023 (Phosphofructokinase domain), IPR011183 (Pyrophosphate-dependent phosphofructokinase PfpB)	GO:0003872 (6-phosphofructokinase activity), GO:0005524 (ATP binding), GO:0006096 (glycolytic process), GO:0047334 (diphosphate-fructose-6-phosphate 1-phosphotransferase activity)
Niben101Scf02386g00011.1			Unknown protein		
Niben101Scf08783g01016.1	ref|WP_026100699.1|	*-*-	abortive phage infection protein [Synechococcus sp. PCC 7336]	IPR003675 (CAAX amino terminal protease)	GO:0016020 (membrane)
Niben101Scf05409g00013.1	ref|WP_017310173.1|	***-	glycerol dehydrogenase [Fischerella sp. PCC 9339]	IPR021467 (Protein of unknown function DUF3119)	
Niben101Scf02831g07011.1	AT3G62300.2	*-*-	DOMAIN OF UNKNOWN FUNCTION 724 7 LENGTH=723	IPR007930 (Protein of unknown function DUF724), IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf09832g00002.1	sp|P28011|AAT1_MEDSA	***-	Aspartate aminotransferase 1	IPR000796 (Aspartate/other aminotransferase), IPR015424 (Pyridoxal phosphate-dependent transferase), IPR018028 (Catalase, mono-functional, haem-containing)	GO:0003824 (catalytic activity), GO:0004096 (catalase activity), GO:0006520 (cellular amino acid metabolic process), GO:0006979 (response to oxidative stress), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0020037 (heme binding), GO:0030170 (pyridoxal phosphate binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01819g02018.1	sp|Q9ZUM0|C3H17_ARATH	***-	Zinc finger CCCH domain-containing protein 17	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf00820g03002.1	sp|Q7XJN6|PP197_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05009g06003.1	sp|B8G1Y7|KAD_DESHD	****	Adenylate kinase	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004017 (adenylate kinase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0016776 (phosphotransferase activity, phosphate group as acceptor), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf04551g02004.1	sp|Q9NZC3|GDE1_HUMAN	--**	Glycerophosphodiester phosphodiesterase 1	IPR004129 (Glycerophosphoryl diester phosphodiesterase)	GO:0006071 (glycerol metabolic process), GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity), GO:0008889 (glycerophosphodiester phosphodiesterase activity)
Niben101Scf00271g07018.1	gb|ABB83644.1|	--*-	PIF-like transposase [Daucus carota]		
Niben101Scf08039g00006.1			Unknown protein		
Niben101Scf02030g01005.1	sp|Q9SV13|SUT31_ARATH	****	Sulfate transporter 3.1	IPR001902 (Sulphate anion transporter)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport), GO:1902358 (sulfate transmembrane transport)
Niben101Scf02564g03011.1	sp|O13710|SMC5_SCHPO	--*-	Structural maintenance of chromosomes protein 5		
Niben101Scf08250g03012.1	sp|P29545|EF1B_ORYSJ	*-**	Elongation factor 1-beta	IPR014717 (Translation elongation factor EF1B/ribosomal protein S6)	GO:0003746 (translation elongation factor activity), GO:0005853 (eukaryotic translation elongation factor 1 complex), GO:0006414 (translational elongation)
Niben101Scf08294g07002.1	ref|XP_002521307.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF41081.1| conserved hypothetical protein [Ricinus communis]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf07995g00001.1	sp|P51110|DFRA_VITVI	*-**	Dihydroflavonol-4-reductase	IPR016040 (NAD(P)-binding domain)	GO:0003854 (3-beta-hydroxy-delta5-steroid dehydrogenase activity), GO:0006694 (steroid biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf00883g12004.1	sp|O95619|YETS4_HUMAN	*-*-	YEATS domain-containing protein 4	IPR005033 (YEATS)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03455g01001.1	AT4G18210.1	***-	purine permease 10 LENGTH=390	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf15321g00001.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf05800g02008.1	sp|Q9M363|B561I_ARATH	*-**	Cytochrome b561 and DOMON domain-containing protein	IPR002541 (Cytochrome c assembly protein), IPR005018 (DOMON domain), IPR006593 (Cytochrome b561/ferric reductase transmembrane), IPR019545 (DM13 domain)	GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf01774g05001.1	sp|Q6D437|MSBA_PECAS	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf03977g03005.1	emb|CDY21026.1|	*-*-	BnaA08g24990D [Brassica napus]		
Niben101Scf09116g01006.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01327g01022.1	sp|Q6Z6W2|MAD57_ORYSJ	*-*-	MADS-box transcription factor 57	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03689g01006.1	sp|A4QK17|PSAB_ARAHI	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00113g05006.1	AT3G25160.1	****	ER lumen protein retaining receptor family protein LENGTH=272	IPR000133 (ER lumen protein retaining receptor)	GO:0006621 (protein retention in ER lumen), GO:0016021 (integral component of membrane), GO:0046923 (ER retention sequence binding)
Niben101Scf02041g04007.1	sp|Q8YRL4|ISPT2_NOSS1	****	Isoprenyl transferase 2	IPR001441 (Decaprenyl diphosphate synthase-like)	GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf06394g01007.1	sp|Q7WTR3|MDTK_ERWAM	*-*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf04396g02005.1	sp|Q27409|FP1_MYTGA	*-*-	Adhesive plaque matrix protein		
Niben101Scf15963g01021.1	sp|Q8T197|DHRS7_DICDI	****	Dehydrogenase/reductase SDR family protein 7-like	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf04437g04001.1	sp|Q9LQR0|LBD1_ARATH	***-	LOB domain-containing protein 1	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf03850g00006.1	AT4G23810.1	****	WRKY family transcription factor LENGTH=324	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00152g23006.1	AT1G75580.1	***-	SAUR-like auxin-responsive protein family LENGTH=108	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf04024g02025.1	sp|Q9V464|ASF1_DROME	***-	Histone chaperone asf1	IPR006818 (Histone chaperone, ASF1-like)	GO:0005634 (nucleus), GO:0006333 (chromatin assembly or disassembly)
Niben101Scf01994g02017.1	sp|Q8RV04|TI141_ARATH	***-	Mitochondrial import inner membrane translocase subunit TIM14-1	IPR001623 (DnaJ domain)	
Niben101Scf02797g01008.1	sp|P38166|SFT2_YEAST	****	Protein transport protein SFT2	IPR007305 (Vesicle transport protein, Got1/SFT2-like)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf10259g00009.1	AT3G61050.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=510	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf06864g02007.1	AT5G01920.1	****	Protein kinase superfamily protein LENGTH=495	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00028g03005.1	sp|Q9M9R6|PPR43_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf11383g03007.1	sp|Q9M8S8|VTC4_ARATH	*-**	Inositol-phosphate phosphatase	IPR000760 (Inositol monophosphatase)	GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf05516g00011.1	AT4G08850.1	****	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01326g11003.1	sp|Q1LLA9|FTSH_RALME	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01072g03047.1	ref|XP_002524361.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF37972.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03236g02004.1	sp|B5LMP5|RK33_CICAR	***-	50S ribosomal protein L33, chloroplastic	IPR001705 (Ribosomal protein L33), IPR003683 (Cytochrome b6/f complex, subunit 5), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0009512 (cytochrome b6f complex)
Niben101Scf03852g02003.1	sp|Q96F63|CCD97_HUMAN	--*-	Coiled-coil domain-containing protein 97	IPR018613 (Protein of unknown function DUF2052, coiled-coil)	
Niben101Scf02408g00021.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01934g02011.1	sp|Q9M2J5|MCC16_ARATH	*-*-	MATH domain and coiled-coil domain-containing protein	IPR008974 (TRAF-like)	GO:0005515 (protein binding)
Niben101Scf00339g05026.1	ref|NP_001288856.1|	****	mitochondrial outer membrane protein porin 3-like [Brassica rapa] gb|AAS21632.1| voltage-dependent anion-selective channel protein [Brassica rapa]	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0006820 (anion transport), GO:0008308 (voltage-gated anion channel activity), GO:0044070 (regulation of anion transport), GO:0055085 (transmembrane transport)
Niben101Scf00466g03015.1	AT2G16530.1	***-	3-oxo-5-alpha-steroid 4-dehydrogenase family protein LENGTH=343	IPR001104 (3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal)	GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
Niben101Scf13643g00001.1	sp|Q7Y223|MAN2_ARATH	*-*-	Mannan endo-1,4-beta-mannosidase 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf00777g03019.1	AT5G25540.1	***-	CTC-interacting domain 6 LENGTH=175	IPR003892 (Ubiquitin system component Cue)	GO:0005515 (protein binding)
Niben101Scf01596g10005.1	gb|KEH31349.1|	***-	stress up-regulated Nod 19 protein [Medicago truncatula]	IPR011692 (Stress up-regulated Nod 19)	
Niben101Scf04118g02003.1	emb|CDY53374.1|	*-*-	BnaC03g75400D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf26775g00014.1			Unknown protein		
Niben101Scf03028g03018.1	dbj|BAM36190.1|	***-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf04109g03011.1	emb|CDX85458.1|	***-	BnaA02g03550D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf04393g00014.1	AT2G12190.1	***-	Cytochrome P450 superfamily protein LENGTH=512	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07417g01007.1	ref|XP_007034445.1|	*-*-	RING/U-box superfamily protein, putative isoform 1 [Theobroma cacao] gb|EOY05371.1| RING/U-box superfamily protein, putative isoform 1 [Theobroma cacao]		
Niben101Scf01374g14004.1	sp|Q8LAL2|IAA26_ARATH	***-	Auxin-responsive protein IAA26	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf01998g00005.1	sp|Q9C514|RS71_ARATH	*-*-	40S ribosomal protein S7-1	IPR000554 (Ribosomal protein S7e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04794g01013.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01968g01014.1	gb|AIE73986.1|	****	Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Synechocystis sp. PCC 6714]	IPR004794 (Riboflavin biosynthesis protein RibD), IPR024072 (Dihydrofolate reductase-like domain)	GO:0003824 (catalytic activity), GO:0008270 (zinc ion binding), GO:0008703 (5-amino-6-(5-phosphoribosylamino)uracil reductase activity), GO:0008835 (diaminohydroxyphosphoribosylaminopyrimidine deaminase activity), GO:0009231 (riboflavin biosynthetic process), GO:0016787 (hydrolase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf19995g02003.1	sp|Q9C9U3|DOX2_ARATH	*-*-	Alpha-dioxygenase 2	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02375g03012.1	ref|WP_028294775.1|	--*-	phosphoenolpyruvate carboxylase [Oceanobacter kriegii]		
Niben101Scf09242g00007.1	ref|NP_001149203.1|	***-	seed specific protein Bn15D1B [Zea mays] gb|ACG34551.1| seed specific protein Bn15D1B [Zea mays]		
Niben101Scf04632g10008.1	sp|Q1QET5|DNAJ_PSYCK	--*-	Chaperone protein DnaJ	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf07493g03007.1	sp|P0CB38|PAB4L_HUMAN	*-**	Polyadenylate-binding protein 4-like	IPR006515 (Polyadenylate binding protein, human types 1, 2, 3, 4), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf03249g01001.1			Unknown protein		
Niben101Scf02816g09004.1	sp|P37878|3MGA_BACSU	--**	DNA-3-methyladenine glycosylase	IPR011257 (DNA glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair)
Niben101Scf11557g01009.1	sp|O82811|NRT21_ARATH	***-	High-affinity nitrate transporter 2.1	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf05166g06002.1	sp|P40973|PLY_LILLO	****	Pectate lyase	IPR007524 (Pectate lyase, N-terminal), IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	GO:0030570 (pectate lyase activity)
Niben101Scf08601g00002.1	AT3G55080.1	*-*-	SET domain-containing protein LENGTH=463	IPR015353 (Rubisco LSMT, substrate-binding domain)	
Niben101Scf02289g02009.1	sp|Q9LEZ3|BIM1_ARATH	*-*-	Transcription factor BIM1	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01124g10001.1	sp|Q67KP0|NUOH2_SYMTH	*-*-	NADH-quinone oxidoreductase subunit H 2	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf10314g01003.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor)	
Niben101Scf03444g04010.1	sp|P19950|RS141_MAIZE	*-*-	40S ribosomal protein S14	IPR001971 (Ribosomal protein S11)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02581g03002.1	sp|Q9BXT4|TDRD1_HUMAN	*-*-	Tudor domain-containing protein 1	IPR016685 (RNA-induced silencing complex, nuclease component Tudor-SN)	GO:0016442 (RISC complex), GO:0031047 (gene silencing by RNA)
Niben101Scf02249g02012.1	sp|Q9FNP8|RS193_ARATH	***-	40S ribosomal protein S19-3	IPR001266 (Ribosomal protein S19e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01124g23011.1	dbj|BAB08591.1|	*-*-	trigger factor-like protein [Arabidopsis thaliana]	IPR004147 (UbiB domain), IPR008880 (Trigger factor, C-terminal domain)	GO:0006457 (protein folding), GO:0015031 (protein transport)
Niben101Scf07564g01019.1	sp|B0K4Z5|HTPX_THEPX	*-*-	Protease HtpX homolog	IPR001915 (Peptidase M48)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf04485g02015.1	sp|P55200|KMT2A_MOUSE	*-**	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR007728 (Pre-SET domain), IPR018848 (WIYLD domain), IPR025776 (Histone-lysine N-methyltransferase SUVR1/2/4)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation)
Niben101Scf03422g04026.1	AT1G15220.1	***-	cytochrome c biogenesis protein family LENGTH=159	IPR005616 (Cytochrome C biogenesis protein CcmH)	
Niben101Scf00486g01002.1	sp|Q940S0|TMN2_ARATH	*-*-	Transmembrane 9 superfamily member 2	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf01269g03010.1	AT2G42850.1	***-	cytochrome P450, family 718 LENGTH=485	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00726g02004.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02929g01011.1	sp|Q09FY3|RK2_PLAOC	--*-	50S ribosomal protein L2, chloroplastic	IPR014722 (Ribosomal protein L2 domain 2)	
Niben101Scf05804g03006.1	sp|Q9FEW9|OPR3_SOLLC	****	12-oxophytodienoate reductase 3	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02907g06028.1	sp|P12311|ADH1_GEOSE	*-*-	Alcohol dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02521g01010.1	sp|P0C8K4|RPB2_ASFP4	*-**	DNA-directed RNA polymerase subunit 2	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf02073g04008.1	emb|CDY42744.1|	--*-	BnaA03g47950D [Brassica napus]		
Niben101Scf06986g00011.1	sp|Q9CAG5|PUB7_ARATH	*-*-	U-box domain-containing protein 7	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00917g04005.1	sp|Q9FKS8|LHT1_ARATH	***-	Lysine histidine transporter 1	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf00439g10049.1	sp|A6LDR9|RF1_PARD8	--**	Peptide chain release factor 1	IPR000352 (Peptide chain release factor class I/class II)	GO:0003747 (translation release factor activity), GO:0006415 (translational termination)
Niben101Scf03050g03007.1	sp|Q1PFD1|BLH11_ARATH	***-	BEL1-like homeodomain protein 11	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg09156g00001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05363g00003.1	ref|XP_003589248.1|	*-*-	Pheromone receptor-like protein [Medicago truncatula] gb|AES59499.1| DUF1645 family protein [Medicago truncatula]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf01498g10003.1	sp|Q6C9R9|SFH5_YARLI	*-*-	Phosphatidylinositol transfer protein SFH5	IPR001071 (Cellular retinaldehyde binding/alpha-tocopherol transport), IPR009038 (GOLD), IPR011074 (CRAL/TRIO, N-terminal domain)	GO:0005215 (transporter activity), GO:0005622 (intracellular), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf11524g00010.1	sp|F4HWY6|MYO11_ARATH	*-*-	Myosin-11	IPR002710 (Dilute)	GO:0005515 (protein binding)
Niben101Scf01435g02001.1	AT4G10630.1	***-	Glutaredoxin family protein LENGTH=334	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf08355g04023.1	AT5G65590.1	****	Dof-type zinc finger DNA-binding family protein LENGTH=316	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf12084g01009.1	AT5G51900.1	***-	Cytochrome P450 family protein LENGTH=242	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01785g03011.1			Unknown protein		
Niben101Scf04406g07003.1	sp|Q9XIC7|SERK2_ARATH	*-*-	Somatic embryogenesis receptor kinase 2	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Scf08368g02012.1	sp|Q9ZU97|VAC14_ARATH	***-	Protein VAC14 homolog	IPR016024 (Armadillo-type fold), IPR021841 (Vacuolar protein 14 C-terminal Fig4-binding domain), IPR026825 (Vacuole morphology and inheritance protein 14)	GO:0005488 (binding), GO:0043550 (regulation of lipid kinase activity), GO:0070772 (PAS complex)
Niben101Scf04737g00007.1	sp|Q9FT52|ATP5H_ARATH	****	ATP synthase subunit d, mitochondrial	IPR008689 (ATPase, F0 complex, subunit D, mitochondrial)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf02564g11002.1	emb|CDY33930.1|	***-	BnaA02g30570D [Brassica napus]		
Niben101Scf00117g00006.1	sp|Q975I1|RL3_SULTO	***-	50S ribosomal protein L3	IPR000597 (Ribosomal protein L3), IPR009000 (Translation protein, beta-barrel domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00421g01016.1			Unknown protein		
Niben101Scf00581g01013.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03929g01008.1	sp|Q17QL9|T184C_BOVIN	***-	Transmembrane protein 184C	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184)	
Niben101Scf00457g09003.1	sp|O04375|2A5A_ARATH	****	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf05915g00003.1	sp|Q56XI1|PPR25_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04008g01012.1	sp|P07754|ADH3_EMENI	***-	Alcohol dehydrogenase 3	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08669g00014.1	AT4G33200.1	*-**	myosin, putative LENGTH=1522	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf04783g00015.1	sp|Q9M8J9|BPM2_ARATH	***-	BTB/POZ and MATH domain-containing protein 2	IPR008974 (TRAF-like), IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf07635g00001.1	sp|Q4L8A2|RL5_STAHJ	-**-	50S ribosomal protein L5	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05584g02011.1	sp|P43102|UBC4_CANAX	***-	Ubiquitin-conjugating enzyme E2 4	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf04714g03014.1	sp|A2X7Q3|YAB4_ORYSI	***-	Protein YABBY 4	IPR006780 (YABBY protein)	
Niben101Scf07276g00004.1	AT3G45640.1	****	mitogen-activated protein kinase 3 LENGTH=370	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00202g07004.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf15538g00046.1	gb|KEH17204.1|	*-*-	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf02289g08003.1			Unknown protein		
Niben101Scf33781g00006.1	gb|KEH17310.1|	****	O-acyltransferase WSD1-like protein [Medicago truncatula]	IPR009721 (O-acyltransferase, WSD1, C-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity)
Niben101Scf06726g00033.1	sp|Q54NU2|RAB1D_DICDI	***-	Ras-related protein Rab-1D	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf04119g03005.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf01795g18004.1	sp|Q9LSL9|PP445_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03325g00010.1	sp|Q8RF65|GLGA_FUSNN	*-*-	Glycogen synthase	IPR001296 (Glycosyl transferase, family 1), IPR028098 (Glycosyltransferase subfamily 4, N-terminal domain)	GO:0009058 (biosynthetic process)
Niben101Ctg15228g00001.1	sp|Q1K8G0|CBL_NEUCR	*-**	Cystathionine beta-lyase	IPR000277 (Cys/Met metabolism, pyridoxal phosphate-dependent enzyme), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004121 (cystathionine beta-lyase activity), GO:0030170 (pyridoxal phosphate binding), GO:0071266 ('de novo' L-methionine biosynthetic process)
Niben101Scf04292g13003.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf05467g00024.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf05688g10002.1	ref|XP_007022630.1|	*-**	Kinase superfamily protein with octic with octicosapeptide/Phox/Bem1p domain, putative isoform 1 [Theobroma cacao]	IPR000270 (Phox/Bem1p), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00626g01003.1	sp|Q2TBL4|RPC3_BOVIN	****	DNA-directed RNA polymerase III subunit RPC3	IPR008806 (RNA polymerase III Rpc82, C -terminal), IPR013197 (RNA polymerase III subunit RPC82-related, helix-turn-helix)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf04801g01029.1	AT5G62840.1	*-*-	Phosphoglycerate mutase family protein LENGTH=297	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf00687g04016.1	sp|O14649|KCNK3_HUMAN	*-**	Potassium channel subfamily K member 3	IPR003280 (Two pore domain potassium channel)	GO:0005267 (potassium channel activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf11823g00016.1	sp|Q42430|ZFP1_WHEAT	***-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf00752g02008.1			Unknown protein		
Niben101Scf06684g01005.1	sp|Q1CZI7|HTPG_MYXXD	*-*-	Chaperone protein HtpG	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf08231g00011.1			Unknown protein		
Niben101Scf00759g01006.1	sp|O34358|HTRA_BACSU	*-**	Serine protease Do-like HtrA	IPR001940 (Peptidase S1C), IPR009003 (Trypsin-like cysteine/serine peptidase domain), IPR015724 (Serine endopeptidase DegP2)	GO:0003824 (catalytic activity), GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis)
Niben101Scf01899g00004.1	sp|Q9LTW0|ALIS1_ARATH	*-*-	ALA-interacting subunit 1	IPR005045 (CDC50/LEM3 family)	GO:0016020 (membrane)
Niben101Scf07105g02002.1	sp|Q2HJJ0|KLC4_BOVIN	--*-	Kinesin light chain 4	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02989g01021.1	sp|Q9LHE9|MYO1_ARATH	*-*-	Myosin-1	IPR000048 (IQ motif, EF-hand binding site), IPR027401 (Myosin-like IQ motif-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf04563g01016.1	AT2G41380.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=269	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01543g00001.1	sp|Q9FLV4|Y5248_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain)	
Niben101Scf02526g02004.1	AT4G24130.1	***-	Protein of unknown function, DUF538 LENGTH=157	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf22486g00001.1	sp|Q9ZRR8|CHS1_CASGL	***-	Chalcone synthase	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0009058 (biosynthetic process), GO:0016746 (transferase activity, transferring acyl groups), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf13316g00002.1	sp|Q9C9U3|DOX2_ARATH	***-	Alpha-dioxygenase 2	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02201g00010.1	AT4G38370.1	***-	Phosphoglycerate mutase family protein LENGTH=225	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf08334g02001.1	sp|Q08DE5|EI24_BOVIN	***-	Etoposide-induced protein 2.4 homolog	IPR009890 (Etoposide-induced 2.4)	
Niben101Scf00506g01014.1	dbj|BAB02370.1|	***-	leucine-rich repeat protein;	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf02274g01008.1	AT3G17980.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=177	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf05592g00016.1	ref|XP_003626920.1|	*-**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00487g00008.1	emb|CAA67813.1|	*-*-	extensin-like protein Dif10 [Solanum lycopersicum]		
Niben101Scf02576g00015.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]		
Niben101Scf08194g01019.1	sp|Q9PK53|DNAJ_CHLMU	***-	Chaperone protein DnaJ	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf04632g03006.1	emb|CAA62734.1|	***-	beta-fructofuranosidase (invertase) [Solanum lycopersicum]	IPR001362 (Glycoside hydrolase, family 32), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00736g01012.1	sp|Q9SYH4|NFYA5_ARATH	****	Nuclear transcription factor Y subunit A-5	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0016602 (CCAAT-binding factor complex)
Niben101Scf01375g06007.1	ref|WP_002557999.1|	--*-	p76 membrane protein precursor [Mycoplasma flocculare] gb|ENX50732.1| p76 membrane protein precursor [Mycoplasma flocculare ATCC 27716]		
Niben101Scf03389g00028.1	AT1G50820.1	*-*-	Aminotransferase-like, plant mobile domain family protein LENGTH=528	IPR006904 (Protein of unknown function DUF716 (TMEM45)), IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf08609g00017.1	emb|CDX90677.1|	***-	BnaA03g41040D [Brassica napus]		
Niben101Scf03337g06015.1	sp|Q9SHC8|VAP12_ARATH	***-	Vesicle-associated protein 1-2	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf08975g02021.1	sp|Q9LHQ7|MCES1_ARATH	****	mRNA cap guanine-N7 methyltransferase 1	IPR016899 (mRNA (guanine-N(7))-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0004482 (mRNA (guanine-N7-)-methyltransferase activity), GO:0005634 (nucleus), GO:0006370 (7-methylguanosine mRNA capping)
Niben101Scf04422g09001.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf07365g01031.1	sp|Q2JL51|GATA_SYNJB	***-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf12855g00009.1	sp|Q5KQN0|CAX2_ORYSJ	***-	Vacuolar cation/proton exchanger 2	IPR004837 (Sodium/calcium exchanger membrane region)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01982g01005.1	sp|P53471|ACT2_SCHMA	***-	Actin-2	IPR004000 (Actin family)	
Niben101Scf15496g00007.1	ref|NP_001053680.1|	*-*-	product [Oryza sativa Japonica Group]	IPR007650 (Zf-FLZ domain)	
Niben101Scf02968g02007.1	sp|P0C8Q0|UBX1_EMENI	***-	UBX domain-containing protein 1	IPR009060 (UBA-like), IPR012989 (SEP domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf20034g00014.1	sp|Q80XQ2|TBCD5_MOUSE	*-*-	TBC1 domain family member 5	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf02346g03015.1	sp|Q17TI5|BRX_ARATH	***-	Protein BREVIS RADIX	IPR013591 (Brevis radix (BRX) domain)	
Niben101Scf03486g03012.1	sp|O42993|FKBP_SCHPO	*-*-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf09025g02028.1	sp|Q9CZ49|KLH35_MOUSE	*-*-	Kelch-like protein 35	IPR015915 (Kelch-type beta propeller), IPR015916 (Galactose oxidase, beta-propeller), IPR025183 (Domain of unknown function DUF4110)	GO:0005515 (protein binding)
Niben101Scf00321g01008.1			Unknown protein		
Niben101Scf00072g10012.1	AT5G16530.1	***-	Auxin efflux carrier family protein LENGTH=351	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf07953g00013.1	AT1G03780.3	***-	targeting protein for XKLP2 LENGTH=790	IPR009675 (TPX2), IPR027329 (TPX2, C-terminal domain), IPR027330 (TPX2 central domain)	GO:0005819 (spindle), GO:0005874 (microtubule), GO:0007067 (mitotic nuclear division)
Niben101Scf01063g02005.1	sp|Q9H7X0|NAA60_HUMAN	****	N-alpha-acetyltransferase 60	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf00176g09014.1	sp|Q5KWZ8|DNAJ_GEOKA	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf08357g03009.1	sp|Q9LXF4|PP384_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07198g00003.1	AT3G02750.3	***-	Protein phosphatase 2C family protein LENGTH=527	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf02827g08001.1	sp|P29828|PDI_MEDSA	***-	Protein disulfide-isomerase	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf01445g02008.1	AT2G05940.1	****	Protein kinase superfamily protein LENGTH=462	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00761g00006.1	sp|O80995|DEF14_ARATH	***-	Defensin-like protein 14	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf00793g01001.1	sp|Q8JZR0|ACSL5_MOUSE	***-	Long-chain-fatty-acid--CoA ligase 5	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00870g00003.1	sp|Q940T9|COL4_ARATH	*-**	Zinc finger protein CONSTANS-LIKE 4	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf03133g01004.1	ref|XP_010103716.1|	--*-	Sentrin-specific protease 1 [Morus notabilis] gb|EXB96858.1| Sentrin-specific protease 1 [Morus notabilis]		
Niben101Scf00378g00002.1	sp|Q63704|CPT1B_RAT	--*-	Carnitine O-palmitoyltransferase 1, muscle isoform		
Niben101Scf08693g00012.1	gb|AET01485.2|	***-	Avr9/Cf-9 rapidly elicited protein [Medicago truncatula]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf07792g02004.1	sp|P38389|SC61B_ARATH	*-*-	Protein transport protein Sec61 subunit beta	IPR016482 (Protein transport protein SecG/Sec61-beta/Sbh1)	
Niben101Scf08211g03016.1	sp|Q8PV35|RS8_METMA	***-	30S ribosomal protein S8	IPR000630 (Ribosomal protein S8)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04185g02003.1			Unknown protein		
Niben101Scf04871g16002.1	sp|Q04715|RM16_PETHY	*-*-	60S ribosomal protein L16, mitochondrial	IPR000114 (Ribosomal protein L16), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf00305g03012.1	sp|Q8VZA1|LAC11_ARATH	***-	Laccase-11	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06077g04010.1	sp|Q9M2C0|VITH4_ARATH	*-*-	Vacuolar iron transporter homolog 4	IPR008217 (Ccc1 family)	
Niben101Scf03256g01003.1	sp|Q6Z3U3|Y7797_ORYSJ	***-	B3 domain-containing protein	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf00096g03007.1	AT2G42130.4	***-	Plastid-lipid associated protein PAP / fibrillin family protein LENGTH=299	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf09215g00003.1	AT1G21150.1	****	Mitochondrial transcription termination factor family protein LENGTH=390	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01856g00016.1	sp|Q96GK7|FAH2A_HUMAN	***-	Fumarylacetoacetate hydrolase domain-containing protein 2A	IPR011234 (Fumarylacetoacetase, C-terminal-related)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00017g00026.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00869g03009.1	sp|Q9FNA2|PAO1_ARATH	***-	Polyamine oxidase 1	IPR002937 (Amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00800g04005.1	sp|O31904|YORJ_BACSU	--*-	SPBc2 prophage-derived uncharacterized protein YorJ	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02752g07003.1	sp|O65743|RL24_CICAR	***-	60S ribosomal protein L24	IPR000988 (Ribosomal protein L24e-related), IPR023441 (Ribosomal protein L24e domain), IPR023442 (Ribosomal protein L24e, conserved site)	
Niben101Scf10103g02003.1	sp|Q3ZCA2|CPSF5_BOVIN	****	Cleavage and polyadenylation specificity factor subunit 5	IPR015797 (NUDIX hydrolase domain-like), IPR016706 (Cleavage/polyadenylation specificity factor subunit 5)	GO:0003729 (mRNA binding), GO:0005849 (mRNA cleavage factor complex), GO:0006378 (mRNA polyadenylation), GO:0016787 (hydrolase activity)
Niben101Scf07466g06022.1	AT5G57200.1	*-*-	ENTH/ANTH/VHS superfamily protein LENGTH=591	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf02314g00020.1	emb|CDY29265.1|	***-	BnaC01g19170D [Brassica napus]		
Niben101Scf01696g06056.1	AT5G53010.1	***-	calcium-transporting ATPase, putative LENGTH=1049	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf00530g08012.1			Unknown protein		
Niben101Scf05948g04001.1	AT2G26150.1	*-**	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08029g04004.1			Unknown protein		
Niben101Scf06954g03003.1	sp|Q9Y2K6|UBP20_HUMAN	*-**	Ubiquitin carboxyl-terminal hydrolase 20	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf02215g05011.1	ref|WP_028755364.1|	--*-	oxidoreductase [Rhizobium leucaenae]		
Niben101Scf00960g06002.1	sp|P01070|ITRA_SOYBN	-***	Trypsin inhibitor A	IPR002160 (Proteinase inhibitor I3, Kunitz legume)	GO:0004866 (endopeptidase inhibitor activity)
Niben101Scf00681g00005.1	AT3G27540.1	****	beta-1,4-N-acetylglucosaminyltransferase family protein LENGTH=390	IPR006813 (Glycosyl transferase, family 17)	GO:0003830 (beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity), GO:0006487 (protein N-linked glycosylation), GO:0016020 (membrane)
Niben101Scf00125g01016.1	sp|O54408|RELA_BACSU	*-*-	GTP pyrophosphokinase	IPR002912 (ACT domain), IPR007685 (RelA/SpoT), IPR012675 (Beta-grasp domain)	GO:0008152 (metabolic process), GO:0015969 (guanosine tetraphosphate metabolic process), GO:0016597 (amino acid binding)
Niben101Scf02232g06019.1	gb|EMT07289.1|	***-	Katanin p60 ATPase-containing subunit A-like protein 2 [Aegilops tauschii]	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf03756g01007.1	sp|Q10CQ1|MAD14_ORYSJ	***-	MADS-box transcription factor 14	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf30946g00023.1			Unknown protein		
Niben101Scf02066g05012.1	ref|XP_002516966.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF45580.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00199g05025.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00851g00023.1	sp|Q9SJF3|DCP1_ARATH	--*-	mRNA-decapping enzyme-like protein		
Niben101Scf01177g04007.1	sp|Q8VZ91|EF103_ARATH	*-**	Ethylene-responsive transcription factor 6	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain), IPR016177 (DNA-binding domain), IPR024729 (ICP0-binding domain of Ubiquitin-specific protease 7), IPR029346 (Ubiquitin carboxyl-terminal hydrolase, C-terminal)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf18068g00002.1	AT3G15750.1	*-*-	Essential protein Yae1, N-terminal LENGTH=199	IPR019191 (Essential protein Yae1, N-terminal)	
Niben101Scf13776g00011.1	AT1G66480.1	***-	plastid movement impaired 2 LENGTH=225	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf13776g01016.1	ref|WP_029317398.1|	****	copper oxidase [Bacillus subtilis]	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01576g01006.1	sp|Q8LDB8|RING2_ARATH	--*-	E3 ubiquitin-protein ligase	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08836g00001.1	sp|F4K687|NMNAT_ARATH	*-*-	Nicotinamide mononucleotide adenylyltransferase	IPR005248 (Probable nicotinate-nucleotide adenylyltransferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0009435 (NAD biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf02881g00009.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02972g02008.1	emb|CDX80420.1|	*-*-	BnaC07g30240D [Brassica napus]		
Niben101Scf06855g01013.1	gb|KEH43892.1|	***-	class IV aminotransferase [Medicago truncatula]	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03070g04002.1	sp|Q47LE7|NUOD_THEFY	*-*-	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	
Niben101Scf11417g00007.1	sp|P48619|FAD3C_RICCO	***-	Omega-3 fatty acid desaturase, chloroplastic	IPR005804 (Fatty acid desaturase, type 1), IPR021863 (Protein of unknown function DUF3474)	GO:0006629 (lipid metabolic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0055114 (oxidation-reduction process)
Niben101Scf00539g05008.1	sp|Q6GM16|NXN_XENLA	*-*-	Nucleoredoxin	IPR012336 (Thioredoxin-like fold)	
Niben101Scf02552g00013.1	AT4G34980.1	****	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf09989g01015.1			Unknown protein		
Niben101Scf01220g02014.1	sp|P17980|PRS6A_HUMAN	***-	26S protease regulatory subunit 6A	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf03274g01011.1	AT5G19940.1	***-	Plastid-lipid associated protein PAP / fibrillin family protein LENGTH=239	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf03643g02034.1	sp|P27527|RT19_PETHY	*-*-	Ribosomal protein S19, mitochondrial		
Niben101Scf03941g02002.1	sp|P32962|NRL2_ARATH	***-	Nitrilase 2	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf01745g05009.1	sp|B9FXV5|IF4G_ORYSJ	*-*-	Eukaryotic translation initiation factor 4G		
Niben101Scf02090g02005.1	AT3G18670.1	***-	Ankyrin repeat family protein LENGTH=598	IPR020683 (Ankyrin repeat-containing domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	GO:0005515 (protein binding)
Niben101Scf00276g00009.1	sp|Q9SB50|AP4M_ARATH	****	AP-4 complex subunit mu	IPR001392 (Clathrin adaptor, mu subunit), IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf09907g01005.1	sp|Q0WN60|PPR48_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04619g01013.1	sp|Q9XG54|OPR1_SOLLC	****	12-oxophytodienoate reductase 1	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04177g02002.1	sp|Q54K50|PLDY_DICDI	***-	Phospholipase D Y	IPR001736 (Phospholipase D/Transphosphatidylase), IPR025202 (Phospholipase D-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03045g08005.1	sp|O22715|AP1M2_ARATH	****	AP-1 complex subunit mu-2	IPR001392 (Clathrin adaptor, mu subunit), IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf00370g03008.1	sp|O04034|CCX5_ARATH	***-	Cation/calcium exchanger 5	IPR004837 (Sodium/calcium exchanger membrane region)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02801g00001.1	AT1G75710.1	***-	C2H2-like zinc finger protein LENGTH=462	IPR007087 (Zinc finger, C2H2), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain)	GO:0003950 (NAD+ ADP-ribosyltransferase activity), GO:0046872 (metal ion binding)
Niben101Scf00820g03003.1	ref|WP_015115534.1|	***-	phage shock protein A (PspA) family protein [N [Nostoc sp. PCC 7107]	IPR007157 (PspA/IM30)	
Niben101Scf10448g00019.1	AT5G18070.1	****	phosphoglucosamine mutase-related LENGTH=556	IPR016657 (Phosphoacetylglucosamine mutase)	GO:0004610 (phosphoacetylglucosamine mutase activity), GO:0005975 (carbohydrate metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf04702g02005.1	dbj|BAE72100.1|	*-*-	ent-kaurene synthase like 5 [Oryza sativa Japonica Group]	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	
Niben101Scf06076g00010.1	sp|Q10CQ1|MAD14_ORYSJ	*-*-	MADS-box transcription factor 14	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf07241g00007.1	sp|Q7M1E7|PGLR2_CHAOB	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06631g00009.1	AT1G15660.1	*-*-	centromere protein C LENGTH=705		
Niben101Scf11361g01002.1	ref|WP_031800716.1|	*-*-	SagB-type dehydrogenase domain protein, partial [Pseudomonas aeruginosa]	IPR000415 (Nitroreductase-like)	GO:0016491 (oxidoreductase activity)
Niben101Scf02558g00023.1	sp|Q9SP35|TI172_ARATH	*-**	Mitochondrial import inner membrane translocase subunit TIM17-2	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	GO:0005744 (mitochondrial inner membrane presequence translocase complex), GO:0006886 (intracellular protein transport), GO:0015450 (P-P-bond-hydrolysis-driven protein transmembrane transporter activity)
Niben101Scf12266g02003.1	sp|B5X8M4|BRCC3_SALSA	***-	Lys-63-specific deubiquitinase BRCC36	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain)	GO:0005515 (protein binding)
Niben101Scf01066g02006.1	gb|KEH40671.1|	*-*-	pollen Ole e I family allergen [Medicago truncatula]	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf04286g00001.1	sp|Q9SCX8|PPA17_ARATH	****	Purple acid phosphatase 17	IPR024927 (Acid phosphatase, type 5), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity)
Niben101Scf06439g00010.1	AT2G43480.1	****	Peroxidase superfamily protein LENGTH=335	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02669g06001.1	sp|P10582|DPOM_MAIZE	*-**	DNA polymerase	IPR004868 (DNA-directed DNA polymerase, family B, mitochondria/virus), IPR012337 (Ribonuclease H-like domain), IPR023211 (DNA polymerase, palm domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf04327g02025.1			Unknown protein		
Niben101Scf02771g03015.1	AT3G09430.1	***-	unknown protein; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=301		
Niben101Scf06770g00003.1	gb|AFI44273.1|	****	rib L5 (mitochondrion) [Silene vulgaris]	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04124g00006.1	sp|Q9SHD1|EXPB4_ARATH	***-	Expansin-B4	IPR007117 (Expansin, cellulose-binding-like domain), IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf07250g02005.1	AT1G02110.1	***-	Protein of unknown function (DUF630 and DUF632) LENGTH=703	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf04276g04009.1	sp|Q8LD27|PSB6_ARATH	****	Proteasome subunit beta type-6	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf01764g00009.1	sp|O82204|RL281_ARATH	***-	60S ribosomal protein L28-1	IPR002672 (Ribosomal protein L28e), IPR029004 (Ribosomal L28e/Mak16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00825g02004.1	sp|Q9FRI5|PPR57_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00704g01010.1	sp|Q9STF0|LRKS3_ARATH	--*-	Receptor like protein kinase S.3		
Niben101Scf01432g06023.1	sp|O24150|CAMT3_TOBAC	****	Caffeoyl-CoA O-methyltransferase 3	IPR002935 (O-methyltransferase, family 3), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008171 (O-methyltransferase activity)
Niben101Scf02422g01012.1	AT1G64030.1	***-	serpin 3 LENGTH=385	IPR000215 (Serpin family), IPR023795 (Serpin, conserved site), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf07643g00009.1	sp|Q10Q08|RFA1B_ORYSJ	*-*-	Replication protein A 70 kDa DNA-binding subunit B	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf01669g04020.1			Unknown protein		
Niben101Scf27945g00025.1	ref|WP_023508058.1|	****	membrane protease subunit stomatin/prohibitin-like protein [Rickettsia monacensis] emb|CDI29842.1| membrane protease subunit stomatin/prohibitin-like protein [Rickettsia monacensis IrR/Munich]	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf09467g01001.1	sp|Q9ZSK5|ZOG_PHALU	*-*-	Zeatin O-glucosyltransferase		
Niben101Scf00090g02003.1	sp|Q5D869|NRPE1_ARATH	*-*-	DNA-directed RNA polymerase V subunit 1	IPR015801 (Copper amine oxidase, N2/N3-terminal), IPR021602 (Protein of unknown function DUF3223)	GO:0005507 (copper ion binding), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding)
Niben101Scf01055g02001.1	sp|Q9NQG5|RPR1B_HUMAN	*-*-	Regulation of nuclear pre-mRNA domain-containing protein 1B	IPR006569 (CID domain), IPR008942 (ENTH/VHS)	
Niben101Scf02563g01010.1	AT2G18500.1	*-*-	ovate family protein 7 LENGTH=315	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf02877g06001.1	sp|O65238|Y5537_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain)	
Niben101Scf02793g15016.1	AT2G37420.1	*-**	ATP binding microtubule motor family protein LENGTH=1039	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf03461g04011.1	sp|Q9ZUU0|WRK44_ARATH	*-**	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03685g00010.1	sp|O24144|CAMT1_TOBAC	****	Caffeoyl-CoA O-methyltransferase 1	IPR002935 (O-methyltransferase, family 3), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008171 (O-methyltransferase activity)
Niben101Scf00858g04013.1	sp|Q9U539|OCT1_CAEEL	****	Organic cation transporter 1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf06509g02006.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00568g04001.1	sp|Q8YMY2|RS2_NOSS1	****	30S ribosomal protein S2	IPR001865 (Ribosomal protein S2), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf14069g00002.1			Unknown protein		
Niben101Scf02881g00002.1	emb|CDY42334.1|	***-	BnaC02g17110D [Brassica napus]		
Niben101Scf03360g01003.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf07253g02010.1	gb|KFJ90135.1|	*-*-	acyl-CoA synthetase [Pseudomonas sp. 1-7]	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01115g02003.1	ref|XP_002517764.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF44571.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00730g00006.1	sp|O04450|TCPE_ARATH	*-*-	T-complex protein 1 subunit epsilon	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process)
Niben101Scf02734g01016.1	sp|Q54UK0|PLDA_DICDI	*-*-	Phospholipase D A	IPR000008 (C2 domain), IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0005515 (protein binding), GO:0008152 (metabolic process)
Niben101Scf00193g00016.1	AT3G11810.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=348		
Niben101Scf01517g05010.1	sp|C4ZXJ7|LLDD_ECOBW	***-	L-lactate dehydrogenase	IPR012133 (Alpha-hydroxy acid dehydrogenase, FMN-dependent), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02261g00006.1	AT5G07990.1	*-*-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09885g01014.1	ref|NP_001052354.1|	***-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf00428g11016.1	sp|A2WT95|PLA1_ORYSI	***-	Phospholipase A1-II 1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf07019g02011.1	ref|WP_032853289.1|	****	glycosyl hydrolase family 43 [Bacteroides sp. D2]	IPR006710 (Glycoside hydrolase, family 43), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02920g00013.1	sp|O64791|SY124_ARATH	***-	Syntaxin-124	IPR010989 (t-SNARE)	GO:0005515 (protein binding), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf07591g01007.1	sp|Q9X0H5|SYH_THEMA	***-	Histidine--tRNA ligase	IPR004516 (Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit)	GO:0005737 (cytoplasm)
Niben101Scf06155g01010.1	sp|Q5F478|ANR44_CHICK	--*-	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B	IPR020683 (Ankyrin repeat-containing domain)	
Niben101Scf03026g09003.1	AT4G39690.1	***-	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages;	IPR019133 (Mitochondrial inner membrane protein Mitofilin)	
Niben101Scf00161g03016.1	sp|P07954|FUMH_HUMAN	--*-	Fumarate hydratase, mitochondrial		
Niben101Ctg10118g00001.1	sp|Q8BM14|LIPK_MOUSE	*-*-	Lipase member K	IPR006693 (Partial AB-hydrolase lipase domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf02215g05018.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08391g03021.1	emb|CDX88130.1|	*-*-	BnaA06g27210D [Brassica napus]	IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf04764g07007.1	AT5G25590.1	*-*-	Protein of unknown function (DUF630 and DUF632) LENGTH=775	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf05306g00014.1	emb|CDX93386.1|	*-*-	BnaC04g45100D [Brassica napus]		
Niben101Scf01908g00003.1	AT1G74680.1	***-	Exostosin family protein LENGTH=461	IPR004263 (Exostosin-like)	
Niben101Scf00318g12004.1	sp|Q39110|GAOX1_ARATH	--*-	Gibberellin 20 oxidase 1	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf05082g01005.1	sp|Q9LQ16|PPR94_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf11566g00009.1	sp|Q84L08|GONS4_ARATH	*-*-	GDP-mannose transporter GONST4	IPR029663 (GDP-mannose transporter GONST4, plant)	GO:0005794 (Golgi apparatus), GO:0015780 (nucleotide-sugar transport)
Niben101Scf01112g02001.1	sp|Q8L4D8|IQD31_ARATH	***-	Protein IQ-DOMAIN 31	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf05109g02006.1	AT5G35200.1	***-	ENTH/ANTH/VHS superfamily protein LENGTH=544	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf08368g02011.1	sp|Q9Y6U7|RN215_HUMAN	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03755g01009.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR001878 (Zinc finger, CCHC-type), IPR007527 (Zinc finger, SWIM-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf07370g01009.1	AT5G03415.1	****	Transcription factor DP LENGTH=385	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR015648 (Transcription factor DP)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005667 (transcription factor complex), GO:0006355 (regulation of transcription, DNA-templated), GO:0007049 (cell cycle)
Niben101Scf01842g00004.1	sp|Q7TML3|S35F2_MOUSE	***-	Solute carrier family 35 member F2	IPR009262 (Solute carrier family 35 member SLC35F1/F2/F6)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf02468g02018.1	AT2G35585.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=156		
Niben101Scf06665g01023.1	sp|Q9M9M4|CSLD3_ARATH	****	Cellulose synthase-like protein D3	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf01593g06002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00370g03002.1	AT1G54850.1	*-*-	HSP20-like chaperones superfamily protein LENGTH=206	IPR008978 (HSP20-like chaperone)	
Niben101Scf03396g07026.1	gb|AAU90295.2|	***-	Disease resistance protein I2, putative [Solanum demissum]		
Niben101Scf05494g01016.1	ref|XP_007042434.1|	***-	Cold regulated gene 27, putative isoform 1 [Theobroma cacao] gb|EOX98265.1| Cold regulated gene 27, putative isoform 1 [Theobroma cacao]		
Niben101Scf08724g00011.1	sp|Q9LZQ1|TBL6_ARATH	*-*-	Protein trichome birefringence-like 6	IPR026057 (PC-Esterase)	
Niben101Scf03036g03010.1	AT2G43235.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=437		
Niben101Scf02749g05042.1	emb|CDY25682.1|	***-	BnaC03g69930D [Brassica napus]	IPR007650 (Zf-FLZ domain)	
Niben101Scf03405g04011.1	sp|C4Y4R9|MZM1_CLAL4	-**-	Mitochondrial zinc maintenance protein 1, mitochondrial	IPR008011 (Complex 1 LYR protein)	
Niben101Scf03770g02001.1	AT3G17611.1	***-	RHOMBOID-like protein 14 LENGTH=334	IPR001876 (Zinc finger, RanBP2-type), IPR022764 (Peptidase S54, rhomboid domain)	GO:0004252 (serine-type endopeptidase activity), GO:0008270 (zinc ion binding), GO:0016021 (integral component of membrane)
Niben101Scf02245g01017.1	sp|Q7N5C1|AQPZ_PHOLL	*-*-	Aquaporin Z	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01717g01003.1	gb|ABV21218.1|	***-	[Arabidopsis thaliana]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf01998g00002.1	sp|Q2HFP1|IF4A_CHAGB	****	ATP-dependent RNA helicase eIF4A	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf06969g00003.1	sp|O80340|ERF78_ARATH	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08633g00003.1	sp|Q9LJR7|XTH3_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 3	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf04156g01022.1	ref|NP_001275373.1|	*-*-	cell growth defect factor-like [Solanum tuberosum] gb|ABB29947.1| cell growth defect factor-like [Solanum tuberosum]		
Niben101Scf01687g00004.1	gb|KEH32558.1|	--*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf00138g04001.1	sp|Q5Z6B6|NAC76_ORYSJ	***-	NAC domain-containing protein 76	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11621g01019.1	sp|Q9NSI2|F207A_HUMAN	--*-	Protein FAM207A		
Niben101Scf02468g05004.1	sp|Q9LRR2|TPS17_ARATH	*-**	Terpenoid synthase 17	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Ctg12434g00004.1	AT1G20550.1	*-*-	O-fucosyltransferase family protein LENGTH=564	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf05688g10001.1	sp|Q8X1X3|G3P_PARBA	***-	Glyceraldehyde-3-phosphate dehydrogenase	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf18774g01006.1	gb|AED02502.1|	***-	xyloglucan-specific endoglucanase inhibitor [Solanum tuberosum]	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04156g00009.1	sp|P49599|P2C57_ARATH	****	Protein phosphatase 2C 57	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf04500g02004.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03985g02026.1	ref|XP_007040445.1|	***-	Ubiquitin ligase protein cop1, putative isoform 6 [Theobroma cacao] gb|EOY24946.1| Ubiquitin ligase protein cop1, putative isoform 6 [Theobroma cacao]	IPR011009 (Protein kinase-like domain), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00262g01005.1	sp|Q9SS81|PP221_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf12673g00002.1	gb|ABA98491.1|	--*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf29041g00003.1	sp|Q9C9I6|PP116_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf10053g00011.1	sp|Q9MA90|PNC1_ARATH	***-	Peroxisomal adenine nucleotide carrier 1	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf08334g02004.1	sp|Q9JJC8|NIPA2_MOUSE	****	Magnesium transporter NIPA2	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf14009g01002.1	AT1G79220.1	****	Mitochondrial transcription termination factor family protein LENGTH=399	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02207g04009.1	AT1G19100.1	*-*-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=663		
Niben101Scf01596g10009.1	sp|Q54RB9|CMC_DICDI	*-**	Calcium-binding mitochondrial carrier protein	IPR002067 (Mitochondrial carrier protein), IPR011992 (EF-hand domain pair), IPR023395 (Mitochondrial carrier domain)	GO:0005509 (calcium ion binding), GO:0055085 (transmembrane transport)
Niben101Scf06958g02005.1	AT1G10370.1	***-	Glutathione S-transferase family protein LENGTH=227	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf02705g02016.1			Unknown protein		
Niben101Scf02913g00018.1	AT3G50150.1	***-	Plant protein of unknown function (DUF247) LENGTH=509	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf01599g00011.1			Unknown protein		
Niben101Ctg16056g00001.1	AT4G03500.1	*-*-	Ankyrin repeat family protein LENGTH=652	IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	
Niben101Scf00090g11003.1			Unknown protein		
Niben101Scf04627g02005.1	sp|A4XP61|ARGA_PSEMY	*-**	Amino-acid acetyltransferase	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf05298g04002.1	sp|Q5ZML3|SRSF1_CHICK	***-	Serine/arginine-rich splicing factor 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01464g01005.1	sp|A2XCH8|CKS1_ORYSI	****	Cyclin-dependent kinases regulatory subunit 1	IPR000789 (Cyclin-dependent kinase, regulatory subunit)	GO:0007049 (cell cycle), GO:0016538 (cyclin-dependent protein serine/threonine kinase regulator activity)
Niben101Scf00621g12014.1	AT4G13110.1	*-*-	BSD domain-containing protein LENGTH=316	IPR005607 (BSD)	
Niben101Scf00537g01001.1	emb|CDY28050.1|	***-	BnaC05g44520D [Brassica napus]		
Niben101Scf01738g06003.1	sp|Q9M390|PTR1_ARATH	*-*-	Protein NRT1/ PTR FAMILY 8.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01089g01015.1	sp|Q9UYB2|SUA5_PYRAB	*-*-	Threonylcarbamoyl-AMP synthase	IPR017945 (DHBP synthase RibB-like alpha/beta domain)	GO:0003725 (double-stranded RNA binding)
Niben101Scf08015g03003.1			Unknown protein		
Niben101Scf02818g01019.1	sp|P93092|ACP1_CASGL	***-	Acyl carrier protein 1, chloroplastic	IPR009081 (Acyl carrier protein-like)	
Niben101Scf11361g02029.1	sp|Q9SLN5|MAP1A_ARATH	****	Methionine aminopeptidase 1A	IPR000994 (Peptidase M24, structural domain), IPR001714 (Peptidase M24, methionine aminopeptidase)	GO:0004177 (aminopeptidase activity), GO:0006508 (proteolysis), GO:0008235 (metalloexopeptidase activity)
Niben101Scf08863g01035.1	AT5G39410.1	***-	Saccharopine dehydrogenase LENGTH=454	IPR005097 (Saccharopine dehydrogenase / Homospermidine synthase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Ctg03622g00002.1			Unknown protein	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain)	
Niben101Scf00715g09001.1	sp|Q9C5T4|WRK18_ARATH	****	WRKY transcription factor 18	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf10737g00026.1	ref|XP_003610227.1|	*-*-	Ycf68 [Medicago truncatula]	IPR022546 (Uncharacterised protein family Ycf68)	
Niben101Scf11944g00016.1	sp|Q9LVY1|TAT_ARATH	*-*-	Tyrosine aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf04700g03007.1	sp|Q8S8M9|ALFL6_ARATH	*-*-	PHD finger protein ALFIN-LIKE 6	IPR021998 (Alfin)	GO:0006355 (regulation of transcription, DNA-templated), GO:0042393 (histone binding)
Niben101Scf03562g03007.1	AT3G27000.1	****	actin related protein 2 LENGTH=389	IPR004000 (Actin family)	GO:0005524 (ATP binding), GO:0005856 (cytoskeleton), GO:0005885 (Arp2/3 protein complex), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf03978g09005.1	AT4G17720.1	*-**	RNA-binding (RRM/RBD/RNP motifs) family protein LENGTH=313	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04731g11005.1	sp|Q5Q0H2|FLA19_ARATH	*-*-	Fasciclin-like arabinogalactan protein 19	IPR000782 (FAS1 domain)	
Niben101Scf02356g00014.1	AT1G08800.1	*-*-	Protein of unknown function, DUF593 LENGTH=1113	IPR007656 (Zein-binding domain)	
Niben101Scf01673g02002.1	sp|Q8S9L6|CRK29_ARATH	*-**	Cysteine-rich receptor-like protein kinase 29	IPR011009 (Protein kinase-like domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02461g05001.1	AT5G47750.1	****	D6 protein kinase like 2 LENGTH=586	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00812g02013.1	sp|Q9SX45|PPR75_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf17876g00001.1			Unknown protein		
Niben101Scf00341g09021.1	sp|Q9LVQ0|PME31_ARATH	****	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf07980g01014.1	sp|P38055|YDJE_ECOLI	*-**	Inner membrane metabolite transport protein YdjE	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04794g00015.1	gb|KEH17480.1|	*-*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf05132g03011.1			Unknown protein		
Niben101Scf00557g03004.1	AT2G44380.1	***-	Cysteine/Histidine-rich C1 domain family protein LENGTH=247	IPR011424 (C1-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04989g03001.1	sp|Q9T076|ENL2_ARATH	*-*-	Early nodulin-like protein 2	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf00530g06015.1	AT5G24130.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). LENGTH=316		
Niben101Scf01702g00001.1	AT1G20225.1	***-	Thioredoxin superfamily protein LENGTH=233	IPR012336 (Thioredoxin-like fold)	
Niben101Scf14526g02015.1	sp|Q9S7R3|LSH10_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	IPR006936 (ALOG domain)	
Niben101Scf01890g01008.1	sp|P53756|PDR18_YEAST	*-**	ABC transporter ATP-binding protein/permease PDR18	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf04021g06010.1	emb|CDX90122.1|	*-*-	BnaA08g18620D [Brassica napus]	IPR026960 (Reverse transcriptase zinc-binding domain)	
Niben101Scf00813g01005.1	sp|Q9LNU6|PPR53_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07236g00009.1	sp|Q54YG5|TPPC5_DICDI	***-	Trafficking protein particle complex subunit 5	IPR007194 (Transport protein particle (TRAPP) component), IPR024096 (NO signalling/Golgi transport  ligand-binding domain)	
Niben101Scf13676g00006.1	emb|CDY34348.1|	*-*-	BnaA01g14510D [Brassica napus]		
Niben101Scf02805g05009.1	sp|F4I1S7|ELP2_ARATH	***-	Elongator complex protein 2	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00168g01001.1	AT4G39210.1	****	Glucose-1-phosphate adenylyltransferase family protein LENGTH=521	IPR011004 (Trimeric LpxA-like), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005978 (glycogen biosynthetic process), GO:0008878 (glucose-1-phosphate adenylyltransferase activity), GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf07778g03021.1	sp|Q9FLS0|FB253_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00465g00009.1			Unknown protein		
Niben101Ctg07261g00001.1	sp|Q9FM96|PSL4_ARATH	*-*-	Glucosidase 2 subunit beta	IPR009011 (Mannose-6-phosphate receptor binding domain)	
Niben101Scf00860g00006.1	sp|B1XQ70|GLO2_SYNP2	****	Hydroxyacylglutathione hydrolase	IPR017782 (Hydroxyacylglutathione hydrolase)	GO:0004416 (hydroxyacylglutathione hydrolase activity), GO:0006750 (glutathione biosynthetic process), GO:0008270 (zinc ion binding)
Niben101Scf00225g00003.1	sp|Q84MB3|ACCH1_ARATH	*-*-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf14843g01001.1	sp|Q6NKN9|BH074_ARATH	*-*-	Transcription factor bHLH74	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04629g03013.1	AT1G75330.1	****	ornithine carbamoyltransferase LENGTH=375	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR006130 (Aspartate/ornithine carbamoyltransferase), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0004585 (ornithine carbamoyltransferase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0006520 (cellular amino acid metabolic process), GO:0006591 (ornithine metabolic process), GO:0016597 (amino acid binding), GO:0016743 (carboxyl- or carbamoyltransferase activity), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf09092g00017.1	sp|Q2W3J7|NUON_MAGSA	*-*-	NADH-quinone oxidoreductase subunit N		
Niben101Scf01642g00015.1	sp|P0CN99|H2A_CRYNB	*-*-	Histone H2A	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf08374g07007.1	sp|Q9KIG4|PK1_STRTO	--**	Serine/threonine-protein kinase PK-1	IPR011009 (Protein kinase-like domain), IPR015661 (Mitotic checkpoint serine/threonine protein kinase Bub1/Mitotic spindle checkpoint component Mad3)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07937g02012.1	ref|XP_007034030.1|	***-	Pentatricopeptide repeat superfamily protein isoform 1 [Theobroma cacao] gb|EOY04956.1| Pentatricopeptide repeat superfamily protein isoform 1 [Theobroma cacao]	IPR012349 (FMN-binding split barrel)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02059g01015.1			Unknown protein		
Niben101Scf02658g05002.1	AT2G21210.1	***-	SAUR-like auxin-responsive protein family LENGTH=98	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf09353g06003.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07416g00021.1	sp|Q8RX28|HDA5_ARATH	*-*-	Histone deacetylase 5	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	
Niben101Scf01385g07001.1	ref|XP_002514414.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF48010.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00572g00009.1	AT1G64050.1	*-*-	unknown protein; Has 524 Blast hits to 342 proteins in 101 species: Archae - 0; Bacteria - 106; Metazoa - 106; Fungi - 24; Plants - 25; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink). LENGTH=668		
Niben101Scf11103g02003.1	sp|B8HXS0|FOLD_CYAP4	*-*-	Bifunctional protein FolD	IPR000672 (Tetrahydrofolate dehydrogenase/cyclohydrolase)	GO:0003824 (catalytic activity), GO:0004488 (methylenetetrahydrofolate dehydrogenase (NADP+) activity), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf01520g08030.1			Unknown protein		
Niben101Scf02798g00016.1	sp|P15688.2|NU2M_BETVU	*-*-	RecName: Full=NADH-ubiquinone oxidoreductase chain 2; AltName: Full=NADH dehydrogenase subunit 2 (mitochondrion) [Beta vulgaris] emb|CAA34728.1| NADH:ubiquinone reductase subunit 2 [Beta vulgaris subsp. vulgaris]		
Niben101Scf03167g02024.1	sp|Q7V2G1|TAL_PROMP	***-	Transaldolase	IPR001585 (Transaldolase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf21301g00001.1	sp|Q9CLW3|DUSB_PASMU	****	tRNA-dihydrouridine synthase B	IPR001269 (tRNA-dihydrouridine synthase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008033 (tRNA processing), GO:0017150 (tRNA dihydrouridine synthase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01643g00001.1	sp|Q9C698|FPP6_ARATH	***-	Filament-like plant protein 6	IPR008587 (Filament-like plant protein)	
Niben101Scf00369g09028.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf06761g00021.1	emb|CDY05485.1|	***-	BnaA02g32060D [Brassica napus]		
Niben101Scf06404g00024.1	sp|Q9UBQ7|GRHPR_HUMAN	*-*-	Glyoxylate reductase/hydroxypyruvate reductase	IPR016040 (NAD(P)-binding domain)	GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04296g00004.1	ref|NP_001054884.1|	-**-	[Oryza sativa Japonica Group] dbj|BAF16798.1| [Oryza sativa Japonica Group]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf05177g03017.1	emb|CDY67223.1|	***-	BnaCnng53990D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf09631g00003.1	sp|P94072|GL33_ARATH	***-	Germin-like protein subfamily 3 member 3	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf04567g01009.1	sp|Q9M995|GUN5_ARATH	***-	Endoglucanase 5	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like), IPR019028 (Carbohydrate binding domain CBM49)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf05201g01002.1	sp|Q9PWD3|HXA5_MORSA	--*-	Homeobox protein Hox-A5	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf02223g01004.1	sp|Q9LPR6|TET11_ARATH	***-	Tetraspanin-11	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf01322g03022.1	sp|Q41001|BCP_PEA	*-*-	Blue copper protein	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf01812g03005.1	AT2G38910.1	****	calcium-dependent protein kinase 20 LENGTH=583	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13741g04011.1	gb|ACG40676.1|	*-*-	p8MTCP1 [Zea mays]	IPR010625 (CHCH)	
Niben101Scf00032g02010.1			Unknown protein		
Niben101Scf06646g00004.1	AT1G15220.1	***-	cytochrome c biogenesis protein family LENGTH=159	IPR005616 (Cytochrome C biogenesis protein CcmH)	
Niben101Scf04639g12012.1	AT5G02970.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=514	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf11980g00013.1	AT2G01275.1	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=259	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022143 (Protein of unknown function DUF3675)	GO:0008270 (zinc ion binding)
Niben101Scf01062g01019.1	sp|Q9UKC9|FBXL2_HUMAN	--*-	F-box/LRR-repeat protein 2	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf05545g00003.1	sp|Q9ZNS1|RS7_AVIMR	***-	40S ribosomal protein S7	IPR000554 (Ribosomal protein S7e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf22007g00001.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf02172g06028.1	sp|Q9QY93|DCTP1_MOUSE	*-*-	dCTP pyrophosphatase 1	IPR004518 (NTP pyrophosphohydrolase MazG, putative catalytic core)	
Niben101Scf06855g01012.1	AT5G13610.1	*-*-	Protein of unknown function (DUF155) LENGTH=402	IPR003734 (Protein of unknown function DUF155)	
Niben101Scf10287g01002.1	sp|O23310|NFYB3_ARATH	****	Nuclear transcription factor Y subunit B-3	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf05553g00007.1	AT4G08940.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=395	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf03445g01007.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR002902 (Gnk2-homologous domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00953g03009.1	sp|A6MFK9|CRVP_DEMVE	***-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf05552g10027.1	sp|Q04614|NU4LM_ARATH	--*-	NADH-ubiquinone oxidoreductase chain 4L		
Niben101Scf06759g00005.1	sp|Q3IMY5|RL2_NATPD	***-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00317g09003.1	emb|CDX90514.1|	*-*-	BnaA03g42670D [Brassica napus]	IPR019339 (CBF1-interacting co-repressor CIR, N-terminal domain)	
Niben101Scf00905g04003.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY), IPR018872 (Zn-cluster domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01125g03001.1	sp|O64769|POT11_ARATH	*-**	Potassium transporter 11	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf04820g01003.1	AT1G11090.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=324	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02911g03002.1	sp|P34091|RL6_MESCR	*-*-	60S ribosomal protein L6	IPR000915 (60S ribosomal protein L6E), IPR005568 (Ribosomal protein L6, N-terminal), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04077g07010.1	gb|EJT41399.1|	--*-	LRO1-like protein [Saccharomyces kudriavzevii IFO 1802]		
Niben101Scf17760g00008.1	AT5G03730.2	*-*-	Protein kinase superfamily protein LENGTH=821		
Niben101Scf02994g03004.1	ref|WP_008313378.1|	***-	Protein of unknown function (DUF3326) [Leptolyngbya sp. PCC 6406]	IPR021763 (Protein of unknown function DUF3326)	
Niben101Scf04332g00002.1	sp|P28178|PK2_DICDI	****	Protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09253g00011.1	sp|P46510|CAHX_FLABI	***-	Carbonic anhydrase	IPR001765 (Carbonic anhydrase)	GO:0004089 (carbonate dehydratase activity), GO:0008270 (zinc ion binding), GO:0015976 (carbon utilization)
Niben101Scf01396g05008.1	ref|NP_001053188.1|	***-	product [Oryza sativa Japonica Group]	IPR006946 (Protein of unknown function DUF642), IPR008979 (Galactose-binding domain-like)	
Niben101Scf11646g02010.1	AT1G04600.1	*-**	myosin XI A LENGTH=1730	IPR000048 (IQ motif, EF-hand binding site), IPR002710 (Dilute), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf05422g00019.1	sp|Q5F3K0|TTC27_CHICK	--*-	Tetratricopeptide repeat protein 27	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04758g02004.1	AT4G25660.1	***-	PPPDE putative thiol peptidase family protein LENGTH=255	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf09310g01006.1			Unknown protein		
Niben101Scf21557g01020.1	sp|Q9FMV5|NFYC4_ARATH	****	Nuclear transcription factor Y subunit C-4	IPR009072 (Histone-fold), IPR027170 (Transcriptional activator NFYC/HAP5 subunit)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005622 (intracellular), GO:0006355 (regulation of transcription, DNA-templated), GO:0016602 (CCAAT-binding factor complex), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf06596g03013.1	sp|Q99JW2|ACY1_MOUSE	*-*-	Aminoacylase-1	IPR002933 (Peptidase M20)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf03830g01005.1	sp|Q5RJI2|CTL5_MOUSE	*-*-	Choline transporter-like protein 5	IPR007603 (Choline transporter-like)	
Niben101Scf03203g07020.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf11126g08004.1	gb|ADL37213.1|	***-	At1g65450-like protein [Arabidopsis lyrata subsp. lyrata]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01609g00003.1	sp|Q9LUH8|HFA6B_ARATH	****	Heat stress transcription factor A-6b	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00063g07009.1	AT1G18700.4	***-	DNAJ heat shock N-terminal domain-containing protein LENGTH=715		
Niben101Scf02597g04001.1	sp|Q03164|KMT2A_HUMAN	*-**	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR003616 (Post-SET domain), IPR006560 (AWS domain), IPR011124 (Zinc finger, CW-type)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0018024 (histone-lysine N-methyltransferase activity)
Niben101Scf03479g01002.1	sp|Q9XJ54|NTF2_ORYSJ	*-**	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf05135g04002.1	sp|Q76NT9|ACCO1_DICDI	***-	1-aminocyclopropane-1-carboxylate oxidase	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02429g00001.1	sp|Q8L751|ORP1C_ARATH	***-	Oxysterol-binding protein-related protein 1C	IPR000648 (Oxysterol-binding protein), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf06954g03002.1	sp|D8VPP5|AL11A_OLEEU	****	Pectinesterase 1	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf09962g00001.1	sp|Q8GW29|LOG7_ARATH	***-	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf02002g01002.1	sp|Q8LG88|TDT_ARATH	****	Tonoplast dicarboxylate transporter	IPR001898 (Sodium/sulphate symporter)	GO:0005215 (transporter activity), GO:0006814 (sodium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf04217g10008.1	sp|B4S298|TDH_ALTMD	***-	L-threonine 3-dehydrogenase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02098g01011.1	AT5G06370.1	***-	NC domain-containing protein-related LENGTH=259	IPR007053 (LRAT-like domain)	
Niben101Scf03657g07001.1	sp|Q84W80|FBL42_ARATH	*-*-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01375g06006.1	sp|Q0JL44|SGT1_ORYSJ	***-	Protein SGT1 homolog	IPR007699 (SGS), IPR008978 (HSP20-like chaperone), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04675g02001.1	sp|O82804|ELF3_ARATH	***-	Protein EARLY FLOWERING 3		
Niben101Scf07030g07004.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01380g01003.1	AT4G33200.1	*-**	myosin, putative LENGTH=1522	IPR000048 (IQ motif, EF-hand binding site), IPR002710 (Dilute), IPR027401 (Myosin-like IQ motif-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf06091g04004.1	AT4G23100.1	*-*-	glutamate-cysteine ligase LENGTH=522		
Niben101Scf17749g00006.1	emb|CDY19669.1|	--*-	BnaC09g29250D [Brassica napus]		
Niben101Ctg10674g00001.1	sp|Q9SLD4|ZAT11_ARATH	--*-	Zinc finger protein ZAT11		
Niben101Scf02074g07070.1			Unknown protein		
Niben101Scf01273g01018.1	sp|Q53HC5|KLH26_HUMAN	*-*-	Kelch-like protein 26	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Ctg01372g00001.1	sp|Q54BW6|TTC27_DICDI	--*-	Tetratricopeptide repeat protein 27 homolog	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00366g10004.1	AT1G67330.1	***-	Protein of unknown function (DUF579) LENGTH=291	IPR021148 (Putative polysaccharide biosynthesis protein)	
Niben101Scf00854g07037.1	sp|Q0ID08|RL2_SYNS3	--*-	50S ribosomal protein L2		
Niben101Scf00496g02010.1			Unknown protein		
Niben101Scf04676g01010.1	ref|WP_008318310.1|	--*-	N2,N2-dimethylguanosine tRNA methyltransferase [Leptolyngbya sp. PCC 6406]		
Niben101Scf07242g02001.1	AT1G66540.1	***-	Cytochrome P450 superfamily protein LENGTH=386	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02690g01006.1	sp|O81644|VILI2_ARATH	***-	Villin-2	IPR007122 (Villin/Gelsolin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0051015 (actin filament binding), GO:0051017 (actin filament bundle assembly)
Niben101Scf01383g07028.1	sp|Q8LFJ9|GLIP7_ARATH	***-	GDSL esterase/lipase 7	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf07724g00012.1	sp|B5XF11|KDM8_SALSA	***-	Lysine-specific demethylase 8	IPR003347 (JmjC domain)	
Niben101Scf03291g02006.1	sp|Q8LHA8|CCD22_ORYSJ	--*-	Cyclin-D2-2	IPR004147 (UbiB domain)	
Niben101Scf06618g00004.1	sp|Q8S3D2|BH087_ARATH	***-	Transcription factor bHLH87	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf21301g00002.1	ref|NP_001052354.1|	***-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf00113g04012.1	sp|Q9XJ54|NTF2_ORYSJ	*-**	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf11737g00025.1	sp|Q9FRI5|PPR57_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf04196g01002.1	AT1G67080.1	***-	abscisic acid (aba)-deficient 4 LENGTH=220	IPR025461 (Protein of unknown function DUF4281)	
Niben101Scf09698g00005.1	AT3G28210.1	*-**	zinc finger (AN1-like) family protein LENGTH=186	IPR000058 (Zinc finger, AN1-type), IPR015880 (Zinc finger, C2H2-like)	GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf02669g00003.1	sp|Q653H7|ARFR_ORYSJ	****	Auxin response factor 18	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf04899g02023.1	sp|P0C8K4|RPB2_ASFP4	****	DNA-directed RNA polymerase subunit 2	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf00854g11076.1	sp|P13554|PSBE_PEA	*-*-	Cytochrome b559 subunit alpha	IPR006217 (Photosystem II cytochrome b559, alpha subunit)	GO:0009523 (photosystem II), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf00372g03008.1	AT2G26500.2	****	cytochrome b6f complex subunit (petM), putative LENGTH=125	IPR012595 (PetM of cytochrome b6/f complex subunit 7)	GO:0009512 (cytochrome b6f complex)
Niben101Scf03670g04014.1	sp|Q8LGG8|USPAL_ARATH	-***	Universal stress protein A-like protein	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf06080g00003.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf05412g01001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02375g08005.1			Unknown protein		
Niben101Scf15166g00005.1	sp|A7RNG8|CCD22_NEMVE	*-*-	Coiled-coil domain-containing protein 22 homolog	IPR008530 (Protein of unknown function DUF812)	
Niben101Scf12585g00007.1	sp|Q9SIS3|MA656_ARATH	****	65-kDa microtubule-associated protein 6	IPR007145 (Microtubule-associated protein, MAP65/Ase1/PRC1)	GO:0000226 (microtubule cytoskeleton organization), GO:0000910 (cytokinesis), GO:0008017 (microtubule binding)
Niben101Scf11617g00001.1	ref|XP_007033845.1|	*-*-	DNA double-strand break repair rad50 ATPase, putative isoform 2 [Theobroma cacao] gb|EOY04771.1| DNA double-strand break repair rad50 ATPase, putative isoform 2 [Theobroma cacao]		
Niben101Scf07049g01002.1	sp|Q9BX46|RBM24_HUMAN	*-**	RNA-binding protein 24	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00934g02001.1	sp|Q38ZF1|UXAC_LACSS	--*-	Uronate isomerase		
Niben101Scf03392g02011.1	AT2G41500.1	*-*-	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related LENGTH=554	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf04875g03009.1			Unknown protein		
Niben101Scf08357g03008.1	sp|Q9LXF4|PP384_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02853g03003.1	sp|Q7TXK3|PHMT_MYCBO	--**	Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf08274g01003.1	sp|Q1E2D2|SSH4_COCIM	*-*-	Protein SSH4	IPR003877 (SPRY domain)	GO:0005515 (protein binding)
Niben101Scf00528g01004.1	AT5G60900.1	*-**	receptor-like protein kinase 1 LENGTH=748	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00851g00022.1	sp|Q652P9|GL93_ORYSJ	*-*-	Germin-like protein 9-3	IPR001810 (F-box domain), IPR001929 (Germin)	GO:0005515 (protein binding), GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf13571g04002.1	AT1G67600.1	***-	Acid phosphatase/vanadium-dependent haloperoxidase-related protein LENGTH=163	IPR003832 (Acid phosphatase/vanadium-dependent haloperoxidase-related)	
Niben101Scf34675g00006.1	AT2G14830.1	*-*-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=454	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf08249g02003.1	sp|B2GBQ6|DNAJ_LACF3	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Ctg06624g00001.1	sp|Q8LG89|BABL_ARATH	***-	Basic blue protein	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf00436g04003.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf11767g02017.1	sp|Q7XT39|EXPB5_ORYSJ	*-*-	Expansin-B5	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf05413g01015.1	sp|A2BMB2|RL2_HYPBU	***-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03781g00004.1	sp|P10243|MYBA_HUMAN	*-*-	Myb-related protein A	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07346g04002.1	AT4G19420.1	***-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf04205g02003.1	sp|Q9NZC3|GDE1_HUMAN	--**	Glycerophosphodiester phosphodiesterase 1	IPR004129 (Glycerophosphoryl diester phosphodiesterase)	GO:0006071 (glycerol metabolic process), GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity), GO:0008889 (glycerophosphodiester phosphodiesterase activity)
Niben101Scf06387g02046.1	ref|YP_006291826.1|	***-	orf42 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81180.1| orf42 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf00895g00009.1	sp|Q3AZA6|RS20_SYNS9	--*-	30S ribosomal protein S20	IPR002583 (Ribosomal protein S20)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf11702g00020.1	AT1G13530.1	***-	Protein of unknown function (DUF1262) LENGTH=385	IPR010683 (Protein of unknown function DUF1262)	
Niben101Scf05368g02018.1	sp|Q6MDI5|FTSH_PARUW	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR005936 (Peptidase, FtsH), IPR011546 (Peptidase M41, FtsH extracellular), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf00941g03004.1	AT5G07900.1	****	Mitochondrial transcription termination factor family protein LENGTH=405	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07172g01001.1			Unknown protein		
Niben101Scf06080g04001.1	sp|C1DFM2|DNAJ_AZOVD	***-	Chaperone protein DnaJ	IPR012724 (Chaperone DnaJ)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0009408 (response to heat), GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf00495g00006.1	emb|CDX99035.1|	***-	BnaC09g48000D [Brassica napus]		
Niben101Scf22195g00023.1	tpg|DAA50858.1|	*-*-	TPA: hypothetical protein ZEAMMB73_471178 [Zea mays]		
Niben101Scf21408g00019.1	sp|A2Y4S9|CYC_ORYSI	***-	Cytochrome c	IPR002327 (Cytochrome c, class IA/ IB), IPR009056 (Cytochrome c-like domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf11706g00024.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00033g00010.1			Unknown protein		
Niben101Scf01822g09001.1	AT2G35500.1	*-*-	shikimate kinase like 2 LENGTH=387	IPR000623 (Shikimate kinase/Threonine synthase-like 1), IPR008978 (HSP20-like chaperone), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01930g00014.1	sp|Q75L42|CIPKH_ORYSJ	*-**	CBL-interacting protein kinase 17	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf14274g01005.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain), IPR006141 (Intein splice site)	GO:0005515 (protein binding), GO:0016539 (intein-mediated protein splicing)
Niben101Scf08762g00027.1	sp|Q25378|KPC1_LYTPI	*-**	Protein kinase C	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03643g02033.1	sp|P27754|RT03_OENBE	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf08782g04001.1			Unknown protein		
Niben101Scf06628g01002.1	AT1G02910.1	***-	tetratricopeptide repeat (TPR)-containing protein LENGTH=453	IPR011990 (Tetratricopeptide-like helical domain), IPR021883 (Protein of unknown function DUF3493)	GO:0005515 (protein binding)
Niben101Scf02830g02027.1			Unknown protein		
Niben101Scf01515g03004.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04793g02007.1			Unknown protein		
Niben101Scf04753g01003.1	sp|O81416|GUN17_ARATH	***-	Endoglucanase 17	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00090g11004.1	sp|Q9ZVX5|PP156_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf09172g02014.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf15515g01010.1	AT1G63340.1	****	Flavin-containing monooxygenase family protein LENGTH=424	IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00355g02001.1	dbj|BAA21495.1|	-**-	metallocarboxypeptidase inhibitor [Solanum tuberosum]		
Niben101Scf02437g00009.1	AT3G22200.2	*-**	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein LENGTH=513	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf06903g00005.1	gb|AFO69204.1|	****	ATPase subunit 8 (mitochondrion) [Gossypium hirsutum]	IPR009455 (ATP synthase YMF19, uncharacterised, C-terminal)	GO:0005739 (mitochondrion), GO:0016021 (integral component of membrane), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances)
Niben101Scf04794g01016.1	AT4G34810.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=105	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02188g00011.1	gb|KEH21973.1|	***-	WRKY transcription factor-like protein [Medicago truncatula]		
Niben101Scf01294g05002.1	sp|Q9HCM9|TRI39_HUMAN	--*-	E3 ubiquitin-protein ligase TRIM39	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Ctg16253g00002.1	gb|ADB03785.1|	***-	deleted in split hand/splt foot protein 1 [Ipomoea batatas]	IPR007834 (DSS1/SEM1)	
Niben101Scf09590g00008.1	AT4G04320.1	****	malonyl-CoA decarboxylase family protein LENGTH=518	IPR007956 (Malonyl-CoA decarboxylase)	GO:0006633 (fatty acid biosynthetic process), GO:0050080 (malonyl-CoA decarboxylase activity)
Niben101Scf06758g00003.1	ref|XP_002535501.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF26883.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04198g01001.1	sp|P51375|GLTB_PORPU	****	Ferredoxin-dependent glutamate synthase	IPR013785 (Aldolase-type TIM barrel), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0003824 (catalytic activity), GO:0006537 (glutamate biosynthetic process), GO:0006807 (nitrogen compound metabolic process), GO:0008152 (metabolic process), GO:0015930 (glutamate synthase activity), GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors), GO:0055114 (oxidation-reduction process)
Niben101Scf34287g00008.1	sp|Q0IQU1|LAC22_ORYSJ	***-	Laccase-22	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10189g01008.1	sp|O24592|NCED1_MAIZE	*-*-	9-cis-epoxycarotenoid dioxygenase 1, chloroplastic	IPR004294 (Carotenoid oxygenase)	
Niben101Scf02502g07010.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf15203g00005.1	sp|Q6NPT8|PP2B1_ARATH	*-*-	F-box protein PP2-B1		
Niben101Scf06365g00006.1	sp|P0CAX9|DEF21_ARATH	*-*-	Defensin-like protein 21		
Niben101Scf15435g00009.1	sp|Q04127|PSBP3_TOBAC	-***	Oxygen-evolving enhancer protein 2-3, chloroplastic	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf10385g00019.1	sp|P46417|GSTX3_SOYBN	*-*-	Glutathione S-transferase 3	IPR010987 (Glutathione S-transferase, C-terminal-like)	
Niben101Scf03985g02027.1	ref|XP_002513591.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF48994.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf18356g00003.1	sp|P49043|VPE_CITSI	***-	Vacuolar-processing enzyme	IPR001096 (Peptidase C13, legumain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00228g05005.1	emb|CEE01023.1|	***-	histidine triad (HIT) protein [Bacillus thermoamylovorans]	IPR001310 (Histidine triad (HIT) protein), IPR011146 (HIT-like domain)	GO:0003824 (catalytic activity)
Niben101Scf04697g02003.1			Unknown protein		
Niben101Scf03121g00006.1	sp|Q9SYF0|GLIP2_ARATH	***-	GDSL esterase/lipase 2	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04396g02009.1	AT5G10270.1	****	cyclin-dependent kinase C;1 LENGTH=505	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08478g00017.1	sp|Q8N8Q9|NIPA2_HUMAN	****	Magnesium transporter NIPA2	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf08755g02023.1	AT1G69690.1	*-*-	TCP family transcription factor LENGTH=325	IPR005333 (Transcription factor, TCP)	
Niben101Scf00801g00002.1	gb|KEH25610.1|	*-**	transmembrane amino acid transporter family protein [Medicago truncatula]	IPR018227 (Tryptophan/tyrosine permease)	GO:0003333 (amino acid transmembrane transport)
Niben101Scf03106g02020.1	sp|O04539|SNL4_ARATH	*-*-	Paired amphipathic helix protein Sin3-like 4		
Niben101Scf02929g01010.1	sp|Q06GT2|RK2_DRIGR	*-*-	50S ribosomal protein L2, chloroplastic		
Niben101Scf06486g00002.1	sp|Q38897|BEL1_ARATH	*-*-	Homeobox protein BEL1 homolog	IPR006563 (POX domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02112g00007.1	sp|P81834|TL16_SPIOL	--*-	Thylakoid lumenal 13.3 kDa protein		
Niben101Scf00444g00008.1	sp|Q84T94|P2C35_ORYSJ	*-*-	Protein phosphatase 2C 35	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf00189g05003.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00870g12003.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06111g00001.1	AT1G01710.1	****	Acyl-CoA thioesterase family protein LENGTH=427	IPR003703 (Acyl-CoA thioesterase), IPR014710 (RmlC-like jelly roll fold), IPR029069 (HotDog domain)	GO:0006637 (acyl-CoA metabolic process), GO:0047617 (acyl-CoA hydrolase activity)
Niben101Scf00290g01009.1	AT5G19420.2	*-*-	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain LENGTH=1139	IPR013591 (Brevis radix (BRX) domain)	
Niben101Scf04485g02016.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01526g09006.1	sp|Q9EQE1|SENP2_RAT	--*-	Sentrin-specific protease 2	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf04563g01017.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf02541g08002.1	sp|Q6IP09|PABPB_XENLA	*-**	Polyadenylate-binding protein 1-B	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02195g02001.1	emb|CDX89594.1|	*-*-	BnaC04g36130D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf18902g00017.1	sp|Q8RXD6|BRE1A_ARATH	***-	E3 ubiquitin-protein ligase BRE1-like 1		
Niben101Scf00484g02008.1	sp|Q8VYD6|PP374_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR027902 (Protein of unknown function DUF4487)	
Niben101Scf03941g02007.1	sp|Q54M21|DNJC3_DICDI	--*-	DnaJ homolog subfamily C member 3 homolog		
Niben101Scf02909g04002.1	gb|KGK43412.1|	*-*-	OHCU decarboxylase [Nitrincola sp. A-D6]	IPR018020 (Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase), IPR023416 (Transthyretin/hydroxyisourate hydrolase, superfamily), IPR023418 (Transthyretin, thyroxine binding site)	
Niben101Scf02483g00007.1	sp|Q5I0E7|TMED9_RAT	*-*-	Transmembrane emp24 domain-containing protein 9	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf02819g00002.1	emb|CDY30110.1|	--*-	BnaC05g37520D [Brassica napus]		
Niben101Scf04071g05007.1	sp|Q5Z9Z0|BGL24_ORYSJ	***-	Beta-glucosidase 24	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09812g01019.1	sp|Q8BWM0|PGES2_MOUSE	*-*-	Prostaglandin E synthase 2	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf05431g00003.1	sp|O48651|ERG1_PANGI	****	Squalene monooxygenase	IPR003042 (Aromatic-ring hydroxylase-like), IPR006076 (FAD dependent oxidoreductase)	GO:0004506 (squalene monooxygenase activity), GO:0008152 (metabolic process), GO:0016021 (integral component of membrane), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11688g00011.1	sp|Q7XUR2|LDL3_ORYSJ	*-*-	Lysine-specific histone demethylase 1 homolog 3	IPR002937 (Amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07841g02007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR002902 (Gnk2-homologous domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04632g10007.1	sp|Q3T0Z8|RUXF_BOVIN	***-	Small nuclear ribonucleoprotein F	IPR010920 (Like-Sm (LSM) domain), IPR016487 (Small nuclear ribonucleoprotein SmF)	GO:0005634 (nucleus), GO:0006396 (RNA processing)
Niben101Scf04096g02015.1	sp|Q67NK1|MUTS_SYMTH	****	DNA mismatch repair protein MutS	IPR000432 (DNA mismatch repair protein MutS, C-terminal), IPR007695 (DNA mismatch repair protein MutS-like, N-terminal), IPR007696 (DNA mismatch repair protein MutS, core), IPR007860 (DNA mismatch repair protein MutS, connector domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf07275g02001.1	sp|Q6X7K1|WOX2_ARATH	*-*-	WUSCHEL-related homeobox 2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf16022g00012.1	sp|Q9LN94|EXPA7_ARATH	***-	Expansin-A7	IPR007117 (Expansin, cellulose-binding-like domain), IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf05566g02019.1	sp|Q39214|RPM1_ARATH	--*-	Disease resistance protein RPM1		
Niben101Scf02250g01008.1	sp|Q9WUU9|GANP_MOUSE	*-*-	Germinal-center associated nuclear protein	IPR005062 (SAC3/GANP/Nin1/mts3/eIF-3 p25)	
Niben101Scf03325g00011.1	sp|O80434|LAC4_ARATH	***-	Laccase-4	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03026g09004.1	emb|CDY23383.1|	***-	BnaC04g49110D [Brassica napus]		
Niben101Scf06987g00001.1	sp|P27898|MYBP_MAIZE	*-*-	Myb-related protein P	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05468g02018.1	sp|Q6RHR6|DMI1_MEDTR	*-*-	Ion channel DMI1	IPR010420 (CASTOR/POLLUX/SYM8 ion channels)	
Niben101Scf05890g02008.1	ref|NP_001046162.1|	--*-	product [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf06153g02009.1	sp|O23140|AP2M_ARATH	****	AP-2 complex subunit mu	IPR001392 (Clathrin adaptor, mu subunit), IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf04118g02002.1	ref|WP_025925378.1|	***-	MULTISPECIES: hypothetical protein [Prochlorococcus]	IPR003832 (Acid phosphatase/vanadium-dependent haloperoxidase-related)	
Niben101Scf02920g00014.1	gb|ABF97305.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf06926g05006.1	AT4G01810.1	*-*-	Sec23/Sec24 protein transport family protein LENGTH=880	IPR002035 (von Willebrand factor, type A)	
Niben101Scf06091g07001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04828g00004.1	sp|Q38820|TI232_ARATH	***-	Mitochondrial import inner membrane translocase subunit TIM23-2	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Scf09409g02016.1	sp|Q9LZQ1|TBL6_ARATH	*-*-	Protein trichome birefringence-like 6	IPR018710 (Protein of unknown function DUF2232)	
Niben101Scf01017g01003.1	sp|O23659|Y2372_ARATH	--*-	B3 domain-containing protein		
Niben101Scf02074g05013.1			Unknown protein		
Niben101Scf01970g01015.1	sp|Q0VBY0|CMC4_BOVIN	***-	Cx9C motif-containing protein 4	IPR009069 (Cysteine alpha-hairpin motif superfamily)	
Niben101Scf02014g00033.1	sp|F4JJL0|ENDO4_ARATH	****	Endonuclease 4	IPR003154 (S1/P1 nuclease), IPR008947 (Phospholipase C/P1 nuclease domain)	GO:0003676 (nucleic acid binding), GO:0004519 (endonuclease activity), GO:0006308 (DNA catabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00730g00005.1	sp|O15891|TCPA_TETPY	--*-	T-complex protein 1 subunit alpha	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process)
Niben101Scf03427g10011.1			Unknown protein		
Niben101Scf02280g04002.1	emb|CDY07628.1|	*-*-	BnaA03g18830D [Brassica napus]		
Niben101Scf04377g03007.1	AT3G14370.1	****	Protein kinase superfamily protein LENGTH=480	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02831g07014.1	ref|XP_007014955.1|	***-	Far1-related sequence 4 isoform 3 [Theobroma cacao] gb|EOY32574.1| Far1-related sequence 4 isoform 3 [Theobroma cacao]	IPR007527 (Zinc finger, SWIM-type), IPR018289 (MULE transposase domain)	GO:0008270 (zinc ion binding)
Niben101Scf07498g01010.1	gb|KEH35238.1|	*-*-	rhodanese/cell cycle control phosphatase superfamily protein [Medicago truncatula]		
Niben101Scf05434g03013.1	AT5G19760.1	***-	Mitochondrial substrate carrier family protein LENGTH=298	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf03400g02010.1	sp|Q9LUE0|TPS19_ARATH	****	Terpenoid synthase 19	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf05389g00004.1	sp|P41755|DHE2_ACHKL	*-*-	NAD-specific glutamate dehydrogenase	IPR019651 (Glutamate dehydrogenase, NAD-specific)	
Niben101Scf01235g00003.1	sp|Q43804|OLEO1_PRUDU	***-	Oleosin 1	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf01487g04021.1	sp|Q8VYE4|PTR12_ARATH	***-	Protein NRT1/ PTR FAMILY 4.5	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf06205g01005.1	ref|NP_180763.1|	****	Acyl-CoA N-acyltransferases (NAT) superfamily protein [Arabidopsis thaliana] putative alanine acetyl transferase [Arabidopsis thaliana] gb|AAD15401.1| putative alanine acetyl transferase [Arabidopsis thaliana] gb|ABD60717.1| [Arabidopsis thaliana] gb|AEC08624.1| GCN5-related N-acetyltransferase-like protein [Arabidopsis thaliana]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Ctg16458g00002.1			Unknown protein		
Niben101Scf08226g00003.1	sp|Q7XSK0|BGL18_ORYSJ	*-*-	Beta-glucosidase 18	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09030g01003.1	sp|O81004|Y2287_ARATH	****	GTP-binding protein	IPR006073 (GTP binding domain), IPR019987 (GTP-binding protein, ribosome biogenesis, YsxC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000917 (barrier septum assembly), GO:0005525 (GTP binding)
Niben101Scf09427g01009.1	AT2G32850.2	*-**	Protein kinase superfamily protein LENGTH=670	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05094g00005.1	AT5G05950.1	***-	maternal effect embryo arrest 60 LENGTH=175		
Niben101Scf00212g02005.1	AT3G14900.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 17135 Blast hits to 10204 proteins in 644 species: Archae - 47; Bacteria - 1684; Metazoa - 5536; Fungi - 2506; Plants - 1043; Viruses - 361; Other Eukaryotes - 5958 (source: NCBI BLink). LENGTH=611		
Niben101Scf00485g01008.1	sp|Q9FGR0|CPSF1_ARATH	***-	Cleavage and polyadenylation specificity factor subunit 1	IPR004871 (Cleavage/polyadenylation specificity factor, A subunit, C-terminal)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Scf06499g01022.1	sp|P39098|MA1A2_MOUSE	*-**	Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB	IPR001382 (Glycoside hydrolase, family 47)	GO:0004571 (mannosyl-oligosaccharide 1,2-alpha-mannosidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane)
Niben101Scf05804g03005.1	sp|P41099|RLA2_PARAR	*-*-	60S acidic ribosomal protein P2	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf07168g00003.1	sp|P44933|KEFX_HAEIN	*-**	Glutathione-regulated potassium-efflux system protein	IPR006153 (Cation/H+ exchanger), IPR016040 (NAD(P)-binding domain)	GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0008324 (cation transmembrane transporter activity), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02268g06007.1	AT5G64220.1	****	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains LENGTH=1050	IPR000048 (IQ motif, EF-hand binding site), IPR005559 (CG-1 DNA-binding domain), IPR013783 (Immunoglobulin-like fold), IPR014756 (Immunoglobulin E-set), IPR020683 (Ankyrin repeat-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf01917g06008.1	sp|P26300|ENO_SOLLC	*-*-	Enolase	IPR029065 (Enolase C-terminal domain-like)	GO:0000015 (phosphopyruvate hydratase complex), GO:0000287 (magnesium ion binding), GO:0004634 (phosphopyruvate hydratase activity), GO:0006096 (glycolytic process)
Niben101Scf03373g04010.1	emb|CDY54297.1|	--*-	BnaC01g41960D [Brassica napus]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf07591g00005.1	ref|XP_002526994.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35366.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09101g02004.1			Unknown protein		
Niben101Scf01856g00011.1	sp|F4K4R6|GEX2_ARATH	***-	Protein GAMETE EXPRESSED 2	IPR003344 (Bacterial Ig-like, group 1), IPR013783 (Immunoglobulin-like fold), IPR014756 (Immunoglobulin E-set)	
Niben101Scf10314g01002.1	AT1G09160.2	*-*-	Protein phosphatase 2C family protein LENGTH=428	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf03202g02008.1	sp|Q62GE0|HIS81_BURMA	*-**	Histidinol-phosphate aminotransferase 1	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02548g06010.1	sp|P0CI48|KA127_LYCMC	-**-	Neurotoxin alpha-KTx 12.7		
Niben101Scf05669g02023.1	sp|Q9LYZ9|PP362_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03113g01013.1	sp|P41099|RLA2_PARAR	--*-	60S acidic ribosomal protein P2		
Niben101Scf10902g01006.1	ref|XP_007030936.1|	***-	Mog1/PsbP/DUF1795-like phot isoform 1 [Theobroma cacao]	IPR016123 (Mog1/PsbP, alpha/beta/alpha sandwich)	
Niben101Scf11865g01006.1	sp|Q9T0K7|HIBC6_ARATH	***-	3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial	IPR029045 (ClpP/crotonase-like domain)	
Niben101Scf03944g02015.1	gb|KFB86097.1|	*-*-	dihydrolipoamide dehydrogenase [Calothrix sp. 336/3]	IPR016156 (FAD/NAD-linked reductase, dimerisation domain)	GO:0016491 (oxidoreductase activity), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf17983g00001.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf05188g03013.1	sp|Q8YRL4|ISPT2_NOSS1	****	Isoprenyl transferase 2	IPR001441 (Decaprenyl diphosphate synthase-like)	GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf07303g01004.1	sp|O23320|CML8_ARATH	-**-	Calmodulin-like protein 8	IPR011992 (EF-hand domain pair)	
Niben101Scf04060g02011.1	sp|Q43872|PER64_ARATH	*-**	Peroxidase 64	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf22144g00003.1	gb|ABN08700.1|	--*-	Endonuclease/exonuclease/phosphatase [Medicago truncatula]		
Niben101Scf01795g19019.1	sp|Q9FMJ0|P4KB1_ARATH	****	Phosphatidylinositol 4-kinase beta 1	IPR015433 (Phosphatidylinositol Kinase), IPR016024 (Armadillo-type fold)	GO:0004430 (1-phosphatidylinositol 4-kinase activity), GO:0005488 (binding), GO:0006661 (phosphatidylinositol biosynthetic process), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor), GO:0046854 (phosphatidylinositol phosphorylation), GO:0048015 (phosphatidylinositol-mediated signaling)
Niben101Scf00625g02001.1	AT5G19830.1	****	Peptidyl-tRNA hydrolase family protein LENGTH=219	IPR001328 (Peptidyl-tRNA hydrolase)	GO:0004045 (aminoacyl-tRNA hydrolase activity)
Niben101Scf00626g01002.1	sp|Q9M352|RL362_ARATH	***-	60S ribosomal protein L36-2	IPR000509 (Ribosomal protein L36e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00963g01005.1	ref|WP_008316364.1|	--*-	beta-propeller domain-containing protein, methanol dehydrogenase [Leptolyngbya sp. PCC 6406]	IPR007621 (TPM domain)	
Niben101Scf06076g00011.1	sp|Q10CQ1|MAD14_ORYSJ	****	MADS-box transcription factor 14	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf04632g02001.1	ref|NP_001065777.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf01623g18005.1	sp|Q86VZ2|WDR5B_HUMAN	*-*-	WD repeat-containing protein 5B	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf08975g00005.1	sp|Q6AZD4|IMP2L_DANRE	****	Mitochondrial inner membrane protease subunit 2	IPR000223 (Peptidase S26A, signal peptidase I), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane)
Niben101Scf07945g01002.1	sp|P84227|H32_BOVIN	***-	Histone H3.2	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf11751g01010.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02115g04004.1	AT5G10770.1	***-	Eukaryotic aspartyl protease family protein LENGTH=474	IPR001461 (Aspartic peptidase), IPR008543 (Uncharacterised protein family Ycf2), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0009507 (chloroplast)
Niben101Scf05206g03002.1	ref|WP_013377375.1|	--*-	penicillin-binding protein 1A [Stigmatella aurantiaca] ref|YP_003956160.1| penicillin-binding protein, 1a family [Stigmatella aurantiaca DW4/3-1] gb|ADO74333.1| Penicillin-binding protein, 1A family [Stigmatella aurantiaca DW4/3-1]		
Niben101Scf02182g11003.1			Unknown protein		
Niben101Scf09597g01002.1	sp|P42813|RNS1_ARATH	****	Ribonuclease 1	IPR001568 (Ribonuclease T2-like)	GO:0003723 (RNA binding), GO:0033897 (ribonuclease T2 activity)
Niben101Scf15792g00018.1	sp|Q5BCC6|BGLC_EMENI	*-*-	Beta-glucosidase C	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Ctg13092g00001.1	emb|CAC83580.1|	--*-	major latex-like protein [Arabidopsis thaliana]	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf01702g07001.1	sp|Q56XU4|C3H6_ARATH	***-	Zinc finger CCCH domain-containing protein 6	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf01664g01001.1	AT3G51280.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=430	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00202g04008.1			Unknown protein		
Niben101Scf01942g05040.1			Unknown protein		
Niben101Scf07643g00008.1	sp|Q9FME0|RFA1D_ARATH	--*-	Replication protein A 70 kDa DNA-binding subunit D	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf07564g01016.1	sp|Q67ZU1|LIP2_ARATH	***-	Triacylglycerol lipase 2	IPR006693 (Partial AB-hydrolase lipase domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf07091g01016.1	sp|P93231|VPS41_SOLLC	***-	Vacuolar protein sorting-associated protein 41 homolog	IPR000547 (Clathrin, heavy chain/VPS, 7-fold repeat), IPR011990 (Tetratricopeptide-like helical domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport)
Niben101Scf05963g00026.1	sp|Q9H0Z9|RBM38_HUMAN	*-**	RNA-binding protein 38	IPR001878 (Zinc finger, CCHC-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf27451g00002.1	AT5G52390.1	***-	PAR1 protein LENGTH=195	IPR009489 (PAR1)	
Niben101Scf04233g01017.1	sp|A2Z1W9|ACCO1_ORYSI	***-	1-aminocyclopropane-1-carboxylate oxidase 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf14115g01009.1	sp|Q84W80|FBL42_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain), IPR006566 (FBD domain)	GO:0005515 (protein binding)
Niben101Scf06770g00004.1	sp|Q9GBG9|CYB_MUSAL	*-*-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity)
Niben101Scf02877g06002.1	ref|NP_001045452.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf05269g02001.1	gb|KEH34932.1|	****	microsomal signal peptidase 12 kDa protein [Medicago truncatula]	IPR009542 (Microsomal signal peptidase 12kDa subunit)	GO:0005787 (signal peptidase complex), GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf01502g02024.1	sp|Q8VXX4|RFC3_ARATH	*-*-	Replication factor C subunit 3	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf03969g02008.1			Unknown protein		
Niben101Scf00220g05001.1	sp|A1CJ34|CHL1_ASPCL	****	ATP-dependent RNA helicase chl1	IPR006555 (ATP-dependent helicase, C-terminal), IPR013020 (DNA helicase (DNA repair), Rad3 type), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0004003 (ATP-dependent DNA helicase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008026 (ATP-dependent helicase activity), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf09467g01002.1	AT5G64030.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=829	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02268g06005.1	AT5G10270.1	****	cyclin-dependent kinase C;1 LENGTH=505	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03142g02005.1	AT4G29060.1	*-**	elongation factor Ts family protein LENGTH=953	IPR001816 (Translation elongation factor EFTs/EF1B), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding), GO:0003746 (translation elongation factor activity), GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006414 (translational elongation)
Niben101Scf05029g02007.1	sp|P0C1E6|OBG_CORGL	*-**	GTPase Obg	IPR014100 (GTP-binding protein Obg/CgtA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000287 (magnesium ion binding), GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf27265g00030.1	AT1G13130.1	***-	Cellulase (glycosyl hydrolase family 5) protein LENGTH=552	IPR000772 (Ricin B lectin domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0005975 (carbohydrate metabolic process)
Niben101Scf00246g04005.1	sp|Q2KBR2|DXS_RHIEC	****	1-deoxy-D-xylulose-5-phosphate synthase	IPR005477 (Deoxyxylulose-5-phosphate synthase), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0008661 (1-deoxy-D-xylulose-5-phosphate synthase activity), GO:0016114 (terpenoid biosynthetic process)
Niben101Scf03491g00003.1			Unknown protein		
Niben101Scf00262g03010.1	sp|P46269|QCR8_SOLTU	****	Cytochrome b-c1 complex subunit 8	IPR004205 (Cytochrome b-c1 complex subunit 8)	GO:0005743 (mitochondrial inner membrane), GO:0008121 (ubiquinol-cytochrome-c reductase activity), GO:0022900 (electron transport chain), GO:0070469 (respiratory chain)
Niben101Scf10543g00003.1	sp|Q9LJI2|CCX3_ARATH	***-	Cation/calcium exchanger 3	IPR004837 (Sodium/calcium exchanger membrane region)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf14939g01008.1	sp|P49730|RIR2_TOBAC	****	Ribonucleoside-diphosphate reductase small chain	IPR000358 (Ribonucleotide reductase small subunit), IPR009078 (Ferritin-like superfamily)	GO:0009186 (deoxyribonucleoside diphosphate metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09189g00007.1	sp|P56695|WFS1_MOUSE	--*-	Wolframin		
Niben101Scf00671g00009.1	AT2G17220.1	****	Protein kinase superfamily protein LENGTH=414	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05281g00001.1	sp|Q5ZHM5|RER1_CHICK	*-*-	Protein RER1	IPR004932 (Retrieval of early ER protein Rer1), IPR005606 (Sec20)	GO:0016021 (integral component of membrane)
Niben101Scf02297g02011.1	AT1G53025.1	*-*-	Ubiquitin-conjugating enzyme family protein LENGTH=543	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf00352g02004.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04558g02055.1	ref|XP_003593730.1|	--*-	THO complex subunit-like protein [Medicago truncatula]		
Niben101Scf04156g00008.1	ref|XP_007039097.1|	-**-	Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase, putative [Theobroma cacao] gb|EOY23598.1| Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase, putative [Theobroma cacao]		
Niben101Scf06172g03008.1	gb|ABL63116.1|	*-**	DNA-binding protein, partial [Catharanthus roseus]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf04500g02003.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00837g04002.1	AT2G46760.1	****	D-arabinono-1,4-lactone oxidase family protein LENGTH=603	IPR007173 (D-arabinono-1,4-lactone oxidase), IPR010030 (Plant-specific FAD-dependent oxidoreductase)	GO:0003885 (D-arabinono-1,4-lactone oxidase activity), GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Ctg15646g00004.1	sp|Q94AY3|DRIP2_ARATH	***-	E3 ubiquitin protein ligase DRIP2	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06646g00005.1	ref|XP_007040229.1|	*-*-	Rpr2/Rpp21 subunit-like protein [Theobroma cacao] gb|EOY24730.1| Rpr2/Rpp21 subunit-like protein [Theobroma cacao]		
Niben101Scf07614g02001.1	AT4G35070.1	***-	SBP (S-ribonuclease binding protein) family protein LENGTH=265		
Niben101Scf06462g01002.1	AT3G43540.1	***-	Protein of unknown function (DUF1350) LENGTH=373	IPR010765 (Protein of unknown function DUF1350), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03702g04003.1	sp|Q96RV3|PCX1_HUMAN	--*-	Pecanex-like protein 1		
Niben101Scf02816g08006.1	emb|CDY28852.1|	--*-	BnaC06g26400D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00472g02011.1	sp|Q9C6V3|AGL86_ARATH	--*-	Agamous-like MADS-box protein AGL86	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf07019g02012.1	sp|Q9LVQ5|PP432_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08918g00010.1	sp|Q9LZP9|CP122_ARATH	***-	Calvin cycle protein CP12-2, chloroplastic	IPR003823 (Domain of unknown function CP12)	
Niben101Scf06958g02004.1	sp|Q9SR36|GSTU8_ARATH	--*-	Glutathione S-transferase U8	IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf16636g00006.1	emb|CDY20740.1|	*-*-	BnaA02g08800D [Brassica napus]		
Niben101Scf00715g05001.1	gb|ABA96825.1|	*-*-	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf03946g00014.1	gb|KEH32210.1|	*-*-	endo-1,3-1,4-beta-D-glucanase-like protein [Medicago truncatula]		
Niben101Scf03497g04007.1	sp|Q68S26|PSBA_PANGI	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf38084g00011.1	sp|Q9NTZ6|RBM12_HUMAN	*-**	RNA-binding protein 12	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Ctg09430g00001.1	sp|Q9NV70|EXOC1_HUMAN	--*-	Exocyst complex component 1	IPR019160 (Exocyst complex, component 1/SEC3)	
Niben101Scf11688g00013.1	gb|ACG33828.1|	-**-	coatomer subunit zeta-1 [Zea mays]	IPR011012 (Longin-like domain)	GO:0006810 (transport)
Niben101Scf00318g12003.1	sp|O24160|TGA21_TOBAC	*-**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07327g01022.1	AT2G46060.1	***-	transmembrane protein-related LENGTH=807	IPR000742 (Epidermal growth factor-like domain), IPR021910 (Protein of unknown function DUF3522)	GO:0005515 (protein binding)
Niben101Scf09860g00001.1	emb|CDX70878.1|	--*-	BnaC03g09620D [Brassica napus]		
Niben101Scf38001g00007.1	emb|CDY49793.1|	*-*-	BnaCnng18060D [Brassica napus]		
Niben101Scf01842g00003.1	sp|Q8S340|PPA22_ARATH	*-**	Purple acid phosphatase 22	IPR008963 (Purple acid phosphatase-like, N-terminal)	GO:0003993 (acid phosphatase activity), GO:0046872 (metal ion binding)
Niben101Scf06665g01024.1	sp|Q9SMC4|DAD1_SOLLC	****	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1	IPR003038 (DAD/Ost2)	GO:0004579 (dolichyl-diphosphooligosaccharide-protein glycotransferase activity), GO:0008250 (oligosaccharyltransferase complex), GO:0016021 (integral component of membrane)
Niben101Scf01063g07014.1	sp|P49076|ARF_MAIZE	***-	ADP-ribosylation factor	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf08753g02038.1	sp|Q54GX5|PEX1_DICDI	*-**	Peroxisome biogenesis factor 1	IPR003959 (ATPase, AAA-type, core), IPR009010 (Aspartate decarboxylase-like domain), IPR025653 (Peroxisome biogenesis factor 1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029067 (CDC48 domain 2-like)	GO:0005524 (ATP binding), GO:0005777 (peroxisome), GO:0005778 (peroxisomal membrane), GO:0006625 (protein targeting to peroxisome), GO:0007031 (peroxisome organization), GO:0042623 (ATPase activity, coupled)
Niben101Scf04287g02002.1	sp|Q2EMV9|PAR14_MOUSE	*-*-	Poly [ADP-ribose] polymerase 14	IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR022003 (RST domain of plant C-terminal)	GO:0003950 (NAD+ ADP-ribosyltransferase activity)
Niben101Scf00304g02014.1	sp|O24606|EIN3_ARATH	*-*-	Protein ETHYLENE INSENSITIVE 3		
Niben101Scf05929g00003.1	sp|O50055|COL1_ARATH	*-*-	Zinc finger protein CONSTANS-LIKE 1	IPR010402 (CCT domain)	GO:0005515 (protein binding)
Niben101Scf30938g00003.1	sp|P09003|MI25_TOBAC	*-**	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf00735g01001.1			Unknown protein		
Niben101Scf02749g05043.1	emb|CDY25682.1|	***-	BnaC03g69930D [Brassica napus]	IPR007650 (Zf-FLZ domain)	
Niben101Scf00991g10002.1	AT2G23060.1	***-	Acyl-CoA N-acyltransferases (NAT) superfamily protein LENGTH=413	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf01005g05017.1	sp|Q60037|XYNA_THEMA	*-*-	Endo-1,4-beta-xylanase A	IPR001000 (Glycoside hydrolase, family 10), IPR008979 (Galactose-binding domain-like), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf01696g06050.1	sp|Q3J7X9|HLDD_NITOC	***-	ADP-L-glycero-D-manno-heptose-6-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf25294g00001.1	gb|AFI44273.1|	****	rib L5 (mitochondrion) [Silene vulgaris]	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05767g08017.1	sp|Q96RT7|GCP6_HUMAN	*-*-	Gamma-tubulin complex component 6	IPR007259 (Gamma-tubulin complex component protein)	GO:0000226 (microtubule cytoskeleton organization), GO:0000922 (spindle pole), GO:0005815 (microtubule organizing center)
Niben101Scf00024g03018.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf10384g01014.1	AT5G05830.1	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=204	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf12941g00007.1	ref|XP_003629442.1|	--**	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf01371g02009.1	AT4G36660.1	***-	Protein of unknown function (DUF1195) LENGTH=179	IPR010608 (Protein of unknown function DUF1195)	
Niben101Scf05307g01014.1	ref|XP_002532106.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF30268.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02284g01005.1			Unknown protein		
Niben101Scf01669g04021.1	sp|P46302|RS28_MAIZE	***-	40S ribosomal protein S28	IPR000289 (Ribosomal protein S28e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00870g12005.1			Unknown protein		
Niben101Scf28294g00001.1	sp|Q7FNS8|PSAI_ATRBE	****	Photosystem I reaction center subunit VIII	IPR001302 (Photosystem I PsaI, reaction centre subunit VIII)	GO:0009522 (photosystem I), GO:0015979 (photosynthesis)
Niben101Scf10329g02003.1			Unknown protein		
Niben101Scf02929g01054.1	AT2G07820.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=88		
Niben101Scf02245g01018.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03850g00004.1	emb|CDY13384.1|	--*-	BnaC06g13730D [Brassica napus]		
Niben101Scf02074g05078.1	ref|XP_002535501.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF26883.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06088g00020.1	sp|Q5RBD9|TBCE_PONAB	*-*-	Tubulin-specific chaperone E	IPR000938 (CAP Gly-rich domain)	
Niben101Scf04439g01004.1	sp|Q54GX5|PEX1_DICDI	*-**	Peroxisome biogenesis factor 1	IPR009010 (Aspartate decarboxylase-like domain), IPR025653 (Peroxisome biogenesis factor 1), IPR029067 (CDC48 domain 2-like)	GO:0005524 (ATP binding), GO:0005777 (peroxisome), GO:0005778 (peroxisomal membrane), GO:0006625 (protein targeting to peroxisome), GO:0007031 (peroxisome organization), GO:0042623 (ATPase activity, coupled)
Niben101Scf01249g02006.1	sp|Q9LRJ4|BH117_ARATH	*-*-	Transcription factor bHLH117	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00414g05005.1	AT2G04220.1	***-	Plant protein of unknown function (DUF868) LENGTH=307	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Ctg08039g00001.1	sp|Q9C554|EXPA1_ARATH	*-*-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf00858g04014.1			Unknown protein		
Niben101Scf02270g02031.1	sp|Q9C4Z6|GPLPB_ARATH	--**	Guanine nucleotide-binding protein subunit beta-like protein B	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03810g02001.1	sp|Q68FK8|DHX9_XENLA	*-**	ATP-dependent RNA helicase A-like protein	IPR001374 (Single-stranded nucleic acid binding R3H), IPR001482 (Type II secretion system protein E), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0006810 (transport)
Niben101Scf02261g00005.1	gb|KEH18775.1|	****	hydrolyzing O-glycosyl compounds hydrolase [Medicago truncatula]	IPR000772 (Ricin B lectin domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02895g03001.1	sp|Q9SLK6|ALA6_ARATH	*-**	Phospholipid-transporting ATPase 6	IPR006539 (P-type ATPase, subfamily IV), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane)
Niben101Scf00484g02009.1	emb|CDX86616.1|	*-*-	BnaC08g00870D [Brassica napus]	IPR027902 (Protein of unknown function DUF4487)	
Niben101Scf12159g08001.1	sp|P08985|H2AV_DROME	***-	Histone H2A.v	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf00724g00006.1			Unknown protein		
Niben101Scf07008g01017.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04410g08011.1	sp|P09394|GLPQ_ECOLI	****	Glycerophosphoryl diester phosphodiesterase	IPR004129 (Glycerophosphoryl diester phosphodiesterase)	GO:0006071 (glycerol metabolic process), GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity), GO:0008889 (glycerophosphodiester phosphodiesterase activity)
Niben101Scf03600g00018.1	sp|Q67ZU1|LIP2_ARATH	***-	Triacylglycerol lipase 2	IPR006693 (Partial AB-hydrolase lipase domain), IPR025483 (Lipase, eukaryotic), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02279g07004.1	ref|XP_010109905.1|	--*-	D-2-hydroxyglutarate dehydrogenase [Morus notabilis] gb|EXC24874.1| D-2-hydroxyglutarate dehydrogenase [Morus notabilis]		
Niben101Scf08895g01020.1	AT2G14960.1	***-	Auxin-responsive GH3 family protein LENGTH=590	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf08351g00003.1	AT3G22970.1	*-*-	Protein of unknown function (DUF506) LENGTH=370	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf00530g06014.1	AT4G11070.1	*-**	WRKY family transcription factor LENGTH=313	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg15720g00002.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf07152g04015.1	sp|Q9LQQ4|H2B1_ARATH	***-	Histone H2B.1	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf07829g04024.1	sp|Q66IF1|REEP6_DANRE	*-*-	Receptor expression-enhancing protein 6	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf00870g17014.1	sp|C1D6I1|RL34_LARHH	*-*-	50S ribosomal protein L34	IPR000271 (Ribosomal protein L34)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00370g04010.1	ref|XP_003591103.1|	*-*-	Nucleolar GTPase [Medicago truncatula] gb|AES61354.1| nucleolar GTPase, putative [Medicago truncatula]		
Niben101Scf08250g03014.1			Unknown protein		
Niben101Ctg13986g00002.1			Unknown protein		
Niben101Scf05519g02008.1	ref|XP_007044888.1|	*-*-	Pyridoxal-5'-ph isoform 1 [Theobroma cacao]	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme)	
Niben101Scf14069g02006.1	AT2G30880.1	*-*-	Pleckstrin homology (PH) domain-containing protein LENGTH=504	IPR011993 (Pleckstrin homology-like domain)	
Niben101Ctg14687g00001.1			Unknown protein		
Niben101Scf03249g01008.1	sp|Q9SA78|COPE1_ARATH	***-	Coatomer subunit epsilon-1	IPR006822 (Coatomer, epsilon subunit)	GO:0005198 (structural molecule activity), GO:0005515 (protein binding), GO:0006890 (retrograde vesicle-mediated transport, Golgi to ER)
Niben101Scf05516g03010.1	sp|Q54VZ8|EXOC8_DICDI	--*-	Exocyst complex component 8	IPR016159 (Cullin repeat-like-containing domain)	
Niben101Scf38876g00001.1	sp|Q8A8C3|DNAJ_BACTN	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf01182g02012.1	ref|XP_003630569.1|	***-	Mitochondrial phosphate carrier protein [Medicago truncatula]	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf03006g07004.1			Unknown protein		
Niben101Scf08374g07008.1	AT4G28390.1	***-	ADP/ATP carrier 3 LENGTH=379	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf05674g05014.1	sp|O04279|GPA2_PEA	*-**	Guanine nucleotide-binding protein alpha-2 subunit	IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0007186 (G-protein coupled receptor signaling pathway), GO:0019001 (guanyl nucleotide binding), GO:0031683 (G-protein beta/gamma-subunit complex binding)
Niben101Scf01100g04013.1	sp|Q9M1V3|PP296_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf06826g03001.1	emb|CDX67657.1|	***-	BnaA07g16970D [Brassica napus]		
Niben101Scf07673g04006.1			Unknown protein		
Niben101Scf12515g00016.1	emb|CDX88033.1|	*-*-	BnaA06g26240D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf04396g04003.1	ref|NP_188895.1|	****	GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] dbj|BAB01471.1| alanine acetyl transferase-like protein [Arabidopsis thaliana] gb|ABN04781.1| [Arabidopsis thaliana] gb|AEE76653.1| GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana]	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf17046g00004.1			Unknown protein		
Niben101Ctg04444g00001.1	emb|CDY02062.1|	*-*-	BnaC04g14390D [Brassica napus]		
Niben101Scf02516g01004.1	sp|Q9C519|WRKY6_ARATH	****	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08679g04021.1	sp|Q9ZP55|DRP4C_ARATH	*-*-	Dynamin-related protein 4C	IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf08015g03002.1			Unknown protein		
Niben101Scf10157g05001.1	sp|P10691|SUS1_SOLTU	****	Sucrose synthase	IPR012820 (Sucrose synthase, plant/cyanobacteria)	GO:0005985 (sucrose metabolic process), GO:0009058 (biosynthetic process), GO:0016157 (sucrose synthase activity)
Niben101Scf06761g00022.1			Unknown protein		
Niben101Scf01930g00012.1	sp|O24645|HCBT1_DIACA	--*-	Anthranilate N-benzoyltransferase protein 1	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01412g00021.1	gb|KFV93691.1|	***-	UPF0369 protein C6orf57, partial [Fulmarus glacialis]	IPR012875 (Protein of unknown function DUF1674)	
Niben101Scf32481g00008.1	sp|Q8SSK6|ALDR_ENCCU	*-**	Aldose reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01687g03006.1	sp|Q9LSL9|PP445_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04364g00002.1			Unknown protein		
Niben101Scf04731g11004.1	sp|Q39962|CBPR_HEVBR	***-	Citrate-binding protein	IPR013320 (Concanavalin A-like lectin/glucanase domain)	
Niben101Scf00941g03002.1	ref|XP_007010713.1|	*-*-	Mitochondrial transcription termination factor family protein, putative isoform 1 [Theobroma cacao] gb|EOY19523.1| Mitochondrial transcription termination factor family protein, putative isoform 1 [Theobroma cacao]		
Niben101Scf02903g04002.1	gb|KEH18175.1|	--*-	vacuolar iron transporter-like protein [Medicago truncatula]		
Niben101Scf00981g04015.1			Unknown protein		
Niben101Scf03534g00008.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02361g03009.1	sp|A7VLV1|SGRW_PEA	***-	Protein STAY-GREEN, chloroplastic	IPR024438 (Staygreen protein)	
Niben101Scf04700g03006.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08709g02009.1	sp|Q8LPL5|FZR3_ARATH	*-*-	Protein FIZZY-RELATED 3		
Niben101Scf02262g02012.1	AT5G54690.1	****	galacturonosyltransferase 12 LENGTH=535	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf23282g01002.1	sp|Q39264|ZFP5_ARATH	***-	Zinc finger protein 5	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf02172g06029.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08029g04007.1	sp|P56902|FABF_RHIME	***-	3-oxoacyl-[acyl-carrier-protein] synthase 2	IPR020841 (Polyketide synthase, beta-ketoacyl synthase domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf09475g01022.1	sp|Q67S53|DNAJ_SYMTH	--*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf07451g00001.1	sp|O64380|PABP3_ARATH	*-**	Polyadenylate-binding protein 3	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01300g03001.1			Unknown protein		
Niben101Scf01511g00020.1	tpg|DAA46821.1|	*-*-	TPA: hypothetical protein ZEAMMB73_209224 [Zea mays]		
Niben101Scf04870g01001.1	AT3G26590.1	*-*-	MATE efflux family protein LENGTH=500	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf05132g03012.1	sp|Q6NPT8|PP2B1_ARATH	--*-	F-box protein PP2-B1	IPR025886 (Phloem protein 2-like)	
Niben101Scf04950g07001.1	AT5G65340.1	***-	Protein of unknown function, DUF617 LENGTH=253	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Scf03332g04013.1	sp|Q3U288|ZN710_MOUSE	--*-	Zinc finger protein 710	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR029789 (Protein TRANSPARENT TESTA 1 like)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf18623g00013.1	sp|Q9LK24|FB327_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00905g04002.1	sp|Q07060|ATP9_PETSP	--**	ATP synthase subunit 9, mitochondrial	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Ctg16231g00004.1	gb|EMT00535.1|	--*-	Translocon-associated protein subunit beta [Aegilops tauschii]	IPR008856 (Translocon-associated protein subunit beta)	GO:0005783 (endoplasmic reticulum), GO:0016021 (integral component of membrane)
Niben101Scf13571g04004.1			Unknown protein		
Niben101Scf02583g00004.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf02994g03003.1	ref|WP_024571788.1|	****	copper oxidase [Bacillus subtilis]	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02406g01019.1	sp|Q9NGQ2|KIF1_DICDI	*-**	Kinesin-related protein 1	IPR001752 (Kinesin motor domain), IPR024658 (Kinesin-like, KLP2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf01642g00016.1	sp|Q9LD28|H2A6_ARATH	--*-	Histone H2A.6	IPR009072 (Histone-fold)	GO:0046982 (protein heterodimerization activity)
Niben101Scf07253g01008.1	AT5G17230.3	***-	PHYTOENE SYNTHASE LENGTH=437	IPR002060 (Squalene/phytoene synthase)	GO:0009058 (biosynthetic process), GO:0016740 (transferase activity), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf12266g02002.1	sp|Q06881|BCCP_NOSS1	***-	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	IPR000089 (Biotin/lipoyl attachment)	
Niben101Scf00704g02007.1	sp|Q9FH05|SCP42_ARATH	****	Serine carboxypeptidase-like 42	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00377g01003.1	sp|Q8K9X7|NUOL_BUCAP	*-*-	NADH-quinone oxidoreductase subunit L	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf08792g00011.1	sp|Q5ZIH9|CC174_CHICK	*-*-	Coiled-coil domain-containing protein 174		
Niben101Scf03541g00011.1	AT5G35740.1	***-	Carbohydrate-binding X8 domain superfamily protein LENGTH=119	IPR012946 (X8 domain)	
Niben101Scf07778g03022.1	sp|Q9LXJ0|FTZ22_ARATH	*-*-	Cell division protein FtsZ homolog 2-2, chloroplastic		
Niben101Scf10482g01024.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf11245g02003.1	sp|B6SGC5|CNR6_MAIZE	***-	Cell number regulator 6	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf10448g00018.1	sp|A6L0Z9|KAD_BACV8	****	Adenylate kinase	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004127 (cytidylate kinase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0006207 ('de novo' pyrimidine nucleobase biosynthetic process), GO:0006221 (pyrimidine nucleotide biosynthetic process), GO:0009041 (uridylate kinase activity), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf09092g00018.1			Unknown protein		
Niben101Scf03471g00007.1	sp|Q94B77|FH5_ARATH	*-*-	Formin-like protein 5	IPR015425 (Formin, FH2 domain)	
Niben101Scf30946g00021.1	sp|Q95044|UBE2C_SPISO	-**-	Ubiquitin-conjugating enzyme E2 C	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf11103g02004.1	sp|A4XY05|FOLD3_PSEMY	***-	Bifunctional protein FolD 3	IPR000672 (Tetrahydrofolate dehydrogenase/cyclohydrolase)	GO:0003824 (catalytic activity), GO:0004488 (methylenetetrahydrofolate dehydrogenase (NADP+) activity), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf08519g01019.1	ref|XP_002518811.1|	****	nucleic acid binding protein, putative [Ricinus communis] gb|EEF43736.1| nucleic acid binding protein, putative [Ricinus communis]	IPR001878 (Zinc finger, CCHC-type), IPR012923 (Replication fork protection component Swi3)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus), GO:0006974 (cellular response to DNA damage stimulus), GO:0007049 (cell cycle), GO:0008270 (zinc ion binding), GO:0048478 (replication fork protection)
Niben101Scf10542g00013.1	ref|NP_182221.1|	***-	ASYNAPTIC 3 [Arabidopsis thaliana] gb|AAC34237.1| hypothetical protein [Arabidopsis thaliana] gb|AEC10780.1| ASYNAPTIC 3 [Arabidopsis thaliana]		
Niben101Scf01152g02019.1	ref|XP_007029644.1|	***-	Plasma membrane isoform 4 [Theobroma cacao] gb|EOY10146.1| Plasma membrane isoform 4 [Theobroma cacao]		
Niben101Scf01943g05010.1	sp|Q92576|PHF3_HUMAN	--*-	PHD finger protein 3	IPR001025 (Bromo adjacent homology (BAH) domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Ctg12453g00002.1	sp|Q9SEE5|GALK1_ARATH	*-**	Galactokinase	IPR000705 (Galactokinase)	GO:0004335 (galactokinase activity), GO:0005524 (ATP binding), GO:0006012 (galactose metabolic process), GO:0046835 (carbohydrate phosphorylation)
Niben101Scf00324g02012.1	AT4G23895.1	*-*-	Pleckstrin homology (PH) domain-containing protein LENGTH=247		
Niben101Scf01812g03006.1	AT5G06560.1	***-	Protein of unknown function, DUF593 LENGTH=518	IPR007656 (Zein-binding domain)	
Niben101Scf02289g07017.1	AT3G02130.1	****	receptor-like protein kinase 2 LENGTH=1151	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09392g00004.1	sp|Q9SL95|MOT1_ARATH	****	Molybdate transporter 1	IPR030161 (Molybdate transporter 1)	GO:0015098 (molybdate ion transmembrane transporter activity), GO:0015689 (molybdate ion transport), GO:0016021 (integral component of membrane)
Niben101Scf00715g09002.1	AT1G80860.2	*-**	phospholipid N-methyltransferase LENGTH=164	IPR024960 (Phosphatidyl-N-methylethanolamine/N-methyltransferase)	GO:0006644 (phospholipid metabolic process), GO:0008170 (N-methyltransferase activity)
Niben101Scf01375g02006.1	sp|Q9FLX3|FB293_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05201g01003.1	AT1G80270.1	***-	PENTATRICOPEPTIDE REPEAT 596 LENGTH=596	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04039g03005.1	dbj|BAM42646.1|	*-*-	polyprotein [Arabidopsis thaliana]	IPR029472 (Gag-polypeptide of LTR copia-type)	
Niben101Scf01322g03023.1	sp|Q9SL79|CAF1P_ARATH	***-	CRS2-associated factor 1, chloroplastic	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf06674g02005.1	emb|CDY34490.1|	*-*-	BnaC04g13090D [Brassica napus]		
Niben101Scf06404g00025.1	sp|Q5PLL9|GHRB_SALPA	--*-	Glyoxylate/hydroxypyruvate reductase B	IPR016040 (NAD(P)-binding domain)	GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08162g00034.1	ref|XP_007040750.1|	--*-	Zinc ion binding,nucleic acid binding-like protein [Theobroma cacao] gb|EOY25251.1| Zinc ion binding,nucleic acid binding-like protein [Theobroma cacao]		
Niben101Scf07579g01012.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02881g00003.1	sp|Q9ZNS1|RS7_AVIMR	*-*-	40S ribosomal protein S7	IPR000554 (Ribosomal protein S7e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09791g00009.1	gb|KGJ18355.1|	***-	epimerase [Paracoccus sp. 5503]	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf01673g02001.1	sp|Q8CWM6|TRUA_THEEB	*-**	tRNA pseudouridine synthase A	IPR001406 (Pseudouridine synthase I, TruA), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf03562g03008.1	AT3G27000.1	*-**	actin related protein 2 LENGTH=389	IPR004000 (Actin family)	GO:0005524 (ATP binding), GO:0005856 (cytoskeleton), GO:0005885 (Arp2/3 protein complex), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf02894g00002.1	AT3G21690.1	*-*-	MATE efflux family protein LENGTH=506		
Niben101Scf05553g00008.1	sp|A0JM56|LRRC9_XENTR	*-*-	Leucine-rich repeat-containing protein 9	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf02793g15017.1	sp|Q9LEH3|PER15_IPOBA	****	Peroxidase 15	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01587g02009.1	sp|Q6IP06|STK3_XENLA	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain), IPR016024 (Armadillo-type fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01520g08031.1	AT4G39210.1	****	Glucose-1-phosphate adenylyltransferase family protein LENGTH=521	IPR011831 (Glucose-1-phosphate adenylyltransferase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005978 (glycogen biosynthetic process), GO:0008878 (glucose-1-phosphate adenylyltransferase activity), GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf07533g02014.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf02098g01013.1	sp|Q5M782|RIPB_XENLA	***-	RPA-interacting protein B	IPR028155 (RPA-interacting protein, central domain), IPR028156 (RPA-interacting protein), IPR028158 (RPA-interacting protein, N-terminal domain), IPR028159 (RPA-interacting protein, C-terminal domain)	
Niben101Scf00317g09002.1	sp|Q67X83|HS26M_ORYSJ	*-*-	26.2 kDa heat shock protein, mitochondrial	IPR008978 (HSP20-like chaperone)	
Niben101Scf00854g04021.1			Unknown protein		
Niben101Scf01065g02001.1	AT5G11030.2	***-	aberrant lateral root formation 4 LENGTH=602	IPR013877 (YAP-binding/ALF4/Glomulin), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00961g04008.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf14883g00008.1			Unknown protein		
Niben101Scf03445g01008.1	gb|AES64121.2|	***-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf01317g02003.1	dbj|BAB13710.1|	***-	elicitor resposible protein [Nicotiana tabacum] gb|AAS55699.1| TCIP [Nicotiana tabacum]		
Niben101Scf10713g00016.1	sp|P79011|T2EB_SCHPO	****	Transcription initiation factor IIE subunit beta	IPR003166 (Transcription factor TFIIE beta subunit, DNA-binding domain)	GO:0005673 (transcription factor TFIIE complex), GO:0006367 (transcription initiation from RNA polymerase II promoter)
Niben101Ctg14757g00001.1	sp|Q5XF59|HIBC4_ARATH	*-*-	3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial	IPR029045 (ClpP/crotonase-like domain)	
Niben101Scf01269g06010.1	gb|KEH24590.1|	***-	coatomer protein [Medicago truncatula]		
Niben101Scf02354g06006.1	ref|XP_002534687.1|	*-*-	NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis] gb|EEF27701.1| NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis]		
Niben101Scf04021g06011.1	sp|B3LJ06|AIM39_YEAS1	--*-	Altered inheritance of mitochondria protein 39, mitochondrial		
Niben101Scf04267g00003.1	sp|Q9S7R7|Y3903_ARATH	--*-	BTB/POZ domain-containing protein	IPR001646 (Pentapeptide repeat), IPR011333 (BTB/POZ fold)	GO:0051260 (protein homooligomerization)
Niben101Scf01676g02013.1	sp|Q0STS9|MIAB_CLOPS	***-	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	IPR007197 (Radical SAM), IPR023970 (Methylthiotransferase/radical SAM-type protein)	GO:0003824 (catalytic activity), GO:0009451 (RNA modification), GO:0016740 (transferase activity), GO:0043412 (macromolecule modification), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf06454g02009.1	sp|Q940T9|COL4_ARATH	****	Zinc finger protein CONSTANS-LIKE 4	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Ctg13647g00002.1	sp|Q75B50|DED1_ASHGO	*-**	ATP-dependent RNA helicase DED1	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf00438g02005.1			Unknown protein	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf02346g03013.1	AT4G19110.2	****	Protein kinase superfamily protein LENGTH=464	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09151g01002.1	ref|XP_002530519.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF31851.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07137g00005.1	sp|P46302|RS28_MAIZE	*-*-	40S ribosomal protein S28	IPR000289 (Ribosomal protein S28e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04119g02016.1	gb|ADK87910.1|	--*-	AtV27-like protein, partial [Arabidopsis halleri]		
Niben101Scf01937g02007.1	sp|Q8VZ17|SUVH6_ARATH	*-**	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6	IPR003105 (SRA-YDG), IPR015947 (PUA-like domain)	GO:0042393 (histone binding)
Niben101Scf02791g01006.1			Unknown protein		
Niben101Scf05422g00018.1	sp|P98205|ALA2_ARATH	****	Phospholipid-transporting ATPase 2	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf04332g00003.1	ref|XP_005708044.1|	*-**	transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Galdieria sulphuraria] gb|EME31524.1| transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Galdieria sulphuraria]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf08566g08014.1	sp|Q9XIV8|PERN1_TOBAC	****	Peroxidase N1	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00404g02004.1	ref|XP_002524675.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF37694.1| conserved hypothetical protein [Ricinus communis]	IPR019186 (Nucleolar protein 12)	
Niben101Scf00620g01005.1	sp|Q9LNT9|ASK4_ARATH	***-	SKP1-like protein 4	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf00298g02018.1	sp|P13869|CB12_PETHY	***-	Chlorophyll a-b binding protein, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf09620g00003.1	sp|Q58DW6|RAB25_BOVIN	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf03445g01009.1	sp|Q84JS6|KNAT6_ARATH	*-*-	Homeobox protein knotted-1-like 6	IPR005540 (KNOX1), IPR005541 (KNOX2)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf03631g01004.1	sp|P16954|GLGB_SYNE7	****	1,4-alpha-glucan branching enzyme GlgB	IPR013780 (Glycosyl hydrolase, family 13, all-beta), IPR015902 (Glycoside hydrolase, family 13)	GO:0003824 (catalytic activity), GO:0003844 (1,4-alpha-glucan branching enzyme activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0005978 (glycogen biosynthetic process), GO:0043169 (cation binding)
Niben101Scf11767g02018.1	sp|P46417|GSTX3_SOYBN	***-	Glutathione S-transferase 3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf03595g05010.1	ref|XP_002523770.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38619.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06488g00011.1	sp|O64882|BGL17_ARATH	***-	Beta-glucosidase 17	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf10669g00007.1	ref|XP_007037301.1|	--*-	Ran GTPase binding protein, putative isoform 4 [Theobroma cacao] gb|EOY21802.1| Ran GTPase binding protein, putative isoform 4 [Theobroma cacao]		
Niben101Scf06825g02006.1	sp|O80396|M2K3_ARATH	*-*-	Mitogen-activated protein kinase kinase 3		
Niben101Scf02098g01012.1	AT3G32047.1	***-	Cytochrome P450 superfamily protein LENGTH=502	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05553g00009.1	gb|KEH34949.1|	*-*-	outer arm dynein light chain 1 [Medicago truncatula]		
Niben101Scf05389g00003.1	sp|Q54S79|WDR3_DICDI	*-*-	WD repeat-containing protein 3 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf11702g00021.1	sp|Q0THE9|SUFS_ECOL5	*-*-	Cysteine desulfurase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02854g02005.1	AT1G48480.1	****	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07766g00012.1	ref|WP_011175139.1|	*-**	amino acid transporter [Candidatus Protochlamydia amoebophila] ref|YP_007588.1| aromatic amino acid-specific transport protein [Candidatus Protochlamydia amoebophila UWE25] emb|CAF23313.1| putative aromatic amino acid-specific transport protein [Candidatus Protochlamydia amoebophila UWE25]	IPR018227 (Tryptophan/tyrosine permease)	GO:0003333 (amino acid transmembrane transport)
Niben101Scf01521g01007.1	sp|A9NEX8|NAGB_ACHLI	****	Glucosamine-6-phosphate deaminase	IPR006148 (Glucosamine/galactosamine-6-phosphate isomerase)	GO:0005975 (carbohydrate metabolic process), GO:0006098 (pentose-phosphate shunt), GO:0017057 (6-phosphogluconolactonase activity)
Niben101Scf02572g02001.1	sp|Q9ZSY8|IAA27_ARATH	***-	Auxin-responsive protein IAA27	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf01064g05002.1	ref|XP_001836686.2|	***-	nonribosomal peptide synthetase 12 [Coprinopsis cinerea okayama7#130] gb|EAU85098.2| nonribosomal peptide synthetase 12 [Coprinopsis cinerea okayama7#130]		
Niben101Scf00682g02004.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf17749g00005.1	emb|CDY19669.1|	*-*-	BnaC09g29250D [Brassica napus]		
Niben101Scf11706g00025.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04785g01033.1	sp|Q9SRV3|LBD20_ARATH	*-*-	LOB domain-containing protein 20	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf01053g00008.1	sp|Q8W4I4|POT6_ARATH	****	Potassium transporter 6	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf12680g05007.1	gb|ADM94222.1|	*-*-	TGN-localized SYP41-interacting protein [Arabidopsis thaliana]		
Niben101Scf09552g00003.1	AT3G05840.2	****	Protein kinase superfamily protein LENGTH=409	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg11592g00002.1			Unknown protein		
Niben101Scf00854g07036.1	sp|Q8DMM9|RL23_THEEB	--*-	50S ribosomal protein L23	IPR002541 (Cytochrome c assembly protein), IPR003557 (Cytochrome c-type biogenesis protein CcmC), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf01453g02010.1	sp|Q9SQI2|GIGAN_ARATH	***-	Protein GIGANTEA	IPR026211 (GIGANTEA)	GO:2000028 (regulation of photoperiodism, flowering)
Niben101Scf07404g05004.1	sp|Q9JI10|STK3_MOUSE	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00051g05008.1	sp|Q9Y5Q8|TF3C5_HUMAN	***-	General transcription factor 3C polypeptide 5	IPR019136 (Transcription factor IIIC, subunit 5), IPR029071 (Ubiquitin-related domain)	
Niben101Scf04400g01006.1	ref|XP_007045932.1|	***-	Nodulin-related protein 1, putative [Theobroma cacao] gb|EOY01764.1| Nodulin-related protein 1, putative [Theobroma cacao]		
Niben101Scf01696g02014.1	sp|Q8IWD5|MFS6L_HUMAN	--*-	Major facilitator superfamily domain-containing protein 6-like		
Niben101Scf02393g02025.1	AT2G15780.1	*-*-	Cupredoxin superfamily protein LENGTH=257	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf10314g01001.1	sp|Q18CG9|RL29_PEPD6	-**-	50S ribosomal protein L29	IPR001854 (Ribosomal protein L29)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08926g01025.1	sp|Q9FIH9|CML37_ARATH	****	Calcium-binding protein CML37	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf14274g01006.1	AT2G19780.1	***-	Leucine-rich repeat (LRR) family protein LENGTH=402	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005515 (protein binding)
Niben101Scf00245g01003.1	sp|Q9FLQ7|FH20_ARATH	*-*-	Formin-like protein 20	IPR000008 (C2 domain), IPR015425 (Formin, FH2 domain), IPR027643 (Formin-like family, plant), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0005515 (protein binding), GO:0005884 (actin filament), GO:0045010 (actin nucleation)
Niben101Scf02936g00002.1	sp|Q058P4|PUB30_ARATH	***-	U-box domain-containing protein 30	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf00536g01005.1	gb|ACV85819.1|	***-	NBS-LRR resistance protein, partial [Hevea benthamiana]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf08191g01001.1	sp|Q93XX4|C2D61_ARATH	***-	C2 domain-containing protein	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf04094g04006.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05579g04003.1	emb|CCQ71668.1|	*-*-	Ycf1 (chloroplast) [Salvia miltiorrhiza]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf04114g01080.1			Unknown protein		
Niben101Scf05306g01007.1	AT5G42870.1	*-*-	phosphatidic acid phosphohydrolase 2 LENGTH=930	IPR007651 (Lipin, N-terminal), IPR013209 (LNS2, Lipin/Ned1/Smp2), IPR023214 (HAD-like domain)	
Niben101Scf06080g00002.1	sp|Q9FQ19|SCC13_ARATH	***-	Sister chromatid cohesion 1 protein 3	IPR006910 (Rad21/Rec8-like protein, N-terminal), IPR023093 (Rad21/Rec8-like protein, C-terminal)	GO:0000228 (nuclear chromosome), GO:0005515 (protein binding)
Niben101Scf00104g02015.1	sp|Q28H21|PCGF1_XENTR	*-*-	Polycomb group RING finger protein 1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf08200g05010.1	sp|Q86V35|CABP7_HUMAN	--**	Calcium-binding protein 7	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf05048g00001.1	sp|Q7MYW6|F16PA_PHOLL	****	Fructose-1,6-bisphosphatase class 1	IPR000146 (Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase)	GO:0005975 (carbohydrate metabolic process), GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Scf11936g01021.1	sp|Q5SMI4|RL393_ORYSJ	***-	60S ribosomal protein L39-3	IPR000077 (Ribosomal protein L39e), IPR023626 (Ribosomal protein L39e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03392g02010.1	sp|Q94AY3|DRIP2_ARATH	*-*-	E3 ubiquitin protein ligase DRIP2		
Niben101Scf00761g00004.1	sp|P82787|DEF19_ARATH	***-	Defensin-like protein 19	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf00355g02002.1	sp|Q10993|CYTB_HELAN	****	Cysteine proteinase inhibitor B	IPR000010 (Proteinase inhibitor I25, cystatin), IPR027214 (Cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf08357g03007.1	sp|Q9LFC5|PP360_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05035g04003.1	AT1G10720.1	*-*-	BSD domain-containing protein LENGTH=429	IPR005607 (BSD)	
Niben101Scf04669g00003.1	ref|NP_001060272.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf04473g12002.1	AT5G05140.1	****	Transcription elongation factor (TFIIS) family protein LENGTH=436	IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf10022g00012.1	sp|Q9SAK8|CHX2_ARATH	****	Cation/H(+) antiporter 2	IPR006153 (Cation/H+ exchanger), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf09590g00009.1	sp|Q5ZLK2|UBX2B_CHICK	***-	UBX domain-containing protein 2B	IPR012989 (SEP domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf11224g00005.1	emb|CDX98538.1|	*-*-	BnaC05g38370D [Brassica napus]		
Niben101Scf08249g02004.1	sp|O80341|EF102_ARATH	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf34675g00005.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03777g00003.1	sp|Q8S8U1|YCF2B_ATRBE	*-*-	Protein Ycf2 B	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf00528g01005.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10101g00007.1	sp|O24575|DCAM_MAIZE	*-**	S-adenosylmethionine decarboxylase proenzyme	IPR001985 (S-adenosylmethionine decarboxylase), IPR016067 (S-adenosylmethionine decarboxylase, core)	GO:0004014 (adenosylmethionine decarboxylase activity), GO:0006597 (spermine biosynthetic process), GO:0008295 (spermidine biosynthetic process)
Niben101Scf00851g00021.1	gb|AID55065.1|	***-	disease resistance protein, partial [Solanum habrochaites]	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf02853g03004.1	emb|CDX73681.1|	*-*-	BnaC08g23220D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf03401g01009.1	gb|ACZ73653.1|	--*-	glycine-rich protein precursor [Nicotiana tabacum]	IPR010800 (Glycine rich protein)	
Niben101Scf09310g01007.1	gb|ABI17450.1|	--*-	transposase [Fargesia fungosa]		
Niben101Scf01894g02009.1			Unknown protein		
Niben101Scf01578g05008.1	gb|ACN78838.1|	***-	alliinase [Allium sativum]	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016846 (carbon-sulfur lyase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf04174g06004.1	sp|C3VEQ3|NCED_ONCHC	***-	9-cis-epoxycarotenoid dioxygenase, chloroplastic	IPR004294 (Carotenoid oxygenase)	
Niben101Scf00895g00008.1	ref|XP_007021564.1|	***-	30S rib S20 isoform 2 [Theobroma cacao]		
Niben101Scf03101g01009.1	sp|Q76K24|ANR46_RAT	--*-	Ankyrin repeat domain-containing protein 46	IPR020683 (Ankyrin repeat-containing domain), IPR021094 (NPR1/NIM1-like, C-terminal)	
Niben101Scf08963g00004.1	sp|Q8GX77|FB316_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf10532g00001.1	sp|Q1XDK5|BCCP_PYRYE	--*-	Biotin carboxyl carrier protein of acetyl-CoA carboxylase		
Niben101Scf01959g04001.1	AT4G03520.1	*-*-	Thioredoxin superfamily protein LENGTH=186	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02368g00011.1	sp|F4IDU4|MBOA1_ARATH	***-	Lysophospholipid acyltransferase 1	IPR004299 (Membrane bound O-acyl transferase, MBOAT)	
Niben101Scf02300g00021.1	AT5G05200.1	***-	Protein kinase superfamily protein LENGTH=540	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00946g00011.1			Unknown protein		
Niben101Scf03791g01012.1	sp|Q84W80|FBL42_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00735g03007.1	AT1G14770.1	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=429	IPR009057 (Homeodomain-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01930g00013.1	AT1G24430.1	****	HXXXD-type acyl-transferase family protein LENGTH=435	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01789g00004.1	AT2G39430.1	*-*-	Disease resistance-responsive (dirigent-like protein) family protein LENGTH=322	IPR004265 (Plant disease resistance response protein)	
Niben101Scf00700g09012.1	sp|Q43609|COMT1_PRUDU	*-**	Caffeic acid 3-O-methyltransferase	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity)
Niben101Scf00955g05007.1	AT4G32250.1	****	Protein kinase superfamily protein LENGTH=611	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06700g02002.1	AT1G55810.1	****	uridine kinase-like 3 LENGTH=466	IPR000764 (Uridine kinase like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029057 (Phosphoribosyltransferase-like)	GO:0004849 (uridine kinase activity), GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0044206 (UMP salvage)
Niben101Scf02393g01014.1	AT2G15620.1	****	nitrite reductase 1 LENGTH=586	IPR005117 (Nitrite/Sulfite reductase ferredoxin-like domain), IPR006067 (Nitrite/sulphite reductase 4Fe-4S domain)	GO:0016491 (oxidoreductase activity), GO:0020037 (heme binding), GO:0051536 (iron-sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00426g02026.1	sp|Q9SU25|T2FA_ARATH	****	Transcription initiation factor IIF subunit alpha	IPR001280 (Photosystem I PsaA/PsaB), IPR008851 (Transcription initiation factor IIF, alpha subunit)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0005634 (nucleus), GO:0006367 (transcription initiation from RNA polymerase II promoter), GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0032968 (positive regulation of transcription elongation from RNA polymerase II promoter)
Niben101Scf10737g00028.1	sp|Q9H6B9|EPHX3_HUMAN	***-	Epoxide hydrolase 3	IPR000639 (Epoxide hydrolase-like), IPR029058 (Alpha/Beta hydrolase fold)	GO:0003824 (catalytic activity)
Niben101Scf09907g01003.1	sp|O81767|PP348_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf06618g00005.1			Unknown protein		
Niben101Scf10579g00011.1	AT5G62570.2	*-*-	Calmodulin binding protein-like LENGTH=494	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf08984g05009.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04528g11002.1	sp|O04379|AGO1_ARATH	*-*-	Protein argonaute 1		
Niben101Scf03643g02032.1	sp|Q3T4C0|COX2_SMICU	*-**	Cytochrome c oxidase subunit 2	IPR008972 (Cupredoxin), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0005840 (ribosome), GO:0006412 (translation), GO:0016020 (membrane)
Niben101Scf02062g03003.1	sp|O76094|SRP72_HUMAN	****	Signal recognition particle subunit SRP72	IPR011990 (Tetratricopeptide-like helical domain), IPR013699 (Signal recognition particle, SRP72 subunit, RNA-binding), IPR026270 (Signal recognition particle, SRP72 subunit)	GO:0005515 (protein binding), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0048500 (signal recognition particle)
Niben101Scf02828g00018.1	ref|WP_009753909.1|	--*-	cell division protein [Selenomonas sp. oral taxon 149] gb|EFM22175.1| cell division protein FtsA [Selenomonas sp. oral taxon 149 str. 67H29BP]	IPR020478 (AT hook-like)	GO:0003677 (DNA binding)
Niben101Ctg13778g00003.1	gb|AES77901.2|	*-*-	aldo/keto reductase family oxidoreductase [Medicago truncatula]	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf02819g00003.1	AT5G20190.1	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=290	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf07984g02016.1	sp|Q2HJI8|RAB8B_BOVIN	***-	Ras-related protein Rab-8B	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02437g00008.1	AT3G22200.2	*-**	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein LENGTH=513	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf34135g00003.1	sp|B2S889|GLO2_BRUA1	***-	Hydroxyacylglutathione hydrolase	IPR001279 (Beta-lactamase-like)	
Niben101Scf01607g03007.1	AT1G35490.1	****	bZIP family transcription factor LENGTH=300	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf10676g00001.1	AT3G07310.1	***-	Protein of unknown function (DUF760) LENGTH=368	IPR008479 (Protein of unknown function DUF760)	
Niben101Scf19159g01006.1	sp|Q9M7K4|POT5_ARATH	*-**	Potassium transporter 5	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf02165g02001.1	AT2G28315.1	***-	Nucleotide/sugar transporter family protein LENGTH=342	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf03694g04005.1	sp|A3MKT2|LPXD_BURM7	*-*-	UDP-3-O-acylglucosamine N-acyltransferase	IPR011004 (Trimeric LpxA-like)	
Niben101Scf00870g07010.1	gb|AET01824.2|	***-	DNA-binding protein, putative [Medicago truncatula]	IPR021950 (Transcription factor Spt20)	GO:0000124 (SAGA complex), GO:0003712 (transcription cofactor activity)
Niben101Scf02085g18002.1	AT3G11340.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=447	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf11649g00004.1	gb|KEH20515.1|	****	zinc ion-binding protein [Medicago truncatula]	IPR012935 (Zinc finger, C3HC-like)	GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf15543g00002.1	AT2G14820.1	***-	Phototropic-responsive NPH3 family protein LENGTH=634	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain), IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0005515 (protein binding), GO:0009958 (positive gravitropism)
Niben101Scf04794g01015.1	sp|P11422|RBL_NICOT	*-*-	Ribulose bisphosphate carboxylase large chain	IPR000685 (Ribulose bisphosphate carboxylase, large subunit, C-terminal)	GO:0000287 (magnesium ion binding)
Niben101Scf07147g01016.1	sp|O23310|NFYB3_ARATH	****	Nuclear transcription factor Y subunit B-3	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf08470g06024.1	sp|Q60482|RPC9_CAVPO	*-**	DNA-directed RNA polymerase III subunit RPC9	IPR005574 (RNA polymerase II, Rpb4)	GO:0000166 (nucleotide binding), GO:0003824 (catalytic activity), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0044237 (cellular metabolic process)
Niben101Scf14012g01005.1	sp|Q84KJ6|AMT31_ORYSJ	*-**	Ammonium transporter 3 member 1	IPR001905 (Ammonium transporter), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf00914g03001.1	ref|XP_003621388.1|	--*-	30S ribosomal protein S2 [Medicago truncatula]		
Niben101Scf06758g00002.1			Unknown protein		
Niben101Scf00747g07002.1	AT3G14090.1	****	exocyst subunit exo70 family protein D3 LENGTH=623	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf12045g06037.1	AT1G55190.1	***-	PRA1 (Prenylated rab acceptor) family protein LENGTH=189	IPR004895 (Prenylated rab acceptor PRA1)	
Niben101Scf00812g01006.1	sp|Q8W234|SEUSS_ARATH	*-*-	Transcriptional corepressor SEUSS	IPR029005 (LIM-domain binding protein/SEUSS)	
Niben101Scf00915g02001.1	sp|Q8T197|DHRS7_DICDI	****	Dehydrogenase/reductase SDR family protein 7-like	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf06085g00013.1	AT4G27640.1	*-*-	ARM repeat superfamily protein LENGTH=1048	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf03985g02028.1	sp|B0G159|MCFC_DICDI	***-	Mitochondrial substrate carrier family protein C	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf08002g01016.1	AT5G39380.1	*-**	Plant calmodulin-binding protein-related LENGTH=507	IPR012417 (Calmodulin-binding domain, plant)	GO:0005516 (calmodulin binding)
Niben101Scf03854g03011.1			Unknown protein		
Niben101Scf00597g06001.1	sp|Q7NFW6|PSAE_GLOVI	****	Photosystem I reaction center subunit IV	IPR003375 (Photosystem I PsaE, reaction centre subunit IV)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf00788g03041.1	AT2G24650.1	*-**	DNA binding;DNA binding;sequence-specific DNA binding transcription factors LENGTH=1045	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf07346g04003.1	AT4G19420.1	***-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05434g03014.1	AT1G70940.1	***-	Auxin efflux carrier family protein LENGTH=640	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00154g09001.1	sp|Q8W4I4|POT6_ARATH	****	Potassium transporter 6	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf00288g18012.1	AT5G58520.1	****	Protein kinase superfamily protein LENGTH=604	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02155g02005.1	AT1G74780.1	*-*-	Nodulin-like / Major Facilitator Superfamily protein LENGTH=533	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf07498g01011.1	sp|O82799|NGA1_ARATH	*-**	B3 domain-containing transcription factor NGA1	IPR015300 (DNA-binding pseudobarrel domain), IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08478g03007.1	sp|Q9D099|ACER3_MOUSE	***-	Alkaline ceramidase 3	IPR008901 (Ceramidase)	GO:0006672 (ceramide metabolic process), GO:0016021 (integral component of membrane), GO:0016811 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides)
Niben101Scf04748g03004.1	sp|Q119S1|CH601_TRIEI	*-*-	60 kDa chaperonin 1	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process)
Niben101Scf02521g01012.1	sp|Q9SUY0|FB244_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf02601g07012.1	AT5G16250.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=183		
Niben101Scf05997g00002.1	sp|Q9SIM4|RL141_ARATH	***-	60S ribosomal protein L14-1	IPR002784 (Ribosomal protein L14), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf14009g01001.1	AT5G14020.1	***-	Endosomal targeting BRO1-like domain-containing protein LENGTH=401	IPR004328 (BRO1 domain)	
Niben101Scf00177g08006.1	sp|P35685|RL7A_ORYSJ	*-*-	60S ribosomal protein L7a	IPR001921 (Ribosomal protein L7A/L8)	
Niben101Scf19214g00001.1	AT2G46300.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=252		
Niben101Scf00870g12004.1			Unknown protein		
Niben101Scf01749g04016.1	sp|Q9LHJ8|SAP5_ARATH	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	IPR000058 (Zinc finger, AN1-type)	GO:0008270 (zinc ion binding)
Niben101Scf00984g03008.1	ref|NP_001117567.1|	***-	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana] gb|AEE34747.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]		
Niben101Scf06793g07010.1	AT5G65590.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=316	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09005g01014.1	sp|Q8IWZ5|TRI42_HUMAN	--*-	Tripartite motif-containing protein 42		
Niben101Scf02541g08003.1	sp|Q8GWP3|COPT6_ARATH	****	Copper transporter 6	IPR007274 (Ctr copper transporter)	GO:0005375 (copper ion transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0035434 (copper ion transmembrane transport)
Niben101Scf05917g01004.1	sp|Q6L545|GID1_ORYSJ	***-	Gibberellin receptor GID1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf09596g01005.1	sp|Q3UJZ3|ARMC7_MOUSE	***-	Armadillo repeat-containing protein 7	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf08753g02039.1	sp|B1AI94|FTSH_UREP2	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR025653 (Peroxisome biogenesis factor 1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005778 (peroxisomal membrane), GO:0006625 (protein targeting to peroxisome), GO:0042623 (ATPase activity, coupled)
Niben101Scf09812g01018.1	sp|Q05B78|ZFY21_BOVIN	*-*-	Zinc finger FYVE domain-containing protein 21	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0046872 (metal ion binding)
Niben101Scf02074g00003.1	AT4G34860.1	*-*-	Plant neutral invertase family protein LENGTH=571	IPR024746 (Glycosyl hydrolase family 100)	GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf00492g02005.1			Unknown protein		
Niben101Scf02483g00008.1	sp|Q9D1D4|TMEDA_MOUSE	-**-	Transmembrane emp24 domain-containing protein 10	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf00170g05001.1	sp|Q8DS47|RPOC_STRMU	****	DNA-directed RNA polymerase subunit beta'	IPR015700 (DNA-directed RNA polymerase III subunit RPC1)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0032549 (ribonucleoside binding)
Niben101Scf08755g03003.1	sp|Q1RIM1|TOP1_RICBR	****	DNA topoisomerase 1	IPR000380 (DNA topoisomerase, type IA), IPR023405 (DNA topoisomerase, type IA, core domain), IPR023406 (DNA topoisomerase, type IA, active site), IPR025589 (Topoisomerase C-terminal repeat)	GO:0003677 (DNA binding), GO:0003916 (DNA topoisomerase activity), GO:0003917 (DNA topoisomerase type I activity), GO:0005694 (chromosome), GO:0006265 (DNA topological change)
Niben101Scf00448g18001.1	sp|P09789|GRP1_PETHY	--*-	Glycine-rich cell wall structural protein 1		
Niben101Scf00402g04010.1	sp|A2Y053|METK1_ORYSI	****	S-adenosylmethionine synthase 1	IPR002133 (S-adenosylmethionine synthetase)	GO:0004478 (methionine adenosyltransferase activity), GO:0005524 (ATP binding), GO:0006556 (S-adenosylmethionine biosynthetic process)
Niben101Scf01252g04010.1	AT2G27080.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=260		
Niben101Scf00825g02017.1			Unknown protein		
Niben101Scf01814g05011.1	AT3G50590.1	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=1614	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf16022g00011.1	AT4G22890.1	***-	PGR5-LIKE A LENGTH=324		
Niben101Scf07585g00038.1	AT3G19920.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=416		
Niben101Scf05206g01005.1	sp|Q5HYJ1|TECRL_HUMAN	****	Trans-2,3-enoyl-CoA reductase-like	IPR001104 (3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal)	GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
Niben101Scf08918g00011.1	AT3G08550.1	***-	elongation defective 1 protein / ELD1 protein LENGTH=533		
Niben101Scf03832g02022.1	sp|Q3E958|SHN3_ARATH	***-	Ethylene-responsive transcription factor SHINE 3		
Niben101Scf04198g01002.1	sp|P55038|GLTS_SYNY3	*-**	Ferredoxin-dependent glutamate synthase 2	IPR002489 (Glutamate synthase, alpha subunit, C-terminal), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0006537 (glutamate biosynthetic process), GO:0008152 (metabolic process), GO:0015930 (glutamate synthase activity), GO:0016491 (oxidoreductase activity), GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors), GO:0055114 (oxidation-reduction process)
Niben101Scf04956g00001.1	ref|WP_003492319.1|	***-	peptidase M16 [Cl [Clostridium sporogenes PA 3679]	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like), IPR013578 (Peptidase M16C associated)	GO:0003824 (catalytic activity), GO:0006508 (proteolysis), GO:0046872 (metal ion binding)
Niben101Scf02920g00015.1	ref|XP_007043499.1|	***-	Micronuclear linker histone polyprotein-like protein [Theobroma cacao] gb|EOX99330.1| Micronuclear linker histone polyprotein-like protein [Theobroma cacao]		
Niben101Scf02622g07005.1	sp|P34885|KPC1B_CAEEL	*-**	Protein kinase C-like 1B	IPR011009 (Protein kinase-like domain), IPR011993 (Pleckstrin homology-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01983g02011.1	sp|Q92RA4|MSRB1_RHIME	****	Peptide methionine sulfoxide reductase MsrB 1	IPR011057 (Mss4-like), IPR028427 (Peptide methionine sulfoxide reductase)	GO:0006979 (response to oxidative stress), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0030091 (protein repair), GO:0033743 (peptide-methionine (R)-S-oxide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf25430g00023.1	sp|Q84LG4|COPZ2_ARATH	*-*-	Coatomer subunit zeta-2		
Niben101Scf00417g00005.1	AT3G10040.1	*-*-	sequence-specific DNA binding transcription factors LENGTH=431		
Niben101Scf00586g01004.1	AT3G55605.1	****	Mitochondrial glycoprotein family protein LENGTH=258	IPR003428 (Mitochondrial glycoprotein)	GO:0005759 (mitochondrial matrix)
Niben101Scf12084g01007.1	AT5G64816.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=130		
Niben101Scf01166g14023.1	sp|Q5U4K5|TM41B_XENLA	***-	Transmembrane protein 41B		
Niben101Scf01017g01002.1	AT3G52440.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=247	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02659g02013.1	emb|CDY39912.1|	***-	BnaA09g14940D [Brassica napus]		
Niben101Scf11790g01007.1	gb|AAC72541.1|	***-	male sterility MS5 [Arabidopsis thaliana]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06142g00001.1			Unknown protein		
Niben101Scf00671g00008.1	sp|O48837|LRKS2_ARATH	--*-	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0005524 (ATP binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07381g00001.1	sp|P16664|RGP1_YEAST	--*-	Guanine nucleotide exchange factor subunit RGP1		
Niben101Scf04377g03006.1			Unknown protein		
Niben101Scf08478g00016.1	sp|Q6IQ97|RBM41_DANRE	--**	RNA-binding protein 4.1	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR013783 (Immunoglobulin-like fold), IPR014756 (Immunoglobulin E-set)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf05989g04008.1	gb|KEH17480.1|	--*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf10124g04008.1	sp|Q5ZLN0|LRC40_CHICK	--*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf19133g02012.1	sp|Q9YGP5|RBPMS_XENLA	*-**	RNA-binding protein with multiple splicing	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR024888 (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'')	GO:0000166 (nucleotide binding), GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0017069 (snRNA binding)
Niben101Scf09030g01004.1			Unknown protein		
Niben101Scf08226g00004.1	sp|A8GJ06|SPEE_SERP5	***-	Polyamine aminopropyl transferase	IPR001045 (Spermidine/spermine synthases family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase), IPR030373 (Polyamine biosynthesis domain, conserved site)	GO:0003824 (catalytic activity)
Niben101Ctg06101g00002.1	sp|Q86I40|OMT4_DICDI	*-**	O-methyltransferase 4	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity)
Niben101Scf07247g05009.1	sp|Q8L9P8|RLF33_ARATH	***-	Protein RALF-like 33	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf00110g05013.1	sp|P56601|PPOX_MYXXA	****	Protoporphyrinogen oxidase	IPR004572 (Protoporphyrinogen oxidase), IPR016040 (NAD(P)-binding domain), IPR027418 (Protoporphyrinogen oxidase, C-terminal domain)	GO:0004729 (oxygen-dependent protoporphyrinogen oxidase activity), GO:0006779 (porphyrin-containing compound biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01487g04020.1	sp|Q8VYE4|PTR12_ARATH	***-	Protein NRT1/ PTR FAMILY 4.5	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00861g02001.1	sp|P10978|POLX_TOBAC	--*-	Retrovirus-related Pol polyprotein from transposon TNT 1-94		
Niben101Scf13167g02003.1	sp|F4KAB8|MCM6_ARATH	****	DNA replication licensing factor MCM6	IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR004039 (Rubredoxin-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027925 (MCM N-terminal domain)	GO:0003677 (DNA binding), GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006270 (DNA replication initiation), GO:0042555 (MCM complex)
Niben101Scf09101g02003.1	sp|P14749|AGAL_CYATE	***-	Alpha-galactosidase	IPR000111 (Glycoside hydrolase, clan GH-D)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05811g02022.1	sp|P07436|TBB1_PHYPO	*-*-	Tubulin beta-1 chain	IPR000217 (Tubulin), IPR009489 (PAR1), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf02112g00008.1	sp|Q07488|BCB1_ARATH	*-*-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf08065g01002.1	AT1G76500.1	*-*-	Predicted AT-hook DNA-binding family protein LENGTH=302	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf01927g01001.1	ref|XP_007013046.1|	***-	Histidine ph [Theobroma cacao]		
Niben101Scf30252g01011.1	AT1G24300.1	*-*-	GYF domain-containing protein LENGTH=1495	IPR003169 (GYF)	GO:0005515 (protein binding)
Niben101Scf07034g06018.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf04489g00023.1	AT1G79900.1	***-	Mitochondrial substrate carrier family protein LENGTH=296	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf05431g00002.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03113g01012.1	sp|Q93ZB9|FACR3_ARATH	****	Fatty acyl-CoA reductase 3	IPR016040 (NAD(P)-binding domain), IPR026055 (Fatty acyl-CoA reductase)	GO:0080019 (fatty-acyl-CoA reductase (alcohol-forming) activity)
Niben101Scf01056g02003.1	sp|Q980V1|PTH_SULSO	*-**	Peptidyl-tRNA hydrolase	IPR002833 (Peptidyl-tRNA hydrolase, PTH2), IPR023476 (Peptidyl-tRNA hydrolase II domain)	GO:0004045 (aminoacyl-tRNA hydrolase activity)
Niben101Scf16571g00005.1			Unknown protein		
Niben101Scf03220g00011.1	sp|P04798|CP1A1_HUMAN	***-	Cytochrome P450 1A1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07841g02006.1	sp|Q5CB03|B3GA1_CANFA	*-**	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1	IPR005027 (Glycosyl transferase, family 43), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0015018 (galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity), GO:0016020 (membrane)
Niben101Scf12628g02006.1	sp|O82804|ELF3_ARATH	***-	Protein EARLY FLOWERING 3		
Niben101Scf01956g05006.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05467g00022.1	gb|AES99821.2|	****	RNA polymerase II transcription factor SIII (elongin) subunit A [Medicago truncatula]	IPR010684 (RNA polymerase II transcription factor SIII, subunit A)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016021 (integral component of membrane)
Niben101Scf03012g03019.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01451g04012.1	sp|O49621|MLO1_ARATH	*-*-	MLO-like protein 1	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf03961g00008.1	sp|P04782|CB24_PETSP	***-	Chlorophyll a-b binding protein 25, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf03944g02014.1	sp|Q56254|RPOM_THECE	****	DNA-directed RNA polymerase subunit M	IPR001222 (Zinc finger, TFIIS-type), IPR001529 (DNA-directed RNA polymerase, M/15kDa subunit), IPR012164 (DNA-directed RNA polymerase, subunit C11/M/9)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf01166g14020.1	sp|I1N462|SBT1_SOYBN	--*-	Subtilisin-like protease	IPR010259 (Peptidase S8 propeptide/proteinase inhibitor I9)	
Niben101Scf01066g02008.1	ref|NP_001054244.2|	*-*-	[Oryza sativa Japonica Group] emb|CAE03242.2| OSJNBa0018M05.17 [Oryza sativa Japonica Group] dbj|BAF16158.2| [Oryza sativa Japonica Group]		
Niben101Scf05895g00006.1	sp|B2GEV4|RS6_LACF3	-**-	30S ribosomal protein S6	IPR000529 (Ribosomal protein S6), IPR014717 (Translation elongation factor EF1B/ribosomal protein S6)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf03961g00004.1	sp|P27495|CB24_TOBAC	***-	Chlorophyll a-b binding protein 40, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf05166g06006.1	AT1G18870.1	*-**	isochorismate synthase 2 LENGTH=562	IPR004561 (Isochorismate synthase)	GO:0008909 (isochorismate synthase activity), GO:0009058 (biosynthetic process)
Niben101Scf07325g00004.1	sp|Q9FNP8|RS193_ARATH	***-	40S ribosomal protein S19-3	IPR001266 (Ribosomal protein S19e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08328g00009.1	sp|P0C0S4|H2AZ_BOVIN	***-	Histone H2A.Z	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf01483g00004.1	AT1G70170.1	****	matrix metalloproteinase LENGTH=378	IPR021190 (Peptidase M10A), IPR024079 (Metallopeptidase, catalytic domain)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity), GO:0008270 (zinc ion binding), GO:0031012 (extracellular matrix)
Niben101Scf00366g09002.1	emb|CDY27601.1|	*-*-	BnaA09g28060D [Brassica napus]	IPR012458 (Protein of unknown function DUF1664)	
Niben101Scf11515g01005.1	sp|Q9SJY5|PUMP5_ARATH	*-*-	Mitochondrial uncoupling protein 5	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf06482g00018.1	sp|Q8VZI8|FTSHA_ARATH	*-*-	ATP-dependent zinc metalloprotease FTSH 10, mitochondrial		
Niben101Scf00854g10009.1	sp|Q8UC74|ATPA_AGRT5	*-**	ATP synthase subunit alpha	IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf01294g05004.1	tpg|DAA49421.1|	***-	TPA: hypothetical protein ZEAMMB73_208487 [Zea mays]	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf12941g00006.1	sp|C9REN7|PSB_METVM	****	Proteasome subunit beta	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf09205g00009.1	gb|ABD65018.1|	*-*-	Lil3 protein, putative [Brassica oleracea]	IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf01669g04022.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02422g01010.1	sp|Q40066|SPZX_HORVU	*-*-	Serpin-ZX	IPR000215 (Serpin family), IPR023795 (Serpin, conserved site), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf00538g05001.1	ref|WP_027589248.1|	****	carbon-nitrogen hydrolase [Pseudomonas sp. RL]	IPR017755 (N-carbamoylputrescine amidase)	GO:0006596 (polyamine biosynthetic process), GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds), GO:0050126 (N-carbamoylputrescine amidase activity)
Niben101Scf04627g05025.1	sp|O80822|PER25_ARATH	****	Peroxidase 25	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06094g08010.1	sp|Q8RYL0|LCB2C_ORYSJ	*-*-	Long chain base biosynthesis protein 2c	IPR008889 (VQ)	
Niben101Scf01063g07013.1	AT5G17020.1	***-	exportin 1A LENGTH=1075	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0008536 (Ran GTPase binding)
Niben101Scf00869g06008.1	sp|Q84TI3|OBE4_ARATH	***-	Protein OBERON 4	IPR004082 (Protein OBERON)	
Niben101Scf01006g06009.1	AT4G39470.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=341	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04287g02001.1	sp|Q0WNR2|BH090_ARATH	***-	Transcription factor bHLH90	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf06770g00001.1	sp|Q0ZJ20|PSAA_VITVI	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf02734g01018.1	sp|A2BZ43|CLPX_PROM5	--*-	ATP-dependent Clp protease ATP-binding subunit ClpX		
Niben101Scf02356g00012.1	AT3G04620.1	****	Alba DNA/RNA-binding protein LENGTH=164	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Scf12159g05018.1	gb|EMT00230.1|	*-*-	Disease resistance protein RGA2 [Aegilops tauschii]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf02894g00005.1	sp|A6L1V8|LEUC_BACV8	*-*-	3-isopropylmalate dehydratase large subunit	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf01115g02005.1	sp|Q9M9W1|RL222_ARATH	***-	60S ribosomal protein L22-2	IPR002671 (Ribosomal protein L22e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf20039g00001.1	sp|Q54YW1|ELMOA_DICDI	*-*-	ELMO domain-containing protein A	IPR006816 (Engulfment/cell motility, ELMO)	GO:0005856 (cytoskeleton), GO:0006909 (phagocytosis)
Niben101Scf18384g00028.1	AT3G50940.1	*-*-	P-loop containing nucleoside triphosphate hydrolases superfamily protein LENGTH=451	IPR025753 (AAA-type ATPase, N-terminal domain)	
Niben101Scf00568g04003.1	sp|A0ZZ25|RPOC2_GOSBA	*-**	DNA-directed RNA polymerase subunit beta''	IPR007083 (RNA polymerase Rpb1, domain 4)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf00058g09013.1	gb|KEH43885.1|	****	photosystem II Pbs27 protein [Medicago truncatula]	IPR025585 (Photosystem II Pbs27)	GO:0010207 (photosystem II assembly)
Niben101Scf12308g00014.1	sp|Q4X0Z5|BRO1_ASPFU	***-	Vacuolar protein-sorting protein bro1	IPR004328 (BRO1 domain), IPR025304 (ALIX V-shaped domain)	GO:0005515 (protein binding)
Niben101Scf00628g00006.1	sp|P05499|ATP6_TOBAC	****	ATP synthase subunit a	IPR000568 (ATPase, F0 complex, subunit A)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf00410g01013.1	AT4G23895.1	***-	Pleckstrin homology (PH) domain-containing protein LENGTH=247	IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf07722g01003.1	sp|P83876|TXN4A_HUMAN	***-	Thioredoxin-like protein 4A	IPR004123 (mRNA splicing factor, thioredoxin-like U5 snRNP), IPR012336 (Thioredoxin-like fold)	GO:0005681 (spliceosomal complex), GO:0007067 (mitotic nuclear division)
Niben101Scf03702g04006.1	sp|Q63425|PRAX_RAT	*-*-	Periaxin		
Niben101Scf03766g02001.1	sp|P92942|CLCB_ARATH	****	Chloride channel protein CLC-b	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf00536g04007.1	AT1G11545.1	****	xyloglucan endotransglucosylase/hydrolase 8 LENGTH=305	IPR008264 (Beta-glucanase), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf00870g17013.1	emb|CDY11155.1|	***-	BnaC06g24070D [Brassica napus]		
Niben101Scf09554g00008.1	sp|Q96558|UGDH1_SOYBN	****	UDP-glucose 6-dehydrogenase 1	IPR017476 (UDP-glucose/GDP-mannose dehydrogenase)	GO:0003979 (UDP-glucose 6-dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07925g00028.1	ref|YP_006291826.1|	*-*-	orf42 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81180.1| orf42 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf01421g00010.1	AT5G19860.1	***-	Protein of unknown function, DUF538 LENGTH=181	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf09885g01012.1	sp|Q2QN26|CCA32_ORYSJ	*-*-	Cyclin-A3-2	IPR013763 (Cyclin-like)	
Niben101Scf00212g01001.1	sp|O24160|TGA21_TOBAC	*-**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03600g00019.1	emb|CDX91922.1|	***-	BnaC03g32240D [Brassica napus]		
Niben101Scf06912g01020.1	sp|Q6BK66|CCS1_DEBHA	****	Superoxide dismutase 1 copper chaperone	IPR001424 (Superoxide dismutase, copper/zinc binding domain), IPR006121 (Heavy metal-associated domain, HMA)	GO:0006801 (superoxide metabolic process), GO:0030001 (metal ion transport), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00428g11018.1	sp|Q9Z1K8|YLAT1_MOUSE	****	Y+L amino acid transporter 1	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf04813g01008.1	emb|CDY51013.1|	--*-	BnaC04g55260D [Brassica napus]		
Niben101Scf18348g00017.1	ref|XP_003597021.1|	****	APO protein [Medicago truncatula] gb|AES67272.1| APO RNA-binding protein [Medicago truncatula]	IPR023342 (APO domain)	GO:0003723 (RNA binding)
Niben101Scf01154g19015.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016187 (C-type lectin fold)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07253g01009.1	sp|Q9SLM6|GSTF3_ARATH	***-	Glutathione S-transferase F3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf01727g08013.1			Unknown protein		
Niben101Scf10232g03002.1	gb|AFI47463.1|	****	invertase inhibitor [Solanum tuberosum]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf14076g00012.1	dbj|BAF52858.1|	***-	repressor of silencing 3 [Nicotiana tabacum]	IPR011257 (DNA glycosylase), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal), IPR028924 (Permuted single zf-CXXC unit), IPR028925 (Demeter, RRM-fold domain)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair)
Niben101Scf00607g03003.1	sp|Q6AY85|ALG14_RAT	***-	UDP-N-acetylglucosamine transferase subunit ALG14 homolog	IPR013969 (Oligosaccharide biosynthesis protein Alg14-like)	
Niben101Scf04505g03001.1	AT1G33110.1	***-	MATE efflux family protein LENGTH=494	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03492g00010.1	sp|O65351|SUBL_ARATH	***-	Subtilisin-like protease	IPR009020 (Proteinase inhibitor, propeptide), IPR010435 (Peptidase S8A, DUF1034 C-terminal), IPR015500 (Peptidase S8, subtilisin-related), IPR023827 (Peptidase S8, subtilisin,  Asp-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0005618 (cell wall), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf03651g00002.1	AT5G03960.1	***-	IQ-domain 12 LENGTH=403	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf01008g03019.1	gb|AAY43791.1|	--*-	E6-2 [Gossypium hirsutum]		
Niben101Scf09372g04007.1	AT5G16040.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=396	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf01305g01004.1	sp|Q9JI90|RNF14_MOUSE	***-	E3 ubiquitin-protein ligase RNF14	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08015g02002.1	dbj|BAO50886.1|	*-*-	cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]		
Niben101Scf01543g06028.1	sp|Q9FGL9|PTBP2_ARATH	****	Polypyrimidine tract-binding protein homolog 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04764g07009.1	ref|WP_029326331.1|	***-	globin [Bacillus sp. m3-13]	IPR001486 (Globin, truncated bacterial-like), IPR009050 (Globin-like)	GO:0005506 (iron ion binding), GO:0015671 (oxygen transport), GO:0019825 (oxygen binding), GO:0020037 (heme binding)
Niben101Scf02929g04035.1	gb|AIE42546.1|	*-*-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf07593g02005.1	emb|CDX72341.1|	***-	BnaC07g43630D [Brassica napus]		
Niben101Scf05269g02002.1	sp|Q9FRI5|PPR57_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05764g03004.1	sp|O93530|WRN_XENLA	--*-	Werner syndrome ATP-dependent helicase homolog	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf01371g02008.1	sp|Q8WVZ9|KBTB7_HUMAN	--*-	Kelch repeat and BTB domain-containing protein 7	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf04748g03008.1	AT2G24650.1	*-**	DNA binding;DNA binding;sequence-specific DNA binding transcription factors LENGTH=1045	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf09353g06001.1			Unknown protein		
Niben101Scf03456g00005.1	sp|Q6NXD8|DEN5B_DANRE	*-*-	DENN domain-containing protein 5B	IPR001194 (DENN domain), IPR005112 (dDENN domain), IPR005113 (uDENN domain)	
Niben101Scf00214g03010.1	AT4G21490.1	***-	NAD(P)H dehydrogenase B3 LENGTH=580	IPR011992 (EF-hand domain pair), IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0005509 (calcium ion binding), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05201g05004.1	sp|Q6NLB1|FB118_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf15870g00001.1	sp|Q9Y169|EXT2_DROME	*-*-	Exostosin-2	IPR011040 (Sialidases), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0006024 (glycosaminoglycan biosynthetic process), GO:0015012 (heparan sulfate proteoglycan biosynthetic process), GO:0016021 (integral component of membrane)
Niben101Ctg10403g00003.1	ref|XP_007037137.1|	***-	Ankyrin repeat domain-containing protein 50 isoform 2 [Theobroma cacao] gb|EOY21638.1| Ankyrin repeat domain-containing protein 50 isoform 2 [Theobroma cacao]		
Niben101Scf15962g00019.1	AT4G16110.1	*-*-	response regulator 2 LENGTH=664	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07091g01017.1	sp|P93231|VPS41_SOLLC	*-*-	Vacuolar protein sorting-associated protein 41 homolog		
Niben101Scf26775g00011.1			Unknown protein		
Niben101Scf01664g01002.1	AT4G35000.1	****	ascorbate peroxidase 3 LENGTH=287	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10947g01003.1	sp|P22928|CHSJ_PETHY	*-*-	Chalcone synthase J	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0009058 (biosynthetic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf07036g00001.1	emb|CDX73027.1|	***-	BnaC06g34750D [Brassica napus]		
Niben101Scf02798g07009.1	sp|B2V630|AROA_SULSY	--*-	3-phosphoshikimate 1-carboxyvinyltransferase		
Niben101Scf06208g00005.1	gb|KEH17617.1|	*-*-	structural constituent of cell wall protein, putative [Medicago truncatula]	IPR010820 (Protein of unknown function DUF1421)	
Niben101Scf12673g00004.1	AT2G20990.3	***-	synaptotagmin A LENGTH=579	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00262g01003.1	sp|Q8VYR0|MCU5_ARATH	*-*-	Calcium uniporter protein 5, mitochondrial	IPR006769 (Coiled-coil domain containing protein 109, C-terminal)	
Niben101Scf07438g06002.1	sp|A4QN59|DPH2_DANRE	****	Diphthamide biosynthesis protein 2	IPR002728 (Diphthamide synthesis, DPH1/DPH2)	GO:0005737 (cytoplasm), GO:0017183 (peptidyl-diphthamide biosynthetic process from peptidyl-histidine)
Niben101Scf01278g10002.1	ref|XP_007035408.1|	***-	PH-response transcription factor pacC/RIM101 isoform 1 [Theobroma cacao] gb|EOY06334.1| PH-response transcription factor pacC/RIM101 isoform 1 [Theobroma cacao]	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf08002g01012.1	sp|B7LPR5|YQGE_ESCF3	-**-	UPF0301 protein YqgE	IPR003774 (Protein of unknown function UPF0301)	
Niben101Scf15435g00006.1	sp|Q4UZX0|NPD_XANC8	****	NAD-dependent protein deacetylase	IPR003000 (Sirtuin family), IPR026591 (Sirtuin family, catalytic core small domain), IPR029035 (DHS-like NAD/FAD-binding domain)	GO:0070403 (NAD+ binding)
Niben101Scf02027g01022.1	sp|Q9BXT4|TDRD1_HUMAN	*-*-	Tudor domain-containing protein 1	IPR016685 (RNA-induced silencing complex, nuclease component Tudor-SN)	GO:0016442 (RISC complex), GO:0031047 (gene silencing by RNA)
Niben101Scf00971g00018.1	emb|CBW30177.1|	--*-	Conserved hypothetical protein [Musa balbisiana]		
Niben101Scf09979g00001.1	ref|XP_003625024.1|	*-*-	Protein WAX2 [Medicago truncatula] gb|ABN07985.1| Sterol desaturase [Medicago truncatula] gb|AES81242.1| fatty acid hydroxylase superfamily protein [Medicago truncatula]	IPR021940 (Uncharacterised domain Wax2, C-terminal)	
Niben101Scf16015g01016.1			Unknown protein		
Niben101Scf14436g02003.1	AT3G56380.1	***-	response regulator 17 LENGTH=153	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf11621g01017.1	AT4G39130.1	*-*-	Dehydrin family protein LENGTH=151	IPR000167 (Dehydrin)	GO:0006950 (response to stress), GO:0009415 (response to water)
Niben101Scf00508g10015.1	sp|Q8VD65|PI3R4_MOUSE	*-*-	Phosphoinositide 3-kinase regulatory subunit 4	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf05848g03006.1	sp|Q588Z1|PVADH_SPHS1	***-	Polyvinylalcohol dehydrogenase	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily)	
Niben101Scf00130g05011.1			Unknown protein		
Niben101Scf01477g00017.1			Unknown protein		
Niben101Scf06158g03002.1	emb|CDY17236.1|	***-	BnaA05g09520D [Brassica napus]	IPR007608 (Senescence regulator S40)	
Niben101Scf06388g04001.1	sp|Q9CAA4|BIM2_ARATH	***-	Transcription factor BIM2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03832g02020.1	sp|A7ZXD4|AES_ECOHS	***-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf01706g00006.1	AT4G32790.1	*-*-	Exostosin family protein LENGTH=593	IPR004263 (Exostosin-like)	
Niben101Scf05582g03004.1	sp|P49098|CYB5_TOBAC	***-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf01852g04013.1	ref|NP_001279484.1|	****	CCHC-type zinc finger, nucleic acid binding protein [Callorhinchus milii] gb|AFM89464.1| cellular nucleic acid-binding protein-like protein [Callorhinchus milii]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02994g03006.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf14009g01004.1	emb|CDY19313.1|	***-	BnaC05g08220D [Brassica napus]		
Niben101Scf05575g00001.1	sp|Q9CQU8|IMP1L_MOUSE	****	Mitochondrial inner membrane protease subunit 1	IPR000223 (Peptidase S26A, signal peptidase I), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006508 (proteolysis), GO:0006627 (protein processing involved in protein targeting to mitochondrion), GO:0008233 (peptidase activity), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane)
Niben101Scf14883g00007.1	AT5G50780.1	*-*-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=819	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf02816g08005.1	sp|O23474|PER40_ARATH	*-**	Peroxidase 40	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04804g00002.1	sp|Q60720|CY561_MOUSE	***-	Cytochrome b561	IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf00679g05001.1	sp|Q43735|PER27_ARATH	****	Peroxidase 27	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03046g02022.1	AT5G36670.1	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=1193	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05767g00001.1	sp|Q9CP21|CCA_PASMU	*-*-	Multifunctional CCA protein	IPR002646 (Poly A polymerase, head domain)	GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf05928g03010.1	sp|P69039|IF5A1_NICPL	****	Eukaryotic translation initiation factor 5A-1	IPR001884 (Translation elongation factor IF5A)	GO:0003723 (RNA binding), GO:0003746 (translation elongation factor activity), GO:0006452 (translational frameshifting), GO:0043022 (ribosome binding), GO:0045901 (positive regulation of translational elongation), GO:0045905 (positive regulation of translational termination)
Niben101Scf04456g01013.1	AT3G11100.1	****	sequence-specific DNA binding transcription factors LENGTH=249	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf04627g02003.1	ref|XP_003611587.1|	****	Mitochondrial outer membrane protein porin [Medicago truncatula] gb|AES94545.1| porin/voltage-dependent anion-selective channel protein [Medicago truncatula] gb|AFK34790.1| unknown [Medicago truncatula]	IPR023614 (Porin domain), IPR027246 (Eukaryotic porin/Tom40)	GO:0005741 (mitochondrial outer membrane), GO:0055085 (transmembrane transport)
Niben101Scf00090g11001.1	emb|CDY71261.1|	*-*-	BnaCnng72080D, partial [Brassica napus]		
Niben101Scf02274g01003.1	sp|P38929|ATC2_YEAST	*-*-	Calcium-transporting ATPase 2	IPR006068 (Cation-transporting P-type ATPase, C-terminal), IPR023298 (P-type ATPase,  transmembrane domain)	
Niben101Scf02293g00018.1	sp|Q9LTT8|VCS_ARATH	***-	Enhancer of mRNA-decapping protein 4		
Niben101Scf04327g02023.1	sp|Q9SS03|DIR21_ARATH	***-	Dirigent protein 21	IPR004265 (Plant disease resistance response protein)	
Niben101Scf01372g10007.1	gb|ABA98510.1|	*-*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf07516g01001.1	gb|AAD24658.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf04528g01010.1	sp|Q13042|CDC16_HUMAN	***-	Cell division cycle protein 16 homolog	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01005g05014.1			Unknown protein		
Niben101Scf02771g03013.1	sp|O75179|ANR17_HUMAN	*-*-	Ankyrin repeat domain-containing protein 17	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01250g05002.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00085g05010.1	sp|Q9XF38|PROF_PYRCO	***-	Profilin	IPR005455 (Profilin)	
Niben101Scf08308g04020.1	sp|P0A9M3|HPRT_ECOL6	*-*-	Hypoxanthine phosphoribosyltransferase	IPR029057 (Phosphoribosyltransferase-like)	
Niben101Scf04444g02002.1	AT3G13110.1	*-*-	serine acetyltransferase 2;2 LENGTH=391	IPR011004 (Trimeric LpxA-like)	GO:0016740 (transferase activity)
Niben101Scf04117g09006.1	sp|Q75LU8|CNBL3_ORYSJ	*-*-	Calcineurin B-like protein 3	IPR011992 (EF-hand domain pair)	
Niben101Scf02190g01011.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00398g07010.1	sp|O08730|GLYG_RAT	--*-	Glycogenin-1	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf02818g01017.1	sp|P54001|P4HA1_RAT	*-*-	Prolyl 4-hydroxylase subunit alpha-1	IPR003582 (ShKT domain), IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02073g00005.1	ref|WP_020769919.1|	***-	PF09835 family protein [Lept [Leptospira sp. B5-022]	IPR018639 (Domain of unknown function DUF2062)	
Niben101Ctg09972g00002.1			Unknown protein		
Niben101Scf04375g11004.1	ref|YP_006291827.1|	*-*-	orf43 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81181.1| orf43 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf01089g01017.1	sp|Q5JTN6|WDR38_HUMAN	***-	WD repeat-containing protein 38	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf00646g03005.1	gb|AEK83271.1|	*-*-	At3G54630-like protein [Capsella grandiflora]	IPR005550 (Kinetochore protein Ndc80)	
Niben101Scf07533g02013.1	sp|Q67ZI9|GDL48_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf10036g04006.1	AT1G15240.2	***-	Phox-associated domain;Phox-like;Sorting nexin, C-terminal LENGTH=1020	IPR001683 (Phox homologous domain), IPR003114 (Phox-associated domain), IPR013937 (Sorting nexin, C-terminal)	GO:0035091 (phosphatidylinositol binding)
Niben101Scf01791g00001.1	sp|A1JPA1|MDTK_YERE8	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf09962g00004.1	gb|AFI44275.1|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Silene vulgaris]		
Niben101Scf02929g05032.1			Unknown protein		
Niben101Scf04731g11007.1			Unknown protein		
Niben101Scf10940g04022.1	sp|Q9MAX3|SUT12_ARATH	--*-	Sulfate transporter 1.2		
Niben101Scf21123g00001.1	sp|Q6RZZ9|KIF13_DICDI	--*-	Kinesin-related protein 13		
Niben101Scf04629g02008.1	gb|AES59573.2|	*-*-	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain protein [Medicago truncatula]	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf03164g07002.1	emb|CDX77401.1|	*-*-	BnaA07g05390D [Brassica napus]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf00104g02014.1	sp|P33077|IAA4_ARATH	***-	Auxin-responsive protein IAA4	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf11936g01020.1	sp|Q08435|PMA1_NICPL	****	Plasma membrane ATPase 1	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane)
Niben101Scf01635g05004.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08979g00015.1	AT4G34760.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=107	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01683g03013.1	sp|P20338|RAB4A_HUMAN	*-*-	Ras-related protein Rab-4A	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Ctg05133g00002.1	sp|A9WFT9|PDXS_CHLAA	****	Pyridoxal biosynthesis lyase PdxS	IPR001852 (Pyridoxine biosynthesis protein), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0042823 (pyridoxal phosphate biosynthetic process)
Niben101Scf00113g05009.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00080g04007.1	AT4G31540.1	****	exocyst subunit exo70 family protein G1 LENGTH=687	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf02881g00004.1	sp|Q8HXM1|CSTF2_BOVIN	--*-	Cleavage stimulation factor subunit 2	IPR025742 (Cleavage stimulation factor subunit 2, hinge domain), IPR026896 (Transcription termination and cleavage factor C-terminal domain)	
Niben101Scf00858g04011.1	sp|P49104|RAB2B_MAIZE	*-*-	Ras-related protein Rab-2-B	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf00557g03002.1	AT2G31960.1	*-**	glucan synthase-like 3 LENGTH=1950	IPR023175 (Vacuolar protein sorting-associate protein Vta1/Callose synthase, N-terminal domain), IPR026899 (1,3-beta-glucan synthase subunit FKS1-like, domain-1), IPR026953 (Callose synthase)	GO:0003843 (1,3-beta-D-glucan synthase activity)
Niben101Scf00503g08015.1	sp|Q8L7R2|KHSE_ARATH	*-*-	Homoserine kinase	IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0005524 (ATP binding)
Niben101Scf03786g04014.1	sp|Q9C519|WRKY6_ARATH	****	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02805g05007.1	AT2G01190.1	*-*-	Octicosapeptide/Phox/Bem1p family protein LENGTH=720	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf02549g02006.1	ref|XP_002519549.1|	*-**	nucleic acid binding protein, putative [Ricinus communis] gb|EEF42963.1| nucleic acid binding protein, putative [Ricinus communis]	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf02778g03007.1	sp|F4I507|MYO3_ARATH	*-*-	Myosin-3		
Niben101Scf08293g00001.1	sp|P47199|QOR_MOUSE	****	Quinone oxidoreductase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07236g00007.1	sp|O42993|FKBP_SCHPO	***-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf06155g01012.1	sp|Q9LQR0|LBD1_ARATH	***-	LOB domain-containing protein 1	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf00479g01016.1	sp|Q10281|GBLP_SCHPO	--**	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02215g03001.1			Unknown protein		
Niben101Scf13099g00013.1	sp|B1YC32|RL13_PYRNV	****	50S ribosomal protein L13	IPR005822 (Ribosomal protein L13), IPR023563 (Ribosomal protein L13, conserved site), IPR023564 (Ribosomal protein L13 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf01616g07020.1	sp|O04504|PPR27_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002625 (Smr protein/MutS2 C-terminal), IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf09310g01003.1	AT3G13460.1	***-	evolutionarily conserved C-terminal region 2 LENGTH=667	IPR007275 (YTH domain)	
Niben101Scf09604g00009.1	sp|Q9SV21|COPB1_ARATH	***-	Coatomer subunit beta-1	IPR016460 (Coatomer beta subunit (COPB1)), IPR029446 (Coatomer beta subunit, appendage platform domain)	GO:0005198 (structural molecule activity), GO:0005488 (binding), GO:0005737 (cytoplasm), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030126 (COPI vesicle coat)
Niben101Scf11566g00007.1	gb|KEH24348.1|	--*-	sister-chromatide cohesion protein [Medicago truncatula]		
Niben101Scf09071g00011.1	sp|Q9SK66|NDUA9_ARATH	*-*-	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	IPR016040 (NAD(P)-binding domain)	
Niben101Scf00626g02003.1	AT4G00730.1	*-**	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=802	IPR002913 (START domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf08391g03023.1	sp|Q07878|VPS13_YEAST	--*-	Vacuolar protein sorting-associated protein 13	IPR026847 (Vacuolar protein sorting-associated protein 13), IPR026854 (Vacuolar protein sorting-associated protein 13A N-terminal domain)	
Niben101Scf05412g01004.1	sp|O04209|CLC2_ARATH	*-**	Clathrin light chain 2	IPR000996 (Clathrin light chain)	GO:0005198 (structural molecule activity), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030130 (clathrin coat of trans-Golgi network vesicle), GO:0030132 (clathrin coat of coated pit)
Niben101Scf02221g00009.1	AT3G08510.1	****	phospholipase C 2 LENGTH=581	IPR001192 (Phosphoinositide phospholipase C family), IPR011992 (EF-hand domain pair)	GO:0004435 (phosphatidylinositol phospholipase C activity), GO:0005515 (protein binding), GO:0006629 (lipid metabolic process), GO:0007165 (signal transduction), GO:0008081 (phosphoric diester hydrolase activity), GO:0035556 (intracellular signal transduction)
Niben101Scf04561g00005.1	sp|P10708|CB12_SOLLC	*-*-	Chlorophyll a-b binding protein 7, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf00091g01023.1	sp|A8EZZ7|NUOI_RICCK	****	NADH-quinone oxidoreductase subunit I	IPR010226 (NADH-quinone oxidoreductase, chain I), IPR017896 (4Fe-4S ferredoxin-type, iron-sulphur binding domain)	GO:0016020 (membrane), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg14609g00002.1	sp|P80457|XDH_BOVIN	*-*-	Xanthine dehydrogenase/oxidase	IPR008274 (Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05797g00004.1	sp|Q94AS5|ICME_ARATH	*-*-	Isoprenylcysteine alpha-carbonyl methylesterase ICME	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07105g01007.1			Unknown protein		
Niben101Scf02300g00024.1	ref|NP_001060647.1|	*-*-	product [Oryza sativa Japonica Group]	IPR021480 (Protein of unknown function DUF3133)	
Niben101Scf02972g02004.1	AT5G53440.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). LENGTH=1181		
Niben101Scf11751g01013.1	sp|Q9C835|CP21D_ARATH	*-*-	Peptidyl-prolyl cis-trans isomerase CYP21-4	IPR029000 (Cyclophilin-like domain)	
Niben101Scf01310g04012.1	sp|Q5BIY5|RN145_XENLA	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05367g01012.1	AT4G34660.1	***-	SH3 domain-containing protein LENGTH=368	IPR001452 (SH3 domain), IPR027267 (Arfaptin homology (AH) domain/BAR domain)	GO:0005515 (protein binding), GO:0005737 (cytoplasm)
Niben101Scf02565g03002.1	AT4G01070.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02278g01001.1	sp|Q3V096|ANR42_MOUSE	*-*-	Ankyrin repeat domain-containing protein 42	IPR000641 (CbxX/CfqX), IPR020683 (Ankyrin repeat-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf02420g07005.1	AT4G25410.1	****	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=230	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00528g01006.1	sp|Q9ZR08|Y4230_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like)	GO:0048544 (recognition of pollen)
Niben101Scf07564g01013.1	ref|NP_001067921.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf05392g01018.1	sp|Q7RA60|ENO_PLAYO	***-	Enolase	IPR000941 (Enolase), IPR029017 (Enolase N-terminal domain-like), IPR029065 (Enolase C-terminal domain-like)	GO:0000015 (phosphopyruvate hydratase complex), GO:0000287 (magnesium ion binding), GO:0004634 (phosphopyruvate hydratase activity), GO:0006096 (glycolytic process)
Niben101Scf04240g00006.1	AT5G66690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=481	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05369g00006.1	sp|Q9CAR3|KINGL_ARATH	***-	SNF1-related protein kinase regulatory subunit gamma-1-like	IPR000644 (CBS domain)	
Niben101Scf04024g00020.1	AT1G17980.1	****	poly(A) polymerase 1 LENGTH=713	IPR014492 (Poly(A) polymerase)	GO:0003723 (RNA binding), GO:0004652 (polynucleotide adenylyltransferase activity), GO:0005634 (nucleus), GO:0016779 (nucleotidyltransferase activity), GO:0031123 (RNA 3'-end processing), GO:0043631 (RNA polyadenylation)
Niben101Scf01328g00006.1	sp|Q3ZBC0|RPAB4_BOVIN	****	DNA-directed RNA polymerases I, II, and III subunit RPABC4	IPR006591 (RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4), IPR029040 (RNA polymerase subunit RPABC4/transcription elongation factor Spt4)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf03631g01001.1	AT1G76310.1	****	CYCLIN B2;4 LENGTH=431	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf03954g00017.1	sp|A1CFB3|ATG26_ASPCL	*-*-	Sterol 3-beta-glucosyltransferase	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03777g00006.1	sp|Q9M2F1|RS272_ARATH	***-	40S ribosomal protein S27-2	IPR000592 (Ribosomal protein S27e), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03770g02003.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf01502g02021.1			Unknown protein		
Niben101Scf02297g08001.1	sp|A5GNB2|ATPE_SYNPW	****	ATP synthase epsilon chain	IPR001469 (ATPase, F1 complex, delta/epsilon subunit)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf04300g01006.1			Unknown protein		
Niben101Scf04223g01022.1	sp|Q41009|TOC34_PEA	*-*-	Translocase of chloroplast 34	IPR005690 (Chloroplast protein import component Toc86/159), IPR024283 (Domain of unknown function DUF3406, chloroplast translocase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides)
Niben101Scf02294g03010.1	sp|B9T536|TPS10_RICCO	*-**	Terpene synthase 10	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf01824g00013.1	sp|P81370|TLP_ACTDE	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf10743g02013.1	sp|Q7XT42|SPL7_ORYSJ	*-**	Squamosa promoter-binding-like protein 7	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf08195g01004.1	sp|Q00985|ACCO1_MALDO	*-*-	1-aminocyclopropane-1-carboxylate oxidase 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00414g05004.1	gb|ACI05253.1|	***-	type I MADS box transcription factor [Petunia x hybrida]		
Niben101Scf00352g02001.1	gb|AES89913.2|	***-	myb-like transcription factor family protein [Medicago truncatula]	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf11621g00008.1	AT5G18050.1	***-	SAUR-like auxin-responsive protein family LENGTH=90	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf33214g00005.1			Unknown protein		
Niben101Scf22773g00011.1	AT3G47980.1	*-*-	Integral membrane HPP family protein LENGTH=252	IPR007065 (HPP)	
Niben101Scf08088g03002.1	sp|Q9RTI6|LEUC2_DEIRA	***-	3-isopropylmalate dehydratase large subunit 2	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf29041g00001.1	sp|Q9LNU6|PPR53_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf15017g00003.1	sp|O49399|PP321_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00503g04003.1	sp|B0G159|MCFC_DICDI	***-	Mitochondrial substrate carrier family protein C	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf01687g03005.1	sp|Q9SSR4|PPR77_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02631g05006.1	sp|P05499|ATP6_TOBAC	*-**	ATP synthase subunit a	IPR000568 (ATPase, F0 complex, subunit A)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf01825g04015.1	sp|Q92JJ8|SDHB_RICCN	****	Succinate dehydrogenase iron-sulfur subunit	IPR004489 (Succinate dehydrogenase/fumarate reductase iron-sulphur protein), IPR009051 (Alpha-helical ferredoxin), IPR012675 (Beta-grasp domain), IPR017896 (4Fe-4S ferredoxin-type, iron-sulphur binding domain)	GO:0006099 (tricarboxylic acid cycle), GO:0009055 (electron carrier activity), GO:0016491 (oxidoreductase activity), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf22195g00025.1	sp|Q8LC83|RS242_ARATH	***-	40S ribosomal protein S24-2	IPR001976 (Ribosomal protein S24e), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01434g02002.1	sp|Q6NYY9|VMP1_DANRE	*-*-	Vacuole membrane protein 1		
Niben101Scf22524g00012.1	sp|A6V3B9|KDSB_PSEA7	****	3-deoxy-manno-octulosonate cytidylyltransferase	IPR003329 (Acylneuraminate cytidylyltransferase), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005737 (cytoplasm), GO:0008690 (3-deoxy-manno-octulosonate cytidylyltransferase activity), GO:0009103 (lipopolysaccharide biosynthetic process)
Niben101Scf07188g00022.1	sp|Q8BFS9|ASND1_MOUSE	****	Asparagine synthetase domain-containing protein 1	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004066 (asparagine synthase (glutamine-hydrolyzing) activity), GO:0006529 (asparagine biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf06406g00002.1	sp|O64644|SAP18_ARATH	***-	Histone deacetylase complex subunit SAP18	IPR010516 (Sin3 associated polypeptide p18)	
Niben101Scf00448g04005.1	sp|O65390|APA1_ARATH	****	Aspartic proteinase A1	IPR001461 (Aspartic peptidase), IPR011001 (Saposin-like), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis), GO:0006629 (lipid metabolic process)
Niben101Scf02798g00057.1	ATMG01330.1	*-*-	hypothetical protein chrM:329082-329465 REVERSE LENGTH=127		
Niben101Scf05476g03002.1	gb|AAD15518.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf01125g03003.1	AT5G35810.1	***-	Ankyrin repeat family protein LENGTH=347	IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	
Niben101Scf00724g00005.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08812g02011.1	ref|NP_004308.2|	****	ATPase ASNA1 [Homo sapiens] ref|NP_001092334.1| ATPase ASNA1 [B product [Homo sapiens] tpg|DAA28025.1| TPA: arsA arsenite transporter, ATP-binding, homolog 1 [Bos taurus] gb|ADZ15365.1| arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) [synthetic construct] gb|EHH29684.1| ATPase ASNA1 [Macaca mulatta] gb|EHH59253.1| ATPase ASNA1 [Macaca fascicularis] gb|ELK06712.1| ATPase ASNA1 [Pteropus alecto] gb|ELR52911.1| ATPase ASNA1 [Bos mutus] gb|AHJ25817.1| arsa arsenite transporter ATP-binding [Panthera tigris altaica] gb|AIC48309.1| ASNA1, partial [synthetic construct]	IPR016300 (Arsenical pump ATPase, ArsA/GET3), IPR025723 (Anion-transporting ATPase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf10753g00003.1	sp|Q9LEX0|P2A13_ARATH	***-	F-box protein PP2-A13	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf00854g04020.1	sp|Q9SF40|RL4A_ARATH	***-	60S ribosomal protein L4-1	IPR002136 (Ribosomal protein L4/L1e), IPR023574 (Ribosomal protein L4 domain), IPR025755 (60S ribosomal protein L4, C-terminal domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00247g05001.1	AT2G47940.1	***-	DEGP protease 2 LENGTH=607	IPR001478 (PDZ domain), IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity), GO:0005515 (protein binding)
Niben101Scf00317g09001.1	AT4G27670.1	***-	heat shock protein 21 LENGTH=227	IPR008978 (HSP20-like chaperone)	
Niben101Scf04551g02001.1	ref|WP_011610017.1|	*-**	group 1 glycosyl transferase [Trichodesmium erythraeum] ref|YP_720092.1| group 1 glycosyl transferase [Trichodesmium erythraeum IMS101] gb|ABG49619.1| glycosyl transferase, group 1 [Trichodesmium erythraeum IMS101]	IPR007657 (Glycosyltransferase AER61, uncharacterised)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf11844g02011.1	AT1G45160.2	****	Protein kinase superfamily protein LENGTH=1067	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08566g08015.1	sp|Q9XIV8|PERN1_TOBAC	****	Peroxidase N1	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07817g00001.1	sp|Q9FKZ3|LBD36_ARATH	*-*-	LOB domain-containing protein 36	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf02165g02002.1	ATMG00090.1	****	structural constituent of ribosome;protein binding chrM:25482-28733 REVERSE LENGTH=556	IPR000114 (Ribosomal protein L16), IPR001351 (Ribosomal protein S3, C-terminal), IPR016180 (Ribosomal protein L10e/L16)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf00328g04011.1	emb|CDX98211.1|	*-*-	BnaC07g08870D [Brassica napus]		
Niben101Scf00646g01008.1	AT1G68140.1	*-*-	Protein of unknown function (DUF1644) LENGTH=334	IPR012866 (Protein of unknown function DUF1644), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf04287g04009.1	sp|A2PZN8|YAB7_ORYSJ	***-	Protein YABBY 7	IPR006780 (YABBY protein)	
Niben101Scf07137g00004.1			Unknown protein		
Niben101Scf03850g03009.1	sp|P93332|NOD3_MEDTR	*-*-	Bidirectional sugar transporter N3		
Niben101Scf02170g01012.1	sp|O04057|ASPR_CUCPE	****	Aspartic proteinase	IPR001461 (Aspartic peptidase), IPR011001 (Saposin-like), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis), GO:0006629 (lipid metabolic process)
Niben101Scf00120g01010.1	sp|Q6H5U3|DES1L_ORYSJ	****	Sphingolipid delta(4)-desaturase DES1-like	IPR011388 (Sphingolipid delta4-desaturase)	GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0030148 (sphingolipid biosynthetic process)
Niben101Scf01050g00011.1	AT5G57330.1	***-	Galactose mutarotase-like superfamily protein LENGTH=312	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf00812g01007.1			Unknown protein		
Niben101Scf02922g02002.1	sp|P0C8Q7|PP369_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf05821g01013.1	AT5G41060.1	*-*-	DHHC-type zinc finger family protein LENGTH=410		
Niben101Scf04650g00006.1	sp|Q09326|MGAT2_RAT	****	Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	IPR007754 (N-acetylglucosaminyltransferase II), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005795 (Golgi stack), GO:0008455 (alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity), GO:0009312 (oligosaccharide biosynthetic process), GO:0016021 (integral component of membrane)
Niben101Scf01037g07001.1	AT2G01818.1	***-	PLATZ transcription factor family protein LENGTH=222	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf00735g03006.1	sp|P93755|C3H30_ARATH	***-	Zinc finger CCCH domain-containing protein 30	IPR000571 (Zinc finger, CCCH-type), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf06825g02003.1	AT3G17840.1	****	receptor-like kinase 902 LENGTH=647	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00046g02003.1	AT1G67880.1	****	beta-1,4-N-acetylglucosaminyltransferase family protein LENGTH=390	IPR006813 (Glycosyl transferase, family 17)	GO:0003830 (beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity), GO:0006487 (protein N-linked glycosylation), GO:0016020 (membrane)
Niben101Scf05506g09007.1	sp|Q5VRH9|PUB12_ORYSJ	***-	U-box domain-containing protein 12	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf02197g04009.1	sp|A6KYH3|RS13_BACV8	--*-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00553g01001.1	AT4G00820.1	***-	IQ-domain 17 LENGTH=534	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf12674g00010.1	sp|Q8GW29|LOG7_ARATH	***-	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf05147g01015.1	sp|Q9CR80|FA32A_MOUSE	*-*-	Protein FAM32A	IPR013865 (Protein of unknown function DUF1754, eukaryotic)	
Niben101Scf06734g01022.1			Unknown protein		
Niben101Scf27914g00006.1	AT4G24190.1	*-*-	Chaperone protein htpG family protein LENGTH=823	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf04485g02018.1	AT3G23530.1	*-*-	Cyclopropane-fatty-acyl-phospholipid synthase LENGTH=867	IPR003333 (Mycolic acid cyclopropane synthase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008610 (lipid biosynthetic process)
Niben101Scf04528g11001.1	sp|A2BMB2|RL2_HYPBU	***-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01304g13024.1	AT2G04220.1	***-	Plant protein of unknown function (DUF868) LENGTH=307	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf04316g02003.1	sp|Q05B92|TFE3_BOVIN	--*-	Transcription factor E3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04407g01010.1	sp|Q38806|HSP22_ARATH	*-*-	22.0 kDa heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf04619g01010.1	sp|Q9ZQ89|UPS2_ARATH	***-	Ureide permease 2	IPR009834 (Ureide permease), IPR010651 (Sugar transport protein)	GO:0015144 (carbohydrate transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0034219 (carbohydrate transmembrane transport), GO:0071705 (nitrogen compound transport)
Niben101Scf00813g01007.1	sp|Q9SIV5|C3H19_ARATH	*-**	Zinc finger CCCH domain-containing protein 19	IPR003121 (SWIB/MDM2 domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03693g05010.1	AT2G18500.1	*-*-	ovate family protein 7 LENGTH=315	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf00944g07004.1	AT2G33470.1	****	glycolipid transfer protein 1 LENGTH=202	IPR014830 (Glycolipid transfer protein domain)	GO:0005737 (cytoplasm), GO:0017089 (glycolipid transporter activity), GO:0046836 (glycolipid transport), GO:0051861 (glycolipid binding)
Niben101Scf02972g07001.1	sp|Q6GQ69|FAF2B_XENLA	***-	FAS-associated factor 2-B	IPR006577 (UAS), IPR009060 (UBA-like), IPR012336 (Thioredoxin-like fold), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf20077g00029.1	AT1G71696.2	****	carboxypeptidase D, putative LENGTH=491	IPR000834 (Peptidase M14, carboxypeptidase A), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0004181 (metallocarboxypeptidase activity), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding)
Niben101Scf14408g00002.1	sp|B3EWI4|PST2_PETHY	***-	Photosystem II 5 kDa protein, chloroplastic		
Niben101Scf00854g07035.1	ref|XP_010110759.1|	--*-	50S rib L2 [Morus notabilis]		
Niben101Scf11512g01005.1	AT2G26150.1	****	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01310g04011.1	sp|Q6Q9I2|MAD15_ORYSJ	*-*-	MADS-box transcription factor 15	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Ctg14880g00003.1	sp|P11435|CPPM_STRHY	***-	Carboxyvinyl-carboxyphosphonate phosphorylmutase	IPR015813 (Pyruvate/Phosphoenolpyruvate kinase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01721g09003.1	ref|XP_006371799.1|	*-**	calmodulin-binding family protein [Populus trichocarpa] gb|ERP49596.1| calmodulin-binding family protein [Populus trichocarpa]	IPR012417 (Calmodulin-binding domain, plant)	GO:0005516 (calmodulin binding)
Niben101Scf02819g00004.1	sp|Q9XI36|MBD10_ARATH	*-**	Methyl-CpG-binding domain-containing protein 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf00078g02001.1	sp|P49210|RL9_ORYSJ	***-	60S ribosomal protein L9	IPR000702 (Ribosomal protein L6)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf05522g00008.1	sp|O48837|LRKS2_ARATH	--**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03145g07012.1	sp|Q9SX45|PPR75_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07227g01019.1	sp|Q41001|BCP_PEA	***-	Blue copper protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf05702g02009.1	AT3G58830.1	***-	haloacid dehalogenase (HAD) superfamily protein LENGTH=343	IPR010021 (HAD-superfamily phosphatase, YqeG-like), IPR023214 (HAD-like domain)	
Niben101Scf01576g01009.1	sp|Q5Z2U3|PANC_NOCFA	--*-	Pantothenate synthetase		
Niben101Scf02372g00024.1	sp|O28216|PFDA_ARCFU	-***	Prefoldin subunit alpha	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex), GO:0051082 (unfolded protein binding)
Niben101Scf03934g03004.1	AT1G48910.1	****	Flavin-containing monooxygenase family protein LENGTH=383	IPR000103 (Pyridine nucleotide-disulphide oxidoreductase, class-II), IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11767g02019.1	AT1G66340.1	****	Signal transduction histidine kinase, hybrid-type, ethylene sensor LENGTH=738	IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily), IPR014525 (Signal transduction histidine kinase, hybrid-type, ethylene sensor), IPR029016 (GAF domain-like)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004673 (protein histidine kinase activity), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0005789 (endoplasmic reticulum membrane), GO:0007165 (signal transduction), GO:0009873 (ethylene-activated signaling pathway), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01143g11009.1	sp|Q9SIK7|PSNB_ARATH	***-	Presenilin-like protein	IPR006639 (Presenilin/signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf02170g00001.1	AT1G71680.1	***-	Transmembrane amino acid transporter family protein LENGTH=448	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf03694g04002.1	AT4G05220.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=226	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf05584g02016.1	sp|P42776|GBF3_ARATH	****	G-box-binding factor 3	IPR004827 (Basic-leucine zipper domain), IPR012900 (G-box binding, MFMR)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01812g03003.1			Unknown protein		
Niben101Scf02791g01005.1	sp|Q9FK54|FB260_ARATH	*-*-	F-box protein		
Niben101Scf04335g00004.1	AT5G50400.1	****	purple acid phosphatase 27 LENGTH=611	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf02060g07007.1	sp|Q9NVI1|FANCI_HUMAN	*-*-	Fanconi anemia group I protein	IPR016024 (Armadillo-type fold), IPR029308 (FANCI solenoid 1 domain), IPR029310 (FANCI helical domain 1), IPR029312 (FANCI helical domain 2), IPR029314 (FANCI solenoid 4 domain), IPR029315 (FANCI solenoid 2 domain)	GO:0005488 (binding)
Niben101Scf06619g00005.1	sp|Q9Y2K2|SIK3_HUMAN	--*-	Serine/threonine-protein kinase SIK3		
Niben101Scf02145g09006.1	sp|O04057|ASPR_CUCPE	****	Aspartic proteinase	IPR001461 (Aspartic peptidase), IPR011001 (Saposin-like), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis), GO:0006629 (lipid metabolic process)
Niben101Scf00744g07001.1	sp|B4F721|NFL_XENTR	--*-	Neurofilament light polypeptide		
Niben101Scf02798g00014.1	sp|P15688|NU2M_BETVU	*-*-	NADH-ubiquinone oxidoreductase chain 2		
Niben101Scf06248g01016.1			Unknown protein		
Niben101Scf05821g02010.1	gb|KEH20821.1|	*-*-	ATP/DNA-binding protein [Medicago truncatula]		
Niben101Scf08653g00001.1	sp|Q01372|EF1A_NEUCR	***-	Elongation factor 1-alpha	IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf05177g03015.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00581g01010.1	sp|P76440|PRET_ECOLI	--*-	NAD-dependent dihydropyrimidine dehydrogenase subunit PreT		
Niben101Scf00751g06033.1	sp|Q96L42|KCNH8_HUMAN	*-**	Potassium voltage-gated channel subfamily H member 8	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR013099 (Two pore domain potassium channel domain), IPR020683 (Ankyrin repeat-containing domain)	GO:0005249 (voltage-gated potassium channel activity), GO:0006813 (potassium ion transport), GO:0016020 (membrane)
Niben101Scf00682g02003.1	gb|AAF18635.1|AC006228_6	--*-	F5J5.9 [Arabidopsis thaliana]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf00367g09004.1	sp|Q9FJY7|PP449_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01718g01002.1	sp|Q39255|SKP1A_ARATH	***-	SKP1-like protein 1A	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf00495g00004.1	sp|Q4V8X0|TPRA1_DANRE	-**-	Transmembrane protein adipocyte-associated 1 homolog	IPR018781 (Transmembrane protein adipocyte-associated 1)	
Niben101Scf10124g04007.1	sp|A2VE55|S35D2_BOVIN	*-*-	UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter		
Niben101Scf14172g00008.1	sp|Q2GNZ6|XRN2_CHAGB	--*-	5'-3' exoribonuclease 2	IPR004859 (Putative 5-3 exonuclease)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf01970g01013.1	sp|A8PWB6|BOP1_BRUMA	****	Ribosome biogenesis protein BOP1 homolog	IPR012953 (BOP1, N-terminal domain), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR028598 (WD repeat BOP1/Erb1)	GO:0005515 (protein binding), GO:0006364 (rRNA processing), GO:0042254 (ribosome biogenesis)
Niben101Scf02836g03010.1	sp|Q3SZE2|PFD1_BOVIN	****	Prefoldin subunit 1	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex), GO:0051082 (unfolded protein binding)
Niben101Scf05368g02016.1	gb|KEH22910.1|	***-	far-red elongated hypocotyl protein, putative [Medicago truncatula]		
Niben101Scf01062g01016.1	sp|Q16G71|MED10_AEDAE	****	Mediator of RNA polymerase II transcription subunit 10	IPR019145 (Mediator complex, subunit Med10)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf09459g00023.1	sp|Q5M868|GBA2_RAT	*-*-	Non-lysosomal glucosylceramidase		
Niben101Scf01124g09010.1	gb|ABA96219.1|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf05274g01006.1	emb|CDX76648.1|	***-	BnaC08g32340D [Brassica napus]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf00348g01019.1			Unknown protein		
Niben101Scf04870g01004.1			Unknown protein		
Niben101Scf04122g00001.1	sp|Q9LJB7|BBX32_ARATH	*-**	B-box zinc finger protein 32	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf01374g13005.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR018392 (LysM domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05997g00005.1	sp|Q9AWM9|RPF2_ORYSJ	***-	Ribosome production factor 2 homolog	IPR007109 (Brix domain)	
Niben101Scf06795g03005.1	sp|P81392|MYB06_ANTMA	*-*-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03340g04011.1	sp|P11605|NIA1_TOBAC	****	Nitrate reductase [NADH] 1	IPR008335 (Eukaryotic molybdopterin oxidoreductase), IPR014756 (Immunoglobulin E-set)	GO:0009055 (electron carrier activity), GO:0016491 (oxidoreductase activity), GO:0030151 (molybdenum ion binding), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01917g06006.1	sp|Q9UXZ0|ENO_PYRAB	*-*-	Enolase	IPR000941 (Enolase), IPR029065 (Enolase C-terminal domain-like)	GO:0000015 (phosphopyruvate hydratase complex), GO:0000287 (magnesium ion binding), GO:0004634 (phosphopyruvate hydratase activity), GO:0006096 (glycolytic process)
Niben101Scf12205g03027.1	sp|Q9SUD8|PP340_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR001128 (Cytochrome P450), IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005506 (iron ion binding), GO:0005515 (protein binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01930g00016.1	AT4G25770.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=418	IPR007751 (Domain of unknown function DUF676, lipase-like), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01888g03009.1	sp|Q9CAL2|CRK3_ARATH	*-**	Cysteine-rich receptor-like protein kinase 3	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02783g01002.1	AT5G04820.1	***-	ovate family protein 13 LENGTH=260	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf01534g04024.1	emb|CAA67813.1|	*-*-	extensin-like protein Dif10 [Solanum lycopersicum]		
Niben101Scf02354g07001.1	sp|Q7PCJ9|SAT2_PIG	****	Diamine acetyltransferase 2	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf07746g00007.1	AT4G26640.2	****	WRKY family transcription factor family protein LENGTH=557	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03510g08008.1	sp|Q54XK2|SC61A_DICDI	*-**	Protein transport protein Sec61 subunit alpha	IPR002208 (SecY/SEC61-alpha family), IPR023201 (SecY subunit domain)	GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf21408g00017.1	AT3G05480.3	*-*-	cell cycle checkpoint control protein family LENGTH=456		
Niben101Scf04871g24030.1	sp|Q56YN8|SMC3_ARATH	***-	Structural maintenance of chromosomes protein 3	IPR003395 (RecF/RecN/SMC, N-terminal), IPR010935 (SMCs flexible hinge), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029685 (Structural maintenance of chromosomes protein 3)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0006281 (DNA repair), GO:0007064 (mitotic sister chromatid cohesion), GO:0008280 (cohesin core heterodimer), GO:0051276 (chromosome organization)
Niben101Scf03309g08007.1	AT1G51700.1	*-*-	DOF zinc finger protein 1 LENGTH=194	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf12141g00009.1	sp|A4VCM0|NAC45_ARATH	*-*-	NAC domain-containing protein 45	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01372g10006.1	emb|CDX95452.1|	--*-	BnaC01g33440D [Brassica napus]		
Niben101Scf05425g00011.1	ref|XP_002534684.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF27698.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03861g01002.1	sp|A7GCK7|PSUG_CLOBL	*-*-	Pseudouridine-5'-phosphate glycosidase	IPR004158 (Protein of unknown function DUF247, plant), IPR007342 (Pseudouridine-5'-phosphate glycosidase)	GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf02344g06022.1	AT3G04350.1	***-	Plant protein of unknown function (DUF946) LENGTH=567	IPR009291 (Vacuolar protein sorting-associated protein 62)	
Niben101Scf07728g00011.1	sp|Q9SSQ2|FB55_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf05278g01015.1	ref|XP_007042708.1|	*-*-	NAD(P)-binding R isoform 1 [Theobroma cacao]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf06720g01014.1	tpg|DAA52266.1|	*-*-	TPA: hypothetical protein ZEAMMB73_414494 [Zea mays]		
Niben101Scf02483g06003.1	AT2G02960.5	*-**	RING/FYVE/PHD zinc finger superfamily protein LENGTH=275	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022143 (Protein of unknown function DUF3675)	GO:0008270 (zinc ion binding)
Niben101Scf02936g00001.1	AT3G49780.1	***-	phytosulfokine 4 precursor LENGTH=79	IPR009438 (Phytosulfokine)	GO:0005576 (extracellular region), GO:0008083 (growth factor activity), GO:0008283 (cell proliferation)
Niben101Scf10482g01022.1	sp|Q9QZH4|AAKB2_RAT	*-*-	5'-AMP-activated protein kinase subunit beta-2	IPR013783 (Immunoglobulin-like fold), IPR014756 (Immunoglobulin E-set)	
Niben101Scf05188g03011.1	sp|A4QL86|PSBA_LEPVR	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf01305g02004.1	sp|P93654|SYP22_ARATH	***-	Syntaxin-22	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf04609g00012.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf15203g00003.1	sp|Q9ZVQ9|PP2B7_ARATH	*-*-	F-box protein PP2-B7	IPR025886 (Phloem protein 2-like)	
Niben101Scf09973g00011.1	sp|O82012|HSP12_SOLPE	***-	17.6 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf06085g00014.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf09840g00001.1	sp|P58339|OCD2_RHIME	***-	Ornithine cyclodeaminase 2	IPR003462 (Ornithine cyclodeaminase/mu-crystallin), IPR023401 (Ornithine cyclodeaminase, N-terminal)	
Niben101Scf03202g06001.1	sp|Q9M040|PDC4_ARATH	*-*-	Pyruvate decarboxylase 4	IPR012001 (Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain), IPR029061 (Thiamin diphosphate-binding fold)	GO:0030976 (thiamine pyrophosphate binding)
Niben101Scf01937g02006.1	sp|P55200|KMT2A_MOUSE	*-**	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR003105 (SRA-YDG), IPR007728 (Pre-SET domain), IPR015947 (PUA-like domain), IPR025794 (Histone H3-K9 methyltransferase, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016571 (histone methylation), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0042393 (histone binding)
Niben101Scf11646g02012.1	sp|B6ETT4|SYT2_ARATH	*-*-	Synaptotagmin-2	IPR000008 (C2 domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0005515 (protein binding), GO:0006629 (lipid metabolic process)
Niben101Scf04956g00002.1	sp|Q0T7A9|AES_SHIF8	*-*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf07147g01013.1			Unknown protein		
Niben101Scf01609g00001.1	sp|O22527|CLH1_ARATH	****	Chlorophyllase-1	IPR010821 (Chlorophyllase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0015996 (chlorophyll catabolic process), GO:0047746 (chlorophyllase activity)
Niben101Scf18175g01012.1	sp|Q9C9H7|RLP12_ARATH	*-*-	Receptor-like protein 12	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf07585g00039.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00119g04007.1	gb|KEH39417.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf11009g00040.1	sp|Q9SH60|PP103_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05989g04009.1	sp|C0ZAS6|URK_BREBN	*-**	Uridine kinase	IPR000764 (Uridine kinase like), IPR023577 (CYTH-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016301 (kinase activity)
Niben101Scf04697g02001.1	sp|Q9SVA5|PP357_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01574g09001.1	ref|XP_002313839.2|	***-	Calmodulin-binding family protein [Populus trichocarpa] gb|EEE87794.2| Calmodulin-binding family protein [Populus trichocarpa]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf01313g02004.1	sp|Q566M8|RN150_DANRE	--*-	RING finger protein 150	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05811g00002.1	sp|Q9YFQ8|HELS_AERPE	*-**	ATP-dependent DNA helicase Hel308	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR016438 (RNA helicase, ATP-dependent, SK12/DOB1), IPR025696 (rRNA-processing arch domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf03018g03003.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06369g01020.1	emb|CBM56257.1|	*-**	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03653g01026.1	sp|Q5CB03|B3GA1_CANFA	****	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1	IPR005027 (Glycosyl transferase, family 43), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0015018 (galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity), GO:0016020 (membrane)
Niben101Scf04138g00002.1	gb|KEH35501.1|	***-	COP1-interacting-like protein, putative [Medicago truncatula]		
Niben101Scf01664g02022.1	AT5G66120.2	****	3-dehydroquinate synthase, putative LENGTH=442	IPR016037 (3-dehydroquinate synthase AroB)	GO:0003856 (3-dehydroquinate synthase activity), GO:0005737 (cytoplasm), GO:0009073 (aromatic amino acid family biosynthetic process)
Niben101Scf01370g00008.1	sp|A1U486|GATA_MARHV	--*-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf00671g00007.1	sp|Q8SQ27|RBM12_MACMU	*-**	RNA-binding protein 12	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03287g00020.1	sp|A6TFG7|GHRB_KLEP7	****	Glyoxylate/hydroxypyruvate reductase B	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01994g00002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01221g07008.1	sp|O22781|SUVH2_ARATH	****	Histone-lysine N-methyltransferase family member SUVH2	IPR001214 (SET domain), IPR003105 (SRA-YDG), IPR007728 (Pre-SET domain), IPR015947 (PUA-like domain), IPR025794 (Histone H3-K9 methyltransferase, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016571 (histone methylation), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0042393 (histone binding)
Niben101Scf00380g04014.1	sp|Q5PNU3|AMSH3_ARATH	***-	AMSH-like ubiquitin thioesterase 3	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR015063 (USP8 dimerisation domain)	GO:0005515 (protein binding)
Niben101Scf15962g00018.1	sp|Q1GBR1|RSMA_LACDA	****	Ribosomal RNA small subunit methyltransferase A	IPR001737 (Ribosomal RNA adenine methyltransferase KsgA/Erm), IPR023165 (rRNA adenine dimethylase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0000154 (rRNA modification), GO:0000179 (rRNA (adenine-N6,N6-)-dimethyltransferase activity), GO:0006364 (rRNA processing), GO:0008649 (rRNA methyltransferase activity)
Niben101Scf00984g03007.1	sp|Q9D1Q4|DPM3_MOUSE	--*-	Dolichol-phosphate mannosyltransferase subunit 3	IPR013174 (Dolichol-phosphate mannosyltransferase subunit 3)	
Niben101Scf01053g00007.1	sp|Q8W4I4|POT6_ARATH	*-**	Potassium transporter 6	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf05621g05001.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00024g04009.1			Unknown protein		
Niben101Scf05811g02023.1	sp|Q76FS2|TBB8_ORYSJ	*-*-	Tubulin beta-8 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf09107g01007.1	AT1G13890.1	***-	soluble N-ethylmaleimide-sensitive factor adaptor protein 30 LENGTH=263	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf14636g01014.1	emb|CDY10501.1|	--*-	BnaC03g71130D [Brassica napus]		
Niben101Scf07253g02012.1	AT1G65820.3	***-	microsomal glutathione s-transferase, putative LENGTH=194	IPR001129 (Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein), IPR023352 (Membrane associated eicosanoid/glutathione metabolism-like domain)	
Niben101Scf02793g12008.1	gb|ADE43053.1|	--*-	restricted tev movement 1 [Arabidopsis thaliana]	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf07242g02003.1			Unknown protein		
Niben101Scf07250g03031.1	AT2G17840.1	***-	Senescence/dehydration-associated protein-related LENGTH=452	IPR009686 (Senescence/spartin-associated)	
Niben101Scf02513g07008.1	sp|Q5WZ34|FABZ_LEGPL	***-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	IPR010084 (Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ), IPR029069 (HotDog domain)	GO:0005737 (cytoplasm), GO:0006633 (fatty acid biosynthetic process), GO:0016836 (hydro-lyase activity)
Niben101Scf04748g03007.1	ref|XP_007011630.1|	****	DNA binding protein, putative isoform 1 [Theobroma cacao] gb|EOY29249.1| DNA binding protein, putative isoform 1 [Theobroma cacao]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf00017g00021.1	sp|D1BZ82|MSHA_XYLCX	*-*-	D-inositol 3-phosphate glycosyltransferase	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf00560g06004.1	AT4G05110.1	*-**	equilibrative nucleoside transporter 6 LENGTH=418	IPR002259 (Equilibrative nucleoside transporter)	GO:0005337 (nucleoside transmembrane transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf03753g00019.1	sp|Q9C811|NU160_ARATH	***-	Nuclear pore complex protein NUP160	IPR021717 (Nucleoporin Nup120/160)	
Niben101Scf04445g04006.1	sp|P0C7P8|LHWL1_ARATH	*-*-	Transcription factor EMB1444	IPR025610 (Transcription factor MYC/MYB N-terminal)	
Niben101Scf09101g00002.1	sp|Q9FGK4|B561J_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR006593 (Cytochrome b561/ferric reductase transmembrane)	
Niben101Scf02007g01003.1	emb|CAE05023.2|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf12954g03004.1	AT5G27690.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=352	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Ctg11328g00002.1	AT4G16580.1	***-	Protein phosphatase 2C family protein LENGTH=467	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf05206g06003.1	AT5G59290.2	***-	UDP-glucuronic acid decarboxylase 3 LENGTH=357	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf02440g01039.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR021820 (S-locus receptor kinase, C-terminal), IPR022126 (S-locus, receptor kinase), IPR024171 (S-receptor-like serine/threonine-protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf00077g03005.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04096g02017.1	emb|CDX74341.1|	***-	BnaA03g27060D [Brassica napus]		
Niben101Scf08357g03006.1	sp|P0DI44|CASP1_SOLTU	*-*-	Casparian strip membrane protein 1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf06378g03005.1	ref|XP_003600991.1|	*-**	DNA repair and recombination protein RAD54-like protein [Medicago truncatula] gb|AES71242.1| chromatin remodeling complex subunit [Medicago truncatula]	IPR000330 (SNF2-related), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf00693g01009.1	sp|Q6NUB2|CW15A_XENLA	*-*-	Protein CWC15 homolog A	IPR006973 (Pre-mRNA-splicing factor  Cwf15/Cwc15)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf01552g01005.1	sp|Q5QMT0|BGL01_ORYSJ	*-*-	Beta-glucosidase 1	IPR001360 (Glycoside hydrolase, family 1), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02082g00003.1	sp|O64759|CAAT5_ARATH	*-**	Cationic amino acid transporter 5	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf10455g00004.1	sp|P39958|GDI1_YEAST	*-*-	Rab GDP-dissociation inhibitor	IPR018203 (GDP dissociation inhibitor)	
Niben101Scf06203g05018.1	sp|Q9XIM8|PP155_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00339g00001.1	emb|CDY71112.1|	***-	BnaCnng71370D [Brassica napus]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf01623g06009.1	sp|Q84WQ5|CBSX5_ARATH	*-*-	CBS domain-containing protein CBSX5		
Niben101Scf00914g03002.1	sp|Q1GPA5|RS3_SPHAL	--*-	30S ribosomal protein S3		
Niben101Scf00161g03019.1			Unknown protein		
Niben101Scf03022g00002.1	sp|Q8H129|PPA3_ARATH	*-*-	Purple acid phosphatase 3	IPR029052 (Metallo-dependent phosphatase-like)	
Niben101Scf00369g03017.1	sp|Q5RF63|RECQ1_PONAB	*-**	ATP-dependent DNA helicase Q1	IPR004589 (DNA helicase, ATP-dependent, RecQ type), IPR009060 (UBA-like), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006310 (DNA recombination), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf02243g02006.1	sp|P61242|YCF2_SOLLC	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf10608g01005.1	sp|O23264|SEBP1_ARATH	****	Selenium-binding protein 1	IPR008826 (Selenium-binding protein)	GO:0005515 (protein binding), GO:0008430 (selenium binding)
Niben101Scf11649g00003.1	gb|KEH20517.1|	*-*-	zinc ion-binding protein [Medicago truncatula]		
Niben101Scf09584g00032.1	sp|Q92BE3|ACCA_LISIN	****	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	IPR001095 (Acetyl-CoA carboxylase, alpha subunit), IPR011763 (Acetyl-coenzyme A carboxyltransferase, C-terminal), IPR029045 (ClpP/crotonase-like domain)	GO:0003989 (acetyl-CoA carboxylase activity), GO:0006633 (fatty acid biosynthetic process), GO:0009317 (acetyl-CoA carboxylase complex), GO:0016874 (ligase activity)
Niben101Scf00870g17012.1	sp|Q9SLK6|ALA6_ARATH	****	Phospholipid-transporting ATPase 6	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf03565g00006.1	sp|Q9M352|RL362_ARATH	***-	60S ribosomal protein L36-2	IPR000509 (Ribosomal protein L36e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf19159g01005.1	sp|Q6VVA6|HAK1_ORYSJ	*-**	Potassium transporter 1	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf00815g00012.1	sp|P9WQN2|FTSH_MYCTO	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf07722g01002.1	sp|Q2JW78|DNAJ_SYNJA	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf01154g02003.1	AT2G44830.1	*-**	Protein kinase superfamily protein LENGTH=765	IPR000014 (PAS domain), IPR000700 (PAS-associated, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004871 (signal transducer activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03573g00005.1	dbj|BAD66730.1|	-**-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf04375g10006.1	emb|CEF97928.1|	*-**	Nucleotide-binding, alpha-beta plait [Ostreococcus tauri]	IPR007201 (RNA recognition motif 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf05434g03015.1	sp|Q7WKG2|AQPZ_BORBR	***-	Aquaporin Z	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02155g02006.1	sp|Q9SMP0|NFYC1_ARATH	****	Nuclear transcription factor Y subunit C-1	IPR009072 (Histone-fold), IPR027170 (Transcriptional activator NFYC/HAP5 subunit)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005622 (intracellular), GO:0006355 (regulation of transcription, DNA-templated), GO:0016602 (CCAAT-binding factor complex), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf00288g18013.1	sp|Q7VAS9|ARGD_PROMA	*-*-	Acetylornithine aminotransferase	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf06851g00002.1	sp|P22035|BAS1_YEAST	--**	Myb-like DNA-binding protein BAS1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf02016g00010.1			Unknown protein		
Niben101Scf12746g00021.1	sp|Q9XFD1|NCBP2_ARATH	*-**	Nuclear cap-binding protein subunit 2	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR027157 (Nuclear cap-binding protein subunit 2)	GO:0000166 (nucleotide binding), GO:0000339 (RNA cap binding), GO:0005846 (nuclear cap binding complex), GO:0045292 (mRNA cis splicing, via spliceosome)
Niben101Scf05615g00002.1	AT4G00340.1	****	receptor-like protein kinase 4 LENGTH=818	IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02115g04001.1	AT5G10770.1	***-	Eukaryotic aspartyl protease family protein LENGTH=474	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01063g07012.1	sp|Q803I8|SYVN1_DANRE	*-*-	E3 ubiquitin-protein ligase synoviolin		
Niben101Scf13167g02002.1	AT1G30820.1	****	CTP synthase family protein LENGTH=600	IPR004468 (CTP synthase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003883 (CTP synthase activity), GO:0006221 (pyrimidine nucleotide biosynthetic process)
Niben101Scf01989g00011.1	emb|CDY70616.1|	***-	BnaA03g54770D [Brassica napus]		
Niben101Scf09005g01013.1	sp|Q5BQN5|WAP_SOLLC	***-	WPP domain-associated protein		
Niben101Scf04124g00003.1	ref|XP_002320707.1|	*-*-	zinc finger family protein [Populus trichocarpa] gb|EEE99022.1| zinc finger family protein [Populus trichocarpa]		
Niben101Scf00854g08015.1			Unknown protein		
Niben101Scf05767g08019.1	sp|Q9CHL8|LMRA_LACLA	*-**	Multidrug resistance ABC transporter ATP-binding and permease protein	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf07793g02010.1	sp|Q8L8Q3|LBD25_ARATH	***-	LOB domain-containing protein 25	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf00883g12009.1	sp|Q6PQZ1|AQP1_PIG	***-	Aquaporin-1	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00370g03005.1	sp|Q9NS56|TOPRS_HUMAN	*-*-	E3 ubiquitin-protein ligase Topors	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf26911g00007.1	ref|XP_006380128.1|	***-	wound-responsive family protein [Populus trichocarpa] gb|ERP57925.1| wound-responsive family protein [Populus trichocarpa]		
Niben101Scf00212g02003.1	sp|Q9JLV6|PNKP_MOUSE	*-*-	Bifunctional polynucleotide phosphatase/kinase	IPR013954 (Polynucleotide kinase 3 phosphatase), IPR023214 (HAD-like domain)	
Niben101Scf03643g02031.1	sp|Q04716|RT03_PETHY	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf07247g05008.1	sp|Q8L9P8|RLF33_ARATH	***-	Protein RALF-like 33	IPR008801 (Rapid ALkalinization Factor)	
Niben101Scf06986g00014.1	ref|XP_002526322.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF36058.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05449g00008.1	sp|Q9JP87|CARA_RUBGI	****	Carbamoyl-phosphate synthase small chain	IPR006274 (Carbamoyl-phosphate synthase, small subunit), IPR029062 (Class I glutamine amidotransferase-like)	GO:0006543 (glutamine catabolic process), GO:0070409 (carbamoyl phosphate biosynthetic process)
Niben101Scf08762g00025.1	sp|Q86BE9|PEN2_DROME	*-*-	Gamma-secretase subunit pen-2	IPR019379 (Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit)	
Niben101Scf05135g01007.1	AT3G50120.1	***-	Plant protein of unknown function (DUF247) LENGTH=531	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf11515g01004.1	ref|XP_003610227.1|	*-*-	Ycf68 [Medicago truncatula]		
Niben101Scf04515g00007.1	ref|XP_006381591.1|	*-*-	senescence-associated family protein [Populus trichocarpa] gb|ERP59388.1| senescence-associated family protein [Populus trichocarpa]	IPR007650 (Zf-FLZ domain)	
Niben101Scf07314g04011.1	sp|P29056|TF3B_YEAST	--**	Transcription factor IIIB 70 kDa subunit	IPR000812 (Transcription factor TFIIB)	GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf00825g02018.1			Unknown protein		
Niben101Scf07714g00002.1	AT5G54010.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=453	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02093g05018.1	AT4G12830.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=393	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03373g04012.1	sp|Q9XEE2|ANXD2_ARATH	***-	Annexin D2	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf04286g00004.1	gb|AAU90336.1|	*-*-	F-box protein interaction domain containing protein [Solanum demissum]		
Niben101Scf00282g02013.1	AT5G62140.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 24 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=241		
Niben101Scf10232g03003.1	ref|XP_007046558.1|	--*-	AP2/B3 transcriptional factor family protein [Theobroma cacao] gb|EOX90715.1| AP2/B3 transcriptional factor family protein [Theobroma cacao]		
Niben101Scf02043g01002.1	AT3G10250.1	***-	Plant protein 1589 of unknown function LENGTH=324	IPR006476 (Conserved hypothetical protein CHP01589, plant)	
Niben101Scf04286g00002.1	emb|CDX95820.1|	*-*-	BnaC05g35710D [Brassica napus]		
Niben101Scf08391g03022.1	sp|Q07878|VPS13_YEAST	--*-	Vacuolar protein sorting-associated protein 13	IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf01671g00001.1	ref|WP_032546730.1|	--*-	stress protein [Vibrio splendidus]	IPR011008 (Dimeric alpha-beta barrel)	
Niben101Scf02074g07028.1	sp|P09003|MI25_TOBAC	****	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf02404g01007.1	sp|O59751|KLP6_SCHPO	*-**	Kinesin-like protein 6	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf07314g04013.1	AT4G35540.1	****	zinc ion binding;transcription regulators LENGTH=527	IPR000812 (Transcription factor TFIIB)	GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf08564g01005.1			Unknown protein		
Niben101Scf04764g07008.1			Unknown protein		
Niben101Scf08015g02003.1	sp|P45037|CCMF_HAEIN	--**	Cytochrome c-type biogenesis protein CcmF	IPR002541 (Cytochrome c assembly protein), IPR003567 (Cytochrome c-type biogenesis protein)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf00090g02002.1	AT1G49720.2	*-**	abscisic acid responsive element-binding factor 1 LENGTH=403	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Ctg04240g00002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05392g01019.1	sp|Q9LDR4|ERG24_ARATH	****	Delta(14)-sterol reductase	IPR001171 (Ergosterol biosynthesis ERG4/ERG24)	GO:0016020 (membrane), GO:0016628 (oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf11649g00002.1	sp|B9IIR5|CASP2_POPTR	--*-	Casparian strip membrane protein 2	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf03068g00020.1	sp|P07506|COX1_SOYBN	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01998g00001.1	sp|Q7RV88|IF4A_NEUCR	*-**	ATP-dependent RNA helicase eIF4A	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01515g07005.1			Unknown protein		
Niben101Scf02078g08027.1	sp|Q9LN71|RING1_ARATH	--*-	E3 ubiquitin-protein ligase	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01006g06008.1	sp|Q9LUE2|TPS18_ARATH	*-*-	Terpenoid synthase 18	IPR008949 (Isoprenoid synthase domain)	
Niben101Scf00747g01019.1			Unknown protein		
Niben101Scf04187g00019.1	ref|XP_002311419.1|	*-*-	armadillo/beta-catenin repeat family protein [Populus trichocarpa] gb|EEE88786.1| armadillo/beta-catenin repeat family protein [Populus trichocarpa]		
Niben101Scf11830g00010.1	AT2G07739.1	*-*-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf08724g00012.1	AT2G30020.1	****	Protein phosphatase 2C family protein LENGTH=396	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf03221g00013.1	AT3G21490.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=136	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf00869g06009.1	ref|XP_002517792.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF44599.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05201g05003.1	sp|Q9C635|HSFB4_ARATH	****	Heat stress transcription factor B-4	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00538g05002.1	sp|Q9FMR1|RGAP1_ARATH	***-	Rho GTPase-activating protein 1	IPR000095 (CRIB domain), IPR008936 (Rho GTPase activation protein)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf05963g00024.1	sp|Q9M2C0|VITH4_ARATH	*-*-	Vacuolar iron transporter homolog 4	IPR008217 (Ccc1 family)	
Niben101Scf00370g03003.1	AT1G54850.1	***-	HSP20-like chaperones superfamily protein LENGTH=206	IPR008978 (HSP20-like chaperone)	
Niben101Scf01787g00007.1			Unknown protein		
Niben101Scf06094g08011.1	AT1G05270.1	***-	TraB family protein LENGTH=371	IPR002816 (Pheromone shutdown, TraB)	
Niben101Scf08621g00010.1	gb|ABD78324.1|	***-	SLL1 protein [Primula vulgaris]		
Niben101Scf00953g06001.1	sp|Q4L6X5|SYD_STAHJ	****	Aspartate--tRNA ligase	IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0016874 (ligase activity)
Niben101Scf00263g01005.1	AT1G56440.2	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=494	IPR011990 (Tetratricopeptide-like helical domain), IPR025986 (RNA-polymerase II-associated protein 3-like, C-terminal domain)	GO:0005515 (protein binding)
Niben101Scf12154g01001.1	gb|ACG43350.1|	***-	SLT1 protein [Zea mays]	IPR008978 (HSP20-like chaperone)	
Niben101Scf02356g00013.1	gb|AAP54043.2|	-***	GRF zinc finger family protein, expressed [Oryza sativa Japonica Group] gb|EAZ16272.1| hypothetical protein OsJ_31732 [Oryza sativa Japonica Group]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00109g05003.1	sp|Q8LF89|GRXC8_ARATH	***-	Glutaredoxin-C8	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02191g02005.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf00305g05029.1	emb|CDY18244.1|	***-	BnaC05g02670D [Brassica napus]		
Niben101Scf18774g01005.1	gb|AES77964.2|	***-	WRKY transcription factor-like protein [Medicago truncatula]		
Niben101Scf00628g00005.1	emb|CDX84228.1|	--*-	BnaC04g09900D [Brassica napus]		
Niben101Scf00568g04002.1	sp|A6MM26|RPOC2_BUXMI	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf00870g06001.1	gb|AIW50127.1|	*-*-	erect panicle 2 protein, partial [Bothriochloa insculpta]		
Niben101Scf07001g01018.1	ref|XP_002522625.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF39712.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf13683g02007.1	AT3G57070.1	***-	Glutaredoxin family protein LENGTH=417	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf07508g03002.1	gb|KEH33302.1|	***-	YGL010w-like protein [Medicago truncatula]	IPR009305 (Protein of unknown function DUF962)	
Niben101Scf02537g02023.1	AT4G09010.1	****	ascorbate peroxidase 4 LENGTH=349	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01421g00011.1	sp|Q9LHI0|NDUA6_ARATH	***-	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6		
Niben101Scf01072g03042.1	sp|Q9JUU8|RLMB_NEIMA	--**	23S rRNA (guanosine-2'-O-)-methyltransferase RlmB	IPR029028 (Alpha/beta knot methyltransferases)	GO:0003723 (RNA binding), GO:0006396 (RNA processing), GO:0008173 (RNA methyltransferase activity)
Niben101Scf02907g06024.1	sp|Q9C778|ELP4_ARATH	****	Elongator complex protein 4	IPR008728 (Elongator complex protein 4), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0033588 (Elongator holoenzyme complex)
Niben101Scf10866g02011.1	sp|Q9ZUU0|WRK44_ARATH	*-**	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03702g04005.1	ref|XP_002512833.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF49336.1| conserved hypothetical protein [Ricinus communis]	IPR029338 (Tumour suppressing sub-chromosomal transferable candidate 4)	
Niben101Scf00885g07005.1	gb|AEB37528.1|	*-*-	TB1-like TCP family transcription factor [Helianthus annuus]	IPR005333 (Transcription factor, TCP)	
Niben101Scf00193g00017.1	sp|Q9AXQ5|IF5A2_SOLLC	*-**	Eukaryotic translation initiation factor 5A-2	IPR001884 (Translation elongation factor IF5A)	GO:0003723 (RNA binding), GO:0003746 (translation elongation factor activity), GO:0006452 (translational frameshifting), GO:0043022 (ribosome binding), GO:0045901 (positive regulation of translational elongation), GO:0045905 (positive regulation of translational termination)
Niben101Scf14009g01003.1	sp|Q9C5D2|FBL4_ARATH	***-	F-box/LRR-repeat protein 4	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Ctg08688g00001.1	sp|Q9SSK7|MLP34_ARATH	*-*-	MLP-like protein 34	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf00212g01002.1	sp|Q93VI8|TLP7_ARATH	***-	Tubby-like F-box protein 7	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf07253g00026.1	sp|Q9SY02|PP301_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01611g09002.1			Unknown protein		
Niben101Scf00953g01010.1	emb|CDY08019.1|	***-	BnaC03g35040D [Brassica napus]		
Niben101Scf03326g03006.1	AT5G16750.1	*-*-	Transducin family protein / WD-40 repeat family protein LENGTH=876	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Ctg14900g00003.1	sp|Q9SJB4|GDL34_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf12210g08015.1	sp|Q9FIB6|PS12A_ARATH	*-*-	26S proteasome non-ATPase regulatory subunit 12 homolog A		
Niben101Scf01727g08014.1	sp|Q09443|ARP6_CAEEL	--*-	Actin-like protein C08B11.6		
Niben101Scf03653g01025.1	sp|Q8BKC5|IPO5_MOUSE	***-	Importin-5	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Ctg15686g00001.1	AT1G16220.1	***-	Protein phosphatase 2C family protein LENGTH=491	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf02026g11001.1	sp|Q9ZCG1|NUOL_RICPR	*-**	NADH-quinone oxidoreductase subunit L	IPR018393 (NADH-plastoquinone oxidoreductase, chain 5 subgroup)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf02322g07005.1	ref|XP_003589266.1|	****	B3 domain-containing protein [Medicago truncatula] gb|AES59517.1| B3 DNA-binding domain protein [Medicago truncatula]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf02929g04036.1			Unknown protein		
Niben101Scf01543g06029.1	AT5G53130.1	****	cyclic nucleotide gated channel 1 LENGTH=716	IPR005821 (Ion transport domain), IPR014710 (RmlC-like jelly roll fold)	GO:0005216 (ion channel activity), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Ctg16346g00003.1	sp|Q9SDZ9|PPAF2_IPOBA	****	Purple acid phosphatase 2	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf16114g01003.1	sp|Q9LJP1|GRIP4_ARATH	*-*-	GDSL esterase/lipase 4	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf11103g02002.1	sp|P42669|PURA_MOUSE	***-	Transcriptional activator protein Pur-alpha	IPR006628 (PUR-alpha/beta/gamma, DNA/RNA-binding)	
Niben101Scf02066g03007.1	sp|P27898|MYBP_MAIZE	*-*-	Myb-related protein P	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf13316g00007.1	sp|Q9C9U3|DOX2_ARATH	***-	Alpha-dioxygenase 2	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06392g00003.1	ref|XP_002525169.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF37135.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04639g10009.1	sp|Q8S8M9|ALFL6_ARATH	*-*-	PHD finger protein ALFIN-LIKE 6	IPR021998 (Alfin)	GO:0006355 (regulation of transcription, DNA-templated), GO:0042393 (histone binding)
Niben101Scf06482g00017.1	ref|WP_015132655.1|	*-*-	NAD-dependent epimerase/dehydratase [Leptolyngbya sp. PCC 7376] ref|YP_007069705.1| NAD-dependent epimerase/dehydratase [Leptolyngbya sp. PCC 7376] gb|AFY36871.1| NAD-dependent epimerase/dehydratase [Leptolyngbya sp. PCC 7376]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf03283g04012.1	AT5G46800.1	***-	Mitochondrial substrate carrier family protein LENGTH=300	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf01487g04023.1			Unknown protein		
Niben101Scf09205g00008.1	sp|O04937|DHEA_NICPL	***-	Glutamate dehydrogenase A	IPR006095 (Glutamate/phenylalanine/leucine/valine dehydrogenase), IPR016040 (NAD(P)-binding domain)	GO:0006520 (cellular amino acid metabolic process), GO:0016491 (oxidoreductase activity), GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf19214g00004.1	AT3G55570.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=109		
Niben101Scf02280g01009.1	sp|Q4KM31|LIMD2_RAT	*-*-	LIM domain-containing protein 2	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf06726g00037.1	sp|Q92922|SMRC1_HUMAN	*-*-	SWI/SNF complex subunit SMARCC1	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0003677 (DNA binding), GO:0005515 (protein binding)
Niben101Scf02771g03014.1	ref|XP_010111480.1|	*-*-	ATP synthase subunit epsilon [Morus notabilis] gb|EXC31003.1| ATP synthase subunit epsilon [Morus notabilis]		
Niben101Scf07244g03019.1	AT3G58830.1	***-	haloacid dehalogenase (HAD) superfamily protein LENGTH=343	IPR010021 (HAD-superfamily phosphatase, YqeG-like), IPR023214 (HAD-like domain)	
Niben101Scf06208g00006.1	AT4G03550.1	****	glucan synthase-like 5 LENGTH=1780	IPR003440 (Glycosyl transferase, family 48), IPR026899 (1,3-beta-glucan synthase subunit FKS1-like, domain-1)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf01322g03021.1	AT2G44970.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=503	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Ctg10542g00003.1	sp|Q68EY7|C124A_XENLA	*-*-	Coiled-coil domain-containing protein 124-A	IPR010422 (Protein of unknown function DUF1014)	
Niben101Scf09523g03010.1	AT3G58830.1	***-	haloacid dehalogenase (HAD) superfamily protein LENGTH=343	IPR010021 (HAD-superfamily phosphatase, YqeG-like), IPR023214 (HAD-like domain)	
Niben101Scf08002g01013.1	gb|ABR25403.1|	****	transferase (transferring glycosyl group) [Oryza sativa Indica Group]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf12676g00017.1	emb|CDX86493.1|	*-*-	BnaC08g02100D [Brassica napus]		
Niben101Scf03360g01004.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf04819g02004.1	sp|Q58DI9|ARL11_BOVIN	*-*-	ADP-ribosylation factor-like protein 11	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf11621g01016.1			Unknown protein	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Ctg12537g00003.1	gb|KEH38305.1|	****	APO RNA-binding protein [Medicago truncatula]	IPR023342 (APO domain)	GO:0003723 (RNA binding)
Niben101Scf01587g02007.1	AT3G18620.1	****	DHHC-type zinc finger family protein LENGTH=345	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf02264g06012.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03026g09002.1	sp|C5M3V6|MIC60_CANTT	--*-	MICOS complex subunit MIC60	IPR019133 (Mitochondrial inner membrane protein Mitofilin)	
Niben101Scf01890g01005.1	sp|C3PAV1|CH60_BACAA	***-	60 kDa chaperonin	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding), GO:0042026 (protein refolding), GO:0044267 (cellular protein metabolic process)
Niben101Scf12245g00001.1	AT4G32820.2	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=1872		
Niben101Scf00536g04008.1	sp|Q9FIE3|VIN3_ARATH	*-*-	Protein VERNALIZATION INSENSITIVE 3		
Niben101Scf03257g04007.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf00560g06005.1	AT5G36130.1	*-*-	Cytochrome P450 superfamily protein LENGTH=140	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00530g06012.1	sp|Q03065|RPSB_NOSS1	****	RNA polymerase sigma-B factor	IPR014284 (RNA polymerase sigma-70 like domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Ctg10923g00001.1	sp|Q9FYH7|VSR6_ARATH	*-*-	Vacuolar-sorting receptor 6		
Niben101Scf01911g04010.1	AT5G60700.1	*-*-	glycosyltransferase family protein 2 LENGTH=668	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf04526g04004.1	gb|AAG37451.1|	***-	seed maturation protein LEA 4 [Glycine tomentella]	IPR005513 (Late embryogenesis abundant protein, LEA-25/LEA-D113)	GO:0009790 (embryo development)
Niben101Scf00283g01007.1	ref|WP_009711216.1|	***-	SAM-dependent methyltransferase [Desmospora sp. 8437] gb|EGK08912.1| rRNA methylase [Desmospora sp. 8437]	IPR010719 (Putative rRNA methylase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf14883g00006.1	sp|Q8L709|CHX28_ARATH	****	Cation/H(+) antiporter 28	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01317g02005.1	sp|Q84T94|P2C35_ORYSJ	***-	Protein phosphatase 2C 35	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf03850g01005.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg14785g00001.1	sp|Q9FNM7|RH26_ARATH	--*-	DEAD-box ATP-dependent RNA helicase 26		
Niben101Scf17140g00013.1	sp|Q9LI00|6PGD1_ORYSJ	*-**	6-phosphogluconate dehydrogenase, decarboxylating 1	IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050661 (NADP binding), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01276g02009.1			Unknown protein		
Niben101Scf01375g06003.1	sp|Q39649|2SS_CUCMA	--*-	2S albumin	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Ctg11437g00002.1	sp|A8M7W9|MIAA_SALAI	****	tRNA dimethylallyltransferase	IPR002627 (tRNA isopentenyltransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf05954g02021.1	sp|O04274|LDOX_PERFR	*-*-	Leucoanthocyanidin dioxygenase	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf01623g18003.1	sp|A4VJN9|MUTS_PSEU5	*-**	DNA mismatch repair protein MutS	IPR000432 (DNA mismatch repair protein MutS, C-terminal), IPR002999 (Tudor domain), IPR007695 (DNA mismatch repair protein MutS-like, N-terminal), IPR007696 (DNA mismatch repair protein MutS, core), IPR007860 (DNA mismatch repair protein MutS, connector domain), IPR015536 (DNA mismatch repair protein MutS-homologue MSH6), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf07937g02011.1	sp|Q8BGK5|S35F1_MOUSE	***-	Solute carrier family 35 member F1	IPR009262 (Solute carrier family 35 member SLC35F1/F2/F6)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf02115g02001.1	emb|CDX70368.1|	***-	BnaC03g04520D [Brassica napus]	IPR009769 (Domain of unknown function DUF1336)	
Niben101Scf04629g03012.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf03628g01009.1	AT4G09620.1	****	Mitochondrial transcription termination factor family protein LENGTH=212	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02253g05009.1			Unknown protein		
Niben101Scf00361g04003.1	sp|Q02084|A33_PLEWA	--**	Zinc-binding protein A33	IPR001878 (Zinc finger, CCHC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR014891 (DWNN domain)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf23355g00004.1	sp|Q8XSF6|MNTH_RALSO	*-**	Divalent metal cation transporter MntH	IPR001046 (NRAMP family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02480g01009.1			Unknown protein		
Niben101Scf03766g05009.1	AT3G27270.1	***-	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein LENGTH=249	IPR006634 (TRAM/LAG1/CLN8 homology domain)	GO:0016021 (integral component of membrane)
Niben101Scf00480g00002.1	AT1G71500.1	***-	Rieske (2Fe-2S) domain-containing protein LENGTH=287	IPR017941 (Rieske [2Fe-2S] iron-sulphur domain), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0016491 (oxidoreductase activity), GO:0051537 (2 iron, 2 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11361g02028.1	sp|P06004|PSBC_PEA	--*-	Photosystem II CP43 reaction center protein		
Niben101Scf04233g01019.1	sp|Q41931|ACCO2_ARATH	--*-	1-aminocyclopropane-1-carboxylate oxidase 2	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf04335g00003.1	AT1G61870.1	***-	pentatricopeptide repeat 336 LENGTH=408	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03964g02001.1	sp|O22918|GDL41_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf13103g01033.1	sp|Q9CQ79|TXND9_MOUSE	*-*-	Thioredoxin domain-containing protein 9	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf01396g05005.1	sp|O80536|PIF3_ARATH	*-*-	Transcription factor PIF3	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf16022g02001.1	sp|Q61ZF6|GBB1_CAEBR	*-**	Guanine nucleotide-binding protein subunit beta-1	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf06761g00020.1	emb|CDX87093.1|	***-	BnaC09g04080D [Brassica napus]		
Niben101Scf13874g01006.1	AT5G13710.1	****	sterol methyltransferase 1 LENGTH=336	IPR013705 (Sterol methyltransferase C-terminal), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006694 (steroid biosynthetic process), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf00328g07006.1	sp|O81154|CYSK_SOLTU	****	Cysteine synthase	IPR005856 (Cysteine synthase K/M)	GO:0004124 (cysteine synthase activity), GO:0006535 (cysteine biosynthetic process from serine)
Niben101Scf09554g01006.1	sp|Q9MAB9|MUB1_ARATH	***-	Membrane-anchored ubiquitin-fold protein 1	IPR017000 (Membrane-anchored ubiquitin-fold protein, HCG-1), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf07163g02006.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf09172g02018.1	AT4G16580.1	***-	Protein phosphatase 2C family protein LENGTH=467	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf00895g00005.1	gb|AEW48209.1|	--*-	disease resistance protein RGH5 [Solanum huancabambense]		
Niben101Scf10940g04023.1	AT5G43830.1	***-	Aluminium induced protein with YGL and LRDR motifs LENGTH=251	IPR024286 (Domain of unknown function DUF3700), IPR029055 (Nucleophile aminohydrolases, N-terminal)	
Niben101Scf00770g02003.1	gb|AIF76113.1|	****	cytochrome c biogenesis B, partial (mitochondrion) [Halodule pinifolia]	IPR003544 (Cytochrome c-type biogenesis protein CcmB)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf04639g12011.1	dbj|BAF02600.1|	***-	RNA ligase isoform 3 [Triticum aestivum]		
Niben101Scf11621g00007.1	AT2G21210.1	***-	SAUR-like auxin-responsive protein family LENGTH=98	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03067g00001.1	sp|Q9LZX8|BIG2_ARATH	*-*-	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04629g02009.1	emb|CBM56257.1|	****	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02908g02001.1	sp|Q8TUT0|VATB_METKA	*-**	V-type ATP synthase beta chain	IPR004100 (ATPase, F1 complex alpha/beta subunit, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0015992 (proton transport), GO:0046034 (ATP metabolic process)
Niben101Scf05035g04001.1	AT3G24460.1	***-	Serinc-domain containing serine and sphingolipid biosynthesis protein LENGTH=409	IPR005016 (Serine incorporator/TMS membrane protein)	GO:0016020 (membrane)
Niben101Scf01671g06004.1	sp|P81395|MYB30_ANTMA	--*-	Myb-related protein 330	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf17749g00008.1	gb|ACX55038.1|	*-*-	pG1 protein [Bacillus amyloliquefaciens]		
Niben101Scf03534g00006.1	sp|Q9XIJ5|PUB18_ARATH	***-	U-box domain-containing protein 18	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf01687g03004.1	sp|Q9LSL9|PP445_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf11944g00019.1	sp|Q93V47|GG2_ARATH	***-	Guanine nucleotide-binding protein subunit gamma 2	IPR015898 (G-protein gamma-like domain)	
Niben101Scf14136g00009.1	sp|Q8H157|PTR19_ARATH	***-	Protein NRT1/ PTR FAMILY 4.6	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00104g02013.1	sp|Q8W104|FBL17_ARATH	***-	F-box/LRR-repeat protein 17	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05914g00001.1	tpg|DAA48790.1|	*-*-	TPA: MTD1 [Zea mays]		
Niben101Scf14755g00001.1	AT5G14470.1	***-	GHMP kinase family protein LENGTH=366	IPR013750 (GHMP kinase, C-terminal domain), IPR020568 (Ribosomal protein S5 domain 2-type fold)	
Niben101Scf04141g01002.1	gb|AES65580.2|	*-*-	organic solute transporter ostalpha protein [Medicago truncatula]	IPR005178 (Organic solute transporter subunit alpha/Transmembrane protein 184)	
Niben101Scf00366g10005.1	sp|Q5R580|ZRAB2_PONAB	*-**	Zinc finger Ran-binding domain-containing protein 2	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf04674g02018.1	sp|A8AJF8|RIHA_CITK8	*-*-	Pyrimidine-specific ribonucleoside hydrolase RihA	IPR001910 (Inosine/uridine-preferring nucleoside hydrolase domain), IPR023186 (Inosine/uridine-preferring nucleoside hydrolase)	
Niben101Scf03045g04008.1	emb|CDY44160.1|	***-	BnaA09g30920D [Brassica napus]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf02271g03001.1	sp|P10967|ACCH3_SOLLC	***-	1-aminocyclopropane-1-carboxylate oxidase homolog	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00905g04004.1			Unknown protein		
Niben101Scf00679g05002.1	sp|Q43735|PER27_ARATH	*-**	Peroxidase 27	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05387g06001.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04950g07003.1	gb|AHD24760.1|	*-*-	Ycf1, partial (chloroplast) [Solanum cochabambense]		
Niben101Scf09310g01004.1	AT3G13460.1	*-*-	evolutionarily conserved C-terminal region 2 LENGTH=667	IPR007275 (YTH domain)	
Niben101Scf11737g00024.1	sp|Q9EZ02|PFP_SPITD	***-	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase	IPR000023 (Phosphofructokinase domain), IPR013981 (Pyrophosphate-dependent phosphofructokinase, alpha-helical domain)	GO:0003872 (6-phosphofructokinase activity), GO:0006096 (glycolytic process)
Niben101Scf06301g03008.1			Unknown protein		
Niben101Scf03861g00009.1	sp|Q9LE15|PER4_ARATH	****	Peroxidase 4	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06361g08006.1	AT5G10080.1	***-	Eukaryotic aspartyl protease family protein LENGTH=528	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf07325g00003.1	sp|Q9FNP8|RS193_ARATH	***-	40S ribosomal protein S19-3	IPR001266 (Ribosomal protein S19e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06388g03004.1	AT5G03490.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=465	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04172g04019.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04627g02004.1	sp|Q54JJ3|ARFH_DICDI	*-*-	ADP-ribosylation factor H	IPR003579 (Small GTPase superfamily, Rab type), IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf07953g02010.1	sp|Q6K5F8|CDKG1_ORYSJ	*-**	Cyclin-dependent kinase G-1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00946g00013.1	sp|Q9SV21|COPB1_ARATH	***-	Coatomer subunit beta-1	IPR016460 (Coatomer beta subunit (COPB1)), IPR029446 (Coatomer beta subunit, appendage platform domain)	GO:0005198 (structural molecule activity), GO:0005488 (binding), GO:0005737 (cytoplasm), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030126 (COPI vesicle coat)
Niben101Scf00072g07005.1	sp|Q74IV9|METN_LACJO	****	Methionine import ATP-binding protein MetN	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf06684g02013.1	sp|Q9SUT2|PER39_ARATH	*-**	Peroxidase 39	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02558g00020.1	sp|P62980|RS27A_SOLLC	*-*-	Ubiquitin-40S ribosomal protein S27a	IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02300g00023.1	sp|O97159|CHDM_DROME	*-**	Chromodomain-helicase-DNA-binding protein Mi-2 homolog	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf07778g03024.1	gb|KEH41857.1|	*-*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf00225g00006.1	sp|Q9FR99|ACCO_MUSAC	*-*-	1-aminocyclopropane-1-carboxylate oxidase	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02751g05011.1	dbj|BAC99641.1|	***-	transporter-like protein [Oryza sativa Japonica Group]	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01005g05015.1	sp|Q9FL33|MCM3_ARATH	*-**	DNA replication licensing factor MCM3	IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006260 (DNA replication)
Niben101Scf06674g02003.1	sp|P13934|LEA76_BRANA	--*-	Late embryogenesis abundant protein 76		
Niben101Scf10737g00025.1	sp|Q9LVQ0|PME31_ARATH	****	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf03777g00005.1	sp|Q5ZUQ7|GATA_LEGPH	*-*-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf01089g01016.1	sp|Q803I2|ERGI3_DANRE	***-	Endoplasmic reticulum-Golgi intermediate compartment protein 3	IPR012936 (Endoplasmic reticulum vesicle transporter, C-terminal)	
Niben101Scf01669g04023.1	sp|Q22888|IF4E4_CAEEL	****	Eukaryotic translation initiation factor 4E-4	IPR001040 (Translation Initiation factor eIF- 4e), IPR023398 (Translation Initiation factor eIF- 4e-like  domain)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0006413 (translational initiation)
Niben101Scf04240g00007.1	sp|Q9NQW7|XPP1_HUMAN	***-	Xaa-Pro aminopeptidase 1	IPR000994 (Peptidase M24, structural domain), IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	GO:0016787 (hydrolase activity)
Niben101Scf01326g01020.1	AT5G39785.2	*-*-	Protein of unknown function (DUF1666) LENGTH=607	IPR008195 (Ribosomal protein L34Ae), IPR012870 (Protein of unknown function DUF1666)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07680g00001.1	sp|Q54TT4|COG3_DICDI	*-**	Conserved oligomeric Golgi complex subunit 3	IPR007265 (Conserved oligomeric Golgi complex, subunit 3)	GO:0005801 (cis-Golgi network), GO:0006886 (intracellular protein transport), GO:0016020 (membrane)
Niben101Scf04869g01008.1	AT3G26310.1	***-	cytochrome P450, family 71, subfamily B, polypeptide 35 LENGTH=500	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08020g05010.1	gb|KEH32283.1|	***-	late embryogenesis abundant protein [Medicago truncatula]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf03989g02013.1	gb|AET02817.2|	*-*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf02197g04007.1	sp|Q9XI07|SWI3C_ARATH	***-	SWI/SNF complex subunit SWI3C	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf07533g02012.1	sp|Q9SJB4|GDL34_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04114g00069.1	sp|Q54JC8|PUR4_DICDI	*-*-	Phosphoribosylformylglycinamidine synthase	IPR016188 (PurM, N-terminal-like)	GO:0003824 (catalytic activity)
Niben101Scf00503g04004.1			Unknown protein		
Niben101Scf04871g08010.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02929g05031.1			Unknown protein		
Niben101Scf22773g00012.1			Unknown protein		
Niben101Scf03562g03006.1	sp|Q93VV5|PTR16_ARATH	***-	Protein NRT1/ PTR FAMILY 4.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01237g05013.1			Unknown protein		
Niben101Scf00080g04008.1			Unknown protein		
Niben101Scf04011g00006.1	sp|P14232|TGA1A_TOBAC	****	TGACG-sequence-specific DNA-binding protein TGA-1A	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf33214g00006.1	sp|O97159|CHDM_DROME	--**	Chromodomain-helicase-DNA-binding protein Mi-2 homolog	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf10055g06007.1	AT4G19420.1	***-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf00270g04011.1	sp|Q91WC9|DGLB_MOUSE	*-*-	Sn1-specific diacylglycerol lipase beta	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf00724g00004.1			Unknown protein		
Niben101Scf04703g11014.1	AT4G00110.1	****	UDP-D-glucuronate 4-epimerase 3 LENGTH=430	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf00557g03003.1	gb|AES63432.2|	--*-	replication factor-A carboxy-terminal domain protein [Medicago truncatula]		
Niben101Scf01497g03022.1	AT4G35720.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=325	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf02246g01015.1	sp|O22703|RZ1B_ARATH	*-*-	Glycine-rich RNA-binding protein RZ1B		
Niben101Scf10713g00018.1	sp|Q8K3K9|GIMA4_RAT	*-*-	GTPase IMAP family member 4	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf01579g01018.1	AT2G39570.1	***-	ACT domain-containing protein LENGTH=411		
Niben101Scf01434g02003.1			Unknown protein		
Niben101Scf11844g02010.1	sp|Q9JX92|NUOL_NEIMA	*-**	NADH-quinone oxidoreductase subunit L	IPR018393 (NADH-plastoquinone oxidoreductase, chain 5 subgroup)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf08936g04011.1	AT5G51140.2	****	Pseudouridine synthase family protein LENGTH=410	IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf00341g09020.1	sp|Q42534|PME2_ARATH	--*-	Pectinesterase 2	IPR011050 (Pectin lyase fold/virulence factor)	
Niben101Scf10055g05004.1	sp|Q0U7W4|CCR4_PHANO	*-*-	Glucose-repressible alcohol dehydrogenase transcriptional effector	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf18745g01027.1	AT1G66510.1	*-*-	AAR2 protein family LENGTH=399	IPR007946 (A1 cistron-splicing factor, AAR2)	
Niben101Scf10667g00002.1	sp|Q38898|AKT2_ARATH	*-*-	Potassium channel AKT2/3	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf04119g02014.1	sp|Q8L7G0|ARFA_ARATH	****	Auxin response factor 1	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf05329g06011.1	gb|ADR30790.1|	***-	hypoia-responsive family protein 1 [Hevea brasiliensis]	IPR007667 (Hypoxia induced protein, domain)	
Niben101Scf12639g01007.1	AT2G26130.1	*-**	RING/U-box protein with C6HC-type zinc finger LENGTH=398	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf06203g05019.1	sp|Q9SXD8|PPR90_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04703g11013.1	sp|Q8Y0Y6|AROA_RALSO	****	3-phosphoshikimate 1-carboxyvinyltransferase	IPR006264 (3-phosphoshikimate 1-carboxyvinyltransferase), IPR013792 (RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta), IPR023193 (3-phosphoshikimate 1-carboxyvinyltransferase, conserved site)	GO:0003824 (catalytic activity), GO:0003866 (3-phosphoshikimate 1-carboxyvinyltransferase activity), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf05369g00007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04287g04008.1			Unknown protein		
Niben101Scf00812g01008.1	sp|Q8LG03|FB345_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf03595g18003.1	AT1G65730.1	***-	YELLOW STRIPE like 7 LENGTH=688	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf06825g02004.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Ctg12327g00002.1	sp|Q14181|DPOA2_HUMAN	*-*-	DNA polymerase alpha subunit B		
Niben101Scf08333g07030.1	AT3G57050.1	****	cystathionine beta-lyase LENGTH=464	IPR000277 (Cys/Met metabolism, pyridoxal phosphate-dependent enzyme), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004121 (cystathionine beta-lyase activity), GO:0030170 (pyridoxal phosphate binding), GO:0071266 ('de novo' L-methionine biosynthetic process)
Niben101Scf01386g00002.1			Unknown protein		
Niben101Scf02014g00036.1	sp|Q10NX8|BGAL6_ORYSJ	*-*-	Beta-galactosidase 6	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01166g15001.1			Unknown protein		
Niben101Scf13458g00001.1			Unknown protein		
Niben101Scf01406g03020.1	sp|P52551|MYBB_XENLA	*-*-	Myb-related protein B	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06734g01021.1	gb|AGN52025.1|	--*-	MYB-related transcription factor [Salvia miltiorrhiza]		
Niben101Scf02597g04002.1	AT1G21600.1	***-	plastid transcriptionally active 6 LENGTH=328		
Niben101Scf01002g13006.1	AT1G78870.1	***-	ubiquitin-conjugating enzyme 35 LENGTH=154	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf04205g02004.1	sp|Q9H9S4|CB39L_HUMAN	****	Calcium-binding protein 39-like	IPR013878 (Mo25-like)	GO:0005488 (binding)
Niben101Scf04923g00001.1			Unknown protein		
Niben101Scf03085g05002.1	AT5G13710.1	****	sterol methyltransferase 1 LENGTH=336	IPR013705 (Sterol methyltransferase C-terminal), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006694 (steroid biosynthetic process), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf01616g04004.1	sp|A8GLB1|FIEF_SERP5	-***	Cation-efflux pump FieF	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain), IPR027470 (Cation efflux protein cytoplasmic domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00288g18014.1	sp|Q8SPU8|DHRS4_BOVIN	*-**	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf07346g04001.1	sp|Q9FH80|BAM8_ARATH	****	Beta-amylase 8	IPR001554 (Glycoside hydrolase, family 14), IPR008540 (BZR1, transcriptional repressor), IPR017853 (Glycoside hydrolase superfamily)	GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity)
Niben101Scf02318g06014.1	emb|CDX98526.1|	-**-	BnaC05g38490D [Brassica napus]		
Niben101Scf06683g01002.1	sp|Q7NZU6|MSBA_CHRVO	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf02601g07014.1	AT5G35450.1	*-*-	Disease resistance protein (CC-NBS-LRR class) family LENGTH=901		
Niben101Scf20037g00022.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf11143g00010.1	emb|CDY18467.1|	***-	BnaA04g21200D [Brassica napus]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Ctg16458g00005.1			Unknown protein		
Niben101Scf01082g02030.1	sp|Q1PEU4|PP201_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf04485g02019.1	sp|Q8W4J9|RPP8_ARATH	--*-	Disease resistance protein RPP8	IPR010989 (t-SNARE), IPR012351 (Four-helical cytokine, core)	GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf04296g00008.1	sp|O80742|PUB19_ARATH	***-	U-box domain-containing protein 19	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf00854g07034.1			Unknown protein		
Niben101Scf03747g04002.1	sp|P51824|ARF1_SOLTU	***-	ADP-ribosylation factor 1	IPR003579 (Small GTPase superfamily, Rab type), IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf01333g00005.1	gb|ACN85259.1|	****	calcium ion binding protein [Oryza alta]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03488g09008.1	sp|P49098|CYB5_TOBAC	***-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf22195g00024.1	AT5G36740.1	*-**	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein LENGTH=1179	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008080 (N-acetyltransferase activity), GO:0008270 (zinc ion binding)
Niben101Scf05776g01029.1	sp|Q27RY7|YCF2_SOLTU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf05579g02001.1			Unknown protein		
Niben101Scf05669g02026.1	AT1G42430.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=426		
Niben101Scf01721g09002.1	sp|Q84MA5|CAAT1_ARATH	****	Cationic amino acid transporter 1	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf08200g05012.1			Unknown protein	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf03114g01016.1	sp|Q9LT91|PER66_ARATH	****	Peroxidase 66	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01310g04010.1	sp|O65874|MTF1_PEA	*-**	MADS-box transcription factor 1	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf14338g03007.1	gb|AAB01558.1|	--*-	late embryogenesis abundant protein [Picea glauca]		
Niben101Scf09475g01020.1	sp|Q8T277|PRKAG_DICDI	***-	5'-AMP-activated protein kinase subunit gamma	IPR000644 (CBS domain)	
Niben101Scf02302g01001.1	sp|Q9SWB4|PARP3_SOYBN	***-	Poly [ADP-ribose] polymerase 3	IPR001357 (BRCT domain), IPR004102 (Poly(ADP-ribose) polymerase, regulatory domain), IPR008893 (WGR domain), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR012982 (PADR1)	GO:0003950 (NAD+ ADP-ribosyltransferase activity), GO:0005634 (nucleus), GO:0006471 (protein ADP-ribosylation)
Niben101Scf00530g09006.1	AT5G53130.1	****	cyclic nucleotide gated channel 1 LENGTH=716	IPR005821 (Ion transport domain), IPR014710 (RmlC-like jelly roll fold)	GO:0005216 (ion channel activity), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01460g04003.1	sp|Q8N0Z6|TTC5_HUMAN	*-*-	Tetratricopeptide repeat protein 5		
Niben101Scf04609g00013.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02830g02026.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01305g02005.1	sp|Q4WKB9|CWC22_ASPFU	*-*-	Pre-mRNA-splicing factor cwc22	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00747g05004.1			Unknown protein		
Niben101Scf11535g01025.1	AT1G04090.1	***-	Plant protein of unknown function (DUF946) LENGTH=572	IPR009291 (Vacuolar protein sorting-associated protein 62)	
Niben101Scf01214g02010.1	gb|AEW48209.1|	*-*-	disease resistance protein RGH5 [Solanum huancabambense]		
Niben101Scf09310g01005.1			Unknown protein		
Niben101Scf09112g03010.1	sp|P49039|SUS2_SOLTU	*-*-	Sucrose synthase	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf05177g03016.1			Unknown protein		
Niben101Scf01250g05001.1	sp|Q9LR69|PPR8_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00905g04005.1			Unknown protein		
Niben101Scf05030g02008.1	AT4G25250.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=199	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf08249g02002.1	AT5G51180.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=357	IPR007751 (Domain of unknown function DUF676, lipase-like), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02145g09007.1	AT5G42570.1	****	B-cell receptor-associated 31-like LENGTH=218	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf18822g02016.1	sp|Q84KG5|CCD_CROSA	***-	Carotenoid 9,10(9',10')-cleavage dioxygenase	IPR004294 (Carotenoid oxygenase)	
Niben101Scf01812g03004.1	AT5G32450.1	****	RNA binding (RRM/RBD/RNP motifs) family protein LENGTH=267	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01785g03015.1	sp|O74970|PRP39_SCHPO	*-*-	Pre-mRNA-processing factor 39		
Niben101Scf02922g02001.1	AT1G63340.1	****	Flavin-containing monooxygenase family protein LENGTH=424	IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09629g00013.1	sp|Q9SH60|PP103_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01718g01001.1	sp|A4W577|GHRB_ENT38	****	Glyoxylate/hydroxypyruvate reductase B	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01642g00018.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf01816g00009.1	sp|B1LVH1|ATPA_METRJ	****	ATP synthase subunit alpha	IPR005294 (ATPase, F1 complex, alpha subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf03287g00021.1	sp|B1JH01|GHRB_YERPY	****	Glyoxylate/hydroxypyruvate reductase B	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain), IPR029752 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf33567g00005.1	AT1G68910.1	***-	WPP domain-interacting protein 2 LENGTH=627		
Niben101Scf02972g06009.1	AT4G24060.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=342	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02997g00004.1	sp|Q9SLK6|ALA6_ARATH	****	Phospholipid-transporting ATPase 6	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf03781g00001.1	sp|Q38922|RAB1B_ARATH	--*-	Ras-related protein RABB1b		
Niben101Scf00110g00006.1	ref|XP_010089235.1|	*-*-	U-box domain-containing protein 43 [Morus notabilis] gb|EXB37533.1| U-box domain-containing protein 43 [Morus notabilis]		
Niben101Scf09698g00004.1	sp|Q5SPP5|EFR3B_DANRE	*-*-	Protein EFR3 homolog B	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf11299g00016.1	ref|NP_001149735.1|	*-*-	AAA ATPase containing von Willebrand factor type A precursor [Zea mays] gb|ACG36602.1| AAA ATPase containing von Willebrand factor type A [Zea mays]	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00953g03008.1	sp|Q7YT83|TX31_CONTE	*-*-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf03340g04012.1	sp|Q3SWX0|NIPA2_BOVIN	****	Magnesium transporter NIPA2	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf13622g00006.1	sp|Q92576|PHF3_HUMAN	--*-	PHD finger protein 3	IPR001025 (Bromo adjacent homology (BAH) domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf13099g00014.1	AT3G24140.1	*-*-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=414	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03753g00018.1	sp|Q38890|GUN25_ARATH	***-	Endoglucanase 25	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05961g03026.1	gb|KEH39496.1|	****	Myb-like DNA-binding domain protein [Medicago truncatula]	IPR009057 (Homeodomain-like), IPR022228 (Protein of unknown function DUF3755)	GO:0003677 (DNA binding)
Niben101Scf09315g01019.1	sp|P60039|RL73_ARATH	*-*-	60S ribosomal protein L7-3	IPR012988 (Ribosomal protein L30, N-terminal), IPR016082 (Ribosomal protein L30, ferredoxin-like fold domain)	
Niben101Scf05811g02024.1	AT5G05830.1	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=204	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf01383g07027.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf11767g01009.1	sp|B1KWM4|EFTS_CLOBM	****	Elongation factor Ts	IPR001816 (Translation elongation factor EFTs/EF1B)	GO:0003746 (translation elongation factor activity), GO:0005622 (intracellular), GO:0006414 (translational elongation)
Niben101Scf02510g03004.1	sp|P46270|QCR9_SOLTU	****	Cytochrome b-c1 complex subunit 9	IPR008027 (Cytochrome b-c1 complex subunit 9)	GO:0005743 (mitochondrial inner membrane), GO:0005750 (mitochondrial respiratory chain complex III), GO:0006122 (mitochondrial electron transport, ubiquinol to cytochrome c)
Niben101Scf08537g02011.1	sp|F4K0A6|MYO2_ARATH	*-**	Myosin-2	IPR000048 (IQ motif, EF-hand binding site), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf11823g00012.1	sp|A5PJN8|SF3A2_BOVIN	*-*-	Splicing factor 3A subunit 2	IPR003604 (Zinc finger, U1-type), IPR019134 (Cactin, C-terminal)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf00687g04012.1			Unknown protein		
Niben101Scf05295g01003.1	sp|Q9SAK5|APL_ARATH	***-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00693g00008.1	sp|Q8CIB6|TM230_MOUSE	***-	Transmembrane protein 230	IPR008590 (Protein of unknown function DUF872, transmembrane)	
Niben101Scf04489g00025.1	AT4G21380.1	****	receptor kinase 3 LENGTH=850	IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf23355g00003.1	AT2G28260.1	***-	cyclic nucleotide-gated channel 15 LENGTH=678	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf02819g00005.1	sp|Q9SK27|ENL1_ARATH	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf01203g01002.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08260g00002.1	sp|Q9ZPR4|MRS25_ARATH	****	Magnesium transporter MRS2-5	IPR002523 (Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB), IPR026573 (Magnesium transporter MRS2/LPE10)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03145g07011.1	sp|Q39265|ZFP6_ARATH	--*-	Zinc finger protein 6	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf12210g01001.1	sp|Q9BQ70|TCF25_HUMAN	*-*-	Transcription factor 25	IPR006994 (Transcription factor 25)	
Niben101Scf02344g06023.1	sp|O16102|CHD3_DROME	*-**	Chromodomain-helicase-DNA-binding protein 3	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR025766 (ADD domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf05278g01016.1	sp|Q9SVP7|PP307_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03766g05008.1	sp|Q9LK24|FB327_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf03231g00007.1	gb|AAD50291.1|AF172263_1	--**	abscisic acid response protein [Prunus dulcis]	IPR000167 (Dehydrin)	GO:0006950 (response to stress), GO:0009415 (response to water)
Niben101Scf03659g08009.1	AT2G21590.1	****	Glucose-1-phosphate adenylyltransferase family protein LENGTH=523	IPR011004 (Trimeric LpxA-like), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0005978 (glycogen biosynthetic process), GO:0008878 (glucose-1-phosphate adenylyltransferase activity), GO:0009058 (biosynthetic process), GO:0016779 (nucleotidyltransferase activity)
Niben101Scf10498g01010.1	AT3G20920.1	*-*-	translocation protein-related LENGTH=365		
Niben101Scf10085g01016.1	AT1G18265.1	*-*-	Protein of unknown function, DUF593 LENGTH=280	IPR007656 (Zein-binding domain)	
Niben101Scf03634g04003.1	AT2G03430.1	*-*-	Ankyrin repeat family protein LENGTH=240	IPR008962 (PapD-like), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf09973g00012.1	AT5G59020.1	*-*-	Protein of unknown function (DUF3527) LENGTH=780	IPR021916 (Protein of unknown function DUF3527)	
Niben101Scf15203g00004.1	sp|Q9ZVR1|PP2B5_ARATH	***-	F-box protein PP2-B5	IPR025886 (Phloem protein 2-like)	
Niben101Scf01937g02005.1	sp|Q8YWD8|MSRA2_NOSS1	****	Peptide methionine sulfoxide reductase MsrA 2	IPR002569 (Peptide methionine sulphoxide reductase MsrA), IPR028427 (Peptide methionine sulfoxide reductase)	GO:0006979 (response to oxidative stress), GO:0008113 (peptide-methionine (S)-S-oxide reductase activity), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0030091 (protein repair), GO:0055114 (oxidation-reduction process)
Niben101Scf03257g04006.1	sp|Q93VV5|PTR16_ARATH	***-	Protein NRT1/ PTR FAMILY 4.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf09620g00005.1	sp|Q9LFC5|PP360_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf14012g01003.1	sp|B7IYH2|LEPA_BACC2	***-	Elongation factor 4	IPR005225 (Small GTP-binding protein domain), IPR006297 (Elongation factor 4), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf06926g05005.1			Unknown protein		
Niben101Scf01061g01003.1	sp|Q9Y666|S12A7_HUMAN	***-	Solute carrier family 12 member 7	IPR004841 (Amino acid permease/ SLC12A domain)	GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02237g09042.1	sp|Q96N64|PWP2A_HUMAN	*-*-	PWWP domain-containing protein 2A	IPR000313 (PWWP domain)	
Niben101Scf00783g03001.1	ref|XP_003627123.1|	--*-	EPIDERMAL PATTERNING FACTOR-like protein [Medicago truncatula]		
Niben101Scf05468g02017.1			Unknown protein		
Niben101Scf07199g01007.1	sp|Q56WF8|SCP48_ARATH	****	Serine carboxypeptidase-like 48	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01982g01009.1	sp|O95208|EPN2_HUMAN	*-*-	Epsin-2	IPR008942 (ENTH/VHS)	
Niben101Scf10015g07003.1	sp|Q51876|LEP_PHOLA	*-**	Signal peptidase I	IPR000223 (Peptidase S26A, signal peptidase I), IPR015927 (Peptidase S24/S26A/S26B/S26C), IPR028360 (Peptidase S24/S26, beta-ribbon domain)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane)
Niben101Scf05811g00003.1	gb|ADK13066.1|	***-	conserved hypothetical protein 9 [Hevea brasiliensis]		
Niben101Scf00305g00008.1	AT4G36600.1	***-	Late embryogenesis abundant (LEA) protein LENGTH=353	IPR004238 (Late embryogenesis abundant protein, LEA-3)	
Niben101Scf05135g04001.1	sp|P44965|DUSB_HAEIN	*-**	tRNA-dihydrouridine synthase B	IPR001269 (tRNA-dihydrouridine synthase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008033 (tRNA processing), GO:0017150 (tRNA dihydrouridine synthase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02411g00007.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain), IPR013227 (PAN-2 domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05668g02004.1	sp|Q1RMU3|P4HA1_BOVIN	*-*-	Prolyl 4-hydroxylase subunit alpha-1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02155g02007.1	sp|P0DI74|S61G1_ARATH	****	Protein transport protein Sec61 subunit gamma-1	IPR001901 (Protein translocase complex, SecE/Sec61-gamma subunit), IPR023391 (Protein translocase SecE domain)	GO:0006605 (protein targeting), GO:0006886 (intracellular protein transport), GO:0015031 (protein transport), GO:0015450 (P-P-bond-hydrolysis-driven protein transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf02280g04003.1	AT5G05710.1	***-	Pleckstrin homology (PH) domain superfamily protein LENGTH=144	IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf01683g07007.1	sp|Q3MJK5|CDK12_RAT	*-**	Cyclin-dependent kinase 12	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf17565g00004.1	sp|Q38998|AKT1_ARATH	*-*-	Potassium channel AKT1	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf01105g04004.1	sp|Q10184|HIS4_SCHPO	****	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase	IPR006062 (Histidine biosynthesis), IPR011858 (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic), IPR013785 (Aldolase-type TIM barrel)	GO:0000105 (histidine biosynthetic process), GO:0003824 (catalytic activity), GO:0003949 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity), GO:0008152 (metabolic process)
Niben101Scf01453g08001.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02111g11027.1	ref|XP_002509542.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF50929.1| conserved hypothetical protein [Ricinus communis]	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf02738g03003.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf13934g00014.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01856g00012.1	sp|F4K4R6|GEX2_ARATH	*-*-	Protein GAMETE EXPRESSED 2		
Niben101Scf07250g03030.1	sp|Q9SXL4|AHK1_ARATH	*-*-	Histidine kinase 1		
Niben101Scf00177g02016.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00577g04004.1	AT3G25840.1	****	Protein kinase superfamily protein LENGTH=935	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02541g08001.1	sp|Q402F4|TOM1_TOBAC	***-	Tobamovirus multiplication protein 1	IPR009457 (Domain of unknown function DUF1084)	
Niben101Scf00966g03010.1	AT1G14270.1	***-	CAAX amino terminal protease family protein LENGTH=353	IPR003675 (CAAX amino terminal protease)	GO:0016020 (membrane)
Niben101Scf09962g01012.1	sp|Q6DBP8|GAT11_ARATH	****	GATA transcription factor 11	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01053g00006.1	sp|Q6H4R6|HAK23_ORYSJ	****	Potassium transporter 23	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf01691g01017.1	AT1G29690.1	***-	MAC/Perforin domain-containing protein LENGTH=561	IPR020864 (Membrane attack complex component/perforin (MACPF) domain)	
Niben101Scf15962g00017.1	sp|Q9ER35|FN3K_MOUSE	***-	Fructosamine-3-kinase	IPR011009 (Protein kinase-like domain), IPR016477 (Fructosamine/Ketosamine-3-kinase)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13856g00023.1			Unknown protein		
Niben101Scf16546g00003.1	ref|XP_007046458.1|	*-*-	Trigalactosyldiacylglycerol 1 isoform 5 [Theobroma cacao] gb|EOX90615.1| Trigalactosyldiacylglycerol 1 isoform 5 [Theobroma cacao]		
Niben101Scf01834g04018.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05109g02002.1	AT4G30440.1	****	UDP-D-glucuronate 4-epimerase 1 LENGTH=429	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf16022g00013.1	AT4G22870.2	*-**	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=153	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03861g01001.1	sp|Q9M9Q9|PER5_ARATH	*-**	Peroxidase 5	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08755g03005.1	AT1G30910.1	****	Molybdenum cofactor sulfurase family protein LENGTH=318	IPR005302 (Molybdenum cofactor sulfurase, C-terminal), IPR011037 (Pyruvate kinase-like, insert domain)	GO:0003824 (catalytic activity), GO:0030151 (molybdenum ion binding), GO:0030170 (pyridoxal phosphate binding)
Niben101Ctg13427g00002.1	sp|Q943F3|RL18A_ORYSJ	*-*-	60S ribosomal protein L18a	IPR023573 (Ribosomal protein L18a/LX), IPR028877 (50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04838g02013.1	sp|Q9LUA3|NIMI2_ARATH	-**-	Protein NIM1-INTERACTING 2		
Niben101Scf00825g02019.1	AT4G18060.1	***-	SH3 domain-containing protein LENGTH=351	IPR001452 (SH3 domain)	GO:0005515 (protein binding)
Niben101Scf22144g00002.1			Unknown protein		
Niben101Scf03373g04011.1	ref|NP_001052962.1|	***-	product [Oryza sativa Japonica Group]	IPR025131 (Domain of unknown function DUF4057)	
Niben101Scf03326g03005.1	AT5G16750.1	***-	Transducin family protein / WD-40 repeat family protein LENGTH=876	IPR013934 (Small-subunit processome, Utp13), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding), GO:0006364 (rRNA processing), GO:0032040 (small-subunit processome)
Niben101Scf07253g02011.1	sp|Q4V8K2|CTBL1_RAT	***-	Beta-catenin-like protein 1	IPR010399 (Tify), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00072g10016.1	emb|CDY28651.1|	***-	BnaC09g32240D [Brassica napus]		
Niben101Scf09387g02004.1	AT2G45180.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=134	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf01849g00008.1	AT4G24400.1	****	CBL-interacting protein kinase 8 LENGTH=445	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf32632g00003.1	sp|Q9SU13|FLA2_ARATH	***-	Fasciclin-like arabinogalactan protein 2	IPR000782 (FAS1 domain)	
Niben101Scf18348g00015.1	sp|Q9C9Q4|JAC1_ARATH	***-	J domain-containing protein required for chloroplast accumulation response 1	IPR001623 (DnaJ domain)	
Niben101Scf04400g04012.1	sp|Q6DRC5|USPL1_DANRE	--*-	SUMO-specific isopeptidase USPL1		
Niben101Scf17221g00001.1	emb|CDY57650.1|	***-	BnaAnng14910D [Brassica napus]		
Niben101Scf00798g04004.1	sp|A5FS95|SYFA_DEHMB	--*-	Phenylalanine--tRNA ligase alpha subunit		
Niben101Scf11126g08007.1	sp|Q8GWU0|PGP2_ARATH	****	Phosphoglycolate phosphatase 2	IPR006357 (HAD-superfamily hydrolase, subfamily IIA), IPR023214 (HAD-like domain), IPR023215 (Nitrophenylphosphatase-like  domain)	GO:0008152 (metabolic process), GO:0016791 (phosphatase activity)
Niben101Scf12751g00003.1	AT2G14960.1	***-	Auxin-responsive GH3 family protein LENGTH=590	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf10053g00013.1	ref|XP_002512370.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF49822.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01036g07020.1	ref|WP_026734229.1|	****	RNA-binding protein [Fischerella sp. PCC 9605]	IPR017506 (Photosystem II S4)	GO:0003723 (RNA binding)
Niben101Scf00369g03018.1	sp|P02268|H2A_SEPOF	***-	Histone H2A	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf08478g00018.1			Unknown protein		
Niben101Scf21097g00008.1	sp|P82381|ICI_LINUS	-***	Proteinase inhibitor	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding)
Niben101Scf08755g02024.1	sp|O64759|CAAT5_ARATH	****	Cationic amino acid transporter 5	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf05948g04005.1	AT4G00340.1	****	receptor-like protein kinase 4 LENGTH=818	IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04713g00012.1	AT3G45670.1	****	Protein kinase superfamily protein LENGTH=379	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04783g06006.1	sp|B5EGD5|MIAA1_GEOBB	*-**	tRNA dimethylallyltransferase 1	IPR002627 (tRNA isopentenyltransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf03946g00012.1	sp|Q9LUG9|MD33A_ARATH	***-	Mediator of RNA polymerase II transcription subunit 33A		
Niben101Scf01819g02014.1	AT5G02590.1	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=326	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf18356g00004.1	AT5G11730.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=386	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf15645g01008.1	sp|Q9SS98|OLEO5_ARATH	***-	Oleosin 5	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf01370g00007.1	AT5G09420.1	*-*-	translocon at the outer membrane of chloroplasts 64-V LENGTH=603	IPR000120 (Amidase)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf00671g00006.1	AT2G17200.1	***-	ubiquitin family protein LENGTH=551	IPR009060 (UBA-like), IPR015496 (Ubiquilin), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf01696g06052.1	emb|CDJ69717.1|	*-*-	I WGS project CAKM00000000 data, strain SE8, contig 186, related [Eimeria necatrix]		
Niben101Scf05918g00003.1	sp|Q9FJU9|E1313_ARATH	***-	Glucan endo-1,3-beta-glucosidase 13	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf10031g04007.1	AT1G73590.1	***-	Auxin efflux carrier family protein LENGTH=622	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf09989g01019.1	sp|Q39214|RPM1_ARATH	--*-	Disease resistance protein RPM1		
Niben101Scf04225g00006.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01049g02006.1	sp|Q6ZLK0|OST48_ORYSJ	****	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	IPR005013 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1)	GO:0004579 (dolichyl-diphosphooligosaccharide-protein glycotransferase activity), GO:0005789 (endoplasmic reticulum membrane), GO:0018279 (protein N-linked glycosylation via asparagine)
Niben101Scf02369g02001.1	AT3G45740.1	***-	hydrolase family protein / HAD-superfamily protein LENGTH=376	IPR006357 (HAD-superfamily hydrolase, subfamily IIA), IPR023214 (HAD-like domain)	
Niben101Scf04124g00002.1	sp|O65499|ZAT3_ARATH	--*-	Zinc finger protein ZAT3		
Niben101Scf03307g00020.1	sp|Q46HI6|SYR_PROMT	****	Arginine--tRNA ligase	IPR001278 (Arginine-tRNA ligase)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004814 (arginine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006420 (arginyl-tRNA aminoacylation)
Niben101Scf04430g01006.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11512g01004.1	sp|Q91WK7|ANR54_MOUSE	*-*-	Ankyrin repeat domain-containing protein 54	IPR020683 (Ankyrin repeat-containing domain), IPR021094 (NPR1/NIM1-like, C-terminal), IPR024228 (Domain of unknown function DUF3420)	GO:0005515 (protein binding)
Niben101Scf00578g00018.1	gb|ABD33309.1|	*-**	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf01887g00007.1	sp|Q9JK88|SPI2_MOUSE	***-	Serpin I2	IPR000215 (Serpin family), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf08250g03016.1	sp|P29545|EF1B_ORYSJ	****	Elongation factor 1-beta	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR014717 (Translation elongation factor EF1B/ribosomal protein S6)	GO:0003746 (translation elongation factor activity), GO:0005853 (eukaryotic translation elongation factor 1 complex), GO:0006414 (translational elongation)
Niben101Scf07070g00011.1	sp|Q9LZ00|MED4_ARATH	****	Mediator of RNA polymerase II transcription subunit 4	IPR019258 (Mediator complex, subunit Med4)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf03643g02030.1	sp|Q9BBR5|PSBE_LOTJA	***-	Cytochrome b559 subunit alpha	IPR006217 (Photosystem II cytochrome b559, alpha subunit)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf03977g03001.1	AT1G62400.1	****	Protein kinase superfamily protein LENGTH=345	IPR011009 (Protein kinase-like domain), IPR015783 (Serine/threonine-protein kinase HT1, plant)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07247g05007.1	sp|Q5FW37|MTNB_XENTR	***-	Methylthioribulose-1-phosphate dehydratase	IPR001303 (Class II aldolase/adducin N-terminal), IPR017714 (Methylthioribulose-1-phosphate dehydratase)	GO:0005737 (cytoplasm), GO:0019509 (L-methionine biosynthetic process from methylthioadenosine), GO:0046872 (metal ion binding)
Niben101Scf02112g00006.1	AT5G52580.2	***-	RabGAP/TBC domain-containing protein LENGTH=690	IPR000195 (Rab-GTPase-TBC domain), IPR021935 (Domain of unknown function DUF3548)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf02668g00010.1	gb|ACG31703.1|	*-*-	ubiquitin-protein ligase [Zea mays]	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf03941g02006.1	sp|Q9SNC0|MBD5_ARATH	****	Methyl-CpG-binding domain-containing protein 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf17540g00001.1	sp|O64511|TLOV1_ARATH	***-	Protein TWIN LOV 1	IPR000014 (PAS domain), IPR000700 (PAS-associated, C-terminal)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction)
Niben101Scf07310g01001.1	sp|Q9SXS8|ERF3_TOBAC	****	Ethylene-responsive transcription factor 3	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04114g02011.1	gb|KDR12334.1|	--*-	Fer-1-like protein 4 [Zootermopsis nevadensis]		
Niben101Scf09101g00001.1	sp|P03772|PP_LAMBD	--*-	Serine/threonine-protein phosphatase	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf03540g00020.1	sp|A9WB97|GAL1_CHLAA	*-*-	Galactokinase	IPR006206 (Mevalonate/galactokinase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf08195g07014.1	sp|Q9FK75|GDL82_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf04096g02016.1	sp|A8AAC1|FEN_IGNH4	***-	Flap endonuclease 1	IPR006085 (XPG N-terminal), IPR006086 (XPG-I domain), IPR020045 (5'-3' exonuclease, C-terminal domain), IPR029060 (PIN domain-like)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0004518 (nuclease activity), GO:0006281 (DNA repair)
Niben101Scf08157g02001.1	AT5G54280.2	****	myosin 2 LENGTH=1220	IPR000048 (IQ motif, EF-hand binding site), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf00625g02002.1	AT3G11890.2	*-*-	Sterile alpha motif (SAM) domain-containing protein LENGTH=527	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf07314g04012.1	AT4G35540.1	*-**	zinc ion binding;transcription regulators LENGTH=527	IPR000812 (Transcription factor TFIIB)	GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf10043g00010.1	sp|E2RQ15|RAB25_CANFA	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf03113g01010.1			Unknown protein		
Niben101Scf06186g07017.1	AT4G25610.1	*-*-	C2H2-like zinc finger protein LENGTH=586	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Ctg08878g00004.1	sp|O80822|PER25_ARATH	*-**	Peroxidase 25	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07793g02011.1	sp|C3S7F0|OLES1_BRANA	***-	Oleosin S1-2	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf02665g15022.1	AT3G08640.1	***-	Protein of unknown function (DUF3411) LENGTH=337	IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf00428g05006.1	AT1G20960.1	*-*-	U5 small nuclear ribonucleoprotein helicase, putative LENGTH=2171	IPR000008 (C2 domain), IPR004179 (Sec63 domain), IPR014756 (Immunoglobulin E-set), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf00781g00004.1	AT1G44760.1	***-	Adenine nucleotide alpha hydrolases-like superfamily protein LENGTH=213		
Niben101Scf02426g02006.1			Unknown protein		
Niben101Scf03482g01002.1	sp|Q9ZW30|GSTU1_ARATH	*-*-	Glutathione S-transferase U1	IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf03496g00020.1	AT5G13450.1	****	delta subunit of Mt ATP synthase LENGTH=238	IPR000711 (ATPase, OSCP/delta subunit), IPR026015 (F1F0 ATP synthase OSCP/delta subunit, N-terminal domain)	GO:0015986 (ATP synthesis coupled proton transport), GO:0016020 (membrane), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Scf15817g00002.1	sp|P48699|RBL_DENCL	*-**	Ribulose bisphosphate carboxylase large chain	IPR000685 (Ribulose bisphosphate carboxylase, large subunit, C-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf01374g15019.1	gb|AFW90637.1|	*-*-	TAF-3 [Solanum tuberosum]		
Niben101Scf06658g00002.1	AT5G66200.1	***-	armadillo repeat only 2 LENGTH=651	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf03471g02005.1	sp|Q9M2F1|RS272_ARATH	*-*-	40S ribosomal protein S27-2	IPR000592 (Ribosomal protein S27e), IPR023407 (Ribosomal protein S27e, zinc-binding domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06737g00025.1	sp|Q936D6|SAHH_STRAA	****	Adenosylhomocysteinase	IPR000043 (Adenosylhomocysteinase), IPR016040 (NAD(P)-binding domain)	GO:0004013 (adenosylhomocysteinase activity), GO:0006730 (one-carbon metabolic process)
Niben101Scf01908g00007.1	ref|XP_002514759.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF47865.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05200g00003.1	AT4G36950.1	****	mitogen-activated protein kinase kinase kinase 21 LENGTH=336	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09101g00003.1	AT2G30160.1	***-	Mitochondrial substrate carrier family protein LENGTH=331	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Ctg12595g00001.1	gb|AFH53854.1|	***-	impaired sucrose induction protein, partial [Echinopsis aurea]	IPR012535 (Cell division protein Cdc14)	
Niben101Scf15338g00001.1	AT1G61670.1	***-	Lung seven transmembrane receptor family protein LENGTH=513	IPR009637 (Transmembrane receptor, eukaryota)	GO:0016021 (integral component of membrane)
Niben101Scf03693g10004.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf12483g01003.1	sp|A4YHV0|RPOL_METS5	****	DNA-directed RNA polymerase subunit L	IPR009025 (DNA-directed RNA polymerase, RBP11-like dimerisation domain)	GO:0006351 (transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf09698g00002.1			Unknown protein		
Niben101Scf01022g02009.1	sp|Q9LVQ0|PME31_ARATH	****	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01376g03019.1	sp|O77834|PRDX6_BOVIN	*-*-	Peroxiredoxin-6	IPR012336 (Thioredoxin-like fold)	GO:0016209 (antioxidant activity), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf36218g00003.1	sp|Q9AMN9|DUSC_PSEAC	*-**	tRNA-dihydrouridine synthase C	IPR001269 (tRNA-dihydrouridine synthase), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008033 (tRNA processing), GO:0017150 (tRNA dihydrouridine synthase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05302g01001.1	sp|Q9ZU97|VAC14_ARATH	***-	Protein VAC14 homolog	IPR016024 (Armadillo-type fold), IPR021841 (Vacuolar protein 14 C-terminal Fig4-binding domain), IPR026825 (Vacuole morphology and inheritance protein 14)	GO:0005488 (binding), GO:0043550 (regulation of lipid kinase activity), GO:0070772 (PAS complex)
Niben101Scf01711g02010.1	AT3G02430.1	***-	Protein of unknown function (DUF679) LENGTH=219	IPR007770 (Protein of unknown function DUF679)	
Niben101Scf01635g05016.1	gb|AAK13103.1|AC078839_19	*-*-	Helicase-like protein [Oryza sativa Japonica Group]		
Niben101Scf05896g02007.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04160g01007.1	sp|Q9LNW3|P2C03_ARATH	*-*-	Protein phosphatase 2C 3	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf03307g00022.1	sp|A4K2W5|STK4_AOTNA	*-**	Serine/threonine-protein kinase 4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01738g07002.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02486g00005.1	emb|CDX80568.1|	*-*-	BnaC07g28760D [Brassica napus]		
Niben101Scf00759g00004.1	sp|O04479|LBD6_ARATH	***-	LOB domain-containing protein 6	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf02556g00001.1	sp|Q4V8B1|S36A3_RAT	*-*-	Proton-coupled amino acid transporter 3	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf12024g00020.1			Unknown protein		
Niben101Scf08182g02013.1	ref|NP_001105775.1|	***-	alkaline alpha galactosidase 3 [Zea mays] alkaline alpha galactosidase 3 [Zea mays]	IPR008811 (Glycosyl hydrolases 36), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf00254g03005.1	sp|Q8LGD1|SP1L5_ARATH	--*-	Protein SPIRAL1-like 5		
Niben101Scf01289g09008.1	sp|Q96N64|PWP2A_HUMAN	*-*-	PWWP domain-containing protein 2A	IPR000313 (PWWP domain)	
Niben101Scf07783g01015.1	sp|Q91X20|ASH2L_MOUSE	*-*-	Set1/Ash2 histone methyltransferase complex subunit ASH2	IPR001870 (B30.2/SPRY domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005515 (protein binding)
Niben101Scf00151g07004.1	ref|XP_002523937.1|	****	hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gb|EEF38424.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf13843g00003.1	AT5G10250.1	***-	Phototropic-responsive NPH3 family protein LENGTH=607	IPR027356 (NPH3 domain), IPR029959 (Root phototropism protein 3-like)	GO:0016567 (protein ubiquitination)
Niben101Scf12372g01015.1	sp|P62881|GBB5_MOUSE	*-**	Guanine nucleotide-binding protein subunit beta-5	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00825g04011.1	sp|Q00985|ACCO1_MALDO	***-	1-aminocyclopropane-1-carboxylate oxidase 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf09205g00006.1			Unknown protein		
Niben101Scf03323g01002.1	emb|CDX75714.1|	***-	BnaC03g37970D [Brassica napus]		
Niben101Scf02540g01002.1	sp|Q9FIE3|VIN3_ARATH	***-	Protein VERNALIZATION INSENSITIVE 3	IPR013783 (Immunoglobulin-like fold)	GO:0005515 (protein binding)
Niben101Scf05095g00004.1	ref|XP_003614922.1|	--*-	TNP1 [Medicago truncatula]		
Niben101Ctg14602g00002.1	sp|O75165|DJC13_HUMAN	--*-	DnaJ homolog subfamily C member 13		
Niben101Scf02616g00002.1	sp|Q8BGI1|RNF24_MOUSE	*-*-	RING finger protein 24	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01028g03013.1	AT2G36350.1	****	Protein kinase superfamily protein LENGTH=949	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02190g02001.1	gb|AES92662.2|	*-**	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf00503g10004.1	emb|CDY07177.1|	***-	BnaCnng01920D [Brassica napus]	IPR010605 (Protein of unknown function DUF1191)	
Niben101Scf11415g00002.1	AT5G40390.1	***-	Raffinose synthase family protein LENGTH=783	IPR008811 (Glycosyl hydrolases 36), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf04259g00004.1	sp|Q09221|CPNA2_CAEEL	*-*-	Copine family protein 2	IPR002035 (von Willebrand factor, type A), IPR010734 (Copine)	
Niben101Scf08285g00010.1			Unknown protein		
Niben101Scf04732g01013.1			Unknown protein		
Niben101Scf25180g00001.1	sp|Q9LTV8|PP224_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04738g04002.1	sp|Q681K7|GEX1_ARATH	***-	Protein GAMETE EXPRESSED 1		
Niben101Scf02812g01006.1			Unknown protein		
Niben101Scf03643g02041.1	sp|P23134|CYB_RHORU	***-	Cytochrome b	IPR005798 (Cytochrome b/b6, C-terminal), IPR016174 (Di-haem cytochrome, transmembrane), IPR027387 (Cytochrome b/b6-like domain)	GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0022904 (respiratory electron transport chain)
Niben101Scf02462g03003.1	sp|O22938|Y2182_ARATH	*-*-	Leucine-rich repeat receptor-like tyrosine-protein kinase		
Niben101Scf04171g02005.1	AT5G66200.1	***-	armadillo repeat only 2 LENGTH=651	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00851g01001.1	gb|ADI45881.1|	*-*-	sex-linked protein 9 [Silene latifolia]		
Niben101Scf04724g03012.1	AT3G15520.1	****	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein LENGTH=466	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf04886g05006.1			Unknown protein		
Niben101Scf05750g00026.1	emb|CDY39588.1|	-**-	BnaCnng09570D [Brassica napus]		
Niben101Scf05634g01008.1	sp|P08439|G3P_ZYGRO	***-	Glyceraldehyde-3-phosphate dehydrogenase	IPR020831 (Glyceraldehyde/Erythrose phosphate dehydrogenase family)	GO:0006006 (glucose metabolic process), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0050661 (NADP binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10732g01020.1			Unknown protein		
Niben101Scf03427g03001.1	gb|KEH31111.1|	*-*-	epoxide hydrolase-like protein [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00317g07008.1	sp|Q182E7|DNAJ_PEPD6	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024586 (DnaJ-like protein C11, C-terminal)	
Niben101Scf04411g02006.1	AT2G41430.1	***-	dehydration-induced protein (ERD15) LENGTH=163	IPR009818 (Ataxin-2, C-terminal)	
Niben101Scf07825g02002.1	AT5G12460.1	***-	Protein of unknown function (DUF604) LENGTH=441	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf02271g04003.1	sp|Q06087|TYDC3_PETCR	***-	Tyrosine decarboxylase 3	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf09516g00011.1	sp|P28342|GSTZ1_DIACA	*-*-	Glutathione S-transferase 1	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0003824 (catalytic activity), GO:0005515 (protein binding)
Niben101Scf02786g03020.1	ref|NP_186979.1|	--**	Adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana] hypothetical protein [Arabidopsis thaliana] gb|AAY78733.1| universal stress protein family protein [Arabidopsis thaliana] gb|AEE73923.1| Adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana]	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf13962g00001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01075g01003.1	sp|Q9LW49|ERF4_NICSY	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07375g01008.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02565g00002.1	sp|Q39828|SDL5A_SOYBN	*-*-	Dynamin-related protein 5A	IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf03094g04002.1	gb|EMT07289.1|	***-	Katanin p60 ATPase-containing subunit A-like protein 2 [Aegilops tauschii]	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf07591g00002.1	AT1G48790.1	***-	associated molecule with the SH3 domain of STAM 1 LENGTH=507	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR015063 (USP8 dimerisation domain)	GO:0005515 (protein binding)
Niben101Scf00756g01005.1	AT4G28230.1	***-	unknown protein; Has 444 Blast hits to 358 proteins in 107 species: Archae - 0; Bacteria - 20; Metazoa - 179; Fungi - 26; Plants - 38; Viruses - 2; Other Eukaryotes - 179 (source: NCBI BLink). LENGTH=402		
Niben101Scf03446g08003.1	ref|XP_002515417.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF46866.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01663g00004.1	AT4G14860.1	*-*-	ovate family protein 11 LENGTH=182	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf01611g13001.1	AT4G32790.1	***-	Exostosin family protein LENGTH=593	IPR004263 (Exostosin-like)	
Niben101Scf11497g00002.1	sp|A7FUZ6|MOAA_CLOB1	****	Cyclic pyranopterin monophosphate synthase	IPR007197 (Radical SAM), IPR013483 (Molybdenum cofactor biosynthesis protein A)	GO:0003824 (catalytic activity), GO:0006777 (Mo-molybdopterin cofactor biosynthetic process), GO:0019008 (molybdopterin synthase complex), GO:0046872 (metal ion binding), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf14642g02006.1	sp|Q6PDK2|KMT2D_MOUSE	*-*-	Histone-lysine N-methyltransferase 2D	IPR001214 (SET domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf13683g02013.1	sp|Q5HRX2|IMDH_STAEQ	*-*-	Inosine-5'-monophosphate dehydrogenase	IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02606g05020.1	AT2G48070.3	*-*-	resistance to phytophthora 1 LENGTH=201		
Niben101Scf07709g00017.1	sp|Q40778|C74A2_PARAR	***-	Allene oxide synthase	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02793g12007.1	sp|Q9M2F8|CCR4B_ARATH	*-*-	Carbon catabolite repressor protein 4 homolog 2		
Niben101Scf02455g03031.1	AT1G80520.1	***-	Sterile alpha motif (SAM) domain-containing protein LENGTH=192	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf10616g00008.1	AT5G39210.1	*-*-	chlororespiratory reduction 7 LENGTH=156	IPR021954 (Protein of unknown function DUF3571)	
Niben101Scf10699g00003.1	sp|Q85AI6|RR7_ADICA	--*-	30S ribosomal protein S7, chloroplastic		
Niben101Scf02572g03001.1	AT1G80370.1	***-	Cyclin A2;4 LENGTH=461	IPR013763 (Cyclin-like), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0005634 (nucleus), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02370g02007.1	sp|P50346|RLA0_SOYBN	***-	60S acidic ribosomal protein P0	IPR001790 (Ribosomal protein L10/acidic P0), IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation), GO:0042254 (ribosome biogenesis)
Niben101Scf14096g00006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07662g03001.1	sp|Q9FZ95|PUP3_ARATH	***-	Purine permease 3	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf01032g02002.1	sp|O48724|WEB1_ARATH	***-	Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1	IPR008545 (WEB family)	
Niben101Scf03848g07008.1	sp|Q96AY4|TTC28_HUMAN	*-*-	Tetratricopeptide repeat protein 28	IPR003590 (Leucine-rich repeat, ribonuclease inhibitor subtype), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf11161g01016.1	AT1G58060.1	*-*-	RNA helicase family protein LENGTH=1459		
Niben101Scf03619g02004.1	AT3G07330.1	*-*-	Cellulose-synthase-like C6 LENGTH=682	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf00231g03008.1	ref|NP_001046922.1|	*-*-	product [Oryza sativa Japonica Group]	IPR007454 (Uncharacterised protein family UPF0250), IPR027471 (YbeD-like domain)	
Niben101Scf06009g00004.1	AT5G67450.1	*-*-	zinc-finger protein 1 LENGTH=245	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf07773g00006.1	sp|Q9FJX9|DAR7_ARATH	*-*-	Protein DA1-related 7	IPR022087 (Protein DA1 like)	
Niben101Scf05916g02018.1	gb|ABA98345.2|	--*-	Plastocyanin-like domain containing protein, expressed [Oryza sativa Japonica Group]	IPR008972 (Cupredoxin)	
Niben101Scf02381g01001.1	sp|F4IQJ2|ELP5_ARATH	***-	Elongator complex protein 5	IPR019519 (Elongator complex protein 5)	GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03891g01004.1	AT5G38200.1	****	Class I glutamine amidotransferase-like superfamily protein LENGTH=436	IPR011697 (Peptidase C26), IPR029062 (Class I glutamine amidotransferase-like)	GO:0006541 (glutamine metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf00126g06001.1			Unknown protein		
Niben101Scf04090g00003.1			Unknown protein		
Niben101Scf00149g04002.1	ref|XP_002525656.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF36774.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04624g00002.1	gb|ACG43287.1|	*-*-	COX VIIa-like protein [Zea mays]	IPR003177 (Cytochrome c oxidase, subunit VIIa)	GO:0004129 (cytochrome-c oxidase activity), GO:0005746 (mitochondrial respiratory chain), GO:0009055 (electron carrier activity)
Niben101Scf00646g01003.1	gb|ERE65596.1|	****	histone-binding protein RBBP7-like protein [Cricetulus griseus]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR022052 (Histone-binding protein RBBP4, N-terminal)	GO:0005515 (protein binding)
Niben101Scf00339g10010.1	sp|Q9FLE9|PRE1_ARATH	***-	Transcription factor PRE1	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02391g00013.1	sp|O04084|SCP31_ARATH	****	Serine carboxypeptidase-like 31	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05542g00009.1	AT1G09610.1	***-	Protein of unknown function (DUF579) LENGTH=282	IPR021148 (Putative polysaccharide biosynthesis protein)	
Niben101Scf02182g03001.1	sp|Q9LQQ4|H2B1_ARATH	***-	Histone H2B.1	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	
Niben101Scf08242g01021.1	AT5G51160.1	*-*-	Ankyrin repeat family protein LENGTH=442	IPR006578 (MADF domain), IPR017877 (Myb-like domain), IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf00654g00001.1	ref|XP_007015597.1|	*-*-	BSD domain (BTF2-like transcription factors, Synapse-associated proteins and D s) isoform 6 [Theobroma cacao]		
Niben101Scf00854g08061.1			Unknown protein		
Niben101Scf00625g02004.1	sp|Q70Y05|RR14_AMBTC	*-*-	30S ribosomal protein S14, chloroplastic	IPR001209 (Ribosomal protein S14)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05330g03006.1			Unknown protein		
Niben101Scf00143g01004.1	sp|P00059|CYC_ABUTH	***-	Cytochrome c	IPR002327 (Cytochrome c, class IA/ IB), IPR009056 (Cytochrome c-like domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf10997g02003.1	sp|O97397|CATLL_PHACE	--*-	Cathepsin L-like proteinase	IPR013128 (Peptidase C1A)	
Niben101Scf02435g00001.1	sp|Q8JG64|PDIA3_CHICK	*-*-	Protein disulfide-isomerase A3	IPR003774 (Protein of unknown function UPF0301), IPR012336 (Thioredoxin-like fold)	
Niben101Scf23355g00001.1	AT2G20990.3	***-	synaptotagmin A LENGTH=579	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf15678g00002.1	sp|Q5CZL1|GDAP2_XENTR	*-*-	Ganglioside-induced differentiation-associated protein 2	IPR001251 (CRAL-TRIO domain)	
Niben101Scf13199g00011.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01798g00004.1	gb|ACB70457.1|	***-	X7, partial [Silene latifolia]	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf01679g03019.1	sp|Q94B77|FH5_ARATH	*-*-	Formin-like protein 5	IPR015425 (Formin, FH2 domain)	
Niben101Scf04464g03007.1	ref|XP_002885485.1|	--*-	VQ motif-containing protein [Arabidopsis lyrata subsp. lyrata] gb|EFH61744.1| VQ motif-containing protein [Arabidopsis lyrata subsp. lyrata]	IPR008889 (VQ)	
Niben101Scf02399g01012.1	AT1G51580.1	****	RNA-binding KH domain-containing protein LENGTH=621	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf08039g04010.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Ctg11244g00002.1			Unknown protein		
Niben101Scf06799g02001.1	AT1G79550.1	*-**	phosphoglycerate kinase LENGTH=401	IPR001576 (Phosphoglycerate kinase)	GO:0004618 (phosphoglycerate kinase activity), GO:0006096 (glycolytic process)
Niben101Scf13833g02001.1	sp|P52409|E13B_WHEAT	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08899g00002.1	sp|Q4YZC6|TCTP_PLABA	--*-	Translationally-controlled tumor protein homolog	IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity)
Niben101Scf01943g10013.1	sp|C1CRV9|KTHY_STRZT	****	Thymidylate kinase	IPR018094 (Thymidylate kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004798 (thymidylate kinase activity), GO:0005524 (ATP binding), GO:0006233 (dTDP biosynthetic process)
Niben101Scf03757g06010.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02972g07002.1	sp|Q9T096|YIPL6_ARATH	***-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf06761g03002.1	AT5G25280.1	***-	serine-rich protein-related LENGTH=220		
Niben101Scf08538g00006.1	sp|O24575|DCAM_MAIZE	****	S-adenosylmethionine decarboxylase proenzyme	IPR001985 (S-adenosylmethionine decarboxylase), IPR016067 (S-adenosylmethionine decarboxylase, core), IPR018167 (S-adenosylmethionine decarboxylase subgroup)	GO:0004014 (adenosylmethionine decarboxylase activity), GO:0006597 (spermine biosynthetic process), GO:0008295 (spermidine biosynthetic process)
Niben101Scf07913g00006.1	sp|Q9C9H7|RLP12_ARATH	*-*-	Receptor-like protein 12		
Niben101Scf04700g09003.1	ref|XP_002525295.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37123.1| conserved hypothetical protein [Ricinus communis]	IPR016972 (Uncharacterised conserved protein UCP031279)	
Niben101Scf04632g07006.1	emb|CDY32323.1|	***-	BnaC01g36420D [Brassica napus]	IPR007608 (Senescence regulator S40)	
Niben101Scf01859g08017.1	sp|Q9NV70|EXOC1_HUMAN	***-	Exocyst complex component 1	IPR019160 (Exocyst complex, component 1/SEC3), IPR028258 (Exocyst complex component Sec3, PIP2-binding N-terminal domain)	
Niben101Scf00539g06001.1	ref|XP_003597566.1|	--*-	Casein kinase I isoform delta-like protein [Medicago truncatula] gb|AES67817.1| casein kinase I-like protein [Medicago truncatula]		
Niben101Scf02429g07021.1	sp|P0AET9|HDHA_ECO57	--*-	7-alpha-hydroxysteroid dehydrogenase		
Niben101Scf05382g03006.1	AT1G15380.1	*-*-	Lactoylglutathione lyase / glyoxalase I family protein LENGTH=174	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf02348g11002.1			Unknown protein		
Niben101Scf06570g04007.1			Unknown protein		
Niben101Scf01145g03001.1	AT5G45560.1	***-	Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein LENGTH=719	IPR009769 (Domain of unknown function DUF1336), IPR011993 (Pleckstrin homology-like domain), IPR023393 (START-like domain)	
Niben101Scf02976g00006.1	sp|Q4R5M2|CATB_MACFA	***-	Cathepsin B	IPR013128 (Peptidase C1A)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity), GO:0050790 (regulation of catalytic activity)
Niben101Scf06376g05028.1	sp|Q5XF11|FB248_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf08876g00022.1	sp|Q6ZSG1|RN165_HUMAN	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03308g02019.1			Unknown protein		
Niben101Scf11649g01010.1			Unknown protein		
Niben101Scf05290g01008.1	sp|P19407|OEC6_SPIOL	--*-	6.7 kDa chloroplast outer envelope membrane protein		
Niben101Scf00155g00009.1	sp|P26357|TBP_SOLTU	****	TATA-box-binding protein	IPR000814 (TATA-box binding protein)	GO:0003677 (DNA binding), GO:0006352 (DNA-templated transcription, initiation)
Niben101Scf04940g00004.1	sp|Q67ZE1|HSDD2_ARATH	****	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2	IPR003388 (Reticulon), IPR016040 (NAD(P)-binding domain)	GO:0003854 (3-beta-hydroxy-delta5-steroid dehydrogenase activity), GO:0006694 (steroid biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf02606g00002.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf00167g02005.1	AT1G74780.1	***-	Nodulin-like / Major Facilitator Superfamily protein LENGTH=533	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf01683g14005.1	sp|Q9ZUU0|WRK44_ARATH	*-**	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf23305g01013.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf04436g13024.1	sp|Q6UNT2|RL5_CUCSA	***-	60S ribosomal protein L5	IPR005484 (Ribosomal protein L18/L5), IPR025607 (Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0008097 (5S rRNA binding)
Niben101Scf01934g02004.1	sp|Q01413|E13B_SOLLC	***-	Glucan endo-1,3-beta-glucosidase B	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00854g01036.1			Unknown protein		
Niben101Scf02151g01002.1	sp|Q5BIY5|RN145_XENLA	--*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02513g09004.1	sp|Q9ZUN3|KEA4_ARATH	--*-	K(+) efflux antiporter 4		
Niben101Scf05536g00004.1			Unknown protein		
Niben101Scf11283g00001.1	dbj|BAD83480.2|	*-*-	NADH dehydrogenase subunit 4 (mitochondrion) [Nicotiana tabacum]		
Niben101Scf02622g01003.1	sp|Q8C031|LRC4C_MOUSE	*-*-	Leucine-rich repeat-containing protein 4C	IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR003591 (Leucine-rich repeat, typical subtype), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0043531 (ADP binding)
Niben101Scf00592g14019.1	AT2G17200.1	***-	ubiquitin family protein LENGTH=551	IPR009060 (UBA-like), IPR015496 (Ubiquilin), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf16015g04006.1	gb|AER52053.1|	*-*-	vWA domain containing protein [Oryza sativa Japonica Group]	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf00747g05006.1	AT3G14060.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=125		
Niben101Scf03550g00016.1	sp|A0JND3|EOGT_BOVIN	*-**	EGF domain-specific O-linked N-acetylglucosamine transferase	IPR007657 (Glycosyltransferase AER61, uncharacterised)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf02639g04015.1			Unknown protein		
Niben101Scf02752g04008.1	sp|P19515|LIP_RHIMI	***-	Lipase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf04692g00003.1	sp|Q5ZI03|CIR1_CHICK	--*-	Corepressor interacting with RBPJ 1	IPR019339 (CBF1-interacting co-repressor CIR, N-terminal domain)	
Niben101Scf06805g00004.1			Unknown protein		
Niben101Scf02538g04007.1	sp|Q9FMV5|NFYC4_ARATH	*-**	Nuclear transcription factor Y subunit C-4	IPR009072 (Histone-fold), IPR027170 (Transcriptional activator NFYC/HAP5 subunit)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005622 (intracellular), GO:0006355 (regulation of transcription, DNA-templated), GO:0016602 (CCAAT-binding factor complex), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf00821g14002.1			Unknown protein		
Niben101Scf04019g02005.1	sp|O67623|DNAJ1_AQUAE	*-*-	Chaperone protein DnaJ 1	IPR001623 (DnaJ domain)	
Niben101Scf01243g02005.1	sp|O04532|FH8_ARATH	***-	Formin-like protein 8	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR015425 (Formin, FH2 domain)	
Niben101Scf00621g12018.1	AT4G15470.1	***-	Bax inhibitor-1 family protein LENGTH=256	IPR006214 (Bax inhibitor 1-related)	
Niben101Scf04217g07002.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11288g02001.1			Unknown protein		
Niben101Scf07339g02013.1			Unknown protein		
Niben101Ctg14542g00004.1	AT1G27760.3	*-*-	interferon-related developmental regulator family protein / IFRD protein family LENGTH=441		
Niben101Scf11443g01020.1	emb|CDY10775.1|	*-*-	BnaA05g11610D [Brassica napus]		
Niben101Scf05239g01029.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2		
Niben101Scf05643g06006.1	ref|NP_001052354.1|	***-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf04060g00003.1	ref|NP_001041892.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf03840g03021.1	AT3G17205.1	****	ubiquitin protein ligase 6 LENGTH=1029	IPR000569 (HECT)	GO:0004842 (ubiquitin-protein transferase activity)
Niben101Scf12589g00008.1	emb|CDX70091.1|	***-	BnaA10g24400D [Brassica napus]	IPR007656 (Zein-binding domain)	
Niben101Scf02929g00063.1	sp|Q9MV48|MATK_PSEMZ	--*-	Maturase K		
Niben101Scf03164g07004.1	sp|Q9LV40|ROGF8_ARATH	*-**	Rho guanine nucleotide exchange factor 8	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf02249g05013.1	sp|Q9SBA5|ITPK1_ARATH	****	Inositol-tetrakisphosphate 1-kinase 1	IPR008656 (Inositol-tetrakisphosphate 1-kinase)	GO:0000287 (magnesium ion binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0032957 (inositol trisphosphate metabolic process), GO:0046872 (metal ion binding), GO:0047325 (inositol tetrakisphosphate 1-kinase activity), GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity), GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
Niben101Scf26575g00002.1	sp|Q9ZQI8|NLTL2_ARATH	***-	Non-specific lipid-transfer protein-like protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf09582g01011.1	sp|Q9UJU3|ZN112_HUMAN	--*-	Zinc finger protein 112	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf08057g00006.1	sp|Q9LQU4|PCR2_ARATH	***-	Protein PLANT CADMIUM RESISTANCE 2	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf04131g00006.1	sp|Q9LMP7|GOS11_ARATH	****	Golgi SNAP receptor complex member 1-1	IPR023601 (Golgi SNAP receptor complex, subunit 1)	GO:0000139 (Golgi membrane), GO:0005801 (cis-Golgi network), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0016021 (integral component of membrane)
Niben101Ctg15998g00002.1	gb|KEH42928.1|	*-*-	subtilisin-like serine protease [Medicago truncatula]		
Niben101Scf03256g00001.1			Unknown protein		
Niben101Scf05948g08006.1	AT1G29300.1	***-	Plant protein of unknown function (DUF641) LENGTH=459	IPR006943 (Domain of unknown function DUF641, plant)	
Niben101Scf02406g00002.1	sp|Q38894|GDL13_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf10101g00016.1	sp|P35614|ERF1Z_ARATH	****	Eukaryotic peptide chain release factor subunit 1-3	IPR004403 (Peptide chain release factor eRF1/aRF1), IPR029064 (50S ribosomal protein L30e-like)	GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf06183g04005.1	gb|KEH18492.1|	--*-	lung seven transmembrane receptor family protein [Medicago truncatula]		
Niben101Scf03493g00021.1	emb|CDY42759.1|	***-	BnaA03g47800D [Brassica napus]	IPR027858 (Protein of unknown function DUF4516)	
Niben101Scf01592g00003.1	sp|Q8CH62|ORAV1_MOUSE	***-	Oral cancer-overexpressed protein 1 homolog	IPR019191 (Essential protein Yae1, N-terminal)	
Niben101Scf01612g00002.1	sp|Q9SAY1|SUT11_ARATH	*-**	Sulfate transporter 1.1	IPR001902 (Sulphate anion transporter)	GO:0005886 (plasma membrane), GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01406g03022.1	emb|CDY18414.1|	***-	BnaA04g21730D [Brassica napus]		
Niben101Scf00210g00001.1	tpg|DAA47098.1|	--*-	TPA: hypothetical protein ZEAMMB73_291124 [Zea mays]		
Niben101Scf00454g03001.1	sp|Q40478|ERF5_TOBAC	****	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf16981g02004.1			Unknown protein		
Niben101Scf01993g04005.1	sp|Q9FVW4|RENT3_ARATH	***-	Regulator of nonsense transcripts UPF3	IPR005120 (Regulator of nonsense-mediated decay, UPF3)	GO:0000166 (nucleotide binding)
Niben101Scf03486g02010.1	AT4G22756.1	***-	sterol C4-methyl oxidase 1-2 LENGTH=299	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00305g05022.1	ref|XP_002521554.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF40825.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01266g01032.1	gb|AES80779.2|	*-*-	transportin-like protein [Medicago truncatula]		
Niben101Scf21578g00002.1	emb|CDY01946.1|	--*-	BnaC02g27810D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00915g01001.1	sp|Q5FPT6|GLND_GLUOX	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf00119g04002.1	sp|Q9SYG9|CCX4_ARATH	*-*-	Cation/calcium exchanger 4		
Niben101Scf02021g06007.1	sp|Q9SK27|ENL1_ARATH	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf04109g03009.1	sp|C8V212|BRO1_EMENI	***-	Vacuolar protein-sorting protein bro1	IPR004328 (BRO1 domain), IPR025304 (ALIX V-shaped domain)	GO:0005515 (protein binding)
Niben101Scf01179g00003.1	AT5G67610.2	*-*-	Uncharacterized conserved protein (DUF2215) LENGTH=498	IPR019358 (Transmembrane protein 194)	
Niben101Scf00156g01002.1	AT2G36835.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=124		
Niben101Scf08089g00006.1	sp|Q9M1K2|PI5K4_ARATH	****	Phosphatidylinositol 4-phosphate 5-kinase 4	IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf06525g03006.1	gb|KEH32152.1|	*-*-	palmitoyltransferase TIP1 [Medicago truncatula]		
Niben101Scf00010g01006.1	emb|CDY04185.1|	-**-	BnaA09g19630D [Brassica napus]		
Niben101Scf05118g04012.1	sp|O13493|MYB1_NEUCR	--**	Myb-like DNA-binding protein myb-1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf06216g00003.1	emb|CDY47534.1|	***-	BnaC03g69280D [Brassica napus]		
Niben101Scf02537g06003.1	sp|Q9ZPE7|EXO_ARATH	*-*-	Protein EXORDIUM	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf03080g04029.1	emb|CDY02278.1|	***-	BnaA03g38890D [Brassica napus]		
Niben101Scf03167g02027.1	AT1G12250.1	*-*-	Pentapeptide repeat-containing protein LENGTH=280	IPR001646 (Pentapeptide repeat)	
Niben101Scf04368g00005.1	sp|Q9SH93|IPCS2_ARATH	***-	Phosphatidylinositol:ceramide inositolphosphotransferase 2	IPR025749 (Sphingomyelin synthase-like domain)	
Niben101Scf05106g00011.1	sp|B7GNB6|RS13_BIFLS	***-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH), IPR027437 (30s ribosomal protein S13, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf16206g00014.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04332g02003.1	sp|P28178|PK2_DICDI	****	Protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10579g00015.1	AT5G62570.2	***-	Calmodulin binding protein-like LENGTH=494	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf08472g01001.1	AT1G65800.1	*-**	receptor kinase 2 LENGTH=847	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04114g01041.1	ref|YP_002608396.1|	***-	orf86 [Vitis vinifera] emb|CAQ77655.1| orf86 [Vitis vinifera] gb|ACS15212.1| ORF86 [Vitis vinifera]		
Niben101Scf05118g04011.1	sp|P93788|REMO_SOLTU	***-	Remorin	IPR005516 (Remorin, C-terminal), IPR005518 (Remorin, N-terminal)	
Niben101Ctg14080g00002.1	sp|Q0AUJ2|RL5_SYNWW	*-*-	50S ribosomal protein L5	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04003g01002.1	sp|Q69ZM6|STK36_MOUSE	*-**	Serine/threonine-protein kinase 36	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01607g03003.1	sp|Q9LNB9|LBD2_ARATH	*-*-	LOB domain-containing protein 2	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf00984g09008.1	sp|Q91577|CY561_XENLA	*-*-	Cytochrome b561	IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf01249g02002.1	ref|NP_001056990.1|	***-	[Oryza sativa Japonica Group]		
Niben101Scf01396g07007.1	sp|Q9M907|PP217_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04875g02009.1	AT2G36770.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf10818g00020.1	sp|Q9SXA1|P4KA1_ARATH	*-*-	Phosphatidylinositol 4-kinase alpha 1		
Niben101Scf09074g00022.1	gb|AAK13103.1|AC078839_19	*-**	Helicase-like protein [Oryza sativa Japonica Group]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf03141g06003.1	gb|ADG38081.1|	*-*-	AT1G76250-like protein [Capsella grandiflora]		
Niben101Scf03937g00007.1			Unknown protein		
Niben101Scf01633g00030.1	sp|A4VGE5|UBIE_PSEU5	--**	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf00735g06007.1			Unknown protein		
Niben101Scf05487g00013.1	sp|Q85056|CAPSD_AHV2H	--*-	Capsid protein		
Niben101Scf03584g04008.1	sp|O81488|ALFL4_ARATH	***-	PHD finger protein ALFIN-LIKE 4	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR021998 (Alfin)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0042393 (histone binding)
Niben101Scf04131g00005.1	sp|Q12873|CHD3_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 3	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR009057 (Homeodomain-like), IPR009462 (Domain of unknown function DUF1086), IPR009463 (Domain of unknown function DUF1087), IPR012957 (CHD, C-terminal 2), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016197 (Chromo domain-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf03515g00027.1			Unknown protein		
Niben101Scf00611g02008.1	AT5G12040.1	***-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein LENGTH=369	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf00331g02008.1	sp|Q704U0|XPO7A_XENLA	*-*-	Exportin-7-A		
Niben101Scf02668g04003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06439g02001.1	AT2G43500.1	***-	Plant regulator RWP-RK family protein LENGTH=947	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain)	GO:0005515 (protein binding)
Niben101Scf13556g00002.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03657g04010.1	sp|Q2V3B2|CCD51_ARATH	--*-	Cyclin-D5-1	IPR013763 (Cyclin-like)	
Niben101Scf02790g02017.1	tpg|DAA53070.1|	***-	TPA: transposon protein CACTA, En/Spm sub-class [Zea mays]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf12589g00007.1	sp|Q9H9V9|JMJD4_HUMAN	*-*-	JmjC domain-containing protein 4	IPR001810 (F-box domain), IPR003347 (JmjC domain)	GO:0005515 (protein binding)
Niben101Scf05841g01026.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06444g02010.1	sp|Q3C1G9|RPOC2_NICSY	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf04905g06016.1	sp|P0AAG7|MDLB_ECO57	*-**	Multidrug resistance-like ATP-binding protein MdlB	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf01543g06031.1	sp|O35685|NUDC_MOUSE	*-*-	Nuclear migration protein nudC	IPR008978 (HSP20-like chaperone)	
Niben101Scf26781g00006.1	sp|F4I7L1|TRB4_ARATH	****	Telomere repeat-binding factor 4	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf02721g04014.1	ref|NP_172002.1|	***-	dentin sialoph [Arabidopsis thaliana]		
Niben101Scf00563g01001.1	sp|Q9ZNU2|NAC18_ARATH	*-*-	NAC domain-containing protein 18	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf17776g00004.1	sp|O24606|EIN3_ARATH	***-	Protein ETHYLENE INSENSITIVE 3	IPR023278 (Ethylene insensitive 3-like protein, DNA-binding domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf04861g00027.1	AT2G21470.2	****	SUMO-activating enzyme 2 LENGTH=700	IPR016040 (NAD(P)-binding domain), IPR023280 (Ubiquitin-like 1 activating enzyme, catalytic cysteine domain), IPR028077 (Ubiquitin/SUMO-activating enzyme ubiquitin-like domain)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0006464 (cellular protein modification process), GO:0008641 (small protein activating enzyme activity)
Niben101Scf03673g04010.1	AT2G17200.1	***-	ubiquitin family protein LENGTH=551	IPR009060 (UBA-like), IPR015496 (Ubiquilin), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf15666g00007.1			Unknown protein		
Niben101Scf00792g03002.1	sp|Q84K00|NAC78_ARATH	*-*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07339g02012.1	sp|Q500W7|PIGM_ARATH	****	GPI mannosyltransferase 1	IPR007704 (Mannosyltransferase, DXD)	GO:0005789 (endoplasmic reticulum membrane), GO:0006506 (GPI anchor biosynthetic process), GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00495g00003.1	sp|Q8G4X4|CLPB_BIFLO	*-*-	Chaperone protein ClpB	IPR001270 (ClpA/B family), IPR019489 (Clp ATPase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028299 (ClpA/B, conserved site 2)	GO:0005524 (ATP binding)
Niben101Scf04411g03016.1	gb|KEH28241.1|	--*-	GASA/GAST/Snakin [Medicago truncatula]		
Niben101Scf01252g04015.1	dbj|BAD26399.1|	****	membrane transport protein-like [Oryza sativa Japonica Group]	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Ctg01318g00001.1	AT5G54880.1	*-*-	DTW domain-containing protein LENGTH=394	IPR005636 (DTW)	
Niben101Scf02445g02002.1	sp|Q9STX3|GID2_ARATH	--*-	F-box protein GID2		
Niben101Scf02137g00005.1	ref|WP_032853289.1|	****	glycosyl hydrolase family 43 [Bacteroides sp. D2]	IPR006710 (Glycoside hydrolase, family 43), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09234g03018.1	sp|O04659|PP398_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf14042g00001.1	AT2G39710.1	***-	Eukaryotic aspartyl protease family protein LENGTH=442	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05536g00003.1	sp|B1I6T1|RS6_DESAP	-**-	30S ribosomal protein S6	IPR000529 (Ribosomal protein S6), IPR014717 (Translation elongation factor EF1B/ribosomal protein S6)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf01072g03040.1	AT4G17610.1	*-*-	tRNA/rRNA methyltransferase (SpoU) family protein LENGTH=1850		
Niben101Scf14118g00011.1	sp|Q66HG1|DMTF1_RAT	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00414g05014.1	sp|Q9XJ66|MAD22_ORYSJ	*-*-	MADS-box transcription factor 22	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00155g00008.1	sp|B1I3J6|DXS_DESAP	*-*-	1-deoxy-D-xylulose-5-phosphate synthase	IPR005475 (Transketolase-like, pyrimidine-binding domain), IPR005476 (Transketolase, C-terminal), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04760g02014.1	tpg|DAA38869.1|	--*-	TPA: hypothetical protein ZEAMMB73_975829 [Zea mays]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf01145g03002.1	sp|Q6AWY4|GRF5_ORYSJ	***-	Growth-regulating factor 5	IPR014977 (WRC)	
Niben101Scf06646g00001.1	AT4G11560.1	*-*-	bromo-adjacent homology (BAH) domain-containing protein LENGTH=587		
Niben101Scf01689g03018.1	sp|Q41238|LOX16_SOLTU	*-*-	Linoleate 9S-lipoxygenase 6	IPR000907 (Lipoxygenase), IPR008976 (Lipase/lipooxygenase, PLAT/LH2), IPR027433 (Lipoxygenase, domain 3)	GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04655g02009.1	sp|A0A330|PSBD_COFAR	*-**	Photosystem II D2 protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf21301g00011.1	AT1G05990.1	****	EF hand calcium-binding protein family LENGTH=150	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01911g00001.1	sp|Q8LEJ6|FLA11_ARATH	***-	Fasciclin-like arabinogalactan protein 11	IPR000782 (FAS1 domain)	
Niben101Scf08028g00005.1	sp|Q9ZNU2|NAC18_ARATH	*-*-	NAC domain-containing protein 18	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06955g01002.1	AT4G00990.1	***-	Transcription factor jumonji (jmjC) domain-containing protein LENGTH=840	IPR003347 (JmjC domain)	
Niben101Scf00024g03009.1			Unknown protein		
Niben101Scf03600g04008.1	AT5G40760.1	****	glucose-6-phosphate dehydrogenase 6 LENGTH=515	IPR001282 (Glucose-6-phosphate dehydrogenase)	GO:0004345 (glucose-6-phosphate dehydrogenase activity), GO:0006006 (glucose metabolic process), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01982g01011.1	sp|B8DRU2|RLMN_DESVM	****	Dual-specificity RNA methyltransferase RlmN	IPR004383 (Ribosomal RNA large subunit methyltransferase RlmN/Cfr), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0006364 (rRNA processing), GO:0008173 (RNA methyltransferase activity), GO:0030488 (tRNA methylation), GO:0051536 (iron-sulfur cluster binding), GO:0070475 (rRNA base methylation)
Niben101Scf15536g03009.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf11778g01027.1	gb|ACG43287.1|	*-*-	COX VIIa-like protein [Zea mays]	IPR003177 (Cytochrome c oxidase, subunit VIIa)	GO:0004129 (cytochrome-c oxidase activity), GO:0005746 (mitochondrial respiratory chain), GO:0009055 (electron carrier activity)
Niben101Scf08973g00012.1	sp|P14232|TGA1A_TOBAC	****	TGACG-sequence-specific DNA-binding protein TGA-1A	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06305g01018.1			Unknown protein		
Niben101Scf00858g01009.1	sp|Q0TMQ7|RL24_CLOP1	***-	50S ribosomal protein L24	IPR003256 (Ribosomal protein L24)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03706g02015.1	AT3G16850.1	***-	Pectin lyase-like superfamily protein LENGTH=455	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01111g00007.1	emb|CDY68810.1|	***-	BnaCnng60640D [Brassica napus]		
Niben101Scf07440g02016.1	ref|NP_001148114.1|	****	transferase, transferring glycosyl groups precursor [Zea mays] gb|ACG29772.1| transferase, transferring glycosyl groups [Zea mays]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf00435g02010.1	AT1G50700.1	****	calcium-dependent protein kinase 33 LENGTH=521	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02654g00002.1	ref|NP_001053015.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf02972g07003.1	sp|Q6P3Q4|STK4_XENTR	*-**	Serine/threonine-protein kinase 4	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02791g01002.1	ref|NP_191672.1|	****	alpha-1,4-galacturon [Arabidopsis thaliana] emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gb|AHL38722.1| glycosyltransferase, partial [Arabidopsis thaliana]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf15158g00008.1	gb|KEH24534.1|	--*-	stress regulated protein [Medicago truncatula]		
Niben101Ctg13943g00002.1	AT5G02970.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=514	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07036g00004.1	sp|P52948|NUP98_HUMAN	*-**	Nuclear pore complex protein Nup98-Nup96	IPR007230 (Peptidase S59, nucleoporin)	GO:0005643 (nuclear pore), GO:0006810 (transport)
Niben101Scf04053g01004.1	sp|A6MFK9|CRVP_DEMVE	***-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf03773g00001.1	sp|Q91W82|UB2E2_MOUSE	***-	Ubiquitin-conjugating enzyme E2 E2	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf02971g01006.1	sp|Q8LE98|ICR1_ARATH	***-	Interactor of constitutive active ROPs 1		
Niben101Scf07109g00001.1	sp|A2Y9X7|PSA4A_ORYSI	****	Proteasome subunit alpha type-4-1	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf08560g01018.1			Unknown protein		
Niben101Scf08088g03014.1	sp|Q3T134|SPCS1_BOVIN	****	Signal peptidase complex subunit 1	IPR009542 (Microsomal signal peptidase 12kDa subunit)	GO:0005787 (signal peptidase complex), GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf01382g05011.1	sp|Q89AF9|DEAD_BUCBP	****	ATP-dependent RNA helicase DeaD	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf00366g09001.1	gb|ADZ73426.1|	*-*-	B-zip transcription factor [Vitis pseudoreticulata]		
Niben101Scf00712g01018.1	sp|O48837|LRKS2_ARATH	--*-	Receptor like protein kinase S.2		
Niben101Scf02534g00011.1	sp|Q91V83|TTI1_MOUSE	*-*-	TELO2-interacting protein 1 homolog	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00941g02003.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf16105g00008.1	ref|XP_002523552.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38891.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08127g08009.1	sp|Q9FWA3|6GPD3_ARATH	****	6-phosphogluconate dehydrogenase, decarboxylating 3	IPR006113 (6-phosphogluconate dehydrogenase, decarboxylating), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050661 (NADP binding), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03460g04007.1	sp|Q9FG35|TBR_ARATH	*-*-	Protein trichome birefringence	IPR026057 (PC-Esterase)	
Niben101Scf00682g00004.1	sp|A2XG55|LEA1_ORYSI	*-*-	Late embryogenesis abundant protein 1	IPR004238 (Late embryogenesis abundant protein, LEA-3)	
Niben101Scf04960g00001.1	AT3G49950.1	***-	GRAS family transcription factor LENGTH=410	IPR005202 (Transcription factor GRAS)	
Niben101Scf13005g00009.1	AT4G16100.1	***-	Protein of unknown function (DUF789) LENGTH=394	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf06183g05002.1	sp|A2VDN6|SF3A1_BOVIN	*-*-	Splicing factor 3A subunit 1	IPR000061 (SWAP/Surp), IPR022030 (Pre-mRNA splicing factor PRP21-like protein)	GO:0003723 (RNA binding), GO:0006396 (RNA processing)
Niben101Scf05610g00002.1	sp|B5DE69|CHD8_XENTR	*-**	Chromodomain-helicase-DNA-binding protein 8	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf05346g09008.1	sp|A4IG72|TGFA1_DANRE	***-	Transforming growth factor-beta receptor-associated protein 1 homolog	IPR000547 (Clathrin, heavy chain/VPS, 7-fold repeat), IPR001180 (Citron-like), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR019452 (Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1), IPR019453 (Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2)	GO:0005083 (small GTPase regulator activity), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport)
Niben101Scf01184g12004.1	sp|A2XDK8|U496A_ORYSI	***-	UPF0496 protein 1	IPR007749 (Protein of unknown function DUF677)	
Niben101Scf06290g00005.1	AT2G25760.2	****	Protein kinase family protein LENGTH=676	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01166g18014.1	AT3G32047.1	*-*-	Cytochrome P450 superfamily protein LENGTH=502	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf18879g02003.1	AT3G19570.2	*-*-	Family of unknown function (DUF566) LENGTH=644	IPR007573 (Protein of unknown function DUF566)	
Niben101Scf03856g06028.1	sp|B3GS44|LRE_ARATH	***-	GPI-anchored protein LORELEI		
Niben101Scf03236g03005.1			Unknown protein		
Niben101Scf00059g03006.1	gb|KEH24007.1|	***-	copper chaperone [Medicago truncatula]		
Niben101Scf10055g10007.1	gb|AET02817.2|	--*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf03848g07007.1			Unknown protein		
Niben101Scf00069g02013.1	sp|P46423|GSTF_HYOMU	***-	Glutathione S-transferase	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	
Niben101Scf13289g01004.1	sp|Q725M6|DNAJ_DESVH	--*-	Chaperone protein DnaJ		
Niben101Scf18637g01002.1	AT5G64430.1	***-	Octicosapeptide/Phox/Bem1p family protein LENGTH=513	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf03026g01009.1	sp|P24792|ASO_CUCMA	***-	L-ascorbate oxidase	IPR017760 (L-ascorbate oxidase, plants)	GO:0005507 (copper ion binding), GO:0005576 (extracellular region), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01451g04016.1	ref|WP_009632881.1|	--*-	Protein of unknown function (DUF2996) [Synechocystis sp. PCC 7509]	IPR021374 (Protein of unknown function DUF2996)	
Niben101Scf00551g06004.1	AT4G29480.1	****	Mitochondrial ATP synthase subunit G protein LENGTH=122	IPR006808 (ATPase, F0 complex, subunit G, mitochondrial)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf02004g00028.1	sp|Q09YJ3|CTTB2_MUNMU	*-**	Cortactin-binding protein 2	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00033g07014.1	sp|Q9SIT5|CHX15_ARATH	****	Cation/H(+) antiporter 15	IPR006153 (Cation/H+ exchanger), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02852g01012.1	AT5G15802.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=99		
Niben101Scf02455g03030.1			Unknown protein		
Niben101Scf04223g00001.1	AT4G34950.1	***-	Major facilitator superfamily protein LENGTH=567	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf13549g00004.1	sp|Q9ZNV9|AHP1_ARATH	***-	Histidine-containing phosphotransfer protein 1	IPR008207 (Signal transduction histidine kinase, phosphotransfer (Hpt) domain)	GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity)
Niben101Scf00254g00010.1	AT1G63940.2	****	monodehydroascorbate reductase 6 LENGTH=493	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07638g02002.1	AT1G62310.1	*-*-	transcription factor jumonji (jmjC) domain-containing protein LENGTH=883		
Niben101Scf16152g00007.1	sp|Q556Y4|KC1_DICDI	****	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02182g02003.1	sp|Q9LQQ4|H2B1_ARATH	***-	Histone H2B.1	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	
Niben101Scf01418g03003.1	sp|Q9LTV8|PP224_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf11334g01002.1			Unknown protein		
Niben101Scf01042g02013.1	AT4G18400.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=107		
Niben101Scf00960g10006.1			Unknown protein		
Niben101Scf06078g03013.1	ref|XP_003625981.1|	--*-	Chromodomain-helicase-DNA-binding protein [Medicago truncatula] gb|AES82199.1| RING/FYVE/PHD zinc finger protein [Medicago truncatula]		
Niben101Scf01964g10002.1	sp|Q96321|IMA1_ARATH	***-	Importin subunit alpha-1	IPR002652 (Importin-alpha, importin-beta-binding domain), IPR016024 (Armadillo-type fold), IPR024931 (Importin subunit alpha)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006606 (protein import into nucleus), GO:0008565 (protein transporter activity)
Niben101Scf02937g08009.1	ref|WP_026793646.1|	*-*-	MULTISPECIES: hypothetical protein [Planktothrix]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00765g03005.1	AT1G64850.1	*-**	Calcium-binding EF hand family protein LENGTH=162	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01111g01004.1	sp|Q93ZQ5|SPXM3_ARATH	****	SPX domain-containing membrane protein	IPR004331 (SPX, N-terminal), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf09516g00012.1	AT4G22756.1	***-	sterol C4-methyl oxidase 1-2 LENGTH=299	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05298g04005.1			Unknown protein		
Niben101Scf04740g00007.1	sp|Q9M2Q6|SPL15_ARATH	****	Squamosa promoter-binding-like protein 15	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf02354g04003.1	sp|Q54X82|AP1B_DICDI	*-*-	AP-1 complex subunit beta	IPR002553 (Clathrin/coatomer adaptor, adaptin-like, N-terminal), IPR016024 (Armadillo-type fold), IPR026739 (AP complex subunit beta)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf06846g02009.1	tpg|DAA56745.1|	***-	TPA: hypothetical protein ZEAMMB73_148136 [Zea mays]		
Niben101Scf16197g03005.1	AT3G59080.1	***-	Eukaryotic aspartyl protease family protein LENGTH=535	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Ctg16206g00003.1	ref|XP_007016530.1|	***-	TOX high mobility group box family member 4-A, putative isoform 1 [Theobroma cacao] gb|EOY34149.1| TOX high mobility group box family member 4-A, putative isoform 1 [Theobroma cacao]	IPR012862 (Protein of unknown function DUF1635)	
Niben101Scf10713g00007.1	AT5G12040.1	*-*-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein LENGTH=369	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf04993g06006.1	ref|XP_003608998.1|	--*-	F-box protein [Medicago truncatula]		
Niben101Scf08333g07027.1			Unknown protein		
Niben101Scf04350g03016.1	sp|Q75K81|C3H36_ORYSJ	*-*-	Zinc finger CCCH domain-containing protein 36		
Niben101Scf05634g01009.1	sp|Q9UTK8|GMT_SCHPO	--*-	GDP-mannose transporter	IPR004853 (Triose-phosphate transporter domain), IPR029665 (GDP-mannose transporter GONST3, plant)	GO:0005794 (Golgi apparatus), GO:0015780 (nucleotide-sugar transport)
Niben101Scf00470g04002.1	sp|O82337|AGP16_ARATH	*-*-	Arabinogalactan peptide 16	IPR009424 (Arabinogalactan peptide, AGP)	
Niben101Scf04300g04001.1	sp|Q38W94|DNAJ_LACSS	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf00332g05015.1	sp|A8MQA3|PP330_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04706g01030.1	sp|Q5XIX0|DJC14_RAT	*-*-	DnaJ homolog subfamily C member 14	IPR001623 (DnaJ domain)	
Niben101Scf10015g01008.1	ref|XP_007009390.1|	*-*-	IKI3 family protein isoform 4 [Theobroma cacao] gb|EOY18200.1| IKI3 family protein isoform 4 [Theobroma cacao]		
Niben101Scf07691g00013.1	sp|Q9M7X7|RL291_ARATH	***-	60S ribosomal protein L29-1	IPR002673 (Ribosomal protein L29e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00503g10003.1	sp|O04616|CUT1A_ARATH	***-	Protein CURVATURE THYLAKOID 1A, chloroplastic	IPR025564 (Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain)	
Niben101Scf02829g09016.1	sp|Q43358|VCL_THECC	***-	Vicilin	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf03779g05008.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf15372g00004.1	sp|O48520|DPOD2_ARATH	*-*-	DNA polymerase delta small subunit	IPR024826 (DNA polymerase delta/II small subunit family)	
Niben101Scf02792g01032.1	sp|O34392|YTRE_BACSU	*-**	ABC transporter ATP-binding protein YtrE	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf01100g04004.1	emb|CDY00858.1|	***-	BnaCnng00580D [Brassica napus]		
Niben101Scf12725g00030.1	sp|Q8W575|CSN3_ARATH	*-*-	COP9 signalosome complex subunit 3	IPR000717 (Proteasome component (PCI) domain)	GO:0005515 (protein binding)
Niben101Scf04102g03015.1	sp|Q9M0I2|EXPB3_ARATH	***-	Expansin-B3	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0019953 (sexual reproduction)
Niben101Scf04187g01012.1	sp|Q5ZJL8|ABHDD_CHICK	***-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf36671g00004.1	ref|XP_003606551.1|	*-*-	DNA-directed RNA polymerase [Medicago truncatula]		
Niben101Scf02646g02009.1	sp|F1MCA7|LRRC7_BOVIN	*-*-	Leucine-rich repeat-containing protein 7	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf04286g01033.1	sp|B0KCK8|RL29_THEP3	--*-	50S ribosomal protein L29	IPR001854 (Ribosomal protein L29)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf09242g02014.1	sp|Q86Y33|CD20B_HUMAN	*-*-	Cell division cycle protein 20 homolog B	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00723g00011.1	AT5G51120.2	****	polyadenylate-binding protein 1 LENGTH=265	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00960g11004.1	sp|O04722|SUT21_ARATH	****	Sulfate transporter 2.1	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf13843g00004.1	sp|Q9XEE2|ANXD2_ARATH	***-	Annexin D2	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf00852g00003.1	sp|A3PGS3|GREA_RHOS1	--*-	Transcription elongation factor GreA		
Niben101Scf01676g02004.1	sp|Q74LI0|RSMA_LACJO	*-**	Ribosomal RNA small subunit methyltransferase A	IPR001737 (Ribosomal RNA adenine methyltransferase KsgA/Erm), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0000154 (rRNA modification), GO:0000179 (rRNA (adenine-N6,N6-)-dimethyltransferase activity), GO:0008649 (rRNA methyltransferase activity)
Niben101Scf01732g02009.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01563g03005.1	sp|O42993|FKBP_SCHPO	--*-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf07160g00010.1	AT4G38810.2	****	Calcium-binding EF-hand family protein LENGTH=375	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03100g01022.1	AT2G43290.1	****	Calcium-binding EF-hand family protein LENGTH=215	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02897g02017.1	sp|Q8L8A7|GRF4_ARATH	***-	Growth-regulating factor 4	IPR014977 (WRC)	
Niben101Scf00286g00002.1	sp|Q9LXM8|RLA24_ARATH	--*-	60S acidic ribosomal protein P2-4	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf12160g01003.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf03565g05001.1	sp|Q9SH60|PP103_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03262g01001.1	sp|Q6PDZ2|TAF1C_MOUSE	--*-	TATA box-binding protein-associated factor RNA polymerase I subunit C		
Niben101Scf01201g00011.1	sp|Q4QSC8|SGO1_MAIZE	*-*-	Shugoshin-1	IPR011515 (Shugoshin, C-terminal)	GO:0000775 (chromosome, centromeric region), GO:0005634 (nucleus), GO:0045132 (meiotic chromosome segregation)
Niben101Scf03964g03005.1	AT4G30440.1	****	UDP-D-glucuronate 4-epimerase 1 LENGTH=429	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf11944g00013.1	AT5G67150.1	****	HXXXD-type acyl-transferase family protein LENGTH=448	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf06058g00016.1	AT1G56500.1	*-**	haloacid dehalogenase-like hydrolase family protein LENGTH=1055	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf04745g07008.1	sp|O43414|ERI3_HUMAN	***-	ERI1 exoribonuclease 3	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf03738g01007.1			Unknown protein		
Niben101Scf02929g06102.1	gb|ADV15953.1|	*-*-	maturase, partial (mitochondrion) [Syringa vulgaris]		
Niben101Scf02243g05003.1	sp|Q8GWV5|PUB3_ARATH	*-*-	U-box domain-containing protein 3	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf03809g01007.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01420g02006.1	AT5G63930.1	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=1102	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf01695g06008.1	AT3G53440.1	*-*-	Homeodomain-like superfamily protein LENGTH=512	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf01055g01011.1	emb|CDY66538.1|	*-*-	BnaCnng51290D [Brassica napus]		
Niben101Scf23427g00008.1	sp|Q921Q3|ALG1_MOUSE	***-	Chitobiosyldiphosphodolichol beta-mannosyltransferase	IPR026051 (Asparagine-linked glycosylation protein 1-like), IPR028098 (Glycosyltransferase subfamily 4, N-terminal domain)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf00375g01018.1	sp|B5QVR2|RIHA_SALEP	***-	Pyrimidine-specific ribonucleoside hydrolase RihA	IPR001910 (Inosine/uridine-preferring nucleoside hydrolase domain), IPR023186 (Inosine/uridine-preferring nucleoside hydrolase)	
Niben101Scf00375g02004.1	sp|Q8S340|PPA22_ARATH	***-	Purple acid phosphatase 22	IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf12953g00005.1	sp|P93045|BSH_ARATH	****	Chromatin structure-remodeling complex protein BSH	IPR006939 (SNF5/SMARCB1/INI1)	GO:0000228 (nuclear chromosome), GO:0006338 (chromatin remodeling)
Niben101Scf05307g01005.1	sp|O22938|Y2182_ARATH	***-	Leucine-rich repeat receptor-like tyrosine-protein kinase	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf03570g02006.1	sp|Q8H1S4|ACCH3_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 3	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03389g00022.1	sp|Q9LYZ4|FBL79_ARATH	*-*-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01013g08010.1	gb|ABG00880.1|	***-	disease resistance protein [Arabidopsis thaliana]		
Niben101Scf13683g01020.1	AT3G50120.1	***-	Plant protein of unknown function (DUF247) LENGTH=531	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf04722g02005.1	sp|Q9FFF5|ALFL1_ARATH	***-	PHD finger protein ALFIN-LIKE 1	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR021998 (Alfin)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0042393 (histone binding)
Niben101Scf05553g03005.1	sp|Q9LKB9|MYO6_ARATH	*-*-	Myosin-6		
Niben101Scf02760g02010.1	sp|P29916|NQO4_PARDE	*-**	NADH-quinone oxidoreductase subunit 4	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02805g07013.1			Unknown protein		
Niben101Scf09620g02006.1	ref|WP_026786638.1|	***-	MULTISPECIES: hypothetical protein [Planktothrix]	IPR025067 (Protein of unknown function DUF4079)	
Niben101Scf06458g01023.1	gb|ABB47548.2|	***-	Colon cancer-associated protein Mic1-like containing protein, expressed [Oryza sativa Japonica Group]	IPR009755 (Colon cancer-associated Mic1-like)	
Niben101Scf06560g02002.1	sp|Q9SRU2|BIG_ARATH	*-*-	Auxin transport protein BIG	IPR000433 (Zinc finger, ZZ-type), IPR003126 (Zinc finger, N-recognin), IPR016024 (Armadillo-type fold), IPR025704 (E3 ubiquitin ligase, UBR4)	GO:0005488 (binding), GO:0008270 (zinc ion binding)
Niben101Scf15817g00001.1	sp|P11383|RBL_WHEAT	*-**	Ribulose bisphosphate carboxylase large chain	IPR017443 (Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf00279g02023.1	sp|P25387|GBLP_CHLRE	****	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf09232g00001.1			Unknown protein		
Niben101Scf04500g04013.1	sp|Q9M088|E135_ARATH	***-	Glucan endo-1,3-beta-glucosidase 5	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01243g02006.1	AT1G10470.1	*-*-	response regulator 4 LENGTH=259	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf14805g02006.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06737g00024.1	sp|Q93ZX1|RFC4_ARATH	*-**	Replication factor C subunit 4	IPR012763 (DNA polymerase III, subunit gamma/ tau), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0005524 (ATP binding), GO:0006260 (DNA replication), GO:0009360 (DNA polymerase III complex)
Niben101Scf01412g00019.1	gb|AAF70826.1|AF157556_1	***-	meiotic asynaptic mutant 1 [Arabidopsis thaliana]	IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf15817g00003.1	sp|P31562|ACCD_CUSRE	***-	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	IPR029045 (ClpP/crotonase-like domain)	
Niben101Scf06560g02004.1	sp|Q6MQS6|DNAE2_BDEBA	--*-	Error-prone DNA polymerase		
Niben101Scf03254g11014.1	AT5G40540.1	****	Protein kinase superfamily protein LENGTH=353	IPR011009 (Protein kinase-like domain), IPR015784 (Putative serine/threonine-protein kinase, plants)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04673g02008.1			Unknown protein		
Niben101Scf04172g02016.1	tpg|DAA37023.1|	***-	TPA: hypothetical protein ZEAMMB73_248209 [Zea mays]	IPR021883 (Protein of unknown function DUF3493)	
Niben101Scf01804g00044.1			Unknown protein		
Niben101Scf07825g02001.1	AT5G12460.1	***-	Protein of unknown function (DUF604) LENGTH=441	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf06805g00005.1	sp|Q43007|PLDA1_ORYSJ	*-*-	Phospholipase D alpha 1	IPR015679 (Phospholipase D family)	
Niben101Scf14151g00008.1	sp|A5GFW7|RTF2_PIG	*-*-	Protein RTF2 homolog	IPR006735 (Protein of unknown function DUF602), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027799 (Replication termination factor 2, RING-finger), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf03109g00004.1	sp|P49637|R27A3_ARATH	*-*-	60S ribosomal protein L27a-3		
Niben101Scf04717g02003.1	gb|KEH24214.1|	***-	harpin-induced-like protein [Medicago truncatula]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf01695g06006.1	sp|A5GWJ9|RL7_SYNR3	*-*-	50S ribosomal protein L7/L12	IPR000206 (Ribosomal protein L7/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04102g03016.1	sp|Q9SKU1|CLC1_ARATH	*-**	Clathrin light chain 1	IPR000996 (Clathrin light chain)	GO:0005198 (structural molecule activity), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030130 (clathrin coat of trans-Golgi network vesicle), GO:0030132 (clathrin coat of coated pit)
Niben101Scf06998g00017.1	sp|P46800|GBLP_DICDI	****	Guanine nucleotide-binding protein subunit beta-like protein	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf06117g00003.1			Unknown protein		
Niben101Scf09242g02012.1	gb|ABS72192.1|	--*-	mitochondrial NADH-ubiquinone oxidoreductase [Corchorus olitorius]		
Niben101Scf02812g02011.1	sp|Q46909|YGCS_ECOLI	--**	Inner membrane metabolite transport protein YgcS	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf05491g02004.1	AT1G08320.1	****	bZIP transcription factor family protein LENGTH=481	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf12216g00004.1	emb|CDY45913.1|	***-	BnaAnng07940D [Brassica napus]		
Niben101Scf03548g02026.1			Unknown protein		
Niben101Scf03455g01008.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg16055g00003.1	sp|Q9LT91|PER66_ARATH	*-**	Peroxidase 66	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03370g09001.1	sp|Q5RCF8|DHRS4_PONAB	****	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf14642g02007.1	AT1G43770.2	*-*-	RING/FYVE/PHD zinc finger superfamily protein LENGTH=431		
Niben101Scf11497g00001.1			Unknown protein		
Niben101Scf03595g08012.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07482g01002.1	sp|Q9LT79|PUB25_ARATH	***-	U-box domain-containing protein 25	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf14436g00007.1	sp|Q9PCH7|GPDA_XYLFA	****	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	IPR006168 (Glycerol-3-phosphate dehydrogenase, NAD-dependent), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004367 (glycerol-3-phosphate dehydrogenase [NAD+] activity), GO:0005737 (cytoplasm), GO:0005975 (carbohydrate metabolic process), GO:0006072 (glycerol-3-phosphate metabolic process), GO:0009331 (glycerol-3-phosphate dehydrogenase complex), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0046168 (glycerol-3-phosphate catabolic process), GO:0050662 (coenzyme binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07365g01025.1	AT5G60070.1	*-*-	ankyrin repeat family protein LENGTH=548	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf23113g00026.1	ref|XP_002520880.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF41589.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11689g01011.1	sp|Q8W469|SIPL2_ARATH	****	Signal peptide peptidase-like 2	IPR003137 (Protease-associated domain, PA), IPR006639 (Presenilin/signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf08182g02014.1	sp|G2K045|DNAJ_LISM4	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf00231g03009.1	emb|CDY66152.1|	***-	BnaAnng21740D [Brassica napus]		
Niben101Scf15632g00019.1	AT3G62900.1	*-*-	CW-type Zinc Finger LENGTH=1465		
Niben101Scf12953g00006.1	emb|CDY41498.1|	***-	BnaA08g21000D [Brassica napus]		
Niben101Scf01732g02007.1	AT5G07990.1	*-*-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00107g01005.1	sp|O04899|CAMT5_TOBAC	*-**	Caffeoyl-CoA O-methyltransferase 5	IPR002935 (O-methyltransferase, family 3), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008171 (O-methyltransferase activity)
Niben101Scf08194g02026.1	sp|C7G304|GOLS2_SOLLC	***-	Galactinol synthase 2	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf02839g00002.1	sp|O95562|SFT2B_HUMAN	****	Vesicle transport protein SFT2B	IPR007305 (Vesicle transport protein, Got1/SFT2-like)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf07783g01016.1	ref|NP_001042723.2|	*-*-	[Oryza sativa Japonica Group] dbj|BAF04637.2| [Oryza sativa Japonica Group]		
Niben101Scf08504g03001.1	ref|XP_003597773.1|	--*-	NAD(P)H-quinone oxidoreductase chain [Medicago truncatula] gb|AES68024.1| NADH-ubiquinone/plastoquinone (complex I) protein [Medicago truncatula]		
Niben101Scf19584g00018.1	sp|Q39644|LEA5_CITSI	***-	Late embryogenesis abundant protein Lea5	IPR004926 (Late embryogenesis abundant protein, LEA-5)	GO:0006950 (response to stress)
Niben101Scf03029g01012.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02646g02007.1	sp|Q9FNP8|RS193_ARATH	***-	40S ribosomal protein S19-3	IPR001266 (Ribosomal protein S19e), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00130g05001.1	sp|Q7PC81|AB43G_ARATH	*-*-	ABC transporter G family member 43	IPR002885 (Pentatricopeptide repeat), IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR013581 (Plant PDR ABC transporter associated), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf04233g01012.1	sp|Q2LVL0|MSBA_SYNAS	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf10224g01019.1	AT1G23480.1	***-	cellulose synthase-like A3 LENGTH=556	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf02348g12003.1	sp|Q6EP49|MAD27_ORYSJ	*-**	MADS-box transcription factor 27	IPR002487 (Transcription factor, K-box)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01502g00007.1	sp|Q54YY1|SCAI_DICDI	*-*-	Protein SCAI homolog	IPR022709 (Protein SCAI)	GO:0003714 (transcription corepressor activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf02404g01016.1			Unknown protein		
Niben101Scf02375g08001.1	gb|EEQ87690.1|	--*-	conserved hypothetical protein [Ajellomyces dermatitidis ER-3]		
Niben101Scf19733g00003.1	ref|XP_007024745.1|	***-	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao] gb|EOY27367.1| Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf39477g00003.1	AT3G48660.1	***-	Protein of unknown function (DUF 3339) LENGTH=89	IPR021775 (Protein of unknown function DUF3339)	
Niben101Scf04724g03011.1	sp|P0C5A3|DPNP_ORYSA	****	3'(2'),5'-bisphosphate nucleotidase	IPR000760 (Inositol monophosphatase)	GO:0006790 (sulfur compound metabolic process), GO:0008441 (3'(2'),5'-bisphosphate nucleotidase activity), GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf00851g01002.1	sp|Q969V3|NCLN_HUMAN	***-	Nicalin	IPR007484 (Peptidase M28), IPR018247 (EF-Hand 1, calcium-binding site)	
Niben101Scf02812g01007.1	AT5G56840.1	*-*-	myb-like transcription factor family protein LENGTH=233	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03643g02042.1	sp|A5CCJ9|RS14_ORITB	--*-	30S ribosomal protein S14	IPR001209 (Ribosomal protein S14)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08680g02012.1	sp|Q9C9U0|PP118_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00631g01007.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02074g06001.1	sp|P14578|COX1_ORYSJ	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02621g00013.1	emb|CDY42197.1|	***-	BnaA01g25980D [Brassica napus]		
Niben101Scf00317g07007.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf00825g03008.1			Unknown protein		
Niben101Scf09705g00004.1	sp|A3N1C8|PFKA_ACTP2	*-**	ATP-dependent 6-phosphofructokinase	IPR000023 (Phosphofructokinase domain), IPR022953 (Phosphofructokinase)	GO:0003872 (6-phosphofructokinase activity), GO:0006002 (fructose 6-phosphate metabolic process), GO:0006096 (glycolytic process)
Niben101Scf00080g02007.1	ref|XP_002510079.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52266.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09698g00001.1	sp|O49564|CRK27_ARATH	*-**	Cysteine-rich receptor-like protein kinase 27	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05566g06004.1	sp|Q58DW6|RAB25_BOVIN	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf04114g00035.1	ref|YP_008999604.1|	*-*-	NADH dehydrogenase subunit 1 (mitochondrion) [Vaccinium macrocarpon] gb|AGX28817.1| NADH dehydrogenase subunit 1 (mitochondrion) [Vaccinium macrocarpon]		
Niben101Scf06171g00006.1	emb|CDY45228.1|	***-	BnaA07g12620D [Brassica napus]		
Niben101Scf07298g00002.1	gb|AAG31013.1|	--*-	tospovirus resistance protein A [Solanum lycopersicum]		
Niben101Scf02513g05010.1	sp|Q9XIV8|PERN1_TOBAC	****	Peroxidase N1	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03653g01028.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR002902 (Gnk2-homologous domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03056g01016.1	AT2G05260.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=358	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf10616g00009.1	sp|Q8NJ52|NTF2_DAVTA	*-**	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf03267g00035.1	gb|AIE42546.1|	***-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf01463g03011.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04019g07006.1	AT3G62900.1	*-**	CW-type Zinc Finger LENGTH=1465	IPR011124 (Zinc finger, CW-type)	GO:0008270 (zinc ion binding)
Niben101Scf02595g02007.1	sp|P63243|GBLP_BOVIN	-***	Guanine nucleotide-binding protein subunit beta-2-like 1	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00059g03004.1	sp|Q640M1|UT14A_MOUSE	--**	U3 small nucleolar RNA-associated protein 14 homolog A	IPR006709 (Small-subunit processome, Utp14)	GO:0006364 (rRNA processing), GO:0032040 (small-subunit processome)
Niben101Scf05916g02017.1	emb|CDX69692.1|	***-	BnaA10g20410D [Brassica napus]	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf03114g06005.1	AT5G52570.1	***-	beta-carotene hydroxylase 2 LENGTH=303	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06163g00008.1	sp|O24146|4CL2_TOBAC	*-*-	4-coumarate--CoA ligase 2	IPR025110 (AMP-binding enzyme C-terminal domain)	
Niben101Scf04624g00001.1	AT2G27770.1	***-	Plant protein of unknown function (DUF868) LENGTH=320	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf03323g01003.1	sp|A0R8E9|SYK_BACAH	*-**	Lysine--tRNA ligase	IPR012340 (Nucleic acid-binding, OB-fold), IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004824 (lysine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006430 (lysyl-tRNA aminoacylation)
Niben101Scf04553g00001.1	sp|Q9XGW1|AGO10_ARATH	--*-	Protein argonaute 10		
Niben101Scf02752g04007.1	gb|ABY71635.1|	*-*-	lysine-rich protein [Capsicum frutescens]		
Niben101Scf07393g00002.1	AT2G36630.1	***-	Sulfite exporter TauE/SafE family protein LENGTH=459	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf00635g00001.1	emb|CDY40257.1|	***-	BnaA07g09430D [Brassica napus]	IPR008581 (Protein of unknown function DUF863, plant)	
Niben101Scf04676g00001.1			Unknown protein		
Niben101Scf03550g00017.1	sp|Q8SSH3|TCPD_ENCCU	***-	T-complex protein 1 subunit delta	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf16152g00008.1	sp|Q9SLD2|DGAT1_ARATH	****	Diacylglycerol O-acyltransferase 1	IPR004299 (Membrane bound O-acyl transferase, MBOAT)	GO:0008374 (O-acyltransferase activity)
Niben101Scf03977g01008.1	AT1G62420.1	***-	Protein of unknown function (DUF506) LENGTH=283	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf10196g01014.1	gb|KEH18861.1|	*-*-	calmodulin-binding heat-shock protein [Medicago truncatula]		
Niben101Scf03080g02002.1	sp|Q3E7I6|GDL11_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf08242g01022.1	AT5G51160.1	***-	Ankyrin repeat family protein LENGTH=442	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	GO:0005515 (protein binding)
Niben101Scf02391g00012.1	AT1G61105.1	***-	Toll-Interleukin-Resistance (TIR) domain family protein LENGTH=188	IPR000157 (Toll/interleukin-1 receptor homology (TIR) domain)	GO:0005515 (protein binding), GO:0007165 (signal transduction)
Niben101Scf07040g00005.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00126g01010.1	sp|Q6GQD1|CYFP2_XENLA	***-	Cytoplasmic FMR1-interacting protein 2	IPR008081 (Cytoplasmic FMR1-interacting)	
Niben101Scf01388g01020.1	sp|Q8R550|SH3K1_MOUSE	--**	SH3 domain-containing kinase-binding protein 1	IPR001452 (SH3 domain)	GO:0005515 (protein binding)
Niben101Scf09973g00013.1	sp|O82012|HSP12_SOLPE	***-	17.6 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf11415g00001.1	AT5G14550.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=377	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf17651g00002.1	sp|Q9LVP9|VTI13_ARATH	****	Vesicle transport v-SNARE 13	IPR007705 (Vesicle transport v-SNARE, N-terminal), IPR010989 (t-SNARE)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf20077g00018.1	sp|O43001|SYJ1_SCHPO	*-**	Inositol-1,4,5-trisphosphate 5-phosphatase 1	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf01942g02006.1	sp|Q14HI8|TRUA_FRAT1	****	tRNA pseudouridine synthase A	IPR001406 (Pseudouridine synthase I, TruA), IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf07417g01015.1	sp|A7XUJ6|TRAF6_PIG	*-*-	TNF receptor-associated factor 6	IPR008974 (TRAF-like)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf00973g00001.1			Unknown protein		
Niben101Scf10482g01020.1	AT1G27060.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=386	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf00890g01020.1	sp|Q6A332|ALY3_ARATH	*-*-	Protein ALWAYS EARLY 3		
Niben101Scf05584g02005.1	AT2G46300.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=252		
Niben101Scf01274g03023.1			Unknown protein		
Niben101Scf06123g03004.1	sp|Q9STF0|LRKS3_ARATH	--*-	Receptor like protein kinase S.3		
Niben101Scf00570g05012.1	gb|AFN71045.1|	*-*-	cycloidea-like protein group 1A, partial [Lupinus microcarpus]	IPR005333 (Transcription factor, TCP)	
Niben101Scf05363g04005.1	sp|Q95K09|GCP5_MACFA	*-*-	Gamma-tubulin complex component 5	IPR007259 (Gamma-tubulin complex component protein)	GO:0000226 (microtubule cytoskeleton organization), GO:0000922 (spindle pole), GO:0005815 (microtubule organizing center)
Niben101Scf08446g03023.1	sp|B6IR01|RL21_RHOCS	--*-	50S ribosomal protein L21	IPR028909 (Ribosomal protein L21-like)	GO:0005840 (ribosome)
Niben101Scf16244g01002.1	AT5G06970.1	***-	Protein of unknown function (DUF810) LENGTH=1101	IPR008528 (Protein of unknown function DUF810)	
Niben101Scf16571g00002.1	sp|Q9C552|PUM23_ARATH	--*-	Pumilio homolog 23		
Niben101Scf00381g01002.1	AT2G33620.1	****	AT hook motif DNA-binding family protein LENGTH=351	IPR005175 (Domain of unknown function DUF296), IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Scf02340g02001.1	sp|Q33C48|RPOC2_NICTO	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf00592g11013.1	ref|XP_002519145.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF43356.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf06277g05018.1	sp|Q9M2A1|PP263_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf10015g10016.1	sp|Q9US05|BFR2_SCHPO	*-*-	Protein bfr2	IPR012617 (Apoptosis-antagonizing transcription factor, C-terminal)	GO:0005634 (nucleus)
Niben101Scf03435g01017.1	sp|P92948|CDC5L_ARATH	***-	Cell division cycle 5-like protein	IPR009057 (Homeodomain-like), IPR021786 (Domain of unknown function DUF3351)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08006g01005.1	sp|Q54TL0|KIF7_DICDI	*-**	Kinesin-related protein 7	IPR001752 (Kinesin motor domain), IPR010544 (Kinesin-related conserved domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf02470g01009.1	sp|Q97BG9|DNAJ_THEVO	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf02348g11001.1	sp|Q9SUG3|ITPK2_ARATH	****	Inositol-tetrakisphosphate 1-kinase 2	IPR008656 (Inositol-tetrakisphosphate 1-kinase)	GO:0000287 (magnesium ion binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0032957 (inositol trisphosphate metabolic process), GO:0047325 (inositol tetrakisphosphate 1-kinase activity), GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity), GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
Niben101Scf02015g04018.1	ref|XP_007046457.1|	*-*-	Trigalactosyldiacylglycerol 1 isoform 4 [Theobroma cacao] gb|EOX90614.1| Trigalactosyldiacylglycerol 1 isoform 4 [Theobroma cacao]	IPR019341 (Alpha/gamma-adaptin-binding protein p34)	
Niben101Scf01406g03021.1	AT3G54040.1	***-	PAR1 protein LENGTH=183	IPR009489 (PAR1)	
Niben101Scf02805g08007.1	AT5G38200.1	*-*-	Class I glutamine amidotransferase-like superfamily protein LENGTH=436		
Niben101Scf01931g07007.1	sp|Q9DCS3|MECR_MOUSE	*-**	Trans-2-enoyl-CoA reductase, mitochondrial	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03493g00022.1	sp|B9SXY8|CSPLE_RICCO	***-	CASP-like protein 4D1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf00539g06002.1	sp|Q9SH26|PP102_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01402g02030.1	AT3G48140.1	***-	B12D protein LENGTH=88	IPR010530 (NADH-ubiquinone reductase complex 1 MLRQ subunit)	
Niben101Scf02370g02008.1	sp|O04203|HSPR2_ARATH	***-	Nematode resistance protein-like HSPRO2	IPR009743 (Hs1pro-1, C-terminal), IPR009869 (Hs1pro-1, N-terminal)	
Niben101Scf16981g02005.1	sp|Q9SFZ3|BH110_ARATH	***-	Transcription factor bHLH110	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf06876g01040.1	sp|O81154|CYSK_SOLTU	*-*-	Cysteine synthase	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme)	
Niben101Scf06525g03005.1	AT2G37870.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=115	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02151g01001.1	sp|P19028|POL_FIVSD	--*-	Pol polyprotein		
Niben101Ctg04861g00002.1	gb|AGZ90705.1|	*-*-	maturase, partial (mitochondrion) [Forsskaolea angustifolia]	IPR000477 (Reverse transcriptase domain)	
Niben101Scf02791g01003.1	AT1G43900.1	****	Protein phosphatase 2C family protein LENGTH=371	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf08089g00005.1	AT5G13260.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=537		
Niben101Scf10381g03005.1	AT1G11260.1	****	sugar transporter 1 LENGTH=522	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf09885g01019.1	sp|Q8VY63|MPU12_ARATH	***-	Mannose-P-dolichol utilization defect 1 protein homolog 2	IPR016817 (Mannose-P-dolichol utilization defect 1 protein)	
Niben101Scf01154g14007.1	sp|Q6P4R8|NFRKB_HUMAN	*-*-	Nuclear factor related to kappa-B-binding protein	IPR024867 (Nuclear factor related to kappa-B-binding protein)	GO:0031011 (Ino80 complex)
Niben101Scf02060g07009.1	sp|Q22799|DYL1_CAEEL	***-	Dynein light chain 1, cytoplasmic	IPR001372 (Dynein light chain, type 1/2)	GO:0005875 (microtubule associated complex), GO:0007017 (microtubule-based process)
Niben101Scf11915g00015.1	sp|Q5JLY8|GOGA5_ORYSJ	*-*-	Golgin-84	IPR019177 (Golgin subfamily A member 5)	
Niben101Scf07716g00005.1	AT3G08600.1	***-	Protein of unknown function (DUF1191) LENGTH=316	IPR010605 (Protein of unknown function DUF1191)	
Niben101Scf04940g00003.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf09411g00009.1	sp|Q03701|CEBPZ_HUMAN	*-*-	CCAAT/enhancer-binding protein zeta	IPR005612 (CCAAT-binding factor)	
Niben101Scf10388g02006.1	sp|Q9FIZ7|OPLA_ARATH	*-*-	5-oxoprolinase	IPR003692 (Hydantoinase B/oxoprolinase)	GO:0003824 (catalytic activity)
Niben101Scf02929g03029.1			Unknown protein		
Niben101Scf03167g02028.1	sp|Q01JG2|YAB5_ORYSI	***-	Protein YABBY 5	IPR006780 (YABBY protein)	
Niben101Scf03255g01001.1	ref|XP_003637596.1|	*-*-	Sister chromatid cohesion protein PDS5-like protein [Medicago truncatula]		
Niben101Scf09654g03001.1	gb|AES70969.2|	***-	calmodulin-binding heat-shock protein [Medicago truncatula]	IPR005592 (Mono-/di-acylglycerol lipase, N-terminal), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0016042 (lipid catabolic process)
Niben101Scf17473g00005.1	sp|Q9BXM0|PRAX_HUMAN	*-*-	Periaxin		
Niben101Ctg14200g00001.1	AT5G53500.1	*-*-	Transducin/WD40 repeat-like superfamily protein LENGTH=654	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00592g14018.1	AT4G38380.1	***-	MATE efflux family protein LENGTH=560	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf16015g04005.1	AT4G31500.1	***-	cytochrome P450, family 83, subfamily B, polypeptide 1 LENGTH=499	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02340g10001.1	AT1G61150.1	***-	LisH and RanBPM domains containing protein LENGTH=243	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR013144 (CRA domain), IPR024964 (CTLH/CRA C-terminal to LisH motif domain)	GO:0005515 (protein binding)
Niben101Scf05634g02010.1	sp|P51831|FABG_BACSU	*-**	3-oxoacyl-[acyl-carrier-protein] reductase FabG	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf04633g01004.1	ref|XP_002524652.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37671.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07441g04001.1	sp|Q9M8X2|U1148_ARATH	***-	U11/U12 small nuclear ribonucleoprotein 48 kDa protein		
Niben101Scf02169g00003.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04692g00002.1	AT3G03590.1	*-*-	SWIB/MDM2 domain superfamily protein LENGTH=143	IPR003121 (SWIB/MDM2 domain)	GO:0005515 (protein binding)
Niben101Scf10997g02004.1	ref|NP_176509.1|	--*-	cystatin-related domain protein [Arabidopsis thaliana] hypothetical protein; 89904-88916 [Arabidopsis thaliana] gb|AEE34068.1| cystatin-related domain protein [Arabidopsis thaliana]		
Niben101Scf02435g00002.1	ref|XP_002531131.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF31251.1| conserved hypothetical protein [Ricinus communis]	IPR003772 (Protein of unknown function DUF177)	
Niben101Scf08718g00002.1	emb|CDX72709.1|	***-	BnaC07g47310D [Brassica napus]		
Niben101Scf05827g07003.1	gb|AFJ42378.1|	*-*-	erect panicle 2 protein, partial [Phacelurus digitatus]		
Niben101Scf07339g02014.1	AT3G51380.1	***-	IQ-domain 20 LENGTH=103	IPR000048 (IQ motif, EF-hand binding site), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf01455g00005.1	AT5G45100.1	*-**	SBP (S-ribonuclease binding protein) family protein LENGTH=294	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09365g00010.1	sp|Q9M907|PP217_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002625 (Smr protein/MutS2 C-terminal), IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08538g00005.1	AT4G30550.1	*-*-	Class I glutamine amidotransferase-like superfamily protein LENGTH=249	IPR029062 (Class I glutamine amidotransferase-like)	
Niben101Scf08899g00001.1	sp|Q9SYA6|RPBAL_ARATH	****	DNA-directed RNA polymerase subunit 10-like protein	IPR000268 (DNA-directed RNA polymerase, subunit N/Rpb10), IPR009057 (Homeodomain-like), IPR023580 (RNA polymerase subunit RPB10)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Ctg06060g00001.1	AT5G24380.1	*-*-	YELLOW STRIPE like 2 LENGTH=664	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf03461g00014.1	AT1G26650.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=335		
Niben101Scf02929g00062.1			Unknown protein		
Niben101Scf29588g00010.1	sp|Q9LXF2|PP385_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf08527g00002.1	ref|WP_013261573.1|	--**	heme ABC transporter permease [gamma proteobacterium HdN1] ref|YP_003810731.1| Heme exporter [gamma proteobacterium HdN1] emb|CBL45078.1| Heme exporter [gamma proteobacterium HdN1]	IPR003557 (Cytochrome c-type biogenesis protein CcmC)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf02527g01001.1	AT4G12340.1	*-*-	copper ion binding LENGTH=170	IPR009069 (Cysteine alpha-hairpin motif superfamily)	
Niben101Scf00773g08010.1	sp|Q94K00|TBL28_ARATH	***-	Protein trichome birefringence-like 28	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	GO:0050826 (response to freezing)
Niben101Scf00454g05009.1	sp|D8VPP5|AL11A_OLEEU	****	Pectinesterase 1	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf03515g00025.1			Unknown protein		
Niben101Scf06570g04006.1	sp|P16273|PRPX_HORVU	***-	Pathogen-related protein		
Niben101Scf04131g00007.1	AT4G31930.1	****	Mitochondrial glycoprotein family protein LENGTH=234	IPR003428 (Mitochondrial glycoprotein)	GO:0005759 (mitochondrial matrix)
Niben101Scf01559g01001.1	ref|NP_001053245.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf00163g03007.1	AT1G76500.1	*-*-	Predicted AT-hook DNA-binding family protein LENGTH=302	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf02626g08004.1			Unknown protein		
Niben101Scf00401g00009.1	sp|P35682|BD31C_ORYSJ	--*-	Protein BUD31 homolog 3		
Niben101Scf04109g03008.1	sp|Q9C996|GLIP6_ARATH	****	GDSL esterase/lipase 6	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016298 (lipase activity), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf07907g00013.1	ref|XP_007046980.1|	*-*-	Sugar transporter, putative [Theobroma cacao] gb|EOX91137.1| Sugar transporter, putative [Theobroma cacao]	IPR010608 (Protein of unknown function DUF1195)	
Niben101Scf00157g02002.1	sp|Q9T041|MAPT_ARATH	***-	Microtubule-associated protein TORTIFOLIA1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04808g00007.1	AT5G53010.1	****	calcium-transporting ATPase, putative LENGTH=1049	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain), IPR024750 (Calcium-transporting P-type ATPase, N-terminal autoinhibitory domain)	GO:0000166 (nucleotide binding), GO:0005388 (calcium-transporting ATPase activity), GO:0005516 (calmodulin binding), GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding), GO:0070588 (calcium ion transmembrane transport)
Niben101Scf05201g06021.1	sp|O24160|TGA21_TOBAC	****	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02537g06002.1	sp|Q9ZPE7|EXO_ARATH	***-	Protein EXORDIUM	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf02513g10006.1	sp|Q923W1|TGS1_MOUSE	*-*-	Trimethylguanosine synthase	IPR019012 (RNA cap guanine-N2 methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0001510 (RNA methylation), GO:0008168 (methyltransferase activity), GO:0009452 (7-methylguanosine RNA capping)
Niben101Scf09822g01005.1	gb|KDR23549.1|	--*-	RRP5-like protein [Zootermopsis nevadensis]		
Niben101Scf01191g06016.1	ref|NP_001062213.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf01063g00006.1	sp|Q84UQ3|C3H56_ORYSJ	***-	Zinc finger CCCH domain-containing protein 56	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf03374g05008.1	sp|Q54Y27|FKBP6_DICDI	--**	FK506-binding protein 6	IPR006636 (Heat shock chaperonin-binding), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00457g05011.1	sp|Q9ULW5|RAB26_HUMAN	***-	Ras-related protein Rab-26	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf01750g06025.1	AT1G03445.1	*-*-	Serine/threonine protein phosphatase family protein LENGTH=793	IPR015915 (Kelch-type beta propeller), IPR029052 (Metallo-dependent phosphatase-like)	GO:0005515 (protein binding), GO:0016787 (hydrolase activity)
Niben101Scf04473g01010.1	sp|Q8DLP3|ATPA_THEEB	*-**	ATP synthase subunit alpha	IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf11535g01026.1	sp|Q38831|IAA13_ARATH	*-*-	Auxin-responsive protein IAA13	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf11126g10002.1	sp|F4JN00|CSTR4_ARATH	***-	CMP-sialic acid transporter 4	IPR007271 (Nucleotide-sugar transporter)	GO:0000139 (Golgi membrane), GO:0005351 (sugar:proton symporter activity), GO:0008643 (carbohydrate transport), GO:0016021 (integral component of membrane)
Niben101Scf20521g00012.1	emb|CDY36440.1|	***-	BnaC03g67600D [Brassica napus]	IPR024738 (Transcriptional coactivator Hfi1/Transcriptional adapter 1)	GO:0070461 (SAGA-type complex)
Niben101Scf01273g02006.1	ref|NP_001046922.1|	***-	product [Oryza sativa Japonica Group]	IPR007454 (Uncharacterised protein family UPF0250), IPR027471 (YbeD-like domain)	
Niben101Scf02837g07018.1	sp|Q9C6Z3|ODPB2_ARATH	--*-	Pyruvate dehydrogenase E1 component subunit beta-2, chloroplastic		
Niben101Ctg13347g00002.1	AT3G48310.1	***-	cytochrome P450, family 71, subfamily A, polypeptide 22 LENGTH=490	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01056g05003.1	AT4G32810.1	*-*-	carotenoid cleavage dioxygenase 8 LENGTH=570	IPR004294 (Carotenoid oxygenase)	
Niben101Scf14311g01009.1	AT2G37000.1	***-	TCP family transcription factor LENGTH=188	IPR005333 (Transcription factor, TCP)	
Niben101Scf06613g01004.1	AT5G62990.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=494	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf03223g04002.1	sp|Q9QYK7|RNF11_MOUSE	*-*-	RING finger protein 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09172g02006.1	sp|Q865C5|UBIQ_CAMDR	-**-	Ubiquitin	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf01486g04012.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf09074g00021.1	emb|CDX75122.1|	*-*-	BnaC09g25600D [Brassica napus]	IPR025476 (Helitron helicase-like domain)	
Niben101Scf11288g02002.1			Unknown protein		
Niben101Scf12694g00013.1	sp|O82491|SPT16_ARATH	***-	FACT complex subunit SPT16	IPR000994 (Peptidase M24, structural domain), IPR013953 (FACT complex subunit Spt16p/Cdc68p), IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	
Niben101Scf04875g02008.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02368g00015.1	sp|P34369|PRP8_CAEEL	*-**	Pre-mRNA-splicing factor 8 homolog	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR027652 (Pre-mRNA-processing-splicing factor 8)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005515 (protein binding), GO:0005681 (spliceosomal complex)
Niben101Scf00271g09015.1	sp|Q3UXZ9|KDM5A_MOUSE	*-*-	Lysine-specific demethylase 5A	IPR003347 (JmjC domain), IPR003349 (JmjN domain), IPR003888 (FY-rich, N-terminal), IPR003889 (FY-rich, C-terminal), IPR004198 (Zinc finger, C5HC2-type)	GO:0005634 (nucleus)
Niben101Scf00891g04008.1	sp|Q8GXJ4|GLR34_ARATH	****	Glutamate receptor 3.4	IPR017103 (Ionotropic glutamate receptor, plant), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf00984g09007.1	sp|Q5PNY6|PUB21_ARATH	***-	U-box domain-containing protein 21	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf04655g02008.1	sp|B1NWE6|PSBC_MANES	****	Photosystem II CP43 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Ctg00601g00002.1	ref|XP_007050633.1|	*-*-	F15k9.21, putative isoform 2 [Theobroma cacao] gb|EOX94790.1| F15k9.21, putative isoform 2 [Theobroma cacao]		
Niben101Scf05487g00014.1	AT1G04160.1	*-**	myosin XI B LENGTH=1500	IPR004009 (Myosin, N-terminal, SH3-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf11778g01026.1	sp|Q8H0W2|HDA9_ARATH	****	Histone deacetylase 9	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	GO:0004407 (histone deacetylase activity), GO:0016575 (histone deacetylation)
Niben101Scf01982g01012.1	sp|Q6GQD3|RB24A_XENLA	*-**	RNA-binding protein 24-A	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf12589g00006.1	AT2G38910.1	****	calcium-dependent protein kinase 20 LENGTH=583	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06154g01004.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf26575g00004.1			Unknown protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00331g02007.1	sp|Q5ZLT0|XPO7_CHICK	*-*-	Exportin-7	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf03392g09004.1	sp|Q7WTR3|MDTK_ERWAM	-**-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03882g06016.1	AT1G48880.1	***-	TRICHOME BIREFRINGENCE-LIKE 7 LENGTH=445	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf02358g01009.1	sp|Q6IRP4|ABHDD_XENLA	--*-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00528g00001.1	sp|Q3SWX0|NIPA2_BOVIN	--**	Magnesium transporter NIPA2	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf00231g01003.1	sp|Q9LFC5|PP360_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf16713g00002.1	AT3G21690.1	*-*-	MATE efflux family protein LENGTH=506	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf08259g02004.1	sp|F6YVB9|E2F7_XENTR	--**	Transcription factor E2F7	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR015633 (E2F Family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005667 (transcription factor complex), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01640g01005.1			Unknown protein		
Niben101Scf01959g05002.1	AT1G80270.1	***-	PENTATRICOPEPTIDE REPEAT 596 LENGTH=596	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02831g00003.1			Unknown protein		
Niben101Scf01543g06030.1	AT3G49160.1	****	pyruvate kinase family protein LENGTH=710	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf05841g01025.1	AT2G03430.1	*-*-	Ankyrin repeat family protein LENGTH=240	IPR008962 (PapD-like), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Ctg14347g00007.1	ref|WP_002796809.1|	--*-	chorismate mutase [Microcystis aerugin [Microcystis aeruginosa PCC 9809]	IPR010404 (Chromophore lyase CpcT/CpeT)	GO:0017009 (protein-phycocyanobilin linkage)
Niben101Scf00338g01010.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02868g02003.1	sp|Q940T9|COL4_ARATH	****	Zinc finger protein CONSTANS-LIKE 4	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf00360g02009.1	sp|Q9FIX2|AIG2L_ARATH	*-*-	AIG2-like protein	IPR013024 (Butirosin biosynthesis, BtrG-like)	
Niben101Scf23606g00002.1	sp|Q8RWF5|MATE9_ARATH	--*-	MATE efflux family protein 9	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02902g04011.1	sp|O04514|OPT2_ARATH	*-*-	Oligopeptide transporter 2	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf00735g06034.1	sp|O65628|CTU2_ARATH	*-*-	Cytoplasmic tRNA 2-thiolation protein 2		
Niben101Scf10423g01020.1	sp|Q94B77|FH5_ARATH	*-*-	Formin-like protein 5	IPR015425 (Formin, FH2 domain)	
Niben101Scf09150g03015.1	sp|Q9C5D2|FBL4_ARATH	***-	F-box/LRR-repeat protein 4	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf02971g01005.1	sp|P46417|GSTX3_SOYBN	***-	Glutathione S-transferase 3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf07687g01003.1	sp|F4IVU1|ARC2B_ARATH	****	Actin-related protein 2/3 complex subunit 2B	IPR007188 (Actin-related protein 2/3 complex subunit 2)	GO:0005885 (Arp2/3 protein complex), GO:0015629 (actin cytoskeleton), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf05566g05006.1	sp|B8CPH7|RSMF_SHEPW	*-**	Ribosomal RNA small subunit methyltransferase F	IPR023267 (RNA (C5-cytosine) methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0008168 (methyltransferase activity), GO:0016428 (tRNA (cytosine-5-)-methyltransferase activity)
Niben101Scf00585g04012.1	AT2G17200.1	***-	ubiquitin family protein LENGTH=551	IPR009060 (UBA-like), IPR015496 (Ubiquilin), IPR019956 (Ubiquitin), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf04422g05003.1	sp|Q9SV60|XTH2_ARATH	*-**	Xyloglucan endotransglucosylase/hydrolase protein 2	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf08472g01002.1	AT4G21380.1	*-**	receptor kinase 3 LENGTH=850	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01694g12004.1	ref|XP_002535202.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF27181.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00508g01009.1	sp|Q9LH74|MSL5_ARATH	***-	Mechanosensitive ion channel protein 5	IPR006685 (Mechanosensitive ion channel MscS)	GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf16206g00013.1	emb|CDX98828.1|	***-	BnaC09g50070D [Brassica napus]		
Niben101Scf25609g00001.1	sp|Q43143|PMEU1_SOLLC	*-**	Pectinesterase/pectinesterase inhibitor U1	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf07913g00005.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01834g01025.1	sp|B5FG80|NORW_VIBFM	*-**	Nitric oxide reductase FlRd-NAD(+) reductase	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03252g01002.1	pdb|3L2O|A	****	Chain A, Structure-Based Mechanism Of Dimerization-Dependent Ubiquitination By The Scffbx4 Ubiquitin Ligase	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf06000g04002.1			Unknown protein		
Niben101Scf02070g00001.1	dbj|BAD83439.2|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Nicotiana tabacum]		
Niben101Scf00414g05015.1	ref|NP_001047254.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf05618g05010.1	sp|P0C5B0|MADS7_ORYSI	*-*-	MADS-box transcription factor 7	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf14118g00012.1	emb|CDY20492.1|	***-	BnaC04g05520D [Brassica napus]		
Niben101Scf03154g01009.1	ref|XP_003615153.1|	*-**	2-dehydro-3-deoxyphosphoheptonate aldolase (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase) [Medicago truncatula] gb|AES98111.1| phospho-2-dehydro-3-deoxyheptonate aldolase [Medicago truncatula]	IPR002480 (DAHP synthetase, class II)	GO:0003849 (3-deoxy-7-phosphoheptulonate synthase activity), GO:0009073 (aromatic amino acid family biosynthetic process)
Niben101Scf03864g01002.1	sp|A7FZ81|RL11_CLOB1	***-	50S ribosomal protein L11	IPR000911 (Ribosomal protein L11/L12)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06955g01001.1	sp|Q9C5H4|Y3627_ARATH	***-	VHS domain-containing protein	IPR008942 (ENTH/VHS), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0006886 (intracellular protein transport)
Niben101Scf01145g03003.1	sp|Q5JTN6|WDR38_HUMAN	*-*-	WD repeat-containing protein 38	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf32862g00001.1	AT1G55915.1	****	zinc ion binding LENGTH=404	IPR001876 (Zinc finger, RanBP2-type), IPR013536 (WLM)	GO:0008270 (zinc ion binding)
Niben101Scf04464g03008.1	sp|B2VPR8|AL11B_OLEEU	*-**	Pectinesterase 2	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01721g09001.1	AT5G10700.1	*-*-	Peptidyl-tRNA hydrolase II (PTH2) family protein LENGTH=200	IPR023476 (Peptidyl-tRNA hydrolase II domain)	
Niben101Scf05155g00012.1	gb|KEH37092.1|	--*-	cytomatrix-like protein [Medicago truncatula]		
Niben101Scf02197g04006.1	sp|Q39134|AAP3_ARATH	***-	Amino acid permease 3	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf06144g00004.1	AT2G39380.1	****	exocyst subunit exo70 family protein H2 LENGTH=637	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf02160g00030.1			Unknown protein		
Niben101Scf00811g00006.1	sp|Q67ZI9|GDL48_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf11424g00012.1	emb|CDX77629.1|	***-	BnaC07g18830D [Brassica napus]	IPR007770 (Protein of unknown function DUF679)	
Niben101Scf03607g02007.1	sp|B6J4J8|ERA_COXB1	***-	GTPase Era	IPR005225 (Small GTP-binding protein domain), IPR005662 (GTP-binding protein Era), IPR015946 (K homology domain-like, alpha/beta), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003723 (RNA binding), GO:0005525 (GTP binding), GO:0005622 (intracellular)
Niben101Scf00559g03009.1	AT1G02816.1	***-	Protein of unknown function, DUF538 LENGTH=166	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf03482g02012.1			Unknown protein		
Niben101Scf06596g03017.1	sp|A8EYB0|SECA_RICCK	--*-	Protein translocase subunit SecA		
Niben101Scf05143g00011.1	sp|Q8GX77|FB316_ARATH	***-	F-box protein		
Niben101Scf00435g02011.1	sp|Q9H6D7|HAUS4_HUMAN	--**	HAUS augmin-like complex subunit 4	IPR029327 (HAUS augmin-like complex subunit 4)	GO:0051225 (spindle assembly), GO:0070652 (HAUS complex)
Niben101Scf00536g12004.1	AT1G19640.1	****	jasmonic acid carboxyl methyltransferase LENGTH=389	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02639g04016.1	sp|Q922U1|PRPF3_MOUSE	*-*-	U4/U6 small nuclear ribonucleoprotein Prp3	IPR010541 (Domain of unknown function DUF1115), IPR013881 (Pre-mRNA-splicing factor 3), IPR027104 (U4/U6 small nuclear ribonucleoprotein Prp3)	GO:0000398 (mRNA splicing, via spliceosome), GO:0046540 (U4/U6 x U5 tri-snRNP complex)
Niben101Scf07203g00006.1	AT2G41750.1	***-	DTW domain-containing protein LENGTH=253	IPR005636 (DTW)	
Niben101Scf04445g04012.1	AT3G55580.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=488	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf02929g04028.1			Unknown protein		
Niben101Scf01740g01003.1	AT1G64720.1	****	Polyketide cyclase/dehydrase and lipid transport superfamily protein LENGTH=385	IPR002913 (START domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf00592g11014.1	AT5G48040.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=422	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf02654g00001.1	AT1G55790.1	*-*-	Domain of unknown function (DUF2431) LENGTH=515	IPR019446 (Domain of unknown function DUF2431), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf03066g00021.1	sp|Q9HC62|SENP2_HUMAN	*-*-	Sentrin-specific protease 2	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf02909g03006.1	sp|Q9FJK3|AGL80_ARATH	*-*-	Agamous-like MADS-box protein AGL80	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00381g06004.1	AT5G65980.1	***-	Auxin efflux carrier family protein LENGTH=395	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02137g00004.1	sp|Q9SXD8|PPR90_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02572g02004.1	sp|A3CNR9|RNZ_STRSV	*-*-	Ribonuclease Z	IPR001279 (Beta-lactamase-like), IPR027794 (tRNase Z endonuclease)	GO:0008033 (tRNA processing)
Niben101Scf00207g05028.1	AT4G38040.1	***-	Exostosin family protein LENGTH=425	IPR004263 (Exostosin-like)	
Niben101Scf01679g03017.1	sp|Q9LJ44|COL12_ARATH	****	Zinc finger protein CONSTANS-LIKE 12	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf03114g04012.1	sp|Q7M1E7|PGLR2_CHAOB	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02929g06085.1	sp|Q5FGW5|NUOH_EHRRG	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf00686g00003.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf03340g02001.1	sp|Q94K01|DBR1_ARATH	***-	Lariat debranching enzyme	IPR007708 (Lariat debranching enzyme, C-terminal), IPR029052 (Metallo-dependent phosphatase-like)	GO:0006397 (mRNA processing), GO:0016787 (hydrolase activity), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf03522g00006.1	ref|WP_019421422.1|	****	glycosyl transferase family 2 [Paenibacillus sp. OSY-SE]	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf01463g07027.1	AT5G62570.2	***-	Calmodulin binding protein-like LENGTH=494	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf10713g00006.1	gb|ACF19789.1|	*-*-	NAC transcription factor [Nicotiana tabacum]	IPR003441 (NAC domain)	
Niben101Scf03131g00002.1	sp|Q5ZKU5|RAB14_CHICK	***-	Ras-related protein Rab-14	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00973g00002.1	gb|ACG39425.1|	****	ubiquitin-protein ligase/ zinc ion binding protein [Zea mays]	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00157g00020.1	AT1G50740.1	***-	Transmembrane proteins 14C LENGTH=119	IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane)
Niben101Scf05044g04024.1	ref|XP_007031332.1|	--*-	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao] gb|EOY02258.1| Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf01427g01013.1	sp|O18413|PRS8_DROME	*-*-	26S protease regulatory subunit 8	IPR003959 (ATPase, AAA-type, core), IPR005938 (AAA ATPase, CDC48 family), IPR009010 (Aspartate decarboxylase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029067 (CDC48 domain 2-like)	GO:0005524 (ATP binding), GO:0016787 (hydrolase activity)
Niben101Scf02829g09015.1	ref|NP_001030737.1|	-**-	low-molecular-weight cysteine-rich 55 [Arabidopsis thaliana] RecName: Full=Putative defensin-like protein 121; AltName: Full=Putative low-molecular-weight cysteine-rich protein 55; Short=Protein LCR55; Flags: Precursor [Arabidopsis thaliana] gb|AEE76452.1| low-molecular-weight cysteine-rich 55 [Arabidopsis thaliana]		
Niben101Scf06499g00016.1	AT3G21190.1	***-	O-fucosyltransferase family protein LENGTH=422	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf01818g00016.1	sp|Q9FFP8|DEF06_ARATH	***-	Defensin-like protein 6	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf07691g00014.1	sp|Q9ZWC5|SCL18_ARATH	***-	Scarecrow-like protein 18	IPR005202 (Transcription factor GRAS)	
Niben101Scf22360g00002.1	sp|Q9SU40|SKU5_ARATH	*-*-	Monocopper oxidase-like protein SKU5		
Niben101Scf05552g00008.1	sp|B8CKG8|GLMM_SHEPW	*-*-	Phosphoglucosamine mutase	IPR005841 (Alpha-D-phosphohexomutase superfamily)	GO:0000287 (magnesium ion binding), GO:0005975 (carbohydrate metabolic process), GO:0016868 (intramolecular transferase activity, phosphotransferases)
Niben101Scf12725g00031.1	emb|CDX68466.1|	***-	BnaC01g25440D [Brassica napus]		
Niben101Scf02534g00012.1	AT1G79190.1	***-	ARM repeat superfamily protein LENGTH=1335	IPR011989 (Armadillo-like helical)	
Niben101Scf01267g04012.1	ref|XP_002301088.1|	--*-	pleckstrin homology domain-containing family protein [Populus trichocarpa] gb|EEE80361.1| pleckstrin homology domain-containing family protein [Populus trichocarpa]		
Niben101Scf11770g01010.1	ref|XP_002535202.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF27181.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04187g01013.1	sp|Q3EDF8|PPR28_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01683g08004.1	AT2G22140.1	*-*-	essential meiotic endonuclease 1B LENGTH=551		
Niben101Scf01086g00009.1	dbj|BAC06251.1|	*-*-	[Oryza sativa Japonica Group]		
Niben101Scf01964g07005.1	sp|P22274|ARF_CANAL	*-*-	ADP-ribosylation factor	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf08633g01003.1	sp|O59299|RS9_PYRHO	***-	30S ribosomal protein S9	IPR000754 (Ribosomal protein S9), IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02827g03005.1	sp|Q9FFP8|DEF06_ARATH	***-	Defensin-like protein 6	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf03966g00016.1	sp|Q53MB8|TLPH_ORYSJ	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf04436g14001.1	gb|ACG37046.1|	*-*-	glycine-rich protein [Zea mays]		
Niben101Scf05360g01016.1	sp|Q63ZI0|KCNK9_XENLA	--**	Potassium channel subfamily K member 9	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03143g11006.1	sp|Q9LIN2|GDL53_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf16660g01003.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01563g03004.1	gb|EMT07942.1|	***-	Protein-tyrosine phosphatase mitochondrial 1-like protein [Aegilops tauschii]	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	
Niben101Scf04171g02004.1	sp|P83332|TLP1_PRUPE	***-	Thaumatin-like protein 1	IPR001938 (Thaumatin)	
Niben101Scf04223g00002.1	sp|Q96VB6|XYNF3_ASPOR	*-*-	Endo-1,4-beta-xylanase F3	IPR001000 (Glycoside hydrolase, family 10), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06058g00017.1	gb|AES91542.2|	***-	epidermal patterning factor-like protein [Medicago truncatula]		
Niben101Scf11865g01002.1	sp|A8GH86|FADJ_SERP5	*-*-	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03262g01002.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02816g14006.1			Unknown protein		
Niben101Scf00555g00010.1			Unknown protein		
Niben101Scf12084g01003.1	emb|CDY43565.1|	***-	BnaC02g16620D [Brassica napus]		
Niben101Scf00744g02011.1	ref|XP_007018249.1|	--*-	Tetratricopeptide repeat-like superfamily protein [Theobroma cacao] gb|EOY15474.1| Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]		
Niben101Scf10865g00009.1	sp|Q8S8V2|YCF2A_ATRBE	*-*-	Protein Ycf2 A		
Niben101Scf33820g00005.1	sp|Q9SMC4|DAD1_SOLLC	****	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1	IPR003038 (DAD/Ost2)	GO:0004579 (dolichyl-diphosphooligosaccharide-protein glycotransferase activity), GO:0008250 (oligosaccharyltransferase complex), GO:0016021 (integral component of membrane)
Niben101Scf00080g04001.1	gb|AGT95990.1|	*-*-	seed dormancy protein [Triticum aestivum]		
Niben101Scf00013g03001.1	sp|B9L3S8|FTSH2_THERP	*-**	ATP-dependent zinc metalloprotease FtsH 2	IPR000642 (Peptidase M41), IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis)
Niben101Scf05468g08008.1			Unknown protein		
Niben101Scf02174g01022.1	AT5G06940.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=872	IPR001611 (Leucine-rich repeat), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf37776g00001.1			Unknown protein		
Niben101Scf01023g08016.1	sp|Q75VR1|TPC1A_TOBAC	****	Two pore calcium channel protein 1A	IPR005821 (Ion transport domain), IPR011992 (EF-hand domain pair), IPR027359 (Voltage-dependent channel, four helix bundle domain), IPR028801 (Two pore calcium channel protein 1)	GO:0005216 (ion channel activity), GO:0005245 (voltage-gated calcium channel activity), GO:0005509 (calcium ion binding), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03768g01005.1	sp|Q9FSG7|TP1A_MALDO	***-	Thaumatin-like protein 1a	IPR001938 (Thaumatin)	
Niben101Scf02502g15014.1	sp|O65743|RL24_CICAR	***-	60S ribosomal protein L24	IPR000988 (Ribosomal protein L24e-related), IPR023441 (Ribosomal protein L24e domain), IPR023442 (Ribosomal protein L24e, conserved site)	
Niben101Scf15067g04021.1	sp|P74388|BQMT_SYNY3	--**	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf05664g01007.1	sp|Q01740|FMO1_HUMAN	*-**	Dimethylaniline monooxygenase [N-oxide-forming] 1	IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02354g04002.1	sp|Q9DBG3|AP2B1_MOUSE	*-**	AP-2 complex subunit beta	IPR002553 (Clathrin/coatomer adaptor, adaptin-like, N-terminal), IPR009028 (Coatomer/calthrin adaptor appendage, C-terminal subdomain), IPR012295 (Beta2-adaptin/TBP, C-terminal domain), IPR015151 (Beta-adaptin appendage, C-terminal subdomain), IPR016024 (Armadillo-type fold), IPR026739 (AP complex subunit beta)	GO:0005488 (binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030131 (clathrin adaptor complex)
Niben101Scf02085g25006.1	AT3G08840.2	*-**	D-alanine--D-alanine ligase family LENGTH=937	IPR005905 (D-alanine--D-alanine ligase), IPR016185 (Pre-ATP-grasp domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008716 (D-alanine-D-alanine ligase activity)
Niben101Scf04628g00001.1	sp|Q9SI37|WRKY1_ARATH	--**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03947g01010.1	AT2G37180.1	*-*-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00143g03009.1	sp|Q9FVW4|RENT3_ARATH	***-	Regulator of nonsense transcripts UPF3	IPR005120 (Regulator of nonsense-mediated decay, UPF3)	GO:0000166 (nucleotide binding)
Niben101Scf04053g03004.1	sp|Q4WKB9|CWC22_ASPFU	*-*-	Pre-mRNA-splicing factor cwc22	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf00279g02022.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10015g01007.1	AT2G39570.1	***-	ACT domain-containing protein LENGTH=411	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf09570g00018.1	sp|Q9SF32|IQD1_ARATH	***-	Protein IQ-DOMAIN 1	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf01566g01002.1	sp|B1AQJ2|UBP36_MOUSE	*-**	Ubiquitin carboxyl-terminal hydrolase 36	IPR002893 (Zinc finger, MYND-type), IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf02411g01001.1	sp|A7NY33|PER4_VITVI	****	Peroxidase 4	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10314g04038.1	sp|Q3MB78|PSBA3_ANAVT	*-**	Photosystem Q(B) protein 3	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf07778g03025.1	sp|O24160|TGA21_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain), IPR029803 (Protein ABSCISIC ACID-INSENSITIVE 5)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009737 (response to abscisic acid), GO:0043565 (sequence-specific DNA binding), GO:0045893 (positive regulation of transcription, DNA-templated)
Niben101Scf13218g00011.1	emb|CDY51861.1|	***-	BnaC03g77130D [Brassica napus]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf02792g01031.1	AT2G01290.1	****	ribose-5-phosphate isomerase 2 LENGTH=265	IPR004788 (Ribose 5-phosphate isomerase, type A)	GO:0004751 (ribose-5-phosphate isomerase activity), GO:0009052 (pentose-phosphate shunt, non-oxidative branch)
Niben101Scf04609g00009.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf04234g02017.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf10412g00006.1	sp|Q94A43|BEH2_ARATH	***-	BES1/BZR1 homolog protein 2	IPR008540 (BZR1, transcriptional repressor)	
Niben101Scf02375g03004.1	AT1G10040.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=412	IPR007751 (Domain of unknown function DUF676, lipase-like), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf10224g01018.1	AT5G12400.1	*-**	DNA binding;zinc ion binding;DNA binding LENGTH=1602	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR018501 (DDT domain superfamily), IPR028942 (WHIM1 domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06183g05001.1	sp|P42739|UBIQP_ACEPE	--*-	Polyubiquitin	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf01250g01002.1	sp|Q74N79|RL5_NANEQ	***-	50S ribosomal protein L5	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00700g08006.1	sp|Q00763|COMT1_POPTM	****	Caffeic acid 3-O-methyltransferase 1	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf04414g00004.1	AT5G60580.2	***-	RING/U-box superfamily protein LENGTH=494	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf05912g01003.1	sp|A5ILH0|RUVB_THEP1	*-**	Holliday junction ATP-dependent DNA helicase RuvB	IPR003959 (ATPase, AAA-type, core), IPR008921 (DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal), IPR009060 (UBA-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006260 (DNA replication)
Niben101Scf00941g02004.1	AT1G34220.1	***-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=649	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf01166g09016.1	sp|Q9UK97|FBX9_HUMAN	*-*-	F-box only protein 9	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf04011g05006.1	sp|Q9C519|WRKY6_ARATH	****	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02929g05034.1	ref|NP_063977.1|	***-	orf146 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] ref|YP_004222306.1| hypothetical protein BevumaM_p071 [Beta vulgaris subsp. maritima] dbj|BAA99289.1| orf146 [Beta vulgaris subsp. vulgaris] emb|CBJ14042.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBJ17533.1| hypothetical protein [Beta vulgaris subsp. maritima] emb|CBL54124.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp. maritima]		
Niben101Scf02949g04005.1	sp|Q9SAF0|ORP1D_ARATH	***-	Oxysterol-binding protein-related protein 1D	IPR000648 (Oxysterol-binding protein), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf01005g11010.1	ref|XP_003615152.1|	****	2-dehydro-3-deoxyphosphoheptonate aldolase (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase) [Medicago truncatula] gb|AES98110.1| phospho-2-dehydro-3-deoxyheptonate aldolase [Medicago truncatula]	IPR002480 (DAHP synthetase, class II)	GO:0003849 (3-deoxy-7-phosphoheptulonate synthase activity), GO:0009073 (aromatic amino acid family biosynthetic process)
Niben101Ctg10643g00004.1	AT2G15220.1	***-	Plant basic secretory protein (BSP) family protein LENGTH=225	IPR007541 (Uncharacterised protein family, basic secretory protein)	
Niben101Scf01506g03015.1	AT5G60900.1	*-**	receptor-like protein kinase 1 LENGTH=748	IPR000858 (S-locus glycoprotein), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf01463g02009.1	AT3G13062.2	****	Polyketide cyclase/dehydrase and lipid transport superfamily protein LENGTH=440	IPR002913 (START domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf08182g02015.1	ref|XP_007020357.1|	*-*-	Glycine-rich protein / ole / oleosin, putative [Theobroma cacao]	IPR000136 (Oleosin)	GO:0012511 (monolayer-surrounded lipid storage body), GO:0016021 (integral component of membrane)
Niben101Scf10342g01018.1	AT5G28040.1	*-*-	DNA-binding storekeeper protein-related transcriptional regulator LENGTH=427	IPR007592 (Protein of unknown function DUF573)	
Niben101Scf03854g03015.1			Unknown protein		
Niben101Scf03565g05002.1	emb|CDY45481.1|	*-*-	BnaCnng12400D [Brassica napus]		
Niben101Scf09513g00033.1	sp|O82804|ELF3_ARATH	***-	Protein EARLY FLOWERING 3		
Niben101Scf01396g07008.1	sp|Q9VUN3|RANL_DROME	****	GTP-binding nuclear protein Ran-like	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf04505g02022.1	sp|Q9LW84|PP236_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Ctg14629g00001.1	sp|Q9XEX2|PRX2B_ARATH	***-	Peroxiredoxin-2B	IPR012336 (Thioredoxin-like fold)	GO:0016491 (oxidoreductase activity)
Niben101Scf02897g02016.1	sp|Q46TF2|GLGB_CUPPJ	*-**	1,4-alpha-glucan branching enzyme GlgB	IPR013780 (Glycosyl hydrolase, family 13, all-beta), IPR015902 (Glycoside hydrolase, family 13)	GO:0003824 (catalytic activity), GO:0003844 (1,4-alpha-glucan branching enzyme activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0005978 (glycogen biosynthetic process), GO:0043169 (cation binding)
Niben101Scf05032g02013.1	AT1G09660.1	****	RNA-binding KH domain-containing protein LENGTH=298	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf04117g09008.1	ref|XP_010099569.1|	--*-	TMV resistance protein N [Morus notabilis] gb|EXB79635.1| TMV resistance protein N [Morus notabilis]		
Niben101Scf08863g01031.1	AT3G21560.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf11334g01001.1	ref|XP_007022459.1|	*-*-	RNase H family protein [Theobroma cacao] gb|EOY13984.1| RNase H family protein [Theobroma cacao]	IPR026960 (Reverse transcriptase zinc-binding domain)	
Niben101Scf00383g04013.1			Unknown protein	IPR000167 (Dehydrin)	GO:0006950 (response to stress), GO:0009415 (response to water)
Niben101Scf02665g13003.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01681g05005.1	sp|Q9LT67|BH113_ARATH	*-*-	Transcription factor bHLH113	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02812g02012.1	sp|Q08DI6|RNF11_BOVIN	*-*-	RING finger protein 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04329g03003.1	sp|Q50940|CAH_NEIGO	***-	Carbonic anhydrase	IPR001148 (Alpha carbonic anhydrase), IPR023561 (Carbonic anhydrase, alpha-class)	GO:0004089 (carbonate dehydratase activity), GO:0006730 (one-carbon metabolic process), GO:0008270 (zinc ion binding)
Niben101Scf00691g02021.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf12017g03006.1	ref|WP_017312960.1|	***-	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 [Fischerella sp. PCC 9339]	IPR008979 (Galactose-binding domain-like), IPR013857 (NADH:ubiquinone oxidoreductase intermediate-associated protein 30), IPR016040 (NAD(P)-binding domain)	
Niben101Scf07275g00001.1	sp|Q9LQQ4|H2B1_ARATH	***-	Histone H2B.1	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf14695g00014.1			Unknown protein		
Niben101Scf01042g02014.1	AT1G30320.1	***-	Remorin family protein LENGTH=509	IPR005516 (Remorin, C-terminal)	
Niben101Scf09205g00007.1	sp|Q8VYB1|MED31_ARATH	*-**	Mediator of RNA polymerase II transcription subunit 31	IPR008831 (Mediator complex, subunit Med31)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0016592 (mediator complex)
Niben101Scf00381g07025.1	sp|Q84W41|GLR36_ARATH	*-*-	Glutamate receptor 3.6	IPR028082 (Periplasmic binding protein-like I)	
Niben101Scf09686g00011.1	sp|Q5HQW4|TRXB_STAEQ	****	Thioredoxin reductase	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01738g06007.1	sp|O80434|LAC4_ARATH	***-	Laccase-4	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf27305g00003.1	emb|CDY33462.1|	***-	BnaA06g36110D [Brassica napus]	IPR006852 (Protein of unknown function DUF616)	
Niben101Scf10434g00020.1	AT1G58290.1	****	Glutamyl-tRNA reductase family protein LENGTH=543	IPR000343 (Tetrapyrrole biosynthesis, glutamyl-tRNA reductase), IPR016040 (NAD(P)-binding domain)	GO:0008883 (glutamyl-tRNA reductase activity), GO:0033014 (tetrapyrrole biosynthetic process), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01695g06007.1	ref|XP_002304265.1|	--*-	rib L12 [Populus trichocarpa]		
Niben101Scf02188g02020.1	sp|Q2Z2E9|SCR_IPONI	*-*-	Protein SCARECROW	IPR005202 (Transcription factor GRAS)	
Niben101Scf24238g00010.1	sp|Q8GXX7|C3H33_ARATH	***-	Zinc finger CCCH domain-containing protein 33	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf06865g00004.1	sp|Q40476|ERF1_TOBAC	****	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08318g00002.1	sp|O35445|RNF5_MOUSE	--*-	E3 ubiquitin-protein ligase RNF5	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03570g02007.1	sp|Q54V77|PYRG_DICDI	--*-	CTP synthase	IPR029062 (Class I glutamine amidotransferase-like)	
Niben101Scf04011g06002.1	sp|O16102|CHD3_DROME	*-**	Chromodomain-helicase-DNA-binding protein 3	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf01943g02003.1	sp|Q5U5Q3|MEX3C_HUMAN	--**	RNA-binding E3 ubiquitin-protein ligase MEX3C	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Ctg13332g00003.1	sp|A2BSM6|MIAB_PROMS	*-*-	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	IPR013848 (Methylthiotransferase, N-terminal), IPR023970 (Methylthiotransferase/radical SAM-type protein)	GO:0003824 (catalytic activity), GO:0009451 (RNA modification), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf01063g06008.1	ref|XP_003605681.1|	*-*-	Ripening-related protein [Medicago truncatula]	IPR007763 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0009055 (electron carrier activity), GO:0016020 (membrane)
Niben101Scf00974g00015.1	sp|A5FZ53|ATPG_ACICJ	****	ATP synthase gamma chain	IPR000131 (ATPase, F1 complex, gamma subunit), IPR023633 (ATPase, F1 complex, gamma subunit domain)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf03848g01003.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf00621g11010.1			Unknown protein		
Niben101Scf03389g00023.1	AT1G50820.1	*-*-	Aminotransferase-like, plant mobile domain family protein LENGTH=528	IPR006904 (Protein of unknown function DUF716 (TMEM45)), IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf06081g01012.1	sp|B9LTD6|RL1_HALLT	****	50S ribosomal protein L1	IPR023673 (Ribosomal protein L1, conserved site), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf05307g01006.1	ref|XP_003604751.1|	*-*-	Receptor-like protein kinase [Medicago truncatula] gb|AES86948.1| verticillium wilt resistance-like protein [Medicago truncatula]	IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	
Niben101Ctg13380g00001.1	sp|P52015|CYP7_CAEEL	****	Peptidyl-prolyl cis-trans isomerase 7	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf05767g05006.1	sp|Q9SYS3|CRK40_ARATH	*-**	Cysteine-rich receptor-like protein kinase 40	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01482g01002.1	sp|A2X208|OEP80_ORYSI	****	Outer envelope protein 80, chloroplastic	IPR000184 (Bacterial surface antigen (D15)), IPR005689 (Chloroplast envelope protein translocase, IAP75), IPR010827 (Surface antigen variable number)	GO:0006886 (intracellular protein transport), GO:0015450 (P-P-bond-hydrolysis-driven protein transmembrane transporter activity), GO:0019867 (outer membrane)
Niben101Scf08533g00009.1	gb|ABA98861.1|	*-*-	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]		
Niben101Scf02511g02003.1			Unknown protein		
Niben101Scf08351g04011.1	sp|Q5XEP9|KCS17_ARATH	*-*-	3-ketoacyl-CoA synthase 17	IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf06757g01006.1	AT1G65920.1	*-*-	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain LENGTH=1006	IPR013591 (Brevis radix (BRX) domain)	
Niben101Scf00861g00010.1	sp|O70133|DHX9_MOUSE	*-**	ATP-dependent RNA helicase A	IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR014720 (Double-stranded RNA-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004386 (helicase activity)
Niben101Scf05402g02003.1	sp|Q96HR8|NAF1_HUMAN	*-*-	H/ACA ribonucleoprotein complex non-core subunit NAF1	IPR007504 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1), IPR009000 (Translation protein, beta-barrel domain)	GO:0001522 (pseudouridine synthesis), GO:0042254 (ribosome biogenesis)
Niben101Scf05923g03010.1	sp|O82204|RL281_ARATH	*-*-	60S ribosomal protein L28-1	IPR002672 (Ribosomal protein L28e), IPR029004 (Ribosomal L28e/Mak16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00631g01006.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01591g00001.1	sp|Q7F2L3|NAC48_ORYSJ	*-*-	NAC domain-containing protein 48	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01412g00018.1	sp|Q9CMS2|DNAJ_PASMU	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf00360g04002.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0006950 (response to stress), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03004g00013.1	ref|XP_002518329.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF44089.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03823g02029.1	AT1G72330.3	***-	alanine aminotransferase 2 LENGTH=553	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf12582g02013.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02181g00017.1	gb|AGY62799.1|	--*-	orf148 (mitochondrion) [Eruca vesicaria subsp. sativa] gb|AHY20342.1| hypothetical protein (mitochondrion) (mitochondrion) [Brassica juncea var. tumida] gb|AIC83308.1| orf148 (mitochondrion) [Brassica oleracea var. botrytis]		
Niben101Scf13622g00002.1	sp|P46639|KNAT1_ARATH	***-	Homeobox protein knotted-1-like 1	IPR005539 (ELK), IPR005540 (KNOX1), IPR005541 (KNOX2), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01375g09020.1	sp|Q9SY02|PP301_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf14883g01002.1	ref|XP_002517792.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF44599.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00797g11001.1	gb|AEH25587.1|	--*-	transposase [Solanum demissum]		
Niben101Scf03898g00001.1	sp|Q84UU9|TPS06_ARATH	****	Terpenoid synthase 6	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf01635g05014.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf14297g00001.1	sp|P0A9L7|PPIC_ECO57	*-**	Peptidyl-prolyl cis-trans isomerase C	IPR000297 (Peptidyl-prolyl cis-trans isomerase, PpiC-type), IPR023058 (Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site)	GO:0016853 (isomerase activity)
Niben101Scf04754g02017.1	ref|WP_004889665.1|	--*-	molybdenum cofactor synthesis domain protein [Anoxybacillus flavithermus] gb|ELK22338.1| molybdenum cofactor synthesis domain protein [Anoxybacillus flavithermus TNO-09.006]	IPR001166 (Crustacean neurohormone)	GO:0005184 (neuropeptide hormone activity), GO:0005576 (extracellular region)
Niben101Scf00783g04014.1	sp|P81395|MYB30_ANTMA	*-*-	Myb-related protein 330	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01220g03014.1	sp|Q8LB81|GDL79_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf03018g19007.1	sp|Q9LKJ1|HIBC1_ARATH	*-*-	3-hydroxyisobutyryl-CoA hydrolase 1		
Niben101Scf04819g03021.1	sp|Q9LZP9|CP122_ARATH	***-	Calvin cycle protein CP12-2, chloroplastic	IPR003823 (Domain of unknown function CP12)	
Niben101Scf10524g04002.1	AT5G48485.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=102	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02470g01008.1	sp|Q9T0D6|PP306_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05346g06001.1	sp|Q9C7G0|MA658_ARATH	****	65-kDa microtubule-associated protein 8	IPR007145 (Microtubule-associated protein, MAP65/Ase1/PRC1)	GO:0000226 (microtubule cytoskeleton organization), GO:0000910 (cytokinesis), GO:0008017 (microtubule binding)
Niben101Scf02764g01008.1	sp|P09443|LE19_GOSHI	***-	Late embryogenesis abundant protein D-19	IPR000389 (Stress induced protein)	
Niben101Scf01717g05001.1	sp|Q1DQ20|IF4A_COCIM	*-**	ATP-dependent RNA helicase eIF4A	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf11790g01009.1	sp|Q66HG1|DMTF1_RAT	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06671g03027.1	sp|P23935|NDUA5_BOVIN	*-*-	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	IPR006806 (ETC complex I subunit)	GO:0005743 (mitochondrial inner membrane), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0022904 (respiratory electron transport chain)
Niben101Scf03267g00034.1	gb|AIE42546.1|	*-*-	cytochrome c biogenesis protein ccmFC (mitochondrion) [Raphanus sativus]		
Niben101Scf04444g09017.1	sp|Q9H330|TM245_HUMAN	*-*-	Transmembrane protein 245	IPR002549 (Uncharacterised protein family UPF0118)	
Niben101Scf15227g00003.1	sp|Q8VYG3|GUN16_ARATH	*-*-	Endoglucanase 16	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05310g01002.1	AT2G01070.1	***-	Lung seven transmembrane receptor family protein LENGTH=496	IPR009637 (Transmembrane receptor, eukaryota)	GO:0016021 (integral component of membrane)
Niben101Scf03947g01011.1	AT2G37180.1	*-*-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05952g00008.1	sp|F4IME2|MSL8_ARATH	***-	Mechanosensitive ion channel protein 8	IPR006685 (Mechanosensitive ion channel MscS)	GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf09459g02011.1	sp|Q9NZU7|CABP1_HUMAN	--**	Calcium-binding protein 1	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Ctg02289g00001.1	ref|XP_003588352.1|	*-*-	NADH dehydrogenase subunit [Medicago truncatula]		
Niben101Ctg00219g00002.1	sp|P77966|GYRB_SYNY3	*-**	DNA gyrase subunit B	IPR000565 (DNA topoisomerase, type IIA, subunit B)	GO:0003677 (DNA binding), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0006265 (DNA topological change)
Niben101Scf09523g01007.1	sp|P84227|H32_BOVIN	***-	Histone H3.2	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf17651g00001.1	gb|AGZ19439.1|	***-	APOLLO [Boechera sp. IPK 1]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity)
Niben101Scf00503g10006.1	sp|Q9M153|GDL61_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02920g00017.1	ref|XP_002525615.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF36733.1| conserved hypothetical protein [Ricinus communis]	IPR018392 (LysM domain)	
Niben101Scf02151g01004.1	sp|O65874|MTF1_PEA	*-*-	MADS-box transcription factor 1	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf05201g01009.1			Unknown protein		
Niben101Scf02440g01029.1	sp|O81832|Y4729_ARATH	--*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR000858 (S-locus glycoprotein)	GO:0048544 (recognition of pollen)
Niben101Scf00635g00002.1	AT2G03390.1	***-	uvrB/uvrC motif-containing protein LENGTH=330	IPR001943 (UVR domain), IPR011722 (Hemimethylated DNA-binding domain)	GO:0003677 (DNA binding), GO:0005515 (protein binding)
Niben101Scf09253g00005.1	AT1G23710.1	***-	Protein of unknown function (DUF1645) LENGTH=295	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf16015g04004.1	AT4G31500.1	*-*-	cytochrome P450, family 83, subfamily B, polypeptide 1 LENGTH=499	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03203g09006.1	sp|Q5RF77|CHFR_PONAB	--*-	E3 ubiquitin-protein ligase CHFR		
Niben101Scf03940g04003.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf03550g00018.1	sp|Q9ZWJ9|ARR2_ARATH	--*-	Two-component response regulator ARR2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf04198g05004.1	sp|Q9S7L9|CX6B1_ARATH	****	Cytochrome c oxidase subunit 6b-1	IPR003213 (Cytochrome c oxidase, subunit VIb)	GO:0004129 (cytochrome-c oxidase activity), GO:0005739 (mitochondrion)
Niben101Scf09596g00002.1	AT2G37460.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=380	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf03481g01018.1	ref|NP_683542.1|	*-*-	pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] gb|AEE74836.1| pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]		
Niben101Scf03794g01004.1	sp|A7WM73|HEXO1_ARATH	****	Beta-hexosaminidase 1	IPR017853 (Glycoside hydrolase superfamily), IPR025705 (Beta-hexosaminidase), IPR029018 (Chitobiase/beta-hexosaminidase domain 2-like)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004563 (beta-N-acetylhexosaminidase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09445g02005.1	AT5G25820.1	***-	Exostosin family protein LENGTH=654	IPR004263 (Exostosin-like)	
Niben101Scf00530g09002.1	AT5G53140.1	****	Protein phosphatase 2C family protein LENGTH=420	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf05363g04002.1	sp|Q0VSJ0|RS14_ALCBS	***-	30S ribosomal protein S14	IPR001209 (Ribosomal protein S14)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04738g04004.1	sp|Q9FPT1|UBP12_ARATH	****	Ubiquitin carboxyl-terminal hydrolase 12	IPR018126 (Small acid-soluble spore protein, alpha/beta-type, conserved site), IPR024729 (ICP0-binding domain of Ubiquitin-specific protease 7), IPR028889 (Ubiquitin specific protease domain), IPR029346 (Ubiquitin carboxyl-terminal hydrolase, C-terminal)	GO:0003690 (double-stranded DNA binding), GO:0006265 (DNA topological change), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf21589g00010.1	AT5G63000.1	***-	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein LENGTH=201		
Niben101Scf03570g02009.1			Unknown protein		
Niben101Scf08565g00005.1	sp|P05499|ATP6_TOBAC	****	ATP synthase subunit a	IPR000568 (ATPase, F0 complex, subunit A)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf08285g00022.1	AT5G03490.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=465	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05307g03016.1	ref|XP_007026664.1|	*-*-	SAC domain-containing protein 8 isoform 2 [Theobroma cacao] gb|EOY07166.1| SAC domain-containing protein 8 isoform 2 [Theobroma cacao]		
Niben101Scf02271g04005.1	emb|CDY01666.1|	*-*-	BnaC04g30860D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf06698g00008.1	sp|B9DSA4|PFKA_STRU0	*-**	ATP-dependent 6-phosphofructokinase	IPR000023 (Phosphofructokinase domain), IPR012004 (Pyrophosphate-dependent phosphofructokinase TP0108), IPR022953 (Phosphofructokinase)	GO:0003872 (6-phosphofructokinase activity), GO:0005524 (ATP binding), GO:0006002 (fructose 6-phosphate metabolic process), GO:0006096 (glycolytic process)
Niben101Scf08843g00017.1	sp|F4K4L7|TAF4B_ARATH	****	Transcription initiation factor TFIID subunit 4b	IPR007900 (Transcription initiation factor TFIID component TAF4), IPR009072 (Histone-fold), IPR022003 (RST domain of plant C-terminal)	GO:0005669 (transcription factor TFIID complex), GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity)
Niben101Scf06043g01001.1	sp|Q750S2|SCC2_ASHGO	*-*-	Sister chromatid cohesion protein 2	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold), IPR024986 (Sister chromatid cohesion C-terminal domain), IPR026003 (HEAT repeat associated with sister chromatid cohesion protein)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf12330g02003.1	sp|C4K7A3|RL6_HAMD5	-**-	50S ribosomal protein L6		
Niben101Scf06793g03005.1	AT5G21430.1	***-	Chaperone DnaJ-domain superfamily protein LENGTH=218	IPR001623 (DnaJ domain)	
Niben101Scf04886g05008.1	ref|XP_002533586.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF28791.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07797g03010.1	sp|Q08853|ATC_PLAFK	*-*-	Calcium-transporting ATPase	IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR008250 (P-type ATPase, A  domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0046872 (metal ion binding)
Niben101Scf04171g02007.1	sp|A7GT07|DNAJ_BACCN	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Ctg15044g00003.1	sp|Q9FY75|POT7_ARATH	*-**	Potassium transporter 7	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf02792g01034.1	gb|EAO72220.1|	--*-	conserved hypothetical protein [Streptococcus agalactiae 515]		
Niben101Scf06080g03009.1	AT5G48060.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=1036	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf00262g05006.1	AT2G30490.1	***-	cinnamate-4-hydroxylase LENGTH=505	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00439g04015.1	sp|Q5RDV8|METL6_PONAB	*-*-	Methyltransferase-like protein 6	IPR019410 (Nicotinamide N-methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf16795g00015.1	AT5G51545.1	*-*-	low psii accumulation2 LENGTH=185		
Niben101Scf01188g00029.1			Unknown protein		
Niben101Scf00571g06017.1	AT5G44740.2	****	Y-family DNA polymerase H LENGTH=672	IPR017061 (DNA polymerase eta)	GO:0003684 (damaged DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006281 (DNA repair)
Niben101Scf14482g00006.1	emb|CDY65732.1|	--*-	BnaCnng48510D [Brassica napus]		
Niben101Scf05702g02010.1	sp|Q38857|XTH22_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR008264 (Beta-glucanase), IPR010713 (Xyloglucan endo-transglycosylase, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf04113g17004.1	ref|XP_002302027.2|	*-*-	isoflavone reductase family protein [Populus trichocarpa] gb|EEE81300.2| isoflavone reductase family protein [Populus trichocarpa]		
Niben101Scf02929g00065.1			Unknown protein		
Niben101Scf00113g05011.1			Unknown protein		
Niben101Scf10852g02002.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf00290g00015.1	AT2G17820.1	*-**	histidine kinase 1 LENGTH=1207	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0016020 (membrane), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00914g04003.1	sp|Q9FLS0|FB253_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf05087g03005.1	AT2G28810.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=340	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08533g00006.1	sp|Q8SQQ3|KAE1_ENCCU	***-	tRNA N6-adenosine threonylcarbamoyltransferase	IPR000905 (Gcp-like domain), IPR017861 (Kae1/YgjD family)	
Niben101Scf01655g03008.1	sp|W0HFK8|XYN1_RHIOR	*-*-	Endo-1,4-beta-xylanase 1	IPR001000 (Glycoside hydrolase, family 10), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf10055g10004.1	sp|Q9LHP1|RL74_ARATH	***-	60S ribosomal protein L7-4	IPR005998 (Ribosomal protein L7, eukaryotic)	
Niben101Scf14922g00008.1			Unknown protein		
Niben101Scf02455g03033.1	AT1G80530.1	***-	Major facilitator superfamily protein LENGTH=561	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf07048g02020.1	sp|Q9LEC8|DHEB_NICPL	***-	Glutamate dehydrogenase B	IPR006095 (Glutamate/phenylalanine/leucine/valine dehydrogenase), IPR016040 (NAD(P)-binding domain)	GO:0006520 (cellular amino acid metabolic process), GO:0016491 (oxidoreductase activity), GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf03080g04027.1	AT3G50440.1	***-	methyl esterase 10 LENGTH=288	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00773g10002.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Ctg04052g00001.1	sp|P52303|AP1B1_RAT	--*-	AP-1 complex subunit beta-1	IPR011989 (Armadillo-like helical), IPR026739 (AP complex subunit beta)	GO:0016192 (vesicle-mediated transport)
Niben101Scf11469g00014.1	gb|AGZ19448.1|	***-	APOLLO [Boechera sp. IPK 66]		
Niben101Scf02404g01015.1	sp|D1I234|DRE2_VITVI	***-	Anamorsin homolog	IPR007785 (Anamorsin)	GO:0005737 (cytoplasm), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf31689g00006.1	sp|Q8GXJ4|GLR34_ARATH	****	Glutamate receptor 3.4	IPR017103 (Ionotropic glutamate receptor, plant), IPR028082 (Periplasmic binding protein-like I)	GO:0004970 (ionotropic glutamate receptor activity), GO:0016020 (membrane)
Niben101Scf00704g01019.1	sp|Q9ZUW3|PP172_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04847g03022.1	AT1G55810.1	****	uridine kinase-like 3 LENGTH=466	IPR000764 (Uridine kinase like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029057 (Phosphoribosyltransferase-like)	GO:0004849 (uridine kinase activity), GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0044206 (UMP salvage)
Niben101Scf01961g02006.1	AT4G04340.2	*-*-	ERD (early-responsive to dehydration stress) family protein LENGTH=772	IPR003864 (Domain of unknown function DUF221)	GO:0016020 (membrane)
Niben101Scf06186g07008.1	emb|CDX91647.1|	***-	BnaC02g15130D [Brassica napus]		
Niben101Scf01927g05014.1	sp|Q09130|IF2G_SCHPO	*-*-	Eukaryotic translation initiation factor 2 subunit gamma	IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal)	
Niben101Scf03068g00024.1	AT1G58290.1	****	Glutamyl-tRNA reductase family protein LENGTH=543	IPR000343 (Tetrapyrrole biosynthesis, glutamyl-tRNA reductase), IPR016040 (NAD(P)-binding domain)	GO:0008883 (glutamyl-tRNA reductase activity), GO:0033014 (tetrapyrrole biosynthetic process), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02864g05009.1			Unknown protein		
Niben101Scf04464g03005.1			Unknown protein		
Niben101Scf02756g00004.1	sp|P26882|PPID_BOVIN	*-*-	Peptidyl-prolyl cis-trans isomerase D	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR011990 (Tetratricopeptide-like helical domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0005515 (protein binding), GO:0006457 (protein folding)
Niben101Scf01673g02007.1	AT5G55910.1	*-*-	D6 protein kinase LENGTH=498	IPR011009 (Protein kinase-like domain), IPR011993 (Pleckstrin homology-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03471g02003.1	AT1G75710.1	*-*-	C2H2-like zinc finger protein LENGTH=462	IPR007087 (Zinc finger, C2H2), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain)	GO:0003950 (NAD+ ADP-ribosyltransferase activity), GO:0046872 (metal ion binding)
Niben101Scf10316g03002.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf02564g03007.1	sp|Q9T068|EPFL2_ARATH	***-	EPIDERMAL PATTERNING FACTOR-like protein 2		
Niben101Scf16022g01028.1	ref|XP_002510688.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF52875.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03350g03001.1	sp|Q40704|MADS3_ORYSJ	****	MADS-box transcription factor 3	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf07103g01020.1	sp|Q06GP7|CYF_PIPCE	***-	Apocytochrome f	IPR002325 (Cytochrome f), IPR004282 (Chloroplast envelope membrane protein, CemA), IPR024058 (Cytochrome f  transmembrane anchor), IPR024094 (Cytochrome f large domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0031361 (integral component of thylakoid membrane)
Niben101Scf02804g00003.1	sp|P37351|RPIB_ECOLI	*-**	Ribose-5-phosphate isomerase B	IPR003500 (Sugar-phosphate isomerase, RpiB/LacA/LacB family), IPR012100 (DNA-damage-repair/toleration protein, DRT102), IPR014710 (RmlC-like jelly roll fold)	GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity)
Niben101Scf10997g02005.1			Unknown protein		
Niben101Scf08457g00003.1	sp|Q55721|FBT_SYNY3	***-	Folate-biopterin transporter	IPR004324 (Folate-biopterin transporter), IPR020846 (Major facilitator superfamily domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf03937g00009.1	sp|P00303|BABL_CUCSA	***-	Basic blue protein	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf13058g00006.1	sp|Q8H1G0|GAT28_ARATH	*-**	GATA transcription factor 28	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00024g02014.1	sp|P13650|DHGB_ACICA	*-*-	Quinoprotein glucose dehydrogenase B	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016901 (oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor), GO:0048038 (quinone binding)
Niben101Scf01285g02014.1			Unknown protein		
Niben101Scf04992g03010.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf04114g01043.1	gb|ACZ52183.1|	***-	ribosomal protein L10 (mitochondrion) [Digitalis purpurea]		
Niben101Scf02914g02038.1	sp|Q949M2|FABG4_BRANA	****	3-oxoacyl-[acyl-carrier-protein] reductase 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0004316 (3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00773g13003.1	sp|Q9MTM3|RPOC2_OENEH	*-**	DNA-directed RNA polymerase subunit beta''	IPR007081 (RNA polymerase Rpb1, domain 5)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf04632g07004.1	sp|P0DI50|CASP1_TOBAC	***-	Casparian strip membrane protein 1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf11757g03005.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf09004g02025.1	AT4G15010.1	***-	Mitochondrial substrate carrier family protein LENGTH=378	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf03455g01009.1	sp|Q9ASX9|BH144_ARATH	***-	Transcription factor bHLH144	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf37685g00004.1	AT2G26460.1	***-	RED family protein LENGTH=585	IPR012492 (Protein RED, C-terminal), IPR012916 (RED-like, N-terminal)	GO:0005634 (nucleus)
Niben101Scf00361g01010.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2		
Niben101Scf05896g02009.1	sp|Q9T0F1|FB226_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02994g01001.1	sp|Q92180|GCNT1_BOVIN	*-**	Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf01418g01007.1	gb|AAR87850.2|	*-*-	fertilization-related kinase 1 [Solanum chacoense]	IPR017441 (Protein kinase, ATP binding site)	GO:0005524 (ATP binding)
Niben101Scf21699g00026.1	sp|A8AJF8|RIHA_CITK8	***-	Pyrimidine-specific ribonucleoside hydrolase RihA	IPR001910 (Inosine/uridine-preferring nucleoside hydrolase domain), IPR023186 (Inosine/uridine-preferring nucleoside hydrolase)	
Niben101Scf11019g01008.1	dbj|BAO49705.1|	*-*-	nuclear pore complex protein Nup136a [Nicotiana benthamiana]		
Niben101Scf04473g02002.1	sp|O45379|ARL3_CAEEL	***-	ADP-ribosylation factor-like protein 3	IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf02368g00013.1	AT3G06630.1	*-**	protein kinase family protein LENGTH=671	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03413g02027.1	sp|A1USL4|RL3_BARBK	***-	50S ribosomal protein L3	IPR000597 (Ribosomal protein L3), IPR009000 (Translation protein, beta-barrel domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05713g05004.1	emb|CDX92863.1|	***-	BnaC07g41210D [Brassica napus]	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf07783g01017.1	ref|NP_001042723.2|	***-	[Oryza sativa Japonica Group] dbj|BAF04637.2| [Oryza sativa Japonica Group]		
Niben101Scf08504g03002.1	sp|Q10M00|C3H22_ORYSJ	*-*-	Zinc finger CCCH domain-containing protein 22	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00960g17013.1	sp|O30913|EFG1_BORBU	--*-	Elongation factor G 1		
Niben101Scf04422g05002.1			Unknown protein		
Niben101Scf08194g02027.1			Unknown protein		
Niben101Scf00712g10027.1	gb|KEH43831.1|	*-*-	PPR superfamily protein [Medicago truncatula]	IPR029159 (Casein Kinase 2 substrate)	
Niben101Scf06596g03014.1	sp|B3CRZ3|DAPE_ORITI	--*-	Succinyl-diaminopimelate desuccinylase	IPR002933 (Peptidase M20)	GO:0004046 (aminoacylase activity), GO:0005737 (cytoplasm), GO:0006520 (cellular amino acid metabolic process), GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf19171g01042.1	sp|Q769F9|TMEDA_DICDI	***-	Transmembrane emp24 domain-containing protein A	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf01249g03027.1	sp|B0KCK8|RL29_THEP3	--*-	50S ribosomal protein L29	IPR001854 (Ribosomal protein L29)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02568g02002.1	AT4G34980.1	*-*-	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf01683g14003.1	gb|AIE43900.1|	*-*-	WRKY transcription factor 116 [Gossypium hirsutum]		
Niben101Scf04944g00019.1	AT2G25605.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 75 Blast hits to 75 proteins in 20 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). LENGTH=200		
Niben101Scf25021g01021.1	sp|O48724|WEB1_ARATH	***-	Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1	IPR008545 (WEB family)	
Niben101Scf03934g04015.1			Unknown protein		
Niben101Scf03885g03008.1	AT4G32920.1	*-*-	glycine-rich protein LENGTH=1432	IPR009030 (Insulin-like growth factor binding protein, N-terminal)	
Niben101Scf13577g00007.1	sp|P92934|AAP6_ARATH	***-	Amino acid permease 6	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf01897g03001.1	AT3G08840.2	****	D-alanine--D-alanine ligase family LENGTH=937	IPR005905 (D-alanine--D-alanine ligase), IPR011761 (ATP-grasp fold), IPR016185 (Pre-ATP-grasp domain)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008716 (D-alanine-D-alanine ligase activity), GO:0046872 (metal ion binding)
Niben101Scf24330g00014.1	sp|O24409|IAA19_ARATH	***-	Auxin-responsive protein IAA19	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf04673g02005.1	AT5G53300.1	***-	ubiquitin-conjugating enzyme 10 LENGTH=148	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf01911g04009.1	sp|Q6DBP8|GAT11_ARATH	****	GATA transcription factor 11	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08812g02002.1	sp|P93400|PLDA1_TOBAC	*-*-	Phospholipase D alpha 1	IPR000008 (C2 domain), IPR015679 (Phospholipase D family)	GO:0003824 (catalytic activity), GO:0005515 (protein binding), GO:0008152 (metabolic process)
Niben101Scf10635g01003.1	sp|B0VX69|SETD3_CALJA	***-	Histone-lysine N-methyltransferase setd3	IPR001214 (SET domain), IPR015353 (Rubisco LSMT, substrate-binding domain)	GO:0005515 (protein binding)
Niben101Scf03985g03019.1	sp|Q8LDF9|HMGB7_ARATH	*-*-	High mobility group B protein 7	IPR009071 (High mobility group box domain)	
Niben101Scf02169g00002.1	sp|F4IVI0|BUB1_ARATH	*-*-	Mitotic checkpoint serine/threonine-protein kinase BUB1	IPR015661 (Mitotic checkpoint serine/threonine protein kinase Bub1/Mitotic spindle checkpoint component Mad3)	
Niben101Scf04692g00001.1			Unknown protein		
Niben101Scf02159g01008.1	sp|Q5ZJL8|ABHDD_CHICK	***-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01375g02012.1	sp|P71377|FTSH_HAEIN	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf02031g05009.1	sp|Q8CIM8|INT4_MOUSE	*-*-	Integrator complex subunit 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf08751g00011.1	sp|Q54G80|TF2AA_DICDI	*-**	Transcription initiation factor IIA subunit 1	IPR004855 (Transcription factor IIA, alpha/beta subunit)	GO:0005672 (transcription factor TFIIA complex), GO:0006367 (transcription initiation from RNA polymerase II promoter)
Niben101Scf08755g03001.1	sp|Q9LTV8|PP224_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03154g05007.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01942g02005.1	sp|Q98TX3|PDCD4_CHICK	*-*-	Programmed cell death protein 4	IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02249g05011.1	sp|P93654|SYP22_ARATH	***-	Syntaxin-22	IPR010989 (t-SNARE)	GO:0005515 (protein binding), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf01124g05002.1	sp|A7NY33|PER4_VITVI	****	Peroxidase 4	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03164g07006.1	sp|P28011|AAT1_MEDSA	***-	Aspartate aminotransferase 1	IPR000796 (Aspartate/other aminotransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02354g09002.1	AT2G25737.1	***-	Sulfite exporter TauE/SafE family protein LENGTH=476	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf06277g05019.1	sp|Q9HJX7|HELS_THEAC	*-**	ATP-dependent DNA helicase Hel308	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR016438 (RNA helicase, ATP-dependent, SK12/DOB1), IPR025696 (rRNA-processing arch domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf10015g10015.1	sp|Q6DRC3|CU059_DANRE	-**-	UPF0769 protein C21orf59 homolog	IPR021298 (Protein of unknown function DUF2870)	
Niben101Scf06444g01002.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf00058g03001.1	sp|Q9SUD8|PP340_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02012g01005.1	ref|XP_002520205.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF42260.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf04820g03024.1	AT1G15550.1	***-	gibberellin 3-oxidase 1 LENGTH=358	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02793g12005.1	sp|Q1EA11|CCR4_COCIM	***-	Glucose-repressible alcohol dehydrogenase transcriptional effector	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Ctg06687g00001.1	sp|Q7XJJ7|FAAH_ARATH	*-*-	Fatty acid amide hydrolase		
Niben101Scf02111g19003.1	sp|Q9LSM9|SCP33_ARATH	*-**	Serine carboxypeptidase-like 33	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03385g06003.1	AT4G34270.1	***-	TIP41-like family protein LENGTH=290	IPR007303 (TIP41-like protein)	
Niben101Scf05108g03002.1	sp|P09003|MI25_TOBAC	*-**	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf08526g04001.1	AT1G34190.1	***-	NAC domain containing protein 17 LENGTH=557	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03713g00001.1	sp|Q9FGQ7|CCD32_ARATH	***-	Cyclin-D3-2	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf07909g04005.1	sp|Q7ZU90|CHD1L_DANRE	*-**	Chromodomain-helicase-DNA-binding protein 1-like	IPR001650 (Helicase, C-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf11047g00001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05529g00001.1	sp|Q8NBP0|TTC13_HUMAN	***-	Tetratricopeptide repeat protein 13	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01459g01002.1	ref|NP_001119241.1|	*-*-	hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] gb|AED92468.1| hydrolase, alpha/beta fold family protein [Arabidopsis thaliana]		
Niben101Scf04060g00001.1	AT1G23000.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=358	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf01866g01011.1	sp|Q3EDF8|PPR28_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf03952g01002.1	AT5G53130.1	****	cyclic nucleotide gated channel 1 LENGTH=716	IPR005821 (Ion transport domain), IPR014710 (RmlC-like jelly roll fold)	GO:0005216 (ion channel activity), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf11161g01014.1	sp|Q08211|DHX9_HUMAN	****	ATP-dependent RNA helicase A	IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf17267g00001.1	gb|KEH29083.1|	****	HXXXD-type acyl-transferase family protein [Medicago truncatula]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03766g03006.1	emb|CDY13694.1|	***-	BnaA06g32290D [Brassica napus]		
Niben101Scf06017g00008.1	sp|P13678|KPC3_DROME	*-**	Protein kinase C	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg14470g00002.1	sp|Q9SK27|ENL1_ARATH	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf06837g00001.1	gb|ADY76580.1|	*-*-	translocon at inner membrane of chloroplasts 21 [Brassica napus]	IPR022051 (Protein of unknown function DUF3611)	
Niben101Scf10369g01002.1	AT3G22680.1	****	RNA-DIRECTED DNA METHYLATION 1 LENGTH=163	IPR015270 (Protein RDM1)	GO:0005634 (nucleus), GO:0044030 (regulation of DNA methylation)
Niben101Scf19584g00015.1	AT1G02816.1	***-	Protein of unknown function, DUF538 LENGTH=166	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf05106g00013.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03979g02012.1			Unknown protein		
Niben101Scf04655g04019.1	sp|Q58FS3|RAD_ANTMA	*-*-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05708g00007.1			Unknown protein		
Niben101Scf02732g00012.1	sp|Q9SC19|UPTG1_SOLTU	***-	Alpha-1,4-glucan-protein synthase [UDP-forming] 1	IPR004901 (Reversibly glycosylated polypeptide family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016866 (intramolecular transferase activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf01683g03006.1	sp|Q9LS76|TPS15_ARATH	*-**	Terpenoid synthase 15	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf05354g00008.1	sp|O48822|Y2794_ARATH	***-	WEB family protein		
Niben101Scf01834g04027.1	AT5G65550.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=466	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05226g00007.1	ref|XP_002510642.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF52829.1| conserved hypothetical protein [Ricinus communis]	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf07716g00004.1	AT3G08600.1	***-	Protein of unknown function (DUF1191) LENGTH=316	IPR010605 (Protein of unknown function DUF1191)	
Niben101Scf11915g00014.1	sp|Q1JQE0|SNW1_BOVIN	*-*-	SNW domain-containing protein 1	IPR017862 (SKI-interacting protein, SKIP)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf00131g00006.1	AT1G65690.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=252	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf01888g04016.1			Unknown protein		
Niben101Scf05118g04014.1	sp|Q9LQ81|ADF10_ARATH	****	Actin-depolymerizing factor 10	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf07227g00011.1	sp|Q8WXF0|SRS12_HUMAN	*-*-	Serine/arginine-rich splicing factor 12	IPR001878 (Zinc finger, CCHC-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf04362g07009.1	sp|B9SBU9|TPS5_RICCO	****	Terpene synthase 5	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf00087g00009.1	sp|Q9FIX2|AIG2L_ARATH	*-*-	AIG2-like protein	IPR013024 (Butirosin biosynthesis, BtrG-like)	
Niben101Scf03443g00005.1	sp|Q7ZYD5|SCMC2_XENLA	--**	Calcium-binding mitochondrial carrier protein SCaMC-2	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01876g01005.1	sp|Q6TFL4|KLH24_HUMAN	*-*-	Kelch-like protein 24	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf03856g00004.1	sp|Q8KAE1|PGK_CHLTE	****	Phosphoglycerate kinase	IPR001576 (Phosphoglycerate kinase)	GO:0004618 (phosphoglycerate kinase activity), GO:0006096 (glycolytic process)
Niben101Scf04852g01009.1	sp|P41777|NOLC1_RAT	*-*-	Nucleolar and coiled-body phosphoprotein 1	IPR006594 (LisH dimerisation motif), IPR007718 (SRP40, C-terminal)	GO:0005515 (protein binding)
Niben101Scf08088g03012.1	AT2G33320.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=602	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf01273g02005.1	gb|AIE89791.1|	*-*-	SQUAMOSA promoter binding protein-like 2, partial [Salvia miltiorrhiza]		
Niben101Scf07590g01002.1	sp|Q84MC7|PYL9_ARATH	***-	Abscisic acid receptor PYL9	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf05822g03006.1	sp|O95696|BRD1_HUMAN	*-*-	Bromodomain-containing protein 1	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf16206g00012.1	emb|CDX70166.1|	***-	BnaA10g25150D [Brassica napus]		
Niben101Scf00239g02013.1	sp|O23169|PP353_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02846g01008.1			Unknown protein		
Niben101Scf03607g02008.1	ref|XP_002153314.1|	*-**	histone acetyltransferase complex component Epl1, putative [Talaromyces marneffei ATCC 18224] gb|EEA18929.1| histone acetyltransferase complex component Epl1, putative [Talaromyces marneffei ATCC 18224]	IPR019542 (Enhancer of polycomb-like, N-terminal), IPR024943 (Enhancer of polycomb protein)	GO:0032777 (Piccolo NuA4 histone acetyltransferase complex), GO:0035267 (NuA4 histone acetyltransferase complex)
Niben101Scf04801g01021.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00366g00009.1	ref|XP_007039992.1|	*-*-	F5O11.10 isoform 1 [Theobroma cacao] gb|EOY24493.1| F5O11.10 isoform 1 [Theobroma cacao]		
Niben101Scf05330g03004.1	sp|Q10JI3|NNJA3_ORYSJ	*-*-	Ninja-family protein	IPR012463 (Ninja)	
Niben101Scf11186g00005.1	sp|C4LAP0|MTNN_TOLAT	--*-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	IPR018017 (Nucleoside phosphorylase)	GO:0003824 (catalytic activity), GO:0009116 (nucleoside metabolic process)
Niben101Scf02852g03019.1			Unknown protein		
Niben101Scf00400g00006.1	sp|Q9LVA0|BAG7_ARATH	***-	BAG family molecular chaperone regulator 7	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf04843g00008.1	sp|Q9LPM9|BCAT6_ARATH	****	Branched-chain-amino-acid aminotransferase 6	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0004084 (branched-chain-amino-acid transaminase activity), GO:0008152 (metabolic process), GO:0009081 (branched-chain amino acid metabolic process)
Niben101Scf08895g01018.1	sp|Q4L5B9|MNTH_STAHJ	****	Divalent metal cation transporter MntH	IPR001046 (NRAMP family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00984g09006.1	ref|YP_004927571.1|	--*-	orf448 (mitochondrion) [Brassica carinata] gb|AEH43586.1| orf448 [Brassica carinata]		
Niben101Scf00563g01003.1	AT1G52870.2	****	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein LENGTH=366	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf07724g01003.1	sp|Q9SH60|PP103_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04126g01013.1	sp|Q8RQD1|GLND_AZOBR	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf01418g03005.1	AT2G25530.1	***-	AFG1-like ATPase family protein LENGTH=655	IPR005654 (ATPase, AFG1-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf10381g03006.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00870g13004.1	sp|Q8GYL9|BRXL2_ARATH	***-	Protein Brevis radix-like 2	IPR013591 (Brevis radix (BRX) domain), IPR027988 (Transcription factor  BREVIS RADIX, N-terminal domain)	
Niben101Scf01111g04025.1	AT5G11850.1	*-**	Protein kinase superfamily protein LENGTH=880	IPR000014 (PAS domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004871 (signal transducer activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12589g00005.1	sp|Q5IH13|SPP2_TOBAC	****	Sucrose-phosphatase 2	IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR013679 (Sucrose-6-phosphate phosphohydrolase C-terminal), IPR023214 (HAD-like domain)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0005986 (sucrose biosynthetic process), GO:0008152 (metabolic process), GO:0016791 (phosphatase activity), GO:0050307 (sucrose-phosphate phosphatase activity)
Niben101Scf02182g01012.1	sp|Q9LQQ4|H2B1_ARATH	***-	Histone H2B.1	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	
Niben101Scf07741g00001.1	sp|Q6LGH5|BETA_PHOPR	****	Oxygen-dependent choline dehydrogenase	IPR012132 (Glucose-methanol-choline oxidoreductase)	GO:0006066 (alcohol metabolic process), GO:0008812 (choline dehydrogenase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10189g02009.1	sp|A6TGM3|FADA_KLEP7	***-	3-ketoacyl-CoA thiolase	IPR002155 (Thiolase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Ctg14583g00002.1	sp|Q564K3|CND2_ARATH	*-**	Condensin complex subunit 2	IPR022816 (Condensin complex subunit 2/barren)	GO:0000796 (condensin complex), GO:0007076 (mitotic chromosome condensation)
Niben101Scf10015g10014.1	AT3G12360.1	***-	Ankyrin repeat family protein LENGTH=590	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain), IPR027001 (Caskin/Ankyrin repeat-containing protein)	GO:0005515 (protein binding)
Niben101Scf03551g01010.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf05516g03021.1	sp|Q9SFC7|FB135_ARATH	*-*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf04400g02002.1	AT5G06050.1	*-**	Putative methyltransferase family protein LENGTH=682	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf19214g00008.1	ref|XP_002532655.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29728.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05574g02011.1	sp|O22286|BPM3_ARATH	***-	BTB/POZ and MATH domain-containing protein 3	IPR008974 (TRAF-like), IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf02792g02001.1	gb|KEH31712.1|	****	calmodulin-binding protein [Medicago truncatula]	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf09442g03002.1	AT4G35690.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=284	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf00451g00022.1	sp|P15688|NU2M_BETVU	--*-	NADH-ubiquinone oxidoreductase chain 2		
Niben101Scf03522g00007.1	sp|O82200|MIOX2_ARATH	****	Inositol oxygenase 2	IPR007828 (Inositol oxygenase)	GO:0005506 (iron ion binding), GO:0005737 (cytoplasm), GO:0019310 (inositol catabolic process), GO:0050113 (inositol oxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01847g05016.1	gb|AAF27285.1|	*-*-	eukaryotic initiation factor 4B [Arabidopsis thaliana]	IPR010433 (Plant specific eukaryotic initiation factor 4B)	
Niben101Scf04011g06005.1	AT5G55090.1	*-*-	mitogen-activated protein kinase kinase kinase 15 LENGTH=448	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03064g02004.1	sp|Q37684|COX2_TUPGL	*-**	Cytochrome c oxidase subunit 2	IPR008972 (Cupredoxin)	GO:0004129 (cytochrome-c oxidase activity), GO:0005507 (copper ion binding), GO:0016020 (membrane)
Niben101Scf02354g04005.1	sp|Q9LYZ9|PP362_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04899g02016.1	sp|A2X635|MOC2A_ORYSI	****	Molybdopterin synthase sulfur carrier subunit	IPR003749 (ThiamineS/Molybdopterin converting factor subunit 1), IPR012675 (Beta-grasp domain)	GO:0005829 (cytosol), GO:0006777 (Mo-molybdopterin cofactor biosynthetic process)
Niben101Scf02627g00008.1	emb|CDY17280.1|	***-	BnaA10g09140D [Brassica napus]		
Niben101Scf05439g02038.1	ref|YP_009045821.1|	*-*-	orf116d (mitochondrion) [Batis maritima] gb|AIC83424.1| orf116d (mitochondrion) [Batis maritima]		
Niben101Scf04477g02008.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf23606g00005.1	sp|A6MFK9|CRVP_DEMVE	***-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf02411g01002.1	AT4G20860.1	*-**	FAD-binding Berberine family protein LENGTH=530	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02380g01006.1	sp|Q8LBW3|LBD12_ARATH	***-	LOB domain-containing protein 12	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf01212g00014.1	sp|O82647|PDC1_ARATH	*-*-	Pyruvate decarboxylase 1	IPR012001 (Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain), IPR029061 (Thiamin diphosphate-binding fold)	GO:0030976 (thiamine pyrophosphate binding)
Niben101Scf00784g00007.1	emb|CDY60156.1|	***-	BnaAnng16520D [Brassica napus]	IPR007033 (Transcriptional activator, plants)	
Niben101Scf07202g00005.1	gb|EMT13138.1|	-**-	Werner syndrome ATP-dependent helicase-like protein [Aegilops tauschii]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf12084g01014.1	AT4G39490.1	*-*-	cytochrome P450, family 96, subfamily A, polypeptide 10 LENGTH=519	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01123g01011.1	AT5G47310.1	***-	PPPDE putative thiol peptidase family protein LENGTH=245	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf00906g00014.1	sp|P93003|TFL1_ARATH	***-	Protein TERMINAL FLOWER 1	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf08206g01021.1	sp|P61286|PABP1_BOVIN	*-**	Polyadenylate-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07564g01023.1	sp|Q9UZK1|ARLMC_PYRAB	*-**	23S rRNA (uracil(747)-C(5))-methyltransferase	IPR004398 (RNA methyltransferase, RsmD), IPR010280 ((Uracil-5)-methyltransferase family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006396 (RNA processing), GO:0008168 (methyltransferase activity), GO:0008173 (RNA methyltransferase activity), GO:0031167 (rRNA methylation)
Niben101Scf01721g00009.1	sp|Q9FYC1|CHX4_ARATH	****	Cation/H(+) antiporter 4	IPR006153 (Cation/H+ exchanger), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03795g01003.1	sp|Q9XGA1|KPRS4_SPIOL	***-	Ribose-phosphate pyrophosphokinase 4	IPR029057 (Phosphoribosyltransferase-like), IPR029099 (Ribose-phosphate pyrophosphokinase, N-terminal domain)	
Niben101Scf04063g00006.1	sp|H2E7T9|SMTL2_BOTBR	--**	Sterol methyltransferase-like 2	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf07034g05008.1	sp|Q944S9|MAD16_ORYSJ	*-*-	MADS-box transcription factor 16	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf04655g02007.1	sp|Q85FM2|PSBD_ADICA	*-**	Photosystem II D2 protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf05230g03012.1	AT3G27470.1	***-	Protein of unknown function (DUF707) LENGTH=398	IPR007877 (Protein of unknown function DUF707)	
Niben101Ctg15246g00001.1	sp|Q8RXN0|AB11G_ARATH	*-*-	ABC transporter G family member 11	IPR013525 (ABC-2 type transporter)	GO:0016020 (membrane)
Niben101Scf04352g00012.1	sp|Q8BFS9|ASND1_MOUSE	****	Asparagine synthetase domain-containing protein 1	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004066 (asparagine synthase (glutamine-hydrolyzing) activity), GO:0006529 (asparagine biosynthetic process)
Niben101Scf02368g00014.1	sp|Q99PV0|PRP8_MOUSE	*-**	Pre-mRNA-processing-splicing factor 8	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR012984 (PROCT domain), IPR027652 (Pre-mRNA-processing-splicing factor 8)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005515 (protein binding), GO:0005681 (spliceosomal complex)
Niben101Scf22062g00011.1	sp|Q55FJ2|WDR91_DICDI	*-*-	WD repeat-containing protein 91 homolog		
Niben101Scf08566g08008.1	sp|Q312H2|FABZ_DESAG	*-*-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	IPR029069 (HotDog domain)	
Niben101Scf01438g09001.1	sp|Q9FKM7|IAA33_ARATH	***-	Auxin-responsive protein IAA33	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf03565g05003.1	sp|B5BD42|AES_SALPK	***-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf07728g00001.1	sp|Q8L9S1|R18AL_ARATH	***-	60S ribosomal protein L18a-like protein		
Niben101Scf02891g04025.1	sp|A8ACN5|ATPE_CITK8	--*-	ATP synthase epsilon chain		
Niben101Scf04368g00007.1	sp|Q9STF0|LRKS3_ARATH	****	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06233g01004.1	sp|O22901|BH151_ARATH	--*-	Transcription factor UPBEAT1		
Niben101Scf00349g01008.1	sp|Q9ZV31|PUB12_ARATH	*-*-	U-box domain-containing protein 12	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf01640g01004.1	sp|Q91YR5|MET13_MOUSE	--**	Methyltransferase-like protein 13	IPR026635 (N-lysine methyltransferase See1-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf09372g01008.1	sp|Q6NPS8|NDOR1_ARATH	****	NADPH-dependent diflavin oxidoreductase 1	IPR001094 (Flavodoxin), IPR023173 (NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3), IPR029039 (Flavoprotein-like)	GO:0003958 (NADPH-hemoprotein reductase activity), GO:0005506 (iron ion binding), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03779g01005.1	sp|Q0WLB5|CLAH2_ARATH	*-*-	Clathrin heavy chain 2	IPR011990 (Tetratricopeptide-like helical domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport)
Niben101Scf09760g00001.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03167g02025.1	sp|P29001|INVA_VIGRR	****	Acid beta-fructofuranosidase	IPR001362 (Glycoside hydrolase, family 32), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021792 (Beta-fructofuranosidase), IPR023296 (Glycosyl hydrolase, five-bladed beta-propellor domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004564 (beta-fructofuranosidase activity), GO:0004575 (sucrose alpha-glucosidase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06332g00011.1	sp|P51110|DFRA_VITVI	***-	Dihydroflavonol-4-reductase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf02937g01003.1	sp|B5YZ71|HSLU_ECO5E	--*-	ATP-dependent protease ATPase subunit HslU	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf02914g02037.1	sp|Q5A4W8|BDF1_CANAL	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf02805g07011.1	AT2G01220.2	***-	Nucleotidylyl transferase superfamily protein LENGTH=388	IPR008136 (CinA, C-terminal), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process)
Niben101Scf06614g00003.1	sp|Q2HIV9|BH035_ARATH	--*-	Transcription factor bHLH35		
Niben101Scf05044g04023.1	AT5G25590.1	*-*-	Protein of unknown function (DUF630 and DUF632) LENGTH=775	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf04123g01012.1	emb|CDY00658.1|	***-	BnaC03g36420D [Brassica napus]		
Niben101Scf07508g01007.1			Unknown protein		
Niben101Scf02362g02009.1	gb|KEH35820.1|	*-*-	RING/FYVE/PHD zinc finger protein [Medicago truncatula]		
Niben101Scf01677g05007.1	sp|P04782|CB24_PETSP	***-	Chlorophyll a-b binding protein 25, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf10688g01013.1	sp|Q9SK27|ENL1_ARATH	*-*-	Early nodulin-like protein 1	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf04641g01003.1	sp|O80713|SDR3A_ARATH	****	Short-chain dehydrogenase reductase 3a	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf12321g01033.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf32086g00002.1	AT1G34750.1	***-	Protein phosphatase 2C family protein LENGTH=282	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf02568g00011.1	sp|A1JK30|FADJ_YERE8	*-*-	Fatty acid oxidation complex subunit alpha	IPR029045 (ClpP/crotonase-like domain)	
Niben101Scf03548g02023.1			Unknown protein		
Niben101Scf05621g05004.1	sp|P15252|REF_HEVBR	***-	Rubber elongation factor protein	IPR008802 (Rubber elongation factor)	
Niben101Scf04783g08006.1	emb|CDX92561.1|	*-*-	BnaA10g16000D [Brassica napus]		
Niben101Scf06517g00010.1	sp|Q39236|T2AG_ARATH	****	Transcription initiation factor IIA subunit 2	IPR003194 (Transcription initiation factor IIA, gamma subunit), IPR009083 (Transcription factor IIA, helical), IPR009088 (Transcription factor IIA, beta-barrel)	GO:0005672 (transcription factor TFIIA complex), GO:0006367 (transcription initiation from RNA polymerase II promoter)
Niben101Scf01849g00003.1	sp|Q9LR69|PPR8_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf11497g03005.1	AT2G44290.1	****	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=205	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf04223g00003.1	gb|ABF94922.1|	*-**	Glycosyl hydrolase family 10 protein, expressed [Oryza sativa Japonica Group]	IPR001000 (Glycoside hydrolase, family 10), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf13549g00006.1	sp|Q94C27|FB84_ARATH	*-*-	F-box protein	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf09074g00024.1	ref|NP_172160.4|	***-	P-loop containing nucle [Arabidopsis thaliana]	IPR010488 (Zeta toxin domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016301 (kinase activity)
Niben101Scf05325g00014.1	sp|Q9M099|SCP24_ARATH	****	Serine carboxypeptidase 24	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf07040g00001.1	AT1G09160.2	***-	Protein phosphatase 2C family protein LENGTH=428	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf10818g00022.1	AT1G29520.1	***-	AWPM-19-like family protein LENGTH=158	IPR008390 (AWPM-19-like)	
Niben101Scf00033g07016.1	AT5G08750.3	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=370	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf11865g01003.1	ref|XP_003615152.1|	****	2-dehydro-3-deoxyphosphoheptonate aldolase (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase) [Medicago truncatula] gb|AES98110.1| phospho-2-dehydro-3-deoxyheptonate aldolase [Medicago truncatula]	IPR002480 (DAHP synthetase, class II)	GO:0003849 (3-deoxy-7-phosphoheptulonate synthase activity), GO:0009073 (aromatic amino acid family biosynthetic process)
Niben101Scf02059g02016.1	AT5G25270.1	*-*-	Ubiquitin-like superfamily protein LENGTH=658		
Niben101Scf06157g00010.1	sp|O65202|ACOX1_ARATH	****	Peroxisomal acyl-coenzyme A oxidase 1	IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR012258 (Acyl-CoA oxidase), IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal)	GO:0003995 (acyl-CoA dehydrogenase activity), GO:0003997 (acyl-CoA oxidase activity), GO:0005777 (peroxisome), GO:0006631 (fatty acid metabolic process), GO:0006635 (fatty acid beta-oxidation), GO:0008152 (metabolic process), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05112g01009.1	ref|XP_007038839.1|	***-	Pentatricopeptide repeat superfamily protein, putative isoform 1 [Theobroma cacao] gb|EOY23340.1| Pentatricopeptide repeat superfamily protein, putative isoform 1 [Theobroma cacao]	IPR012349 (FMN-binding split barrel)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05813g07008.1	sp|O80713|SDR3A_ARATH	****	Short-chain dehydrogenase reductase 3a	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf05310g04020.1	gb|AGK30009.1|	*-*-	3-ketoacyl-CoA synthase [Gossypium raimondii]	IPR002076 (ELO family)	GO:0016021 (integral component of membrane)
Niben101Scf02937g08007.1			Unknown protein		
Niben101Scf03595g07001.1	sp|Q3B7N1|CHD1L_BOVIN	*-**	Chromodomain-helicase-DNA-binding protein 1-like	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf02156g02014.1	sp|P28769|TCPA_ARATH	***-	T-complex protein 1 subunit alpha	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf16733g01047.1	ref|NP_191672.1|	****	alpha-1,4-galacturon [Arabidopsis thaliana] emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gb|AHL38722.1| glycosyltransferase, partial [Arabidopsis thaliana]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf02790g02015.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004842 (ubiquitin-protein transferase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016567 (protein ubiquitination), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00331g02006.1	sp|Q9EPK7|XPO7_MOUSE	***-	Exportin-7	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf12541g00004.1	sp|P18253|CYPH_SCHPO	****	Peptidyl-prolyl cis-trans isomerase	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf03739g05005.1	sp|Q9SHB5|WRK55_ARATH	--**	WRKY transcription factor 55	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09057g01009.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07278g01015.1	sp|B7GHJ8|HIS8_ANOFW	--*-	Histidinol-phosphate aminotransferase		
Niben101Scf06204g00001.1	AT1G48480.1	*-**	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01413g01011.1	ref|WP_030609432.1|	****	NADPH:quinone oxidoreductase [Streptomyces achromogenes]	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf14102g00005.1	sp|Q6XQ67|ADH5_SACPS	--*-	Alcohol dehydrogenase 5	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02511g02004.1	sp|Q9FK13|PDV1_ARATH	***-	Plastid division protein PDV1		
Niben101Scf12330g02004.1	sp|P34164|SIP2_YEAST	***-	SNF1 protein kinase subunit beta-2	IPR006828 (Association with the SNF1 complex (ASC) domain), IPR014756 (Immunoglobulin E-set), IPR030070 (SNF1-related protein kinase regulatory subunit beta-2)	GO:0005515 (protein binding)
Niben101Scf00370g03012.1	AT5G10250.1	***-	Phototropic-responsive NPH3 family protein LENGTH=607	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain), IPR029959 (Root phototropism protein 3-like)	GO:0016567 (protein ubiquitination)
Niben101Ctg16206g00001.1	sp|Q5SPX3|RN215_MOUSE	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf10713g00009.1	AT5G12040.1	***-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein LENGTH=369	IPR003010 (Carbon-nitrogen hydrolase)	GO:0006807 (nitrogen compound metabolic process), GO:0016810 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds)
Niben101Scf01767g03004.1	sp|Q9SXS8|ERF3_TOBAC	****	Ethylene-responsive transcription factor 3	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04740g00005.1	AT5G06850.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=794	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf00920g00002.1	gb|AAC72541.1|	*-*-	male sterility MS5 [Arabidopsis thaliana]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03779g05006.1	ref|XP_002526855.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35486.1| conserved hypothetical protein [Ricinus communis]	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf03793g02011.1			Unknown protein		
Niben101Scf00354g01001.1	emb|CDY53602.1|	*-*-	BnaC09g51900D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Ctg16389g00002.1			Unknown protein		
Niben101Scf12725g00032.1	gb|AFV66582.1|	*-*-	LSG [Saccharum hybrid cultivar]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf10579g01011.1			Unknown protein		
Niben101Ctg14448g00002.1	ref|XP_007051046.1|	***-	P-loop containing nucle [Theobroma cacao]		
Niben101Scf03223g04005.1	sp|P38055|YDJE_ECOLI	*-**	Inner membrane metabolite transport protein YdjE	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01539g02003.1	emb|CDX99259.1|	***-	BnaC05g33740D [Brassica napus]		
Niben101Scf13391g00007.1	AT3G11720.3	*-*-	Polyketide cyclase/dehydrase and lipid transport superfamily protein LENGTH=596	IPR023393 (START-like domain)	
Niben101Scf04403g03003.1	sp|Q72NX1|RIMP_LEPIC	*-*-	Ribosome maturation factor RimP	IPR003728 (Ribosome maturation factor RimP)	
Niben101Scf09107g01004.1	sp|Q9LIB2|PHS1_ARATH	*-**	Alpha-glucan phosphorylase 1	IPR000811 (Glycosyl transferase, family 35)	GO:0005975 (carbohydrate metabolic process), GO:0008184 (glycogen phosphorylase activity)
Niben101Scf06499g00015.1	ref|XP_007023081.1|	***-	WD repeat-containing protein 49 isoform 1 [Theobroma cacao] gb|EOY25703.1| WD repeat-containing protein 49 isoform 1 [Theobroma cacao]		
Niben101Scf01100g04002.1	emb|CDY00857.1|	***-	BnaCnng00570D [Brassica napus]		
Niben101Scf00773g14005.1	sp|P81898|PNAA_PRUDU	***-	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A	IPR021102 (Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A)	
Niben101Scf08028g00003.1	ref|XP_002529573.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF32807.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01201g00013.1	AT2G28130.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). LENGTH=458		
Niben101Scf15227g00004.1	sp|Q8VYG3|GUN16_ARATH	*-*-	Endoglucanase 16	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09556g02008.1	AT5G04460.1	*-*-	RING/U-box superfamily protein LENGTH=863	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01602g06016.1	sp|Q3T073|SERP2_BOVIN	****	Stress-associated endoplasmic reticulum protein 2	IPR010580 (Stress-associated endoplasmic reticulum protein)	GO:0005783 (endoplasmic reticulum)
Niben101Scf02026g08008.1	AT3G54460.1	***-	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein LENGTH=1378	IPR000330 (SNF2-related), IPR001810 (F-box domain), IPR011124 (Zinc finger, CW-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding)
Niben101Scf07829g00012.1	sp|Q0WKZ3|PP105_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06017g02008.1	sp|O14240|EAF6_SCHPO	*-*-	Chromatin modification-related protein eaf6	IPR015418 (Histone H4 acetyltransferase, NuA4 complex, Eaf6)	
Niben101Scf05804g05007.1	AT3G53270.1	*-*-	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein LENGTH=280	IPR019188 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43)	
Niben101Scf03865g01007.1	sp|Q9D113|DNLZ_MOUSE	*-**	DNL-type zinc finger protein	IPR007853 (Zinc finger, DNL-type), IPR024158 (Mitochondrial import protein TIM15)	GO:0008270 (zinc ion binding)
Niben101Scf04776g01006.1	sp|Q4IEV5|REXO4_GIBZE	*-*-	RNA exonuclease 4	IPR012337 (Ribonuclease H-like domain), IPR015880 (Zinc finger, C2H2-like)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01181g00019.1	sp|Q8SRB0|GBLP_ENCCU	****	Guanine nucleotide-binding protein subunit beta-like protein	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf04090g00001.1			Unknown protein		
Niben101Scf03706g02013.1	sp|Q9LUQ6|RL192_ARATH	***-	60S ribosomal protein L19-2	IPR000196 (Ribosomal protein L19/L19e domain), IPR023638 (Ribosomal protein L19/L19e conserved site), IPR027547 (Ribosomal protein L19/L19e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10083g00002.1	ref|XP_007047765.1|	*-*-	Transcription initiation factor TFIID subunit 8, putative isoform 3 [Theobroma cacao] gb|EOX91922.1| Transcription initiation factor TFIID subunit 8, putative isoform 3 [Theobroma cacao]		
Niben101Scf08341g05017.1	sp|Q9SV13|SUT31_ARATH	****	Sulfate transporter 3.1	IPR001902 (Sulphate anion transporter), IPR030402 (Sulfate transporter N-terminal domain with GLY motif)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport), GO:1902358 (sulfate transmembrane transport)
Niben101Scf01469g02007.1	ref|XP_007047216.1|	***-	C-terminal LisH motif isoform 1 [Theobroma cacao] gb|EOX91373.1| C-terminal LisH motif isoform 1 [Theobroma cacao]	IPR006595 (CTLH, C-terminal LisH motif), IPR024964 (CTLH/CRA C-terminal to LisH motif domain)	
Niben101Scf02979g03004.1	sp|B0UTU8|SYN_HISS2	*-**	Asparagine--tRNA ligase	IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004816 (asparagine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006421 (asparaginyl-tRNA aminoacylation)
Niben101Scf04233g01015.1	sp|Q96B97|SH3K1_HUMAN	--**	SH3 domain-containing kinase-binding protein 1	IPR001452 (SH3 domain)	GO:0005515 (protein binding)
Niben101Scf12366g00001.1	sp|Q9SR97|YIPL1_ARATH	***-	Protein yippee-like		
Niben101Scf02929g04027.1	ref|XP_002529235.1|	--*-	conserved hypothetical protein [Ricinus communis] ref|XP_002536627.1| conserved hypothetical protein [Ricinus communis] gb|EEF25757.1| conserved hypothetical protein [Ricinus communis] gb|EEF33148.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf27305g00006.1	sp|P52427|PSA4_SPIOL	****	Proteasome subunit alpha type-4	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf05414g02016.1	AT1G69200.1	***-	fructokinase-like 2 LENGTH=616	IPR029056 (Ribokinase-like)	
Niben101Scf04907g02001.1	sp|O80959|PLP6_ARATH	***-	Patatin-like protein 6	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf04500g04011.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06637g00021.1	gb|AGW82787.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia radula]		
Niben101Scf02293g00013.1	gb|ACN85272.1|	****	calcium ion binding protein [Oryza alta]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03389g00020.1	AT1G50820.1	*-*-	Aminotransferase-like, plant mobile domain family protein LENGTH=528	IPR006904 (Protein of unknown function DUF716 (TMEM45)), IPR019557 (Aminotransferase-like, plant mobile domain)	
Niben101Scf04628g00002.1	AT5G63890.2	****	histidinol dehydrogenase LENGTH=466	IPR012131 (Histidinol dehydrogenase), IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0000105 (histidine biosynthetic process), GO:0004399 (histidinol dehydrogenase activity), GO:0008152 (metabolic process), GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf14320g00011.1	sp|Q67A25|NCS_THLFG	--*-	S-norcoclaurine synthase	IPR023393 (START-like domain)	
Niben101Scf00953g07005.1	emb|CDX71277.1|	*-*-	BnaC07g05560D [Brassica napus]		
Niben101Scf05923g03011.1	sp|O82804|ELF3_ARATH	***-	Protein EARLY FLOWERING 3		
Niben101Ctg13400g00003.1	AT4G15840.1	*-*-	BTB/POZ domain-containing protein LENGTH=836		
Niben101Scf09116g04010.1	AT1G03920.1	****	Protein kinase family protein LENGTH=569	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04777g04010.1	AT1G09890.1	*-*-	Rhamnogalacturonate lyase family protein LENGTH=617	IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0030246 (carbohydrate binding)
Niben101Scf06721g00011.1	AT5G58080.1	*-*-	response regulator 18 LENGTH=618	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07825g02003.1	AT5G12470.1	***-	Protein of unknown function (DUF3411) LENGTH=386	IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf00143g01001.1	AT1G10280.1	*-**	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=412	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf03224g07001.1	sp|P21616|AVP_VIGRR	****	Pyrophosphate-energized vacuolar membrane proton pump	IPR004131 (Pyrophosphate-energised proton pump)	GO:0004427 (inorganic diphosphatase activity), GO:0009678 (hydrogen-translocating pyrophosphatase activity), GO:0015992 (proton transport), GO:0016020 (membrane)
Niben101Scf08285g00021.1	ref|XP_010087329.1|	****	WD repeat and HMG-box DNA-binding protein 1 [Morus notabilis] gb|EXB28903.1| WD repeat and HMG-box DNA-binding protein 1 [Morus notabilis]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR022100 (Protein of unknown function DUF3639)	GO:0005515 (protein binding)
Niben101Scf01531g03007.1	ref|NP_191672.1|	****	alpha-1,4-galacturon [Arabidopsis thaliana] emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gb|AHL38722.1| glycosyltransferase, partial [Arabidopsis thaliana]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf00087g10017.1	sp|Q9ZVX5|PP156_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf18348g01016.1	AT1G47740.1	***-	PPPDE putative thiol peptidase family protein LENGTH=279	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf19216g00006.1	sp|Q9LKW9|NHX7_ARATH	***-	Sodium/hydrogen exchanger 7	IPR006153 (Cation/H+ exchanger), IPR014710 (RmlC-like jelly roll fold), IPR018422 (Cation/H+ exchanger, CPA1 family)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf05278g00008.1	sp|P50165|TRNH_DATST	****	Tropinone reductase homolog	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01576g02006.1			Unknown protein		
Niben101Scf06698g00009.1	sp|P34102|PK3_DICDI	*-**	Protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08112g01003.1	sp|O04004|NLTP6_AMBAR	***-	Non-specific lipid-transfer protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf06560g02006.1	AT5G15780.1	*-*-	Pollen Ole e 1 allergen and extensin family protein LENGTH=401	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf01412g00017.1	sp|Q5ZJK8|TCPH_CHICK	*-**	T-complex protein 1 subunit eta	IPR002423 (Chaperonin Cpn60/TCP-1), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027409 (GroEL-like apical domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process), GO:0046872 (metal ion binding)
Niben101Scf03147g10001.1	sp|Q9ZW24|GSTU7_ARATH	*-*-	Glutathione S-transferase U7	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf07382g01010.1	sp|P93400|PLDA1_TOBAC	*-*-	Phospholipase D alpha 1	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf02984g01002.1	AT2G20990.3	***-	synaptotagmin A LENGTH=579	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf06968g00005.1	sp|Q66HG1|DMTF1_RAT	*-**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00630g05015.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01188g00028.1	dbj|BAD38193.1|	*-**	mitochondrial transcription termination factor-like [Oryza sativa Japonica Group]	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf26296g00002.1	sp|Q84UU9|TPS06_ARATH	*-**	Terpenoid synthase 6	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf04950g04021.1	gb|KEH28533.1|	*-*-	ubiquitin-specific protease family C19 protein [Medicago truncatula]		
Niben101Scf07275g00004.1	sp|Q71V09|H4_CAPAN	***-	Histone H4	IPR001951 (Histone H4), IPR009072 (Histone-fold)	
Niben101Scf04146g01009.1	sp|A8FMW6|DNAJ_CAMJ8	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf03764g02002.1			Unknown protein		
Niben101Scf14482g00005.1			Unknown protein		
Niben101Scf06117g00001.1	gb|AIU50013.1|	***-	tunicamycin induced 1, partial [Medicago truncatula]		
Niben101Scf01022g02008.1	gb|AFI47463.1|	****	invertase inhibitor [Solanum tuberosum]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf03979g01011.1	sp|C0RF62|ACSA_BRUMB	****	Acetyl-coenzyme A synthetase	IPR011904 (Acetate-CoA ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0003987 (acetate-CoA ligase activity), GO:0008152 (metabolic process), GO:0016208 (AMP binding), GO:0019427 (acetyl-CoA biosynthetic process from acetate)
Niben101Scf12994g00010.1	AT3G18490.1	***-	Eukaryotic aspartyl protease family protein LENGTH=500	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf08168g00003.1			Unknown protein		
Niben101Scf04632g09003.1	sp|P22292|M2OM_BOVIN	--*-	Mitochondrial 2-oxoglutarate/malate carrier protein	IPR023395 (Mitochondrial carrier domain)	
Niben101Scf02869g03010.1	sp|M1BYJ7|ENDB1_SOLTU	****	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial	IPR011992 (EF-hand domain pair), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0005509 (calcium ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01220g03013.1	sp|Q3TKR3|NAL4C_MOUSE	*-*-	NACHT, LRR and PYD domains-containing protein 4C	IPR001611 (Leucine-rich repeat), IPR003590 (Leucine-rich repeat, ribonuclease inhibitor subtype)	GO:0005515 (protein binding)
Niben101Scf01853g01010.1			Unknown protein		
Niben101Scf16254g00009.1			Unknown protein		
Niben101Scf00272g10015.1	sp|Q9ZVH4|CUL3A_ARATH	****	Cullin-3A	IPR001373 (Cullin, N-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf11161g01015.1	sp|Q6PGC1|DHX29_MOUSE	*-*-	ATP-dependent RNA helicase Dhx29		
Niben101Scf00151g07005.1	ref|XP_002523937.1|	****	hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gb|EEF38424.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02470g01007.1	sp|Q498C5|ABRAL_XENLA	***-	Costars family protein ABRACL	IPR027817 (Costars domain)	
Niben101Scf13005g02006.1	sp|P61871|LIP_RHINI	--*-	Lipase	IPR005592 (Mono-/di-acylglycerol lipase, N-terminal), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0016042 (lipid catabolic process)
Niben101Scf00063g04006.1	emb|CDY23069.1|	*-*-	BnaC07g31180D [Brassica napus]		
Niben101Scf02736g05005.1	sp|Q4VBD2|TAPT1_MOUSE	*-*-	Transmembrane anterior posterior transformation protein 1	IPR008010 (Membrane protein,Tapt1/CMV receptor)	
Niben101Scf09010g04003.1	AT1G75580.1	***-	SAUR-like auxin-responsive protein family LENGTH=108	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02852g01010.1	sp|Q9CAM8|PP100_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05310g01001.1	AT1G68140.1	***-	Protein of unknown function (DUF1644) LENGTH=334	IPR012866 (Protein of unknown function DUF1644), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf01017g01001.1	ref|WP_025887392.1|	*-*-	MULTISPECIES: hypothetical protein [Prochlorococcus]	IPR003425 (Uncharacterised protein family Ycf19)	GO:0016020 (membrane)
Niben101Scf00215g02009.1	AT5G65240.2	*-*-	Leucine-rich repeat protein kinase family protein LENGTH=640	IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf07244g02012.1	sp|Q38857|XTH22_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf01551g00005.1	sp|P26855|ATP9_MARPO	*-**	ATP synthase subunit 9, mitochondrial	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf05032g02010.1	emb|CDY31073.1|	*-*-	BnaA08g26230D [Brassica napus]		
Niben101Scf13870g00005.1	gb|AES92187.2|	*-*-	inter-alpha-trypsin inhibitor heavy chain-like protein [Medicago truncatula]		
Niben101Scf01834g04028.1	gb|ACG41571.1|	--*-	ATPase inhibitor [Zea mays]		
Niben101Scf15670g00003.1	ref|XP_002514143.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF48097.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08127g04002.1	sp|B4TMG8|AES_SALSV	*-*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf02151g01003.1	sp|A2YNI2|MAD18_ORYSI	*-*-	MADS-box transcription factor 18	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf05921g03002.1	sp|Q9SD82|RFA1B_ARATH	--*-	Replication protein A 70 kDa DNA-binding subunit B	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf02461g01005.1	AT3G12800.1	****	short-chain dehydrogenase-reductase B LENGTH=298	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf04436g04006.1	AT3G07310.1	***-	Protein of unknown function (DUF760) LENGTH=368	IPR008479 (Protein of unknown function DUF760)	
Niben101Scf02646g02005.1	sp|Q39017|DGK1_ARATH	****	Diacylglycerol kinase 1	IPR000756 (Diacylglycerol kinase, accessory domain), IPR001206 (Diacylglycerol kinase, catalytic domain), IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol-binding domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process), GO:0035556 (intracellular signal transduction)
Niben101Scf09596g00001.1	sp|Q58DS5|RAB13_BOVIN	***-	Ras-related protein Rab-13	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00747g05007.1	AT1G72510.1	***-	Protein of unknown function (DUF1677) LENGTH=165	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf01615g01011.1	emb|CAE03561.2|	--*-	OsJ_16109 [Oryza sativa Japonica Group]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf06506g02013.1	sp|P35685|RL7A_ORYSJ	***-	60S ribosomal protein L7a	IPR001921 (Ribosomal protein L7A/L8), IPR029064 (50S ribosomal protein L30e-like)	
Niben101Scf06183g01007.1	sp|Q9S7R3|LSH10_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	IPR006936 (ALOG domain)	
Niben101Scf05002g00001.1	AT2G31670.1	***-	Stress responsive alpha-beta barrel domain protein LENGTH=263	IPR011008 (Dimeric alpha-beta barrel)	
Niben101Scf08843g00018.1	emb|CDX73201.1|	***-	BnaC06g36490D [Brassica napus]		
Niben101Scf01463g02007.1	AT1G78930.1	*-*-	Mitochondrial transcription termination factor family protein LENGTH=591		
Niben101Ctg15964g00001.1	sp|Q9FJF4|MBD7_ARATH	--*-	Methyl-CpG-binding domain-containing protein 7		
Niben101Scf07160g00011.1	sp|Q9V5Z7|AQP_DROME	***-	Aquaporin	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00635g09009.1	sp|Q8KZP5|MHPC_COMTE	***-	2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03643g02040.1	sp|P51409|RM05_SOLTU	***-	60S ribosomal protein L5, mitochondrial	IPR022803 (Ribosomal protein L5 domain)	
Niben101Scf12330g02002.1	emb|CDY42537.1|	*-*-	BnaC08g10660D [Brassica napus]		
Niben101Scf04886g05009.1	gb|ACG43350.1|	***-	SLT1 protein [Zea mays]		
Niben101Scf11232g01016.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02937g09009.1	AT3G26570.1	****	phosphate transporter 2;1 LENGTH=613	IPR001204 (Phosphate transporter)	GO:0005315 (inorganic phosphate transmembrane transporter activity), GO:0006817 (phosphate ion transport), GO:0016020 (membrane)
Niben101Scf06256g03009.1	sp|Q0IH40|DNLZ_XENLA	*-**	DNL-type zinc finger protein	IPR007853 (Zinc finger, DNL-type), IPR024158 (Mitochondrial import protein TIM15)	GO:0008270 (zinc ion binding)
Niben101Scf09230g03001.1	sp|Q9ZQX4|VATF_ARATH	****	V-type proton ATPase subunit F	IPR008218 (ATPase, V1 complex, subunit F)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033180 (proton-transporting V-type ATPase, V1 domain), GO:0034220 (ion transmembrane transport), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf00592g09008.1	sp|Q69ZU8|ANKR6_MOUSE	*-*-	Ankyrin repeat domain-containing protein 6	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf00439g04016.1	sp|Q9H825|METL8_HUMAN	*-*-	Methyltransferase-like protein 8	IPR026113 (Methyltransferase-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf01663g00003.1	AT5G36740.1	*-**	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein LENGTH=1179	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016181 (Acyl-CoA N-acyltransferase)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01834g04004.1	sp|P35614|ERF1Z_ARATH	****	Eukaryotic peptide chain release factor subunit 1-3	IPR004403 (Peptide chain release factor eRF1/aRF1), IPR029064 (50S ribosomal protein L30e-like)	GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf04625g00004.1	gb|AES96134.2|	***-	carboxyl-terminal peptidase [Medicago truncatula]	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf07395g00010.1			Unknown protein		
Niben101Scf01006g02014.1	ref|XP_007039048.1|	--**	Calcium-binding EF-hand family protein [Theobroma cacao] gb|EOY23549.1| Calcium-binding EF-hand family protein [Theobroma cacao]	IPR015757 (Calcineurin B protein)	GO:0005509 (calcium ion binding)
Niben101Scf05883g01008.1	AT1G49350.1	***-	pfkB-like carbohydrate kinase family protein LENGTH=378	IPR029056 (Ribokinase-like)	
Niben101Scf03817g12030.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02565g00003.1	sp|Q93ZR6|WSD1_ARATH	*-**	O-acyltransferase WSD1	IPR004255 (O-acyltransferase, WSD1, N-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity), GO:0045017 (glycerolipid biosynthetic process)
Niben101Scf10524g04001.1	sp|O23429|VA724_ARATH	****	Vesicle-associated membrane protein 724	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf00133g04002.1	AT5G05470.1	*-*-	eukaryotic translation initiation factor 2 alpha subunit LENGTH=344	IPR024055 (Translation initiation factor 2, alpha subunit, C-terminal)	
Niben101Scf11790g01008.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03686g01008.1	sp|B4JUE4|PURA_DROGR	****	Adenylosuccinate synthetase	IPR001114 (Adenylosuccinate synthetase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004019 (adenylosuccinate synthase activity), GO:0005525 (GTP binding), GO:0006164 (purine nucleotide biosynthetic process)
Niben101Scf20000g00005.1	sp|Q53B90|RAB43_RAT	--*-	Ras-related protein Rab-43	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00182g00001.1	sp|Q9M1K1|ORG2_ARATH	***-	Transcription factor ORG2	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03114g06003.1	AT5G52570.1	***-	beta-carotene hydroxylase 2 LENGTH=303	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00773g10001.1			Unknown protein		
Niben101Scf01942g00001.1	sp|Q07761|RL23A_TOBAC	***-	60S ribosomal protein L23a	IPR005633 (Ribosomal protein L23/L25, N-terminal), IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00305g05025.1	ref|XP_002879480.1|	*-**	nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH55739.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Scf03854g03012.1			Unknown protein		
Niben101Scf08228g01002.1	sp|O22446|HDA19_ARATH	****	Histone deacetylase 19	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	GO:0004407 (histone deacetylase activity), GO:0016575 (histone deacetylation)
Niben101Scf06058g00014.1	sp|Q9LHA4|VA0D2_ARATH	*-**	V-type proton ATPase subunit d2	IPR002843 (ATPase, V0 complex,  c/d subunit)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf04347g00001.1	sp|Q39828|SDL5A_SOYBN	***-	Dynamin-related protein 5A	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf00234g02021.1	ref|XP_002315383.2|	*-**	an N-terminal calmodulin binding autoinhibitory domain-containing family protein [Populus trichocarpa] gb|EEF01554.2| an N-terminal calmodulin binding autoinhibitory domain-containing family protein [Populus trichocarpa]	IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR008250 (P-type ATPase, A  domain), IPR024750 (Calcium-transporting P-type ATPase, N-terminal autoinhibitory domain)	GO:0000166 (nucleotide binding), GO:0005516 (calmodulin binding), GO:0046872 (metal ion binding)
Niben101Scf03116g01001.1			Unknown protein		
Niben101Scf00503g10005.1	AT2G46260.1	***-	BTB/POZ/Kelch-associated protein LENGTH=561	IPR001253 (Translation initiation factor 1A (eIF-1A)), IPR011333 (BTB/POZ fold), IPR011705 (BTB/Kelch-associated)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0006413 (translational initiation)
Niben101Scf03080g02004.1	AT1G49510.1	***-	embryo defective 1273 LENGTH=240		
Niben101Scf03885g03007.1	sp|P29677|MPPA_SOLTU	****	Mitochondrial-processing peptidase subunit alpha	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0046872 (metal ion binding)
Niben101Scf02929g06105.1	AT4G01810.1	*-*-	Sec23/Sec24 protein transport family protein LENGTH=880		
Niben101Scf11469g00015.1	sp|P03007|DPO3E_ECOLI	--*-	DNA polymerase III subunit epsilon	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf05437g05005.1	AT3G48280.1	*-*-	cytochrome P450, family 71, subfamily A, polypeptide 25 LENGTH=490	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01111g01007.1	sp|Q91RA4|LMBD2_REOVJ	--*-	Outer capsid protein lambda-2		
Niben101Scf03550g00019.1	AT2G01190.1	*-*-	Octicosapeptide/Phox/Bem1p family protein LENGTH=720	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf01182g01002.1	sp|Q9XEG7|RS3A_TORRU	***-	40S ribosomal protein S3a	IPR001593 (Ribosomal protein S3Ae)	
Niben101Scf05118g08005.1	sp|P36409|RAB2A_DICDI	*-*-	Ras-related protein Rab-2A	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf08447g01006.1	sp|Q38935|FK151_ARATH	--*-	Peptidyl-prolyl cis-trans isomerase FKBP15-1		
Niben101Scf03766g13006.1	sp|Q2KIG2|WDR5_BOVIN	***-	WD repeat-containing protein 5	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf13680g00006.1	ref|XP_007033568.1|	***-	Mitochondrial Rho GTPase 2 isoform 1 [Theobroma cacao] gb|EOY04494.1| Mitochondrial Rho GTPase 2 isoform 1 [Theobroma cacao]	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf03203g09007.1	sp|B3M070|PTER_DROAN	--*-	Phosphotriesterase-related protein		
Niben101Scf13387g00018.1	sp|Q9SJD4|LACS8_ARATH	*-*-	Long chain acyl-CoA synthetase 8	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf07896g01006.1	sp|O80340|ERF78_ARATH	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07778g00013.1	gb|KEH17204.1|	*-*-	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf04911g00004.1	sp|Q9LE73|NUDT4_ARATH	****	Nudix hydrolase 4	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf00714g01006.1	ref|XP_007009753.1|	*-*-	Nucleolar complex protein 2 isoform 1 [Theobroma cacao] ref|XP_007009755.1| Nucleolar complex protein 2 isoform 1 [Theobroma cacao] gb|EOY18563.1| Nucleolar complex protein 2 isoform 1 [Theobroma cacao] gb|EOY18565.1| Nucleolar complex protein 2 isoform 1 [Theobroma cacao]		
Niben101Scf00735g06037.1	emb|CDY06105.1|	*-*-	BnaA09g36750D [Brassica napus]		
Niben101Scf04019g02006.1	AT3G62920.1	***-	unknown protein; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=80		
Niben101Scf10316g03001.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf01633g00031.1	sp|Q6XHI1|THIO2_DROYA	*-*-	Thioredoxin-2	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf07417g01013.1	sp|Q2HJH0|LSM5_BOVIN	*-*-	U6 snRNA-associated Sm-like protein LSm5		
Niben101Scf03779g04001.1	sp|Q08508|ACCO4_PETHY	***-	1-aminocyclopropane-1-carboxylate oxidase 4	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03906g00003.1	gb|KEH20808.1|	***-	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]		
Niben101Scf00773g13004.1	ref|XP_007051750.1|	***-	Membrane lipoprotein, putative [Theobroma cacao] gb|EOX95907.1| Membrane lipoprotein, putative [Theobroma cacao]		
Niben101Scf02059g05003.1	sp|Q01740|FMO1_HUMAN	****	Dimethylaniline monooxygenase [N-oxide-forming] 1	IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00230g00004.1	sp|Q8BVG4|DPP9_MOUSE	****	Dipeptidyl peptidase 9	IPR002469 (Peptidase S9B, dipeptidylpeptidase IV N-terminal), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0016020 (membrane)
Niben101Scf04114g01042.1	sp|Q0BSK5|NUOD_GRABC	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00188g03009.1	sp|Q9ZTA1|AOP3C_ARATH	*-**	2-oxoglutarate-dependent dioxygenase AOP3	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00150g01001.1	ref|XP_007028518.1|	***-	Plant protein 1589 of Uncharacterized protein function isoform 4 [Theobroma cacao] gb|EOY09020.1| Plant protein 1589 of Uncharacterized protein function isoform 4 [Theobroma cacao]		
Niben101Scf06998g00015.1	sp|Q93134|GBLP_BIOGL	--**	Guanine nucleotide-binding protein subunit beta-2-like 1	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02399g01011.1	sp|Q92RJ1|DXS_RHIME	****	1-deoxy-D-xylulose-5-phosphate synthase	IPR005477 (Deoxyxylulose-5-phosphate synthase), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0008661 (1-deoxy-D-xylulose-5-phosphate synthase activity), GO:0016114 (terpenoid biosynthetic process)
Niben101Scf02380g01005.1	sp|P33906|DEAD_KLEPN	*-**	ATP-dependent RNA helicase DeaD	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR025313 (Domain of unknown function DUF4217), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf09004g02026.1	sp|O81062|SIP_ARATH	****	Signal peptide peptidase	IPR006639 (Presenilin/signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf01022g03036.1			Unknown protein		
Niben101Scf11757g03004.1	sp|Q8L9T5|ATL2_ARATH	--*-	RING-H2 finger protein ATL2		
Niben101Scf03188g00006.1	sp|Q9FGQ6|EB1C_ARATH	****	Microtubule-associated protein RP/EB family member 1C	IPR001715 (Calponin homology domain), IPR004953 (EB1, C-terminal), IPR027328 (Microtubule-associated protein RP/EB)	GO:0005515 (protein binding), GO:0008017 (microtubule binding)
Niben101Scf04053g01007.1	emb|CDY63745.1|	***-	BnaC05g07770D [Brassica napus]	IPR010410 (Protein of unknown function DUF1005)	
Niben101Scf00062g01027.1	sp|P28810|MMSA_PSEAE	*-**	Methylmalonate-semialdehyde dehydrogenase [acylating]	IPR010061 (Methylmalonate-semialdehyde dehydrogenase)	GO:0004491 (methylmalonate-semialdehyde dehydrogenase (acylating) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04473g02003.1	sp|Q96NC0|ZMAT2_HUMAN	****	Zinc finger matrin-type protein 2	IPR003604 (Zinc finger, U1-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf11649g01011.1	sp|Q8L783|CAX5_ARATH	****	Vacuolar cation/proton exchanger 5	IPR004798 (Calcium/proton exchanger CAX)	GO:0006816 (calcium ion transport), GO:0015369 (calcium:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf21699g00025.1	sp|Q6LQG2|RIHA_PHOPR	*-*-	Pyrimidine-specific ribonucleoside hydrolase RihA	IPR001910 (Inosine/uridine-preferring nucleoside hydrolase domain), IPR023186 (Inosine/uridine-preferring nucleoside hydrolase)	
Niben101Scf14436g00009.1	sp|O80647|PP195_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03108g07001.1	sp|B2S9T6|DXS_BRUA1	****	1-deoxy-D-xylulose-5-phosphate synthase	IPR005477 (Deoxyxylulose-5-phosphate synthase), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0008661 (1-deoxy-D-xylulose-5-phosphate synthase activity), GO:0016114 (terpenoid biosynthetic process)
Niben101Scf06684g02010.1	sp|Q9LTD8|Y5279_ARATH	*-*-	DUF21 domain-containing protein		
Niben101Scf03952g01001.1	sp|A1CTZ2|DBP4_ASPCL	*-**	ATP-dependent RNA helicase dbp4	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf07783g01018.1	sp|Q10M00|C3H22_ORYSJ	***-	Zinc finger CCCH domain-containing protein 22	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf10101g00017.1	sp|Q39097|ERF1X_ARATH	*-**	Eukaryotic peptide chain release factor subunit 1-1	IPR004403 (Peptide chain release factor eRF1/aRF1)	GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf19584g00016.1	sp|Q9FRI5|PPR57_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03413g02028.1	sp|B2RYJ4|ADPPT_RAT	***-	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	IPR008278 (4'-phosphopantetheinyl transferase superfamily)	GO:0000287 (magnesium ion binding), GO:0008897 (holo-[acyl-carrier-protein] synthase activity), GO:0009059 (macromolecule biosynthetic process)
Niben101Scf03282g03002.1	sp|Q5S1U6|IFRD1_PIG	***-	Interferon-related developmental regulator 1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf04703g00002.1	sp|O22151|GOS12_ARATH	****	Golgi SNAP receptor complex member 1-2	IPR023601 (Golgi SNAP receptor complex, subunit 1)	GO:0000139 (Golgi membrane), GO:0005801 (cis-Golgi network), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0016021 (integral component of membrane)
Niben101Scf04988g02021.1	ref|WP_031151667.1|	*-**	ATP-binding protein [Streptomyces erythrochromogenes]	IPR000157 (Toll/interleukin-1 receptor homology (TIR) domain), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0043531 (ADP binding)
Niben101Scf01249g03026.1	AT3G17780.1	****	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf13823g02004.1	AT5G63140.1	***-	purple acid phosphatase 29 LENGTH=389	IPR011230 (Phosphoesterase At2g46880), IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf10388g02004.1	sp|A7FDT6|AAEB_YERP3	--*-	p-hydroxybenzoic acid efflux pump subunit AaeB	IPR006726 (Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein)	GO:0005886 (plasma membrane), GO:0006810 (transport)
Niben101Scf00103g04001.1	AT3G51620.2	***-	PAP/OAS1 substrate-binding domain superfamily LENGTH=829		
Niben101Scf03777g00002.1	sp|Q39817|CALX_SOYBN	***-	Calnexin homolog	IPR001580 (Calreticulin/calnexin), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005783 (endoplasmic reticulum), GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf03934g04014.1	sp|Q570C0|TIR1_ARATH	--*-	Protein TRANSPORT INHIBITOR RESPONSE 1		
Niben101Scf02798g00052.1			Unknown protein		
Niben101Scf05175g02005.1	sp|Q9S7Y1|BH030_ARATH	***-	Transcription factor bHLH30	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03223g02002.1	sp|F4HT49|PABP1_ARATH	****	Polyadenylate-binding protein 1	IPR006515 (Polyadenylate binding protein, human types 1, 2, 3, 4), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf04464g03006.1	ref|NP_001041883.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf14935g00003.1	sp|Q8RW96|2A5G_ARATH	*-**	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform	IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)	GO:0000159 (protein phosphatase type 2A complex), GO:0005488 (binding), GO:0007165 (signal transduction), GO:0008601 (protein phosphatase type 2A regulator activity)
Niben101Scf04446g00004.1	sp|A2YS06|ATG8C_ORYSI	***-	Autophagy-related protein 8C	IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain)	
Niben101Scf08718g00004.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf15120g00010.1	ref|XP_002511236.1|	--*-	conserved hypothetical protein [Ricinus communis] ref|XP_002511239.1| conserved hypothetical protein [Ricinus communis] gb|EEF51838.1| conserved hypothetical protein [Ricinus communis] gb|EEF51841.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf19733g00001.1	sp|Q6K7E6|ERF1_ORYSJ	****	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07103g01021.1	sp|Q0G9V4|RBL_DAUCA	****	Ribulose bisphosphate carboxylase large chain	IPR000685 (Ribulose bisphosphate carboxylase, large subunit, C-terminal), IPR017443 (Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal)	GO:0000287 (magnesium ion binding), GO:0015977 (carbon fixation), GO:0016984 (ribulose-bisphosphate carboxylase activity)
Niben101Scf10528g03001.1			Unknown protein		
Niben101Scf05402g02004.1	sp|Q8GZA8|ULT1_ARATH	***-	Protein ULTRAPETALA 1	IPR010919 (SAND domain-like)	GO:0003677 (DNA binding)
Niben101Scf02169g00001.1	sp|O93988|ACL1_SORMK	*-*-	ATP-citrate synthase subunit 1	IPR016040 (NAD(P)-binding domain), IPR016102 (Succinyl-CoA synthetase-like), IPR016141 (Citrate synthase-like, core)	GO:0044262 (cellular carbohydrate metabolic process), GO:0046912 (transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer)
Niben101Scf00631g01005.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf08457g00004.1	sp|Q3J8A0|GPH_NITOC	***-	Phosphoglycolate phosphatase	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf04671g01011.1	sp|Q10FZ7|YAB2_ORYSJ	***-	Protein YABBY 2	IPR006780 (YABBY protein)	
Niben101Scf11341g00010.1	AT1G74030.1	***-	enolase 1 LENGTH=477	IPR000941 (Enolase), IPR029017 (Enolase N-terminal domain-like), IPR029065 (Enolase C-terminal domain-like)	GO:0000015 (phosphopyruvate hydratase complex), GO:0000287 (magnesium ion binding), GO:0004634 (phosphopyruvate hydratase activity), GO:0006096 (glycolytic process)
Niben101Scf04652g00002.1	sp|Q9LZG0|ADK2_ARATH	****	Adenosine kinase 2	IPR001805 (Adenosine kinase), IPR029056 (Ribokinase-like)	GO:0004001 (adenosine kinase activity), GO:0006166 (purine ribonucleoside salvage), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf01285g02013.1	sp|Q5R4L5|XRN2_PONAB	--*-	5'-3' exoribonuclease 2	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf07913g00007.1	ref|XP_003615104.1|	*-*-	Receptor protein kinase-like protein [Medicago truncatula]		
Niben101Scf00446g02011.1	gb|KEH16365.1|	--*-	mitovirus RNA-dependent RNA polymerase [Medicago truncatula]	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf06183g04008.1	sp|Q9SIN2|TBL39_ARATH	***-	Protein trichome birefringence-like 39	IPR026057 (PC-Esterase)	
Niben101Scf07440g02018.1	sp|Q9FGY4|FB341_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf02864g01021.1	sp|Q2MIG6|RK33_SOLBU	*-*-	50S ribosomal protein L33, chloroplastic		
Niben101Scf01124g05003.1	gb|KEH43621.1|	***-	transmembrane protein, putative [Medicago truncatula]	IPR009943 (Protein of unknown function DUF1475)	
Niben101Scf02249g05012.1	sp|Q5AQ33|HSF_CANAL	--**	Heat shock transcription factor	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02510g05028.1	sp|O22929|BL1S1_ARATH	***-	Biogenesis of lysosome-related organelles complex 1 subunit 1	IPR009395 (GCN5-like 1)	
Niben101Scf02789g00003.1			Unknown protein		
Niben101Scf02181g00016.1	sp|Q9DBL7|COASY_MOUSE	--*-	Bifunctional coenzyme A synthase		
Niben101Ctg11075g00004.1	sp|A1URA3|FTSH_BARBK	*-**	ATP-dependent zinc metalloprotease FtsH	IPR000642 (Peptidase M41), IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis)
Niben101Scf02289g09001.1	AT3G29400.1	****	exocyst subunit exo70 family protein E1 LENGTH=658	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf03918g00031.1	gb|AES82375.2|	*-*-	meiotically up-regulated protein 71-like protein [Medicago truncatula]		
Niben101Scf01853g00001.1	ref|NP_180182.2|	****	RING/U-box protein with C6HC-type zinc finger [Arabidopsis thaliana] gb|AEC07797.1| RING/U-box protein with C6HC-type zinc finger [Arabidopsis thaliana]	IPR002867 (Zinc finger, C6HC-type), IPR012337 (Ribonuclease H-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02237g02004.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf13833g02002.1	sp|Q9LTJ1|MBD6_ARATH	--**	Methyl-CpG-binding domain-containing protein 6	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf04126g01011.1	sp|P40918|HSP70_DAVTA	*-*-	Heat shock 70 kDa protein	IPR008218 (ATPase, V1 complex, subunit F), IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain)	GO:0034220 (ion transmembrane transport)
Niben101Ctg15114g00004.1	AT4G34980.1	****	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06957g00010.1	sp|O82485|OPT7_ARATH	***-	Oligopeptide transporter 7	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf03277g01004.1	gb|KEH42351.1|	***-	DNA-binding protein, putative [Medicago truncatula]		
Niben101Scf01191g06018.1	sp|Q86AV5|MCFX_DICDI	***-	Mitochondrial substrate carrier family protein X	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf05044g01004.1	sp|Q5R4Y2|RANB3_PONAB	*-**	Ran-binding protein 3	IPR011993 (Pleckstrin homology-like domain), IPR015007 (Nuclear pore complex, NUP2/50/61)	GO:0005643 (nuclear pore), GO:0046907 (intracellular transport)
Niben101Scf00324g01013.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf04240g03003.1	AT1G61870.1	***-	pentatricopeptide repeat 336 LENGTH=408	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf11019g01007.1	AT4G32605.1	****	Mitochondrial glycoprotein family protein LENGTH=227	IPR003428 (Mitochondrial glycoprotein)	GO:0005759 (mitochondrial matrix)
Niben101Scf05294g00006.1	sp|Q5SWK7|RN145_MOUSE	*-*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00428g12016.1	gb|AAF14244.1|AF110228_1	***-	nuclear RNA binding protein A [Spinacia oleracea]	IPR006861 (Hyaluronan/mRNA-binding protein), IPR019084 (Stm1, N-terminal)	
Niben101Ctg15242g00003.1	AT4G21750.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=762	IPR002913 (START domain)	GO:0008289 (lipid binding)
Niben101Scf03147g06004.1	AT2G07750.1	*-*-	DEA(D/H)-box RNA helicase family protein LENGTH=845		
Niben101Scf10328g00023.1	AT4G38040.1	***-	Exostosin family protein LENGTH=425	IPR004263 (Exostosin-like)	
Niben101Scf03497g10002.1	sp|Q9FXJ1|GDL6_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf03064g02003.1			Unknown protein		
Niben101Scf09512g00004.1	AT2G46140.1	***-	Late embryogenesis abundant protein LENGTH=166	IPR013783 (Immunoglobulin-like fold), IPR013990 (Water stress and hypersensitive response domain)	GO:0009269 (response to desiccation)
Niben101Scf02429g07020.1	sp|P0AET9|HDHA_ECO57	--*-	7-alpha-hydroxysteroid dehydrogenase		
Niben101Scf05396g07006.1	sp|Q76LC6|RBM24_DANRE	*-**	RNA-binding protein 24	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01683g03005.1	sp|B9SBU9|TPS5_RICCO	****	Terpene synthase 5	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf00674g03001.1	gb|AAP53948.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf05354g00007.1	AT2G17975.1	****	zinc finger (Ran-binding) family protein LENGTH=268	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf00635g00003.1	sp|D2TT52|YMDB_CITRI	*-*-	O-acetyl-ADP-ribose deacetylase	IPR001251 (CRAL-TRIO domain), IPR002589 (Macro domain)	
Niben101Scf09442g03003.1	AT2G17070.1	***-	Arabidopsis protein of unknown function (DUF241) LENGTH=263	IPR004320 (Protein of unknown function DUF241, plant)	
Niben101Scf11535g01028.1	sp|Q9C5S9|CRK6_ARATH	*-**	Cysteine-rich receptor-like protein kinase 6	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03979g02011.1	ref|NP_001058508.2|	*-*-	[Oryza sativa Japonica Group] dbj|BAF20422.2| [Oryza sativa Japonica Group]		
Niben101Scf02471g06008.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07227g00012.1	sp|A4FUD4|PEX12_BOVIN	*-**	Peroxisome assembly protein 12	IPR017375 (Peroxisome assembly protein 12)	GO:0005779 (integral component of peroxisomal membrane), GO:0006625 (protein targeting to peroxisome), GO:0008022 (protein C-terminus binding), GO:0008270 (zinc ion binding)
Niben101Scf07724g01002.1	sp|Q42662|METE_PLESU	--*-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase		
Niben101Scf03222g01003.1	AT2G34160.1	****	Alba DNA/RNA-binding protein LENGTH=130	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Scf02459g02011.1	sp|Q9LPI7|NAC12_ARATH	*-*-	NAC domain-containing protein 12	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05188g01019.1	AT5G23370.1	***-	GRAM domain-containing protein / ABA-responsive protein-related LENGTH=219	IPR004182 (GRAM domain)	
Niben101Scf01818g09007.1	sp|Q1E3S4|FES1_COCIM	*-*-	Hsp70 nucleotide exchange factor FES1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf10999g00011.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02908g02011.1	sp|Q2NF88|VATB_METST	****	V-type ATP synthase beta chain	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf11531g01004.1	sp|Q8Y6K9|MEND_LISMO	*-*-	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase	IPR010196 (O-succinylbenzoic acid (OSB) synthetase), IPR011766 (Thiamine pyrophosphate enzyme, C-terminal TPP-binding), IPR013342 (Mandelate racemase/muconate lactonizing enzyme, C-terminal), IPR029017 (Enolase N-terminal domain-like), IPR029035 (DHS-like NAD/FAD-binding domain), IPR029058 (Alpha/Beta hydrolase fold), IPR029061 (Thiamin diphosphate-binding fold), IPR029065 (Enolase C-terminal domain-like)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0009063 (cellular amino acid catabolic process), GO:0009234 (menaquinone biosynthetic process), GO:0016836 (hydro-lyase activity), GO:0030976 (thiamine pyrophosphate binding)
Niben101Scf05017g07011.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02755g00002.1	gb|AGY62799.1|	*-*-	orf148 (mitochondrion) [Eruca vesicaria subsp. sativa] gb|AHY20342.1| hypothetical protein (mitochondrion) (mitochondrion) [Brassica juncea var. tumida] gb|AIC83308.1| orf148 (mitochondrion) [Brassica oleracea var. botrytis]		
Niben101Scf01718g08014.1	sp|Q9FKS4|ATR_ARATH	*-*-	Serine/threonine-protein kinase ATR	IPR014009 (PIK-related kinase)	
Niben101Scf03979g02010.1	sp|P22180|PMA1_SOLLC	****	Plasma membrane ATPase 1	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane)
Niben101Scf02180g00002.1			Unknown protein		
Niben101Scf01535g00008.1	AT5G55850.2	*-*-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=130	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf00366g00008.1	sp|Q6YZE8|SPL16_ORYSJ	*-**	Squamosa promoter-binding-like protein 16	IPR004333 (Transcription factor, SBP-box)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf08973g00013.1	sp|Q14498|RBM39_HUMAN	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04477g04017.1	sp|Q8BWQ6|CP062_MOUSE	***-	UPF0505 protein C16orf62 homolog	IPR005378 (Vacuolar protein sorting-associated protein 35, Vps35), IPR029705 (UPF0505 family)	GO:0015031 (protein transport), GO:0030904 (retromer complex), GO:0042147 (retrograde transport, endosome to Golgi)
Niben101Scf08751g00010.1			Unknown protein		
Niben101Scf12084g01001.1	sp|P35283|RAB12_MOUSE	*-*-	Ras-related protein Rab-12	IPR001806 (Small GTPase superfamily), IPR025662 (Sigma-54 interaction domain, ATP-binding site 1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf00597g01003.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf01616g07011.1	sp|A8JUV0|SBNO_DROME	*-*-	Protein strawberry notch	IPR026741 (Protein strawberry notch)	GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01911g00002.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf01486g04014.1	AT4G38520.1	****	Protein phosphatase 2C family protein LENGTH=400	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf06345g03019.1			Unknown protein		
Niben101Scf17513g00002.1	AT1G12500.1	***-	Nucleotide-sugar transporter family protein LENGTH=361	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf08895g01019.1	sp|Q5U5Q3|MEX3C_HUMAN	--**	RNA-binding E3 ubiquitin-protein ligase MEX3C	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06646g00002.1	AT4G37790.1	*-*-	Homeobox-leucine zipper protein family LENGTH=278	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00750g00005.1	sp|Q03199|IPIB_TOBAC	****	Proteinase inhibitor I-B	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding)
Niben101Ctg12507g00001.1	sp|Q9M9G6|CTF64_ARATH	--*-	Cleavage stimulating factor 64	IPR025742 (Cleavage stimulation factor subunit 2, hinge domain)	
Niben101Scf00240g02004.1	AT1G17280.1	***-	ubiquitin-conjugating enzyme 34 LENGTH=237	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf04126g01012.1	sp|Q7S7Z6|PPIB_NEUCR	****	Peptidyl-prolyl cis-trans isomerase B	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf05841g01023.1	sp|Q5C9Z4|NOM1_HUMAN	*-*-	Nucleolar MIF4G domain-containing protein 1	IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02791g01001.1	sp|Q4UB16|RAB1_THEAN	***-	Ras-related protein Rab-1	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02583g06018.1	sp|P83332|TLP1_PRUPE	***-	Thaumatin-like protein 1	IPR001938 (Thaumatin)	
Niben101Scf04021g05004.1	ref|NP_004308.2|	****	ATPase ASNA1 [Homo sapiens] ref|NP_001092334.1| ATPase ASNA1 [B product [Homo sapiens] tpg|DAA28025.1| TPA: arsA arsenite transporter, ATP-binding, homolog 1 [Bos taurus] gb|ADZ15365.1| arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) [synthetic construct] gb|EHH29684.1| ATPase ASNA1 [Macaca mulatta] gb|EHH59253.1| ATPase ASNA1 [Macaca fascicularis] gb|ELK06712.1| ATPase ASNA1 [Pteropus alecto] gb|ELR52911.1| ATPase ASNA1 [Bos mutus] gb|AHJ25817.1| arsa arsenite transporter ATP-binding [Panthera tigris altaica] gb|AIC48309.1| ASNA1, partial [synthetic construct]	IPR016300 (Arsenical pump ATPase, ArsA/GET3), IPR025723 (Anion-transporting ATPase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf11036g00002.1	sp|Q9FYE2|PKS4_ARATH	*-*-	Protein PHYTOCHROME KINASE SUBSTRATE 4		
Niben101Scf00715g01001.1	sp|P60040|RL72_ARATH	***-	60S ribosomal protein L7-2	IPR005998 (Ribosomal protein L7, eukaryotic)	
Niben101Scf05837g06001.1	sp|P43509|CPR5_CAEEL	--**	Cathepsin B-like cysteine proteinase 5	IPR013128 (Peptidase C1A)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00691g03010.1	AT5G58005.1	****	Cytochrome c oxidase, subunit Vib family protein LENGTH=116	IPR003213 (Cytochrome c oxidase, subunit VIb)	GO:0004129 (cytochrome-c oxidase activity), GO:0005739 (mitochondrion)
Niben101Scf17046g00005.1	AT3G14830.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=476		
Niben101Scf07728g00002.1	sp|Q9ATF5|RL18A_CASSA	***-	60S ribosomal protein L18a	IPR023573 (Ribosomal protein L18a/LX), IPR028877 (50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02182g01013.1	sp|P08054|HBP1_CASGL	***-	Hemoglobin-1	IPR000971 (Globin), IPR009050 (Globin-like)	GO:0005506 (iron ion binding), GO:0015671 (oxygen transport), GO:0019825 (oxygen binding), GO:0020037 (heme binding)
Niben101Scf03203g02008.1	sp|Q8LPL5|FZR3_ARATH	*-*-	Protein FIZZY-RELATED 3		
Niben101Scf05582g04020.1	sp|P46690|GASA4_ARATH	***-	Gibberellin-regulated protein 4	IPR003854 (Gibberellin regulated protein)	
Niben101Scf02354g04004.1	sp|Q6LV48|RL27_PHOPR	***-	50S ribosomal protein L27	IPR001684 (Ribosomal protein L27)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01694g12002.1	sp|B0Y384|GMT_ASPFC	***-	GDP-mannose transporter	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf06966g02010.1	sp|Q05B17|WDR48_XENTR	*-*-	WD repeat-containing protein 48	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf02279g07010.1	sp|Q94BZ1|ZIFL1_ARATH	*-*-	Protein ZINC INDUCED FACILITATOR-LIKE 1		
Niben101Scf01375g02014.1	sp|Q9SUT9|RTNLB_ARATH	***-	Reticulon-like protein B2	IPR003388 (Reticulon)	
Niben101Scf03459g01009.1			Unknown protein		
Niben101Scf04804g02002.1	sp|Q7PCJ8|SAT2_BOVIN	****	Diamine acetyltransferase 2	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf00332g05012.1	sp|O45379|ARL3_CAEEL	***-	ADP-ribosylation factor-like protein 3	IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf04083g02008.1	gb|AET78878.1|	--*-	At2g46550-like protein [Arabidopsis halleri]		
Niben101Scf03626g01003.1	sp|P18694|HSP72_USTMA	*-*-	Heat shock 70 kDa protein 2	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain)	
Niben101Scf01761g03005.1	emb|CDY13694.1|	***-	BnaA06g32290D [Brassica napus]		
Niben101Scf05668g01001.1	ref|XP_002872071.1|	****	nucleotide binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH48330.1| nucleotide binding protein [Arabidopsis lyrata subsp. lyrata]	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01993g04002.1	sp|B9MPK5|FTSH_CALBD	--*-	ATP-dependent zinc metalloprotease FtsH		
Niben101Scf23606g00004.1	sp|A6MFK9|CRVP_DEMVE	***-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	GO:0005576 (extracellular region)
Niben101Scf13231g01003.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf07202g00004.1	ref|XP_002512211.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF50245.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00426g02029.1	sp|B6IN76|ACP_RHOCS	***-	Acyl carrier protein	IPR003231 (Acyl carrier protein (ACP)), IPR009081 (Acyl carrier protein-like)	GO:0006633 (fatty acid biosynthetic process)
Niben101Scf04944g00017.1	sp|A5FMP6|KMO_FLAJ1	*-*-	Kynurenine 3-monooxygenase	IPR003042 (Aromatic-ring hydroxylase-like)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf09885g01016.1	AT1G60060.1	***-	Serine/threonine-protein kinase WNK (With No Lysine)-related LENGTH=386	IPR025610 (Transcription factor MYC/MYB N-terminal)	
Niben101Scf07244g00009.1	gb|ADL16975.1|	--*-	At1g06530-like protein [Arabidopsis lyrata subsp. lyrata] gb|ADL16981.1| At1g06530-like protein [Arabidopsis lyrata subsp. lyrata]		
Niben101Scf06162g00026.1	sp|Q9FQ19|SCC13_ARATH	***-	Sister chromatid cohesion 1 protein 3	IPR006910 (Rad21/Rec8-like protein, N-terminal), IPR023093 (Rad21/Rec8-like protein, C-terminal)	GO:0000228 (nuclear chromosome), GO:0005515 (protein binding)
Niben101Scf05822g03005.1	sp|Q6Z9F4|CIPK6_ORYSJ	****	CBL-interacting protein kinase 6	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00906g00015.1	sp|Q64550|UD11_RAT	*-*-	UDP-glucuronosyltransferase 1-1	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04852g01008.1	AT5G53010.1	****	calcium-transporting ATPase, putative LENGTH=1049	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain), IPR024750 (Calcium-transporting P-type ATPase, N-terminal autoinhibitory domain)	GO:0000166 (nucleotide binding), GO:0005388 (calcium-transporting ATPase activity), GO:0005516 (calmodulin binding), GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding), GO:0070588 (calcium ion transmembrane transport)
Niben101Scf04988g02020.1	AT3G61850.4	****	Dof-type zinc finger DNA-binding family protein LENGTH=324	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01123g01012.1	AT4G13970.1	****	zinc ion binding LENGTH=778	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf11264g01017.1	AT3G02645.1	***-	Plant protein of unknown function (DUF247) LENGTH=529	IPR004158 (Protein of unknown function DUF247, plant)	
Niben101Scf06359g00001.1	gb|AES78094.2|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf03469g01004.1	sp|F4JIF5|TCX2_ARATH	***-	Protein tesmin/TSO1-like CXC 2	IPR005172 (CRC domain), IPR028307 (Lin-54 family)	
Niben101Scf15263g00002.1	sp|Q8CDN9|LRRC9_MOUSE	*-*-	Leucine-rich repeat-containing protein 9	IPR001611 (Leucine-rich repeat), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf00520g07001.1	sp|O65390|APA1_ARATH	*-**	Aspartic proteinase A1	IPR001461 (Aspartic peptidase), IPR008373 (Saposin), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0005764 (lysosome), GO:0006508 (proteolysis), GO:0006629 (lipid metabolic process), GO:0006665 (sphingolipid metabolic process)
Niben101Scf03795g01002.1	sp|Q9BWF3|RBM4_HUMAN	*-**	RNA-binding protein 4	IPR007201 (RNA recognition motif 2), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07089g02023.1	sp|A5E0T7|ATG7_LODEL	--*-	Ubiquitin-like modifier-activating enzyme ATG7		
Niben101Scf36509g00001.1	AT2G21480.1	***-	Malectin/receptor-like protein kinase family protein LENGTH=871	IPR024788 (Malectin-like carbohydrate-binding domain)	
Niben101Scf08206g01022.1	sp|Q9LPI5|CID11_ARATH	****	Polyadenylate-binding protein-interacting protein 11	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02929g01008.1			Unknown protein		
Niben101Scf06972g00005.1			Unknown protein		
Niben101Scf03080g03001.1	sp|Q2YBK4|ARGC_NITMU	*-**	N-acetyl-gamma-glutamyl-phosphate reductase	IPR000534 (Semialdehyde dehydrogenase, NAD-binding), IPR016040 (NAD(P)-binding domain)	GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02006g01014.1	sp|Q8VYI9|NLTL5_ARATH	*-**	Non-specific lipid-transfer protein-like protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf03338g01021.1	sp|O35789|B3GA1_RAT	****	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1	IPR005027 (Glycosyl transferase, family 43), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0015018 (galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity), GO:0016020 (membrane)
Niben101Scf05230g03011.1	AT3G27470.1	***-	Protein of unknown function (DUF707) LENGTH=398	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf33179g00006.1	sp|A1L272|S29A4_DANRE	****	Equilibrative nucleoside transporter 4	IPR002259 (Equilibrative nucleoside transporter)	GO:0005337 (nucleoside transmembrane transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf00904g01001.1	sp|Q5SMI4|RL393_ORYSJ	***-	60S ribosomal protein L39-3	IPR000077 (Ribosomal protein L39e), IPR023626 (Ribosomal protein L39e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Ctg15991g00003.1	sp|Q0WNJ6|CLAH1_ARATH	*-*-	Clathrin heavy chain 1	IPR000547 (Clathrin, heavy chain/VPS, 7-fold repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport)
Niben101Scf17819g00005.1	sp|Q8L5T5|LBD15_ARATH	***-	LOB domain-containing protein 15	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf02816g16011.1	sp|Q84WU2|UBP13_ARATH	*-**	Ubiquitin carboxyl-terminal hydrolase 13	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf02937g01002.1			Unknown protein		
Niben101Scf05044g04022.1	ref|NP_001053188.1|	***-	product [Oryza sativa Japonica Group]	IPR006946 (Protein of unknown function DUF642)	
Niben101Scf05963g00029.1	gb|AET02817.2|	*-*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf05574g02012.1	AT2G39750.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=694	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf00381g07023.1	sp|P37202|DIS3_SCHPO	***-	Exosome complex exonuclease dis3	IPR012340 (Nucleic acid-binding, OB-fold), IPR022966 (Ribonuclease II/R, conserved site), IPR029060 (PIN domain-like)	
Niben101Scf13932g00001.1			Unknown protein		
Niben101Ctg05206g00001.1	sp|Q2GNZ6|XRN2_CHAGB	--*-	5'-3' exoribonuclease 2	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf03114g02002.1	gb|KEH21133.1|	****	heavy metal transport/detoxification superfamily protein [Medicago truncatula]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf04899g02017.1			Unknown protein		
Niben101Scf02363g00011.1	ref|XP_007024515.1|	--*-	Root hair defective 3 GTP-binding protein (RHD3) isoform 2 [Theobroma cacao] gb|EOY27137.1| Root hair defective 3 GTP-binding protein (RHD3) isoform 2 [Theobroma cacao]		
Niben101Scf00072g07008.1	AT3G24240.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf08351g04013.1	sp|Q8RGX7|FABH_FUSNN	*-*-	3-oxoacyl-[acyl-carrier-protein] synthase 3	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf08936g04001.1	gb|KEH35704.1|	***-	tapetum determinant protein [Medicago truncatula]		
Niben101Scf07863g00029.1	sp|Q8PWF5|MSRB_METMA	-***	Peptide methionine sulfoxide reductase MsrB	IPR011057 (Mss4-like)	GO:0033743 (peptide-methionine (R)-S-oxide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03952g02003.1	sp|O04004|NLTP6_AMBAR	****	Non-specific lipid-transfer protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf02537g02031.1	sp|Q9ZUA2|PP141_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR021869 (Ribonuclease Zc3h12a-like)	
Niben101Scf04411g03015.1	sp|Q6CJI0|SLT11_KLULA	*-*-	Pre-mRNA-splicing factor SLT11	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf02068g00007.1	gb|ABI34372.1|	--*-	RNase H family protein [Solanum demissum]		
Niben101Scf01943g02001.1			Unknown protein		
Niben101Scf07339g02011.1	ref|WP_006456841.1|	***-	membrane protein [Synechococcus sp. PCC 7335] gb|EDX87057.1| Vitamin K epoxide reductase family [Synechococcus sp. PCC 7335]	IPR012336 (Thioredoxin-like fold), IPR012932 (Vitamin K epoxide reductase)	
Niben101Scf01683g08006.1	ref|XP_007048180.1|	--*-	Essential meiotic endonuclease 1B, putative isoform 2 [Theobroma cacao] gb|EOX92337.1| Essential meiotic endonuclease 1B, putative isoform 2 [Theobroma cacao]		
Niben101Scf18951g00009.1	sp|Q14181|DPOA2_HUMAN	****	DNA polymerase alpha subunit B	IPR016722 (DNA polymerase alpha, subunit B)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication)
Niben101Scf04980g00034.1	sp|B9E9G9|LUTB_MACCJ	--*-	Lactate utilization protein B		
Niben101Scf04102g03014.1	sp|Q940P5|TET19_ARATH	***-	Tetraspanin-19		
Niben101Scf18879g02004.1	sp|Q54TT4|COG3_DICDI	*-**	Conserved oligomeric Golgi complex subunit 3	IPR007265 (Conserved oligomeric Golgi complex, subunit 3)	GO:0005801 (cis-Golgi network), GO:0006886 (intracellular protein transport), GO:0016020 (membrane)
Niben101Scf03855g01005.1	AT1G08820.1	*-*-	vamp/synaptobrevin-associated protein 27-2 LENGTH=386	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf01852g01033.1			Unknown protein		
Niben101Scf10438g00008.1	sp|Q9FIB6|PS12A_ARATH	***-	26S proteasome non-ATPase regulatory subunit 12 homolog A	IPR000717 (Proteasome component (PCI) domain)	GO:0005515 (protein binding)
Niben101Scf06766g00001.1	AT2G34160.1	****	Alba DNA/RNA-binding protein LENGTH=130	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Scf04783g08005.1	emb|CDX92561.1|	*-*-	BnaA10g16000D [Brassica napus]		
Niben101Scf04403g03002.1	emb|CDY54151.1|	*-*-	BnaCnng26310D [Brassica napus]		
Niben101Scf06058g00015.1	sp|C6DGH6|BIOH_PECCP	***-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01220g02009.1	AT4G13230.1	*-*-	Late embryogenesis abundant protein (LEA) family protein LENGTH=120		
Niben101Scf03964g03004.1			Unknown protein		
Niben101Scf00646g09003.1	sp|Q9SZH2|PER43_ARATH	****	Peroxidase 43	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01602g06015.1			Unknown protein		
Niben101Scf09074g00023.1	sp|Q9FL16|PER63_ARATH	****	Peroxidase 63	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03202g02006.1	sp|Q9M390|PTR1_ARATH	***-	Protein NRT1/ PTR FAMILY 8.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf00127g04010.1	sp|Q9S9N1|HSP7E_ARATH	*-*-	Heat shock 70 kDa protein 5	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf03320g04005.1	sp|Q07262|1A1C_TOBAC	*-*-	1-aminocyclopropane-1-carboxylate synthase		
Niben101Scf04223g00004.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf02852g02006.1			Unknown protein		
Niben101Scf00189g04001.1	sp|Q9FXH1|PPR52_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05827g04003.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06621g00010.1	sp|Q93Y09|SCP45_ARATH	****	Serine carboxypeptidase-like 45	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04655g02006.1	sp|A6H5H1|PSAB_CYCTA	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001209 (Ribosomal protein S14), IPR001280 (Photosystem I PsaA/PsaB)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf13421g00002.1	sp|Q9Y6U7|RN215_HUMAN	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01687g00006.1	sp|Q5ZI67|NHLC2_CHICK	*-*-	NHL repeat-containing protein 2	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0005515 (protein binding)
Niben101Ctg08285g00001.1	sp|G5CEW6|IF4G_WHEAT	--*-	Eukaryotic translation initiation factor 4G	IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf15067g04023.1	sp|P45432|CSN1_ARATH	***-	COP9 signalosome complex subunit 1	IPR000717 (Proteasome component (PCI) domain), IPR019585 (26S proteasome, regulatory subunit Rpn7)	GO:0005515 (protein binding)
Niben101Scf00294g03032.1	sp|Q9HLY2|RS12_THEAC	*-*-	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23), IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0003735 (structural constituent of ribosome), GO:0004252 (serine-type endopeptidase activity), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0006508 (proteolysis)
Niben101Scf01055g01010.1	sp|P23438|SSRB_CANFA	***-	Translocon-associated protein subunit beta	IPR008856 (Translocon-associated protein subunit beta)	GO:0005783 (endoplasmic reticulum), GO:0016021 (integral component of membrane)
Niben101Scf00331g02005.1	sp|Q704U0|XPO7A_XENLA	*-*-	Exportin-7-A		
Niben101Scf06332g00010.1	sp|Q8X132|H2A_NEUCR	***-	Histone H2A	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf00773g03003.1	sp|Q9CAL2|CRK3_ARATH	*-**	Cysteine-rich receptor-like protein kinase 3	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05948g01016.1	AT5G63890.2	****	histidinol dehydrogenase LENGTH=466	IPR012131 (Histidinol dehydrogenase), IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0000105 (histidine biosynthetic process), GO:0004399 (histidinol dehydrogenase activity), GO:0008152 (metabolic process), GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01724g00001.1	sp|P10967|ACCH3_SOLLC	***-	1-aminocyclopropane-1-carboxylate oxidase homolog	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf06256g03008.1	ref|WP_013413882.1|	****	arsenic transporter ATPase [Methanothermus fervidus] ref|YP_004004366.1| arsenite efflux ATP-binding protein arsa [Methanothermus fervidus DSM 2088] gb|ADP77604.1| arsenite efflux ATP-binding protein ArsA [Methanothermus fervidus DSM 2088]	IPR016300 (Arsenical pump ATPase, ArsA/GET3), IPR025723 (Anion-transporting ATPase-like domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf01640g01003.1	sp|A4J2F4|SYI_DESRM	--*-	Isoleucine--tRNA ligase		
Niben101Scf06637g00020.1	emb|CBR23889.1|	*-*-	Ycf1 protein [Olea europaea subsp. cuspidata]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf10476g05007.1	sp|Q9FNX5|DRP1E_ARATH	***-	Dynamin-related protein 1E	IPR000375 (Dynamin central domain), IPR001401 (Dynamin, GTPase domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf07508g01008.1	sp|Q8RU31|MAD21_ORYSJ	*-*-	MADS-box transcription factor 21	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf11254g00005.1	sp|Q498U4|SARNP_RAT	--*-	SAP domain-containing ribonucleoprotein		
Niben101Scf02971g01003.1	sp|P46417|GSTX3_SOYBN	***-	Glutathione S-transferase 3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf14102g00006.1	sp|Q9SUY0|FB244_ARATH	***-	F-box protein	IPR017451 (F-box associated interaction domain)	
Niben101Scf08755g01010.1	sp|Q9LSD5|TCP20_ARATH	--*-	Transcription factor TCP20		
Niben101Scf01036g00006.1	sp|Q11180|WHT1_CAEEL	****	ABC transporter ATP-binding protein/permease wht-1	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf01695g01015.1	sp|Q0P5L0|RBM42_BOVIN	--*-	RNA-binding protein 42		
Niben101Scf04740g00006.1	AT2G42210.2	***-	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein LENGTH=173	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Scf06156g04010.1	sp|Q9LTW9|FLA14_ARATH	*-*-	Fasciclin-like arabinogalactan protein 14	IPR000782 (FAS1 domain)	
Niben101Scf07466g00001.1	sp|Q9SKB3|PARG1_ARATH	****	Poly(ADP-ribose) glycohydrolase 1	IPR007724 (Poly(ADP-ribose) glycohydrolase)	GO:0004649 (poly(ADP-ribose) glycohydrolase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04557g00001.1	AT2G36870.1	****	xyloglucan endotransglucosylase/hydrolase 32 LENGTH=299	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf02145g08006.1	sp|O24554|PLY_ZINVI	***-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf36372g00002.1	sp|Q8VYM0|ERF93_ARATH	*-**	Ethylene-responsive transcription factor 15	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06518g00007.1	AT1G45207.2	***-	Remorin family protein LENGTH=555	IPR005516 (Remorin, C-terminal)	
Niben101Scf01071g00009.1	sp|Q3URQ7|MTHSD_MOUSE	*-*-	Methenyltetrahydrofolate synthase domain-containing protein		
Niben101Scf01693g00018.1	sp|Q9LDA9|CAF2P_ARATH	***-	CRS2-associated factor 2, chloroplastic	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf04950g00001.1	AT1G09890.1	*-*-	Rhamnogalacturonate lyase family protein LENGTH=617	IPR010325 (Rhamnogalacturonate lyase), IPR011013 (Galactose mutarotase-like domain), IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf12676g00025.1	emb|CAE05522.2|	--*-	OSJNBa0038P21.15 [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf00508g10006.1	sp|P24583|KPC1_YEAST	*-**	Protein kinase C-like 1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05621g05005.1	sp|P80729|NUO6_SOLTU	--*-	NADH-ubiquinone oxidoreductase 11 kDa subunit		
Niben101Scf00773g14006.1	sp|Q9SHK2|PPR17_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06607g00001.1	sp|O49006|PME3_ARATH	****	Pectinesterase/pectinesterase inhibitor 3	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02852g01011.1	AT4G30130.1	***-	Protein of unknown function (DUF630 and DUF632) LENGTH=725	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf00199g00010.1	sp|Q3J3F8|NUOD_RHOS4	--*-	NADH-quinone oxidoreductase subunit D	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00024g03006.1	AT3G47890.1	****	Ubiquitin carboxyl-terminal hydrolase-related protein LENGTH=1568	IPR006865 (Domain of unknown function DUF629), IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf00852g00004.1	ref|NP_001047002.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf19995g00003.1			Unknown protein		
Niben101Scf03939g01001.1	AT5G62570.2	***-	Calmodulin binding protein-like LENGTH=494	IPR012416 (Calmodulin binding protein-like)	
Niben101Scf00559g03007.1	ref|WP_017325952.1|	--*-	high light inducible protein [Synechococcus sp. PCC 7336]	IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf15227g00005.1	sp|P51110|DFRA_VITVI	***-	Dihydroflavonol-4-reductase	IPR016040 (NAD(P)-binding domain)	
Niben101Scf05155g00010.1	AT1G19990.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=251		
Niben101Scf15536g03008.1	sp|Q6DR20|FB110_ARATH	***-	F-box protein	IPR005174 (Protein of unknown function DUF295)	
Niben101Scf00825g03006.1	sp|B7K5W1|RIMM_CYAP8	*-*-	Ribosome maturation factor RimM	IPR002676 (RimM protein), IPR009000 (Translation protein, beta-barrel domain)	GO:0006364 (rRNA processing)
Niben101Scf03101g01001.1	sp|Q9ZUA0|OST1B_ARATH	****	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B	IPR007676 (Ribophorin I)	GO:0004579 (dolichyl-diphosphooligosaccharide-protein glycotransferase activity), GO:0005783 (endoplasmic reticulum), GO:0006486 (protein glycosylation), GO:0016021 (integral component of membrane)
Niben101Scf04420g01004.1	sp|Q9FMJ0|P4KB1_ARATH	****	Phosphatidylinositol 4-kinase beta 1	IPR015433 (Phosphatidylinositol Kinase), IPR016024 (Armadillo-type fold)	GO:0004430 (1-phosphatidylinositol 4-kinase activity), GO:0005488 (binding), GO:0006661 (phosphatidylinositol biosynthetic process), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016773 (phosphotransferase activity, alcohol group as acceptor), GO:0046854 (phosphatidylinositol phosphorylation), GO:0048015 (phosphatidylinositol-mediated signaling)
Niben101Scf00369g13007.1	AT1G56220.3	***-	Dormancy/auxin associated family protein LENGTH=140	IPR008406 (Dormancyauxin associated)	
Niben101Scf05405g05011.1	sp|Q0WQF4|VP53A_ARATH	***-	Vacuolar protein sorting-associated protein 53 A	IPR007234 (Vps53-like, N-terminal)	
Niben101Scf10007g01011.1	ref|NP_001077727.1|	*-*-	embryo defective protein 1303 [Arabidopsis thaliana] gb|AEE33359.1| embryo defective protein 1303 [Arabidopsis thaliana]		
Niben101Scf04765g02006.1	sp|Q32L15|RN141_BOVIN	*-*-	RING finger protein 141	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01738g06009.1	sp|Q84WG0|PTR26_ARATH	***-	Protein NRT1/ PTR FAMILY 8.4	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00765g03006.1	AT5G17610.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=121		
Niben101Scf12541g00003.1	ref|XP_002523546.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38885.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf17776g00007.1	sp|Q9ASU7|PPAN_ARATH	***-	Peter Pan-like protein	IPR007109 (Brix domain)	
Niben101Scf11334g01003.1	AT1G28700.1	*-*-	Nucleotide-diphospho-sugar transferase family protein LENGTH=338	IPR005069 (Nucleotide-diphospho-sugar transferase)	
Niben101Scf08680g02015.1	AT2G24610.1	***-	cyclic nucleotide-gated channel 14 LENGTH=726	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf08137g01018.1	AT2G25720.1	***-	unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=117	IPR013865 (Protein of unknown function DUF1754, eukaryotic)	
Niben101Scf11497g00004.1			Unknown protein		
Niben101Scf08341g05018.1	sp|Q9BTT6|LRRC1_HUMAN	*-*-	Leucine-rich repeat-containing protein 1	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf07109g05015.1	AT2G16770.1	****	Basic-leucine zipper (bZIP) transcription factor family protein LENGTH=249	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08322g01012.1	AT2G05060.1	*-**	Protein kinase superfamily protein LENGTH=315	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06369g03010.1	gb|KEH18880.1|	***-	Ripening related protein family [Medicago truncatula]	IPR009009 (RlpA-like double-psi beta-barrel domain)	
Niben101Scf01599g00013.1	sp|Q93VJ4|BEE2_ARATH	--*-	Transcription factor BEE 2		
Niben101Scf11416g00016.1	sp|P42794|RL112_ARATH	***-	60S ribosomal protein L11-2	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03522g00008.1	sp|Q13DN7|RPPH_RHOPS	--*-	RNA pyrophosphohydrolase		
Niben101Scf10713g00008.1	gb|ACF19789.1|	*-*-	NAC transcription factor [Nicotiana tabacum]	IPR003441 (NAC domain)	
Niben101Scf01653g00006.1			Unknown protein		
Niben101Scf14320g00012.1	ref|WP_017350021.1|	--*-	DNA adenine methylase [Pantoea sp. A4]		
Niben101Scf03389g00021.1	sp|Q84W80|FBL42_ARATH	*-*-	F-box/LRR-repeat protein		
Niben101Scf04905g01010.1	gb|AAC02666.1|	--*-	polyprotein [Arabidopsis thaliana]		
Niben101Scf01032g02005.1	AT5G42930.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=467	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf04011g06004.1	AT5G55090.1	****	mitogen-activated protein kinase kinase kinase 15 LENGTH=448	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00343g09030.1	gb|EMT31987.1|	*-*-	Ankyrin-1 [Aegilops tauschii]	IPR023114 (Elongated TPR repeat-containing domain)	
Niben101Scf03979g01014.1	ref|XP_007014298.1|	***-	A-kinase anchor protein 9, putative isoform 2 [Theobroma cacao] gb|EOY31917.1| A-kinase anchor protein 9, putative isoform 2 [Theobroma cacao]		
Niben101Scf10067g02017.1	sp|Q9CAY3|GPAT5_ARATH	***-	Glycerol-3-phosphate acyltransferase 5	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf17415g00001.1	sp|Q8N283|ANR35_HUMAN	--*-	Ankyrin repeat domain-containing protein 35	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf08280g01020.1	sp|Q9NVG8|TBC13_HUMAN	*-*-	TBC1 domain family member 13	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf11376g00009.1	sp|Q93Z75|UPS5_ARATH	*-*-	Ureide permease 5	IPR009834 (Ureide permease)	GO:0071705 (nitrogen compound transport)
Niben101Scf05841g01021.1	sp|Q8H1D4|DRB4_ARATH	*-*-	Double-stranded RNA-binding protein 4	IPR014720 (Double-stranded RNA-binding domain)	
Niben101Scf04114g01045.1	sp|P93311|RM02_ARATH	*-*-	60S ribosomal protein L2, mitochondrial		
Niben101Scf01376g03015.1	sp|Q53P98|SIPL2_ORYSJ	*-**	Signal peptide peptidase-like 2	IPR003137 (Protease-associated domain, PA), IPR007369 (Peptidase A22B, signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf02909g01004.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06579g00007.1	sp|P48502|QCR7_SOLTU	****	Cytochrome b-c1 complex subunit 7	IPR003197 (Cytochrome b-c1 complex subunit 7)	GO:0005750 (mitochondrial respiratory chain complex III), GO:0006122 (mitochondrial electron transport, ubiquinol to cytochrome c)
Niben101Scf00811g02002.1	sp|Q5U5Q3|MEX3C_HUMAN	--**	RNA-binding E3 ubiquitin-protein ligase MEX3C	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00338g05001.1	ref|XP_003615152.1|	*-**	2-dehydro-3-deoxyphosphoheptonate aldolase (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase) [Medicago truncatula] gb|AES98110.1| phospho-2-dehydro-3-deoxyheptonate aldolase [Medicago truncatula]	IPR002480 (DAHP synthetase, class II)	GO:0003849 (3-deoxy-7-phosphoheptulonate synthase activity), GO:0009073 (aromatic amino acid family biosynthetic process)
Niben101Scf01510g00002.1			Unknown protein		
Niben101Scf01006g02011.1	AT5G24270.1	*-**	Calcium-binding EF-hand family protein LENGTH=222	IPR015757 (Calcineurin B protein)	GO:0005509 (calcium ion binding)
Niben101Scf02831g02031.1	sp|Q9LTR9|NMT1_ARATH	*-**	Glycylpeptide N-tetradecanoyltransferase 1	IPR000903 (Myristoyl-CoA:protein N-myristoyltransferase)	GO:0004379 (glycylpeptide N-tetradecanoyltransferase activity), GO:0006499 (N-terminal protein myristoylation)
Niben101Scf00096g05004.1	gb|ADX62222.1|	*-*-	Ycf1, partial (chloroplast) [Lepechinia mexicana]		
Niben101Scf06570g01001.1	gb|ABA99010.1|	--*-	expressed protein [Oryza sativa Japonica Group] gb|EAZ20576.1| hypothetical protein OsJ_36185 [Oryza sativa Japonica Group]		
Niben101Scf02538g05007.1	sp|Q8RWF5|MATE9_ARATH	***-	MATE efflux family protein 9	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Ctg14695g00001.1	gb|ABB47928.2|	*-*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf05112g01003.1	AT1G79940.1	*-*-	DnaJ / Sec63 Brl domains-containing protein LENGTH=687	IPR000008 (C2 domain), IPR004179 (Sec63 domain), IPR014756 (Immunoglobulin E-set), IPR027137 (Translocation protein Sec63)	GO:0005515 (protein binding), GO:0008565 (protein transporter activity), GO:0031204 (posttranslational protein targeting to membrane, translocation)
Niben101Scf36446g00002.1	emb|CDX98522.1|	*-*-	BnaC05g38530D [Brassica napus]		
Niben101Scf03723g01001.1	sp|Q3IRQ4|LEUC_NATPD	*-*-	3-isopropylmalate dehydratase large subunit	IPR015937 (Aconitase/isopropylmalate dehydratase)	GO:0008152 (metabolic process)
Niben101Scf00980g02009.1	AT1G08470.1	****	strictosidine synthase-like 3 LENGTH=390	IPR004141 (Strictosidine synthase)	GO:0009058 (biosynthetic process), GO:0016844 (strictosidine synthase activity)
Niben101Scf25283g00004.1	sp|Q6G9R0|MIAA_STAAS	*-**	tRNA dimethylallyltransferase	IPR002627 (tRNA isopentenyltransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf07103g01022.1	gb|AGZ19152.1|	*-*-	acetyl-CoA carboxylase carboxyltransferase beta subunit (chloroplast) [Camellia sinensis]		
Niben101Scf01534g02007.1	sp|Q9ZVJ6|ANXD4_ARATH	***-	Annexin D4	IPR018502 (Annexin repeat)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf04788g00007.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC)	GO:0043531 (ADP binding)
Niben101Scf03374g05005.1	gb|AGI48778.1|	*-*-	ribosomal protein S4 (mitochondrion) [Lolium perenne]	IPR022801 (Ribosomal protein S4/S9)	
Niben101Scf01663g01003.1	sp|B6EJA3|TRPB_ALISL	--*-	Tryptophan synthase beta chain		
Niben101Scf02798g00051.1			Unknown protein		
Niben101Scf05942g02001.1	AT3G47890.1	****	Ubiquitin carboxyl-terminal hydrolase-related protein LENGTH=1568	IPR006865 (Domain of unknown function DUF629), IPR006866 (Domain of unknown function DUF627, N-terminal), IPR007087 (Zinc finger, C2H2), IPR011990 (Tetratricopeptide-like helical domain), IPR028889 (Ubiquitin specific protease domain)	GO:0005515 (protein binding), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf00023g00004.1	sp|Q62IG3|MSBA_BURMA	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf05720g06006.1	AT4G32285.1	***-	ENTH/ANTH/VHS superfamily protein LENGTH=635	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf04988g01015.1	AT4G11400.1	****	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=573	IPR000949 (ELM2 domain), IPR001606 (ARID DNA-binding domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Ctg07067g00001.1			Unknown protein		
Niben101Scf03888g01019.1	sp|Q9FQ27|TPSGB_SOLHA	*-**	(E,E)-germacrene B synthase	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf07524g00003.1	sp|Q16P90|MOCO3_AEDAE	*-*-	Molybdenum cofactor sulfurase 3	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03478g00013.1	gb|KEH41827.1|	*-*-	TPX2 (targeting protein for Xklp2) family protein [Medicago truncatula]		
Niben101Scf11401g01010.1	sp|Q6AJW3|MSBA_DESPS	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf07741g00007.1	sp|P46297|RS23_FRAAN	*-*-	40S ribosomal protein S23	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04044g10001.1	AT2G40095.1	***-	Alpha/beta hydrolase related protein LENGTH=209		
Niben101Scf00108g05008.1	sp|Q9STR4|1A17_ARATH	***-	1-aminocyclopropane-1-carboxylate synthase 7	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf08194g02029.1	ref|WP_019477901.1|	***-	alpha/beta hydrolase [Prochlorococcus sp. W8]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00541g05002.1	ref|WP_026195602.1|	****	alkyl hydroperoxide reductase [Verrucomicrobium sp. 3C]	IPR012336 (Thioredoxin-like fold)	GO:0016491 (oxidoreductase activity)
Niben101Scf00712g10025.1	AT1G20760.1	****	Calcium-binding EF hand family protein LENGTH=1019	IPR000261 (EPS15 homology (EH)), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding), GO:0005515 (protein binding)
Niben101Scf01182g00001.1	sp|Q5WFJ4|PYRDB_BACSK	****	Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit	IPR005720 (Dihydroorotate dehydrogenase domain), IPR012135 (Dihydroorotate dehydrogenase, class 1/ 2), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004152 (dihydroorotate dehydrogenase activity), GO:0005737 (cytoplasm), GO:0006222 (UMP biosynthetic process), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0055114 (oxidation-reduction process)
Niben101Scf10328g00024.1	sp|Q7VQV0|RL34_BLOFL	--*-	50S ribosomal protein L34	IPR000271 (Ribosomal protein L34)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08621g00007.1	AT1G31175.1	***-	unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=118		
Niben101Scf02164g05014.1	sp|Q9SIM4|RL141_ARATH	***-	60S ribosomal protein L14-1	IPR002784 (Ribosomal protein L14), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01090g03017.1	sp|Q9XHP0|11S2_SESIN	***-	11S globulin seed storage protein 2	IPR006044 (11-S seed storage protein, plant)	GO:0045735 (nutrient reservoir activity)
Niben101Scf03413g02025.1	sp|Q9SR72|GL32_ARATH	*-*-	Germin-like protein subfamily 3 member 2	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf05952g00002.1	sp|P46423|GSTF_HYOMU	***-	Glutathione S-transferase	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf05449g03005.1	sp|Q5HZ36|GAT21_ARATH	*-**	GATA transcription factor 21	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04028g02017.1	sp|O65162|CAMT_MESCR	****	Caffeoyl-CoA O-methyltransferase	IPR002935 (O-methyltransferase, family 3), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008171 (O-methyltransferase activity)
Niben101Scf02688g00008.1	sp|Q9LXV0|U92A1_ARATH	***-	UDP-glycosyltransferase 92A1	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf14378g02005.1	sp|F4I096|MED13_ARATH	****	Mediator of RNA polymerase II transcription subunit 13	IPR009401 (Mediator complex, subunit Med13)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0016592 (mediator complex)
Niben101Scf00157g02005.1	emb|CDY17280.1|	***-	BnaA10g09140D [Brassica napus]		
Niben101Scf02814g00006.1	AT1G23480.1	***-	cellulose synthase-like A3 LENGTH=556	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf06263g01011.1	AT5G66030.1	****	Golgi-localized GRIP domain-containing protein LENGTH=788	IPR000237 (GRIP)	GO:0000042 (protein targeting to Golgi), GO:0005515 (protein binding)
Niben101Scf02422g01007.1	sp|Q9S7T8|SPZX_ARATH	*-*-	Serpin-ZX	IPR000215 (Serpin family), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf00085g06010.1	emb|CAQ58617.1|	****	transferase, transferring glycosyl groups / unknown protein [Vitis vinifera]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf02994g01003.1	sp|P0C8A0|PP275_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf14311g01006.1	sp|Q03066|RPSC_NOSS1	*-**	RNA polymerase sigma-C factor	IPR014284 (RNA polymerase sigma-70 like domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Scf03864g00005.1	AT1G64720.1	****	Polyketide cyclase/dehydrase and lipid transport superfamily protein LENGTH=385	IPR002913 (START domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf02237g02005.1	AT1G10530.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=166	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf02164g02002.1	sp|Q3E8X3|PTR52_ARATH	***-	Protein NRT1/ PTR FAMILY 2.8	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01658g01011.1	sp|P80512|ADH1_NAJNA	***-	Alcohol dehydrogenase 1	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf38001g00011.1	ref|WP_009664744.1|	*-**	cysteine desulfurase activator complex subunit SufB [Oxalobacteraceae bacterium IMCC9480] gb|EGF33542.1| Iron-sulfur cluster assembly protein SufB [Oxalobacteraceae bacterium IMCC9480]	IPR000825 (SUF system FeS cluster assembly, SufBD)	GO:0016226 (iron-sulfur cluster assembly)
Niben101Scf06562g01011.1	sp|Q7ZU99|TERA_DANRE	*-*-	Transitional endoplasmic reticulum ATPase	IPR009010 (Aspartate decarboxylase-like domain), IPR029067 (CDC48 domain 2-like)	
Niben101Scf04081g00001.1	AT4G19610.1	****	nucleotide binding;nucleic acid binding;RNA binding LENGTH=816	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02297g08006.1	AT5G10270.1	*-**	cyclin-dependent kinase C;1 LENGTH=505	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08006g01002.1	gb|AAU95633.1|	***-	R1 [Solanum tuberosum]	IPR002182 (NB-ARC), IPR021929 (Late blight resistance protein R1)	GO:0043531 (ADP binding)
Niben101Scf03282g03001.1	sp|Q6PH57|GBB1_DANRE	*-**	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	IPR007148 (Small-subunit processome, Utp12), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00536g03014.1	sp|Q29KL8|DAAF1_DROPS	--*-	Dynein assembly factor 1, axonemal homolog	IPR014002 (Tudor-like, plant)	
Niben101Scf09321g02022.1	sp|Q9USR1|TXL1_SCHPO	*-*-	Thioredoxin-like protein 1	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03268g01010.1	AT1G54150.1	****	E3 Ubiquitin ligase family protein LENGTH=383	IPR022170 (Mitochondrial ubiquitin ligase activator of NFKB 1)	GO:0004842 (ubiquitin-protein transferase activity), GO:0007005 (mitochondrion organization)
Niben101Scf00901g06011.1	sp|Q9LW15|CX5B1_ARATH	*-**	Cytochrome c oxidase subunit 5b-1, mitochondrial	IPR002124 (Cytochrome c oxidase, subunit Vb)	GO:0004129 (cytochrome-c oxidase activity), GO:0005740 (mitochondrial envelope)
Niben101Scf08168g02001.1			Unknown protein		
Niben101Scf06980g00004.1	sp|D8VPP5|AL11A_OLEEU	****	Pectinesterase 1	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf06782g01010.1			Unknown protein		
Niben101Scf00051g03010.1	sp|Q49CB2|PSAB_CUSSA	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf07281g00019.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf24330g00012.1	ref|WP_017965293.1|	***-	LPS:glycosyltransferase [Rhizobium leguminosarum]	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf07761g02001.1	emb|CDY27643.1|	***-	BnaA09g27640D [Brassica napus]		
Niben101Scf04911g00003.1	AT4G37110.1	***-	Zinc-finger domain of monoamine-oxidase A repressor R1 LENGTH=417	IPR018866 (Zinc-finger domain of monoamine-oxidase A repressor R1)	
Niben101Scf05321g04006.1	ref|NP_001052935.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf34895g00004.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06823g02016.1			Unknown protein	IPR003882 (Pistil-specific extensin-like protein)	GO:0005199 (structural constituent of cell wall)
Niben101Scf02055g00008.1	gb|ABV29170.1|	*-*-	disease resistance protein R3a-like protein [Solanum demissum]	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf06831g01009.1	sp|P22852|TBB_POLAG	*-*-	Tubulin beta chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf21788g00004.1			Unknown protein		
Niben101Scf05921g03005.1	gb|ABF97674.1|	*-*-	expressed protein [Oryza sativa Japonica Group]	IPR025476 (Helitron helicase-like domain)	
Niben101Scf13242g00003.1	AT5G08770.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=297		
Niben101Scf03116g01002.1	AT3G02100.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=464	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02909g03001.1			Unknown protein		
Niben101Scf06506g02016.1	AT5G11540.1	****	D-arabinono-1,4-lactone oxidase family protein LENGTH=585	IPR007173 (D-arabinono-1,4-lactone oxidase), IPR010030 (Plant-specific FAD-dependent oxidoreductase), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0003885 (D-arabinono-1,4-lactone oxidase activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01278g06002.1	AT1G56150.1	***-	SAUR-like auxin-responsive protein family LENGTH=110	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf00704g01017.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10560g00004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00646g04009.1	sp|O59418|RL3_PYRHO	***-	50S ribosomal protein L3	IPR000597 (Ribosomal protein L3), IPR009000 (Translation protein, beta-barrel domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05708g00005.1	AT2G07750.1	*-*-	DEA(D/H)-box RNA helicase family protein LENGTH=845		
Niben101Scf03292g04003.1	sp|Q8GW29|LOG7_ARATH	***-	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf00130g01022.1	sp|Q5U241|PD5BB_XENLA	*-*-	Sister chromatid cohesion protein PDS5 homolog B-B	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf05111g00015.1	AT1G29500.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02573g00003.1	ref|XP_007036566.1|	--*-	Core-2/I-branching beta-1,6-N-acetylgluc [Theobroma cacao]		
Niben101Scf05437g05004.1	AT4G32660.1	****	Protein kinase superfamily protein LENGTH=400	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02430g03001.1	sp|D7LBN4|CSPLH_ARALL	***-	CASP-like protein 4B1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf13505g02010.1	gb|ADY77002.1|	****	iron-sulfur cluster assembly protein NFU4 [Ipomoea batatas] gb|ADY77005.1| iron-sulfur cluster assembly protein NFU4 [Ipomoea batatas]	IPR017065 (HIRA-interacting protein 5)	GO:0005506 (iron ion binding), GO:0005737 (cytoplasm), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf02406g04030.1	AT3G50440.1	***-	methyl esterase 10 LENGTH=288	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04393g00016.1			Unknown protein		
Niben101Scf00436g06007.1	sp|Q39262|ZFP3_ARATH	--*-	Zinc finger protein 3	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf09445g04020.1	AT1G64640.1	***-	early nodulin-like protein 8 LENGTH=191	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf03221g00007.1			Unknown protein		
Niben101Scf06385g00019.1			Unknown protein		
Niben101Scf07188g00015.1	AT1G26360.1	*-*-	methyl esterase 13 LENGTH=444	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf06674g00004.1	sp|Q9SJZ6|MED18_ARATH	***-	Mediator of RNA polymerase II transcription subunit 18		
Niben101Scf01075g02023.1	emb|CDY57544.1|	***-	BnaA05g33450D [Brassica napus]		
Niben101Scf04096g01003.1	sp|Q6DJE4|CPSF5_XENLA	****	Cleavage and polyadenylation specificity factor subunit 5	IPR016706 (Cleavage/polyadenylation specificity factor subunit 5)	GO:0003729 (mRNA binding), GO:0005849 (mRNA cleavage factor complex), GO:0006378 (mRNA polyadenylation)
Niben101Scf27265g00026.1	sp|Q9XHL7|TCTP_TOBAC	***-	Translationally-controlled tumor protein homolog	IPR018105 (Translationally controlled tumour protein)	
Niben101Scf01459g01004.1	gb|AAU90336.1|	--*-	F-box protein interaction domain containing protein [Solanum demissum]		
Niben101Scf04053g01008.1	emb|CDY49675.1|	*-*-	BnaC03g61240D [Brassica napus]		
Niben101Scf05620g03014.1	sp|H2DH17|C7A22_PANGI	--*-	Cytochrome P450 CYP749A22	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01616g07015.1	sp|Q9LNC4|GTE4_ARATH	*-*-	Transcription factor GTE4	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf03895g00016.1	AT1G42960.1	*-*-	expressed protein localized to the inner membrane of the chloroplast. LENGTH=168		
Niben101Scf08651g02001.1	AT5G20700.1	***-	Protein of unknown function (DUF581) LENGTH=248	IPR007650 (Zf-FLZ domain)	
Niben101Scf05804g01018.1	AT3G49800.1	*-*-	BSD domain-containing protein LENGTH=428		
Niben101Scf05886g01005.1	AT1G16860.1	*-*-	Ubiquitin-specific protease family C19-related protein LENGTH=474		
Niben101Scf11936g01016.1	sp|Q9LTQ0|RTL2_ARATH	*-**	Ribonuclease 3-like protein 2	IPR000999 (Ribonuclease III domain), IPR001650 (Helicase, C-terminal), IPR003100 (PAZ domain), IPR005034 (Dicer dimerisation domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014720 (Double-stranded RNA-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004525 (ribonuclease III activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006396 (RNA processing), GO:0016891 (endoribonuclease activity, producing 5'-phosphomonoesters)
Niben101Scf11417g00001.1	AT5G58720.1	***-	smr (Small MutS Related) domain-containing protein LENGTH=519	IPR002625 (Smr protein/MutS2 C-terminal), IPR013899 (Domain of unknown function DUF1771)	
Niben101Scf14883g01004.1	ref|XP_002532075.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF30309.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01008g02004.1	sp|Q6H6E6|DI194_ORYSJ	*-*-	Protein DEHYDRATION-INDUCED 19 homolog 4	IPR008598 (Drought induced 19 protein-like, zinc-binding domain)	
Niben101Scf04083g02001.1	AT5G53050.2	***-	alpha/beta-Hydrolases superfamily protein LENGTH=396	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02422g00004.1			Unknown protein		
Niben101Scf00630g05018.1	AT1G78070.1	*-*-	Transducin/WD40 repeat-like superfamily protein LENGTH=449		
Niben101Scf02937g09008.1	ref|XP_003628944.1|	*-*-	UDP-galactose:fucoside alpha-3-galactosyltransferase [Medicago truncatula]	IPR003388 (Reticulon), IPR005069 (Nucleotide-diphospho-sugar transferase)	
Niben101Scf02989g02005.1	sp|O64788|FBD33_ARATH	***-	FBD-associated F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf28239g00002.1	sp|P30962|CCMC_BRADU	****	Heme exporter protein C	IPR002541 (Cytochrome c assembly protein), IPR003557 (Cytochrome c-type biogenesis protein CcmC)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf05932g00001.1	emb|CDX80565.1|	--*-	BnaC07g28790D [Brassica napus]		
Niben101Scf11137g01017.1	gb|ADY38784.1|	*-**	sequence-specific DNA-binding transcription factor [Coffea arabica]	IPR007759 (DNA-directed RNA polymerase delta subunit/Asxl), IPR009057 (Homeodomain-like), IPR018501 (DDT domain superfamily), IPR028942 (WHIM1 domain)	GO:0003677 (DNA binding), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03236g03009.1	sp|Q9Z4H7|HTRA_LACHE	*-**	Serine protease Do-like HtrA	IPR001940 (Peptidase S1C), IPR002164 (Nucleosome assembly protein (NAP)), IPR009003 (Trypsin-like cysteine/serine peptidase domain)	GO:0003824 (catalytic activity), GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly), GO:0006508 (proteolysis)
Niben101Scf30946g00016.1	AT2G27260.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=243	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf05736g01016.1	AT4G28706.4	****	pfkB-like carbohydrate kinase family protein LENGTH=440	IPR002139 (Ribokinase), IPR029056 (Ribokinase-like)	GO:0004747 (ribokinase activity), GO:0006014 (D-ribose metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf09570g00014.1	ref|XP_007022164.1|	*-*-	Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao] gb|EOY13689.1| Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]		
Niben101Scf00854g08065.1			Unknown protein		
Niben101Scf06086g00003.1	sp|Q3E9B5|PTR51_ARATH	*-*-	Protein NRT1/ PTR FAMILY 7.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf12266g06004.1	sp|P93400|PLDA1_TOBAC	****	Phospholipase D alpha 1	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0004630 (phospholipase D activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0046470 (phosphatidylcholine metabolic process)
Niben101Scf10298g00004.1	ref|NP_001052354.1|	***-	product [Oryza sativa Japonica Group]	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf17988g00008.1	emb|CDY33265.1|	--*-	BnaA01g19320D [Brassica napus]		
Niben101Scf00854g01032.1	ref|XP_002515008.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF47562.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03969g05003.1	sp|Q9SLK6|ALA6_ARATH	****	Phospholipid-transporting ATPase 6	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf00225g07011.1	AT5G24380.1	***-	YELLOW STRIPE like 2 LENGTH=664	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf02937g08005.1	sp|A7MFC3|MDTK_CROS8	--*-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01721g04004.1	emb|CDX71867.1|	***-	BnaC08g30070D [Brassica napus]		
Niben101Ctg15304g00001.1	sp|E9QAU8|RN165_MOUSE	*-*-	RING finger protein 165	IPR010543 (Domain of unknown function DUF1117), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00021g01015.1	sp|Q9LXH0|NRT26_ARATH	*-*-	High affinity nitrate transporter 2.6		
Niben101Scf06366g00001.1	gb|ELU38709.1|	--*-	LysM domain-containing protein [Rhizoctonia solani AG-1 IA]	IPR018392 (LysM domain)	
Niben101Scf03940g04005.1	AT3G23150.1	****	Signal transduction histidine kinase, hybrid-type, ethylene sensor LENGTH=773	IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily), IPR014525 (Signal transduction histidine kinase, hybrid-type, ethylene sensor), IPR029016 (GAF domain-like)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004673 (protein histidine kinase activity), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0005789 (endoplasmic reticulum membrane), GO:0007165 (signal transduction), GO:0009873 (ethylene-activated signaling pathway), GO:0016020 (membrane)
Niben101Scf11475g00004.1	sp|Q9C866|PPR65_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00494g04010.1	sp|B0KC20|BIOF_THEP3	***-	8-amino-7-oxononanoate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03934g04013.1	gb|ADL70241.1|	*-*-	auxin signaling F-box 2 [Arabidopsis thaliana]		
Niben101Scf03977g01005.1	sp|P34091|RL6_MESCR	***-	60S ribosomal protein L6	IPR000915 (60S ribosomal protein L6E), IPR005568 (Ribosomal protein L6, N-terminal), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04764g10048.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf10834g01006.1	sp|Q99J47|DRS7B_MOUSE	****	Dehydrogenase/reductase SDR family member 7B	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf33820g00002.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf04132g01004.1	AT2G26150.1	*-**	heat shock transcription factor A2 LENGTH=345	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01377g02014.1	gb|KEH31030.1|	--*-	DUF1764 domain protein [Medicago truncatula]	IPR013885 (Protein of unknown function DUF1764, eukaryotic)	
Niben101Scf00576g01007.1			Unknown protein		
Niben101Scf00454g05004.1	sp|O04937|DHEA_NICPL	***-	Glutamate dehydrogenase A	IPR014362 (Glutamate dehydrogenase), IPR016040 (NAD(P)-binding domain)	GO:0006520 (cellular amino acid metabolic process), GO:0016491 (oxidoreductase activity), GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf02929g00067.1			Unknown protein		
Niben101Scf10162g00004.1	AT1G72330.3	***-	alanine aminotransferase 2 LENGTH=553	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf05717g03015.1	AT3G08600.1	*-*-	Protein of unknown function (DUF1191) LENGTH=316	IPR010605 (Protein of unknown function DUF1191), IPR013320 (Concanavalin A-like lectin/glucanase domain)	
Niben101Scf02172g06021.1	sp|Q9FLQ7|FH20_ARATH	*-*-	Formin-like protein 20	IPR000008 (C2 domain), IPR015425 (Formin, FH2 domain), IPR027643 (Formin-like family, plant), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0005515 (protein binding), GO:0005884 (actin filament), GO:0045010 (actin nucleation)
Niben101Scf00220g03003.1	sp|Q46909|YGCS_ECOLI	*-**	Inner membrane metabolite transport protein YgcS	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain), IPR022091 (TATA element modulatory factor 1 TATA binding), IPR022092 (TATA element modulatory factor 1 DNA binding)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01317g01002.1			Unknown protein		
Niben101Scf03525g01007.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05004g02003.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf04339g02017.1	emb|CDY24256.1|	***-	BnaC03g42290D [Brassica napus]		
Niben101Scf01701g06002.1	AT1G22950.1	*-**	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=397	IPR005123 (Oxoglutarate/iron-dependent dioxygenase)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0031418 (L-ascorbic acid binding), GO:0055114 (oxidation-reduction process)
Niben101Scf26296g00001.1	sp|Q49SP5|TPGAS_POGCB	*-**	Germacrene A synthase	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf00193g05003.1	sp|Q9LJX1|PRE5_ARATH	***-	Transcription factor PRE5		
Niben101Scf07182g06006.1	sp|Q42517|PERN_ARMRU	****	Peroxidase N	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00133g08004.1	ref|XP_002528326.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF34084.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04019g02001.1	sp|Q7G8Y5|GRXC1_ORYSJ	***-	Glutaredoxin-C1	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf05278g00007.1	AT1G07420.1	***-	sterol 4-alpha-methyl-oxidase 2-1 LENGTH=266	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07765g02009.1	sp|Q7TT18|MCAF1_MOUSE	--*-	Activating transcription factor 7-interacting protein 1		
Niben101Scf08112g01002.1	sp|O04004|NLTP6_AMBAR	***-	Non-specific lipid-transfer protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf01676g02008.1	AT4G36380.1	*-*-	Cytochrome P450 superfamily protein LENGTH=524	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf17947g01002.1	sp|Q6ZFT5|KPRS4_ORYSJ	***-	Ribose-phosphate pyrophosphokinase 4	IPR029057 (Phosphoribosyltransferase-like)	GO:0009116 (nucleoside metabolic process)
Niben101Scf00938g01003.1	sp|Q9TVM2|XPO1_DROME	--*-	Exportin-1	IPR011989 (Armadillo-like helical)	
Niben101Scf15007g00002.1	sp|Q8W1W9|5MAT1_SALSN	***-	Malonyl-coenzyme:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf08285g00020.1			Unknown protein		
Niben101Scf08995g00013.1	AT1G09910.1	*-*-	Rhamnogalacturonate lyase family protein LENGTH=675	IPR010325 (Rhamnogalacturonate lyase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf02589g06012.1			Unknown protein		
Niben101Scf04113g05008.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf06865g00001.1	sp|O65036|C3H54_ARATH	*-*-	Zinc finger CCCH domain-containing protein 54		
Niben101Scf06347g01002.1	sp|F4KBW6|NU205_ARATH	*-*-	Nuclear pore complex protein NUP205		
Niben101Scf17360g00005.1	sp|A2RVM0|TIC32_ARATH	*-*-	Short-chain dehydrogenase TIC 32, chloroplastic	IPR002198 (Short-chain dehydrogenase/reductase SDR)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01750g06022.1	AT1G03445.1	*-*-	Serine/threonine protein phosphatase family protein LENGTH=793	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf01063g00003.1	sp|Q9SIT7|PP151_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf05404g00002.1	gb|AES87101.2|	***-	Avr9/Cf-9 rapidly elicited protein [Medicago truncatula]	IPR007700 (Protein of unknown function DUF668), IPR021864 (Protein of unknown function DUF3475)	
Niben101Scf17839g04002.1	sp|Q5ZL42|BZW2_CHICK	--*-	Basic leucine zipper and W2 domain-containing protein 2		
Niben101Scf10032g01004.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11469g00016.1	sp|Q9LVP9|VTI13_ARATH	****	Vesicle transport v-SNARE 13	IPR007705 (Vesicle transport v-SNARE, N-terminal), IPR010989 (t-SNARE)	GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf02620g00007.1	sp|Q9SUT2|PER39_ARATH	*-**	Peroxidase 39	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00109g10001.1	sp|Q8DDD6|TSAC_VIBVU	***-	Threonylcarbamoyl-AMP synthase	IPR017945 (DHBP synthase RibB-like alpha/beta domain)	GO:0003725 (double-stranded RNA binding)
Niben101Scf02237g00002.1	sp|Q3E9X6|CRK21_ARATH	--*-	Cysteine-rich receptor-like protein kinase 21	IPR002902 (Gnk2-homologous domain)	
Niben101Scf23113g00023.1	AT5G05230.1	*-*-	RING/U-box superfamily protein LENGTH=363	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf03628g07005.1	sp|Q67XC4|TBL40_ARATH	*-*-	Protein trichome birefringence-like 40	IPR026057 (PC-Esterase)	
Niben101Scf07419g00003.1	sp|Q9LUV4|FRL4A_ARATH	***-	FRIGIDA-like protein 4a	IPR012474 (Frigida-like)	
Niben101Scf00304g05003.1	sp|Q9ZQI8|NLTL2_ARATH	*-*-	Non-specific lipid-transfer protein-like protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf05674g00010.1	AT5G66940.1	****	Dof-type zinc finger DNA-binding family protein LENGTH=225	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03278g03004.1	sp|Q76LC6|RBM24_DANRE	*-**	RNA-binding protein 24	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02210g03007.1	sp|Q9C7E8|COL15_ARATH	****	Zinc finger protein CONSTANS-LIKE 15	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf02278g00001.1	emb|CDX77401.1|	*-*-	BnaA07g05390D [Brassica napus]		
Niben101Scf02429g04002.1	sp|Q5NE24|NSP2_MEDTR	*-*-	Nodulation-signaling pathway 2 protein	IPR005202 (Transcription factor GRAS), IPR030028 (Scarecrow-like protein 26/nodulation signalling pathway 2)	
Niben101Scf00063g13004.1	sp|Q9LQ02|NRPD1_ARATH	--*-	DNA-directed RNA polymerase IV subunit 1	IPR015801 (Copper amine oxidase, N2/N3-terminal), IPR021602 (Protein of unknown function DUF3223)	GO:0005507 (copper ion binding), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding)
Niben101Scf07951g02017.1	sp|Q9SQG2|APY1_ARATH	***-	Apyrase 1	IPR000407 (Nucleoside phosphatase GDA1/CD39)	GO:0016787 (hydrolase activity)
Niben101Scf04994g00018.1			Unknown protein		
Niben101Scf00773g10004.1			Unknown protein	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf00290g00017.1	sp|B3EWI4|PST2_PETHY	***-	Photosystem II 5 kDa protein, chloroplastic		
Niben101Scf01592g00007.1	sp|O24308|TOP2_PEA	--*-	DNA topoisomerase 2		
Niben101Scf03523g00012.1	AT4G02120.1	*-**	CTP synthase family protein LENGTH=556	IPR004468 (CTP synthase), IPR029062 (Class I glutamine amidotransferase-like)	GO:0003883 (CTP synthase activity), GO:0006221 (pyrimidine nucleotide biosynthetic process)
Niben101Scf08476g00010.1	sp|P78968|PPZ_SCHPO	--*-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf02929g05037.1			Unknown protein		
Niben101Scf00597g01008.1	ref|NP_001234669.1|	--*-	ABI3 protein [Solanum lycopersicum] gb|AAW84252.1| ABI3 [Solanum lycopersicum]		
Niben101Scf01259g01001.1	gb|AFL46171.1|	***-	jasmonate ZIM domain protein f [Nicotiana attenuata]	IPR010399 (Tify)	
Niben101Scf01124g12011.1	gb|KEH17984.1|	*-*-	fatty acid hydroxylase superfamily protein [Medicago truncatula]		
Niben101Scf09475g01017.1	sp|Q197W8|TANA_ARATH	***-	Microtubule-binding protein TANGLED		
Niben101Scf01664g00025.1	AT4G35980.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=87		
Niben101Scf11944g01001.1	sp|Q8C9A2|ENDOV_MOUSE	*-**	Endonuclease V	IPR007581 (Endonuclease V)	GO:0004519 (endonuclease activity), GO:0006281 (DNA repair)
Niben101Scf05827g04004.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00557g02001.1	sp|A7FUZ6|MOAA_CLOB1	****	Cyclic pyranopterin monophosphate synthase	IPR007197 (Radical SAM), IPR013483 (Molybdenum cofactor biosynthesis protein A)	GO:0003824 (catalytic activity), GO:0006777 (Mo-molybdopterin cofactor biosynthetic process), GO:0019008 (molybdopterin synthase complex), GO:0046872 (metal ion binding), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf00481g04007.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00312g01001.1	sp|P86325|EST1_THEFU	*-*-	Carboxylesterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01326g11018.1	sp|O04547|CLE26_ARATH	--*-	CLAVATA3/ESR (CLE)-related protein 26		
Niben101Scf04551g02006.1	sp|Q9H9S4|CB39L_HUMAN	****	Calcium-binding protein 39-like	IPR013878 (Mo25-like)	GO:0005488 (binding)
Niben101Scf08859g00009.1	sp|P21187|PABP_DROME	*-**	Polyadenylate-binding protein	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01693g00017.1	AT2G28130.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). LENGTH=458		
Niben101Scf10215g00009.1	sp|O80939|LRK41_ARATH	--*-	L-type lectin-domain containing receptor kinase IV.1		
Niben101Scf01731g01008.1	sp|Q5ZKH0|TF2H5_CHICK	****	General transcription factor IIH subunit 5	IPR009400 (TFIIH subunit TTDA/Tfb5)	GO:0000439 (core TFIIH complex), GO:0006289 (nucleotide-excision repair), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09792g01012.1	ref|XP_002869579.1|	****	rab GTPase activator [Arabidopsis lyrata subsp. lyrata] gb|EFH45838.1| rab GTPase activator [Arabidopsis lyrata subsp. lyrata]	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf08030g00012.1	sp|P38735|VMR1_YEAST	*-**	ABC transporter ATP-binding protein/permease VMR1	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf08039g00008.1	sp|B1AVH7|TBD2A_MOUSE	*-*-	TBC1 domain family member 2A	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf11126g10008.1	ref|XP_002515340.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46789.1| conserved hypothetical protein [Ricinus communis]	IPR008480 (Protein of unknown function DUF761, plant)	
Niben101Scf14436g03004.1	gb|KEH37527.1|	*-*-	EEIG1/EHBP1 protein amino-terminal domain protein [Medicago truncatula]		
Niben101Scf18343g00015.1	sp|O49564|CRK27_ARATH	*-**	Cysteine-rich receptor-like protein kinase 27	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05437g06035.1	ref|XP_010102929.1|	--*-	Protein-L-isoaspartate O-methyltransferase [Morus notabilis] gb|EXB94447.1| Protein-L-isoaspartate O-methyltransferase [Morus notabilis]		
Niben101Scf01121g00010.1			Unknown protein		
Niben101Ctg14811g00003.1	emb|CDY45368.1|	***-	BnaA09g12530D [Brassica napus]		
Niben101Scf04104g07002.1	AT1G05940.1	*-**	cationic amino acid transporter 9 LENGTH=569	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf16764g00002.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf22883g00002.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09010g04002.1	sp|P26514|XYNA_STRLI	*-*-	Endo-1,4-beta-xylanase A	IPR001000 (Glycoside hydrolase, family 10), IPR008979 (Galactose-binding domain-like), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07365g01028.1	sp|B0VR86|MSRB_ACIBS	****	Peptide methionine sulfoxide reductase MsrB	IPR011057 (Mss4-like), IPR028427 (Peptide methionine sulfoxide reductase)	GO:0006979 (response to oxidative stress), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0030091 (protein repair), GO:0033743 (peptide-methionine (R)-S-oxide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf14436g00004.1	AT2G40730.1	*-*-	Protein kinase family protein with ARM repeat domain LENGTH=798		
Niben101Scf02074g06083.1			Unknown protein		
Niben101Scf11832g00002.1	ref|XP_002520077.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF42401.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05330g00001.1	gb|KEH27779.1|	***-	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]		
Niben101Scf03446g08008.1	sp|Q7PCJ8|SAT2_BOVIN	****	Diamine acetyltransferase 2	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf00240g02005.1	sp|Q8L868|E1311_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 11	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00383g04010.1	sp|O23236|MPK14_ARATH	*-*-	Mitogen-activated protein kinase 14		
Niben101Scf00466g02002.1	AT2G21270.3	***-	ubiquitin fusion degradation 1 LENGTH=340		
Niben101Scf09554g02021.1	sp|Q8XZR0|CLPB_RALSO	***-	Chaperone protein ClpB	IPR001270 (ClpA/B family), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028299 (ClpA/B, conserved site 2)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0009408 (response to heat), GO:0016485 (protein processing), GO:0019538 (protein metabolic process)
Niben101Scf04765g00004.1	sp|A8YTH9|MUTS_LACH4	*-**	DNA mismatch repair protein MutS	IPR005747 (Endonuclease MutS2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0016887 (ATPase activity), GO:0030983 (mismatched DNA binding), GO:0045910 (negative regulation of DNA recombination)
Niben101Scf02565g00007.1	sp|Q39828|SDL5A_SOYBN	*-*-	Dynamin-related protein 5A	IPR000375 (Dynamin central domain), IPR022812 (Dynamin superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00530g04003.1	sp|Q9FGM1|PYL8_ARATH	***-	Abscisic acid receptor PYL8	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf03253g01019.1	sp|Q9LFS8|SMC5_ARATH	*-*-	Structural maintenance of chromosomes protein 5	IPR027131 (Structural maintenance of chromosomes protein 5)	GO:0000724 (double-strand break repair via homologous recombination), GO:0006281 (DNA repair), GO:0030915 (Smc5-Smc6 complex)
Niben101Scf00057g00011.1	emb|CDY39049.1|	***-	BnaA02g17380D [Brassica napus]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf01677g06011.1	sp|B0G159|MCFC_DICDI	*-*-	Mitochondrial substrate carrier family protein C	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf12541g00002.1	ref|XP_002523546.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38885.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03613g00013.1	AT4G39100.1	***-	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein LENGTH=228	IPR001025 (Bromo adjacent homology (BAH) domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02929g00068.1	ref|WP_012511630.1|	--*-	ABC transporter ATP-binding protein [Stenotrophomonas maltophilia] ref|YP_002029093.1| cysteine ABC transporter permease/ATP-binding protein CydC [Stenotrophomonas maltophilia R551-3] gb|ACF52410.1| ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC [Stenotrophomonas maltophilia R551-3]		
Niben101Scf24358g00005.1	sp|Q9M531|H2A_EUPES	--*-	Histone H2A	IPR009072 (Histone-fold)	GO:0046982 (protein heterodimerization activity)
Niben101Scf12589g00003.1	sp|Q6ZQ93|UBP34_MOUSE	*-**	Ubiquitin carboxyl-terminal hydrolase 34	IPR008974 (TRAF-like), IPR024729 (ICP0-binding domain of Ubiquitin-specific protease 7), IPR028889 (Ubiquitin specific protease domain), IPR029346 (Ubiquitin carboxyl-terminal hydrolase, C-terminal)	GO:0005515 (protein binding), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf01911g09004.1	dbj|BAJ72665.1|	*-*-	ethylene response factor 6a [Nicotiana tabacum]		
Niben101Ctg14347g00004.1	AT5G61840.1	***-	Exostosin family protein LENGTH=415	IPR004263 (Exostosin-like)	
Niben101Scf09253g00007.1	sp|P46824|KLC_DROME	*-*-	Kinesin light chain	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00895g00012.1	sp|Q9FIX3|PP407_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05102g02012.1	sp|P19244|HSP41_PEA	***-	22.7 kDa class IV heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf01281g08003.1	sp|B1KQF6|RHLB_SHEWM	****	ATP-dependent RNA helicase RhlB	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf04655g02005.1	sp|P05311|PSAB_PEA	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf02015g04012.1	sp|Q3Z3C3|CBPA_SHISS	--*-	Curved DNA-binding protein	IPR001623 (DnaJ domain)	
Niben101Scf01602g06014.1	ref|WP_016829139.1|	--*-	transketolase [Ureaplasma urealyticum]		
Niben101Scf01322g00001.1	sp|Q6AT41|NNJA4_ORYSJ	***-	Ninja-family protein	IPR012463 (Ninja)	
Niben101Scf15536g03005.1	sp|Q8VZA1|LAC11_ARATH	*-*-	Laccase-11	IPR008972 (Cupredoxin)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03292g00003.1	sp|Q9I8G9|RBBP7_CHICK	--*-	Histone-binding protein RBBP7		
Niben101Scf00161g04007.1	sp|Q0WLC7|Y5053_ARATH	*-*-	CBS domain-containing protein CBSCBSPB4	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf03842g00011.1	sp|Q8SQK0|PRS8_ENCCU	***-	26S protease regulatory subunit 8 homolog	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf01697g17008.1	AT4G20380.8	***-	LSD1 zinc finger family protein LENGTH=210	IPR005735 (Zinc finger, LSD1-type)	
Niben101Scf04760g02010.1	emb|CDY50175.1|	***-	BnaC08g15840D [Brassica napus]		
Niben101Scf01391g05004.1	sp|Q09704|RRP4_SCHPO	****	Exosome complex component rrp4	IPR004088 (K Homology domain, type 1), IPR012340 (Nucleic acid-binding, OB-fold), IPR026699 (Exosome complex RNA-binding protein 1/RRP40/RRP4)	GO:0000178 (exosome (RNase complex)), GO:0003723 (RNA binding)
Niben101Scf06655g00008.1	sp|Q9LUV1|PMEI2_ARATH	-***	Pectinesterase inhibitor 2	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf02232g06012.1	AT1G30040.1	***-	gibberellin 2-oxidase LENGTH=341	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00021g01014.1	sp|Q9LXH0|NRT26_ARATH	*-*-	High affinity nitrate transporter 2.6	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01966g02001.1	AT3G49160.1	****	pyruvate kinase family protein LENGTH=710	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf03969g05002.1	sp|P51193|PSAF_PORPU	****	Photosystem I reaction center subunit III	IPR003666 (Photosystem I PsaF, reaction centre subunit III)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf03779g08023.1	ref|XP_003616507.1|	*-**	LIM and UIM domain-containing [Medicago truncatula] gb|AES99465.1| zinc ion-binding protein [Medicago truncatula]	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf07323g02009.1	sp|Q54GN8|NSA2_DICDI	***-	Ribosome biogenesis protein NSA2 homolog	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	
Niben101Scf11969g00009.1	gb|ABW81176.1|	--*-	non-LTR reverse transcriptase [Arabidopsis cebennensis]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf04628g00004.1	sp|F1MCA7|LRRC7_BOVIN	*-*-	Leucine-rich repeat-containing protein 7	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf01983g10002.1	gb|KEH38557.1|	****	integral membrane family protein [Medicago truncatula]	IPR002794 (Protein of unknown function DUF92, TMEM19)	GO:0016021 (integral component of membrane)
Niben101Scf09570g00015.1	sp|Q9MAP7|SBT35_ARATH	--*-	Subtilisin-like protease SBT3.5		
Niben101Scf03056g01019.1	sp|Q9LZ99|EXPA9_ARATH	***-	Expansin-A9	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf11416g00017.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf02236g03001.1	sp|Q9LIC2|TMN7_ARATH	***-	Transmembrane 9 superfamily member 7	IPR004240 (Nonaspanin (TM9SF))	GO:0016021 (integral component of membrane)
Niben101Scf01209g00013.1	gb|KEH28932.1|	*-*-	DUF674 family protein [Medicago truncatula]	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf21394g00005.1	ref|WP_010487379.1|	*-*-	thymidylate synthase [Pseudomonas sp. S9]	IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR023582 (Impact family)	
Niben101Scf05822g00003.1	gb|AGG35972.1|	--**	calcium-dependent protein kinase 28 [Brassica napus]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01100g01006.1	sp|Q2SD23|FADA_HAHCH	***-	3-ketoacyl-CoA thiolase	IPR002155 (Thiolase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03274g03015.1	emb|CDX68734.1|	***-	BnaC01g07190D [Brassica napus]	IPR006747 (Protein of unknown function DUF599)	
Niben101Scf08635g04005.1	gb|AFR62233.1|	*-*-	methyltransferase, partial [Arabidopsis lyrata subsp. petraea]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf06277g05012.1	AT2G30490.1	***-	cinnamate-4-hydroxylase LENGTH=505	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02354g05017.1	sp|Q7PCJ8|SAT2_BOVIN	****	Diamine acetyltransferase 2	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf14436g01002.1	gb|EEZ33517.1|	*-*-	conserved hypothetical protein [Brucella sp. 83/13]		
Niben101Scf01448g02025.1	sp|A8F997|RL5_BACP2	***-	50S ribosomal protein L5	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01022g02004.1	AT2G16920.1	*-*-	ubiquitin-conjugating enzyme 23 LENGTH=1102	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf01643g00008.1	AT4G34760.1	***-	SAUR-like auxin-responsive protein family LENGTH=107	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf08328g00017.1	AT2G26640.1	***-	3-ketoacyl-CoA synthase 11 LENGTH=509	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf07440g02012.1	sp|Q56XI1|PPR25_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03202g04017.1	sp|Q9LMP1|WAK2_ARATH	****	Wall-associated receptor kinase 2	IPR000742 (Epidermal growth factor-like domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf07147g03003.1	sp|P87131|CYSK2_SCHPO	****	Cysteine synthase 2	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme)	GO:0006535 (cysteine biosynthetic process from serine)
Niben101Scf27265g00025.1	sp|C9REN7|PSB_METVM	****	Proteasome subunit beta	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf15689g00028.1			Unknown protein		
Niben101Scf03350g03003.1	sp|Q9LXJ7|FBD11_ARATH	--*-	FBD-associated F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00438g02010.1			Unknown protein		
Niben101Scf38394g00004.1	sp|Q2QQS5|CCT14_ORYSJ	*-**	Cyclin-T1-4	IPR015429 (Cyclin C/H/T/L)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0019901 (protein kinase binding)
Niben101Scf01188g05001.1	sp|Q4PE39|SEC23_USTMA	****	Protein transport protein SEC23	IPR002035 (von Willebrand factor, type A), IPR006895 (Zinc finger, Sec23/Sec24-type), IPR006896 (Sec23/Sec24, trunk domain), IPR006900 (Sec23/Sec24, helical domain), IPR012990 (Sec23/Sec24 beta-sandwich), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0006886 (intracellular protein transport), GO:0006888 (ER to Golgi vesicle-mediated transport), GO:0008270 (zinc ion binding), GO:0030127 (COPII vesicle coat)
Niben101Scf25394g01003.1	emb|CDY45913.1|	***-	BnaAnng07940D [Brassica napus]		
Niben101Scf08755g04013.1	sp|O49421|FB238_ARATH	--*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf06508g02012.1			Unknown protein		
Niben101Scf10785g01014.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03221g00006.1	gb|EPE06672.1|	****	integral membrane mpv17 pmp22 [Ophiostoma piceae UAMH 11346]	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf02852g03017.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf02915g00007.1	AT1G14750.1	*-*-	Cyclin family protein LENGTH=578	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf06245g00008.1	AT4G14780.1	****	Protein kinase superfamily protein LENGTH=364	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg15722g00003.1	ref|XP_003607265.1|	*-*-	Fasciclin-like arabinogalactan protein [Medicago truncatula]	IPR000782 (FAS1 domain)	
Niben101Scf05916g00004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00592g15015.1	sp|Q9M060|IF62_ARATH	***-	Eukaryotic translation initiation factor 6-2	IPR002769 (Translation initiation factor IF6)	GO:0042256 (mature ribosome assembly), GO:0043022 (ribosome binding)
Niben101Scf04375g00001.1	sp|A0M2A1|LPXD_GRAFK	--*-	UDP-3-O-acylglucosamine N-acyltransferase		
Niben101Scf03403g03041.1	AT3G50240.1	****	ATP binding microtubule motor family protein LENGTH=1051	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf00116g03003.1	AT4G05150.1	***-	Octicosapeptide/Phox/Bem1p family protein LENGTH=477	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf04367g00012.1	AT5G55390.1	***-	ENHANCED DOWNY MILDEW 2 LENGTH=1297	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022702 (DNA (cytosine-5)-methyltransferase 1, replication foci domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01888g04019.1	sp|Q8R3N1|NOP14_MOUSE	--*-	Nucleolar protein 14	IPR007276 (Nucleolar protein 14)	GO:0032040 (small-subunit processome)
Niben101Scf00893g01032.1	AT2G21520.2	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=637	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf17922g02008.1			Unknown protein		
Niben101Scf04944g00016.1	sp|Q4P9T3|CCR4_USTMA	*-*-	Glucose-repressible alcohol dehydrogenase transcriptional effector	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf10065g01016.1	AT2G34750.1	***-	RNA polymerase I specific transcription initiation factor RRN3 protein LENGTH=613	IPR007991 (RNA polymerase I specific transcription initiation factor RRN3)	
Niben101Scf02055g00009.1	gb|AID55064.1|	***-	disease resistance protein, partial [Solanum habrochaites]		
Niben101Scf01623g16002.1	sp|Q9FGY1|BXL1_ARATH	***-	Beta-D-xylosidase 1	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026891 (Fibronectin type III-like domain), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02375g03009.1	sp|P36917|XYNA_THESA	*-*-	Endo-1,4-beta-xylanase A	IPR001000 (Glycoside hydrolase, family 10), IPR008979 (Galactose-binding domain-like), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf08127g08005.1	AT1G26190.1	*-*-	Phosphoribulokinase / Uridine kinase family LENGTH=674		
Niben101Scf04477g02006.1	sp|C6T1G0|CASP7_SOYBN	***-	CASP-like protein 7	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf18887g01001.1			Unknown protein		
Niben101Scf07522g00012.1	sp|Q9FM19|HIR1_ARATH	***-	Hypersensitive-induced response protein 1	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf05321g04007.1	sp|Q2KIG2|WDR5_BOVIN	*-*-	WD repeat-containing protein 5	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR011990 (Tetratricopeptide-like helical domain), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf06980g00003.1	sp|Q9SFU1|R13A1_ARATH	****	60S ribosomal protein L13a-1	IPR005822 (Ribosomal protein L13), IPR023564 (Ribosomal protein L13 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf02363g00010.1	AT3G13870.1	****	Root hair defective 3 GTP-binding protein (RHD3) LENGTH=802	IPR008803 (RHD3/Sey1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00927g02017.1	sp|Q55512|DHAS_SYNY3	****	Aspartate-semialdehyde dehydrogenase	IPR012080 (Aspartate-semialdehyde dehydrogenase), IPR016040 (NAD(P)-binding domain)	GO:0003942 (N-acetyl-gamma-glutamyl-phosphate reductase activity), GO:0004073 (aspartate-semialdehyde dehydrogenase activity), GO:0005737 (cytoplasm), GO:0008652 (cellular amino acid biosynthetic process), GO:0009086 (methionine biosynthetic process), GO:0009088 (threonine biosynthetic process), GO:0009089 (lysine biosynthetic process via diaminopimelate), GO:0009097 (isoleucine biosynthetic process), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0046983 (protein dimerization activity), GO:0050661 (NADP binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08724g00005.1	sp|D4DE65|MAP2_TRIVH	****	Methionine aminopeptidase 2	IPR001714 (Peptidase M24, methionine aminopeptidase), IPR004545 (Proliferation-associated protein 1), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0004177 (aminopeptidase activity), GO:0006508 (proteolysis), GO:0008235 (metalloexopeptidase activity)
Niben101Scf02354g04007.1	sp|Q8LGU1|AB8C_ARATH	*-*-	ABC transporter C family member 8	IPR011527 (ABC transporter type 1, transmembrane domain)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf04421g00002.1	sp|Q9LYZ9|PP362_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04993g06002.1	AT5G60700.1	*-*-	glycosyltransferase family protein 2 LENGTH=668		
Niben101Scf03271g02022.1	AT5G55580.1	****	Mitochondrial transcription termination factor family protein LENGTH=496	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07788g01013.1	emb|CDY50122.1|	***-	BnaC04g32570D [Brassica napus]		
Niben101Scf02656g04004.1	sp|Q9MTJ3|RPOA_OENEH	*-*-	DNA-directed RNA polymerase subunit alpha	IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05262g00020.1	AT1G48480.1	*-**	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02503g00004.1	emb|CDX81975.1|	***-	BnaC08g36260D [Brassica napus]	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf05486g00005.1	sp|Q61116|ZN235_MOUSE	--*-	Zinc finger protein 235	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf09654g03006.1	sp|P40267|H1_SOLPN	*-*-	Histone H1	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR020478 (AT hook-like)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf08006g01001.1	sp|Q6UN15|FIP1_HUMAN	*-*-	Pre-mRNA 3'-end-processing factor FIP1	IPR007854 (Pre-mRNA polyadenylation factor Fip1)	
Niben101Scf03460g07004.1	gb|KEH38450.1|	*-*-	disease resistance protein (CC-NBS-LRR class) family protein [Medicago truncatula]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf02466g01016.1	sp|Q39459|MT2_CICAR	*-*-	Metallothionein-like protein 2	IPR000347 (Metallothionein, family 15, plant)	GO:0046872 (metal ion binding)
Niben101Scf02182g02007.1	sp|O49118|H2B_CAPAN	*-*-	Histone H2B	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf01035g05015.1			Unknown protein		
Niben101Scf00052g08003.1	sp|A2XDG4|UBP26_ORYSI	*-**	Ubiquitin carboxyl-terminal hydrolase 26	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf17301g00001.1	sp|Q17R06|RAB21_BOVIN	--*-	Ras-related protein Rab-21	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02164g02001.1	AT1G20990.1	***-	Cysteine/Histidine-rich C1 domain family protein LENGTH=319	IPR011424 (C1-like)	GO:0047134 (protein-disulfide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00934g00004.1	sp|O48557|RL17_MAIZE	*-**	60S ribosomal protein L17	IPR001063 (Ribosomal protein L22/L17)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf01384g01001.1	AT2G37870.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=115	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02929g01005.1	emb|CDY17575.1|	--*-	BnaC01g26990D [Brassica napus]		
Niben101Scf05109g01006.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf01971g01005.1	AT1G73260.1	*-**	kunitz trypsin inhibitor 1 LENGTH=215	IPR002160 (Proteinase inhibitor I3, Kunitz legume)	GO:0004866 (endopeptidase inhibitor activity)
Niben101Ctg16070g00008.1	emb|CDY12195.1|	***-	BnaC04g12250D [Brassica napus]	IPR010471 (Protein of unknown function DUF1068)	
Niben101Scf03479g00010.1	AT3G25160.1	****	ER lumen protein retaining receptor family protein LENGTH=272	IPR000133 (ER lumen protein retaining receptor)	GO:0006621 (protein retention in ER lumen), GO:0016021 (integral component of membrane), GO:0046923 (ER retention sequence binding)
Niben101Scf00713g01012.1	sp|Q3TLD5|RMP_MOUSE	*-*-	Unconventional prefoldin RPB5 interactor	IPR009053 (Prefoldin)	
Niben101Scf03735g06006.1	sp|P40267|H1_SOLPN	***-	Histone H1	IPR005819 (Histone H5)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf00290g01013.1			Unknown protein		
Niben101Scf35487g00005.1	AT2G41100.1	****	Calcium-binding EF hand family protein LENGTH=324	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00885g11002.1	sp|Q8LF89|GRXC8_ARATH	***-	Glutaredoxin-C8	IPR011905 (Glutaredoxin-like, plant II), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf02762g01001.1	sp|Q9FLJ2|NC100_ARATH	***-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09427g01013.1	ref|XP_007039411.1|	*-*-	Zinc finger matrin-type protein 1, putative isoform 1 [Theobroma cacao] gb|EOY23912.1| Zinc finger matrin-type protein 1, putative isoform 1 [Theobroma cacao]		
Niben101Scf06261g00003.1	sp|Q5M786|WDR5_XENTR	*-*-	WD repeat-containing protein 5	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf03448g00012.1	AT1G15740.1	***-	Leucine-rich repeat family protein LENGTH=585	IPR001611 (Leucine-rich repeat), IPR006553 (Leucine-rich repeat, cysteine-containing subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf06761g00018.1	sp|P48000|KNAT3_ARATH	***-	Homeobox protein knotted-1-like 3	IPR005539 (ELK), IPR005540 (KNOX1), IPR005541 (KNOX2), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00395g02020.1	sp|P59280|KLHL8_MOUSE	*-*-	Kelch-like protein 8	IPR013989 (Development/cell death domain), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf03964g04009.1	ref|NP_001078225.1|	-**-	ECA1 gametogenesis related family protein [Arabidopsis thaliana] gb|AEE77614.1| uncharacterized protein [Arabidopsis thaliana]	IPR008502 (Prolamin-like domain)	
Niben101Scf02564g14011.1	AT5G49650.1	***-	xylulose kinase-2 LENGTH=558	IPR018484 (Carbohydrate kinase, FGGY, N-terminal), IPR018485 (Carbohydrate kinase, FGGY, C-terminal)	GO:0005975 (carbohydrate metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf12045g06002.1	sp|B7MTI7|YCEA_ECO81	--*-	UPF0176 protein YceA	IPR001763 (Rhodanese-like domain)	
Niben101Scf03930g05040.1	sp|Q66IF1|REEP6_DANRE	*-*-	Receptor expression-enhancing protein 6	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf08526g04003.1	AT4G09670.1	****	Oxidoreductase family protein LENGTH=362	IPR004104 (Oxidoreductase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf22469g00004.1	AT1G11610.2	*-*-	cytochrome P450, family 71, subfamily A, polypeptide 18 LENGTH=504	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03670g02006.1	sp|Q9XEF0|BH051_ARATH	*-*-	Transcription factor bHLH51	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf17973g00001.1	sp|A4YB19|PRMA_SHEPC	*-**	Ribosomal protein L11 methyltransferase	IPR010456 (Ribosomal L11 methyltransferase, PrmA), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005737 (cytoplasm), GO:0006479 (protein methylation), GO:0008276 (protein methyltransferase activity)
Niben101Scf03952g02006.1	sp|Q93ZR6|WSD1_ARATH	*-**	O-acyltransferase WSD1	IPR009721 (O-acyltransferase, WSD1, C-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity)
Niben101Scf02700g01010.1			Unknown protein		
Niben101Scf00552g00025.1	sp|P49637|R27A3_ARATH	***-	60S ribosomal protein L27a-3		
Niben101Scf09232g00005.1	AT1G06920.1	*-*-	ovate family protein 4 LENGTH=315	IPR006458 (Ovate  protein family, C-terminal), IPR025830 (DNA-binding domain, ovate family-like)	GO:0003677 (DNA binding)
Niben101Scf07687g01006.1	ref|XP_007035232.1|	***-	Family of Uncharacterized protein function, putative [Theobroma cacao] gb|EOY06158.1| Family of Uncharacterized protein function, putative [Theobroma cacao]	IPR006904 (Protein of unknown function DUF716 (TMEM45))	
Niben101Scf02778g03013.1	emb|CAH67653.1|	*-*-	[Oryza sativa Indica Group]	IPR022251 (Protein of unknown function wound-induced)	
Niben101Ctg07375g00004.1	sp|Q9FJN9|PABN2_ARATH	*-*-	Polyadenylate-binding protein 2		
Niben101Scf00381g07022.1	sp|Q802A6|STK4_SQUAC	*-**	Serine/threonine-protein kinase 3/4	IPR006567 (PUG domain), IPR010513 (KEN domain), IPR011009 (Protein kinase-like domain), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily)	GO:0004540 (ribonuclease activity), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006397 (mRNA processing), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02839g01001.1	sp|Q9D554|SF3A3_MOUSE	***-	Splicing factor 3A subunit 3	IPR000690 (Zinc finger, C2H2-type matrin), IPR021966 (Splicing factor SF3a60 binding domain), IPR024598 (Domain of unknown function DUF3449)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf00199g05032.1	sp|A5G6F4|HLDE_GEOUR	*-*-	Bifunctional protein HldE	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process)
Niben101Scf02441g04008.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04829g01003.1	sp|P24806|XTH24_ARATH	****	Xyloglucan endotransglucosylase/hydrolase protein 24	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01304g11004.1			Unknown protein		
Niben101Scf02831g02032.1	sp|Q9LTR9|NMT1_ARATH	*-**	Glycylpeptide N-tetradecanoyltransferase 1	IPR000903 (Myristoyl-CoA:protein N-myristoyltransferase)	GO:0004379 (glycylpeptide N-tetradecanoyltransferase activity), GO:0006499 (N-terminal protein myristoylation)
Niben101Scf04801g00017.1	sp|Q3BYM7|UBIA_XANC5	***-	4-hydroxybenzoate octaprenyltransferase	IPR000537 (UbiA prenyltransferase family)	GO:0004659 (prenyltransferase activity), GO:0016021 (integral component of membrane)
Niben101Scf04123g01014.1	AT3G56420.1	***-	Thioredoxin superfamily protein LENGTH=154	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03041g00002.1	sp|Q9FJU9|E1313_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 13	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01582g01006.1	sp|Q9JLK4|CABP2_MOUSE	--**	Calcium-binding protein 2	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf04327g02031.1	sp|Q9S836|LAX2_ARATH	*-*-	Auxin transporter-like protein 2		
Niben101Scf23427g00004.1	AT5G18290.1	***-	Aquaporin-like superfamily protein LENGTH=243	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf08621g05004.1	sp|O14218|YPI1_SCHPO	--*-	Type 1 phosphatases regulator ypi1	IPR011107 (Protein phosphatase inhibitor)	
Niben101Scf01956g10006.1	AT4G14420.1	***-	HR-like lesion-inducing protein-related LENGTH=158	IPR008637 (HR-like lesion-inducer)	
Niben101Scf00807g02005.1	emb|CDY62977.1|	***-	BnaCnng41180D [Brassica napus]		
Niben101Scf01639g07001.1	sp|Q9BRH9|ZN251_HUMAN	*-*-	Zinc finger protein 251	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf17473g00002.1	sp|Q9W4D2|RNP4F_DROME	--**	RNA-binding protein 4F	IPR001876 (Zinc finger, RanBP2-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf05932g01003.1	emb|CDY61112.1|	***-	BnaA06g39450D [Brassica napus]		
Niben101Scf07051g00001.1	ref|WP_002723361.1|	--*-	plasmid stablization protein ParB [Rhodobacter sphaeroides] gb|EGJ19707.1| hypothetical protein RSWS8N_16144 [Rhodobacter sphaeroides WS8N]		
Niben101Scf05106g00015.1	ref|XP_007044607.1|	*-*-	Acyl-CoA N-acyltransferases (NAT) superfamily protein, putative isoform 3 [Theobroma cacao] gb|EOY00439.1| Acyl-CoA N-acyltransferases (NAT) superfamily protein, putative isoform 3 [Theobroma cacao]		
Niben101Scf00725g04003.1	sp|Q5F3L4|DEN6A_CHICK	*-*-	Protein DENND6A	IPR024224 (DENND6)	
Niben101Scf00131g00008.1	AT1G65710.1	*-*-	unknown protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=455		
Niben101Scf06326g00036.1	sp|Q8N1E6|FXL14_HUMAN	***-	F-box/LRR-repeat protein 14	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf10927g00030.1	emb|CDY31976.1|	*-*-	BnaA07g00190D [Brassica napus]		
Niben101Scf09127g01007.1	AT1G63700.1	*-*-	Protein kinase superfamily protein LENGTH=883	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03894g02020.1	AT5G41950.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=565	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf25043g00002.1	sp|P81392|MYB06_ANTMA	*-*-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf10067g02018.1	sp|Q76LC6|RBM24_DANRE	*-**	RNA-binding protein 24	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07070g02001.1	sp|Q9LFT1|TBL21_ARATH	***-	Protein trichome birefringence-like 21	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf06562g01010.1	AT5G50150.1	***-	Protein of Unknown Function (DUF239) LENGTH=420	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf02766g01004.1	sp|Q9SUY0|FB244_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf02418g00006.1	sp|Q9SKQ4|PP167_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04114g01044.1			Unknown protein		
Niben101Scf00187g01006.1	sp|A3CKU4|DPO4_STRSV	*-**	DNA polymerase IV	IPR001126 (DNA-repair protein, UmuC-like)	GO:0003684 (damaged DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006281 (DNA repair)
Niben101Scf01510g00001.1	sp|P93227|FNTA_SOLLC	***-	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	IPR002088 (Protein prenyltransferase, alpha subunit)	GO:0008318 (protein prenyltransferase activity), GO:0018342 (protein prenylation)
Niben101Scf03018g19008.1	sp|Q7N288|FADJ_PHOLL	*-*-	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03255g00025.1	AT5G47710.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=166	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf10250g00003.1	ref|XP_007018277.1|	--*-	HVA22-like protein a, putative isoform 1 [Theobroma cacao] gb|EOY15502.1| HVA22-like protein a, putative isoform 1 [Theobroma cacao]		
Niben101Scf15920g00003.1	sp|Q83M39|AES_SHIFL	--*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf00980g02008.1	gb|ADV15953.1|	*-*-	maturase, partial (mitochondrion) [Syringa vulgaris]	IPR000477 (Reverse transcriptase domain)	
Niben101Scf00963g02014.1	sp|Q9LYN8|EXS_ARATH	***-	Leucine-rich repeat receptor protein kinase EXS	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf01481g03007.1	sp|Q8RYM9|LAC2_ORYSJ	***-	Laccase-2	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf14939g01001.1	gb|ABN06016.1|	-**-	Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf14591g00012.1	sp|Q9LXZ3|FB204_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01463g00024.1	AT3G20240.1	***-	Mitochondrial substrate carrier family protein LENGTH=348	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf09910g00003.1	sp|Q9SFF9|GL17_ARATH	***-	Germin-like protein subfamily 1 member 7	IPR014710 (RmlC-like jelly roll fold)	GO:0045735 (nutrient reservoir activity)
Niben101Scf11496g02003.1	sp|Q9LJN8|BUB31_ARATH	*-*-	Mitotic checkpoint protein BUB3.1		
Niben101Scf01412g00015.1	sp|O81822|HS177_ARATH	***-	17.7 kDa class II heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf07728g01020.1	sp|Q8W4J9|RPP8_ARATH	*-*-	Disease resistance protein RPP8		
Niben101Scf17973g00003.1	emb|CDX96261.1|	*-*-	BnaC02g13900D [Brassica napus]		
Niben101Scf02577g03004.1	sp|P93835|DRE1B_ARATH	--*-	Dehydration-responsive element-binding protein 1B		
Niben101Scf16197g02011.1	gb|AEH25587.1|	*-*-	transposase [Solanum demissum]		
Niben101Scf01526g09011.1	sp|Q8H960|TOM2B_ARATH	*-*-	Tobamovirus multiplication protein 2B		
Niben101Scf01436g02003.1	sp|Q9SHD1|EXPB4_ARATH	***-	Expansin-B4	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region)
Niben101Scf06437g04010.1	sp|Q14498|RBM39_HUMAN	--**	RNA-binding protein 39	IPR001878 (Zinc finger, CCHC-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf07457g01013.1	sp|Q851L5|ILL3_ORYSJ	*-*-	IAA-amino acid hydrolase ILR1-like 3	IPR011650 (Peptidase M20, dimerisation domain)	
Niben101Scf09548g00013.1	sp|Q9FL16|PER63_ARATH	****	Peroxidase 63	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06823g02015.1	AT4G33920.1	****	Protein phosphatase 2C family protein LENGTH=380	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf05921g03004.1			Unknown protein		
Niben101Ctg15729g00005.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04159g01016.1	AT1G32740.1	****	SBP (S-ribonuclease binding protein) family protein LENGTH=312	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017066 (S-ribonuclease binding protein, SBP1, pollen)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01663g01004.1	sp|B6EJA3|TRPB_ALISL	--*-	Tryptophan synthase beta chain		
Niben101Scf01615g01017.1	sp|Q5T1Q4|S35F1_HUMAN	*-*-	Solute carrier family 35 member F1	IPR009262 (Solute carrier family 35 member SLC35F1/F2/F6)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf03969g02001.1	AT4G14090.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=456	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00878g00002.1	sp|Q9ZTA1|AOP3C_ARATH	*-**	2-oxoglutarate-dependent dioxygenase AOP3	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03308g00006.1	sp|Q41916|CYT5_ARATH	****	Cysteine proteinase inhibitor 5	IPR000010 (Proteinase inhibitor I25, cystatin), IPR027214 (Cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf04327g02030.1	sp|P45434|SSRA_ARATH	***-	Translocon-associated protein subunit alpha	IPR005595 (Translocon-associated protein (TRAP), alpha subunit)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf01111g00002.1	emb|CDY26569.1|	--*-	BnaA09g47080D [Brassica napus]		
Niben101Scf02816g10005.1	AT3G12340.1	***-	FKBP-like peptidyl-prolyl cis-trans isomerase family protein LENGTH=499	IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	
Niben101Scf04028g02018.1	sp|Q9FJT8|HATB_ARATH	****	Histone acetyltransferase type B catalytic subunit	IPR017380 (Histone acetyltransferase type B, catalytic subunit)	GO:0004402 (histone acetyltransferase activity), GO:0005634 (nucleus), GO:0006348 (chromatin silencing at telomere), GO:0006355 (regulation of transcription, DNA-templated), GO:0016568 (chromatin modification), GO:0016573 (histone acetylation), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02720g01003.1	AT1G12990.1	****	beta-1,4-N-acetylglucosaminyltransferase family protein LENGTH=392	IPR006813 (Glycosyl transferase, family 17)	GO:0003830 (beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity), GO:0006487 (protein N-linked glycosylation), GO:0016020 (membrane)
Niben101Scf06508g01002.1	sp|Q8RVL2|DEK1_ARATH	*-*-	Calpain-type cysteine protease DEK1		
Niben101Scf03282g05005.1	sp|O04291|ATB14_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-14	IPR013978 (MEKHLA)	
Niben101Scf01084g02006.1	sp|Q5VRJ8|PX115_ORYSJ	****	Peroxisomal membrane protein 11-5	IPR008733 (Peroxisomal biogenesis factor 11)	GO:0005779 (integral component of peroxisomal membrane), GO:0016559 (peroxisome fission)
Niben101Scf01191g04002.1	sp|Q9LZB2|GDL74_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf05449g03006.1	sp|Q4ZWR6|LPXA_PSEU2	***-	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase	IPR011004 (Trimeric LpxA-like), IPR029098 (Udp N-acetylglucosamine O-acyltransferase, C-terminal)	
Niben101Scf01090g03018.1	sp|Q9XHP0|11S2_SESIN	***-	11S globulin seed storage protein 2	IPR006044 (11-S seed storage protein, plant)	GO:0045735 (nutrient reservoir activity)
Niben101Scf06674g00003.1	sp|P46423|GSTF_HYOMU	*-*-	Glutathione S-transferase	IPR010987 (Glutathione S-transferase, C-terminal-like)	
Niben101Scf08621g00008.1	sp|B0XMV6|MPH1_ASPFC	*-**	ATP-dependent DNA helicase mph1	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0016787 (hydrolase activity)
Niben101Scf01694g12008.1	AT2G29680.1	*-*-	cell division control 6 LENGTH=539	IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf06385g00018.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf00028g03008.1	AT3G22540.1	***-	Protein of unknown function (DUF1677) LENGTH=110	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf03952g01003.1			Unknown protein		
Niben101Scf13398g00001.1	gb|AES68820.2|	--*-	nucleic acid-binding,-like fold-protein [Medicago truncatula]	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf01459g01003.1	sp|O24457|ODPA3_ARATH	*-*-	Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic		
Niben101Scf03624g07013.1	AT5G26780.3	****	serine hydroxymethyltransferase 2 LENGTH=533	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf09334g04009.1	AT3G17840.1	****	receptor-like kinase 902 LENGTH=647	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03628g07004.1	sp|Q9SIN2|TBL39_ARATH	*-*-	Protein trichome birefringence-like 39	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf08895g01016.1	gb|AAG24616.1|AF298594_1	*-*-	arabinogalactan protein [Nicotiana alata]		
Niben101Scf01369g00018.1	AT1G76430.1	****	phosphate transporter 1;9 LENGTH=532	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01226g02017.1	sp|Q6EP49|MAD27_ORYSJ	****	MADS-box transcription factor 27	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf04792g02006.1	ref|NP_001044366.2|	--*-	[Oryza sativa Japonica Group] dbj|BAF06280.2| [Oryza sativa Japonica Group]		
Niben101Scf01073g03007.1	emb|CDY27635.1|	***-	BnaA09g27720D [Brassica napus]		
Niben101Scf02778g03014.1	AT5G54280.2	*-**	myosin 2 LENGTH=1220	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf19230g01001.1	sp|Q9LUC2|PP231_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf07298g00006.1	sp|Q0W1W4|KAD_UNCMA	****	Adenylate kinase	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004017 (adenylate kinase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0016776 (phosphotransferase activity, phosphate group as acceptor), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf01658g01010.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02164g02003.1	sp|P20866|CB2_PHYPA	***-	Chlorophyll a-b binding protein, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf06799g04001.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05712g02012.1	AT1G14020.1	***-	O-fucosyltransferase family protein LENGTH=499	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Ctg15851g00002.1	AT5G16990.1	****	Zinc-binding dehydrogenase family protein LENGTH=343	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR011032 (GroES (chaperonin 10)-like), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01685g09002.1	sp|Q9LSQ6|PBP1_ARATH	****	Calcium-binding protein PBP1	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf06942g02009.1	sp|B0Z4M6|RPOC1_OENAR	*-*-	DNA-directed RNA polymerase subunit beta'		
Niben101Scf01166g05001.1	sp|P0CT30|SGT2_USTMA	*-*-	Small glutamine-rich tetratricopeptide repeat-containing protein 2	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04081g00002.1	AT5G40190.1	***-	RNA ligase/cyclic nucleotide phosphodiesterase family protein LENGTH=183	IPR009097 (RNA ligase/cyclic nucleotide phosphodiesterase)	
Niben101Scf10807g01003.1	AT1G23280.1	*-*-	MAK16 protein-related LENGTH=303	IPR006958 (Mak16 protein)	
Niben101Scf06782g01011.1	sp|C5D3F4|DER_GEOSW	***-	GTPase Der	IPR005225 (Small GTP-binding protein domain), IPR016484 (GTP-binding protein EngA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf00960g14004.1	AT3G47490.1	****	HNH endonuclease LENGTH=234	IPR003615 (HNH nuclease)	GO:0003676 (nucleic acid binding), GO:0004519 (endonuclease activity)
Niben101Scf07564g01020.1	sp|Q5LGR6|RL27_BACFN	***-	50S ribosomal protein L27	IPR001684 (Ribosomal protein L27)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10528g03003.1	sp|Q8LLE5|FPP_SOLLC	*-*-	Filament-like plant protein	IPR008587 (Filament-like plant protein)	
Niben101Scf07035g01010.1	AT1G08470.1	*-*-	strictosidine synthase-like 3 LENGTH=390	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf00854g08022.1	ref|XP_002519967.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF42415.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03842g09017.1	sp|P92985|RBP1C_ARATH	****	Ran-binding protein 1 homolog c	IPR011993 (Pleckstrin homology-like domain)	GO:0046907 (intracellular transport)
Niben101Scf01062g06003.1	sp|Q9VFS8|PSMD9_DROME	***-	26S proteasome non-ATPase regulatory subunit 9	IPR001478 (PDZ domain)	GO:0005515 (protein binding)
Niben101Scf07147g03002.1	AT3G13170.1	****	Spo11/DNA topoisomerase VI, subunit A protein LENGTH=362	IPR002815 (Spo11/DNA topoisomerase VI subunit A), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0000737 (DNA catabolic process, endonucleolytic), GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0006259 (DNA metabolic process)
Niben101Scf01209g05009.1	sp|P35336|PGLR_ACTDE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03350g03002.1			Unknown protein		
Niben101Scf08376g00012.1	AT1G75170.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=296	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf02756g00005.1	sp|Q08069|RS8_MAIZE	***-	40S ribosomal protein S8	IPR022309 (Ribosomal protein S8e/ribosomal biogenesis NSA2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06305g01015.1	AT2G46260.1	***-	BTB/POZ/Kelch-associated protein LENGTH=561	IPR008974 (TRAF-like), IPR011333 (BTB/POZ fold), IPR011705 (BTB/Kelch-associated)	GO:0005515 (protein binding)
Niben101Scf00851g06009.1	sp|Q9M907|PP217_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07797g03011.1	sp|Q9FZI8|LCAT1_ARATH	****	Lecithin-cholesterol acyltransferase-like 1	IPR003386 (Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process), GO:0008374 (O-acyltransferase activity)
Niben101Scf01617g00006.1	AT5G10270.1	****	cyclin-dependent kinase C;1 LENGTH=505	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00704g01018.1	ref|XP_002514962.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF47516.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03962g02001.1	ref|WP_033278396.1|	--*-	endonuclease [Streptomyces sp. NRRL F-525]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf07227g00010.1	gb|AET79022.1|	*-*-	At3g55060-like protein [Arabidopsis halleri]		
Niben101Scf02911g02004.1	gb|AGS78073.1|	*-*-	legume-specific protein [Aeschynomene indica]		
Niben101Scf02909g03002.1	AT4G17800.1	***-	Predicted AT-hook DNA-binding family protein LENGTH=292	IPR014476 (Predicted AT-hook DNA-binding)	
Niben101Scf08127g11003.1			Unknown protein		
Niben101Scf13556g00005.1	gb|AGF37241.1|	*-*-	APRR2-like protein, partial [Capsicum annuum]		
Niben101Scf07368g00011.1	dbj|BAF52858.1|	***-	repressor of silencing 3 [Nicotiana tabacum]	IPR011257 (DNA glycosylase), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal), IPR028924 (Permuted single zf-CXXC unit), IPR028925 (Demeter, RRM-fold domain)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair)
Niben101Scf03116g01003.1	sp|A8QB65|WDR12_BRUMA	****	Ribosome biogenesis protein WDR12 homolog	IPR012972 (NLE), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR028599 (WD repeat WDR12/Ytm1)	GO:0005515 (protein binding), GO:0042254 (ribosome biogenesis)
Niben101Scf00472g02019.1	sp|Q54UK0|PLDA_DICDI	*-**	Phospholipase D A	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0004630 (phospholipase D activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0046470 (phosphatidylcholine metabolic process)
Niben101Scf00487g06021.1	AT5G04590.1	****	sulfite reductase LENGTH=642	IPR005117 (Nitrite/Sulfite reductase ferredoxin-like domain), IPR006067 (Nitrite/sulphite reductase 4Fe-4S domain)	GO:0016491 (oxidoreductase activity), GO:0020037 (heme binding), GO:0051536 (iron-sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01888g04017.1	sp|Q8R3N1|NOP14_MOUSE	*-*-	Nucleolar protein 14	IPR005343 (Nucleolar complex protein 2), IPR007276 (Nucleolar protein 14)	GO:0032040 (small-subunit processome)
Niben101Scf02102g01016.1	AT1G12100.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=132	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf07025g00014.1	sp|Q91ZQ0|VMP1_RAT	***-	Vacuole membrane protein 1		
Niben101Scf17973g00015.1	sp|Q8DJN4|RS20_THEEB	--*-	30S ribosomal protein S20	IPR002583 (Ribosomal protein S20)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03337g06014.1	sp|P73548|CDSA_SYNY3	***-	Phosphatidate cytidylyltransferase	IPR000374 (Phosphatidate cytidylyltransferase)	GO:0016020 (membrane), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00130g01023.1	sp|Q0IIX9|TFP11_XENTR	***-	Tuftelin-interacting protein 11	IPR000467 (G-patch domain), IPR022159 (Tuftelin interacting protein, N-terminal domain), IPR022783 (GC-rich sequence DNA-binding factor domain)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04871g08015.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02236g06002.1	emb|CDY54282.1|	--*-	BnaC07g50840D [Brassica napus]		
Niben101Scf00854g11151.1	ref|WP_012874046.1|	--*-	alanyl-tRNA synthetase [Thermobaculum terrenum] ref|YP_003321833.1| alanyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798] gb|ACZ41011.1| alanyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]		
Niben101Scf07393g00006.1	AT1G69780.1	*-*-	Homeobox-leucine zipper protein family LENGTH=294	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf14662g00007.1	sp|O14647|CHD2_HUMAN	****	Chromodomain-helicase-DNA-binding protein 2	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR016197 (Chromo domain-like), IPR025260 (Domain of unknown function DUF4208), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf01671g02001.1	AT1G09660.1	****	RNA-binding KH domain-containing protein LENGTH=298	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf09432g00004.1	sp|P92962|PROT2_ARATH	***-	Proline transporter 2	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf05396g07008.1	sp|Q1IF69|LLDD_PSEE4	***-	L-lactate dehydrogenase	IPR012133 (Alpha-hydroxy acid dehydrogenase, FMN-dependent), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05919g04001.1	sp|Q08706|GBB_LYMST	*-**	Guanine nucleotide-binding protein subunit beta	IPR007148 (Small-subunit processome, Utp12), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01866g01012.1	sp|Q9ZU29|PP139_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf10328g00025.1	AT4G38040.1	***-	Exostosin family protein LENGTH=425	IPR004263 (Exostosin-like)	
Niben101Scf09445g04021.1	AT1G64650.1	***-	Major facilitator superfamily protein LENGTH=462	IPR008509 (Molybdate-anion transporter MOT2), IPR020846 (Major facilitator superfamily domain)	GO:0015098 (molybdate ion transmembrane transporter activity), GO:0015689 (molybdate ion transport), GO:0016021 (integral component of membrane)
Niben101Scf06349g02013.1	sp|Q9S9N9|CCR1_ARATH	****	Cinnamoyl-CoA reductase 1	IPR016040 (NAD(P)-binding domain)	GO:0003854 (3-beta-hydroxy-delta5-steroid dehydrogenase activity), GO:0006694 (steroid biosynthetic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf07773g00009.1	sp|O03376|AOX3_SOYBN	****	Alternative oxidase 3, mitochondrial	IPR002680 (Alternative oxidase)	GO:0009916 (alternative oxidase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00270g01014.1	sp|Q9MA41|CTL1_ARATH	****	Chitinase-like protein 1	IPR000726 (Glycoside hydrolase, family 19, catalytic), IPR023346 (Lysozyme-like domain)	GO:0004568 (chitinase activity), GO:0006032 (chitin catabolic process), GO:0016998 (cell wall macromolecule catabolic process)
Niben101Scf00428g11020.1	sp|Q39110|GAOX1_ARATH	***-	Gibberellin 20 oxidase 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf04240g03001.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00345g00006.1			Unknown protein		
Niben101Scf02422g01008.1	sp|Q9S7T8|SPZX_ARATH	***-	Serpin-ZX	IPR000215 (Serpin family), IPR023795 (Serpin, conserved site), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf05620g03013.1	sp|O48786|C734A_ARATH	--*-	Cytochrome P450 734A1	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08193g00020.1	sp|Q9C8Y6|FBD5_ARATH	--*-	FBD-associated F-box protein	IPR006566 (FBD domain)	
Niben101Scf11186g00001.1	sp|Q9M817|PTR6_ARATH	***-	Protein NRT1/ PTR FAMILY 1.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf06655g00009.1	ref|XP_007024873.1|	*-*-	Transducin/WD40 repeat-like superfamily protein, putative [Theobroma cacao] gb|EOY27495.1| Transducin/WD40 repeat-like superfamily protein, putative [Theobroma cacao]		
Niben101Scf05845g03009.1	sp|Q9V195|RS9_PYRAB	***-	30S ribosomal protein S9	IPR000754 (Ribosomal protein S9), IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01472g02001.1	sp|Q57242|UUP1_HAEIN	****	ABC transporter ATP-binding protein uup-1	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf03202g04015.1	sp|Q9LMP1|WAK2_ARATH	****	Wall-associated receptor kinase 2	IPR001881 (EGF-like calcium-binding domain), IPR009030 (Insulin-like growth factor binding protein, N-terminal), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf11936g01017.1	sp|O80786|MCM5_ARATH	****	DNA replication licensing factor MCM5	IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027925 (MCM N-terminal domain)	GO:0003677 (DNA binding), GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006270 (DNA replication initiation), GO:0042555 (MCM complex)
Niben101Scf02050g00010.1	gb|KEH24067.1|	*-*-	cactus-binding carboxy-terminal, cactin protein [Medicago truncatula]	IPR018816 (Cactin, central domain)	
Niben101Scf11996g00002.1	sp|Q9FHH8|COL5_ARATH	*-*-	Zinc finger protein CONSTANS-LIKE 5	IPR010402 (CCT domain)	GO:0005515 (protein binding)
Niben101Scf04555g00006.1	AT5G60720.1	***-	Protein of unknown function, DUF547 LENGTH=691	IPR006869 (Domain of unknown function DUF547), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	
Niben101Scf08167g00006.1			Unknown protein		
Niben101Scf01008g02005.1	AT1G28380.1	***-	MAC/Perforin domain-containing protein LENGTH=612	IPR020864 (Membrane attack complex component/perforin (MACPF) domain)	
Niben101Scf01602g06013.1			Unknown protein	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf09424g05003.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06611g00007.1	gb|KAK44454.1|	*-*-	NAD-dependent dehydratase [Burkholderia sp. MP-1]		
Niben101Scf11349g00005.1	emb|CDY21036.1|	*-*-	BnaA08g24890D [Brassica napus]	IPR008581 (Protein of unknown function DUF863, plant)	
Niben101Scf05048g00008.1	sp|Q39445|TBB_CICAR	*-*-	Tubulin beta chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf02989g02006.1	sp|Q8PVZ4|PRIS_METMA	--*-	DNA primase small subunit PriS		
Niben101Scf11137g01016.1	sp|Q9HJ83|DNAJ_THEAC	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf17947g01001.1	AT2G42900.1	***-	Plant basic secretory protein (BSP) family protein LENGTH=276	IPR007541 (Uncharacterised protein family, basic secretory protein)	
Niben101Scf07417g01019.1	sp|A6TGM3|FADA_KLEP7	***-	3-ketoacyl-CoA thiolase	IPR002155 (Thiolase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03004g00014.1			Unknown protein		
Niben101Scf05115g04003.1	sp|Q54DD0|AMPD_DICDI	--*-	AMP deaminase		
Niben101Scf17988g00007.1	emb|CDY11192.1|	***-	BnaA03g00280D [Brassica napus]	IPR025640 (Domain of unknown function DUF4339)	
Niben101Scf05363g04001.1	sp|Q9JK88|SPI2_MOUSE	***-	Serpin I2	IPR000215 (Serpin family), IPR023795 (Serpin, conserved site), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf09846g01010.1	sp|Q08257|QOR_HUMAN	****	Quinone oxidoreductase	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00508g09012.1	AT4G38900.1	****	Basic-leucine zipper (bZIP) transcription factor family protein LENGTH=553	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf10560g00003.1	sp|Q9ZVL3|NFYC3_ARATH	*-*-	Nuclear transcription factor Y subunit C-3	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf00021g01016.1	sp|Q9SEZ1|ZHD11_ARATH	***-	Zinc-finger homeodomain protein 11	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf17360g00006.1	emb|CDY07787.1|	*-*-	BnaA03g17240D [Brassica napus]		
Niben101Scf06506g02015.1	gb|AAU90303.2|	***-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf03856g06024.1	sp|Q9LTT3|HMG10_ARATH	***-	High mobility group B protein 10	IPR009071 (High mobility group box domain)	
Niben101Scf02156g06006.1	AT5G45160.1	****	Root hair defective 3 GTP-binding protein (RHD3) LENGTH=834	IPR008803 (RHD3/Sey1), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf08266g00005.1	sp|P34164|SIP2_YEAST	***-	SNF1 protein kinase subunit beta-2	IPR006828 (Association with the SNF1 complex (ASC) domain), IPR014756 (Immunoglobulin E-set), IPR030070 (SNF1-related protein kinase regulatory subunit beta-2)	GO:0005515 (protein binding)
Niben101Scf02298g01008.1	AT4G05220.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=226	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf00897g01007.1	sp|Q5E9N0|BYST_BOVIN	*-*-	Bystin	IPR007955 (Bystin)	
Niben101Scf01571g00002.1	sp|Q84MA2|IP5P1_ARATH	*-*-	Type I inositol 1,4,5-trisphosphate 5-phosphatase 1	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf01961g02007.1	sp|Q9C519|WRKY6_ARATH	****	WRKY transcription factor 6	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08840g00008.1	ref|XP_010086541.1|	--**	Ethylene-responsive transcription factor [Morus notabilis] gb|AHJ25963.1| dehydration responsive element binding transcription factor [Morus notabilis] gb|EXB19758.1| Ethylene-responsive transcription factor [Morus notabilis]	IPR001471 (AP2/ERF domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09709g01003.1			Unknown protein		
Niben101Scf06000g04007.1	AT5G61230.1	***-	Ankyrin repeat family protein LENGTH=174	IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf02572g03004.1	ref|WP_017965293.1|	***-	LPS:glycosyltransferase [Rhizobium leguminosarum]	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf01418g01008.1	sp|P34885|KPC1B_CAEEL	*-**	Protein kinase C-like 1B	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01569g04006.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11383g02009.1	AT5G11000.1	***-	Plant protein of unknown function (DUF868) LENGTH=389	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf00304g05002.1	sp|P0CC70|NU2C1_HELAN	*-*-	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic		
Niben101Scf02576g00012.1	sp|Q9ZUH5|SDR2B_ARATH	****	Short-chain dehydrogenase/reductase 2b	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf04994g00019.1	ref|XP_002535856.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01745g05010.1	sp|Q5QM99|RL37A_ORYSJ	***-	60S ribosomal protein L37a	IPR002674 (Ribosomal protein L37ae), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00634g04004.1	AT1G20330.1	****	sterol methyltransferase 2 LENGTH=361	IPR013705 (Sterol methyltransferase C-terminal), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006694 (steroid biosynthetic process), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf02929g06021.1	ref|XP_002536345.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26037.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00063g13005.1	AT3G47520.1	****	malate dehydrogenase LENGTH=403	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf01167g05014.1	sp|Q66HG1|DMTF1_RAT	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04400g01012.1	AT1G13920.1	*-*-	Remorin family protein LENGTH=345	IPR005516 (Remorin, C-terminal)	
Niben101Scf03215g01006.1	sp|Q9LTM7|C71BG_ARATH	*-*-	Cytochrome P450 71B16	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02195g07003.1	AT4G17900.1	***-	PLATZ transcription factor family protein LENGTH=227	IPR000315 (Zinc finger, B-box), IPR006734 (Protein of unknown function DUF597)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf03515g00071.1	sp|P46903|NATA_BACSU	-***	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf07549g02003.1	sp|F4K4J0|THO5B_ARATH	***-	THO complex subunit 5B	IPR019163 (THO complex, subunit 5)	
Niben101Scf05044g03012.1	ref|XP_002516082.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46502.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00149g02001.1	sp|Q9FFF5|ALFL1_ARATH	***-	PHD finger protein ALFIN-LIKE 1	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR021998 (Alfin)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0042393 (histone binding)
Niben101Scf06204g00005.1	AT5G55530.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=405	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf07508g02004.1	sp|Q9FLJ2|NC100_ARATH	***-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09554g02023.1	AT5G39380.1	*-**	Plant calmodulin-binding protein-related LENGTH=507	IPR012417 (Calmodulin-binding domain, plant)	GO:0005516 (calmodulin binding)
Niben101Scf13622g00001.1	sp|Q0KL01|UBX2B_MOUSE	***-	UBX domain-containing protein 2B	IPR012989 (SEP domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf07103g01023.1			Unknown protein		
Niben101Scf04270g00001.1	AT5G23870.3	***-	Pectinacetylesterase family protein LENGTH=451	IPR004963 (Protein notum homologue)	
Niben101Scf03028g02003.1			Unknown protein		
Niben101Scf04788g00006.1	sp|Q9M667|RPP13_ARATH	--*-	Disease resistance protein RPP13	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Ctg14272g00004.1	sp|Q9H501|ESF1_HUMAN	*-*-	ESF1 homolog		
Niben101Scf02253g05003.1	sp|Q0A8Z4|LEPA_ALKEH	*-*-	Elongation factor 4	IPR000640 (Translation elongation factor EFG, V domain), IPR009022 (Elongation factor G, III-V domain), IPR013842 (GTP-binding protein LepA, C-terminal)	
Niben101Scf11756g03011.1	ref|XP_007022164.1|	*-*-	Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao] gb|EOY13689.1| Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]		
Niben101Scf01240g07001.1	sp|Q02921|NO93_SOYBN	***-	Early nodulin-93	IPR005050 (Early nodulin 93 ENOD93 protein)	
Niben101Scf04446g00002.1	gb|ABV21218.1|	--*-	[Arabidopsis thaliana]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf00854g08064.1			Unknown protein		
Niben101Scf18652g00015.1			Unknown protein		
Niben101Scf00096g05005.1	sp|Q9FRG8|GRF9_ORYSJ	--*-	Growth-regulating factor 9	IPR014977 (WRC)	
Niben101Scf08723g02020.1	sp|P83332|TLP1_PRUPE	***-	Thaumatin-like protein 1	IPR001938 (Thaumatin)	
Niben101Scf00577g02003.1	ref|WP_015172339.1|	*-**	rib PSRP-3/Ycf65 [Geitlerinema sp. PCC 7407]	IPR006924 (Ribosomal protein PSRP-3/Ycf65)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02929g05038.1			Unknown protein		
Niben101Scf04113g05009.1			Unknown protein		
Niben101Scf06906g01013.1	sp|Q87S28|ISCS_VIBPA	****	Cysteine desulfurase IscS	IPR015424 (Pyridoxal phosphate-dependent transferase), IPR016454 (Cysteine desulfurase, NifS)	GO:0003824 (catalytic activity), GO:0006534 (cysteine metabolic process), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding), GO:0031071 (cysteine desulfurase activity)
Niben101Scf07677g00006.1	AT3G06240.1	***-	F-box family protein LENGTH=427	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf02589g06013.1	AT1G02400.1	***-	gibberellin 2-oxidase 6 LENGTH=329	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02003g01007.1	AT1G73190.1	***-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05230g02018.1	sp|Q9LY84|GDL76_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf05118g08003.1	AT1G63800.1	*-*-	ubiquitin-conjugating enzyme 5 LENGTH=185	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf01179g00006.1	tpg|DAA45939.1|	*-*-	TPA: hypothetical protein ZEAMMB73_240931 [Zea mays]		
Niben101Ctg11026g00001.1			Unknown protein		
Niben101Scf13387g00016.1	AT1G03920.1	****	Protein kinase family protein LENGTH=569	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04664g01015.1	sp|O49255|NAC29_ARATH	--**	NAC transcription factor 29	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00682g02010.1	sp|O81004|Y2287_ARATH	****	GTP-binding protein	IPR006073 (GTP binding domain), IPR019987 (GTP-binding protein, ribosome biogenesis, YsxC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000917 (barrier septum assembly), GO:0005525 (GTP binding)
Niben101Scf08198g00007.1	sp|A6L6E8|MNME_BACV8	--*-	tRNA modification GTPase MnmE	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf24358g00004.1	ref|XP_002875050.1|	*-*-	plastid-lipid associated protein pap [Arabidopsis lyrata subsp. lyrata] gb|EFH51309.1| plastid-lipid associated protein pap [Arabidopsis lyrata subsp. lyrata]	IPR006843 (Plastid lipid-associated protein/fibrillin conserved domain)	
Niben101Scf06347g01003.1	sp|F4KBW6|NU205_ARATH	****	Nuclear pore complex protein NUP205	IPR021827 (Nucleoporin Nup186/Nup192/Nup205)	GO:0005643 (nuclear pore)
Niben101Scf10032g01005.1			Unknown protein		
Niben101Scf11469g00017.1	AT1G67710.1	*-*-	response regulator 11 LENGTH=521	IPR010402 (CCT domain), IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system), GO:0005515 (protein binding)
Niben101Scf01100g04008.1	sp|P41216|ACSL1_MOUSE	***-	Long-chain-fatty-acid--CoA ligase 1	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf17839g04003.1	AT3G02800.1	****	Tyrosine phosphatase family protein LENGTH=203	IPR004861 (Protein-tyrosine phosphatase, SIW14-like), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf03374g05004.1	AT1G62770.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=204	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00239g03020.1			Unknown protein		
Niben101Scf04802g01012.1	sp|Q9PW71|DUS4_CHICK	*-**	Dual specificity protein phosphatase 4	IPR007122 (Villin/Gelsolin), IPR024950 (Dual specificity phosphatase), IPR029006 (ADF-H/Gelsolin-like domain), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0003779 (actin binding), GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf13710g03016.1	AT2G18600.1	***-	Ubiquitin-conjugating enzyme family protein LENGTH=185	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf01795g16011.1			Unknown protein		
Niben101Scf05343g02015.1	sp|Q32PL8|PRIPO_DANRE	*-**	DNA-directed primase/polymerase protein	IPR004340 (DNA primase, UL52/UL70 type, Herpesviridae)	GO:0003896 (DNA primase activity), GO:0006260 (DNA replication)
Niben101Scf09475g01019.1	sp|P80387|AAKB1_PIG	--*-	5'-AMP-activated protein kinase subunit beta-1	IPR014756 (Immunoglobulin E-set)	
Niben101Scf01415g03009.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf02175g04012.1	AT2G46750.1	*-*-	D-arabinono-1,4-lactone oxidase family protein LENGTH=591		
Niben101Scf00773g10003.1	gb|AAM47025.1|	--*-	nam-like protein 1 [Petunia x hybrida]		
Niben101Scf00488g04027.1	sp|Q9SSG3|HIPL1_ARATH	*-*-	HIPL1 protein		
Niben101Scf02349g00005.1	emb|CAE03561.2|	*-*-	OsJ_16109 [Oryza sativa Japonica Group]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf06344g01003.1	AT2G36770.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf07086g00019.1	sp|A8Z5X0|MNME_SULMW	--*-	tRNA modification GTPase MnmE	IPR005690 (Chloroplast protein import component Toc86/159), IPR024283 (Domain of unknown function DUF3406, chloroplast translocase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides)
Niben101Scf06583g02002.1	sp|Q42564|APX3_ARATH	*-**	L-ascorbate peroxidase 3, peroxisomal	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00428g16006.1	sp|Q9LD45|BI1_ARATH	***-	Bax inhibitor 1	IPR006214 (Bax inhibitor 1-related)	
Niben101Scf07223g02009.1	sp|Q9ZUU0|WRK44_ARATH	****	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00454g05005.1	sp|A0RL94|ATPE_BACAH	*-**	ATP synthase epsilon chain	IPR001469 (ATPase, F1 complex, delta/epsilon subunit)	GO:0015986 (ATP synthesis coupled proton transport), GO:0045261 (proton-transporting ATP synthase complex, catalytic core F(1)), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf13821g00012.1	sp|Q7XWU8|EXPA1_ORYSJ	***-	Expansin-A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf03937g00004.1	ref|WP_025618227.1|	*-*-	UDP-glucose:sterol glucosyltransferase [Salinispora pacifica]	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04655g02004.1	sp|Q1ACL3|PSAB_CHAVU	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00163g17004.1	sp|P55200|KMT2A_MOUSE	*-**	Histone-lysine N-methyltransferase 2A	IPR001214 (SET domain), IPR003105 (SRA-YDG), IPR003616 (Post-SET domain), IPR007728 (Pre-SET domain), IPR015947 (PUA-like domain)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0042393 (histone binding)
Niben101Scf05102g02013.1	AT5G16620.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=447	IPR006636 (Heat shock chaperonin-binding)	
Niben101Scf00597g01009.1	sp|Q01593|ABI3_ARATH	*-*-	B3 domain-containing transcription factor ABI3	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf06793g03008.1	ref|WP_030609003.1|	***-	phosphoglycerate mutase [Streptomyces achromogenes]	IPR001345 (Phosphoglycerate/bisphosphoglycerate mutase, active site), IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf05827g04005.1	ref|XP_002533818.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF28571.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01971g01006.1	gb|AIT42208.1|	*-**	Kunitz-type inhibitor C [Solanum tuberosum]	IPR002160 (Proteinase inhibitor I3, Kunitz legume)	GO:0004866 (endopeptidase inhibitor activity)
Niben101Scf00735g06004.1	sp|P25087|ERG6_YEAST	****	Sterol 24-C-methyltransferase	IPR013705 (Sterol methyltransferase C-terminal), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006694 (steroid biosynthetic process), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf05319g02009.1	emb|CDY05239.1|	***-	BnaC05g45640D [Brassica napus]		
Niben101Scf00970g00003.1	sp|Q10FZ7|YAB2_ORYSJ	***-	Protein YABBY 2	IPR006780 (YABBY protein)	
Niben101Scf07945g02004.1	ref|NP_001049221.1|	*-*-	product [Oryza sativa Japonica Group]	IPR008545 (WEB family)	
Niben101Scf04331g08004.1	sp|F4JIF5|TCX2_ARATH	*-*-	Protein tesmin/TSO1-like CXC 2		
Niben101Scf01391g05005.1	ref|XP_002524800.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF37643.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf03670g02007.1			Unknown protein		
Niben101Scf00509g04010.1	sp|Q6TDP4|KLH17_HUMAN	*-*-	Kelch-like protein 17	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf06933g00002.1	gb|ACG48513.1|	--*-	SAUR33 - auxin-responsive SAUR family member [Zea mays]	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf04908g00018.1			Unknown protein		
Niben101Scf06700g02009.1	emb|CDX94322.1|	***-	BnaC01g18620D [Brassica napus]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf08039g00007.1	AT5G42570.1	****	B-cell receptor-associated 31-like LENGTH=218	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf08984g05002.1	sp|O81832|Y4729_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain)	GO:0048544 (recognition of pollen)
Niben101Scf11108g00011.1	sp|Q5JFG9|SPEE_THEKO	***-	Polyamine aminopropyl transferase	IPR001045 (Spermidine/spermine synthases family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003824 (catalytic activity)
Niben101Scf00087g00006.1	sp|A9WB97|GAL1_CHLAA	*-**	Galactokinase	IPR006206 (Mevalonate/galactokinase)	GO:0004335 (galactokinase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006012 (galactose metabolic process), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0016773 (phosphotransferase activity, alcohol group as acceptor), GO:0046835 (carbohydrate phosphorylation)
Niben101Scf03455g01004.1	AT2G43660.2	***-	Carbohydrate-binding X8 domain superfamily protein LENGTH=123	IPR012946 (X8 domain)	
Niben101Scf10579g00018.1	ref|WP_025922200.1|	***-	MULTISPECIES: thiol-disulfide oxidoreductase [Prochlorococcus]	IPR007263 (Protein of unknown function DUF393), IPR012336 (Thioredoxin-like fold)	
Niben101Scf05690g00010.1	AT4G39140.1	***-	RING/U-box superfamily protein LENGTH=429	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04104g07003.1	sp|O42993|FKBP_SCHPO	*-*-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf04406g00005.1	gb|KEH17295.1|	--*-	cytochrome P450 family 72 protein [Medicago truncatula]	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00215g11015.1	sp|Q3KRB8|RHGBB_HUMAN	--*-	Rho GTPase-activating protein 11B		
Niben101Scf02074g06084.1	gb|AFI44276.1|	*-*-	NADH dehydrogenase subunit 5 (mitochondrion) [Silene vulgaris]		
Niben101Scf00022g06009.1	gb|ABF94264.1|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf02346g00002.1	sp|O23826|K125_TOBAC	*-*-	125 kDa kinesin-related protein		
Niben101Scf09010g04001.1	sp|Q9CR11|YETS4_MOUSE	*-*-	YEATS domain-containing protein 4	IPR005033 (YEATS)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf23770g00006.1	sp|A8XGH1|RPAB1_CAEBR	****	DNA-directed RNA polymerases I, II, and III subunit RPABC1	IPR014381 (DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf01209g00012.1	sp|Q3EDF8|PPR28_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02594g09001.1	AT4G19420.1	*-*-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf16764g00001.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf10322g01017.1	AT3G48820.1	*-*-	Glycosyltransferase family 29 (sialyltransferase) family protein LENGTH=440		
Niben101Scf09554g02022.1	sp|Q9SXD8|PPR90_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01469g02008.1	sp|O48723|PLP2_ARATH	***-	Patatin-like protein 2	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf12589g00002.1	AT1G06820.1	****	carotenoid isomerase LENGTH=595	IPR014101 (Carotene isomerase)	GO:0016117 (carotenoid biosynthetic process), GO:0016853 (isomerase activity)
Niben101Scf05044g03011.1	ref|XP_002516081.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46501.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02869g01002.1	sp|O64791|SY124_ARATH	*-*-	Syntaxin-124	IPR010989 (t-SNARE)	GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf02510g05021.1	sp|Q9ZQG9|E1314_ARATH	***-	Glucan endo-1,3-beta-glucosidase 14	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00220g03001.1	sp|Q9M815|PCR8_ARATH	*-*-	Protein PLANT CADMIUM RESISTANCE 8		
Niben101Scf00597g03006.1	sp|Q9NX01|TXN4B_HUMAN	***-	Thioredoxin-like protein 4B	IPR004123 (mRNA splicing factor, thioredoxin-like U5 snRNP), IPR012336 (Thioredoxin-like fold)	GO:0005681 (spliceosomal complex), GO:0007067 (mitotic nuclear division)
Niben101Scf03274g03014.1			Unknown protein		
Niben101Scf09876g00009.1	sp|Q68F45|WIPI3_XENLA	***-	WD repeat domain phosphoinositide-interacting protein 3	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00294g03034.1	sp|Q9XF97|RL4_PRUAR	***-	60S ribosomal protein L4	IPR002136 (Ribosomal protein L4/L1e), IPR023574 (Ribosomal protein L4 domain), IPR025755 (60S ribosomal protein L4, C-terminal domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01227g03014.1	sp|Q4A8U5|DNAK_MYCH7	--*-	Chaperone protein DnaK		
Niben101Scf06848g08022.1	sp|Q58D06|WDR74_BOVIN	*-*-	WD repeat-containing protein 74	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf11264g01011.1	sp|Q9LN01|PPR21_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00551g06007.1	sp|Q9LS42|CASP_ARATH	*-*-	Protein CASP		
Niben101Scf02494g01009.1	sp|Q9LQU4|PCR2_ARATH	***-	Protein PLANT CADMIUM RESISTANCE 2	IPR006461 (Uncharacterised protein family Cys-rich)	
Niben101Scf09584g00038.1	sp|O94889|KLH18_HUMAN	*-*-	Kelch-like protein 18	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf08479g00003.1	emb|CDX85329.1|	*-*-	BnaC07g26400D [Brassica napus]		
Niben101Scf00131g01009.1	emb|CDX89594.1|	***-	BnaC04g36130D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf05554g05011.1	sp|Q9CA25|LAX3_ARATH	*-*-	Auxin transporter-like protein 3	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf02798g01046.1	sp|A3PGL4|RL2_RHOS1	--*-	50S ribosomal protein L2	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02621g00017.1	ref|WP_009438520.1|	--*-	filamentous hemagglutinin [Selenomonas sp. oral taxon 137] gb|EFR41275.1| filamentous hemeagglutinin family domain protein [Selenomonas sp. oral taxon 137 str. F0430]		
Niben101Scf01352g00003.1	AT4G22740.1	***-	glycine-rich protein LENGTH=356		
Niben101Scf02249g00014.1	ref|NP_190526.1|	--*-	protein RESPONSE TO LOW SULFUR 3 [Arabidopsis thaliana] emb|CAB62461.1| hypothetical protein [Arabidopsis thaliana] dbj|BAC42759.1| unknown protein [Arabidopsis thaliana] gb|AAP04108.1| unknown protein [Arabidopsis thaliana] gb|AEE78558.1| response to low sulfur 3 protein [Arabidopsis thaliana]		
Niben101Scf02354g10002.1	AT5G46250.1	*-**	RNA-binding protein LENGTH=422	IPR002344 (Lupus La protein), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0006396 (RNA processing), GO:0030529 (ribonucleoprotein complex)
Niben101Scf13391g00004.1	AT5G50780.1	***-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein LENGTH=819	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf03993g05005.1	sp|B9SBU9|TPS5_RICCO	****	Terpene synthase 5	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf06000g04006.1			Unknown protein		
Niben101Scf02070g00005.1			Unknown protein		
Niben101Scf00854g01030.1	ref|XP_002535265.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF27117.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01693g00016.1	sp|P47758|SRPRB_MOUSE	****	Signal recognition particle receptor subunit beta	IPR005225 (Small GTP-binding protein domain), IPR019009 (Signal recognition particle receptor, beta subunit), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf12141g00012.1	ref|WP_032503198.1|	*-*-	ABC transporter substrate-binding protein [Propionibacterium acnes]		
Niben101Scf03969g05001.1	AT2G38970.1	****	Zinc finger (C3HC4-type RING finger) family protein LENGTH=692	IPR002035 (von Willebrand factor, type A), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09501g01027.1	AT4G02460.1	****	DNA mismatch repair protein, putative LENGTH=923	IPR014790 (MutL, C-terminal, dimerisation), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR028831 (DNA mismatch repair protein Pms1/Pms2)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding), GO:0032300 (mismatch repair complex)
Niben101Scf01526g00001.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf01773g07023.1	gb|AGJ71919.1|	****	10-deacetylbaccatin III-10-O-acetyl transferase [Taxus baccata]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf03794g01002.1	gb|KEH37797.1|	***-	F-box/RNI/FBD-like domain protein [Medicago truncatula]		
Niben101Scf13057g00002.1	ref|XP_010111583.1|	*-**	30S rib S21 [Morus notabilis]	IPR001911 (Ribosomal protein S21)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02137g00008.1	AT2G15900.1	***-	Phox-associated domain;Phox-like;Sorting nexin, C-terminal LENGTH=994	IPR001683 (Phox homologous domain), IPR003114 (Phox-associated domain), IPR013937 (Sorting nexin, C-terminal)	GO:0035091 (phosphatidylinositol binding)
Niben101Scf14320g00010.1	sp|P45431|BEV1B_BETPN	-**-	Major pollen allergen Bet v 1-B	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf13593g00006.1	sp|Q55GA4|CDC45_DICDI	***-	Cell division control protein 45 homolog	IPR003874 (CDC45 family)	GO:0006270 (DNA replication initiation)
Niben101Scf06236g03012.1			Unknown protein		
Niben101Scf06171g00001.1	sp|Q1J0V5|RL31_DEIGD	***-	50S ribosomal protein L31	IPR002150 (Ribosomal protein L31)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00090g14005.1	sp|A2CEQ0|SCM2B_DANRE	--**	Calcium-binding mitochondrial carrier protein SCaMC-2-B	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf15631g00004.1	AT5G36100.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=295		
Niben101Scf04198g02001.1	AT2G41190.1	***-	Transmembrane amino acid transporter family protein LENGTH=536	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf18771g00009.1	AT2G37980.1	***-	O-fucosyltransferase family protein LENGTH=638	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf17767g00004.1	sp|Q945B4|AOP3L_ARATH	*-**	2-oxoglutarate-dependent dioxygenase AOP3	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01489g00009.1	sp|Q944A9|NPS11_ARATH	***-	Novel plant SNARE 11	IPR000727 (Target SNARE coiled-coil domain), IPR005606 (Sec20)	GO:0005515 (protein binding)
Niben101Scf04391g04003.1	emb|CDY20424.1|	-**-	BnaC02g23920D [Brassica napus]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf05222g06009.1	sp|Q9XGM2|MRE11_ARATH	****	Double-strand break repair protein MRE11	IPR003701 (DNA repair protein Mre11), IPR029052 (Metallo-dependent phosphatase-like)	GO:0004519 (endonuclease activity), GO:0004527 (exonuclease activity), GO:0005634 (nucleus), GO:0006259 (DNA metabolic process), GO:0006302 (double-strand break repair), GO:0016787 (hydrolase activity), GO:0030145 (manganese ion binding)
Niben101Scf02479g00001.1	sp|Q8S9H7|DIV_ANTMA	*-*-	Transcription factor DIVARICATA		
Niben101Scf01284g00004.1	sp|B6VJS4|ROMT_VITVI	****	Trans-resveratrol di-O-methyltransferase	IPR016461 (O-methyltransferase COMT-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity), GO:0008171 (O-methyltransferase activity), GO:0046983 (protein dimerization activity)
Niben101Scf00057g00012.1	sp|Q8L9W3|ATL23_ARATH	***-	E3 ubiquitin-protein ligase ATL23		
Niben101Scf01677g06010.1	sp|O16808|ACT_MAYDE	***-	Actin	IPR004000 (Actin family)	
Niben101Scf00530g04004.1	AT5G50400.1	***-	purple acid phosphatase 27 LENGTH=611	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf04654g02009.1	emb|CDY49697.1|	--*-	BnaA02g27360D [Brassica napus]	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf00225g07012.1	sp|P40934|CYB5_BRAOB	***-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf11936g01018.1	AT2G22650.1	****	FAD-dependent oxidoreductase family protein LENGTH=420	IPR006076 (FAD dependent oxidoreductase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf06277g05013.1	sp|D3RX66|PSB_FERPA	****	Proteasome subunit beta	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf10785g01013.1	sp|B8BKI8|MCM2_ORYSI	****	DNA replication licensing factor MCM2	IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027925 (MCM N-terminal domain)	GO:0003677 (DNA binding), GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006270 (DNA replication initiation), GO:0042555 (MCM complex)
Niben101Scf09987g03003.1	AT5G05840.1	***-	Protein of unknown function (DUF620) LENGTH=439	IPR006873 (Protein of unknown function DUF620)	
Niben101Scf04767g00002.1	AT2G21340.1	***-	MATE efflux family protein LENGTH=559		
Niben101Scf05029g02013.1	sp|Q9FJQ5|EIL5_ARATH	--*-	ETHYLENE INSENSITIVE 3-like 5 protein		
Niben101Scf00033g07011.1	emb|CDY13677.1|	***-	BnaA06g32460D [Brassica napus]	IPR021775 (Protein of unknown function DUF3339)	
Niben101Scf06235g03006.1	emb|CDY56060.1|	--*-	BnaCnng29790D [Brassica napus]		
Niben101Scf03921g00005.1	sp|A8AA18|RS19_IGNH4	****	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf07580g02009.1	sp|Q2LVL0|MSBA_SYNAS	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf06715g02001.1	sp|Q9C6X2|SCAM4_ARATH	****	Secretory carrier-associated membrane protein 4	IPR007273 (SCAMP)	GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf00143g01007.1	gb|AES63134.2|	*-*-	lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf00270g01015.1	sp|Q7FRS8|CNBLA_ARATH	--*-	Calcineurin B-like protein 10		
Niben101Scf04071g00009.1	AT2G44430.1	****	DNA-binding bromodomain-containing protein LENGTH=646	IPR001487 (Bromodomain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf00341g05009.1	emb|CDY34463.1|	***-	BnaC01g21700D [Brassica napus]		
Niben101Scf03448g00011.1	emb|CDY36312.1|	*-*-	BnaA01g31060D [Brassica napus]	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf01075g02025.1			Unknown protein		
Niben101Scf01717g05007.1	sp|Q86UP2|KTN1_HUMAN	--*-	Kinectin		
Niben101Ctg13666g00001.1	ref|NP_564653.1|	--*-	E3 ubiquitin ligase-like protein [Arabidopsis thaliana]		
Niben101Scf12725g00035.1	sp|Q9FKS8|LHT1_ARATH	***-	Lysine histidine transporter 1	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf04594g02003.1	AT4G15470.1	***-	Bax inhibitor-1 family protein LENGTH=256	IPR006214 (Bax inhibitor 1-related)	
Niben101Ctg13746g00004.1	ref|XP_007014955.1|	*-*-	Far1-related sequence 4 isoform 3 [Theobroma cacao] gb|EOY32574.1| Far1-related sequence 4 isoform 3 [Theobroma cacao]		
Niben101Scf08447g03007.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf01964g07001.1	sp|P0CM17|ARF_CRYNB	*-*-	ADP-ribosylation factor	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf04406g03007.1	sp|Q6DJE4|CPSF5_XENLA	****	Cleavage and polyadenylation specificity factor subunit 5	IPR016706 (Cleavage/polyadenylation specificity factor subunit 5)	GO:0003729 (mRNA binding), GO:0005849 (mRNA cleavage factor complex), GO:0006378 (mRNA polyadenylation)
Niben101Scf08936g08026.1	sp|Q8W475|SWI3A_ARATH	***-	SWI/SNF complex subunit SWI3A	IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf10065g01015.1	sp|O80919|TBL34_ARATH	***-	Protein trichome birefringence-like 34	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf02044g03004.1	sp|Q8GXL7|GAT24_ARATH	****	GATA transcription factor 24	IPR010399 (Tify), IPR010402 (CCT domain), IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03113g01009.1	sp|Q680B9|PRRP2_ARATH	***-	Proteinaceous RNase P 2	IPR021869 (Ribonuclease Zc3h12a-like)	
Niben101Scf22360g00006.1	sp|Q9C7T4|BH096_ARATH	***-	Transcription factor bHLH96	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf17922g02007.1	sp|Q9LFC5|PP360_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01818g00012.1	sp|Q16828|DUS6_HUMAN	--**	Dual specificity protein phosphatase 6	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf06499g00012.1	sp|Q5PQZ3|ZNT9_DANRE	****	Zinc transporter 9	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01221g03012.1	sp|Q0STR4|MUTS_CLOPS	*-**	DNA mismatch repair protein MutS	IPR000305 (GIY-YIG nuclease superfamily), IPR000432 (DNA mismatch repair protein MutS, C-terminal), IPR007695 (DNA mismatch repair protein MutS-like, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf02060g05001.1	emb|CDX86254.1|	***-	BnaA06g29710D [Brassica napus]		
Niben101Scf07152g00001.1	sp|Q01H90|LDL3_ORYSI	***-	Lysine-specific histone demethylase 1 homolog 3	IPR002937 (Amine oxidase), IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR016040 (NAD(P)-binding domain)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08651g06012.1	gb|ABA99680.2|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf03693g00006.1	AT5G66550.1	*-*-	Maf-like protein LENGTH=207	IPR029001 (Inosine triphosphate pyrophosphatase-like)	GO:0005737 (cytoplasm)
Niben101Scf16981g02009.1	gb|KEH17480.1|	--*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf04477g02007.1			Unknown protein		
Niben101Scf04993g06003.1	sp|Q5XIU1|ABTB1_RAT	*-*-	Ankyrin repeat and BTB/POZ domain-containing protein 1	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf07751g01018.1	sp|Q5ZLR6|ARHG6_CHICK	--*-	Rho guanine nucleotide exchange factor 6		
Niben101Scf08704g02003.1	AT2G27770.1	***-	Plant protein of unknown function (DUF868) LENGTH=320	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf04123g01013.1	AT1G48480.1	*-**	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00927g02016.1	AT1G14820.3	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=252	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf00143g03005.1	AT1G79570.1	*-*-	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain LENGTH=1248	IPR000270 (Phox/Bem1p)	GO:0005515 (protein binding)
Niben101Scf16457g00010.1	sp|B7K911|UREF_CYAP7	***-	Urease accessory protein UreF	IPR002639 (Urease accessory protein UreF)	GO:0006807 (nitrogen compound metabolic process), GO:0016151 (nickel cation binding)
Niben101Scf01304g11003.1			Unknown protein		
Niben101Scf02805g07010.1	gb|ACG36548.1|	***-	fiber protein Fb34 [Zea mays]	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf11969g00008.1			Unknown protein		
Niben101Scf08817g00003.1	sp|P80608|CYSK_MAIZE	***-	Cysteine synthase	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme)	
Niben101Scf05467g00019.1	sp|Q0AME1|UBIG_MARMM	****	Ubiquinone biosynthesis O-methyltransferase	IPR010233 (Ubiquinone biosynthesis O-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006744 (ubiquinone biosynthetic process), GO:0008425 (2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity)
Niben101Scf05535g01002.1	AT2G41370.1	***-	Ankyrin repeat family protein / BTB/POZ domain-containing protein LENGTH=491	IPR011333 (BTB/POZ fold), IPR020683 (Ankyrin repeat-containing domain), IPR024228 (Domain of unknown function DUF3420)	GO:0005515 (protein binding)
Niben101Scf04515g00010.1	sp|Q9HJX7|HELS_THEAC	*-**	ATP-dependent DNA helicase Hel308	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR016438 (RNA helicase, ATP-dependent, SK12/DOB1), IPR025696 (rRNA-processing arch domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Ctg05086g00002.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf09654g03005.1	sp|O13339|TERT_SCHPO	--*-	Telomerase reverse transcriptase		
Niben101Scf08621g05005.1	AT5G35170.1	*-**	adenylate kinase family protein LENGTH=588	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf02656g04003.1			Unknown protein		
Niben101Scf07121g02002.1	sp|Q9JKN1|ZNT7_MOUSE	*-**	Zinc transporter 7	IPR002524 (Cation efflux protein)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf11560g00007.1	gb|ABD32401.2|	***-	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf02147g01007.1	sp|O78502|PSAD_GUITH	****	Photosystem I reaction center subunit II	IPR003685 (Photosystem I PsaD)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf15038g00001.1	sp|Q9C9V6|Y1790_ARATH	--*-	BTB/POZ domain-containing protein	IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0009958 (positive gravitropism)
Niben101Scf03628g00022.1			Unknown protein		
Niben101Scf08899g00006.1	sp|O14270|FHL1_SCHPO	*-*-	Fork head transcription factor 1	IPR008984 (SMAD/FHA domain)	GO:0005515 (protein binding)
Niben101Scf11585g00011.1	AT1G64600.1	*-**	methyltransferases;copper ion binding LENGTH=537	IPR007533 (Cytochrome c oxidase assembly protein CtaG/Cox11), IPR015324 (Ribosomal protein Rsm22, bacterial-type), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005507 (copper ion binding), GO:0006412 (translation), GO:0008168 (methyltransferase activity)
Niben101Scf00563g03001.1	sp|Q74LY0|UBIE_LACJO	*-**	Demethylmenaquinone methyltransferase	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf04347g01029.1	AT3G61770.1	***-	Acid phosphatase/vanadium-dependent haloperoxidase-related protein LENGTH=284	IPR003832 (Acid phosphatase/vanadium-dependent haloperoxidase-related)	
Niben101Scf00454g04003.1	sp|Q40476|ERF1_TOBAC	****	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01062g06002.1			Unknown protein		
Niben101Scf00080g00001.1	sp|Q6CBP4|PPID_YARLI	*-*-	Peptidyl-prolyl cis-trans isomerase D	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR011990 (Tetratricopeptide-like helical domain), IPR023114 (Elongated TPR repeat-containing domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0005515 (protein binding), GO:0006457 (protein folding)
Niben101Scf15653g02013.1	sp|Q9JJC8|NIPA2_MOUSE	--**	Magnesium transporter NIPA2	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf10865g00005.1	sp|Q2MIC5|YCF2_SOLBU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf03738g01002.1			Unknown protein	IPR003656 (Zinc finger, BED-type)	GO:0003677 (DNA binding)
Niben101Scf01724g00003.1	AT5G64330.1	***-	Phototropic-responsive NPH3 family protein LENGTH=746	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain), IPR029959 (Root phototropism protein 3-like)	GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf13966g00011.1	sp|Q02040|AK17A_HUMAN	--*-	A-kinase anchor protein 17A		
Niben101Scf00199g00012.1	AT5G13760.1	***-	Plasma-membrane choline transporter family protein LENGTH=569	IPR007603 (Choline transporter-like)	
Niben101Scf06017g00002.1	AT2G38940.1	****	phosphate transporter 1;4 LENGTH=534	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005315 (inorganic phosphate transmembrane transporter activity), GO:0006817 (phosphate ion transport), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04074g00006.1	gb|KEH22208.1|	***-	late embryogenesis abundant protein [Medicago truncatula]	IPR005513 (Late embryogenesis abundant protein, LEA-25/LEA-D113)	GO:0009790 (embryo development)
Niben101Scf09109g00003.1	emb|CBM56257.1|	*-**	bZIP transcription factor [Nicotiana benthamiana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07198g00006.1	AT1G05840.1	***-	Eukaryotic aspartyl protease family protein LENGTH=485	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05109g01005.1	sp|Q9SIQ2|GDL44_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02929g01006.1	ref|YP_009045741.1|	-**-	orf105a (mitochondrion) [Batis maritima] gb|AIC83344.1| orf105a (mitochondrion) [Batis maritima]		
Niben101Scf02207g04014.1	sp|Q7TPD0|INT3_MOUSE	*-*-	Integrator complex subunit 3	IPR019333 (Integrator complex subunit 3)	
Niben101Scf04686g00010.1	AT2G22560.1	*-*-	Kinase interacting (KIP1-like) family protein LENGTH=947		
Niben101Scf06578g00021.1	sp|Q9LSQ6|PBP1_ARATH	****	Calcium-binding protein PBP1	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00261g02021.1	sp|Q4QNB9|FADR_HAEI8	--*-	Fatty acid metabolism regulator protein		
Niben101Scf05588g12019.1	sp|P56912|NUOF1_RHIME	****	NADH-quinone oxidoreductase subunit F 1	IPR011537 (NADH ubiquinone oxidoreductase, F subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0010181 (FMN binding), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0051287 (NAD binding), GO:0051539 (4 iron, 4 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02762g01002.1	sp|A5G9B6|NUOD_GEOUR	****	NADH-quinone oxidoreductase subunit D	IPR014029 (NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site), IPR022885 (NAD(P)H-quinone oxidoreductase subunit D/H), IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01596g03006.1			Unknown protein		
Niben101Scf05664g03022.1			Unknown protein		
Niben101Scf00878g00003.1	sp|Q9ZTA1|AOP3C_ARATH	--*-	2-oxoglutarate-dependent dioxygenase AOP3		
Niben101Scf11126g10007.1	sp|F4JN00|CSTR4_ARATH	*-*-	CMP-sialic acid transporter 4	IPR007271 (Nucleotide-sugar transporter)	GO:0000139 (Golgi membrane), GO:0005351 (sugar:proton symporter activity), GO:0008643 (carbohydrate transport), GO:0016021 (integral component of membrane)
Niben101Scf02541g06011.1	sp|C1FVJ1|ADD_CLOBJ	****	Adenosine deaminase	IPR001365 (Adenosine/AMP deaminase domain)	GO:0019239 (deaminase activity)
Niben101Scf09556g01002.1	sp|Q9M352|RL362_ARATH	***-	60S ribosomal protein L36-2	IPR000509 (Ribosomal protein L36e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01991g02011.1	ref|WP_029248792.1|	***-	alpha/beta hydrolase [Mycobacterium avium]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07244g00007.1			Unknown protein		
Niben101Scf01623g16001.1	sp|A4GYV2|RK2_POPTR	*-*-	50S ribosomal protein L2, chloroplastic	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf07524g00001.1	AT5G66960.1	***-	Prolyl oligopeptidase family protein LENGTH=792	IPR002470 (Peptidase S9A, prolyl oligopeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf04963g02003.1	ref|WP_029173312.1|	***-	DNA-binding protein [Streptococcus suis]	IPR010298 (Protein of unknown function DUF901)	
Niben101Scf01727g08006.1	AT5G39785.2	*-*-	Protein of unknown function (DUF1666) LENGTH=607	IPR008195 (Ribosomal protein L34Ae), IPR012870 (Protein of unknown function DUF1666)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04944g00015.1			Unknown protein		
Niben101Scf08526g04002.1	gb|AAK13103.1|AC078839_19	*-*-	Helicase-like protein [Oryza sativa Japonica Group]		
Niben101Scf01015g01012.1	sp|B6IR01|RL21_RHOCS	--*-	50S ribosomal protein L21	IPR028909 (Ribosomal protein L21-like)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00542g04001.1	sp|Q9PT84|KCNH2_CHICK	*-**	Potassium voltage-gated channel subfamily H member 2	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR020683 (Ankyrin repeat-containing domain)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0005515 (protein binding), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01526g09010.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Ctg14054g00002.1	sp|Q9BTT6|LRRC1_HUMAN	*-*-	Leucine-rich repeat-containing protein 1	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf06588g01001.1			Unknown protein		
Niben101Scf02538g04003.1	sp|Q9C9N3|C3H14_ARATH	***-	Zinc finger CCCH domain-containing protein 14	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf08351g04015.1	sp|Q93VJ4|BEE2_ARATH	--*-	Transcription factor BEE 2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf08078g02023.1	AT4G38900.1	*-**	Basic-leucine zipper (bZIP) transcription factor family protein LENGTH=553	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05439g02039.1	sp|Q5FGW5|NUOH_EHRRG	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf04411g03013.1	AT5G04020.1	*-**	calmodulin binding LENGTH=1495	IPR012417 (Calmodulin-binding domain, plant)	GO:0005516 (calmodulin binding)
Niben101Scf06757g01002.1	sp|O23066|C86A2_ARATH	--*-	Cytochrome P450 86A2		
Niben101Scf00160g06034.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02626g08008.1	gb|AES82481.2|	****	MTA3-Myb-like DNA-binding domain protein, putative [Medicago truncatula]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf02907g04003.1			Unknown protein		
Niben101Scf02836g02006.1	AT4G31170.1	****	Protein kinase superfamily protein LENGTH=412	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03389g00027.1	ref|YP_009045802.1|	*-*-	orf101b (mitochondrion) [Batis maritima] gb|AIC83405.1| orf101b (mitochondrion) [Batis maritima]		
Niben101Scf13361g01009.1	sp|P23922.1|HBP1A_WHEAT	*-**	RecName: Full=Transcription factor HBP-1a; AltName: Full=Histone-specific transcription factor HBP1 [Triticum aestivum] pir||A41349 histone-specific transcription factor HBP1 - wheat emb|CAA40101.1| HBP-1a [Triticum aestivum] gb|AAA34293.1| DNA-binding protein [Triticum aestivum] dbj|BAA07289.1| transcription factor HBP-1a(17) [Triticum aestivum]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf06435g03003.1	sp|Q9XII1|PDV2_ARATH	***-	Plastid division protein PDV2		
Niben101Scf06776g00001.1	sp|Q6MUE7|MNME_MYCMS	--*-	tRNA modification GTPase MnmE	IPR005690 (Chloroplast protein import component Toc86/159), IPR024283 (Domain of unknown function DUF3406, chloroplast translocase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0016817 (hydrolase activity, acting on acid anhydrides)
Niben101Scf04452g00005.1	gb|ACB70456.1|	***-	X7, partial [Silene diclinis]	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf01956g10007.1	AT2G40900.1	*-**	nodulin MtN21 /EamA-like transporter family protein LENGTH=394	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf07036g02008.1	sp|Q3BAP2|RR14_PHAAO	*-*-	30S ribosomal protein S14, chloroplastic	IPR001209 (Ribosomal protein S14)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06665g01018.1	sp|P23922.1|HBP1A_WHEAT	*-**	RecName: Full=Transcription factor HBP-1a; AltName: Full=Histone-specific transcription factor HBP1 [Triticum aestivum] pir||A41349 histone-specific transcription factor HBP1 - wheat emb|CAA40101.1| HBP-1a [Triticum aestivum] gb|AAA34293.1| DNA-binding protein [Triticum aestivum] dbj|BAA07289.1| transcription factor HBP-1a(17) [Triticum aestivum]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04882g00001.1	sp|P28178|PK2_DICDI	****	Protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02250g01012.1	ref|XP_007035375.1|	*-*-	SAC3/GANP/Nin1/mts3/eIF-3 p25 family, putative isoform 3 [Theobroma cacao] ref|XP_007035377.1| SAC3/GANP/Nin1/mts3/eIF-3 p25 family, putative isoform 3 [Theobroma cacao] gb|EOY06301.1| SAC3/GANP/Nin1/mts3/eIF-3 p25 family, putative isoform 3 [Theobroma cacao] gb|EOY06303.1| SAC3/GANP/Nin1/mts3/eIF-3 p25 family, putative isoform 3 [Theobroma cacao]		
Niben101Scf01005g04001.1	ref|NP_001063430.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf06867g05005.1	AT1G25550.1	***-	myb-like transcription factor family protein LENGTH=344	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01933g00001.1			Unknown protein		
Niben101Scf00592g15017.1	AT1G55760.1	***-	BTB/POZ domain-containing protein LENGTH=329	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf04431g01010.1	AT3G22190.1	***-	IQ-domain 5 LENGTH=422	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf24439g00005.1	sp|Q921M3|SF3B3_MOUSE	***-	Splicing factor 3B subunit 3	IPR004871 (Cleavage/polyadenylation specificity factor, A subunit, C-terminal), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf04641g03006.1	sp|Q9SQI2|GIGAN_ARATH	***-	Protein GIGANTEA	IPR026211 (GIGANTEA)	GO:2000028 (regulation of photoperiodism, flowering)
Niben101Scf15568g00014.1	AT2G45850.1	***-	AT hook motif DNA-binding family protein LENGTH=348	IPR005175 (Domain of unknown function DUF296)	
Niben101Scf08651g06015.1	sp|A6ZZY8|DBP7_YEAS7	****	ATP-dependent RNA helicase DBP7	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR025313 (Domain of unknown function DUF4217), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf02452g05005.1	AT1G21600.1	*-*-	plastid transcriptionally active 6 LENGTH=328		
Niben101Scf11349g00006.1	sp|Q8H038|KATAM_ORYSJ	*-*-	Xyloglucan galactosyltransferase KATAMARI1 homolog	IPR004263 (Exostosin-like)	
Niben101Scf09372g04010.1	gb|ADK97920.1|	*-*-	LuxR family transcriptional regulator [Schiedea globosa]		
Niben101Scf07147g03001.1	ref|NP_001050595.1|	*-*-	OsJ_11625 [Oryza sativa Japonica Group]		
Niben101Scf02124g00016.1	AT1G79720.1	***-	Eukaryotic aspartyl protease family protein LENGTH=484	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03693g10002.1	sp|Q6L399|PSAB_SACHY	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf04801g01025.1	sp|Q40161|GP1_SOLLC	***-	Polygalacturonase-1 non-catalytic subunit beta	IPR004873 (BURP domain)	
Niben101Scf01412g00014.1	sp|Q54I81|EI2BA_DICDI	*-*-	Translation initiation factor eIF-2B subunit alpha	IPR000649 (Initiation factor 2B-related), IPR027363 (Methylthioribose-1-phosphate isomerase-like, N-terminal domain)	GO:0044237 (cellular metabolic process)
Niben101Scf06912g01015.1	AT4G11980.1	****	nudix hydrolase homolog 14 LENGTH=309	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf02538g05005.1	sp|Q9SIA1|MATE8_ARATH	*-*-	MATE efflux family protein 8	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03944g00001.1	sp|P29130|PHYB_TOBAC	***-	Phytochrome B	IPR001294 (Phytochrome), IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR029016 (GAF domain-like)	GO:0000155 (phosphorelay sensor kinase activity), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0007165 (signal transduction), GO:0009584 (detection of visible light), GO:0016020 (membrane), GO:0018298 (protein-chromophore linkage)
Niben101Ctg15964g00004.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01863g04003.1	AT1G10150.1	***-	Carbohydrate-binding protein LENGTH=414		
Niben101Scf03006g01001.1	AT2G37870.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=115	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00541g05004.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02471g06005.1	sp|Q5QM99|RL37A_ORYSJ	***-	60S ribosomal protein L37a	IPR002674 (Ribosomal protein L37ae), IPR011332 (Zinc-binding ribosomal protein)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf12266g01004.1	ref|XP_002299608.1|	--*-	late embryogenesis abundant family protein [Populus trichocarpa] gb|EEE84413.1| late embryogenesis abundant family protein [Populus trichocarpa]		
Niben101Scf11401g01012.1	sp|B3H4F1|SP1L1_ARATH	***-	Protein SPIRAL1-like 1		
Niben101Scf13556g00004.1	sp|Q9FS10|PSK_ASPOF	*-*-	Phytosulfokines	IPR009438 (Phytosulfokine)	GO:0005576 (extracellular region), GO:0008083 (growth factor activity), GO:0008283 (cell proliferation)
Niben101Scf07457g01012.1	AT1G23750.1	***-	Nucleic acid-binding, OB-fold-like protein LENGTH=137	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf23843g00010.1	AT2G27730.1	***-	copper ion binding LENGTH=113		
Niben101Scf03875g00003.1	sp|A0JND3|EOGT_BOVIN	--**	EGF domain-specific O-linked N-acetylglucosamine transferase	IPR007657 (Glycosyltransferase AER61, uncharacterised)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf03766g13003.1	emb|CDY50122.1|	***-	BnaC04g32570D [Brassica napus]		
Niben101Scf01295g01011.1	gb|KEH37309.1|	*-*-	2OG-Fe(II) oxygenase family oxidoreductase [Medicago truncatula]	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf09548g00010.1	sp|Q8DML3|IF1_THEEB	*-**	Translation initiation factor IF-1	IPR004368 (Translation initiation factor IF-1), IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf00142g00002.1	sp|Q61089|FZD6_MOUSE	--*-	Frizzled-6		
Niben101Scf05044g01007.1	AT1G52360.2	***-	Coatomer, beta' subunit LENGTH=970	IPR016453 (Coatomer beta' subunit (COPB2))	GO:0005198 (structural molecule activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat)
Niben101Scf04444g09013.1	sp|Q6NUB2|CW15A_XENLA	*-*-	Protein CWC15 homolog A	IPR006973 (Pre-mRNA-splicing factor  Cwf15/Cwc15)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005681 (spliceosomal complex)
Niben101Scf03392g01011.1	sp|A6MML8|YCF4_DIOEL	*-**	Photosystem I assembly protein Ycf4	IPR003359 (Photosystem I Ycf4, assembly), IPR010420 (CASTOR/POLLUX/SYM8 ion channels)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf01818g01005.1	sp|Q9Z1A9|TBCD8_MOUSE	*-*-	TBC1 domain family member 8	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf02303g00023.1	sp|Q9LD45|BI1_ARATH	*-*-	Bax inhibitor 1	IPR006214 (Bax inhibitor 1-related)	
Niben101Scf00163g03008.1	AT1G76510.3	****	ARID/BRIGHT DNA-binding domain-containing protein LENGTH=493	IPR001606 (ARID DNA-binding domain)	GO:0003677 (DNA binding)
Niben101Scf00751g00001.1	sp|Q9SZB9|PER47_ARATH	****	Peroxidase 47	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04003g07002.1	sp|Q5SWK7|RN145_MOUSE	*-*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04081g00003.1			Unknown protein		
Niben101Scf07590g01007.1			Unknown protein		
Niben101Scf07608g02004.1	AT4G33840.1	*-**	Glycosyl hydrolase family 10 protein LENGTH=576	IPR008979 (Galactose-binding domain-like), IPR017853 (Glycoside hydrolase superfamily)	GO:0005975 (carbohydrate metabolic process), GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf07375g01002.1	AT3G52440.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=247	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00258g02009.1	sp|Q9CXS4|CENPV_MOUSE	--*-	Centromere protein V	IPR011057 (Mss4-like)	
Niben101Scf08006g01004.1	sp|Q802W2|A9A1B_DANRE	****	Aldehyde dehydrogenase family 9 member A1-B	IPR016161 (Aldehyde/histidinol dehydrogenase), IPR029510 (Aldehyde dehydrogenase, glutamic acid active site)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf04623g00005.1	sp|Q6MLS7|FTSH1_BDEBA	*-**	ATP-dependent zinc metalloprotease FtsH 1	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf03460g07007.1	sp|O48677|PER6_ARATH	****	Peroxidase 6	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01842g05006.1	ref|XP_003606875.1|	*-**	Helicase-like protein [Medicago truncatula]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf10299g00004.1	sp|Q2T9X7|UB2E3_BOVIN	*-*-	Ubiquitin-conjugating enzyme E2 E3	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf01156g01015.1	AT4G33920.1	****	Protein phosphatase 2C family protein LENGTH=380	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf27671g00007.1	AT2G40980.1	***-	Protein kinase superfamily protein LENGTH=617	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02130g00004.1	sp|Q1E2D2|SSH4_COCIM	*-*-	Protein SSH4	IPR003877 (SPRY domain)	GO:0005515 (protein binding)
Niben101Scf01124g23015.1	ref|XP_002513164.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF49155.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08630g00002.1	sp|Q9C1W5|TIM16_SCHPO	****	Mitochondrial import inner membrane translocase subunit tim16	IPR005341 (Mitochondrial import inner membrane translocase subunit Tim16)	GO:0005744 (mitochondrial inner membrane presequence translocase complex), GO:0030150 (protein import into mitochondrial matrix)
Niben101Scf00381g01001.1	sp|Q14149|MORC3_HUMAN	*-**	MORC family CW-type zinc finger protein 3	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR011124 (Zinc finger, CW-type)	GO:0008270 (zinc ion binding)
Niben101Scf04592g00016.1	sp|A2BN38|RS12_HYPBU	****	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf07339g02015.1	sp|A5UE38|GLPE_HAEIE	-**-	Thiosulfate sulfurtransferase GlpE	IPR001763 (Rhodanese-like domain)	
Niben101Scf03842g09018.1	sp|B8LUH2|MAP21_TALSN	****	Methionine aminopeptidase 2-1	IPR000994 (Peptidase M24, structural domain), IPR001714 (Peptidase M24, methionine aminopeptidase)	GO:0004177 (aminopeptidase activity), GO:0006508 (proteolysis), GO:0008235 (metalloexopeptidase activity)
Niben101Scf13411g05014.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf01617g00005.1	sp|Q6ABX8|ODPB_LEIXX	****	Pyruvate dehydrogenase E1 component subunit beta	IPR005475 (Transketolase-like, pyrimidine-binding domain), IPR005476 (Transketolase, C-terminal), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR027110 (Pyruvate dehydrogenase E1 component subunit beta), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0004739 (pyruvate dehydrogenase (acetyl-transferring) activity), GO:0006086 (acetyl-CoA biosynthetic process from pyruvate), GO:0008152 (metabolic process)
Niben101Scf05484g01003.1	gb|AAL27434.1|AF430070_1	***-	peroxisomal targeting signal 2 receptor [Gossypium hirsutum]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf03552g00004.1	sp|P37287|PIGA_HUMAN	***-	Phosphatidylinositol N-acetylglucosaminyltransferase subunit A	IPR001296 (Glycosyl transferase, family 1), IPR013234 (PIGA, GPI anchor biosynthesis)	GO:0006506 (GPI anchor biosynthetic process), GO:0009058 (biosynthetic process)
Niben101Scf28267g00005.1	sp|P0CQ73|FAL1_CRYNB	*-*-	ATP-dependent RNA helicase FAL1	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01155g00008.1	sp|A7RK30|QORL2_NEMVE	****	Quinone oxidoreductase-like protein 2 homolog	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf08565g00001.1	AT4G19420.1	***-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf06042g00014.1	sp|Q8GYX0|MOB1_ARATH	***-	MOB kinase activator-like 1	IPR005301 (Mob1/phocein)	
Niben101Scf05619g00015.1	sp|P58905|AMT11_SOLLC	****	Ammonium transporter 1 member 1	IPR001905 (Ammonium transporter), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf01669g04019.1	AT3G13600.1	***-	calmodulin-binding family protein LENGTH=605		
Niben101Scf13505g02012.1	gb|KEH43443.1|	***-	hippocampus abundant transcript-like protein [Medicago truncatula]		
Niben101Scf03308g00005.1	sp|Q41916|CYT5_ARATH	****	Cysteine proteinase inhibitor 5	IPR000010 (Proteinase inhibitor I25, cystatin), IPR027214 (Cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf03099g05002.1			Unknown protein		
Niben101Scf04462g02001.1	ref|NP_001047633.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf04481g00030.1	sp|Q94KB2|MLO13_ARATH	*-*-	MLO-like protein 13	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf01701g12020.1			Unknown protein		
Niben101Scf06397g03008.1	AT3G59700.1	*-**	lectin-receptor kinase LENGTH=661	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf01218g01026.1	ref|WP_014243176.1|	****	2-oxoglutarate translocator [Bacteriovorax marinus] ref|YP_005034360.1| putative membrane transport protein [Bacteriovorax marinus SJ] emb|CBW25389.1| putative membrane transport protein [Bacteriovorax marinus SJ]	IPR001898 (Sodium/sulphate symporter)	GO:0005215 (transporter activity), GO:0006814 (sodium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Ctg13570g00002.1	AT2G26460.1	*-*-	RED family protein LENGTH=585	IPR012916 (RED-like, N-terminal)	GO:0005634 (nucleus)
Niben101Scf03116g01004.1	sp|Q7XR02|IBH1_ORYSJ	--*-	Transcription factor IBH1		
Niben101Scf01063g00005.1	sp|Q1LJ82|DNAJ_RALME	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf02423g03009.1	AT5G16690.1	*-*-	origin recognition complex subunit 3 LENGTH=734		
Niben101Scf01208g01014.1	sp|A0A361|PSBB_COFAR	****	Photosystem II CP47 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf12355g00004.1			Unknown protein		
Niben101Scf01933g08007.1	AT1G10150.1	***-	Carbohydrate-binding protein LENGTH=414		
Niben101Scf05201g06020.1	emb|CDX70878.1|	*-*-	BnaC03g09620D [Brassica napus]		
Niben101Scf02658g05007.1	sp|P47865|AQP1_BOVIN	***-	Aquaporin-1	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02805g08008.1	AT2G01260.1	*-*-	Protein of unknown function (DUF789) LENGTH=369	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf01517g07011.1	AT5G48330.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=455	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf01671g02002.1	sp|P0A9P2|DLDH_ECO57	****	Dihydrolipoyl dehydrogenase	IPR006258 (Dihydrolipoamide dehydrogenase), IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR016156 (FAD/NAD-linked reductase, dimerisation domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0004148 (dihydrolipoyl dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016668 (oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08564g00001.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR021720 (Malectin)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00028g03009.1	sp|Q110B7|RL14_TRIEI	***-	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06349g02014.1	sp|Q55G88|PSMG3_DICDI	***-	Proteasome assembly chaperone 3	IPR018788 (Proteasome assembly chaperone 3)	
Niben101Scf00063g13002.1	sp|Q9SN85|PP267_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00290g00019.1	sp|Q9FM96|PSL4_ARATH	*-*-	Glucosidase 2 subunit beta	IPR009011 (Mannose-6-phosphate receptor binding domain)	
Niben101Scf00428g11021.1	sp|Q9KT58|FADJ_VIBCH	*-*-	Fatty acid oxidation complex subunit alpha	IPR001753 (Crotonase superfamily), IPR014748 (Crontonase, C-terminal), IPR018376 (Enoyl-CoA hydratase/isomerase, conserved site), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf04329g06020.1	AT3G11470.2	*-*-	4'-phosphopantetheinyl transferase superfamily LENGTH=300	IPR008278 (4'-phosphopantetheinyl transferase superfamily)	GO:0000287 (magnesium ion binding), GO:0008897 (holo-[acyl-carrier-protein] synthase activity), GO:0009059 (macromolecule biosynthetic process)
Niben101Scf04555g00003.1	sp|Q8LFQ6|GRXC4_ARATH	***-	Glutaredoxin-C4	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf08783g00010.1	sp|Q8H1F2|RGS1_ARATH	****	Regulator of G-protein signaling 1	IPR016137 (RGS domain)	GO:0038032 (termination of G-protein coupled receptor signaling pathway)
Niben101Scf08446g00002.1	dbj|BAC57288.1|	*-*-	my [Oryza sativa Japonica Group]		
Niben101Scf02050g00011.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR000858 (S-locus glycoprotein), IPR001480 (Bulb-type lectin domain), IPR003609 (Apple-like), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0048544 (recognition of pollen)
Niben101Scf03503g01017.1	emb|CDY62977.1|	*-*-	BnaCnng41180D [Brassica napus]		
Niben101Scf02897g05003.1	emb|CDX75038.1|	***-	BnaA05g07840D [Brassica napus]		
Niben101Scf00120g02013.1	sp|Q9SKU1|CLC1_ARATH	*-**	Clathrin light chain 1	IPR000996 (Clathrin light chain)	GO:0005198 (structural molecule activity), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030130 (clathrin coat of trans-Golgi network vesicle), GO:0030132 (clathrin coat of coated pit)
Niben101Scf02510g05023.1	sp|Q6BIP4|DPB4_DEBHA	*-**	DNA polymerase epsilon subunit D	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf09570g00012.1	sp|Q9FYP9|IMA2_ORYSJ	***-	Importin subunit alpha-2	IPR016024 (Armadillo-type fold), IPR024931 (Importin subunit alpha)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006606 (protein import into nucleus), GO:0008565 (protein transporter activity)
Niben101Scf03279g01001.1	AT5G18290.1	***-	Aquaporin-like superfamily protein LENGTH=243	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf07070g02002.1	sp|Q9SGH6|DOX1_ARATH	***-	Alpha-dioxygenase 1	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08538g00008.1	sp|O80866|ORP1A_ARATH	*-*-	Oxysterol-binding protein-related protein 1A	IPR000648 (Oxysterol-binding protein)	
Niben101Scf01784g05005.1	sp|P27521|CA4_ARATH	*-*-	Chlorophyll a-b binding protein 4, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf01090g03015.1	sp|Q9XHP0|11S2_SESIN	***-	11S globulin seed storage protein 2	IPR006044 (11-S seed storage protein, plant)	GO:0045735 (nutrient reservoir activity)
Niben101Scf00136g01009.1			Unknown protein		
Niben101Scf02133g02001.1	AT1G34750.1	***-	Protein phosphatase 2C family protein LENGTH=282	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf04114g01047.1	sp|P13110|TYTR_TRYCO	--*-	Trypanothione reductase		
Niben101Scf00173g02019.1			Unknown protein		
Niben101Ctg13915g00004.1	sp|Q72MG4|IPYR_LEPIC	****	Inorganic pyrophosphatase	IPR008162 (Inorganic pyrophosphatase)	GO:0000287 (magnesium ion binding), GO:0004427 (inorganic diphosphatase activity), GO:0005737 (cytoplasm), GO:0006796 (phosphate-containing compound metabolic process)
Niben101Ctg15918g00002.1	sp|Q8GY42|NAC25_ARATH	--**	NAC transcription factor 25	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10278g01002.1	sp|Q6ZKC0|14333_ORYSJ	***-	14-3-3-like protein GF14-C	IPR000308 (14-3-3 protein), IPR023409 (14-3-3 protein, conserved site), IPR023410 (14-3-3 domain)	GO:0019904 (protein domain specific binding)
Niben101Scf01376g03017.1	sp|Q9FQ08|KU70_ARATH	*-**	ATP-dependent DNA helicase 2 subunit KU70	IPR002035 (von Willebrand factor, type A), IPR003034 (SAP domain), IPR006165 (Ku70)	GO:0000723 (telomere maintenance), GO:0003677 (DNA binding), GO:0003684 (damaged DNA binding), GO:0005634 (nucleus), GO:0006303 (double-strand break repair via nonhomologous end joining), GO:0042162 (telomeric DNA binding), GO:0043564 (Ku70:Ku80 complex)
Niben101Scf02422g00006.1	sp|Q40066|SPZX_HORVU	*-*-	Serpin-ZX	IPR000215 (Serpin family), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf01773g07027.1	sp|Q7N3U5|SUFS_PHOLL	*-*-	Cysteine desulfurase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf02922g00014.1	sp|B8JLQ0|LYRM4_DANRE	***-	LYR motif-containing protein 4	IPR008011 (Complex 1 LYR protein)	
Niben101Scf09846g01011.1	gb|KEH18175.1|	*-*-	vacuolar iron transporter-like protein [Medicago truncatula]		
Niben101Scf05112g01005.1	sp|Q8LG95|PP332_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04053g03002.1	emb|CDY42950.1|	***-	BnaA01g18040D [Brassica napus]		
Niben101Scf02929g05039.1	ref|YP_009091709.1|	*-*-	orf109 (mitochondrion) [Panax ginseng] gb|AHJ81034.1| orf109 (mitochondrion) [Panax ginseng]		
Niben101Scf16221g01008.1	sp|Q14684|RRP1B_HUMAN	*-**	Ribosomal RNA processing protein 1 homolog B	IPR010301 (Nucleolar, Nop52)	GO:0006364 (rRNA processing), GO:0030688 (preribosome, small subunit precursor)
Niben101Scf01502g02018.1	AT1G32170.1	****	xyloglucan endotransglucosylase/hydrolase 30 LENGTH=343	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf00496g00020.1	sp|Q0JHZ2|C3H11_ORYSJ	***-	Zinc finger CCCH domain-containing protein 11	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf13549g00002.1	sp|Q4V8X0|TPRA1_DANRE	***-	Transmembrane protein adipocyte-associated 1 homolog	IPR018781 (Transmembrane protein adipocyte-associated 1)	
Niben101Scf07103g01024.1	sp|Q4UK26|NUOM_RICFE	*-*-	NADH-quinone oxidoreductase subunit M	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf00152g21008.1			Unknown protein		
Niben101Scf02937g08003.1	AT5G38030.1	*-*-	MATE efflux family protein LENGTH=498	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03253g01017.1	ref|NP_001060505.1|	*-*-	product [Oryza sativa Japonica Group]	IPR005134 (Uncharacterised protein family UPF0114)	
Niben101Scf03888g01017.1	sp|Q9C6W6|TPS29_ARATH	*-**	Terpenoid synthase 29	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf04940g00002.1	emb|CDY22943.1|	--*-	BnaA01g18810D [Brassica napus]		
Niben101Scf00965g01005.1	ref|XP_003592630.1|	*-*-	Zinc finger protein [Medicago truncatula]		
Niben101Scf03494g04003.1	AT5G06850.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=794	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf23930g00002.1	ref|XP_002521949.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF40353.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04764g10046.1	sp|P92960|KAT3_ARATH	*-**	Potassium channel KAT3	IPR005821 (Ion transport domain)	GO:0005216 (ion channel activity), GO:0006811 (ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03934g04011.1	sp|F4HQX1|JAL3_ARATH	***-	Jacalin-related lectin 3	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf24238g00013.1	sp|Q93Y38|GDT13_ARATH	***-	GDT1-like protein 3	IPR001727 (Uncharacterised protein family UPF0016)	GO:0016020 (membrane)
Niben101Scf00895g00010.1	ref|WP_000646448.1|	****	NADPH:quinone reductase [Bacillus cereus] gb|EDZ53151.1| oxidoreductase, zinc-binding dehydrogenase family [Bacillus cereus AH1134] gb|KGT43027.1| NADPH:quinone reductase [Bacillus cereus]	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07393g00003.1	sp|O65743|RL24_CICAR	***-	60S ribosomal protein L24	IPR000988 (Ribosomal protein L24e-related), IPR023441 (Ribosomal protein L24e domain)	
Niben101Scf04654g00002.1	AT1G58350.1	***-	Putative serine esterase family protein LENGTH=794	IPR007751 (Domain of unknown function DUF676, lipase-like), IPR022122 (Protein of unknown function DUF3657), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Ctg04686g00002.1	sp|Q8H125|SCL5_ARATH	*-*-	Scarecrow-like protein 5	IPR005202 (Transcription factor GRAS), IPR030018 (Scarecrow-like protein 5/chitin-inducible gibberellin-responsive protein 2)	
Niben101Scf01259g03006.1			Unknown protein		
Niben101Scf07207g00003.1	sp|Q84NC5|MAD25_ORYSJ	***-	MADS-box transcription factor 25	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf03413g02023.1	sp|Q9SR72|GL32_ARATH	*-*-	Germin-like protein subfamily 3 member 2	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf03647g02011.1			Unknown protein		
Niben101Scf14662g00004.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf08937g00017.1	sp|Q0WP36|MOT2_ARATH	***-	Molybdate transporter 2		
Niben101Scf09169g01015.1	sp|Q9ZUA2|PP141_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf04441g00001.1	emb|CDY61499.1|	*-*-	BnaC02g44450D [Brassica napus]		
Niben101Scf09100g03002.1	AT5G35790.1	****	glucose-6-phosphate dehydrogenase 1 LENGTH=576	IPR001282 (Glucose-6-phosphate dehydrogenase)	GO:0004345 (glucose-6-phosphate dehydrogenase activity), GO:0006006 (glucose metabolic process), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00343g09032.1	AT1G22620.1	***-	Phosphoinositide phosphatase family protein LENGTH=912	IPR002013 (SAC domain), IPR030213 (Phosphoinositide phosphatase SAC)	GO:0007033 (vacuole organization), GO:0036092 (phosphatidylinositol-3-phosphate biosynthetic process), GO:0042578 (phosphoric ester hydrolase activity)
Niben101Ctg13795g00003.1			Unknown protein		
Niben101Scf02429g06006.1	AT2G41705.1	***-	camphor resistance CrcB family protein LENGTH=461	IPR003691 (Putative fluoride ion transporter CrcB)	GO:0016021 (integral component of membrane)
Niben101Scf01983g12001.1	AT4G25410.1	****	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=230	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00177g07008.1	AT2G21860.1	*-**	violaxanthin de-epoxidase-related LENGTH=522	IPR011038 (Calycin-like)	GO:0009507 (chloroplast), GO:0046422 (violaxanthin de-epoxidase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01175g02009.1	sp|Q5ZLP2|MTNB_CHICK	*-*-	Methylthioribulose-1-phosphate dehydratase	IPR001303 (Class II aldolase/adducin N-terminal), IPR017714 (Methylthioribulose-1-phosphate dehydratase)	GO:0005737 (cytoplasm), GO:0019509 (L-methionine biosynthetic process from methylthioadenosine), GO:0046872 (metal ion binding)
Niben101Scf06508g01001.1	sp|Q11002|CANA_DROME	*-*-	Calpain-A	IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR022684 (Peptidase C2, calpain family)	GO:0004198 (calcium-dependent cysteine-type endopeptidase activity), GO:0005622 (intracellular), GO:0006508 (proteolysis)
Niben101Scf02714g02003.1	emb|CDY61112.1|	***-	BnaA06g39450D [Brassica napus]		
Niben101Scf08091g00002.1	AT5G18030.1	***-	SAUR-like auxin-responsive protein family LENGTH=88	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf04699g01014.1	sp|Q3BAN8|RR4_PHAAO	--*-	30S ribosomal protein S4, chloroplastic		
Niben101Scf00488g01002.1	sp|Q9LV10|PTR53_ARATH	***-	Protein NRT1/ PTR FAMILY 2.11	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00687g04007.1			Unknown protein		
Niben101Scf05025g08010.1	AT1G28760.1	***-	Uncharacterized conserved protein (DUF2215) LENGTH=476	IPR019358 (Transmembrane protein 194)	
Niben101Scf04784g01003.1	ref|NP_565550.1|	****	protein RER1C1 [Arabidopsis thaliana] RecName: Full=Protein RER1C; Short=AtRER1C [Arabidopsis thaliana] dbj|BAA33862.1| AtRER1C [Arabidopsis thaliana] gb|AAL47450.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAB87102.2| putative integral membrane protein [Arabidopsis thaliana] gb|AAM19906.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAM63458.1| putative integral membrane protein [Arabidopsis thaliana] gb|AEC07439.1| protein RER1C1 [Arabidopsis thaliana]	IPR004932 (Retrieval of early ER protein Rer1)	GO:0016021 (integral component of membrane)
Niben101Scf00918g03004.1	gb|AFS35577.1|	****	salicylic acid methyl transferase [Nicotiana benthamiana]	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf03985g01005.1	sp|Q40477|ERF4_TOBAC	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf12216g00003.1	AT3G50240.1	****	ATP binding microtubule motor family protein LENGTH=1051	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf12676g00022.1	sp|B9L3S8|FTSH2_THERP	*-**	ATP-dependent zinc metalloprotease FtsH 2	IPR003959 (ATPase, AAA-type, core), IPR005936 (Peptidase, FtsH), IPR011546 (Peptidase M41, FtsH extracellular), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf11308g00002.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY), IPR018872 (Zn-cluster domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01582g02001.1	gb|AFI44261.1|	***-	cytochrome c biogenesis FC (mitochondrion) [Silene vulgaris]		
Niben101Scf08618g00005.1	sp|P29520|EF1A_BOMMO	***-	Elongation factor 1-alpha	IPR000795 (Elongation factor, GTP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf00448g05003.1	sp|Q9Z2W1|STK25_MOUSE	****	Serine/threonine-protein kinase 25	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04652g00007.1	sp|P52777|PALY_PINTA	*-**	Phenylalanine ammonia-lyase	IPR001106 (Aromatic amino acid lyase), IPR008948 (L-Aspartase-like), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf00158g06011.1	AT4G19410.1	***-	Pectinacetylesterase family protein LENGTH=391	IPR004963 (Protein notum homologue)	
Niben101Ctg11907g00002.1	AT1G03920.1	*-*-	Protein kinase family protein LENGTH=569		
Niben101Scf14755g00009.1	sp|Q142L5|UPP_BURXL	***-	Uracil phosphoribosyltransferase	IPR006083 (Phosphoribulokinase/uridine kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029057 (Phosphoribosyltransferase-like), IPR029930 (Uridine kinase-like protein, plant)	GO:0004849 (uridine kinase activity), GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0044206 (UMP salvage)
Niben101Scf13962g00003.1	AT4G18650.1	****	transcription factor-related LENGTH=232	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09705g00003.1	sp|Q9M088|E135_ARATH	***-	Glucan endo-1,3-beta-glucosidase 5	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02558g00029.1	gb|ABV21218.1|	***-	[Arabidopsis thaliana]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf00528g01012.1	sp|P59226|H32_ARATH	***-	Histone H3.2	IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf06236g03010.1	sp|Q9LEX0|P2A13_ARATH	***-	F-box protein PP2-A13	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf02462g03001.1	sp|Q5TJE6|PFD6_CANFA	*-**	Prefoldin subunit 6	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex), GO:0051082 (unfolded protein binding)
Niben101Scf05048g00007.1	emb|CDX93338.1|	***-	BnaC04g45580D [Brassica napus]		
Niben101Scf01602g06012.1	AT4G33160.1	***-	F-box family protein LENGTH=457	IPR001810 (F-box domain), IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf08812g02006.1	sp|Q7ZUQ3|STK3_DANRE	--**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13870g00002.1			Unknown protein		
Niben101Scf13242g00001.1	sp|Q9SIT9|NFYB7_ARATH	*-**	Nuclear transcription factor Y subunit B-7	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf36738g00008.1	sp|P84080|ARF1_BOVIN	***-	ADP-ribosylation factor 1	IPR003579 (Small GTPase superfamily, Rab type), IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf11105g00001.1	emb|CAA78966.1|	-**-	pollen preferential protein [Lilium longiflorum] emb|CAA78977.1| pollen preferential protein [Lilium longiflorum] gb|AAA33399.1| pollen preferential protein [Lilium longiflorum]		
Niben101Scf09501g01025.1	sp|B2JVU2|FTSH_BURP8	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR008984 (SMAD/FHA domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf04802g01015.1	AT4G32660.1	****	Protein kinase superfamily protein LENGTH=400	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01787g00041.1	gb|ACZ52183.1|	***-	ribosomal protein L10 (mitochondrion) [Digitalis purpurea]		
Niben101Scf01505g00005.1	sp|Q9LIC2|TMN7_ARATH	***-	Transmembrane 9 superfamily member 7	IPR004240 (Nonaspanin (TM9SF)), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane)
Niben101Scf04765g02001.1	ref|XP_003607265.1|	***-	Fasciclin-like arabinogalactan protein [Medicago truncatula]	IPR000782 (FAS1 domain)	
Niben101Scf05916g02016.1	gb|EJW86109.1|	--*-	atypical/RIO/RIO2 protein kinase [Wuchereria bancrofti]		
Niben101Scf01612g00004.1			Unknown protein		
Niben101Scf10575g01005.1	sp|C7Z6H2|LIS1_NECH7	*-*-	Nuclear distribution protein PAC1	IPR013535 (PUL), IPR015155 (PLAA family ubiquitin binding, PFU), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf08203g00013.1	gb|ABA91336.1|	--*-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf03326g05014.1	AT3G02900.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=162		
Niben101Scf29144g00001.1	sp|Q08DI6|RNF11_BOVIN	*-*-	RING finger protein 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07951g02019.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02576g00011.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03459g01004.1	sp|Q39255|SKP1A_ARATH	***-	SKP1-like protein 1A	IPR001232 (S-phase kinase-associated protein 1-like)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf15631g00005.1			Unknown protein		
Niben101Scf01438g06004.1	sp|Q8VC66|ADIP_MOUSE	*-*-	Afadin- and alpha-actinin-binding protein	IPR021622 (Afadin/alpha-actinin-binding)	
Niben101Scf01459g01006.1	AT5G17770.1	****	NADH:cytochrome B5 reductase 1 LENGTH=281	IPR001433 (Oxidoreductase FAD/NAD(P)-binding), IPR001834 (NADH:cytochrome b5 reductase (CBR)), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf23113g00025.1	gb|AAL87025.1|	*-**	cell wall protein Exp1 precursor [Mirabilis jalapa]	IPR002963 (Expansin)	GO:0009664 (plant-type cell wall organization)
Niben101Scf01866g01015.1	sp|Q9SYK1|PPR11_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf01100g02002.1	ref|XP_002532208.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF30177.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02354g10001.1	sp|Q3SZX8|CCD25_BOVIN	***-	Coiled-coil domain-containing protein 25	IPR008532 (Domain of unknown function DUF814)	
Niben101Scf04205g04013.1	sp|Q55B11|VTA1_DICDI	*-*-	Vacuolar protein sorting-associated protein VTA1 homolog	IPR023175 (Vacuolar protein sorting-associate protein Vta1/Callose synthase, N-terminal domain)	
Niben101Scf02837g04012.1	sp|O49621|MLO1_ARATH	***-	MLO-like protein 1	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf02723g00010.1	gb|AFI99127.1|	***-	zinc finger protein Sdr4 [Oryza sativa Japonica Group]		
Niben101Scf32649g00006.1	AT3G10560.1	***-	Cytochrome P450 superfamily protein LENGTH=514	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf12885g00005.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf39519g00003.1	sp|Q9C6X2|SCAM4_ARATH	*-**	Secretory carrier-associated membrane protein 4	IPR007273 (SCAMP)	GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf02445g00010.1	AT4G14600.1	***-	Target SNARE coiled-coil domain protein LENGTH=137	IPR000727 (Target SNARE coiled-coil domain)	GO:0005515 (protein binding)
Niben101Scf06625g01002.1	sp|Q9XI00|SKI32_ARATH	--*-	F-box protein 7	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf28503g00001.1	sp|Q5VU65|P210L_HUMAN	***-	Nuclear pore membrane glycoprotein 210-like	IPR008964 (Invasin/intimin cell-adhesion)	
Niben101Scf04596g00008.1	sp|Q8W575|CSN3_ARATH	***-	COP9 signalosome complex subunit 3	IPR000717 (Proteasome component (PCI) domain)	GO:0005515 (protein binding)
Niben101Scf01664g00027.1	AT2G17840.1	***-	Senescence/dehydration-associated protein-related LENGTH=452	IPR009686 (Senescence/spartin-associated)	
Niben101Scf06684g01013.1			Unknown protein		
Niben101Scf09501g01026.1	AT4G02460.1	*-**	DNA mismatch repair protein, putative LENGTH=923	IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR028831 (DNA mismatch repair protein Pms1/Pms2)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding), GO:0032300 (mismatch repair complex)
Niben101Scf34892g00003.1	sp|Q9M907|PP217_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01485g02003.1	ref|XP_007039626.1|	*-*-	Pleckstrin (PH) domain-containing protein isoform 3 [Theobroma cacao] gb|EOY24127.1| Pleckstrin (PH) domain-containing protein isoform 3 [Theobroma cacao]		
Niben101Scf00087g00005.1	AT4G31860.1	****	Protein phosphatase 2C family protein LENGTH=357	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf05886g01007.1	AT4G22290.1	*-*-	Ubiquitin-specific protease family C19-related protein LENGTH=445		
Niben101Scf00777g06012.1	sp|Q9LK09|SYP32_ARATH	***-	Syntaxin-32	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf00051g00011.1	sp|Q05196|PABP5_ARATH	*-**	Polyadenylate-binding protein 5	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf15538g00005.1	AT4G17610.1	***-	tRNA/rRNA methyltransferase (SpoU) family protein LENGTH=1850		
Niben101Scf05692g07023.1	sp|A1TCB8|TIG_MYCVP	***-	Trigger factor	IPR005215 (Trigger factor), IPR027304 (Trigger factor/SurA domain)	GO:0006457 (protein folding), GO:0015031 (protein transport)
Niben101Scf19483g00003.1	ref|NP_001190961.1|	--*-	DNA binding / transcription factor [Arabidopsis thaliana] gb|AEE87030.1| DNA binding / transcription factor [Arabidopsis thaliana]		
Niben101Scf02070g00004.1			Unknown protein		
Niben101Scf04432g04004.1	sp|Q9M9W1|RL222_ARATH	***-	60S ribosomal protein L22-2	IPR002671 (Ribosomal protein L22e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf10065g01014.1	AT2G33620.1	****	AT hook motif DNA-binding family protein LENGTH=351	IPR005175 (Domain of unknown function DUF296), IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Scf04609g00008.1	AT3G24240.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf00332g05017.1	gb|KFB86097.1|	***-	dihydrolipoamide dehydrogenase [Calothrix sp. 336/3]	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR016156 (FAD/NAD-linked reductase, dimerisation domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0016668 (oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06236g03011.1	sp|Q9Z2W1|STK25_MOUSE	*-**	Serine/threonine-protein kinase 25	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00621g11011.1	sp|Q8W0Z6|AP5M_ARATH	****	AP-5 complex subunit mu	IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf03371g01029.1			Unknown protein		
Niben101Scf13593g00007.1	gb|ACZ64221.1|	***-	RPM1 interacting protein 4 transcript 2 [Lactuca saligna]	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf00146g00009.1	sp|Q92611|EDEM1_HUMAN	****	ER degradation-enhancing alpha-mannosidase-like protein 1	IPR001382 (Glycoside hydrolase, family 47)	GO:0004571 (mannosyl-oligosaccharide 1,2-alpha-mannosidase activity), GO:0005509 (calcium ion binding), GO:0016020 (membrane)
Niben101Scf02033g02010.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf02137g00007.1	sp|Q8S2E6|Y1235_ORYSJ	*-*-	B3 domain-containing protein	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf06081g01013.1	dbj|BAB02453.1|	*-**	abscisic acid responsive elements-binding factor [Arabidopsis thaliana]	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00454g05002.1	sp|Q7XJE6|MCA1_ARATH	***-	Metacaspase-1	IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04714g02003.1	AT3G60670.1	***-	PLATZ transcription factor family protein LENGTH=245	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf00585g04011.1	sp|C5D6U5|MENE_GEOSW	***-	2-succinylbenzoate--CoA ligase	IPR000873 (AMP-dependent synthetase/ligase), IPR015422 (Pyridoxal phosphate-dependent transferase, major region, subdomain 2), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00472g03022.1	sp|Q7V8I3|THIE_PROMM	****	Thiamine-phosphate synthase	IPR003733 (Thiamine phosphate synthase)	GO:0003824 (catalytic activity), GO:0004789 (thiamine-phosphate diphosphorylase activity), GO:0009228 (thiamine biosynthetic process)
Niben101Scf00013g01005.1	sp|Q8LC03|ATB13_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-13	IPR002913 (START domain), IPR009057 (Homeodomain-like), IPR013978 (MEKHLA), IPR023393 (START-like domain)	GO:0003677 (DNA binding), GO:0008289 (lipid binding)
Niben101Scf06154g01005.1	sp|Q9LL85|WHY1_SOLTU	****	Single-stranded DNA-binding protein WHY1, chloroplastic	IPR013742 (Plant transcription factor)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf15515g01004.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf05710g01001.1	sp|O24030|PSA7_SOLLC	****	Proteasome subunit alpha type-7	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf05437g03015.1	sp|Q86TP1|PRUNE_HUMAN	--*-	Protein prune homolog		
Niben101Scf07199g00002.1	emb|CAD54298.1|	*-*-	bHLH transcription factor [Brassica napus]	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04383g00010.1	sp|Q1LXS2|PSMG2_DANRE	***-	Proteasome assembly chaperone 2	IPR019151 (Proteasome assembly chaperone 2)	
Niben101Scf07724g01007.1	emb|CDY55867.1|	***-	BnaCnng29490D [Brassica napus]		
Niben101Scf00113g06009.1	sp|Q9FJK7|CCC12_ARATH	*-**	Cyclin-C1-2	IPR015429 (Cyclin C/H/T/L)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0016591 (DNA-directed RNA polymerase II, holoenzyme), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf10162g00001.1	AT1G10690.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=110		
Niben101Scf06004g00013.1	sp|A4XSY1|METE_PSEMY	*-*-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase		
Niben101Scf15038g00004.1	sp|Q9FIK1|Y5780_ARATH	*-*-	BTB/POZ domain-containing protein	IPR027356 (NPH3 domain), IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0009958 (positive gravitropism)
Niben101Scf05837g06004.1	sp|Q9FGF0|PGML1_ARATH	***-	Phosphoglycerate mutase-like protein 1	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf07121g02003.1	sp|O35654|DPOD2_MOUSE	*-**	DNA polymerase delta subunit 2	IPR007185 (DNA polymerase alpha/epsilon, subunit B), IPR024826 (DNA polymerase delta/II small subunit family)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication)
Niben101Scf04765g00002.1	AT4G04950.1	***-	thioredoxin family protein LENGTH=488	IPR004480 (Monothiol glutaredoxin-related), IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf33820g00004.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR006564 (Zinc finger, PMZ-type)	GO:0008270 (zinc ion binding)
Niben101Scf02568g01002.1	ref|NP_001053041.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf10329g01016.1	sp|P52888|THOP1_HUMAN	*-*-	Thimet oligopeptidase	IPR024077 (Neurolysin/Thimet oligopeptidase, domain 2), IPR024080 (Neurolysin/Thimet oligopeptidase, N-terminal)	
Niben101Scf14122g00013.1	AT2G01480.1	***-	O-fucosyltransferase family protein LENGTH=567	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf04114g00039.1	emb|CDX71650.1|	*-*-	BnaC09g26910D [Brassica napus]		
Niben101Scf08267g00001.1	dbj|BAD44345.1|	--*-	retrotransposon like protein [Arabidopsis thaliana]		
Niben101Scf02429g06007.1	sp|Q9FFQ5|FLS3_ARATH	***-	Flavonol synthase 3	IPR002283 (Isopenicillin N synthase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0005506 (iron ion binding), GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01655g02005.1	AT4G00525.1	***-	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). LENGTH=140		
Niben101Scf00202g07013.1	sp|B8G1W8|RL23_DESHD	--*-	50S ribosomal protein L23	IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00290g01011.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf01640g02004.1	AT1G71090.1	***-	Auxin efflux carrier family protein LENGTH=457	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf07829g02001.1	AT5G20100.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=113		
Niben101Scf02929g01003.1	sp|P60620|COX1_ARATH	****	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf12160g01001.1	AT3G07470.1	***-	Protein of unknown function, DUF538 LENGTH=169	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf07288g01005.1	sp|Q609G2|UBIG_METCA	*-**	Ubiquinone biosynthesis O-methyltransferase	IPR025774 (Tocopherol O-methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf00488g04029.1	gb|ADV56701.1|	*-*-	zinc finger protein [Phaseolus vulgaris]		
Niben101Scf01563g03003.1	sp|Q8WUK0|PTPM1_HUMAN	*-*-	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1	IPR024950 (Dual specificity phosphatase), IPR029021 (Protein-tyrosine phosphatase-like)	
Niben101Scf30845g00003.1	AT5G02180.1	***-	Transmembrane amino acid transporter family protein LENGTH=550	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf02709g03029.1	sp|Q9SCT2|PP277_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf01281g08005.1	sp|Q4KLF3|KTI12_XENLA	*-*-	Protein KTI12 homolog	IPR013641 (Chromatin associated protein KTI12)	
Niben101Scf05422g00020.1	sp|P0A551|DPO1_MYCBO	*-**	DNA polymerase I	IPR002421 (5'-3' exonuclease, N-terminal), IPR029060 (PIN domain-like)	GO:0003677 (DNA binding)
Niben101Scf02829g09014.1	sp|O24172|ALL6_OLEEU	***-	Major pollen allergen Ole e 6	IPR015333 (Pollen allergen ole e 6)	
Niben101Scf01912g00006.1	ref|NP_001233952.1|	*-**	protein tyr tyrosine phosphatase [Solanum lycopersicum]	IPR014756 (Immunoglobulin E-set), IPR029021 (Protein-tyrosine phosphatase-like), IPR030066 (Putative phosphatase LSF1, chloroplastic)	GO:0005983 (starch catabolic process), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity)
Niben101Scf00963g05034.1	sp|Q9SVP7|PP307_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01367g00021.1	AT2G31010.1	***-	Protein kinase superfamily protein LENGTH=775		
Niben101Scf00853g05001.1	sp|Q8WUA2|PPIL4_HUMAN	*-*-	Peptidyl-prolyl cis-trans isomerase-like 4	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR029000 (Cyclophilin-like domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01966g02003.1	sp|Q05865|FOLC_BACSU	****	Folylpolyglutamate synthase	IPR001645 (Folylpolyglutamate synthetase)	GO:0004326 (tetrahydrofolylpolyglutamate synthase activity), GO:0005524 (ATP binding), GO:0009058 (biosynthetic process), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0016874 (ligase activity)
Niben101Scf00051g05002.1	sp|A2YS06|ATG8C_ORYSI	***-	Autophagy-related protein 8C	IPR004241 (Autophagy protein Atg8 ubiquitin like), IPR029071 (Ubiquitin-related domain)	
Niben101Scf02929g05121.1	sp|Q54JC8|PUR4_DICDI	*-*-	Phosphoribosylformylglycinamidine synthase	IPR016188 (PurM, N-terminal-like)	GO:0003824 (catalytic activity)
Niben101Scf05142g00015.1	sp|Q18CF2|RS12_PEPD6	--*-	30S ribosomal protein S12	IPR006032 (Ribosomal protein S12/S23)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Ctg14289g00001.1	gb|KEH20186.1|	*-*-	carboxyl-terminal peptidase [Medicago truncatula]	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf03670g02008.1	sp|Q9SB50|AP4M_ARATH	****	AP-4 complex subunit mu	IPR001392 (Clathrin adaptor, mu subunit), IPR028565 (Mu homology domain)	GO:0005515 (protein binding), GO:0006810 (transport), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030131 (clathrin adaptor complex)
Niben101Scf00503g10001.1	sp|Q9M153|GDL61_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf06087g12012.1	sp|Q9SRD8|EC11_ARATH	***-	Egg cell-secreted protein 1.1	IPR008502 (Prolamin-like domain)	
Niben101Scf01818g00015.1	sp|P70191|TRAF5_MOUSE	*-*-	TNF receptor-associated factor 5	IPR008974 (TRAF-like)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf05004g02005.1	sp|Q9Y2D4|EXC6B_HUMAN	****	Exocyst complex component 6B	IPR007225 (Exocyst complex subunit Sec15-like)	GO:0000145 (exocyst), GO:0006904 (vesicle docking involved in exocytosis)
Niben101Scf10314g04039.1	sp|Q9LSL9|PP445_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07109g00007.1	sp|P81393|MYB08_ANTMA	***-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf29276g00003.1	sp|P35279|RAB6A_MOUSE	***-	Ras-related protein Rab-6A	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00360g02006.1	gb|ABA96108.1|	--*-	hAT family dimerisation domain containing protein [Oryza sativa Japonica Group]	IPR003656 (Zinc finger, BED-type)	GO:0003677 (DNA binding)
Niben101Scf29047g00003.1			Unknown protein		
Niben101Scf25069g01006.1	sp|O80437|GPAT6_ARATH	***-	Glycerol-3-phosphate 2-O-acyltransferase 6	IPR002123 (Phospholipid/glycerol acyltransferase), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf09620g02008.1	emb|CDX80033.1|	*-*-	BnaA05g01230D [Brassica napus]		
Niben101Scf08926g08002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg16342g00001.1	sp|Q54UK0|PLDA_DICDI	--*-	Phospholipase D A	IPR015679 (Phospholipase D family)	
Niben101Scf00294g03035.1	sp|Q6ZI17|OML2_ORYSJ	*-*-	Protein MEI2-like 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00712g16002.1	AT1G76310.1	****	CYCLIN B2;4 LENGTH=431	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf03142g00006.1	AT1G67290.1	***-	glyoxal oxidase-related protein LENGTH=615	IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR014756 (Immunoglobulin E-set), IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf03202g04019.1	sp|Q8K2V6|IPO11_MOUSE	*-*-	Importin-11	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf09578g03003.1	AT1G69760.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=177		
Niben101Scf04901g00022.1	AT2G06005.1	***-	FRIGIDA interacting protein 1 LENGTH=355	IPR029399 (TMEM192 family)	
Niben101Scf00646g06011.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf12102g02009.1	sp|Q84TH6|DIR23_ARATH	***-	Dirigent protein 23	IPR004265 (Plant disease resistance response protein)	
Niben101Scf04436g15020.1	sp|Q0WPZ6|PP158_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03274g03013.1	ref|XP_002529925.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF32479.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11469g00018.1	sp|P50699|TLPH_ARATH	*-*-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf07682g02003.1	ref|XP_002532214.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF30183.1| conserved hypothetical protein [Ricinus communis]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf01911g06001.1			Unknown protein		
Niben101Scf03738g01005.1	ref|WP_030734978.1|	*-*-	3-dehydroquinate dehydratase [Streptomyces sp. NRRL F-2890]	IPR001943 (UVR domain)	GO:0005515 (protein binding)
Niben101Scf01100g01004.1	sp|Q6DDW6|GPHR_XENLA	***-	Golgi pH regulator	IPR015672 (The Golgi pH Regulator), IPR025969 (Abscisic acid G-protein coupled receptor-like domain)	
Niben101Scf00646g01001.1	sp|P33144|BIMB_EMENI	*-*-	Separin	IPR005314 (Peptidase C50, separase), IPR011990 (Tetratricopeptide-like helical domain), IPR030397 (SEPARIN core domain)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006508 (proteolysis), GO:0008233 (peptidase activity)
Niben101Scf03515g00029.1	sp|A4QL19|PSAA_DRANE	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf05664g03021.1			Unknown protein		
Niben101Scf03766g03001.1	sp|B7ZUF3|SETD3_XENTR	***-	Histone-lysine N-methyltransferase setd3	IPR015353 (Rubisco LSMT, substrate-binding domain)	
Niben101Scf00341g05008.1	sp|Q6UVM3|KCNT2_HUMAN	*-*-	Potassium channel subfamily T member 2	IPR011992 (EF-hand domain pair), IPR013099 (Two pore domain potassium channel domain)	
Niben101Scf03854g03018.1			Unknown protein		
Niben101Scf00586g03002.1			Unknown protein		
Niben101Scf05155g00013.1	AT1G19980.1	*-*-	cytomatrix protein-related LENGTH=342		
Niben101Scf15263g00005.1	sp|Q9XIN8|FB119_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf12355g00003.1	sp|Q9UJW2|TINAG_HUMAN	--*-	Tubulointerstitial nephritis antigen		
Niben101Scf08193g00024.1	sp|Q987E7|RBSA2_RHILO	--**	Ribose import ATP-binding protein RbsA 2	IPR013283 (ABC transporter ABCE), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf09116g01002.1			Unknown protein		
Niben101Scf03350g03005.1	sp|A4VS81|MNME_PSEU5	--*-	tRNA modification GTPase MnmE	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf03360g00005.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf27265g00023.1			Unknown protein		
Niben101Scf04367g00010.1	gb|AAS17940.1|	*-*-	TATA binding protein associated factor 6b isoform 3 [Arabidopsis thaliana]		
Niben101Scf01990g00016.1	sp|P29060|CHIA_TOBAC	***-	Acidic endochitinase	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05389g00010.1	sp|P34930|HS71A_PIG	*-*-	Heat shock 70 kDa protein 1A	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf04375g10010.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01859g08019.1			Unknown protein		
Niben101Scf07937g00003.1	gb|ADL70486.1|	--*-	indole-3-acetic acid inducible 2 [Arabidopsis thaliana]	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf07881g00001.1	ref|XP_002528353.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF34025.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06517g00014.1			Unknown protein		
Niben101Scf03271g02024.1	ref|NP_001053015.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf07020g00004.1			Unknown protein		
Niben101Scf05262g00022.1	sp|E9Q634|MYO1E_MOUSE	*-**	Unconventional myosin-Ie	IPR010926 (Myosin tail 2)	GO:0003774 (motor activity), GO:0016459 (myosin complex)
Niben101Scf03203g03005.1	AT3G12380.2	***-	actin-related protein 5 LENGTH=730	IPR004000 (Actin family)	GO:0006281 (DNA repair), GO:0006355 (regulation of transcription, DNA-templated), GO:0031011 (Ino80 complex)
Niben101Scf02074g06085.1	sp|Q9FK25|OMT1_ARATH	--*-	Flavone 3'-O-methyltransferase 1		
Niben101Scf04671g06008.1	AT1G03445.1	*-**	Serine/threonine protein phosphatase family protein LENGTH=793	IPR012391 (Serine/threonine protein phosphatase, BSU1), IPR029052 (Metallo-dependent phosphatase-like)	GO:0004721 (phosphoprotein phosphatase activity), GO:0005506 (iron ion binding), GO:0005515 (protein binding), GO:0016787 (hydrolase activity), GO:0030145 (manganese ion binding)
Niben101Scf03114g04011.1	ref|WP_033003997.1|	***-	glutamine cyclotransferase [Xanthomonas oryzae]	IPR007788 (Glutamine cyclotransferase), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02551g01007.1			Unknown protein		
Niben101Scf00207g05027.1	sp|Q3SER0|RL34_THIDA	--*-	50S ribosomal protein L34	IPR000271 (Ribosomal protein L34)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf15666g00009.1	sp|P74518|LRTA_SYNY3	***-	Light-repressed protein A homolog	IPR003489 (Ribosomal protein S30Ae/sigma 54 modulation protein)	GO:0044238 (primary metabolic process)
Niben101Scf02693g02015.1	AT4G02030.2	***-	Vps51/Vps67 family (components of vesicular transport) protein LENGTH=805		
Niben101Scf00324g01010.1	ref|WP_025882446.1|	*-*-	MULTISPECIES: hypothetical protein [Prochlorococcus]	IPR021659 (Protein of unknown function DUF3252)	
Niben101Scf09427g01003.1			Unknown protein		
Niben101Scf08899g00005.1	sp|C5FHU9|SKP1_ARTOC	****	E3 ubiquitin ligase complex SCF subunit sconC	IPR016072 (SKP1 component, dimerisation)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf06248g00012.1	emb|CDY31674.1|	*-*-	BnaA05g08730D [Brassica napus]		
Niben101Scf01677g06013.1	ref|XP_002532211.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF30180.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03166g00016.1	sp|O65555|Y4094_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0051260 (protein homooligomerization)
Niben101Scf06596g03018.1	gb|KEH41789.1|	*-*-	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf02568g02006.1	AT4G34980.1	****	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00831g02019.1	sp|Q9SV13|SUT31_ARATH	*-**	Sulfate transporter 3.1	IPR001902 (Sulphate anion transporter)	GO:0008271 (secondary active sulfate transmembrane transporter activity), GO:0008272 (sulfate transport), GO:0009507 (chloroplast), GO:0015116 (sulfate transmembrane transporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02656g04002.1	sp|Q0K621|RL23_CUPNH	--*-	50S ribosomal protein L23	IPR013025 (Ribosomal protein L25/L23)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06795g02001.1	sp|Q9SDS7|VATC_ARATH	*-**	V-type proton ATPase subunit C	IPR004907 (ATPase, V1 complex, subunit C)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033180 (proton-transporting V-type ATPase, V1 domain)
Niben101Scf00801g04014.1			Unknown protein		
Niben101Scf04638g01013.1	AT3G05840.2	****	Protein kinase superfamily protein LENGTH=409	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06183g01001.1	sp|Q9XZG5|PSA5_TRYBB	****	Proteasome subunit alpha type-5	IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf06761g00016.1	AT4G32050.1	***-	neurochondrin family protein LENGTH=618	IPR008709 (Neurochondrin)	
Niben101Scf15227g00008.1	AT3G50310.1	****	mitogen-activated protein kinase kinase kinase 20 LENGTH=342	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00723g00013.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06397g00010.1	ref|XP_002525171.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF37137.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04007g07024.1	sp|O48724|WEB1_ARATH	***-	Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1	IPR008545 (WEB family)	
Niben101Scf06715g02002.1	sp|Q9C6X2|SCAM4_ARATH	****	Secretory carrier-associated membrane protein 4	IPR007273 (SCAMP)	GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf02762g01003.1	sp|Q6L3D5|NU1C_SACHY	****	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H), IPR010226 (NADH-quinone oxidoreductase, chain I), IPR017896 (4Fe-4S ferredoxin-type, iron-sulphur binding domain)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0016020 (membrane), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05029g02014.1	sp|Q9FJQ5|EIL5_ARATH	*-*-	ETHYLENE INSENSITIVE 3-like 5 protein		
Niben101Scf18531g00002.1	AT5G03795.1	*-*-	Exostosin family protein LENGTH=518	IPR004263 (Exostosin-like)	
Niben101Scf22800g00002.1	sp|Q21988|AMX1_CAEEL	--*-	Amine oxidase family member 1	IPR002937 (Amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf32851g00006.1	sp|P49211|RL321_ARATH	***-	60S ribosomal protein L32-1	IPR001515 (Ribosomal protein L32e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08526g04005.1			Unknown protein		
Niben101Scf00953g04006.1			Unknown protein		
Niben101Scf07691g00019.1	sp|Q940Y3|ARID3_ARATH	--*-	AT-rich interactive domain-containing protein 3		
Niben101Scf02390g01019.1	sp|B5E1P7|GATA_STRP4	*-*-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf07470g01013.1	ref|XP_010109905.1|	--*-	D-2-hydroxyglutarate dehydrogenase [Morus notabilis] gb|EXC24874.1| D-2-hydroxyglutarate dehydrogenase [Morus notabilis]		
Niben101Scf00671g00011.1	sp|P93047|HMGB3_ARATH	***-	High mobility group B protein 3	IPR009071 (High mobility group box domain)	
Niben101Scf05708g00002.1	sp|O29494|RL7A_ARCFU	***-	50S ribosomal protein L7Ae	IPR018492 (Ribosomal protein L7Ae/L8/Nhp2 family), IPR029064 (50S ribosomal protein L30e-like)	GO:0003723 (RNA binding), GO:0005730 (nucleolus), GO:0030529 (ribonucleoprotein complex), GO:0042254 (ribosome biogenesis)
Niben101Scf00717g01006.1	sp|Q9SH27|LOR4_ARATH	***-	Protein LURP-one-related 4	IPR025659 (Tubby C-terminal-like domain)	
Niben101Scf00898g02014.1	emb|CDY14706.1|	***-	BnaC05g19630D [Brassica napus]	IPR007679 (Protein of unknown function DUF569), IPR008999 (Actin cross-linking), IPR016093 (MIR motif)	GO:0016020 (membrane)
Niben101Scf05300g01006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10608g03004.1	sp|Q84LH3|WEX_ARATH	****	Werner Syndrome-like exonuclease	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf01304g11002.1			Unknown protein		
Niben101Scf06674g00006.1			Unknown protein		
Niben101Scf03380g02006.1	ref|XP_003599472.1|	--*-	Defensin-like protein [Medicago truncatula]		
Niben101Scf08168g02004.1	sp|P82787|DEF19_ARATH	-**-	Defensin-like protein 19	IPR003614 (Knottin, scorpion toxin-like)	GO:0006952 (defense response)
Niben101Scf03848g01006.1	ref|XP_002514181.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF48135.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04829g01001.1	sp|Q8LPL2|PTR32_ARATH	***-	Protein NRT1/ PTR FAMILY 1.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf03823g02024.1	sp|P33083|AX6B_SOYBN	-**-	Auxin-induced protein 6B	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03389g00024.1			Unknown protein		
Niben101Scf08704g02002.1	sp|O87331|RELA_CORGL	*-*-	GTP pyrophosphokinase	IPR007685 (RelA/SpoT)	GO:0015969 (guanosine tetraphosphate metabolic process)
Niben101Scf00163g22003.1	sp|Q40478|ERF5_TOBAC	****	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07825g02009.1	sp|B9EYD3|PLA4_ORYSJ	***-	Phospholipase A1-II 4	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf05222g06008.1	sp|Q9XGM2|MRE11_ARATH	*-*-	Double-strand break repair protein MRE11		
Niben101Scf08007g01005.1	sp|Q93VI8|TLP7_ARATH	***-	Tubby-like F-box protein 7	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf02553g01008.1	ref|XP_007028189.1|	--*-	S-aden isoform 2 [Theobroma cacao]		
Niben101Scf05319g00004.1	ref|WP_029081808.1|	***-	acyl-CoA synthetase [Bradyrhizobium sp. th.b2]	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf11416g00019.1	sp|Q6IRP4|ABHDD_XENLA	--*-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf13966g00010.1			Unknown protein		
Niben101Scf14708g00019.1	sp|E1BK52|STK10_BOVIN	*-**	Serine/threonine-protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08259g02003.1	sp|Q54UB1|TRM6_DICDI	***-	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6	IPR007316 (Eukaryotic initiation factor 3, gamma subunit)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf02831g00002.1	sp|B8BJV8|ALFL8_ORYSI	*-*-	PHD finger protein ALFIN-LIKE 8	IPR021998 (Alfin)	GO:0006355 (regulation of transcription, DNA-templated), GO:0042393 (histone binding)
Niben101Scf15366g00011.1	sp|P87027|SPG1_SCHPO	*-*-	Septum-promoting GTP-binding protein 1		
Niben101Scf03775g00002.1	tpg|DAA40722.1|	*-*-	TPA: hypothetical protein ZEAMMB73_194935 [Zea mays]		
Niben101Scf01062g06001.1	sp|Q9ZUU0|WRK44_ARATH	*-**	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09659g02003.1			Unknown protein		
Niben101Scf03392g09005.1	sp|Q9Y305|ACOT9_HUMAN	*-*-	Acyl-coenzyme A thioesterase 9, mitochondrial	IPR029069 (HotDog domain)	
Niben101Scf04776g01002.1	sp|Q9ZT66|E134_MAIZE	***-	Endo-1,3;1,4-beta-D-glucanase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf04292g10011.1			Unknown protein		
Niben101Scf04060g02019.1	ref|WP_011827370.1|	-***	universal stress protein [Prochlorococcus marinus] ref|YP_001018793.1| universal stress protein [Prochlorococcus marinus str. MIT 9303] gb|ABM79528.1| Universal stress protein (Usp) [Prochlorococcus marinus str. MIT 9303]	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf12148g00001.1	sp|B4TMG8|AES_SALSV	*-*-	Acetyl esterase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf20985g00001.1	sp|Q9ASZ8|PPR37_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf11497g00009.1	ref|WP_000732768.1|	--*-	collagen-binding protein [Bacillus cereus] gb|EJR16348.1| LPXTG-domain-containing protein cell wall anchor domain [Bacillus cereus VD014]		
Niben101Ctg06009g00001.1			Unknown protein		
Niben101Scf00592g15016.1	sp|Q6P7W0|SENP6_MOUSE	*-*-	Sentrin-specific protease 6	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf04044g14003.1	sp|O80877|EF4L1_ARATH	*-*-	Protein ELF4-LIKE 1	IPR009741 (Protein of unknown function DUF1313)	
Niben101Scf15995g01011.1	AT2G34210.1	*-*-	Transcription elongation factor Spt5 LENGTH=989	IPR008991 (Translation protein SH3-like domain)	
Niben101Ctg14017g00003.1	sp|Q9LVE0|PTR33_ARATH	***-	Protein NRT1/ PTR FAMILY 6.4	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf12858g00003.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf02025g02002.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03392g01010.1	AT3G59780.1	***-	Rhodanese/Cell cycle control phosphatase superfamily protein LENGTH=686		
Niben101Scf07182g06003.1	sp|Q42517|PERN_ARMRU	*-**	Peroxidase N	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00870g13008.1	sp|Q9SR71|TAF12_ARATH	--**	Transcription initiation factor TFIID subunit 12	IPR009072 (Histone-fold)	GO:0005669 (transcription factor TFIID complex), GO:0006352 (DNA-templated transcription, initiation), GO:0046982 (protein heterodimerization activity)
Niben101Scf01100g05005.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03979g01015.1	AT5G21970.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=449	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf01141g11003.1	sp|P42752|CCD21_ARATH	***-	Cyclin-D2-1	IPR013763 (Cyclin-like)	
Niben101Scf04477g02004.1	sp|Q9FNP8|RS193_ARATH	*-*-	40S ribosomal protein S19-3	IPR001266 (Ribosomal protein S19e), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04801g01026.1	AT5G50000.1	*-**	Protein kinase superfamily protein LENGTH=385	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08446g03021.1	AT4G32480.1	***-	Protein of unknown function (DUF506) LENGTH=287	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf09910g00001.1	sp|Q9FIC6|GL117_ARATH	***-	Germin-like protein subfamily 1 member 17	IPR001929 (Germin)	GO:0030145 (manganese ion binding)
Niben101Scf02133g03020.1	sp|Q9FY75|POT7_ARATH	*-**	Potassium transporter 7	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf03532g00003.1	sp|Q7U4J2|RL29_SYNPX	-**-	50S ribosomal protein L29	IPR001854 (Ribosomal protein L29)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01481g03005.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf01412g00013.1	ref|NP_001057042.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf01155g00009.1	sp|O80929|RL361_ARATH	***-	60S ribosomal protein L36-1	IPR000509 (Ribosomal protein L36e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00775g02007.1	sp|Q63880|EST3A_MOUSE	--*-	Carboxylesterase 3A	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf02124g00017.1	gb|KEH28577.1|	***-	Snf1-related kinase interactor 1, putative [Medicago truncatula]		
Niben101Scf00541g05003.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06087g04002.1	sp|Q8RWL2|CDPKT_ARATH	*-*-	Calcium-dependent protein kinase 29		
Niben101Scf13505g02011.1	sp|P29828|PDI_MEDSA	*-*-	Protein disulfide-isomerase	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf02404g01010.1	sp|Q254S7|TRPD_CHLFF	--*-	Anthranilate phosphoribosyltransferase	IPR000312 (Glycosyl transferase, family 3)	GO:0008152 (metabolic process), GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf04995g03009.1	AT1G45976.1	****	S-ribonuclease binding protein 1 LENGTH=325	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017066 (S-ribonuclease binding protein, SBP1, pollen)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02513g09001.1	sp|Q8VYI9|NLTL5_ARATH	****	Non-specific lipid-transfer protein-like protein	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf01863g04002.1	sp|Q9M2Y0|PSK3_ARATH	***-	Phytosulfokines 3	IPR009438 (Phytosulfokine)	GO:0005576 (extracellular region), GO:0008083 (growth factor activity), GO:0008283 (cell proliferation)
Niben101Scf05708g00004.1	ref|XP_002534451.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF27931.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03029g01010.1	sp|Q9LI83|ALA10_ARATH	*-**	Phospholipid-transporting ATPase 10	IPR006539 (P-type ATPase, subfamily IV), IPR008250 (P-type ATPase, A  domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf05492g02006.1	sp|Q94C77|RPKL_ARATH	****	Receptor protein kinase-like protein	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf33312g00004.1			Unknown protein		
Niben101Scf00320g01005.1	sp|Q40704|MADS3_ORYSJ	****	MADS-box transcription factor 3	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf07716g00007.1	emb|CDY00663.1|	*-*-	BnaC03g36470D [Brassica napus]	IPR010605 (Protein of unknown function DUF1191)	
Niben101Ctg15729g00003.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf23843g00011.1	sp|Q00081|GLGL1_SOLTU	--*-	Glucose-1-phosphate adenylyltransferase large subunit 1		
Niben101Scf06987g01003.1	sp|A2BUE1|TRPB_PROM5	****	Tryptophan synthase beta chain	IPR023026 (Tryptophan synthase beta chain/beta chain-like)	GO:0000162 (tryptophan biosynthetic process), GO:0004834 (tryptophan synthase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf12037g01005.1	sp|Q4R6Y5|ZNRF4_MACFA	--**	Zinc/RING finger protein 4	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf03255g02010.1	sp|Q84W66|NFYB6_ARATH	****	Nuclear transcription factor Y subunit B-6	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf05804g01017.1	AT5G35200.1	***-	ENTH/ANTH/VHS superfamily protein LENGTH=544	IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain)	GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly)
Niben101Scf00793g07001.1	sp|O22714|PPR86_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02021g06008.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0009055 (electron carrier activity)
Niben101Scf02994g04022.1	sp|Q9C9A6|PUB10_ARATH	***-	U-box domain-containing protein 10	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf01208g01015.1	sp|Q7FNS3|PSBH_ATRBE	****	Photosystem II reaction center protein H	IPR001056 (Photosystem II PsbH, phosphoprotein)	GO:0009523 (photosystem II), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0042301 (phosphate ion binding), GO:0050821 (protein stabilization)
Niben101Scf00436g06006.1	sp|C3KWH4|RL9_CLOB6	***-	50S ribosomal protein L9	IPR000244 (Ribosomal protein L9)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01459g01005.1	gb|AAU90336.1|	***-	F-box protein interaction domain containing protein [Solanum demissum]		
Niben101Scf04792g02004.1	sp|Q9ZWA8|FLA9_ARATH	***-	Fasciclin-like arabinogalactan protein 9	IPR000782 (FAS1 domain)	
Niben101Scf00142g00001.1	dbj|BAD66730.1|	*-*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf22800g00004.1	ref|XP_003590086.1|	*-*-	1-aminocyclopropane-1-carboxylate oxidase-like protein [Medicago truncatula]	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf06674g00005.1	AT5G38760.1	***-	Late embryogenesis abundant protein (LEA) family protein LENGTH=67		
Niben101Scf03493g00020.1	sp|P41113|ACT3_PODCA	***-	Actin-3	IPR004000 (Actin family)	
Niben101Scf02636g04010.1			Unknown protein		
Niben101Scf16244g02026.1	sp|Q18GF3|RS19_HALWD	****	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf01842g05007.1	AT2G36290.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=364	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04623g00006.1	sp|Q4V8C4|WDR5B_RAT	*-*-	WD repeat-containing protein 5B	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00795g00011.1	sp|Q9LDY9|IOJAC_ARATH	***-	Protein Iojap, chloroplastic	IPR004394 (Protein Iojap/ribosomal silencing factor RsfS), IPR025656 (Oligomerisation domain)	
Niben101Scf05932g01001.1			Unknown protein		
Niben101Scf00294g01016.1	sp|O93277|WDR1_CHICK	*-*-	WD repeat-containing protein 1	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02195g07001.1	ref|WP_009756675.1|	*-*-	MULTISPECIES: hypothetical protein [Fischerella] gb|EHC16239.1| protein of unknown function DUF309 [Fischerella sp. JSC-11]	IPR005500 (Protein of unknown function DUF309), IPR023203 (TTHA0068-like domain)	
Niben101Scf08899g00003.1	AT5G48720.2	***-	x-ray induced transcript 1 LENGTH=300		
Niben101Scf27671g00006.1	sp|O23184|CML19_ARATH	****	Calcium-binding protein CML19	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01156g01016.1	gb|AIW09143.1|	***-	progesterone 5-beta-reductase 1 [Catharanthus roseus]	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf07008g00030.1	AT3G16060.1	****	ATP binding microtubule motor family protein LENGTH=684	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf01942g09001.1			Unknown protein		
Niben101Scf02027g00001.1	AT5G51010.1	***-	Rubredoxin-like superfamily protein LENGTH=154	IPR004039 (Rubredoxin-type fold)	GO:0005506 (iron ion binding)
Niben101Scf06912g01016.1	gb|EXU65599.1|	***-	enoyl-CoA hydratase [Streptomyces sp. PRh5]	IPR001753 (Crotonase superfamily), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf09565g01009.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03552g00005.1	emb|CDY50332.1|	***-	BnaA10g13650D [Brassica napus]	IPR012862 (Protein of unknown function DUF1635)	
Niben101Scf03154g01007.1	ref|XP_002510688.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF52875.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05371g00004.1	sp|O23090|BH014_ARATH	***-	Transcription factor bHLH14	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR025610 (Transcription factor MYC/MYB N-terminal)	GO:0046983 (protein dimerization activity)
Niben101Scf04377g07005.1	sp|Q8S9L6|CRK29_ARATH	*-**	Cysteine-rich receptor-like protein kinase 29	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02541g05004.1	sp|P09620|KEX1_YEAST	--*-	Pheromone-processing carboxypeptidase KEX1		
Niben101Scf07035g01012.1	AT1G08470.1	*-*-	strictosidine synthase-like 3 LENGTH=390	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Ctg02534g00003.1	sp|P0C542|ACT7_ORYSI	*-*-	Actin-7	IPR004000 (Actin family)	
Niben101Scf00996g01001.1	sp|Q8WVZ9|KBTB7_HUMAN	--*-	Kelch repeat and BTB domain-containing protein 7	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf02971g01008.1	sp|O64759|CAAT5_ARATH	*-**	Cationic amino acid transporter 5	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf07751g01015.1	gb|ABD33261.1|	--*-	RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula]		
Niben101Scf00854g08062.1			Unknown protein		
Niben101Scf16221g01007.1	sp|P16031|RBS_LARLA	***-	Ribulose bisphosphate carboxylase small chain, chloroplastic	IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024681 (Ribulose bisphosphate carboxylase, small chain)	
Niben101Scf01956g10009.1	AT5G03730.2	*-**	Protein kinase superfamily protein LENGTH=821	IPR011009 (Protein kinase-like domain), IPR028324 (Serine/threonine-protein kinase CTR1)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10036g03001.1	gb|KEH27107.1|	*-*-	regulator of Vps4 activity in the MVB pathway protein [Medicago truncatula]		
Niben101Scf07105g01012.1	emb|CAC79145.1|	*-*-	NADH dehydrogenase subunit 4L [Oryza sativa]		
Niben101Scf03550g00015.1	ref|XP_003631056.1|	*-*-	Glycosyltransferase, putative [Medicago truncatula]		
Niben101Scf11283g00002.1	sp|Q9SSK9|MLP28_ARATH	***-	MLP-like protein 28	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf08998g03002.1	gb|KEH22462.1|	*-*-	P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf00130g01025.1	ref|XP_003603301.1|	****	Transcription initiation factor TFIID subunit [Medicago truncatula]	IPR006594 (LisH dimerisation motif), IPR007582 (TFIID subunit, WD40-associated region), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05437g05001.1	sp|P22128|RAB8_DIPOM	*-*-	Ras-related protein Rab-8	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf01861g00002.1	sp|P93438|METK2_ORYSJ	****	S-adenosylmethionine synthase 2	IPR002133 (S-adenosylmethionine synthetase)	GO:0004478 (methionine adenosyltransferase activity), GO:0005524 (ATP binding), GO:0006556 (S-adenosylmethionine biosynthetic process)
Niben101Scf03888g01018.1	sp|O23651|TPS01_ARATH	*-**	Terpenoid synthase 1	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf01063g00004.1	AT4G27600.1	****	pfkB-like carbohydrate kinase family protein LENGTH=471	IPR002139 (Ribokinase), IPR029056 (Ribokinase-like)	GO:0004747 (ribokinase activity), GO:0006014 (D-ribose metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf02003g02007.1	ref|XP_007037136.1|	*-*-	Ankyrin repeat domain-containing protein 50 isoform 1 [Theobroma cacao] gb|EOY21637.1| Ankyrin repeat domain-containing protein 50 isoform 1 [Theobroma cacao]		
Niben101Ctg15252g00002.1	gb|AFK29424.1|	-**-	R2R3MYB transcription factor, partial [Lotus japonicus]		
Niben101Scf03766g13002.1	gb|ABI34321.1|	--*-	RNase H family protein [Solanum demissum]		
Niben101Scf01818g01006.1	sp|Q4R7V3|FR1OP_MACFA	*-*-	FGFR1 oncogene partner	IPR006594 (LisH dimerisation motif)	GO:0005515 (protein binding)
Niben101Scf01897g05014.1	sp|P81748|MIFH_TRITR	***-	Macrophage migration inhibitory factor homolog	IPR001398 (Macrophage migration inhibitory factor), IPR014347 (Tautomerase/MIF superfamily)	
Niben101Scf08627g00011.1	sp|Q95JW2|CTL5_MACFA	*-*-	Choline transporter-like protein 5	IPR007603 (Choline transporter-like)	
Niben101Scf04660g00011.1	sp|Q7ZZN9|CRVP_PROJR	***-	Cysteine-rich venom protein	IPR001283 (Cysteine-rich  secretory protein, allergen V5/Tpx-1-related)	
Niben101Scf06349g02015.1	sp|Q8KG16|RL7_CHLTE	*-*-	50S ribosomal protein L7/L12	IPR000206 (Ribosomal protein L7/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00451g00027.1	ref|YP_009091714.1|	***-	orf105 (mitochondrion) [Panax ginseng] gb|AHJ81036.1| orf105 (mitochondrion) [Panax ginseng]		
Niben101Scf01671g02003.1	AT3G62260.2	****	Protein phosphatase 2C family protein LENGTH=384	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf13821g00010.1	sp|Q9LT91|PER66_ARATH	****	Peroxidase 66	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00773g10005.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01517g07010.1	ref|WP_019475290.1|	-**-	nitrogen-fixing protein NifU [Prochlorococcus sp. W2]		
Niben101Scf02852g03013.1			Unknown protein		
Niben101Scf03035g01006.1	sp|Q9LW49|ERF4_NICSY	****	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00343g09031.1	sp|Q5REM8|TM205_PONAB	*-*-	Transmembrane protein 205	IPR008462 (CsbD-like), IPR025423 (Domain of unknown function DUF4149)	
Niben101Scf01094g03010.1	sp|Q9LNB9|LBD2_ARATH	*-*-	LOB domain-containing protein 2	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf10299g00003.1	ref|NP_001047044.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf13537g01003.1			Unknown protein		
Niben101Scf15809g00002.1	ref|NP_001289833.1|	****	sodium transporter HKT1 [Solanum lycopersicum] emb|CDI45387.1| membrane Na+ transporter [Solanum lycopersicum]	IPR003445 (Cation transporter)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf08630g00003.1	sp|O23337|PP311_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00777g01001.1	sp|O35130|NEP1_MOUSE	****	Ribosomal RNA small subunit methyltransferase NEP1	IPR005304 (Ribosomal biogenesis, methyltransferase, EMG1/NEP1), IPR029028 (Alpha/beta knot methyltransferases)	GO:0008168 (methyltransferase activity)
Niben101Scf00150g01005.1	ref|XP_007028515.1|	--*-	Plant protein 1589 of Uncharacterized protein function isoform 1 [Theobroma cacao] gb|EOY09017.1| Plant protein 1589 of Uncharacterized protein function isoform 1 [Theobroma cacao]		
Niben101Scf01317g01001.1	sp|P53471|ACT2_SCHMA	***-	Actin-2	IPR004000 (Actin family)	
Niben101Scf01376g03018.1	sp|Q5ZJF4|PRDX6_CHICK	*-**	Peroxiredoxin-6	IPR012336 (Thioredoxin-like fold)	GO:0051920 (peroxiredoxin activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03455g01006.1	sp|P27493|CB22_TOBAC	***-	Chlorophyll a-b binding protein 21, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf04114g01046.1	gb|AFI44276.1|	*-*-	NADH dehydrogenase subunit 5 (mitochondrion) [Silene vulgaris]		
Niben101Ctg13768g00001.1	ref|WP_029743406.1|	--*-	hydrolase [Enterococcus faecium]	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity)
Niben101Scf13183g00016.1	AT2G36210.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf08039g00009.1	ref|XP_003599250.1|	*-*-	MADS-box transcription factor [Medicago truncatula]	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf02172g06022.1			Unknown protein		
Niben101Scf25069g01004.1	dbj|BAB21526.1|	*-*-	mitochondrial ATP synthase 6 KD subunit [Oryza sativa Japonica Group] gb|ACU44655.1| mitochondrial ATP synthase 6 kDa subunit [Oryza sativa Indica Group]		
Niben101Scf04434g00017.1	sp|P05499|ATP6_TOBAC	*-*-	ATP synthase subunit a		
Niben101Scf01259g04002.1	sp|Q4R4P3|CYBP_MACFA	***-	Calcyclin-binding protein	IPR007699 (SGS), IPR008978 (HSP20-like chaperone), IPR015120 (Siah interacting protein, N-terminal)	
Niben101Scf00528g01011.1	gb|AGE53338.1|	--*-	PBCV-specific basic adaptor domain-containing protein, partial [Paramecium bursaria Chlorella virus Fr5L]		
Niben101Scf17988g00009.1	sp|O80919|TBL34_ARATH	***-	Protein trichome birefringence-like 34	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf01574g08012.1			Unknown protein		
Niben101Scf10476g05002.1	sp|O64792|PIGP_ARATH	***-	Phosphatidylinositol N-acetylglucosaminyltransferase subunit P	IPR016542 (Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit)	
Niben101Scf05407g00011.1	AT1G05990.1	****	EF hand calcium-binding protein family LENGTH=150	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf09372g01002.1	ref|WP_015226009.1|	****	rib PSRP-3/Ycf65 [Halothece sp. PCC 7418]	IPR006924 (Ribosomal protein PSRP-3/Ycf65)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02989g02004.1	sp|P49178|GBB_MAIZE	*-**	Guanine nucleotide-binding protein subunit beta	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01515g07011.1	sp|P62191|PRS4_HUMAN	***-	26S protease regulatory subunit 4	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf02577g03006.1			Unknown protein		
Niben101Scf03494g04004.1	AT5G06850.1	****	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein LENGTH=794	IPR000008 (C2 domain), IPR013583 (Phosphoribosyltransferase C-terminal)	GO:0005515 (protein binding)
Niben101Scf02837g07011.1	sp|Q5HQ75|ODPB_STAEQ	***-	Pyruvate dehydrogenase E1 component subunit beta	IPR005475 (Transketolase-like, pyrimidine-binding domain), IPR005476 (Transketolase, C-terminal), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf06793g05004.1	AT4G32410.1	*-*-	cellulose synthase 1 LENGTH=1081	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf03340g07004.1	ref|XP_002533796.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF28583.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03824g02002.1	sp|Q3IMY4|RS19_NATPD	****	30S ribosomal protein S19	IPR002222 (Ribosomal protein S19/S15), IPR023575 (Ribosomal protein S19, superfamily)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf02840g01012.1	AT5G15270.2	****	RNA-binding KH domain-containing protein LENGTH=548	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf04940g00001.1	emb|CDY06368.1|	*-*-	BnaA09g48350D [Brassica napus]	IPR004314 (Domain of unknown function DUF239)	
Niben101Scf01227g03016.1	AT2G39970.1	*-*-	Mitochondrial substrate carrier family protein LENGTH=331	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf00749g06005.1	sp|Q7NBW0|DNAJ_MYCGA	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf04100g00005.1	sp|Q7WKG2|AQPZ_BORBR	***-	Aquaporin Z	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00876g02017.1	sp|Q9M363|B561I_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR006593 (Cytochrome b561/ferric reductase transmembrane)	GO:0016021 (integral component of membrane)
Niben101Scf01721g04001.1	sp|Q9SKB3|PARG1_ARATH	****	Poly(ADP-ribose) glycohydrolase 1	IPR007724 (Poly(ADP-ribose) glycohydrolase)	GO:0004649 (poly(ADP-ribose) glycohydrolase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf10560g00001.1	sp|Q9SDG8|AGO4A_ORYSJ	*-*-	Protein argonaute 4A	IPR003165 (Stem cell self-renewal protein Piwi)	GO:0005515 (protein binding)
Niben101Scf00687g07001.1	AT3G62360.1	****	Carbohydrate-binding-like fold LENGTH=1227	IPR008969 (Carboxypeptidase-like, regulatory domain), IPR008970 (Collagen-binding surface protein Cna, B-type domain), IPR013783 (Immunoglobulin-like fold), IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0030246 (carbohydrate binding)
Niben101Scf01787g00042.1	sp|Q2SZN2|NUOD_BURTA	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09456g00020.1	AT2G35660.1	*-**	FAD/NAD(P)-binding oxidoreductase family protein LENGTH=439	IPR008671 (Lycopene cyclase-type, FAD-binding)	GO:0016117 (carotenoid biosynthetic process), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen)
Niben101Scf09169g01016.1	sp|Q9LVL4|OFP3_ARATH	*-*-	Transcription repressor OFP3	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf01090g03016.1			Unknown protein		
Niben101Scf09100g03001.1	sp|Q9FKH1|SAP_ARATH	***-	Transcriptional regulator STERILE APETALA		
Niben101Scf03647g02012.1	emb|CDX72015.1|	--*-	BnaC08g28590D [Brassica napus]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf04400g01014.1	sp|B5RBF3|YMDB_SALG2	*-*-	O-acetyl-ADP-ribose deacetylase	IPR001251 (CRAL-TRIO domain), IPR002589 (Macro domain)	
Niben101Scf01167g05012.1			Unknown protein		
Niben101Scf04994g00017.1			Unknown protein		
Niben101Scf00231g03007.1	ref|NP_001046922.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf00063g13003.1	AT1G18790.1	*-*-	RWP-RK domain-containing protein LENGTH=269	IPR003035 (RWP-RK domain)	
Niben101Scf10575g01004.1	sp|Q46127|SYW_CLOLO	****	Tryptophan--tRNA ligase	IPR002305 (Aminoacyl-tRNA synthetase, class Ic)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004831 (tyrosine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation)
Niben101Scf10235g02001.1	sp|Q39266|ZFP7_ARATH	--*-	Zinc finger protein 7	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf28115g01014.1	ref|XP_007026965.1|	***-	Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 3 [Theobroma cacao] gb|EOY07467.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 3 [Theobroma cacao]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05132g03008.1			Unknown protein		
Niben101Scf01506g00003.1	sp|Q91ZQ0|VMP1_RAT	***-	Vacuole membrane protein 1		
Niben101Scf02658g05008.1	AT5G18010.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=90	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf04995g07011.1	AT1G45207.2	*-*-	Remorin family protein LENGTH=555		
Niben101Scf09513g00030.1	sp|Q9LVQ0|PME31_ARATH	****	Pectinesterase 31	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01918g02007.1	sp|P42124|EZ_DROME	--**	Histone-lysine N-methyltransferase E(z)	IPR001214 (SET domain), IPR003105 (SRA-YDG), IPR007728 (Pre-SET domain), IPR015947 (PUA-like domain), IPR025794 (Histone H3-K9 methyltransferase, plant)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding), GO:0016571 (histone methylation), GO:0018024 (histone-lysine N-methyltransferase activity), GO:0034968 (histone lysine methylation), GO:0042393 (histone binding)
Niben101Scf02422g00005.1	AT1G64030.1	***-	serpin 3 LENGTH=385	IPR000215 (Serpin family), IPR023795 (Serpin, conserved site), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf06171g00004.1	sp|Q9FJZ3|MAN7_ARATH	***-	Mannan endo-1,4-beta-mannosidase 7	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03779g05009.1	sp|Q9ZT48|ATE1_ARATH	*-**	Arginyl-tRNA--protein transferase 1	IPR017137 (Arginine-tRNA-protein transferase 1, eukaryotic)	GO:0004057 (arginyltransferase activity), GO:0016598 (protein arginylation)
Niben101Scf02510g05024.1	AT2G27480.1	****	Calcium-binding EF-hand family protein LENGTH=228	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf07549g02001.1	AT1G49720.2	*-**	abscisic acid responsive element-binding factor 1 LENGTH=403	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf17855g00007.1	AT5G17190.1	****	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf07649g00001.1	gb|KEH34055.1|	*-*-	disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf04652g00006.1	sp|Q12873|CHD3_HUMAN	--*-	Chromodomain-helicase-DNA-binding protein 3		
Niben101Scf00398g07019.1	sp|G3X9R7|RN148_MOUSE	*-*-	RING finger protein 148	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05816g02007.1			Unknown protein		
Niben101Scf09705g00002.1	AT4G34980.1	*-**	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf08995g00012.1	AT2G41690.1	****	heat shock transcription factor B3 LENGTH=244	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf11325g00008.1	sp|Q9SRW7|APK3_ARATH	*-**	Adenylyl-sulfate kinase 3	IPR002891 (Adenylylsulphate kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000103 (sulfate assimilation), GO:0004020 (adenylylsulfate kinase activity), GO:0005524 (ATP binding)
Niben101Scf04053g03001.1	sp|Q9ZQR4|Y2452_ARATH	***-	DUF21 domain-containing protein	IPR000644 (CBS domain), IPR002550 (Domain of unknown function DUF21)	
Niben101Scf17815g00007.1	sp|Q8RU27|UPTG2_SOLTU	***-	Alpha-1,4-glucan-protein synthase [UDP-forming] 2	IPR004901 (Reversibly glycosylated polypeptide family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016866 (intramolecular transferase activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf07103g01025.1	gb|AGW98259.1|	***-	NADH-plastoquinone oxidoreductase subunit 6 (chloroplast) [Ipomoea tricolor]		
Niben101Scf02319g10005.1	AT1G48910.1	****	Flavin-containing monooxygenase family protein LENGTH=383	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02480g01001.1	sp|O82643|ZIP9_ARATH	****	Zinc transporter 9	IPR003689 (Zinc/iron permease)	GO:0005385 (zinc ion transmembrane transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport), GO:0071577 (zinc ion transmembrane transport)
Niben101Scf01209g00015.1	sp|Q5ZHZ4|HAKAI_CHICK	*-*-	E3 ubiquitin-protein ligase Hakai	IPR007087 (Zinc finger, C2H2), IPR017907 (Zinc finger, RING-type, conserved site)	GO:0046872 (metal ion binding)
Niben101Scf11823g00019.1	sp|Q8L850|PI5K9_ARATH	****	Phosphatidylinositol 4-phosphate 5-kinase 9	IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase), IPR027483 (Phosphatidylinositol-4-phosphate 5-kinase, C-terminal), IPR027484 (Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain)	GO:0005524 (ATP binding), GO:0016307 (phosphatidylinositol phosphate kinase activity), GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity), GO:0046488 (phosphatidylinositol metabolic process)
Niben101Scf00496g00021.1	sp|Q9M907|PP217_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00152g21007.1	AT1G75590.1	***-	SAUR-like auxin-responsive protein family LENGTH=154	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03962g02003.1	sp|F4KIB2|TMN8_ARATH	***-	Transmembrane 9 superfamily member 8	IPR004240 (Nonaspanin (TM9SF)), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane)
Niben101Scf04764g10047.1	emb|CDY51666.1|	*-*-	BnaC03g67050D [Brassica napus]		
Niben101Scf03977g01006.1	sp|P12040|PUR3_BACSU	--*-	Phosphoribosylglycinamide formyltransferase	IPR002376 (Formyl transferase, N-terminal)	GO:0008168 (methyltransferase activity), GO:0009058 (biosynthetic process), GO:0016742 (hydroxymethyl-, formyl- and related transferase activity)
Niben101Scf07027g04018.1	sp|P70587|LRRC7_RAT	*-*-	Leucine-rich repeat-containing protein 7	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf11475g00003.1	sp|Q9SIL5|PP165_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Ctg14602g00003.1	gb|AES59707.2|	--*-	DUF4283 domain protein [Medicago truncatula]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf23930g00003.1	ref|XP_002521949.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF40353.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09078g00010.1	sp|Q9FFI5|NAC86_ARATH	*-*-	NAC domain-containing protein 86	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04624g00003.1	sp|B0JYZ2|PEX16_XENTR	***-	Peroxisomal membrane protein PEX16	IPR013919 (Peroxisome membrane protein, Pex16)	
Niben101Scf02158g00009.1	sp|Q7ZVX5|REEP3_DANRE	*-*-	Receptor expression-enhancing protein 3	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf04802g01014.1	sp|Q5SU73|COIL_MOUSE	*-*-	Coilin		
Niben101Scf18815g00005.1	sp|A6UTL8|HIS8_META3	****	Histidinol-phosphate aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf16733g01044.1	AT1G26300.1	***-	BSD domain-containing protein LENGTH=316	IPR005607 (BSD)	
Niben101Scf02124g01031.1	sp|Q9LQ16|PPR94_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00146g00008.1	sp|Q9LFR3|GASAE_ARATH	*-*-	Gibberellin-regulated protein 14	IPR003854 (Gibberellin regulated protein)	
Niben101Scf08008g00006.1	sp|P20238|MT1_ERYGU	***-	Metallothionein-like protein 1	IPR000347 (Metallothionein, family 15, plant)	GO:0046872 (metal ion binding)
Niben101Scf00454g05003.1	sp|Q7XJE6|MCA1_ARATH	***-	Metacaspase-1	IPR005735 (Zinc finger, LSD1-type), IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf32477g00002.1			Unknown protein		
Niben101Scf05307g01008.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01032g02001.1	sp|P46976|GLYG_HUMAN	*-*-	Glycogenin-1	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf05916g02015.1	emb|CDY04465.1|	***-	BnaA07g12910D [Brassica napus]		
Niben101Scf07608g02005.1	ref|WP_025893906.1|	****	MULTISPECIES: 1,4-dihydroxy-2-naphthoate prenyltransferase [Prochlorococcus]	IPR000537 (UbiA prenyltransferase family)	GO:0004659 (prenyltransferase activity), GO:0016021 (integral component of membrane)
Niben101Scf00472g03021.1	sp|Q5PPX5|RN170_XENLA	*-*-	E3 ubiquitin-protein ligase RNF170	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0046872 (metal ion binding)
Niben101Scf07590g01008.1	ref|YP_009091709.1|	***-	orf109 (mitochondrion) [Panax ginseng] gb|AHJ81034.1| orf109 (mitochondrion) [Panax ginseng]		
Niben101Scf02947g03003.1	sp|Q9LSF7|Y3518_ARATH	*-*-	B3 domain-containing protein	IPR005508 (B3 domain-containing protein), IPR015300 (DNA-binding pseudobarrel domain)	
Niben101Scf01592g00006.1	sp|Q9SXZ2|FT_ARATH	***-	Protein FLOWERING LOCUS T	IPR008914 (Phosphatidylethanolamine-binding protein PEBP)	
Niben101Scf01866g01014.1			Unknown protein		
Niben101Scf15536g03003.1	sp|Q9SF78|GDL29_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf07304g01003.1	sp|Q9M088|E135_ARATH	***-	Glucan endo-1,3-beta-glucosidase 5	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00246g06012.1	sp|Q8JPR2|L_BUNL8	--*-	RNA-directed RNA polymerase L		
Niben101Scf03895g00015.1	AT1G20830.1	***-	multiple chloroplast division site 1 LENGTH=349		
Niben101Scf02210g03006.1			Unknown protein		
Niben101Scf05931g01002.1	ref|XP_003614194.1|	****	Salicylic acid methyl transferase-like protein [Medicago truncatula] gb|AES97152.1| salicylic acid carboxyl methyltransferase [Medicago truncatula]	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf13103g01029.1	AT4G38970.1	****	fructose-bisphosphate aldolase 2 LENGTH=398	IPR000741 (Fructose-bisphosphate aldolase, class-I), IPR013785 (Aldolase-type TIM barrel), IPR029768 (Fructose-bisphosphate aldolase class-I active site)	GO:0003824 (catalytic activity), GO:0004332 (fructose-bisphosphate aldolase activity), GO:0006096 (glycolytic process)
Niben101Scf02303g00022.1	AT2G39380.1	****	exocyst subunit exo70 family protein H2 LENGTH=637	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf12885g00006.1			Unknown protein		
Niben101Scf01486g04010.1	sp|Q28G05|SYF2_XENTR	***-	Pre-mRNA-splicing factor syf2	IPR013260 (mRNA splicing factor SYF2)	
Niben101Scf04406g07007.1	ref|WP_033791015.1|	--*-	translocation protein TolB [Helicobacter pylori]		
Niben101Scf02989g01030.1	ref|WP_024663959.1|	****	HAD family hydrolase [Pseudomonas syringae]	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain), IPR023468 (Riboflavin kinase)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf00508g09014.1	AT1G75670.1	***-	DNA-directed RNA polymerases LENGTH=196		
Niben101Scf00128g00003.1	emb|CDX86439.1|	***-	BnaA06g31560D [Brassica napus]		
Niben101Scf01717g05005.1	sp|Q1DQ20|IF4A_COCIM	*-*-	ATP-dependent RNA helicase eIF4A	IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02026g01002.1	ref|NP_001235187.1|	***-	late elongated hypocotyl and circadian clock associated-1-like protein 1 [Glycine max] gb|ABW87008.1| late elongated hypocotyl and circadian clock associated-1-like protein 1 [Glycine max]		
Niben101Scf28503g00002.1	ref|WP_008314969.1|	***-	Protein of unknown function (DUF561) [Leptolyngbya sp. PCC 6406]	IPR007570 (Uncharacterised protein family Ycf23), IPR011005 (Dihydropteroate synthase-like), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0044237 (cellular metabolic process)
Niben101Scf05422g00021.1	sp|Q9S7H4|CM2_ARATH	****	Chorismate mutase 2	IPR008238 (Chorismate mutase, AroQ class, eukaryotic type)	GO:0004106 (chorismate mutase activity), GO:0009073 (aromatic amino acid family biosynthetic process), GO:0046417 (chorismate metabolic process)
Niben101Scf09242g02015.1	AT3G03140.1	*-*-	Tudor/PWWP/MBT superfamily protein LENGTH=769	IPR000313 (PWWP domain)	
Niben101Scf00723g00012.1	sp|Q8RWI9|AB15G_ARATH	*-*-	ABC transporter G family member 15	IPR013525 (ABC-2 type transporter)	GO:0016020 (membrane)
Niben101Ctg06797g00003.1	AT1G27750.1	*-*-	nucleic acid binding LENGTH=1075		
Niben101Scf06625g01003.1	AT4G27720.1	***-	Major facilitator superfamily protein LENGTH=460	IPR008509 (Molybdate-anion transporter MOT2), IPR020846 (Major facilitator superfamily domain)	GO:0015098 (molybdate ion transmembrane transporter activity), GO:0015689 (molybdate ion transport), GO:0016021 (integral component of membrane)
Niben101Scf07311g00005.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf09596g00006.1	AT3G53680.1	*-*-	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain LENGTH=841		
Niben101Scf00051g00010.1	sp|P50165|TRNH_DATST	*-*-	Tropinone reductase homolog	IPR002347 (Glucose/ribitol dehydrogenase)	
Niben101Scf04664g01012.1	ref|XP_002512992.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF49495.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04594g02001.1	AT1G80160.1	***-	Lactoylglutathione lyase / glyoxalase I family protein LENGTH=167	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf01683g09002.1	AT4G39390.1	***-	nucleotide sugar transporter-KT 1 LENGTH=337	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf02665g15016.1			Unknown protein		
Niben101Scf04908g00016.1	sp|Q84MB3|ACCH1_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase homolog 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf04699g01013.1	sp|Q9LT79|PUB25_ARATH	***-	U-box domain-containing protein 25	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0016567 (protein ubiquitination)
Niben101Scf01818g00014.1	sp|O04893|AGLU_SPIOL	***-	Alpha-glucosidase	IPR000322 (Glycoside hydrolase family 31)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf10065g01013.1	sp|Q14149|MORC3_HUMAN	*-**	MORC family CW-type zinc finger protein 3	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR011124 (Zinc finger, CW-type)	GO:0008270 (zinc ion binding)
Niben101Scf01571g00005.1	sp|Q9FUR2|IP5P2_ARATH	--*-	Type I inositol 1,4,5-trisphosphate 5-phosphatase 2	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf00470g04003.1	sp|Q91W82|UB2E2_MOUSE	***-	Ubiquitin-conjugating enzyme E2 E2	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf00422g01021.1	sp|P48981|BGAL_MALDO	***-	Beta-galactosidase	IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf17830g00002.1	emb|CDY07461.1|	*-*-	BnaA07g25400D [Brassica napus]		
Niben101Scf03626g01007.1	sp|Q9SRU2|BIG_ARATH	--*-	Auxin transport protein BIG		
Niben101Scf01209g00014.1	sp|Q9XI74|PUMP3_ARATH	****	Mitochondrial uncoupling protein 3	IPR002030 (Mitochondrial brown fat uncoupling protein), IPR023395 (Mitochondrial carrier domain)	GO:0006839 (mitochondrial transport), GO:0031966 (mitochondrial membrane)
Niben101Scf01497g02003.1	AT2G17200.1	***-	ubiquitin family protein LENGTH=551	IPR009060 (UBA-like), IPR015496 (Ubiquilin), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf00215g11013.1	sp|B6YV16|VATD_THEON	****	V-type ATP synthase subunit D	IPR002699 (ATPase, V1 complex, subunit D)	GO:0042626 (ATPase activity, coupled to transmembrane movement of substances)
Niben101Scf05135g05010.1	sp|P52478|UBC1_CAEEL	***-	Ubiquitin-conjugating enzyme E2 1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site), IPR027230 (SUMO-conjugating enzyme Ubc9)	GO:0019789 (SUMO transferase activity)
Niben101Scf00585g04010.1	sp|A2YH60|CCB22_ORYSI	****	Cyclin-B2-2	IPR014400 (Cyclin A/B/D/E/F/O)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0019901 (protein kinase binding), GO:0051726 (regulation of cell cycle)
Niben101Scf00914g04006.1	sp|Q9R7D7|GAL1_LACLA	****	Galactokinase	IPR006206 (Mevalonate/galactokinase)	GO:0004335 (galactokinase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006012 (galactose metabolic process), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0016773 (phosphotransferase activity, alcohol group as acceptor), GO:0046835 (carbohydrate phosphorylation)
Niben101Scf00080g02004.1	sp|Q0WPE9|NAT7_ARATH	****	Nucleobase-ascorbate transporter 7	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf10322g01015.1	sp|A2YAZ1|CASP3_ORYSI	***-	Casparian strip membrane protein 3	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf09253g00008.1	sp|Q9LI83|ALA10_ARATH	*-**	Phospholipid-transporting ATPase 10	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf07649g00002.1	gb|KEH21915.1|	*-*-	disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf06154g01006.1	sp|P44931|TADA_HAEIN	*-*-	tRNA-specific adenosine deaminase	IPR016193 (Cytidine deaminase-like)	GO:0003824 (catalytic activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity)
Niben101Scf04114g00038.1	sp|B8E1F7|RS13_DICTD	***-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH), IPR027437 (30s ribosomal protein S13, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00883g16014.1	sp|Q9ZNT3|ADF5_ARATH	****	Actin-depolymerizing factor 5	IPR017904 (ADF/Cofilin/Destrin), IPR029006 (ADF-H/Gelsolin-like domain)	GO:0003779 (actin binding), GO:0005622 (intracellular), GO:0015629 (actin cytoskeleton), GO:0030042 (actin filament depolymerization)
Niben101Scf14122g00014.1	sp|Q0IIB1|PHYD1_BOVIN	***-	Phytanoyl-CoA dioxygenase domain-containing protein 1	IPR008775 (Phytanoyl-CoA dioxygenase)	
Niben101Scf15515g01003.1	sp|A7NY33|PER4_VITVI	****	Peroxidase 4	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07123g00020.1	AT2G41090.1	****	Calcium-binding EF-hand family protein LENGTH=191	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf06488g00007.1	sp|Q9NP79|VTA1_HUMAN	*-*-	Vacuolar protein sorting-associated protein VTA1 homolog	IPR023175 (Vacuolar protein sorting-associate protein Vta1/Callose synthase, N-terminal domain)	
Niben101Scf07869g00003.1	sp|B1XHZ3|ATP61_SYNP2	****	ATP synthase subunit a 1	IPR000568 (ATPase, F0 complex, subunit A)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf01035g05014.1	ref|YP_002608396.1|	***-	orf86 [Vitis vinifera] emb|CAQ77655.1| orf86 [Vitis vinifera] gb|ACS15212.1| ORF86 [Vitis vinifera]		
Niben101Scf00744g02013.1	AT5G65520.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=206	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01227g01004.1	sp|O04197|COI1_ARATH	***-	Coronatine-insensitive protein 1		
Niben101Scf02455g00014.1	sp|Q8FLY8|GLPK_COREF	****	Glycerol kinase	IPR005999 (Glycerol kinase)	GO:0004370 (glycerol kinase activity), GO:0005975 (carbohydrate metabolic process), GO:0006072 (glycerol-3-phosphate metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf03854g03017.1			Unknown protein		
Niben101Scf05948g02006.1	emb|CDX90212.1|	*-*-	BnaA08g17720D [Brassica napus]		
Niben101Scf02929g01004.1	ref|WP_015007344.1|	*-**	heme lyase subunit CcmF [Sinorhizobium meliloti] ref|YP_006839548.1| cytochrome C-type biogenesis transmembrane protein [Sinorhizobium meliloti Rm41] emb|CAA57906.1| cycK [Sinorhizobium meliloti] emb|CCM66722.1| cytochrome C-type biogenesis transmembrane protein [Sinorhizobium meliloti Rm41]	IPR002541 (Cytochrome c assembly protein), IPR003567 (Cytochrome c-type biogenesis protein)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly), GO:0020037 (heme binding)
Niben101Scf12160g01002.1	AT1G31490.1	****	HXXXD-type acyl-transferase family protein LENGTH=444	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04617g00001.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02798g01048.1	sp|P15688|NU2M_BETVU	*-*-	NADH-ubiquinone oxidoreductase chain 2		
Niben101Scf00854g05084.1	sp|Q4URD2|RPOB_XANC8	--*-	DNA-directed RNA polymerase subunit beta		
Niben101Scf06972g00001.1	sp|A8FY39|RRF_SHESH	--*-	Ribosome-recycling factor	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf05329g06007.1	sp|Q9LYL9|Y3623_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf02814g01011.1	emb|CDY00899.1|	***-	BnaC05g43010D [Brassica napus]		
Niben101Scf02428g01029.1	sp|A2X1A1|ARFF_ORYSI	****	Auxin response factor 6	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf02709g03028.1	sp|Q32L65|MARH2_BOVIN	--*-	E3 ubiquitin-protein ligase MARCH2	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf00586g03001.1	gb|ABI17899.1|	-***	invertase inhibitor [Coffea canephora] emb|CDP15271.1| unnamed protein product [Coffea canephora]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00439g04012.1	sp|F4K5L5|TBL16_ARATH	*-*-	Protein trichome birefringence-like 16	IPR026057 (PC-Esterase)	
Niben101Scf05346g09007.1	sp|Q13724|MOGS_HUMAN	*-**	Mannosyl-oligosaccharide glucosidase	IPR004888 (Glycoside hydrolase, family 63)	GO:0004573 (mannosyl-oligosaccharide glucosidase activity), GO:0009311 (oligosaccharide metabolic process)
Niben101Scf05822g03001.1	ref|XP_007033568.1|	***-	Mitochondrial Rho GTPase 2 isoform 1 [Theobroma cacao] gb|EOY04494.1| Mitochondrial Rho GTPase 2 isoform 1 [Theobroma cacao]		
Niben101Scf01912g00005.1	sp|Q9LZA6|SDP1_ARATH	*-*-	Triacylglycerol lipase SDP1		
Niben101Scf09505g00004.1	ref|XP_007042659.1|	*-*-	My , putative isoform 2 [Theobroma cacao]		
Niben101Scf01485g02004.1	sp|Q07878|VPS13_YEAST	*-*-	Vacuolar protein sorting-associated protein 13	IPR009291 (Vacuolar protein sorting-associated protein 62), IPR009543 (Vacuolar protein sorting-associated protein 13 domain), IPR010482 (Peroxin/Dysferlin domain), IPR026847 (Vacuolar protein sorting-associated protein 13)	
Niben101Scf03779g08020.1	AT1G22400.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf15067g01008.1	AT3G61160.2	*-*-	Protein kinase superfamily protein LENGTH=438	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf14118g00010.1	sp|B7UKW1|SYQ_ECO27	****	Glutamine--tRNA ligase	IPR000924 (Glutamyl/glutaminyl-tRNA synthetase), IPR007638 (Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2), IPR007639 (Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004819 (glutamine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006412 (translation), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006425 (glutaminyl-tRNA aminoacylation), GO:0016876 (ligase activity, forming aminoacyl-tRNA and related compounds), GO:0043039 (tRNA aminoacylation)
Niben101Scf04905g00032.1	sp|Q0WVW7|RQL5_ARATH	*-**	ATP-dependent DNA helicase Q-like 5	IPR011545 (DEAD/DEAH box helicase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01966g02002.1	sp|Q9FGL9|PTBP2_ARATH	****	Polypyrimidine tract-binding protein homolog 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03824g02001.1	sp|P08283|H1_PEA	*-*-	Histone H1	IPR005819 (Histone H5)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006334 (nucleosome assembly)
Niben101Scf20000g00009.1			Unknown protein		
Niben101Scf05307g03012.1	sp|P45857|ACDB_BACSU	****	Acyl-CoA dehydrogenase	IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain), IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal)	GO:0003995 (acyl-CoA dehydrogenase activity), GO:0008152 (metabolic process), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg13813g00003.1	sp|P92996|GL120_ARATH	***-	Germin-like protein subfamily 1 member 20	IPR014710 (RmlC-like jelly roll fold)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf00621g11012.1	ref|XP_002524800.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF37643.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf03425g03017.1	sp|Q9W4D2|RNP4F_DROME	--**	RNA-binding protein 4F	IPR008111 (RNA-binding motif protein 8), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006396 (RNA processing)
Niben101Scf02665g14012.1	emb|CDY63845.1|	*-*-	BnaCnng42740D [Brassica napus]		
Niben101Scf07766g00007.1	ref|XP_002518781.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF43706.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf06596g03019.1	gb|ABD32321.2|	-**-	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf08447g01002.1	AT3G55520.1	***-	FKBP-like peptidyl-prolyl cis-trans isomerase family protein LENGTH=190	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf24238g00012.1	sp|Q9FFD5|RIC4_ARATH	***-	CRIB domain-containing protein RIC4	IPR000095 (CRIB domain)	
Niben101Scf23427g00005.1	ref|WP_009873431.1|	****	amino acid transporter [Chlamydia trachomatis] ref|YP_001654280.1| tyr [Chlamydia trachomatis RC-L2/55]	IPR018227 (Tryptophan/tyrosine permease)	GO:0003333 (amino acid transmembrane transport)
Niben101Scf01182g01006.1	sp|Q9XEG7|RS3A_TORRU	***-	40S ribosomal protein S3a	IPR001593 (Ribosomal protein S3Ae)	
Niben101Scf01695g06009.1	AT4G02930.1	*-**	GTP binding Elongation factor Tu family protein LENGTH=454	IPR000795 (Elongation factor, GTP-binding domain), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf04901g00023.1	sp|F4K5L5|TBL16_ARATH	***-	Protein trichome birefringence-like 16	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf13050g00002.1			Unknown protein		
Niben101Scf01933g00003.1	sp|Q564G7|GMGT1_CYATE	***-	Galactomannan galactosyltransferase 1	IPR008630 (Galactosyl transferase)	GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03816g01001.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10329g01015.1	sp|Q99797|MIPEP_HUMAN	****	Mitochondrial intermediate peptidase	IPR001567 (Peptidase M3A/M3B), IPR024077 (Neurolysin/Thimet oligopeptidase, domain 2), IPR024079 (Metallopeptidase, catalytic domain)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0008237 (metallopeptidase activity)
Niben101Scf07965g03006.1	sp|C6DHF5|RHLB_PECCP	*-**	ATP-dependent RNA helicase RhlB	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf06736g03007.1	gb|AAF18624.1|	*-*-	En/Spm-like transposon protein [Arabidopsis thaliana]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf01240g07003.1	AT2G17975.1	****	zinc finger (Ran-binding) family protein LENGTH=268	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf09209g01013.1	emb|CDX69870.1|	***-	BnaA10g22190D [Brassica napus]		
Niben101Scf01677g06012.1	sp|Q96292|ACT2_ARATH	***-	Actin-2	IPR004000 (Actin family)	
Niben101Scf00383g04011.1	AT1G10210.1	****	mitogen-activated protein kinase 1 LENGTH=370	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02927g04002.1	sp|P10639|THIO_MOUSE	***-	Thioredoxin	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03448g00013.1	AT2G03430.1	*-*-	Ankyrin repeat family protein LENGTH=240	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03937g00006.1			Unknown protein		
Niben101Scf01563g03002.1	AT1G05940.1	****	cationic amino acid transporter 9 LENGTH=569	IPR002293 (Amino acid/polyamine transporter I)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf04140g01007.1			Unknown protein		
Niben101Scf01671g02004.1	sp|Q8L7F9|B3GTF_ARATH	****	Beta-1,3-galactosyltransferase 15	IPR002659 (Glycosyl transferase, family 31), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane), GO:0030246 (carbohydrate binding)
Niben101Scf00885g11001.1	ref|XP_002535856.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03373g03001.1	gb|KEH35304.1|	-**-	C2 domain protein [Medicago truncatula]		
Niben101Scf00033g07013.1	gb|KEH21973.1|	--*-	WRKY transcription factor-like protein [Medicago truncatula]		
Niben101Scf08755g04016.1	AT4G20130.1	*-*-	plastid transcriptionally active 14 LENGTH=483	IPR015353 (Rubisco LSMT, substrate-binding domain)	
Niben101Scf00713g01011.1	sp|Q6DDL7|UN93A_XENLA	***-	Protein unc-93 homolog A	IPR010291 (Ion channel regulatory protein, UNC-93), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf05029g02015.1	AT1G21550.1	****	Calcium-binding EF-hand family protein LENGTH=155	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03360g00004.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf04673g02002.1	AT4G03430.1	*-*-	pre-mRNA splicing factor-related LENGTH=1029	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0006396 (RNA processing)
Niben101Scf10863g00002.1	sp|O22446|HDA19_ARATH	****	Histone deacetylase 19	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	GO:0004407 (histone deacetylase activity), GO:0016575 (histone deacetylation)
Niben101Scf04783g08009.1	ref|XP_007034599.1|	***-	Alpha/beta-Hydrolases superfamily protein isoform 4 [Theobroma cacao] gb|EOY05525.1| Alpha/beta-Hydrolases superfamily protein isoform 4 [Theobroma cacao]	IPR013744 (Protein of unknown function DUF1749), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05431g01012.1	AT1G10150.1	***-	Carbohydrate-binding protein LENGTH=414		
Niben101Scf02537g04005.1	sp|Q9FE06|EXOL2_ARATH	***-	Protein EXORDIUM-like 2	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf01964g07003.1	sp|O34392|YTRE_BACSU	****	ABC transporter ATP-binding protein YtrE	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf10970g00025.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03271g02025.1	AT1G55915.1	****	zinc ion binding LENGTH=404	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf15604g00020.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08936g08024.1	sp|Q71XG3|FABH_LISMF	****	3-oxoacyl-[acyl-carrier-protein] synthase 3	IPR004655 (3-oxoacyl-[acyl-carrier-protein] synthase 3)	GO:0003824 (catalytic activity), GO:0004315 (3-oxoacyl-[acyl-carrier-protein] synthase activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf10608g03005.1	ref|XP_002304914.1|	--**	invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa] gb|EEE85425.1| invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf00712g10023.1	sp|Q9SFX2|PUB43_ARATH	***-	U-box domain-containing protein 43	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf04123g01015.1	AT2G38580.1	***-	Mitochondrial ATP synthase D chain-related protein LENGTH=482		
Niben101Scf02044g13020.1	AT5G45030.1	***-	Trypsin family protein LENGTH=607	IPR012985 (Peptidase S64, Ssy5)	GO:0003824 (catalytic activity)
Niben101Scf00927g02018.1	AT1G68040.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=363	IPR005299 (SAM dependent carboxyl methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf00163g22002.1	sp|Q9LW48|ERF5_NICSY	****	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00800g02008.1	AT5G19450.1	*-**	calcium-dependent protein kinase 19 LENGTH=533	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf06361g07023.1	AT2G22125.1	*-**	binding LENGTH=2150	IPR000008 (C2 domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf07687g01005.1	emb|CDY17170.1|	*-*-	BnaA05g10180D [Brassica napus]		
Niben101Scf15666g00008.1	sp|Q94JX9|NACA2_ARATH	***-	Nascent polypeptide-associated complex subunit alpha-like protein 2	IPR016641 (Nascent polypeptide-associated complex subunit alpha)	GO:0005515 (protein binding)
Niben101Scf02693g02014.1	sp|B8BMI1|MCM7_ORYSI	****	DNA replication licensing factor MCM7	IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027925 (MCM N-terminal domain)	GO:0003677 (DNA binding), GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006260 (DNA replication), GO:0006270 (DNA replication initiation), GO:0042555 (MCM complex)
Niben101Scf04422g17008.1	AT3G21140.1	***-	Pyridoxamine 5'-phosphate oxidase family protein LENGTH=387	IPR014599 (Haem iron utilisation protein, pyridoxamine 5'-phosphate domain-type)	GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00270g06005.1	AT1G05840.1	***-	Eukaryotic aspartyl protease family protein LENGTH=485	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf16986g00011.1	sp|P53494|ACT4_ARATH	*-*-	Actin-4	IPR004000 (Actin family)	
Niben101Scf01724g00005.1	gb|AAP53948.1|	--*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]		
Niben101Scf00684g02016.1	sp|Q62203|SF3A2_MOUSE	*-*-	Splicing factor 3A subunit 2		
Niben101Scf15653g02011.1	ref|WP_026032281.1|	***-	branched-chain alpha-keto acid dehydrogenase subunit E2 [Prochlorococcus sp. W4]	IPR000089 (Biotin/lipoyl attachment), IPR001078 (2-oxoacid dehydrogenase acyltransferase, catalytic domain), IPR004167 (E3-binding domain), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf15903g00012.1	sp|Q9LJQ5|RTNLI_ARATH	***-	Reticulon-like protein B9	IPR003388 (Reticulon)	
Niben101Scf01905g01020.1			Unknown protein		
Niben101Scf08899g00004.1	sp|Q09020|PR4_PHAVU	***-	Wound-induced basic protein	IPR012643 (Wound-inducible basic)	
Niben101Scf02669g03006.1	sp|Q2MIH6|YCF4_SOLBU	*-**	Photosystem I assembly protein Ycf4	IPR003359 (Photosystem I Ycf4, assembly), IPR007484 (Peptidase M28)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf05035g00003.1	AT2G19170.1	****	subtilisin-like serine protease 3 LENGTH=815	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06795g02002.1			Unknown protein		
Niben101Scf17473g00003.1	sp|P13284|GILT_HUMAN	***-	Gamma-interferon-inducible lysosomal thiol reductase	IPR004911 (Gamma interferon inducible lysosomal thiol reductase GILT)	
Niben101Scf03308g00004.1	sp|Q6TPK4|CYT1_ACTDE	****	Cysteine proteinase inhibitor 1	IPR000010 (Proteinase inhibitor I25, cystatin), IPR027214 (Cystatin)	GO:0004869 (cysteine-type endopeptidase inhibitor activity)
Niben101Scf02568g02007.1	sp|Q9ULW5|RAB26_HUMAN	*-*-	Ras-related protein Rab-26	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf02656g04001.1	ref|NP_001275464.1|	*-*-	rib [Solanum tuberosum]		
Niben101Scf04060g02018.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02147g01009.1	AT3G05960.1	****	sugar transporter 6 LENGTH=507	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf05226g00004.1	gb|ABA94403.2|	--*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf05664g03020.1	AT5G25270.1	*-*-	Ubiquitin-like superfamily protein LENGTH=658		
Niben101Scf03482g02010.1	gb|KFB84052.1|	*-*-	alpha/beta hydrolase [Calothrix sp. 336/3]		
Niben101Scf02762g01004.1	sp|P44933|KEFX_HAEIN	*-**	Glutathione-regulated potassium-efflux system protein	IPR006153 (Cation/H+ exchanger), IPR016040 (NAD(P)-binding domain)	GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf17876g02001.1	sp|Q9SRM0|ATL66_ARATH	-**-	RING-H2 finger protein ATL66		
Niben101Scf01831g03010.1	sp|Q9LL84|DNLI4_ARATH	*-**	DNA ligase 4	IPR012308 (DNA ligase, ATP-dependent, N-terminal), IPR012310 (DNA ligase, ATP-dependent, central), IPR029710 (DNA ligase 4)	GO:0003677 (DNA binding), GO:0003910 (DNA ligase (ATP) activity), GO:0005524 (ATP binding), GO:0006281 (DNA repair), GO:0006310 (DNA recombination), GO:0051103 (DNA ligation involved in DNA repair)
Niben101Scf07051g00004.1	AT3G60400.1	****	Mitochondrial transcription termination factor family protein LENGTH=558	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04033g02010.1	gb|AEW48193.1|	*-*-	disease resistance protein RGH4 [Solanum chacoense]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf15227g00009.1	AT5G67080.1	****	mitogen-activated protein kinase kinase kinase 19 LENGTH=344	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00388g08010.1	sp|Q9LPM9|BCAT6_ARATH	****	Branched-chain-amino-acid aminotransferase 6	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0004084 (branched-chain-amino-acid transaminase activity), GO:0008152 (metabolic process), GO:0009081 (branched-chain amino acid metabolic process)
Niben101Scf04074g00008.1	AT3G05860.1	*-*-	MADS-box transcription factor family protein LENGTH=260	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00503g05016.1	AT3G55570.1	*-*-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=109		
Niben101Scf06305g01017.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Ctg16070g00007.1	AT5G27380.1	*-**	glutathione synthetase 2 LENGTH=539	IPR005615 (Glutathione synthase, eukaryotic), IPR013816 (ATP-grasp fold, subdomain 2)	GO:0004363 (glutathione synthase activity), GO:0005524 (ATP binding), GO:0006750 (glutathione biosynthetic process)
Niben101Scf18531g00003.1	AT5G03795.1	*-*-	Exostosin family protein LENGTH=518	IPR004263 (Exostosin-like)	
Niben101Scf03864g01004.1	sp|Q9XGY5|TIM13_ORYSJ	***-	Mitochondrial import inner membrane translocase subunit Tim13	IPR004217 (Tim10/DDP family zinc finger)	
Niben101Scf37888g00004.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf02452g05006.1	AT1G21600.1	***-	plastid transcriptionally active 6 LENGTH=328		
Niben101Scf08526g04004.1	ref|YP_006291825.1|	-**-	orf57 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81202.1| orf57 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf06081g01014.1	sp|Q9LSL9|PP445_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02137g00006.1	AT2G26500.2	****	cytochrome b6f complex subunit (petM), putative LENGTH=125	IPR012595 (PetM of cytochrome b6/f complex subunit 7)	GO:0009512 (cytochrome b6f complex)
Niben101Scf04829g01002.1	sp|Q38857|XTH22_ARATH	*-**	Xyloglucan endotransglucosylase/hydrolase protein 22	IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03848g01005.1	emb|CDX75979.1|	*-*-	BnaC03g40620D [Brassica napus]	IPR008889 (VQ)	
Niben101Scf02433g06003.1	sp|Q08507|ACCO3_PETHY	*-*-	1-aminocyclopropane-1-carboxylate oxidase 3	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf13017g00008.1	AT3G54700.1	****	phosphate transporter 1;7 LENGTH=535	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005315 (inorganic phosphate transmembrane transporter activity), GO:0006817 (phosphate ion transport), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03114g04010.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12243g01001.1	ref|XP_007028894.1|	***-	Nucleolar protein gar2-related isoform 1 [Theobroma cacao] gb|EOY09396.1| Nucleolar protein gar2-related isoform 1 [Theobroma cacao]		
Niben101Scf05222g06007.1	sp|Q9XGM2|MRE11_ARATH	--*-	Double-strand break repair protein MRE11		
Niben101Scf00077g05015.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf21578g00005.1			Unknown protein		
Niben101Scf01818g07015.1	AT5G13410.1	***-	FKBP-like peptidyl-prolyl cis-trans isomerase family protein LENGTH=256	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf05720g06003.1	sp|Q9BZH6|WDR11_HUMAN	*-*-	WD repeat-containing protein 11	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05316g03010.1	AT3G53130.1	***-	Cytochrome P450 superfamily protein LENGTH=539	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04838g02009.1	sp|Q9C7N4|GDL15_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf20985g00002.1	sp|O64847|U136_ARATH	--**	UPF0136 membrane protein	IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane)
Niben101Scf06626g00001.1	sp|Q52KW0|SHAN2_XENLA	--*-	SH3 and multiple ankyrin repeat domains protein 2	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf06758g00009.1			Unknown protein		
Niben101Scf03203g07026.1	sp|P28178|PK2_DICDI	*-**	Protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf15260g00002.1	sp|Q0WP01|PTR9_ARATH	***-	Protein NRT1/ PTR FAMILY 5.10	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf02471g06004.1	AT4G17080.1	*-*-	Histone H3 K4-specific methyltransferase SET7/9 family protein LENGTH=513		
Niben101Scf04776g01001.1	sp|Q9ZT66|E134_MAIZE	***-	Endo-1,3;1,4-beta-D-glucanase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf00732g01002.1	ref|XP_002536345.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF26037.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00739g02023.1	AT1G48570.1	*-**	zinc finger (Ran-binding) family protein LENGTH=455	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf04339g02012.1	sp|O48650|SUI1_SALBA	****	Protein translation factor SUI1 homolog	IPR005874 (Eukaryotic translation initiation factor SUI1)	GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf02264g00007.1	sp|A4QLV9|PSBB_NASOF	*-**	Photosystem II CP47 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf02812g02019.1	sp|O22757|MLO8_ARATH	***-	MLO-like protein 8	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf00406g00015.1	sp|P14953|TRPE_CLOTM	*-*-	Anthranilate synthase component 1	IPR005802 (Para-aminobenzoate synthase, component I), IPR029062 (Class I glutamine amidotransferase-like)	GO:0009058 (biosynthetic process), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0016833 (oxo-acid-lyase activity)
Niben101Scf03341g00010.1	sp|Q0WPZ6|PP158_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf11214g00013.1	sp|Q39182|DEF02_ARATH	-**-	Defensin-like protein 2	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf08198g00002.1	AT1G15660.1	*-*-	centromere protein C LENGTH=705		
Niben101Scf18577g00009.1	sp|Q9SSE5|COL9_ARATH	****	Zinc finger protein CONSTANS-LIKE 9	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf22015g01001.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf08230g00016.1	AT5G03540.3	*-**	exocyst subunit exo70 family protein A1 LENGTH=664	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf00428g02030.1	gb|KEH31798.1|	*-*-	S-adenosylmethionine-dependent methyltransferase, putative [Medicago truncatula]	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf06852g02001.1	emb|CDX67716.1|	***-	BnaA07g17560D [Brassica napus]		
Niben101Scf05720g06002.1	AT2G42160.1	****	zinc finger (ubiquitin-hydrolase) domain-containing protein LENGTH=488	IPR001607 (Zinc finger, UBP-type), IPR011422 (BRCA1-associated 2), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02726g03006.1	sp|Q9LW50|ERF2_NICSY	*-**	Ethylene-responsive transcription factor 2	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02648g01001.1	dbj|BAA81661.1|	--*-	F1F0-ATPase inhibitor protein [Oryza sativa Japonica Group]		
Niben101Scf06305g02007.1	gb|KEH18748.1|	*-*-	intracellular protein transporter USO1-like protein, putative [Medicago truncatula]		
Niben101Scf00288g10005.1	sp|P0C1H8|PPIA2_RHIO9	****	Peptidyl-prolyl cis-trans isomerase A2	IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase), IPR029000 (Cyclophilin-like domain)	GO:0000413 (protein peptidyl-prolyl isomerization), GO:0003755 (peptidyl-prolyl cis-trans isomerase activity), GO:0006457 (protein folding)
Niben101Scf05158g00008.1	sp|Q9SCV3|BGAL9_ARATH	***-	Beta-galactosidase 9	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf00774g01026.1	sp|A6NCW0|U17L3_HUMAN	*-**	Ubiquitin carboxyl-terminal hydrolase 17-like protein 3	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf10608g00008.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03735g01004.1	sp|A5DSI2|NAR1_LODEL	--*-	Cytosolic Fe-S cluster assembly factor NAR1		
Niben101Scf02381g04020.1	AT1G67080.1	***-	abscisic acid (aba)-deficient 4 LENGTH=220	IPR025461 (Protein of unknown function DUF4281)	
Niben101Scf02750g01007.1	AT5G08750.3	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=370	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0008270 (zinc ion binding)
Niben101Scf09906g02006.1	AT3G08640.1	***-	Protein of unknown function (DUF3411) LENGTH=337	IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf01922g10004.1	AT1G04600.1	****	myosin XI A LENGTH=1730	IPR000048 (IQ motif, EF-hand binding site), IPR002710 (Dilute), IPR004009 (Myosin, N-terminal, SH3-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf06186g03001.1	sp|Q8DJ44|TATA_THEEB	*-**	Sec-independent protein translocase protein TatA	IPR003369 (Sec-independent protein translocase protein TatA/B/E)	GO:0005886 (plasma membrane), GO:0008565 (protein transporter activity), GO:0009306 (protein secretion), GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf00449g06013.1	sp|B9HMF8|CSPLM_POPTR	***-	CASP-like protein 4C1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf02459g05010.1	sp|Q8H038|KATAM_ORYSJ	***-	Xyloglucan galactosyltransferase KATAMARI1 homolog	IPR004263 (Exostosin-like)	
Niben101Scf11491g02019.1	ref|XP_002531309.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF31081.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02444g00032.1	sp|Q2HG76|MPH1_CHAGB	*-*-	ATP-dependent DNA helicase MPH1	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf04440g00008.1	sp|Q9LMJ1|CHX14_ARATH	****	Cation/H(+) antiporter 14	IPR006153 (Cation/H+ exchanger), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00163g11001.1	sp|Q9FJN9|PABN2_ARATH	****	Polyadenylate-binding protein 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01313g06022.1	sp|Q9FZ70|FDL1_ARATH	*-*-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02814g00001.1	sp|Q9XEX2|PRX2B_ARATH	***-	Peroxiredoxin-2B	IPR012336 (Thioredoxin-like fold)	GO:0016491 (oxidoreductase activity)
Niben101Scf01374g15011.1	ref|NP_001047761.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf01453g02009.1	gb|AAP53948.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR018289 (MULE transposase domain)	
Niben101Scf06790g00018.1			Unknown protein		
Niben101Scf06223g00002.1	AT4G11400.1	*-*-	ARID/BRIGHT DNA-binding domain;ELM2 domain protein LENGTH=573	IPR000949 (ELM2 domain)	
Niben101Scf00574g11002.1			Unknown protein		
Niben101Scf11552g02001.1	AT4G28500.1	***-	NAC domain containing protein 73 LENGTH=305	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01858g00009.1	AT2G37710.1	****	receptor lectin kinase LENGTH=675	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030246 (carbohydrate binding)
Niben101Scf00340g03006.1	sp|P73016|FABI_SYNY3	***-	Enoyl-[acyl-carrier-protein] reductase [NADH] FabI	IPR002347 (Glucose/ribitol dehydrogenase)	
Niben101Scf03254g06015.1	emb|CDY37278.1|	***-	BnaA01g24980D [Brassica napus]		
Niben101Scf06085g01011.1			Unknown protein		
Niben101Scf04033g02011.1	gb|AAT39951.2|	*-*-	Disease resistance protein, putative [Solanum demissum]		
Niben101Scf01841g00005.1	tpg|DAA56927.1|	--*-	TPA: hypothetical protein ZEAMMB73_090961 [Zea mays]		
Niben101Scf01587g01013.1	sp|Q8RCT3|PSUG_CALS4	*-*-	Pseudouridine-5'-phosphate glycosidase	IPR004158 (Protein of unknown function DUF247, plant), IPR007342 (Pseudouridine-5'-phosphate glycosidase)	GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf15784g00001.1	gb|EMS62992.1|	--*-	Blue copper protein [Triticum urartu]	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf00167g01008.1	sp|Q9C7F5|NTF2_ARATH	****	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2)	GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf02217g04008.1	sp|Q02921|NO93_SOYBN	***-	Early nodulin-93	IPR005050 (Early nodulin 93 ENOD93 protein)	
Niben101Scf12089g00029.1	sp|Q9T0D6|PP306_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf03021g03011.1	sp|Q9ZUW3|PP172_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf12762g00010.1	AT2G27770.1	***-	Plant protein of unknown function (DUF868) LENGTH=320	IPR008586 (Protein of unknown function DUF868, plant)	
Niben101Scf02245g02009.1	ref|XP_002528059.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF34309.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04347g01026.1	sp|Q9M358|UVSSA_ARATH	***-	UV-stimulated scaffold protein A homolog	IPR018610 (Protein of unknown function DUF2043)	
Niben101Scf07466g02010.1	sp|Q8BSN9|FAKD3_MOUSE	*-*-	FAST kinase domain-containing protein 3	IPR013584 (RAP domain)	
Niben101Scf04077g02006.1	sp|O24412|PSD7A_ARATH	***-	26S proteasome non-ATPase regulatory subunit 7 homolog A	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR024969 (Rpn11/EIF3F C-terminal domain)	GO:0005515 (protein binding)
Niben101Scf15653g02010.1	sp|Q9M1V3|PP296_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01634g07023.1	sp|Q7Y232|U73B4_ARATH	*-*-	UDP-glycosyltransferase 73B4	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf07103g00008.1	AT2G43465.1	***-	RNA-binding ASCH domain protein LENGTH=388	IPR015947 (PUA-like domain)	
Niben101Scf00439g02004.1			Unknown protein		
Niben101Scf07944g05002.1	sp|B1AZ99|OTUD3_MOUSE	*-*-	OTU domain-containing protein 3	IPR004027 (SEC-C motif)	
Niben101Ctg06829g00002.1	sp|A7Q0V4|METK5_VITVI	****	S-adenosylmethionine synthase 5	IPR002133 (S-adenosylmethionine synthetase)	GO:0004478 (methionine adenosyltransferase activity), GO:0005524 (ATP binding), GO:0006556 (S-adenosylmethionine biosynthetic process)
Niben101Scf01072g03003.1	AT2G19170.1	****	subtilisin-like serine protease 3 LENGTH=815	IPR015500 (Peptidase S8, subtilisin-related), IPR023827 (Peptidase S8, subtilisin,  Asp-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Ctg15860g00004.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02572g03009.1	ref|NP_001172203.1|	--*-	OsJ_00601 [Oryza sativa Japonica Group] dbj|BAH90933.1| [Oryza sativa Japonica Group] dbj|BAN78703.1| cadmium tolerant 3 [Oryza sativa Japonica Group]		
Niben101Scf00439g06002.1	gb|EEZ33516.1|	*-*-	conserved hypothetical protein [Brucella sp. 83/13]		
Niben101Scf01375g09027.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf02093g05021.1	ref|XP_002527707.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF34666.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00286g01006.1	sp|Q9LN01|PPR21_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01150g01013.1	sp|Q8X119|ACT_EXODE	*-*-	Actin	IPR004000 (Actin family)	
Niben101Scf09432g00007.1	sp|Q3C1N4|YCF2_NICSY	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf00661g01014.1	sp|Q4R380|DPOLL_MACFA	*-**	DNA polymerase lambda	IPR022312 (DNA polymerase family X), IPR028207 (DNA polymerase beta, palm domain), IPR029398 (DNA polymerase beta, thumb domain)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0016779 (nucleotidyltransferase activity), GO:0034061 (DNA polymerase activity)
Niben101Scf00537g02019.1	emb|CDY48761.1|	***-	BnaA02g30220D [Brassica napus]	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf10442g00013.1	sp|A9WED7|NUOD1_CHLAA	*-**	NADH-quinone oxidoreductase subunit D 1	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01108g03001.1	AT1G08230.2	***-	Transmembrane amino acid transporter family protein LENGTH=451	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf00202g00006.1	AT2G21610.1	****	pectinesterase 11 LENGTH=352	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02423g02010.1	AT3G21480.1	*-*-	BRCT domain-containing DNA repair protein LENGTH=1041		
Niben101Scf05060g00002.1	sp|P10973|NLTPA_RICCO	****	Non-specific lipid-transfer protein A	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf09321g02026.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08526g02008.1	sp|P79136|CAPZB_BOVIN	*-**	F-actin-capping protein subunit beta	IPR001698 (F-actin-capping protein subunit beta)	GO:0003779 (actin binding), GO:0005737 (cytoplasm), GO:0008290 (F-actin capping protein complex), GO:0030036 (actin cytoskeleton organization), GO:0051016 (barbed-end actin filament capping)
Niben101Scf13206g02018.1	AT3G61200.1	***-	Thioesterase superfamily protein LENGTH=188	IPR029069 (HotDog domain)	
Niben101Scf02145g01003.1	sp|Q0KL01|UBX2B_MOUSE	***-	UBX domain-containing protein 2B	IPR012989 (SEP domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf02537g04006.1	ref|XP_003615152.1|	****	2-dehydro-3-deoxyphosphoheptonate aldolase (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase) [Medicago truncatula] gb|AES98110.1| phospho-2-dehydro-3-deoxyheptonate aldolase [Medicago truncatula]	IPR002480 (DAHP synthetase, class II)	GO:0003849 (3-deoxy-7-phosphoheptulonate synthase activity), GO:0009073 (aromatic amino acid family biosynthetic process)
Niben101Scf06942g02006.1	AT2G30140.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=455	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00288g11016.1	sp|Q9FGI1|LTN1_ARATH	*-*-	E3 ubiquitin-protein ligase listerin	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06087g12014.1	sp|Q05B17|WDR48_XENTR	*-*-	WD repeat-containing protein 48	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf07465g03010.1	sp|P14232|TGA1A_TOBAC	*-**	TGACG-sequence-specific DNA-binding protein TGA-1A	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00639g02005.1	sp|Q2HIV9|BH035_ARATH	*-*-	Transcription factor bHLH35	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00508g09017.1	gb|ADV59376.1|	***-	GAGA-binding transcriptional activator [Triphysaria pusilla]	IPR010409 (GAGA-binding transcriptional activator)	
Niben101Scf04096g01008.1	ref|YP_001152134.1|	*-*-	ORF41g [Pinus koraiensis] gb|ABP35380.1| ORF41g [Pinus koraiensis]		
Niben101Scf00934g01008.1	AT4G02920.2	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=419		
Niben101Scf25396g00003.1	gb|KEH23195.1|	***-	plant/T10O8-60 protein [Medicago truncatula]		
Niben101Scf07304g04004.1	sp|P73726|HGGT_SYNY3	*-*-	Homogentisate phytyltransferase		
Niben101Scf02354g12007.1	sp|A7SDW5|EIF3L_NEMVE	****	Eukaryotic translation initiation factor 3 subunit L	IPR019382 (Translation initiation factor 3 complex subunit L)	GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf04754g00001.1			Unknown protein		
Niben101Scf00332g06008.1	gb|ACG37233.1|	****	universal stress protein [Zea mays]	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf01604g00010.1	AT5G54510.1	***-	Auxin-responsive GH3 family protein LENGTH=612	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Ctg05021g00002.1	sp|B9JZ87|DNAK_AGRVS	*-*-	Chaperone protein DnaK	IPR013126 (Heat shock protein 70 family)	
Niben101Scf01859g02012.1	sp|Q9S7T8|SPZX_ARATH	*-*-	Serpin-ZX	IPR000215 (Serpin family), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf01075g02028.1	sp|Q7SYV0|SYFAB_XENLA	*-*-	Phenylalanine--tRNA ligase alpha subunit B		
Niben101Scf01897g03007.1	sp|Q9SCU0|SDR2A_ARATH	****	Short-chain dehydrogenase reductase 2a	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf04407g01009.1	ref|XP_002519590.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF42801.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06562g02015.1	AT5G50410.1	*-*-	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). LENGTH=259		
Niben101Scf08381g02003.1			Unknown protein		
Niben101Scf02194g00001.1	ref|XP_003590872.1|	*-*-	F-box protein PP2-B1 [Medicago truncatula]	IPR025886 (Phloem protein 2-like)	
Niben101Scf08702g00001.1	sp|Q94KJ7|VPS33_ARATH	***-	Vacuolar protein-sorting-associated protein 33 homolog	IPR001619 (Sec1-like protein), IPR027482 (Sec1-like, domain 2)	GO:0006904 (vesicle docking involved in exocytosis), GO:0016192 (vesicle-mediated transport)
Niben101Scf04040g07008.1	sp|A9ULB4|TRIA1_XENTR	***-	TP53-regulated inhibitor of apoptosis 1	IPR007918 (Mitochondrial distribution/morphology family 35/apoptosis)	
Niben101Scf05217g01001.1			Unknown protein		
Niben101Scf08576g01003.1	sp|Q9C5X8|MOCOS_ARATH	*-*-	Molybdenum cofactor sulfurase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01396g03002.1	sp|Q9XI23|BOR4_ARATH	***-	Boron transporter 4	IPR003020 (Bicarbonate transporter, eukaryotic)	GO:0005452 (inorganic anion exchanger activity), GO:0006820 (anion transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf02235g04010.1	sp|A2C6X1|ATPL_PROM3	****	ATP synthase subunit c	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf00745g00021.1	ref|XP_003588448.1|	--*-	Enod93 protein [Medicago truncatula] gb|AES58699.1| early nodulin 93 [Medicago truncatula] gb|AFK42368.1| unknown [Medicago truncatula]	IPR005050 (Early nodulin 93 ENOD93 protein)	
Niben101Scf06542g00001.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf06004g00015.1	sp|Q9SH60|PP103_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04205g03008.1	sp|Q9LDH0|XYLT_ARATH	***-	Beta-(1,2)-xylosyltransferase	IPR007657 (Glycosyltransferase AER61, uncharacterised)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf00219g01004.1	gb|KAK44454.1|	***-	NAD-dependent dehydratase [Burkholderia sp. MP-1]	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf08020g01008.1	sp|Q4QQW1|REEP4_RAT	*-*-	Receptor expression-enhancing protein 4	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Ctg09634g00002.1	sp|Q9ZUX7|IPT2_ARATH	*-**	tRNA dimethylallyltransferase 2	IPR002627 (tRNA isopentenyltransferase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0008033 (tRNA processing)
Niben101Scf01596g07002.1	AT1G01630.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=255	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf03425g03016.1	sp|Q63259|PTPRN_RAT	*-**	Receptor-type tyrosine-protein phosphatase-like N	IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf00890g01028.1	sp|P62482|KCAB2_MOUSE	***-	Voltage-gated potassium channel subunit beta-2	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	
Niben101Scf01072g02012.1	sp|Q84MA5|CAAT1_ARATH	****	Cationic amino acid transporter 1	IPR002293 (Amino acid/polyamine transporter I), IPR029485 (Cationic amino acid transporter, C-terminal)	GO:0003333 (amino acid transmembrane transport), GO:0015171 (amino acid transmembrane transporter activity), GO:0016020 (membrane)
Niben101Scf16132g00001.1	AT1G08720.1	*-*-	Protein kinase superfamily protein LENGTH=933		
Niben101Scf00052g04001.1	sp|Q9UJW8|ZN180_HUMAN	*-*-	Zinc finger protein 180	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf06117g01013.1	sp|B2VGW7|MDH_ERWT9	***-	Malate dehydrogenase	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf04754g01001.1	sp|A9WCD8|GATA_CHLAA	***-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0006412 (translation), GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf00750g04008.1	sp|Q0WPQ2|ETR2_ARATH	****	Ethylene receptor 2	IPR005467 (Signal transduction histidine kinase, core), IPR009082 (Signal transduction histidine kinase, homodimeric domain), IPR011006 (CheY-like superfamily), IPR014525 (Signal transduction histidine kinase, hybrid-type, ethylene sensor), IPR029016 (GAF domain-like)	GO:0000155 (phosphorelay sensor kinase activity), GO:0000160 (phosphorelay signal transduction system), GO:0004673 (protein histidine kinase activity), GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0005789 (endoplasmic reticulum membrane), GO:0007165 (signal transduction), GO:0009873 (ethylene-activated signaling pathway), GO:0016020 (membrane)
Niben101Scf08091g00004.1	AT5G18080.1	***-	SAUR-like auxin-responsive protein family LENGTH=90	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02452g06010.1	AT1G21610.3	*-*-	wound-responsive family protein LENGTH=685	IPR014840 (Hpc2-related domain), IPR026949 (Ubinuclein/Yemanuclein)	
Niben101Scf28115g01011.1	ref|WP_026732101.1|	--*-	CAB/ELIP/HLIP family protein [Fischerella sp. PCC 9605]	IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf02621g05002.1	sp|A3LQF9|UBA4_PICST	--*-	Adenylyltransferase and sulfurtransferase UBA4		
Niben101Scf09203g01025.1	sp|A2A891|CMTA1_MOUSE	--**	Calmodulin-binding transcription activator 1	IPR000048 (IQ motif, EF-hand binding site), IPR014756 (Immunoglobulin E-set), IPR020683 (Ankyrin repeat-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf12858g01027.1	AT1G21480.1	***-	Exostosin family protein LENGTH=462	IPR004263 (Exostosin-like)	
Niben101Scf04636g01004.1	AT4G19185.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=398	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf02309g01009.1	sp|Q9FZ70|FDL1_ARATH	***-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02461g04022.1	AT1G54320.1	***-	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein LENGTH=349	IPR005045 (CDC50/LEM3 family)	GO:0016020 (membrane)
Niben101Scf00051g00013.1	emb|CDY43021.1|	*-*-	BnaA03g11680D [Brassica napus]		
Niben101Scf01634g00022.1	sp|Q9LVQ5|PP432_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02124g01035.1	AT5G48930.1	*-**	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase LENGTH=433	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf04995g17006.1	AT5G23200.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=399		
Niben101Scf03865g00007.1	sp|Q9LJF8|FBL47_ARATH	--*-	F-box/LRR-repeat protein		
Niben101Scf02720g08001.1	sp|Q9FE67|ERF80_ARATH	*-**	Ethylene-responsive transcription factor 9	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00388g08015.1	AT5G18410.1	*-*-	transcription activators LENGTH=1283		
Niben101Scf01642g02006.1	AT1G03470.1	***-	Kinase interacting (KIP1-like) family protein LENGTH=269	IPR011684 (KIP1-like)	
Niben101Scf07383g00007.1	sp|Q39103|G3OX1_ARATH	*-*-	Gibberellin 3-beta-dioxygenase 1		
Niben101Scf12866g00014.1	AT4G36180.1	*-*-	Leucine-rich receptor-like protein kinase family protein LENGTH=1136	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf12205g04004.1	sp|Q8K2F0|BRD3_MOUSE	*-*-	Bromodomain-containing protein 3	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf02955g05012.1	sp|Q9LNW3|P2C03_ARATH	****	Protein phosphatase 2C 3	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf00960g03015.1			Unknown protein		
Niben101Scf02170g02008.1	ref|NP_001056109.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf01240g10017.1			Unknown protein		
Niben101Scf03921g00008.1	dbj|BAF30983.1|	*-*-	basic helix-loop-helix protein [Nicotiana tabacum]		
Niben101Scf14273g00006.1	sp|Q54UK0|PLDA_DICDI	*-**	Phospholipase D A	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0004630 (phospholipase D activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0046470 (phosphatidylcholine metabolic process)
Niben101Scf11684g00005.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01046g02009.1	sp|Q96HR9|REEP6_HUMAN	***-	Receptor expression-enhancing protein 6	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf01241g02001.1	emb|CAA65045.1|	--*-	defensin [Capsicum annuum]		
Niben101Scf04117g06010.1	sp|Q40561|IP21_TOBAC	*-**	Proteinase inhibitor type-2	IPR003465 (Proteinase inhibitor I20, Pin2)	GO:0004867 (serine-type endopeptidase inhibitor activity)
Niben101Scf01308g03018.1	gb|AAD31079.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf09127g01003.1	sp|Q9FZ36|M3K2_ARATH	--*-	Mitogen-activated protein kinase kinase kinase 2		
Niben101Scf07741g01002.1	sp|Q9WVB0|RBPMS_MOUSE	*-**	RNA-binding protein with multiple splicing	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02190g05002.1	sp|B5EZU8|UBIE_SALA4	****	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	IPR004033 (UbiE/COQ5 methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf14297g01005.1			Unknown protein		
Niben101Scf03432g01016.1			Unknown protein		
Niben101Scf02622g12049.1	AT5G24710.1	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=1377	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf07466g03003.1	sp|P39958|GDI1_YEAST	*-*-	Rab GDP-dissociation inhibitor	IPR018203 (GDP dissociation inhibitor)	
Niben101Scf01773g02012.1	ref|WP_017311525.1|	***-	membrane protein [Fischerella sp. PCC 9339]	IPR005031 (Streptomyces cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf07069g01008.1	sp|Q7SXU0|EI3JA_DANRE	*-**	Eukaryotic translation initiation factor 3 subunit J-A	IPR013906 (Eukaryotic translation initiation factor 3 subunit J), IPR023194 (Eukaryotic translation initiation factor 3-like domain)	GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf06275g04013.1	sp|Q9FKP1|CCX1_ARATH	***-	Cation/calcium exchanger 1	IPR004837 (Sodium/calcium exchanger membrane region)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00420g05008.1			Unknown protein		
Niben101Scf00773g11001.1	sp|O80920|PYL4_ARATH	***-	Abscisic acid receptor PYL4	IPR019587 (Polyketide cyclase/dehydrase), IPR023393 (START-like domain)	
Niben101Scf07402g02008.1	sp|Q5VTL8|PR38B_HUMAN	*-*-	Pre-mRNA-splicing factor 38B	IPR005037 (Pre-mRNA-splicing factor 38)	
Niben101Scf05030g02011.1	sp|Q6NVQ1|JAGN1_XENTR	--*-	Protein jagunal homolog 1	IPR009787 (Protein jagunal)	GO:0005789 (endoplasmic reticulum membrane), GO:0007029 (endoplasmic reticulum organization)
Niben101Scf12270g00013.1	sp|Q3SZ73|ABHDB_BOVIN	***-	Alpha/beta hydrolase domain-containing protein 11	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04544g00006.1	ref|XP_001318572.1|	--**	Myb-like DNA-binding domain containing protein [Trichomonas vaginalis G3] gb|EAY06349.1| Myb-like DNA-binding domain containing protein [Trichomonas vaginalis G3]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf07778g02007.1	gb|KEH26436.1|	****	APO RNA-binding protein [Medicago truncatula]	IPR001496 (SOCS protein, C-terminal), IPR023342 (APO domain)	GO:0003723 (RNA binding), GO:0035556 (intracellular signal transduction)
Niben101Scf08819g01006.1	sp|Q9SUQ8|DIR6_ARATH	***-	Dirigent protein 6	IPR004265 (Plant disease resistance response protein)	
Niben101Scf02513g03003.1	sp|Q54JC8|PUR4_DICDI	*-*-	Phosphoribosylformylglycinamidine synthase	IPR016188 (PurM, N-terminal-like)	GO:0003824 (catalytic activity)
Niben101Scf00854g05036.1			Unknown protein		
Niben101Scf07103g01027.1	sp|Q8HVL8|NDHI_RENSL	****	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic	IPR010226 (NADH-quinone oxidoreductase, chain I), IPR017896 (4Fe-4S ferredoxin-type, iron-sulphur binding domain)	GO:0016020 (membrane), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01972g01011.1	AT2G48140.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=200	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf04506g02002.1	AT3G26560.1	****	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf01785g01010.1	sp|Q8VE92|RBM4B_MOUSE	*-**	RNA-binding protein 4B	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf05818g00018.1	sp|Q8L799|MIOX1_ARATH	****	Inositol oxygenase 1	IPR007828 (Inositol oxygenase)	GO:0005506 (iron ion binding), GO:0005737 (cytoplasm), GO:0019310 (inositol catabolic process), GO:0050113 (inositol oxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf25777g00001.1	sp|P46897|ATHB7_ARATH	***-	Homeobox-leucine zipper protein ATHB-7	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf03080g04021.1	sp|Q7SXW3|LRC40_DANRE	*-*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat), IPR003882 (Pistil-specific extensin-like protein), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0005199 (structural constituent of cell wall), GO:0005515 (protein binding)
Niben101Scf03263g08005.1	sp|Q6NV31|WDR82_DANRE	*-*-	WD repeat-containing protein 82	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf06782g02009.1	sp|F4JLI5|XDH2_ARATH	*-*-	Xanthine dehydrogenase 2	IPR000674 (Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead), IPR008274 (Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00302g03027.1	sp|Q8RWU5|FBL3_ARATH	*-*-	F-box/LRR-repeat protein 3	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf03332g00001.1	AT1G35510.1	***-	O-fucosyltransferase family protein LENGTH=568	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf09547g02013.1	emb|CDY36856.1|	*-*-	BnaC08g09910D [Brassica napus]	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf02077g12008.1	sp|Q9FNL2|PP418_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf00177g00010.1			Unknown protein		
Niben101Scf02502g21007.1	sp|Q54JC8|PUR4_DICDI	*-*-	Phosphoribosylformylglycinamidine synthase	IPR016188 (PurM, N-terminal-like)	GO:0003824 (catalytic activity)
Niben101Scf00595g02026.1	sp|Q9ZUH5|SDR2B_ARATH	****	Short-chain dehydrogenase/reductase 2b	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf03964g04005.1	sp|Q91Z38|TTC1_MOUSE	*-*-	Tetratricopeptide repeat protein 1	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01367g00023.1	AT2G31010.1	*-**	Protein kinase superfamily protein LENGTH=775	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf34590g00001.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf09107g00014.1	sp|Q9H0X6|RN208_HUMAN	--*-	RING finger protein 208	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027370 (RING-type zinc-finger, LisH dimerisation motif)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04741g05002.1	AT1G78520.1	***-	Carbohydrate-binding X8 domain superfamily protein LENGTH=115	IPR012946 (X8 domain)	
Niben101Scf01241g03010.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05298g03001.1			Unknown protein		
Niben101Scf07493g01001.1	sp|Q6X7J9|WOX4_ARATH	***-	WUSCHEL-related homeobox 4	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf00420g01003.1	AT5G18460.1	***-	Protein of Unknown Function (DUF239) LENGTH=430	IPR004314 (Domain of unknown function DUF239), IPR025521 (Domain of unknown function DUF4409)	
Niben101Scf02762g01005.1	sp|Q6C4D4|DBP2_YARLI	*-**	ATP-dependent RNA helicase DBP2	IPR001650 (Helicase, C-terminal), IPR001878 (Zinc finger, CCHC-type), IPR012562 (GUCT), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf05581g00006.1	sp|A2CC89|RS10_PROM3	***-	30S ribosomal protein S10	IPR001848 (Ribosomal protein S10), IPR027486 (Ribosomal protein S10 domain)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00987g02009.1	AT5G43310.1	***-	COP1-interacting protein-related LENGTH=1237		
Niben101Scf30845g00001.1	sp|Q9MB94|ACCO_PRUMU	--*-	1-aminocyclopropane-1-carboxylate oxidase	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf39461g00001.1	sp|Q01912|1A1C_VIGRR	***-	1-aminocyclopropane-1-carboxylate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Ctg13864g00004.1	sp|Q8RW98|BRK1_MAIZE	***-	Protein BRICK1	IPR019466 (Matrilin, coiled-coil trimerisation domain)	
Niben101Scf04219g00001.1	AT1G78915.3	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=405	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01264g00012.1	sp|Q7X7A9|FB4_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf04528g13005.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf05150g00002.1			Unknown protein	IPR029071 (Ubiquitin-related domain)	
Niben101Scf03939g03013.1			Unknown protein		
Niben101Scf03705g02009.1	sp|Q89WU7|PUR9_BRADU	*-**	Bifunctional purine biosynthesis protein PurH	IPR002695 (AICARFT/IMPCHase bienzyme)	GO:0003937 (IMP cyclohydrolase activity), GO:0004643 (phosphoribosylaminoimidazolecarboxamide formyltransferase activity), GO:0006164 (purine nucleotide biosynthetic process)
Niben101Scf05627g00009.1	gb|AES82595.2|	--*-	acetyltransferase (GNAT) domain protein [Medicago truncatula]		
Niben101Scf04528g13006.1	sp|Q4HTT1|H2A_GIBZE	***-	Histone H2A	IPR009072 (Histone-fold)	
Niben101Scf04651g00004.1	AT5G11160.1	***-	adenine phosphoribosyltransferase 5 LENGTH=191	IPR029057 (Phosphoribosyltransferase-like)	GO:0009116 (nucleoside metabolic process)
Niben101Scf02994g04023.1	AT1G66480.1	***-	plastid movement impaired 2 LENGTH=225	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf02303g00021.1	sp|Q2TBI8|NUD22_BOVIN	--*-	Nucleoside diphosphate-linked moiety X motif 22		
Niben101Scf02252g01033.1	sp|A8A2C2|ARNA_ECOHS	***-	Bifunctional polymyxin resistance protein ArnA	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf19439g00001.1	AT4G25410.1	****	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=230	IPR015660 (Achaete-scute transcription factor-related)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf11944g01006.1	AT1G17620.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=264	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf08308g00002.1	sp|Q6UX07|DHR13_HUMAN	****	Dehydrogenase/reductase SDR family member 13	IPR002198 (Short-chain dehydrogenase/reductase SDR)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf14662g00002.1	ref|NP_001055589.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf00592g04013.1	sp|B5DE69|CHD8_XENTR	*-**	Chromodomain-helicase-DNA-binding protein 8	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf02887g01010.1	sp|O24592|NCED1_MAIZE	*-*-	9-cis-epoxycarotenoid dioxygenase 1, chloroplastic	IPR004294 (Carotenoid oxygenase)	
Niben101Scf01012g01016.1	sp|Q9FJR0|RENT1_ARATH	*-*-	Regulator of nonsense transcripts 1 homolog		
Niben101Scf04477g00011.1	AT1G50660.1	***-	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=725		
Niben101Scf03413g02021.1	sp|Q940H3|TBL36_ARATH	***-	Protein trichome birefringence-like 36	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf16469g01001.1	sp|Q9FLJ2|NC100_ARATH	*-*-	NAC domain-containing protein 100	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02074g07069.1			Unknown protein		
Niben101Scf39332g00003.1			Unknown protein		
Niben101Scf00155g04014.1	AT5G56350.1	****	Pyruvate kinase family protein LENGTH=498	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf04908g00014.1	gb|KEH19300.1|	--*-	DUF223 domain protein [Medicago truncatula]		
Niben101Scf02663g00019.1	sp|Q2YDU3|OTUD5_RAT	*-*-	OTU domain-containing protein 5	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf00737g00006.1	AT4G14420.1	***-	HR-like lesion-inducing protein-related LENGTH=158	IPR008637 (HR-like lesion-inducer)	
Niben101Scf01367g00024.1			Unknown protein		
Niben101Scf03436g01016.1	sp|E3SU11|ALL13_OLEEU	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf02068g05023.1	sp|Q09263|EFR3_CAEEL	*-*-	Protein EFR3 homolog	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf02145g05022.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01633g00024.1	sp|P22413|ENPP1_HUMAN	*-*-	Ectonucleotide pyrophosphatase/phosphodiesterase family member 1	IPR002591 (Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf03203g02001.1	sp|Q54KL5|WDR5_DICDI	*-*-	WD repeat-containing protein 5 homolog	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00595g00014.1	AT5G52430.1	***-	hydroxyproline-rich glycoprotein family protein LENGTH=438		
Niben101Scf04473g05010.1	sp|P93648|LONM_MAIZE	*-*-	Lon protease homolog, mitochondrial	IPR003111 (Peptidase S16, lon N-terminal), IPR015947 (PUA-like domain), IPR027065 (Lon protease)	GO:0004176 (ATP-dependent peptidase activity), GO:0004252 (serine-type endopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0030163 (protein catabolic process)
Niben101Scf08182g00001.1	gb|EMS59652.1|	***-	THO complex subunit 3 [Triticum urartu]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf08001g01004.1	sp|Q9N4Y9|ZFPL1_CAEEL	***-	Zinc finger protein-like 1 homolog		
Niben101Scf01284g00001.1	emb|CDX99259.1|	***-	BnaC05g33740D [Brassica napus]		
Niben101Scf02828g04005.1	gb|KEH33928.1|	--*-	co-chaperone GrpE family protein [Medicago truncatula]		
Niben101Scf03268g07011.1	AT1G17410.1	*-**	Nucleoside diphosphate kinase family protein LENGTH=181	IPR001564 (Nucleoside diphosphate kinase)	GO:0004550 (nucleoside diphosphate kinase activity), GO:0005524 (ATP binding), GO:0006165 (nucleoside diphosphate phosphorylation), GO:0006183 (GTP biosynthetic process), GO:0006228 (UTP biosynthetic process), GO:0006241 (CTP biosynthetic process)
Niben101Scf05596g00010.1	gb|AFF18811.1|	*-*-	glutathione transferase, partial [Dimocarpus longan]	IPR010987 (Glutathione S-transferase, C-terminal-like)	
Niben101Scf05720g03013.1	AT5G52580.2	*-*-	RabGAP/TBC domain-containing protein LENGTH=690	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf07103g01026.1	sp|B6YR61|NUOH_AZOPC	***-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf13695g01014.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07054g04008.1	sp|O80450|TGT3B_ARATH	*-*-	Trihelix transcription factor GT-3b		
Niben101Scf04052g03014.1	sp|Q9ZUA9|Y2181_ARATH	*-*-	PHD finger protein	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf03351g02011.1			Unknown protein		
Niben101Scf08238g00002.1	AT2G07739.1	*-*-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf00245g04007.1	AT1G51700.1	*-*-	DOF zinc finger protein 1 LENGTH=194	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01515g00003.1	sp|Q28CM8|ARFG2_XENTR	*-**	ADP-ribosylation factor GTPase-activating protein 2	IPR001164 (Arf GTPase activating protein), IPR011993 (Pleckstrin homology-like domain), IPR020683 (Ankyrin repeat-containing domain), IPR027267 (Arfaptin homology (AH) domain/BAR domain)	GO:0005515 (protein binding), GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf14009g02004.1	gb|AFI44305.1|	*-*-	DNA polymerase (mitochondrion) [Silene vulgaris]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf04312g03008.1	sp|Q5HZ36|GAT21_ARATH	*-**	GATA transcription factor 21	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01750g14022.1	sp|P0DI30|CASP2_TRIPD	***-	Casparian strip membrane protein 2	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf03768g02013.1	sp|Q03EQ7|MUTS_PEDPA	*-**	DNA mismatch repair protein MutS	IPR000432 (DNA mismatch repair protein MutS, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding)
Niben101Scf09781g00016.1	sp|Q9SMX9|SPL1_ARATH	****	Squamosa promoter-binding-like protein 1	IPR004333 (Transcription factor, SBP-box), IPR020683 (Ankyrin repeat-containing domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf03245g04004.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07227g01020.1	sp|Q93YS4|AB22G_ARATH	***-	ABC transporter G family member 22	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf10986g00001.1	sp|Q9LV60|CRR55_ARATH	***-	Cysteine-rich repeat secretory protein 55	IPR002902 (Gnk2-homologous domain)	
Niben101Scf07383g03001.1	sp|Q3B8D5|KATL2_XENLA	*-**	Katanin p60 ATPase-containing subunit A-like 2	IPR003959 (ATPase, AAA-type, core), IPR015415 (Vps4 oligomerisation, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028596 (Katanin p60 subunit A1)	GO:0005524 (ATP binding), GO:0008017 (microtubule binding), GO:0008568 (microtubule-severing ATPase activity), GO:0051013 (microtubule severing)
Niben101Scf02553g02008.1	sp|Q9LSL9|PP445_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00123g06029.1	sp|Q9QYL8|LYPA2_RAT	***-	Acyl-protein thioesterase 2	IPR029058 (Alpha/Beta hydrolase fold)	GO:0016787 (hydrolase activity)
Niben101Scf01523g00023.1	sp|Q6GQ69|FAF2B_XENLA	***-	FAS-associated factor 2-B	IPR006577 (UAS), IPR009060 (UBA-like), IPR012336 (Thioredoxin-like fold), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf09151g02024.1	sp|Q8L6J2|RPO2A_TOBAC	--*-	DNA-directed RNA polymerase 2A		
Niben101Scf01237g06006.1			Unknown protein		
Niben101Scf00388g08016.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05081g00014.1	gb|KEH42212.1|	*-*-	myb transcription factor [Medicago truncatula]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf10881g00051.1	ref|XP_003637074.1|	*-*-	Cell wall-associated hydrolase, partial [Medicago truncatula]		
Niben101Scf06349g02016.1	AT3G27820.1	****	monodehydroascorbate reductase 4 LENGTH=488	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR016156 (FAD/NAD-linked reductase, dimerisation domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02502g03009.1	AT2G36895.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 32 Blast hits to 32 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=232		
Niben101Scf02622g10012.1	emb|CAA53243.1|	***-	chloroplast outer envelope 24 kD protein (omp24) [Spinacia oleracea]		
Niben101Scf08872g00008.1	sp|A9IW12|RL24_BART1	*-*-	50S ribosomal protein L24	IPR003256 (Ribosomal protein L24)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01063g11013.1	sp|Q9LJX0|AB19B_ARATH	*-*-	ABC transporter B family member 19	IPR011527 (ABC transporter type 1, transmembrane domain)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf07880g02009.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR010543 (Domain of unknown function DUF1117), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06999g01017.1	AT3G28850.1	***-	Glutaredoxin family protein LENGTH=428	IPR012336 (Thioredoxin-like fold)	GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf07400g01007.1	sp|Q6DEY1|SPF30_XENTR	***-	Survival of motor neuron-related-splicing factor 30	IPR002999 (Tudor domain), IPR010304 (Survival motor neuron)	GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0005737 (cytoplasm), GO:0006397 (mRNA processing)
Niben101Scf01494g02024.1	sp|P33607|NUOL_ECOLI	*-**	NADH-quinone oxidoreductase subunit L	IPR003945 (NADH-plastoquinone oxidoreductase, chain 5)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf03824g02003.1	sp|O04940|CDS1_SOLTU	****	Phosphatidate cytidylyltransferase	IPR000374 (Phosphatidate cytidylyltransferase)	GO:0004605 (phosphatidate cytidylyltransferase activity), GO:0016020 (membrane), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00858g05001.1	sp|Q3IMY5|RL2_NATPD	***-	50S ribosomal protein L2	IPR002171 (Ribosomal protein L2)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02450g03007.1	sp|Q7XPW8|ATG4B_ORYSJ	***-	Cysteine protease ATG4B	IPR005078 (Peptidase C54)	
Niben101Scf04100g00006.1	sp|Q7WKG2|AQPZ_BORBR	***-	Aquaporin Z	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf02597g00002.1	AT2G35250.1	***-	Protein of Unknown Function (DUF239) LENGTH=342	IPR004314 (Domain of unknown function DUF239)	
Niben101Scf00197g00005.1	AT4G26540.1	*-*-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1091	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf08546g05007.1	sp|Q94AA4|PFKA3_ARATH	*-**	ATP-dependent 6-phosphofructokinase 3	IPR000023 (Phosphofructokinase domain)	GO:0003872 (6-phosphofructokinase activity), GO:0006096 (glycolytic process)
Niben101Scf04417g00004.1	sp|Q9JI10|STK3_MOUSE	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00739g04037.1	sp|A4IS40|FOSB_GEOTN	-**-	Metallothiol transferase FosB	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf03990g01010.1	emb|CDY11239.1|	--*-	BnaA03g00750D [Brassica napus]		
Niben101Scf00883g06025.1			Unknown protein		
Niben101Scf00152g19011.1	sp|Q2HJF1|RM53_BOVIN	--*-	39S ribosomal protein L53, mitochondrial	IPR007741 (Ribosomal protein/NADH dehydrogenase domain), IPR012336 (Thioredoxin-like fold)	
Niben101Scf00873g02006.1	sp|Q6K5F8|CDKG1_ORYSJ	*-**	Cyclin-dependent kinase G-1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00488g00003.1	sp|Q9FM19|HIR1_ARATH	***-	Hypersensitive-induced response protein 1	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf00750g04009.1			Unknown protein		
Niben101Scf03993g06006.1	sp|Q9LUE2|TPS18_ARATH	****	Terpenoid synthase 18	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid), IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0008152 (metabolic process), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf03425g03015.1	sp|Q64605|PTPRS_RAT	*-**	Receptor-type tyrosine-protein phosphatase S	IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf00966g04004.1	sp|Q9SWI1|PKS1_ARATH	***-	Protein PHYTOCHROME KINASE SUBSTRATE 1		
Niben101Scf01701g07006.1	AT1G75460.1	****	ATP-dependent protease La (LON) domain protein LENGTH=278	IPR003111 (Peptidase S16, lon N-terminal), IPR015947 (PUA-like domain)	GO:0004176 (ATP-dependent peptidase activity), GO:0006508 (proteolysis)
Niben101Scf00853g08006.1	sp|P38929|ATC2_YEAST	*-*-	Calcium-transporting ATPase 2	IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	
Niben101Scf00219g01005.1	sp|A7MIK3|DNAJ_CROS8	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR007872 (Zinc finger, DPH-type)	
Niben101Scf10095g01001.1	sp|B3GS44|LRE_ARATH	***-	GPI-anchored protein LORELEI		
Niben101Scf04148g00002.1	sp|Q9FGS8|C2GR2_ARATH	***-	C2 and GRAM domain-containing protein	IPR000008 (C2 domain), IPR004182 (GRAM domain)	GO:0005515 (protein binding)
Niben101Scf00530g11016.1	AT5G53110.1	***-	RING/U-box superfamily protein LENGTH=382		
Niben101Scf02249g00011.1	AT3G49590.3	*-*-	Autophagy-related protein 13 LENGTH=618		
Niben101Scf02513g06001.1			Unknown protein		
Niben101Scf05009g03002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01538g00027.1	sp|Q9Z8I3|6PGD_CHLPN	*-**	6-phosphogluconate dehydrogenase, decarboxylating	IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02949g00003.1	sp|Q2PMP7|RR3_SOYBN	--*-	30S ribosomal protein S3, chloroplastic		
Niben101Scf08300g00013.1	AT3G19770.1	*-*-	Vacuolar sorting protein 9 (VPS9) domain LENGTH=520	IPR003123 (Vacuolar sorting protein 9)	
Niben101Scf00292g04006.1	gb|KEH31459.1|	*-*-	Serine/Threonine kinase, plant-type protein [Medicago truncatula]		
Niben101Scf15366g00018.1	emb|CDY24256.1|	***-	BnaC03g42290D [Brassica napus]		
Niben101Scf07162g03016.1	sp|Q9M9R6|PPR43_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01094g03011.1	sp|P01122|RHO_APLCA	****	Ras-like GTP-binding protein RHO	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf03226g04010.1	sp|P15731|UBC4_YEAST	*-*-	Ubiquitin-conjugating enzyme E2 4	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf00395g00006.1	gb|ABD33261.1|	--*-	RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula]		
Niben101Scf01683g05003.1	gb|KEH23715.1|	--*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf02358g03018.1	sp|Q84KJ6|AMT31_ORYSJ	****	Ammonium transporter 3 member 1	IPR001905 (Ammonium transporter), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf10193g00007.1	ref|XP_007033568.1|	*-*-	Mitochondrial Rho GTPase 2 isoform 1 [Theobroma cacao] gb|EOY04494.1| Mitochondrial Rho GTPase 2 isoform 1 [Theobroma cacao]		
Niben101Scf11383g01001.1	ref|XP_002512246.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF49698.1| conserved hypothetical protein [Ricinus communis]	IPR010903 (Protein of unknown function DUF1517)	
Niben101Scf03096g01031.1	sp|O23044|PER3_ARATH	*-**	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02182g09003.1	sp|B0K036|SDHF1_RAT	***-	Succinate dehydrogenase assembly factor 1, mitochondrial	IPR008011 (Complex 1 LYR protein)	
Niben101Scf05609g02027.1	sp|Q4WVM1|RAD5_ASPFU	--*-	DNA repair protein rad5	IPR009060 (UBA-like), IPR014905 (HIRAN domain), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf05346g06007.1	sp|Q9D958|SPCS1_MOUSE	*-**	Signal peptidase complex subunit 1	IPR009542 (Microsomal signal peptidase 12kDa subunit)	GO:0005787 (signal peptidase complex), GO:0006465 (signal peptide processing), GO:0008233 (peptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf07599g00009.1	gb|ABI34321.1|	*-*-	RNase H family protein [Solanum demissum]		
Niben101Scf06628g00004.1	sp|P93311|RM02_ARATH	--*-	60S ribosomal protein L2, mitochondrial		
Niben101Scf08679g03013.1	sp|Q08DS0|KLH21_BOVIN	*-*-	Kelch-like protein 21	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Scf00821g13010.1	AT4G00750.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=633	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf00077g05012.1	sp|Q8VZR2|ASD2_ARATH	****	Alpha-L-arabinofuranosidase 2	IPR010720 (Alpha-L-arabinofuranosidase, C-terminal), IPR017853 (Glycoside hydrolase superfamily)	GO:0046373 (L-arabinose metabolic process), GO:0046556 (alpha-L-arabinofuranosidase activity)
Niben101Scf05368g07009.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR000742 (Epidermal growth factor-like domain), IPR009030 (Insulin-like growth factor binding protein, N-terminal), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03595g10006.1	AT5G23250.1	****	Succinyl-CoA ligase, alpha subunit LENGTH=341	IPR005810 (Succinyl-CoA ligase, alpha subunit), IPR016040 (NAD(P)-binding domain), IPR016102 (Succinyl-CoA synthetase-like)	GO:0003824 (catalytic activity), GO:0003878 (ATP citrate synthase activity), GO:0004775 (succinate-CoA ligase (ADP-forming) activity), GO:0008152 (metabolic process), GO:0048037 (cofactor binding)
Niben101Scf05627g01036.1	sp|Q9XI60|LPP2_ARATH	***-	Lipid phosphate phosphatase 2	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase), IPR028681 (Lipid phosphate phosphatase, plant)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Ctg15575g00004.1	sp|Q9SU25|T2FA_ARATH	*-**	Transcription initiation factor IIF subunit alpha	IPR008851 (Transcription initiation factor IIF, alpha subunit)	GO:0003677 (DNA binding), GO:0003824 (catalytic activity), GO:0005634 (nucleus), GO:0006367 (transcription initiation from RNA polymerase II promoter), GO:0032968 (positive regulation of transcription elongation from RNA polymerase II promoter)
Niben101Scf26545g00006.1	AT5G14030.1	***-	translocon-associated protein beta (TRAPB) family protein LENGTH=195	IPR008856 (Translocon-associated protein subunit beta)	GO:0005783 (endoplasmic reticulum), GO:0016021 (integral component of membrane)
Niben101Scf06576g00001.1			Unknown protein		
Niben101Scf23843g00012.1			Unknown protein		
Niben101Scf10385g00020.1	AT1G30710.1	****	FAD-binding Berberine family protein LENGTH=531	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00709g04011.1	ref|NP_001068324.1|	--*-	product [Oryza sativa Japonica Group]		
Niben101Scf00782g01011.1	gb|ABF97907.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf02652g01032.1	ref|WP_009634070.1|	*-*-	Protein of unknown function (DUF2499) [Synechocystis sp. PCC 7509]	IPR019634 (Uncharacterised protein family Ycf49)	
Niben101Scf05928g00005.1	gb|EMS56326.1|	*-**	LON peptidase N-terminal domain and RING finger protein 1 [Triticum urartu]	IPR003111 (Peptidase S16, lon N-terminal), IPR011990 (Tetratricopeptide-like helical domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR015947 (PUA-like domain)	GO:0004176 (ATP-dependent peptidase activity), GO:0005515 (protein binding), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding)
Niben101Scf00265g01016.1			Unknown protein		
Niben101Scf05060g00001.1	sp|Q9ZVH4|CUL3A_ARATH	****	Cullin-3A	IPR001373 (Cullin, N-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf06084g01002.1	sp|C1FVJ1|ADD_CLOBJ	****	Adenosine deaminase	IPR001365 (Adenosine/AMP deaminase domain)	GO:0019239 (deaminase activity)
Niben101Scf09869g00008.1			Unknown protein	IPR008637 (HR-like lesion-inducer)	
Niben101Scf01789g02038.1	gb|AFD22621.1|	*-*-	dicer-like 4 protein [Nicotiana attenuata]		
Niben101Scf06087g08004.1	AT1G25270.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=355	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf05044g02009.1	sp|Q55E69|SYS1_DICDI	***-	Protein SYS1 homolog	IPR019185 (Integral membrane protein SYS1-related)	
Niben101Scf00603g03022.1	AT4G00905.1	***-	NC domain-containing protein-related LENGTH=263	IPR007053 (LRAT-like domain)	
Niben101Scf05374g05003.1	sp|Q9M157|ETC3_ARATH	--*-	MYB-like transcription factor ETC3	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01228g02011.1	gb|AES60043.2|	***-	GRF zinc finger protein [Medicago truncatula]		
Niben101Scf11969g00004.1	sp|Q9SF29|SYP71_ARATH	***-	Syntaxin-71	IPR000727 (Target SNARE coiled-coil domain)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane)
Niben101Ctg14738g00001.1	sp|A2YWA6|ZHD2_ORYSI	***-	Zinc-finger homeodomain protein 2	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf07942g04003.1	ref|XP_002522409.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF39901.1| conserved hypothetical protein [Ricinus communis]	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf07229g02002.1	sp|O65896|CDA1_ARATH	****	Cytidine deaminase 1	IPR006263 (Cytidine deaminase, homodimeric)	GO:0003824 (catalytic activity), GO:0004126 (cytidine deaminase activity), GO:0008270 (zinc ion binding), GO:0009972 (cytidine deamination), GO:0016787 (hydrolase activity)
Niben101Scf06537g00009.1	ref|XP_007036529.1|	*-*-	Checkpoint serine/threonine-protein kinase BUB1, putative isoform 2 [Theobroma cacao] gb|EOY21030.1| Checkpoint serine/threonine-protein kinase BUB1, putative isoform 2 [Theobroma cacao]		
Niben101Scf05082g04002.1	sp|Q8L838|COG4_ARATH	****	Conserved oligomeric Golgi complex subunit 4	IPR007528 (RINT-1/TIP-20), IPR009976 (Exocyst complex component Sec10-like), IPR010326 (Exocyst complex component Sec6), IPR013167 (Conserved oligomeric Golgi complex, subunit 4)	GO:0000145 (exocyst), GO:0005737 (cytoplasm), GO:0005783 (endoplasmic reticulum), GO:0006887 (exocytosis), GO:0048193 (Golgi vesicle transport), GO:0048278 (vesicle docking)
Niben101Scf01723g00007.1	sp|Q9SIZ8|RKP_ARATH	***-	E3 ubiquitin-protein ligase RKP	IPR001870 (B30.2/SPRY domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01375g09026.1	ref|WP_025924881.1|	-**-	MULTISPECIES: hypothetical protein [Prochlorococcus]	IPR021489 (Protein of unknown function DUF3143)	
Niben101Scf04044g01033.1	sp|F4J5M9|CLC3_ARATH	*-**	Clathrin light chain 3	IPR000996 (Clathrin light chain)	GO:0005198 (structural molecule activity), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030130 (clathrin coat of trans-Golgi network vesicle), GO:0030132 (clathrin coat of coated pit)
Niben101Scf06912g01017.1	emb|CAZ96176.1|	***-	conserved hypothetical protein [Saccharum hybrid cultivar R570]		
Niben101Scf11153g00002.1	AT1G78930.1	****	Mitochondrial transcription termination factor family protein LENGTH=591	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00133g02003.1	sp|Q54ND5|MINP1_DICDI	****	Multiple inositol polyphosphate phosphatase 1	IPR029033 (Histidine phosphatase superfamily)	GO:0003993 (acid phosphatase activity), GO:0016791 (phosphatase activity)
Niben101Scf04337g01005.1	sp|O80340|ERF78_ARATH	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02793g13014.1	sp|Q55DB6|AHSA_DICDI	****	Activator of 90 kDa heat shock protein ATPase homolog	IPR013538 (Activator of Hsp90 ATPase homologue 1-like), IPR015310 (Activator of Hsp90 ATPase, N-terminal), IPR023393 (START-like domain)	GO:0001671 (ATPase activator activity), GO:0006950 (response to stress), GO:0051087 (chaperone binding)
Niben101Scf08522g02004.1	AT4G16340.1	*-*-	guanyl-nucleotide exchange factors;GTPase binding;GTP binding LENGTH=1830		
Niben101Scf10086g04010.1	AT5G11540.1	****	D-arabinono-1,4-lactone oxidase family protein LENGTH=585	IPR007173 (D-arabinono-1,4-lactone oxidase), IPR010030 (Plant-specific FAD-dependent oxidoreductase), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0003885 (D-arabinono-1,4-lactone oxidase activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05961g02014.1	AT3G25440.1	****	RNA-binding CRS1 / YhbY (CRM) domain protein LENGTH=444	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf04337g00004.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf09774g03004.1	AT2G01760.1	*-*-	response regulator 14 LENGTH=382	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08088g02003.1	sp|O13813|TOM22_SCHPO	--**	Mitochondrial import receptor subunit tom22	IPR005683 (Mitochondrial outer membrane translocase complex, subunit Tom22)	GO:0005741 (mitochondrial outer membrane), GO:0006886 (intracellular protein transport)
Niben101Scf00780g01029.1	sp|Q10S70|EXLA1_ORYSJ	***-	Expansin-like A1	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0019953 (sexual reproduction)
Niben101Scf15467g02002.1	sp|P41878|RPN11_SCHPO	***-	26S proteasome regulatory subunit rpn11	IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain)	GO:0005515 (protein binding)
Niben101Scf02680g02015.1	sp|Q680Q4|SIZ1_ARATH	*-*-	E3 SUMO-protein ligase SIZ1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf01587g01014.1	sp|P06265|NU5C_TOBAC	*-*-	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic		
Niben101Scf20652g01023.1	sp|Q9LQZ5|SRS5_ARATH	***-	Protein SHI RELATED SEQUENCE 5	IPR007818 (Protein of unknown function DUF702)	
Niben101Scf07305g00012.1	AT1G80530.1	***-	Major facilitator superfamily protein LENGTH=561	IPR010658 (Nodulin-like), IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03376g04003.1	sp|Q7ZVV1|ERCC3_DANRE	*-*-	TFIIH basal transcription factor complex helicase XPB subunit	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0016787 (hydrolase activity)
Niben101Scf07508g01001.1	sp|Q9M5Q1|FUT1_PEA	****	Galactoside 2-alpha-L-fucosyltransferase	IPR004938 (Xyloglucan fucosyltransferase)	GO:0008107 (galactoside 2-alpha-L-fucosyltransferase activity), GO:0016020 (membrane), GO:0042546 (cell wall biogenesis)
Niben101Scf00056g06004.1	sp|Q02243|WIN_SOYBN	*-*-	Wound-induced protein	IPR009009 (RlpA-like double-psi beta-barrel domain)	GO:0042742 (defense response to bacterium), GO:0050832 (defense response to fungus)
Niben101Scf00343g08005.1	sp|P45037|CCMF_HAEIN	--**	Cytochrome c-type biogenesis protein CcmF	IPR003569 (Cytochrome c-type biogenesis protein CcbS)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf25265g00009.1	sp|Q54S83|NDUF7_DICDI	*-*-	NADH dehydrogenase [ubiquinone] complex I, assembly factor 7	IPR003788 (Putative S-adenosyl-L-methionine-dependent methyltransferase MidA), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf08465g03014.1	sp|Q9FHQ1|GDL80_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00148g01013.1	sp|O04887|PME2_CITSI	****	Pectinesterase 2	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf02383g00009.1	sp|Q9FFK1|SYP31_ARATH	--*-	Syntaxin-31		
Niben101Scf01742g03002.1			Unknown protein		
Niben101Ctg14514g00003.1	sp|Q5JK68|CDKC2_ORYSJ	****	Cyclin-dependent kinase C-2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00340g03005.1	sp|Q9C689|NSE4A_ARATH	***-	Non-structural maintenance of chromosomes element 4 homolog A	IPR014854 (Non-structural maintenance of chromosome element 4, C-terminal), IPR027786 (Nse4/EID family)	GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0030915 (Smc5-Smc6 complex)
Niben101Scf01409g11002.1	sp|Q99VB5|CLPB_STAAM	*-*-	Chaperone protein ClpB	IPR003959 (ATPase, AAA-type, core), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf04422g17003.1	tpg|DAA52051.1|	***-	TPA: hypothetical protein ZEAMMB73_362192 [Zea mays]		
Niben101Scf01653g00001.1	AT2G37740.1	*-*-	zinc-finger protein 10 LENGTH=304	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf03855g05005.1	gb|ABK54296.1|	--*-	glycine-rich protein [Gossypium hirsutum]		
Niben101Scf01765g03013.1	sp|O64527|Y1926_ARATH	***-	UPF0678 fatty acid-binding protein-like protein	IPR011038 (Calycin-like), IPR014878 (Domain of unknown function DUF1794)	
Niben101Scf00109g10005.1	sp|Q9C7F5|NTF2_ARATH	****	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2)	GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf00502g00012.1	sp|P55956|ASP3_CAEEL	*-**	Aspartic protease 3	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05351g00015.1	sp|Q2HJ10|ZNT2_MOUSE	****	Zinc transporter 2	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf17956g00004.1	sp|Q6QNL9|KC1_EIMTE	*-*-	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08840g00003.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02417g02001.1			Unknown protein		
Niben101Scf20557g00002.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf05711g02003.1	gb|KEH27808.1|	--*-	myb transcription factor [Medicago truncatula]		
Niben101Scf05654g00004.1	sp|A1AVS5|NUON_RUTMC	*-*-	NADH-quinone oxidoreductase subunit N	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf02724g00015.1	AT4G01070.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=480	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf09186g00006.1	gb|ABA42899.1|	--*-	trypsin proteinase inhibitor precursor [Nicotiana tabacum]		
Niben101Scf03735g01005.1	sp|Q7XM13|WOX1A_ORYSJ	*-*-	WUSCHEL-related homeobox 1A	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf11560g00002.1	ref|WP_027650318.1|	***-	amine oxidase [Salinispora pacifica]	IPR001613 (Flavin amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09658g00022.1	sp|Q3UXZ9|KDM5A_MOUSE	*-*-	Lysine-specific demethylase 5A	IPR003347 (JmjC domain), IPR003349 (JmjN domain), IPR003888 (FY-rich, N-terminal), IPR003889 (FY-rich, C-terminal), IPR004198 (Zinc finger, C5HC2-type)	GO:0005634 (nucleus)
Niben101Scf03143g12012.1	ref|NP_001174960.1|	--*-	[Oryza sativa Japonica Group] dbj|BAH93688.1| [Oryza sativa Japonica Group]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf02280g08008.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf13185g02021.1	sp|Q4VCM1|LCAT2_ARATH	*-*-	Phospholipid--sterol O-acyltransferase		
Niben101Scf12415g00018.1	AT1G70810.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=165	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf03930g02026.1	ref|WP_003632393.1|	--*-	universal stress protein [Legionella longbeachae] ref|YP_003454441.1| universal stress family protein [Legionella longbeachae NSW150] gb|EEZ95591.1| universal stress protein family [Legionella longbeachae D-4968] emb|CBJ11306.1| putative universal stress family protein [Legionella longbeachae NSW150]		
Niben101Scf09534g00013.1	ref|XP_002872926.1|	****	zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gb|EFH49185.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)	GO:0008270 (zinc ion binding)
Niben101Scf01642g01015.1	AT3G06350.1	****	dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative LENGTH=603	IPR013708 (Shikimate dehydrogenase substrate binding, N-terminal), IPR013785 (Aldolase-type TIM barrel), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0003855 (3-dehydroquinate dehydratase activity), GO:0004764 (shikimate 3-dehydrogenase (NADP+) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09447g01017.1	sp|Q84WW1|FB140_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00395g02024.1			Unknown protein		
Niben101Scf09708g10001.1	sp|Q1C5T7|HEM6_YERPA	****	Oxygen-dependent coproporphyrinogen-III oxidase	IPR001260 (Coproporphyrinogen III oxidase, aerobic)	GO:0004109 (coproporphyrinogen oxidase activity), GO:0006779 (porphyrin-containing compound biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf08995g00017.1	sp|P46903|NATA_BACSU	*-**	ABC transporter ATP-binding protein NatA	IPR003439 (ABC transporter-like), IPR026082 (ABC transporter A, ABCA), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005215 (transporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity)
Niben101Scf11123g00021.1	AT1G60140.1	****	trehalose phosphate synthase LENGTH=861	IPR001830 (Glycosyl transferase, family 20), IPR006379 (HAD-superfamily hydrolase, subfamily IIB), IPR023214 (HAD-like domain)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process), GO:0008152 (metabolic process)
Niben101Scf00466g04027.1	AT4G38900.1	****	Basic-leucine zipper (bZIP) transcription factor family protein LENGTH=553	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09604g01008.1			Unknown protein		
Niben101Scf05516g02015.1	AT1G58470.1	*-**	RNA-binding protein 1 LENGTH=360	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf03748g00006.1	sp|Q46909|YGCS_ECOLI	*-**	Inner membrane metabolite transport protein YgcS	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00414g11005.1	sp|B7MCQ4|RSMB_ECO45	****	Ribosomal RNA small subunit methyltransferase B	IPR023267 (RNA (C5-cytosine) methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0006364 (rRNA processing), GO:0008168 (methyltransferase activity), GO:0008649 (rRNA methyltransferase activity)
Niben101Scf06326g00031.1			Unknown protein		
Niben101Scf04398g06011.1	sp|Q6AWY6|GRF3_ORYSJ	*-*-	Growth-regulating factor 3	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf10434g00028.1	sp|P41098|RL34_TOBAC	***-	60S ribosomal protein L34	IPR008195 (Ribosomal protein L34Ae)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02594g00002.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf15109g00006.1	sp|Q7RBX5|KC1_PLAYO	****	Casein kinase I	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf14634g00001.1	sp|Q9M175|PTR39_ARATH	*-*-	Protein NRT1/ PTR FAMILY 2.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00163g01009.1	sp|P29057|HMDH1_HEVBR	****	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	IPR002202 (Hydroxymethylglutaryl-CoA reductase, class I/II), IPR023074 (Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain), IPR023282 (Hydroxymethylglutaryl-CoA reductase, N-terminal)	GO:0004420 (hydroxymethylglutaryl-CoA reductase (NADPH) activity), GO:0008299 (isoprenoid biosynthetic process), GO:0015936 (coenzyme A metabolic process), GO:0016021 (integral component of membrane), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050661 (NADP binding), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03693g02001.1	AT3G50660.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02361g01002.1	sp|P54873|HMCS_ARATH	****	Hydroxymethylglutaryl-CoA synthase	IPR010122 (Hydroxymethylglutaryl-CoA synthase, eukaryotic)	GO:0003824 (catalytic activity), GO:0004421 (hydroxymethylglutaryl-CoA synthase activity), GO:0008152 (metabolic process), GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf02636g08001.1	sp|Q84W80|FBL42_ARATH	--*-	F-box/LRR-repeat protein		
Niben101Scf33739g00001.1	sp|Q9LK50|AB26G_ARATH	*-*-	ABC transporter G family member 26		
Niben101Scf07261g00003.1	sp|P35402|ERD2A_ARATH	****	ER lumen protein-retaining receptor A	IPR000133 (ER lumen protein retaining receptor)	GO:0006621 (protein retention in ER lumen), GO:0016021 (integral component of membrane), GO:0046923 (ER retention sequence binding)
Niben101Scf06504g01012.1	AT5G42050.1	***-	DCD (Development and Cell Death) domain protein LENGTH=349	IPR013989 (Development/cell death domain)	
Niben101Scf01555g01008.1	sp|Q4P827|EAF3_USTMA	***-	Chromatin modification-related protein EAF3	IPR008676 (MRG), IPR016197 (Chromo domain-like), IPR026541 (MRG domain)	GO:0005634 (nucleus)
Niben101Scf04862g00008.1	sp|B1ZLG6|AROA_METPB	--*-	3-phosphoshikimate 1-carboxyvinyltransferase		
Niben101Scf05382g00001.1	AT2G27820.1	****	prephenate dehydratase 1 LENGTH=424	IPR001086 (Prephenate dehydratase), IPR002912 (ACT domain)	GO:0004664 (prephenate dehydratase activity), GO:0008152 (metabolic process), GO:0009094 (L-phenylalanine biosynthetic process), GO:0016597 (amino acid binding)
Niben101Scf04529g00012.1	sp|P48188|PSBK_MAIZE	****	Photosystem II reaction center protein K	IPR003686 (Photosystem II PsbI), IPR003687 (Photosystem II PsbK)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0015979 (photosynthesis), GO:0016020 (membrane)
Niben101Scf02264g00008.1	ref|XP_002513686.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF49089.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf10970g00022.1	ref|XP_002526491.1|	*-*-	pentatricopeptide repeat-containing protein, putative [Ricinus communis] gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]		
Niben101Scf13764g00003.1	emb|CDY03722.1|	***-	BnaA02g15150D [Brassica napus]	IPR019308 (Protein of unknown function DUF2359, TMEM214)	
Niben101Scf01143g02025.1	sp|Q9FZ80|SOT17_ARATH	*-**	Cytosolic sulfotransferase 17	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf02437g06011.1	sp|P13853|HS17C_ARATH	***-	17.6 kDa class I heat shock protein 3	IPR008978 (HSP20-like chaperone)	
Niben101Scf05002g00007.1	sp|O94889|KLH18_HUMAN	*-*-	Kelch-like protein 18	IPR015916 (Galactose oxidase, beta-propeller)	GO:0005515 (protein binding)
Niben101Ctg02893g00002.1	sp|P77966|GYRB_SYNY3	*-**	DNA gyrase subunit B	IPR001241 (DNA topoisomerase, type IIA)	GO:0003677 (DNA binding), GO:0003918 (DNA topoisomerase type II (ATP-hydrolyzing) activity), GO:0005524 (ATP binding), GO:0006265 (DNA topological change)
Niben101Scf03801g02009.1	AT2G39805.2	*-*-	Integral membrane Yip1 family protein LENGTH=276		
Niben101Scf00420g05009.1	sp|O04161|AMT12_SOLLC	****	Ammonium transporter 1 member 2	IPR001905 (Ammonium transporter), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf06662g02021.1	AT5G47470.1	*-**	Nodulin MtN21 /EamA-like transporter family protein LENGTH=364	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf03775g00001.1	sp|Q01971|RAB2A_RABIT	***-	Ras-related protein Rab-2A	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf08683g00011.1	gb|KEH37043.1|	--**	plant invertase/pectin methylesterase inhibitor [Medicago truncatula]	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf03368g01013.1	sp|Q8LAD7|IDA_ARATH	--*-	Protein IDA		
Niben101Scf06987g01001.1	emb|CDX87797.1|	***-	BnaC02g31520D [Brassica napus]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf06326g00033.1	sp|Q9SDZ9|PPAF2_IPOBA	*-**	Purple acid phosphatase 2	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0046872 (metal ion binding)
Niben101Scf00130g05009.1	sp|P12612|TCPA_YEAST	*-*-	T-complex protein 1 subunit alpha	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf01887g08023.1	AT4G11800.1	***-	Calcineurin-like metallo-phosphoesterase superfamily protein LENGTH=1013	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf00203g00003.1	sp|B1ZG98|RLMN_METPB	****	Dual-specificity RNA methyltransferase RlmN	IPR004383 (Ribosomal RNA large subunit methyltransferase RlmN/Cfr), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0006364 (rRNA processing), GO:0008173 (RNA methyltransferase activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf06684g05006.1			Unknown protein		
Niben101Scf00163g22004.1	sp|Q40478|ERF5_TOBAC	****	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04953g07001.1	sp|Q42580|PER21_ARATH	****	Peroxidase 21	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06200g03035.1	gb|AAY43793.1|	--*-	E6-4 [Gossypium hirsutum]		
Niben101Scf03266g02001.1	ref|XP_010113219.1|	--*-	S-type anion channel SLAH3 [Morus notabilis] gb|EXC74644.1| S-type anion channel SLAH3 [Morus notabilis]		
Niben101Scf03830g00007.1			Unknown protein		
Niben101Scf12270g00014.1	sp|P0DI50|CASP1_TOBAC	***-	Casparian strip membrane protein 1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf07284g02001.1	AT2G27480.1	****	Calcium-binding EF-hand family protein LENGTH=228	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02353g00001.1	AT3G48660.1	***-	Protein of unknown function (DUF 3339) LENGTH=89	IPR021775 (Protein of unknown function DUF3339)	
Niben101Scf02257g01007.1	sp|B2FMY6|DNAJ_STRMK	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR017896 (4Fe-4S ferredoxin-type, iron-sulphur binding domain)	GO:0051536 (iron-sulfur cluster binding)
Niben101Scf03930g02024.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf00537g02018.1	AT3G07440.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=235		
Niben101Scf00774g01027.1	sp|Q9LVN0|GPDL7_ARATH	****	Glycerophosphodiester phosphodiesterase GDPDL7	IPR004129 (Glycerophosphoryl diester phosphodiesterase)	GO:0006071 (glycerol metabolic process), GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity), GO:0008889 (glycerophosphodiester phosphodiesterase activity)
Niben101Scf10442g00012.1	sp|A4J657|NUOD_DESRM	*-**	NADH-quinone oxidoreductase subunit D	IPR014029 (NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site), IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09445g04026.1	sp|A4IFD8|MET14_BOVIN	*-**	N6-adenosine-methyltransferase subunit METTL14	IPR007757 (MT-A70-like), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006139 (nucleobase-containing compound metabolic process), GO:0008168 (methyltransferase activity)
Niben101Ctg00607g00001.1	sp|Q9C866|PPR65_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08954g01004.1	sp|P56331|IF1A_ONOVI	****	Eukaryotic translation initiation factor 1A	IPR001253 (Translation initiation factor 1A (eIF-1A))	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0006413 (translational initiation)
Niben101Scf06778g06010.1			Unknown protein		
Niben101Scf09368g04005.1	sp|Q566M8|RN150_DANRE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf11105g00009.1			Unknown protein		
Niben101Scf05431g01014.1	AT5G65840.1	***-	Thioredoxin superfamily protein LENGTH=275		
Niben101Scf06909g01006.1	ref|XP_002528691.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF33680.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf09929g00005.1			Unknown protein		
Niben101Scf08706g02020.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004842 (ubiquitin-protein transferase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016567 (protein ubiquitination), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03534g01011.1	sp|O59299|RS9_PYRHO	***-	30S ribosomal protein S9	IPR000754 (Ribosomal protein S9), IPR020568 (Ribosomal protein S5 domain 2-type fold)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02275g03014.1	sp|P58694|SYN_ECO57	*-**	Asparagine--tRNA ligase	IPR004364 (Aminoacyl-tRNA synthetase, class II (D/K/N)), IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation)
Niben101Scf06790g00019.1	sp|Q9FMP8|RGAP6_ARATH	*-*-	Rho GTPase-activating protein 6	IPR008936 (Rho GTPase activation protein)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf00073g00008.1	sp|P53016|RFC4_CAEEL	*-**	Replication factor C subunit 4	IPR012763 (DNA polymerase III, subunit gamma/ tau), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0005524 (ATP binding), GO:0006260 (DNA replication), GO:0009360 (DNA polymerase III complex)
Niben101Scf00472g05015.1	emb|CDY41498.1|	***-	BnaA08g21000D [Brassica napus]		
Niben101Ctg14086g00004.1	AT4G13850.1	*-**	glycine-rich RNA-binding protein 2 LENGTH=158	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf09883g01006.1	sp|Q9XES5|DFRA_MALDO	***-	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf01374g15012.1	sp|P27061|PPA1_SOLLC	****	Acid phosphatase 1	IPR005519 (Acid phosphatase (Class B)), IPR023214 (HAD-like domain)	GO:0003993 (acid phosphatase activity)
Niben101Scf25866g00015.1	sp|Q9FMK7|BT1_ARATH	***-	BTB/POZ and TAZ domain-containing protein 1	IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf07305g00010.1			Unknown protein		
Niben101Scf12089g00028.1	sp|Q9UKX7|NUP50_HUMAN	*-*-	Nuclear pore complex protein Nup50	IPR011993 (Pleckstrin homology-like domain)	GO:0046907 (intracellular transport)
Niben101Scf05387g08001.1	sp|Q5PP70|NTM1_ARATH	*-*-	Alpha N-terminal protein methyltransferase 1		
Niben101Scf20961g00015.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf03215g02007.1	ref|XP_002525250.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37216.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06085g01010.1	sp|O81263|KITH_ORYSJ	*-**	Thymidine kinase	IPR001267 (Thymidine kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004797 (thymidine kinase activity), GO:0005524 (ATP binding)
Niben101Scf04114g02045.1			Unknown protein		
Niben101Scf00831g02018.1	AT1G03070.1	***-	Bax inhibitor-1 family protein LENGTH=247	IPR006214 (Bax inhibitor 1-related)	
Niben101Scf03099g05007.1	sp|Q93VR4|ML423_ARATH	***-	MLP-like protein 423	IPR000916 (Bet v I domain), IPR023393 (START-like domain), IPR024949 (Bet v I type allergen)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf06691g00004.1	AT2G01150.1	***-	RING-H2 finger protein 2B LENGTH=147		
Niben101Scf02074g01046.1			Unknown protein		
Niben101Scf01139g03005.1	AT1G72210.1	***-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=320	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04077g02007.1	ref|NP_001279466.1|	***-	splicing factor 3b, subunit 6, 14kDa [Callorhinchus milii] gb|AFK11161.1| pre-mRNA branch site protein p14 [Callorhinchus milii]	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf08230g00017.1	AT5G04830.1	***-	Nuclear transport factor 2 (NTF2) family protein LENGTH=178	IPR018790 (Protein of unknown function DUF2358)	
Niben101Scf08304g06009.1	gb|KEH44548.1|	*-*-	pollen protein Ole E I-like protein [Medicago truncatula]	IPR006041 (Pollen Ole e 1 allergen/extensin), IPR006706 (Extensin domain)	GO:0005199 (structural constituent of cell wall), GO:0009664 (plant-type cell wall organization)
Niben101Scf03045g03003.1	sp|P52839|SOT12_ARATH	****	Cytosolic sulfotransferase 12	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf05805g04001.1	sp|O24554|PLY_ZINVI	*-*-	Pectate lyase	IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	
Niben101Scf06850g00007.1	ref|XP_002524585.1|	-***	nucleic acid binding protein, putative [Ricinus communis] gb|EEF37793.1| nucleic acid binding protein, putative [Ricinus communis]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf02793g13016.1	AT4G37790.1	*-*-	Homeobox-leucine zipper protein family LENGTH=278	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf35617g00007.1	sp|Q07442|BDF2_YEAST	--*-	Bromodomain-containing factor 2	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf03012g03020.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR003137 (Protease-associated domain, PA), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03427g00008.1	sp|Q8L627|SRD2_ARATH	*-*-	snRNA-activating protein complex subunit	IPR000644 (CBS domain), IPR022042 (snRNA-activating protein complex, subunit 3)	
Niben101Scf05720g06001.1	sp|Q9D7H2|WDR5B_MOUSE	*-*-	WD repeat-containing protein 5B	IPR006594 (LisH dimerisation motif), IPR006595 (CTLH, C-terminal LisH motif), IPR015943 (WD40/YVTN repeat-like-containing domain), IPR027728 (Topless family)	GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02245g02008.1	AT1G22990.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=152	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf00439g06003.1	ref|NP_001043414.2|	*-*-	[Oryza sativa Japonica Group] dbj|BAF05328.2| [Oryza sativa Japonica Group]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf01375g09028.1	ref|NP_568790.1|	***-	ubiquitin-associated/translation elongation factor EF1B protein [Arabidopsis thaliana] gb|AAM61092.1| proline-rich cell wall protein-like [Arabidopsis thaliana] gb|AED96340.1| ubiquitin-associated/translation elongation factor EF1B protein [Arabidopsis thaliana]	IPR009060 (UBA-like), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote)	GO:0005515 (protein binding)
Niben101Ctg07960g00001.1	sp|Q94JM3|ARFB_ARATH	*-**	Auxin response factor 2	IPR010525 (Auxin response factor)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone)
Niben101Scf06154g03013.1	sp|Q2GHX3|ATPA_EHRCR	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR008543 (Uncharacterised protein family Ycf2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf05201g03003.1	sp|B0Y384|GMT_ASPFC	***-	GDP-mannose transporter		
Niben101Scf09516g00019.1	ref|WP_002974003.1|	***-	PF07386 family protein [Lept [Leptospira terpstrae serovar Hualin str. LT 11-33 = ATCC 700639]	IPR010865 (Protein of unknown function DUF1499)	
Niben101Scf02063g05001.1	sp|Q8LDC8|ERF92_ARATH	****	Ethylene-responsive transcription factor 1B	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf07024g00009.1	AT3G59920.1	****	RAB GDP dissociation inhibitor 2 LENGTH=444	IPR018203 (GDP dissociation inhibitor)	GO:0005093 (Rab GDP-dissociation inhibitor activity), GO:0015031 (protein transport)
Niben101Scf01521g10001.1			Unknown protein		
Niben101Scf02164g05011.1	sp|A8W3C0|PSBC_CUSEX	*-*-	Photosystem II CP43 reaction center protein		
Niben101Scf09432g00008.1	sp|Q9C912|R35A3_ARATH	***-	60S ribosomal protein L35a-3	IPR001780 (Ribosomal protein L35A), IPR009000 (Translation protein, beta-barrel domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02613g02007.1	sp|Q9ATF5|RL18A_CASSA	***-	60S ribosomal protein L18a	IPR023573 (Ribosomal protein L18a/LX), IPR028877 (50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01150g01014.1	sp|P10984|ACT2_CAEEL	***-	Actin-2	IPR004000 (Actin family)	
Niben101Scf03903g02005.1	sp|O23337|PP311_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02786g01025.1	ref|XP_002519967.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF42415.1| conserved hypothetical protein [Ricinus communis]		
Niben101Ctg16102g00003.1	AT5G13150.1	*-**	exocyst subunit exo70 family protein C1 LENGTH=653	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf02646g03013.1	ref|XP_003619837.1|	--*-	Down syndrome critical region protein-like protein [Medicago truncatula]		
Niben101Scf21574g00011.1	sp|Q9SDZ9|PPAF2_IPOBA	****	Purple acid phosphatase 2	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf05721g00004.1	AT1G01020.1	*-*-	Arv1-like protein LENGTH=245	IPR007290 (Arv1 protein)	
Niben101Scf08526g02007.1	gb|AES75256.2|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf13206g02017.1	AT3G61200.1	*-*-	Thioesterase superfamily protein LENGTH=188	IPR029069 (HotDog domain)	
Niben101Scf08987g00006.1	AT5G11160.1	****	adenine phosphoribosyltransferase 5 LENGTH=191	IPR005764 (Adenine phosphoribosyl transferase), IPR029057 (Phosphoribosyltransferase-like)	GO:0003999 (adenine phosphoribosyltransferase activity), GO:0005737 (cytoplasm), GO:0006168 (adenine salvage), GO:0009116 (nucleoside metabolic process)
Niben101Scf00712g01011.1	AT1G20870.1	*-*-	HSP20-like chaperones superfamily protein LENGTH=463	IPR008978 (HSP20-like chaperone)	
Niben101Scf05688g05004.1	emb|CDX81765.1|	***-	BnaC08g38360D [Brassica napus]		
Niben101Scf01834g04021.1	AT3G11500.1	***-	Small nuclear ribonucleoprotein family protein LENGTH=79	IPR010920 (Like-Sm (LSM) domain)	
Niben101Scf15885g00029.1	sp|B1JVN8|NUOD_BURCC	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04292g11001.1	sp|Q3UHJ8|RNF44_MOUSE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04003g04003.1	sp|Q55G10|PNCB_DICDI	****	Nicotinate phosphoribosyltransferase	IPR002638 (Quinolinate phosphoribosyl transferase, C-terminal), IPR007229 (Nicotinate phosphoribosyltransferase family)	GO:0004514 (nicotinate-nucleotide diphosphorylase (carboxylating) activity), GO:0004516 (nicotinate phosphoribosyltransferase activity), GO:0009435 (NAD biosynthetic process), GO:0019358 (nicotinate nucleotide salvage)
Niben101Scf21735g00006.1	AT5G53140.1	****	Protein phosphatase 2C family protein LENGTH=420	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf00953g02003.1	sp|Q9ZQR5|TBL13_ARATH	*-*-	Protein trichome birefringence-like 13	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf08441g00015.1			Unknown protein		
Niben101Scf07764g00003.1	sp|P60039|RL73_ARATH	***-	60S ribosomal protein L7-3	IPR016082 (Ribosomal protein L30, ferredoxin-like fold domain)	
Niben101Scf04316g06010.1	ref|XP_002532100.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF30290.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05680g00024.1	sp|Q9ZW24|GSTU7_ARATH	***-	Glutathione S-transferase U7	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf08675g00002.1	sp|O82345|BAG6_ARATH	*-**	BAG family molecular chaperone regulator 6	IPR000048 (IQ motif, EF-hand binding site), IPR003103 (BAG domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf03507g05002.1	AT1G16870.1	*-*-	mitochondrial 28S ribosomal protein S29-related LENGTH=480	IPR019368 (Ribosomal protein S23/S29, mitochondrial), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf02354g12006.1	sp|Q9S7G7|MB3R1_ARATH	***-	Myb-related protein 3R-1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01313g06023.1	ref|XP_003588677.1|	--*-	F-box/FBD/LRR-repeat protein [Medicago truncatula]	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00073g06001.1	sp|B8ZRF0|ARC_MYCLB	*-*-	Proteasome-associated ATPase	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029067 (CDC48 domain 2-like)	GO:0005524 (ATP binding)
Niben101Scf03953g06016.1	sp|Q9XEE9|ALG11_ARATH	***-	GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf02081g01009.1	ref|XP_002513285.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF48688.1| conserved hypothetical protein [Ricinus communis]	IPR021641 (Protein of unknown function DUF3245)	
Niben101Scf07304g04003.1	sp|Q8VWJ1|HPT1_ARATH	*-*-	Homogentisate phytyltransferase 1, chloroplastic		
Niben101Scf10162g01004.1	sp|Q9FEQ8|PER2_MAIZE	****	Peroxidase 2	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03865g00006.1	sp|Q54UK0|PLDA_DICDI	*-**	Phospholipase D A	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0004630 (phospholipase D activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0046470 (phosphatidylcholine metabolic process)
Niben101Scf00168g08008.1	sp|P14030|RL6_METVA	***-	50S ribosomal protein L6	IPR000702 (Ribosomal protein L6)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf12848g00006.1	sp|P57722|PCBP3_MOUSE	****	Poly(rC)-binding protein 3	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf04398g03005.1	sp|Q3T130|TM45B_BOVIN	***-	Transmembrane protein 45B	IPR006904 (Protein of unknown function DUF716 (TMEM45))	
Niben101Scf06203g05020.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Ctg13180g00001.1	emb|CDY03452.1|	--*-	BnaC01g16300D [Brassica napus]		
Niben101Scf06221g04025.1	AT2G07749.1	***-	Mitovirus RNA-dependent RNA polymerase LENGTH=246	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf01035g05012.1	sp|Q9M2Z4|MSBP2_ARATH	****	Membrane steroid-binding protein 2	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf03202g03002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03097g01009.1	AT2G01220.2	*-*-	Nucleotidylyl transferase superfamily protein LENGTH=388	IPR008136 (CinA, C-terminal)	
Niben101Scf03693g03009.1	sp|Q42404|RU17_ARATH	*-*-	U1 small nuclear ribonucleoprotein 70 kDa	IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR022023 (U1 small nuclear ribonucleoprotein of 70kDa N-terminal)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf08576g01004.1	sp|Q9C5X8|MOCOS_ARATH	*-*-	Molybdenum cofactor sulfurase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Ctg01655g00001.1	gb|KEH41922.1|	*-*-	exocyst subunit exo70 family protein [Medicago truncatula]	IPR016159 (Cullin repeat-like-containing domain)	
Niben101Scf03757g06018.1	ref|NP_001148709.1|	***-	expp1 protein precursor [Zea mays] gb|ACG32616.1| expp1 protein precursor [Zea mays]		
Niben101Scf02864g02010.1			Unknown protein	IPR000167 (Dehydrin)	GO:0006950 (response to stress), GO:0009415 (response to water)
Niben101Scf11922g00018.1	sp|Q9SL03|CALS2_ARATH	*-**	Callose synthase 2	IPR023175 (Vacuolar protein sorting-associate protein Vta1/Callose synthase, N-terminal domain), IPR026899 (1,3-beta-glucan synthase subunit FKS1-like, domain-1), IPR026953 (Callose synthase)	GO:0003843 (1,3-beta-D-glucan synthase activity)
Niben101Scf08702g00002.1	sp|Q0WPE9|NAT7_ARATH	*-**	Nucleobase-ascorbate transporter 7	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01773g02011.1	AT3G62260.2	****	Protein phosphatase 2C family protein LENGTH=384	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf03875g00008.1	AT2G03350.1	***-	Protein of unknown function, DUF538 LENGTH=179	IPR007493 (Protein of unknown function DUF538)	
Niben101Scf07580g07010.1	AT2G38610.1	****	RNA-binding KH domain-containing protein LENGTH=286	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf07339g01001.1	sp|Q93VH2|BBD2_ARATH	*-**	Bifunctional nuclease 2	IPR003729 (Bifunctional nuclease domain)	GO:0004518 (nuclease activity)
Niben101Scf09871g00006.1	AT1G09380.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=374	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf01115g01007.1	sp|P48768|NAC2_RAT	*-*-	Sodium/calcium exchanger 2	IPR004837 (Sodium/calcium exchanger membrane region)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00773g11002.1	sp|F4IH21|TBL33_ARATH	***-	Protein trichome birefringence-like 33	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf06916g01024.1	AT3G51390.1	*-*-	DHHC-type zinc finger family protein LENGTH=340		
Niben101Scf00894g02003.1	ref|XP_003614638.1|	***-	Monoglyceride lipase [Medicago truncatula] gb|AES97596.1| alpha/beta-hydrolase superfamily protein [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00890g01029.1			Unknown protein		
Niben101Scf01196g00014.1	sp|E2RBS6|SETD3_CANFA	*-*-	Histone-lysine N-methyltransferase setd3	IPR001214 (SET domain), IPR015353 (Rubisco LSMT, substrate-binding domain)	GO:0005515 (protein binding)
Niben101Scf05548g02001.1			Unknown protein		
Niben101Scf05813g09004.1	sp|B8AQW7|PLP1_ORYSI	***-	Patatin-like protein 1	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf00854g08069.1	ref|XP_002536345.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF26037.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01072g03004.1	AT5G15500.2	***-	Ankyrin repeat family protein LENGTH=457	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf00885g05004.1	sp|Q9FNK5|FB285_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02621g05003.1	gb|KGG36516.1|	*-**	Nickel transporter UreH [Prochlorococcus sp. MIT 0703]	IPR011541 (Nickel/cobalt transporter, high-affinity)	GO:0015099 (nickel cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0035444 (nickel cation transmembrane transport), GO:0046872 (metal ion binding)
Niben101Scf02551g01006.1	sp|Q9BYT3|STK33_HUMAN	*-**	Serine/threonine-protein kinase 33	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02572g03008.1	sp|Q944I4|GLYK_ARATH	***-	D-glycerate 3-kinase, chloroplastic	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf16132g00002.1	AT1G08720.1	****	Protein kinase superfamily protein LENGTH=933	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06087g12013.1	sp|Q5Q0H2|FLA19_ARATH	*-*-	Fasciclin-like arabinogalactan protein 19	IPR000782 (FAS1 domain)	
Niben101Scf02309g01008.1	gb|AFV66580.1|	*-*-	LSG [Saccharum hybrid cultivar]		
Niben101Scf00893g01035.1	AT2G39210.1	***-	Major facilitator superfamily protein LENGTH=601	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf07827g00019.1	sp|Q5F3K0|TTC27_CHICK	*-*-	Tetratricopeptide repeat protein 27		
Niben101Scf11531g00002.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02340g02009.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00803g01012.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04375g08009.1	sp|Q94757|TCPA_SCHMA	--*-	T-complex protein 1 subunit alpha	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf02750g04023.1	sp|Q8RX28|HDA5_ARATH	*-*-	Histone deacetylase 5	IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain)	
Niben101Scf15604g00022.1	sp|Q9ZVQ3|GSTZ1_ARATH	***-	Glutathione S-transferase Z1	IPR005955 (Maleylacetoacetate isomerase), IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0003824 (catalytic activity), GO:0005515 (protein binding), GO:0005737 (cytoplasm), GO:0009072 (aromatic amino acid family metabolic process)
Niben101Scf04316g04001.1	AT1G30040.1	*-*-	gibberellin 2-oxidase LENGTH=341	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03321g04008.1	AT2G31820.1	***-	Ankyrin repeat family protein LENGTH=662	IPR020683 (Ankyrin repeat-containing domain), IPR026961 (PGG domain)	GO:0005515 (protein binding)
Niben101Scf06649g02006.1	sp|Q8L202|ENO_BARHE	--*-	Enolase		
Niben101Scf01171g03013.1	sp|Q9SL02|RAD50_ARATH	*-*-	DNA repair protein RAD50		
Niben101Scf07058g02007.1	sp|Q15800|MSMO1_HUMAN	*-*-	Methylsterol monooxygenase 1	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00051g00012.1	sp|P0C5B2|MAD56_ORYSJ	--*-	MADS-box transcription factor 56		
Niben101Scf01281g08006.1	sp|A5DL80|DBP2_PICGU	*-**	ATP-dependent RNA helicase DBP2	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01580g02004.1	sp|F4IME2|MSL8_ARATH	***-	Mechanosensitive ion channel protein 8	IPR006685 (Mechanosensitive ion channel MscS)	GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf07061g00004.1	sp|Q96NW7|LRRC7_HUMAN	--*-	Leucine-rich repeat-containing protein 7	IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0043531 (ADP binding)
Niben101Scf10241g00003.1	AT2G28120.1	***-	Major facilitator superfamily protein LENGTH=577	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf12205g04003.1	AT4G25300.1	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=356	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf02085g14002.1	ref|NP_001275055.1|	*-*-	beta-fructofuranosidase, insoluble isoenzyme 1-like [Solanum tuberosum] gb|AEV46310.1| apoplastic invertase [Solanum tuberosum]	IPR013189 (Glycosyl hydrolase family 32, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	
Niben101Scf05554g09013.1	AT1G75710.1	***-	C2H2-like zinc finger protein LENGTH=462	IPR007087 (Zinc finger, C2H2), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain)	GO:0003950 (NAD+ ADP-ribosyltransferase activity), GO:0046872 (metal ion binding)
Niben101Scf08195g02002.1	sp|A9BHD3|FTSH2_PETMO	--*-	ATP-dependent zinc metalloprotease FtsH 2	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf01221g16001.1	sp|Q3E6Q1|PPR32_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07383g00008.1	gb|ADK71021.1|	*-*-	gibberellin 3-beta-hydroxylase [Trigonella sp. TU 33879]	IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf00712g09036.1	sp|Q9JI10|STK3_MOUSE	*-**	Serine/threonine-protein kinase 3	IPR006567 (PUG domain), IPR010513 (KEN domain), IPR011009 (Protein kinase-like domain), IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily)	GO:0004540 (ribonuclease activity), GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006397 (mRNA processing), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02001g02016.1	sp|P01122|RHO_APLCA	****	Ras-like GTP-binding protein RHO	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf00024g00010.1	sp|Q3HXY0|NGFV1_HOPST	--*-	Venom nerve growth factor 1		
Niben101Scf00821g14009.1	AT5G23370.1	*-*-	GRAM domain-containing protein / ABA-responsive protein-related LENGTH=219	IPR004182 (GRAM domain)	
Niben101Scf02979g00004.1	sp|Q498C5|ABRAL_XENLA	***-	Costars family protein ABRACL	IPR027817 (Costars domain)	
Niben101Scf00960g03016.1	sp|Q45552|DNAJ_GEOSE	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf33827g00004.1	ref|WP_020779708.1|	***-	flavoprotein family protein [Lept [Leptospira kirschneri str. JB]	IPR004792 (Conserved hypothetical protein CHP00275, flavoprotein HI0933-like), IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase)	GO:0055114 (oxidation-reduction process)
Niben101Scf03432g01017.1	sp|Q2QLY4|METE2_ORYSJ	*-*-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2		
Niben101Scf07070g02006.1	AT3G28050.1	*-**	nodulin MtN21 /EamA-like transporter family protein LENGTH=367	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf05217g01002.1	sp|P06511|PSAA_SPIOL	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf04754g03024.1	gb|ACN57081.1|	--*-	At1g06530-like protein [Capsella grandiflora]		
Niben101Scf02074g01004.1	ref|WP_006588044.1|	--*-	permease [Lactobacillus jensenii] gb|EEQ24559.1| hypothetical protein LACJE0001_1464 [Lactobacillus jensenii 269-3]		
Niben101Scf05030g02012.1	gb|AAP54551.2|	--*-	expressed protein [Oryza sativa Japonica Group] dbj|BAG95974.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEC67286.1| hypothetical protein OsJ_32111 [Oryza sativa Japonica Group]		
Niben101Scf13141g01002.1	sp|Q6ZV65|FA47E_HUMAN	--*-	Protein FAM47E		
Niben101Scf01942g01010.1	gb|AIL30486.1|	*-*-	ripening regulated protein DDTFR8 [Nicotiana tabacum]		
Niben101Scf02929g02035.1	gb|ACI02101.1|	*-*-	NADH dehydrogenase subunit 2 (mitochondrion) [Isoetes engelmannii]		
Niben101Scf07809g00010.1	sp|Q03461|NLTP2_TOBAC	****	Non-specific lipid-transfer protein 2	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf03341g00011.1	sp|P31687|4CL2_SOYBN	*-*-	4-coumarate--CoA ligase 2	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00646g06012.1	sp|Q75HX5|TLP8_ORYSJ	***-	Tubby-like F-box protein 8	IPR001810 (F-box domain), IPR025659 (Tubby C-terminal-like domain)	GO:0005515 (protein binding)
Niben101Scf03628g04006.1	sp|Q41060|SBP65_PEA	*-*-	Seed biotin-containing protein SBP65	IPR004238 (Late embryogenesis abundant protein, LEA-3)	
Niben101Scf07466g03004.1	AT3G59920.1	*-*-	RAB GDP dissociation inhibitor 2 LENGTH=444	IPR018203 (GDP dissociation inhibitor)	
Niben101Scf00576g01002.1	sp|Q9FLS0|FB253_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf01514g03005.1	sp|Q5E9P6|BSCL2_BOVIN	--*-	Seipin	IPR009617 (Adipose-regulatory protein, Seipin)	
Niben101Scf17626g00009.1	emb|CDX92307.1|	***-	BnaA05g21000D [Brassica napus]		
Niben101Scf02513g03002.1	AT4G09530.1	***-	SAUR-like auxin-responsive protein family LENGTH=103	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf07778g02006.1	AT3G52880.2	****	monodehydroascorbate reductase 1 LENGTH=466	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR016156 (FAD/NAD-linked reductase, dimerisation domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0016491 (oxidoreductase activity), GO:0045454 (cell redox homeostasis), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03479g05036.1			Unknown protein		
Niben101Scf39447g00002.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf12280g00002.1	sp|B2UJ81|METE_RALPJ	****	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	IPR006276 (Cobalamin-independent methionine synthase)	GO:0003871 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity), GO:0008270 (zinc ion binding), GO:0008652 (cellular amino acid biosynthetic process), GO:0009086 (methionine biosynthetic process)
Niben101Scf04754g01002.1	sp|Q682H0|HA22F_ARATH	***-	HVA22-like protein f	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf01091g00012.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf05818g00017.1	sp|A4K9Z8|PROF2_BETPN	***-	Profilin-2	IPR005455 (Profilin), IPR027310 (Profilin conserved site)	GO:0003779 (actin binding)
Niben101Scf02459g00018.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07103g01028.1	sp|Q9BBR5|PSBE_LOTJA	***-	Cytochrome b559 subunit alpha	IPR013082 (Photosystem II cytochrome b559, alpha subunit, lumenal region)	GO:0009523 (photosystem II), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf02387g01002.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf03385g06008.1	sp|O97159|CHDM_DROME	--**	Chromodomain-helicase-DNA-binding protein Mi-2 homolog	IPR009057 (Homeodomain-like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00595g02025.1	sp|Q8LF97|ASK21_ARATH	***-	SKP1-like protein 21	IPR001232 (S-phase kinase-associated protein 1-like), IPR011333 (BTB/POZ fold), IPR016072 (SKP1 component, dimerisation)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf08526g04006.1	sp|P13853|HS17C_ARATH	***-	17.6 kDa class I heat shock protein 3	IPR008978 (HSP20-like chaperone)	
Niben101Scf07234g00010.1	ref|XP_002513802.1|	*-*-	androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] gb|EEF48385.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis]		
Niben101Scf12481g01004.1	AT4G24400.1	****	CBL-interacting protein kinase 8 LENGTH=445	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00258g02004.1	sp|Q7K0P4|PGAP3_DROME	***-	Post-GPI attachment to proteins factor 3	IPR007217 (Per1-like)	
Niben101Scf06396g00012.1	sp|Q5ZJL8|ABHDD_CHICK	*-*-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03332g00002.1	AT1G33110.1	***-	MATE efflux family protein LENGTH=494	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf07638g01001.1	sp|Q112Z3|ATPX_TRIEI	*-**	ATP synthase subunit b'	IPR002146 (ATPase, F0 complex, subunit B/B', bacterial/chloroplast)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf15538g00004.1	AT2G19170.1	****	subtilisin-like serine protease 3 LENGTH=815	IPR010435 (Peptidase S8A, DUF1034 C-terminal), IPR015500 (Peptidase S8, subtilisin-related), IPR023827 (Peptidase S8, subtilisin,  Asp-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0005618 (cell wall), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf01241g08005.1	sp|A6NHJ4|ZN860_HUMAN	--*-	Zinc finger protein 860	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain), IPR022755 (Zinc finger, double-stranded RNA binding)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01436g02008.1	AT1G28260.1	***-	Telomerase activating protein Est1 LENGTH=880	IPR011990 (Tetratricopeptide-like helical domain), IPR018834 (DNA/RNA-binding domain, Est1-type), IPR019458 (Telomerase activating protein Est1)	GO:0005515 (protein binding)
Niben101Scf09620g03003.1	ref|NP_001078070.1|	-**-	protein TILLER ANGLE CONTROL 1 [Arabidopsis thaliana] gb|AEC10733.1| uncharacterized protein [Arabidopsis thaliana]		
Niben101Scf27304g00001.1	sp|Q84NC5|MAD25_ORYSJ	***-	MADS-box transcription factor 25	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Ctg15214g00001.1	AT1G20330.1	****	sterol methyltransferase 2 LENGTH=361	IPR013705 (Sterol methyltransferase C-terminal), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0006694 (steroid biosynthetic process), GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf00597g05011.1			Unknown protein		
Niben101Scf08143g00005.1	sp|Q9FXT6|PEX14_ARATH	--*-	Peroxisomal membrane protein PEX14		
Niben101Scf01367g00022.1	gb|KEH24720.1|	*-*-	plant/F8L15-130 protein [Medicago truncatula]		
Niben101Scf00149g02005.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07829g02002.1	sp|Q9FGY4|FB341_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR015916 (Galactose oxidase, beta-propeller), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf06855g00001.1	ref|XP_002520077.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF42401.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05514g01006.1			Unknown protein		
Niben101Scf12410g01007.1	sp|P61871|LIP_RHINI	*-*-	Lipase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf02762g01006.1			Unknown protein		
Niben101Scf05916g00001.1	AT2G26980.4	****	CBL-interacting protein kinase 3 LENGTH=451	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00687g05003.1	sp|Q9STE1|PP333_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02195g01001.1	sp|Q9M7R0|ALL8_OLEEU	****	Calcium-binding allergen Ole e 8	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf05306g03024.1	sp|Q0WSH6|PP312_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00090g13016.1			Unknown protein		
Niben101Scf19071g00003.1	gb|AAP53948.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf01526g12009.1	AT5G47060.1	*-*-	Protein of unknown function (DUF581) LENGTH=177	IPR007650 (Zf-FLZ domain)	
Niben101Scf02518g01012.1	ref|XP_007021614.1|	*-*-	Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 3 [Theobroma cacao] gb|EOY13139.1| Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 3 [Theobroma cacao]		
Niben101Scf00116g04008.1	sp|Q6P829|NOSIP_XENTR	***-	Nitric oxide synthase-interacting protein	IPR016818 (Nitric oxide synthase-interacting), IPR027799 (Replication termination factor 2, RING-finger)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01401g00008.1	sp|O64644|SAP18_ARATH	***-	Histone deacetylase complex subunit SAP18	IPR010516 (Sin3 associated polypeptide p18)	
Niben101Scf00584g03002.1	sp|B4RBL4|DADA_PHEZH	--*-	D-amino acid dehydrogenase		
Niben101Scf02252g01032.1	AT2G33170.1	***-	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1124	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf00059g01004.1	AT3G09520.1	****	exocyst subunit exo70 family protein H4 LENGTH=628	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf02793g18013.1	AT1G11925.1	***-	Stigma-specific Stig1 family protein LENGTH=140	IPR006969 (Stigma-specific protein Stig1)	
Niben101Scf03939g03011.1			Unknown protein		
Niben101Scf00949g02004.1	sp|Q0WPZ6|PP158_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain), IPR027434 (Homing endonuclease)	GO:0004519 (endonuclease activity), GO:0005515 (protein binding)
Niben101Scf01237g06005.1	sp|Q9FLB5|LAC12_ARATH	***-	Laccase-12	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02494g13004.1			Unknown protein		
Niben101Scf02081g03011.1	sp|Q0J1C1|ACCO1_ORYSJ	***-	1-aminocyclopropane-1-carboxylate oxidase 1	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf04954g05004.1	AT2G20990.3	***-	synaptotagmin A LENGTH=579	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf18939g00006.1	sp|Q8RWB8|UPL6_ARATH	*-*-	E3 ubiquitin-protein ligase UPL6		
Niben101Scf05615g01004.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03824g02004.1	AT5G43650.1	*-*-	basic helix-loop-helix (bHLH) DNA-binding superfamily protein LENGTH=247	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02068g05024.1	sp|Q8HSW1|KAD1_SOLTU	*-**	Adenylate kinase	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf07400g01006.1	sp|Q93VV5|PTR16_ARATH	***-	Protein NRT1/ PTR FAMILY 4.3	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf01063g11012.1	sp|Q5FWV6|T120A_XENTR	***-	Transmembrane protein 120A	IPR012926 (TMPIT-like)	GO:0016021 (integral component of membrane)
Niben101Scf03268g04002.1			Unknown protein		
Niben101Scf05056g03034.1	sp|P93227|FNTA_SOLLC	***-	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	IPR002088 (Protein prenyltransferase, alpha subunit)	GO:0008318 (protein prenyltransferase activity), GO:0018342 (protein prenylation)
Niben101Scf01494g03012.1	ref|XP_002311586.2|	--*-	RNA recognition motif-containing family protein [Populus trichocarpa] gb|EEE88953.2| RNA recognition motif-containing family protein [Populus trichocarpa]		
Niben101Scf21394g00008.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf02552g01003.1	sp|Q9C9H7|RLP12_ARATH	*-*-	Receptor-like protein 12	IPR001611 (Leucine-rich repeat), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf05654g00003.1	gb|AFI44296.1|	****	transport membrane protein, partial (mitochondrion) [Silene vulgaris]	IPR002033 (Sec-independent periplasmic protein translocase TatC)	GO:0016021 (integral component of membrane)
Niben101Scf18080g00002.1			Unknown protein		
Niben101Scf11757g02002.1	sp|E9QAU8|RN165_MOUSE	*-*-	RING finger protein 165	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02110g00010.1	AT4G19420.1	*-*-	Pectinacetylesterase family protein LENGTH=397	IPR004963 (Protein notum homologue)	
Niben101Scf03421g05004.1	sp|Q6YXH5|ZHD1_ORYSJ	***-	Zinc-finger homeodomain protein 1	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf04083g04045.1	sp|P70168|IMB1_MOUSE	***-	Importin subunit beta-1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00530g11017.1	sp|Q9FN94|RLK7_ARATH	--*-	Receptor-like protein kinase	IPR013320 (Concanavalin A-like lectin/glucanase domain)	
Niben101Scf27945g00016.1	sp|Q7XUA8|ILL5_ORYSJ	****	IAA-amino acid hydrolase ILR1-like 5	IPR002933 (Peptidase M20)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf04629g04011.1	ref|XP_003614078.1|	--*-	HGWP repeat containing protein-like protein [Medicago truncatula]		
Niben101Scf02361g04007.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf08238g00001.1	sp|Q9K1B0|NUOL_NEIMB	*-**	NADH-quinone oxidoreductase subunit L	IPR003945 (NADH-plastoquinone oxidoreductase, chain 5)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf08791g02002.1	AT1G28310.2	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=325	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06509g05029.1	sp|Q5JLY8|GOGA5_ORYSJ	*-*-	Golgin-84		
Niben101Scf04934g04026.1	sp|Q0WPZ6|PP158_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02922g00017.1	sp|P26300|ENO_SOLLC	--*-	Enolase	IPR029065 (Enolase C-terminal domain-like)	
Niben101Scf06817g00008.1	ref|XP_010107039.1|	***-	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 [Morus notabilis] gb|EXC13351.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 [Morus notabilis]		
Niben101Scf04884g01005.1	sp|Q9LPM9|BCAT6_ARATH	****	Branched-chain-amino-acid aminotransferase 6	IPR001544 (Aminotransferase, class IV)	GO:0003824 (catalytic activity), GO:0004084 (branched-chain-amino-acid transaminase activity), GO:0008152 (metabolic process), GO:0009081 (branched-chain amino acid metabolic process)
Niben101Scf11389g01030.1	sp|Q8NEP9|ZN555_HUMAN	--*-	Zinc finger protein 555	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf15752g00002.1	AT3G57530.1	****	calcium-dependent protein kinase 32 LENGTH=538	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05246g02016.1	sp|Q84T94|P2C35_ORYSJ	***-	Protein phosphatase 2C 35	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf04862g00009.1	sp|Q7N3U6|SUFE_PHOLL	***-	Cysteine desulfuration protein SufE	IPR003808 (Fe-S metabolism associated domain, SufE-like)	
Niben101Scf01784g01016.1	AT1G45207.2	***-	Remorin family protein LENGTH=555	IPR005516 (Remorin, C-terminal)	
Niben101Scf01538g00026.1	sp|P28811|MMSB_PSEAE	****	3-hydroxyisobutyrate dehydrogenase	IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR015815 (Hydroxy monocarboxylic acid anion dehydrogenase, HIBADH-type), IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01189g00003.1	gb|EJY83874.1|	*-*-	RING-finger-containing E3 ubiquitin ligase [Oxytricha trifallax]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08020g05006.1	sp|P06797|CATL1_MOUSE	--*-	Cathepsin L1		
Niben101Scf00302g03026.1	sp|Q8RWU5|FBL3_ARATH	***-	F-box/LRR-repeat protein 3	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf01047g01009.1			Unknown protein		
Niben101Scf14009g02003.1	ref|XP_002521463.1|	*-*-	Microtubule-associated protein futsch, putative [Ricinus communis] gb|EEF40953.1| Microtubule-associated protein futsch, putative [Ricinus communis]		
Niben101Scf07261g00002.1	AT1G53400.1	***-	Ubiquitin domain-containing protein LENGTH=114		
Niben101Scf03245g04005.1	sp|Q9ZWA2|ERF77_ARATH	*-**	Ethylene-responsive transcription factor 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02766g01008.1	AT1G05370.1	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=417	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Ctg10706g00002.1			Unknown protein		
Niben101Scf02979g00005.1	sp|O66921|DNAJ2_AQUAE	*-*-	Chaperone protein DnaJ 2	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf04651g00003.1	sp|Q9LUC2|PP231_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf08091g00003.1	AT4G38840.1	***-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf05163g00002.1	sp|Q9SHJ5|GPAT1_ARATH	*-*-	Glycerol-3-phosphate acyltransferase 1	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf02553g02007.1	sp|P83876|TXN4A_HUMAN	***-	Thioredoxin-like protein 4A	IPR004123 (mRNA splicing factor, thioredoxin-like U5 snRNP), IPR012336 (Thioredoxin-like fold)	GO:0005681 (spliceosomal complex), GO:0007067 (mitotic nuclear division)
Niben101Scf36540g00003.1	sp|O42993|FKBP_SCHPO	***-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf04719g00010.1	sp|P55956|ASP3_CAEEL	*-**	Aspartic protease 3	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04477g00010.1	sp|Q8GT75|NIP1_ARATH	*-*-	NEP1-interacting protein 1		
Niben101Scf01071g02007.1			Unknown protein		
Niben101Scf00629g02007.1	sp|O13493|MYB1_NEUCR	--**	Myb-like DNA-binding protein myb-1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf06374g00021.1			Unknown protein		
Niben101Scf03716g00007.1	sp|P51846|PDC2_TOBAC	*-*-	Pyruvate decarboxylase 2	IPR011766 (Thiamine pyrophosphate enzyme, C-terminal TPP-binding), IPR012001 (Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain), IPR029035 (DHS-like NAD/FAD-binding domain), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0030976 (thiamine pyrophosphate binding)
Niben101Scf02887g01011.1	sp|O24592|NCED1_MAIZE	*-*-	9-cis-epoxycarotenoid dioxygenase 1, chloroplastic	IPR004294 (Carotenoid oxygenase)	
Niben101Scf06349g02017.1	sp|P81391|MYB05_ANTMA	***-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf29316g00011.1	sp|O80560|IP5PC_ARATH	****	Type I inositol 1,4,5-trisphosphate 5-phosphatase 12	IPR005135 (Endonuclease/exonuclease/phosphatase), IPR011041 (Soluble quinoprotein glucose/sorbosone dehydrogenase), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0003824 (catalytic activity), GO:0005515 (protein binding), GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf08652g01013.1	gb|KEH40131.1|	--*-	erythronate-4-phosphate dehydrogenase family protein [Medicago truncatula]		
Niben101Scf00388g08017.1	AT1G13220.2	*-*-	nuclear matrix constituent protein-related LENGTH=1128		
Niben101Scf01596g07001.1	sp|Q9SIT7|PP151_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06628g00003.1	sp|P24794|COX1_BETVU	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00962g03009.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf00113g06004.1	AT5G54010.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=453	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01500g01020.1	AT3G60390.1	***-	homeobox-leucine zipper protein 3 LENGTH=315	IPR003106 (Leucine zipper, homeobox-associated), IPR006712 (HD-ZIP protein, N-terminal), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01018g01010.1	sp|P49098|CYB5_TOBAC	***-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf01494g02025.1	AT1G10522.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=179		
Niben101Ctg10647g00002.1	sp|P46417|GSTX3_SOYBN	*-*-	Glutathione S-transferase 3	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf01396g03001.1	AT5G11380.1	****	1-deoxy-D-xylulose 5-phosphate synthase 3 LENGTH=700	IPR005477 (Deoxyxylulose-5-phosphate synthase), IPR009014 (Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II), IPR029061 (Thiamin diphosphate-binding fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0008661 (1-deoxy-D-xylulose-5-phosphate synthase activity), GO:0016114 (terpenoid biosynthetic process)
Niben101Scf00090g14001.1	sp|Q9SS17|RS241_ARATH	***-	40S ribosomal protein S24-1	IPR001976 (Ribosomal protein S24e), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Ctg05972g00002.1	emb|CDX71244.1|	*-*-	BnaC07g05230D [Brassica napus]	IPR012442 (Protein of unknown function DUF1645, plant)	
Niben101Scf21788g00001.1	emb|CDX88502.1|	***-	BnaC06g39460D [Brassica napus]		
Niben101Scf00739g04038.1	sp|Q9SH88|RRS1_ARATH	****	Ribosome biogenesis regulatory protein homolog	IPR007023 (Ribosomal biogenesis regulatory protein)	GO:0005634 (nucleus), GO:0042254 (ribosome biogenesis)
Niben101Scf03494g02002.1			Unknown protein		
Niben101Scf02652g01031.1	AT4G22770.1	****	AT hook motif DNA-binding family protein LENGTH=334	IPR005175 (Domain of unknown function DUF296), IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Scf00683g03020.1	sp|Q71KN3|CYB6_KLEBI	****	Cytochrome b6	IPR016174 (Di-haem cytochrome, transmembrane), IPR023530 (Cytochrome b6, PetB), IPR027387 (Cytochrome b/b6-like domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0016491 (oxidoreductase activity), GO:0020037 (heme binding), GO:0022900 (electron transport chain), GO:0022904 (respiratory electron transport chain), GO:0045158 (electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity)
Niben101Scf03851g02021.1	emb|CDX70646.1|	***-	BnaC03g07300D [Brassica napus]		
Niben101Scf07162g03015.1	sp|Q9C9V6|Y1790_ARATH	--*-	BTB/POZ domain-containing protein	IPR027356 (NPH3 domain), IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0009958 (positive gravitropism)
Niben101Scf08390g06006.1	sp|Q9BZV1|UBXN6_HUMAN	***-	UBX domain-containing protein 6	IPR006567 (PUG domain), IPR006642 (Zinc finger, Rad18-type putative), IPR018997 (PUB domain), IPR029071 (Ubiquitin-related domain)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0006281 (DNA repair)
Niben101Scf01802g02003.1	sp|Q9VQX4|PNCB_DROME	****	Nicotinate phosphoribosyltransferase	IPR002638 (Quinolinate phosphoribosyl transferase, C-terminal), IPR007229 (Nicotinate phosphoribosyltransferase family)	GO:0004514 (nicotinate-nucleotide diphosphorylase (carboxylating) activity), GO:0004516 (nicotinate phosphoribosyltransferase activity), GO:0009435 (NAD biosynthetic process), GO:0019358 (nicotinate nucleotide salvage)
Niben101Ctg05445g00003.1	sp|P26197|ACT2_ABSGL	*-*-	Actin-2	IPR004000 (Actin family)	
Niben101Scf05645g05009.1	dbj|GAE27093.1|	****	GTP-binding protein YqeH [Bacillus wakoensis JCM 9140]	IPR006073 (GTP binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf20636g00002.1	sp|Q08DI6|RNF11_BOVIN	*-*-	RING finger protein 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01448g02029.1	AT5G14550.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=377	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf03202g03001.1	sp|Q8RY17|WAKLI_ARATH	*-**	Wall-associated receptor kinase-like 22	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09065g00007.1	sp|Q9CA54|PP122_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05824g07001.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf02601g00003.1	sp|Q1INK7|PGK_KORVE	****	Phosphoglycerate kinase	IPR001576 (Phosphoglycerate kinase)	GO:0004618 (phosphoglycerate kinase activity), GO:0006096 (glycolytic process)
Niben101Scf10015g06004.1	sp|Q90W58|DUS1B_XENLA	*-**	Dual specificity protein phosphatase 1-B	IPR007122 (Villin/Gelsolin), IPR024950 (Dual specificity phosphatase), IPR029006 (ADF-H/Gelsolin-like domain), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0003779 (actin binding), GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf15366g00017.1	AT1G61800.1	***-	glucose-6-phosphate/phosphate translocator 2 LENGTH=388	IPR004696 (Triose phosphate/phosphoenolpyruvate translocator), IPR004853 (Triose-phosphate transporter domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf06221g04024.1	ref|XP_002535856.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF26527.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01249g06017.1	AT5G23690.1	*-*-	Polynucleotide adenylyltransferase family protein LENGTH=527		
Niben101Scf05848g04006.1	sp|A5WFF6|RUVB_PSYWF	--*-	Holliday junction ATP-dependent DNA helicase RuvB	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf08446g00003.1	sp|Q6NQH4|TAF13_ARATH	****	Transcription initiation factor TFIID subunit 13	IPR003195 (Transcription initiation factor IID, 18kDa subunit)	GO:0006366 (transcription from RNA polymerase II promoter), GO:0046982 (protein heterodimerization activity)
Niben101Scf07508g01002.1	sp|A6QPY8|PIN4_BOVIN	*-**	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4	IPR000297 (Peptidyl-prolyl cis-trans isomerase, PpiC-type), IPR023058 (Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site)	GO:0016853 (isomerase activity)
Niben101Scf14939g00010.1	sp|Q94KD3|VP52A_ARATH	***-	Vacuolar protein sorting-associated protein 52 A	IPR007258 (Vps52)	
Niben101Scf20652g01024.1	emb|CAE04909.2|	*-*-	OSJNBa0082E08.6 [Oryza sativa Japonica Group]		
Niben101Scf15689g00024.1	AT3G61480.1	***-	Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor LENGTH=1080	IPR009771 (Ribosome control protein 1)	
Niben101Scf05627g01035.1	sp|Q9ZU49|LPP1_ARATH	***-	Lipid phosphate phosphatase 1	IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase), IPR028681 (Lipid phosphate phosphatase, plant)	GO:0003824 (catalytic activity), GO:0016020 (membrane)
Niben101Scf01523g00024.1	sp|Q53FV1|ORML2_HUMAN	***-	ORM1-like protein 2	IPR007203 (ORMDL family)	GO:0005789 (endoplasmic reticulum membrane), GO:0016021 (integral component of membrane)
Niben101Scf08562g01002.1	sp|P0AC77|KDTA_ECO57	***-	3-deoxy-D-manno-octulosonic acid transferase	IPR007507 (3-deoxy-D-manno-octulosonic-acid transferase, N-terminal)	
Niben101Scf03728g00001.1	sp|P69781|GAT12_ARATH	****	GATA transcription factor 12	IPR016679 (Transcription factor, GATA, plant)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding), GO:0045893 (positive regulation of transcription, DNA-templated)
Niben101Scf03251g00002.1	AT5G49650.1	*-*-	xylulose kinase-2 LENGTH=558	IPR018485 (Carbohydrate kinase, FGGY, C-terminal)	GO:0005975 (carbohydrate metabolic process), GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
Niben101Scf11303g01028.1	AT1G18530.1	****	EF hand calcium-binding protein family LENGTH=157	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf08523g00021.1	sp|Q0IIJ0|NAA50_BOVIN	****	N-alpha-acetyltransferase 50	IPR016181 (Acyl-CoA N-acyltransferase)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf02358g03017.1			Unknown protein		
Niben101Ctg15145g00003.1	sp|O23970|GPX1_HELAN	****	Glutathione peroxidase 1	IPR000889 (Glutathione peroxidase), IPR012336 (Thioredoxin-like fold), IPR029759 (Glutathione peroxidase active site), IPR029760 (Glutathione peroxidase conserved site)	GO:0004602 (glutathione peroxidase activity), GO:0006979 (response to oxidative stress), GO:0055114 (oxidation-reduction process)
Niben101Scf00142g00003.1			Unknown protein		
Niben101Scf05552g06006.1	sp|A4GG98|PSAB_PHAVU	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf01208g01013.1	sp|A5GLA3|RS18_SYNPW	--*-	30S ribosomal protein S18	IPR001648 (Ribosomal protein S18)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00109g10006.1	AT5G08391.1	***-	Protein of unknown function (DUF 3339) LENGTH=69	IPR021775 (Protein of unknown function DUF3339)	
Niben101Scf02929g06025.1			Unknown protein		
Niben101Scf10196g00004.1	sp|O04706|GAO1B_WHEAT	***-	Gibberellin 20 oxidase 1-B	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01474g01001.1	emb|CDY29738.1|	--*-	BnaAnng03600D [Brassica napus]		
Niben101Scf10316g00006.1	AT2G37980.1	***-	O-fucosyltransferase family protein LENGTH=638	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf04422g17002.1	sp|Q589B9|RPOC1_SILLA	*-**	DNA-directed RNA polymerase subunit beta'	IPR007066 (RNA polymerase Rpb1, domain 3)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Scf00177g07007.1	emb|CDY18385.1|	***-	BnaA04g22020D [Brassica napus]		
Niben101Scf05351g00016.1			Unknown protein		
Niben101Scf00265g01015.1	AT3G50590.1	***-	Transducin/WD40 repeat-like superfamily protein LENGTH=1614	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05434g02024.1			Unknown protein	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf00709g04010.1	AT5G67385.1	***-	Phototropic-responsive NPH3 family protein LENGTH=604	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf02430g02003.1	sp|Q65I24|UBIE_BACLD	--**	Demethylmenaquinone methyltransferase	IPR006342 (Methyltransferase FkbM), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008152 (metabolic process), GO:0008168 (methyltransferase activity)
Niben101Scf08430g01008.1	sp|Q8VDQ9|KRI1_MOUSE	*-*-	Protein KRI1 homolog	IPR018034 (KRR1 interacting protein 1), IPR024626 (Kri1-like, C-terminal)	
Niben101Scf05523g00016.1	sp|Q2HBE7|DED1_CHAGB	*-**	ATP-dependent RNA helicase DED1	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf08982g00016.1	AT4G00335.1	*-*-	RING-H2 finger B1A LENGTH=190		
Niben101Scf12017g05019.1	sp|Q54TH4|GET4_DICDI	***-	Golgi to ER traffic protein 4 homolog	IPR007317 (Uncharacterised protein family UPF0363)	
Niben101Scf02864g11030.1			Unknown protein	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf05928g00006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06087g08005.1			Unknown protein		
Niben101Scf00747g02003.1	sp|Q58860|THRC_METJA	***-	Threonine synthase	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme), IPR004450 (Threonine synthase-like)	GO:0006520 (cellular amino acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf09186g00005.1	gb|ABA42911.1|	--*-	trypsin proteinase inhibitor precursor [Nicotiana obtusifolia]		
Niben101Scf00313g04006.1	sp|Q9C552|PUM23_ARATH	*-*-	Pumilio homolog 23	IPR011989 (Armadillo-like helical)	
Niben101Scf01289g00001.1	sp|Q8N2M8|CLASR_HUMAN	*-*-	CLK4-associating serine/arginine rich protein	IPR019147 (Suppressor of white apricot N-terminal domain)	
Niben101Scf00013g03009.1			Unknown protein		
Niben101Scf09523g00007.1	sp|Q9LY87|RGLG2_ARATH	***-	E3 ubiquitin-protein ligase RGLG2	IPR002035 (von Willebrand factor, type A), IPR010734 (Copine), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf17336g00009.1	AT1G49890.1	***-	Family of unknown function (DUF566) LENGTH=659	IPR007573 (Protein of unknown function DUF566)	
Niben101Scf12202g00012.1	sp|A2QW93|HSE1_ASPNC	*-*-	Class E vacuolar protein-sorting machinery protein hse1	IPR004152 (GAT domain), IPR008942 (ENTH/VHS)	GO:0005622 (intracellular), GO:0006886 (intracellular protein transport)
Niben101Scf00691g03016.1	ref|XP_002511763.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF50432.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups), GO:0047262 (polygalacturonate 4-alpha-galacturonosyltransferase activity)
Niben101Scf17956g00003.1	gb|AID55064.1|	*-*-	disease resistance protein, partial [Solanum habrochaites]		
Niben101Scf12983g01013.1	sp|P0C8Z7|GDL91_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf05151g03015.1	sp|O80513|CCU41_ARATH	****	Cyclin-U4-1	IPR013763 (Cyclin-like), IPR013922 (Cyclin PHO80-like)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0019901 (protein kinase binding)
Niben101Scf00031g01007.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00069g03014.1	sp|O82248|NFYB5_ARATH	****	Nuclear transcription factor Y subunit B-5	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf09427g01010.1	emb|CDY61171.1|	***-	BnaC06g07410D [Brassica napus]		
Niben101Scf04554g00001.1			Unknown protein		
Niben101Scf01228g02012.1	sp|A2WT95|PLA1_ORYSI	***-	Phospholipase A1-II 1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf06562g02014.1	ref|XP_002520140.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF42195.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07643g00010.1	AT1G48480.1	*-**	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02805g02016.1			Unknown protein		
Niben101Scf07942g04004.1			Unknown protein		
Niben101Scf00603g03023.1	AT1G01225.1	***-	NC domain-containing protein-related LENGTH=260	IPR007053 (LRAT-like domain)	
Niben101Scf04044g01034.1	AT5G05710.1	***-	Pleckstrin homology (PH) domain superfamily protein LENGTH=144	IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf03739g07021.1	sp|Q5P1E7|NUOD_AROAE	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09811g01002.1	sp|B5FPN1|FADJ_SALDC	*-**	Fatty acid oxidation complex subunit alpha	IPR022694 (3-hydroxyacyl-CoA dehydrogenase)	GO:0003857 (3-hydroxyacyl-CoA dehydrogenase activity), GO:0006631 (fatty acid metabolic process), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process), GO:0070403 (NAD+ binding)
Niben101Scf13411g05013.1	sp|Q2HIW2|MAPR4_ARATH	****	Membrane-associated progesterone-binding protein 4	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf04557g00008.1	AT2G36870.1	*-**	xyloglucan endotransglucosylase/hydrolase 32 LENGTH=299	IPR010713 (Xyloglucan endo-transglycosylase, C-terminal), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf04120g03013.1	sp|Q67ZB3|FRL3_ARATH	***-	FRIGIDA-like protein 3	IPR012474 (Frigida-like)	
Niben101Scf01221g12002.1			Unknown protein		
Niben101Scf08522g02003.1	AT4G16340.1	*-**	guanyl-nucleotide exchange factors;GTPase binding;GTP binding LENGTH=1830	IPR026791 (Dedicator of cytokinesis)	GO:0005085 (guanyl-nucleotide exchange factor activity), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf09928g01023.1	sp|Q9JI10|STK3_MOUSE	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02130g00003.1	sp|P52478|UBC1_CAEEL	*-*-	Ubiquitin-conjugating enzyme E2 1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR027230 (SUMO-conjugating enzyme Ubc9)	GO:0019789 (SUMO transferase activity)
Niben101Scf11757g01002.1			Unknown protein		
Niben101Scf00747g06002.1	emb|CDX96411.1|	***-	BnaA07g30220D [Brassica napus]		
Niben101Scf17294g00004.1	sp|P56371|RAB4A_MOUSE	***-	Ras-related protein Rab-4A	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf07729g03006.1	AT5G12400.1	*-**	DNA binding;zinc ion binding;DNA binding LENGTH=1602	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00177g04006.1	sp|Q9SRT0|PUB9_ARATH	***-	U-box domain-containing protein 9	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf00823g01010.1	sp|Q570C0|TIR1_ARATH	***-	Protein TRANSPORT INHIBITOR RESPONSE 1	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf08088g02004.1	AT1G04530.1	*-*-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=310	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00276g05017.1	emb|CDY52515.1|	***-	BnaC03g61080D [Brassica napus]		
Niben101Scf08226g01003.1	sp|Q9M1V2|SOT5_ARATH	****	Cytosolic sulfotransferase 5	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf00592g15018.1	sp|O22755|ATL44_ARATH	*-*-	RING-H2 finger protein ATL44		
Niben101Scf02063g05002.1			Unknown protein		
Niben101Scf08328g00011.1	AT5G20140.2	***-	SOUL heme-binding family protein LENGTH=395	IPR006917 (SOUL haem-binding protein), IPR011256 (Regulatory factor, effector binding domain), IPR018790 (Protein of unknown function DUF2358)	
Niben101Scf03555g02022.1	ref|XP_003601496.1|	*-*-	Membrane protein, putative [Medicago truncatula]		
Niben101Scf02033g02017.1			Unknown protein		
Niben101Scf00056g06003.1	gb|KEH34353.1|	*-*-	acyl-CoA N-acyltransferase (NAT) superfamily protein, putative [Medicago truncatula]		
Niben101Scf00761g07014.1	sp|Q8CH62|ORAV1_MOUSE	***-	Oral cancer-overexpressed protein 1 homolog	IPR019191 (Essential protein Yae1, N-terminal)	
Niben101Scf03376g04004.1	sp|Q38861|XPB1_ARATH	*-**	DNA repair helicase XPB1	IPR001161 (Helicase Ercc3), IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004003 (ATP-dependent DNA helicase activity), GO:0006289 (nucleotide-excision repair)
Niben101Scf03101g00008.1	sp|Q8VYI9|NLTL5_ARATH	--*-	Non-specific lipid-transfer protein-like protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf13361g01005.1	AT3G58480.1	***-	calmodulin-binding family protein LENGTH=575		
Niben101Scf09817g00007.1	gb|AES71102.2|	--*-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]		
Niben101Scf01326g05017.1	sp|Q9ZVH4|CUL3A_ARATH	****	Cullin-3A	IPR001373 (Cullin, N-terminal), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf14115g01011.1			Unknown protein	IPR006566 (FBD domain)	
Niben101Scf00595g00015.1	AT5G23940.1	****	HXXXD-type acyl-transferase family protein LENGTH=484	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf01198g02004.1	gb|KEH31850.1|	--*-	RING-finger ubiquitin ligase [Medicago truncatula]		
Niben101Scf02086g01013.1	sp|Q9Z1A9|TBCD8_MOUSE	*-*-	TBC1 domain family member 8	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf01124g16011.1	ref|XP_007014955.1|	*-*-	Far1-related sequence 4 isoform 3 [Theobroma cacao] gb|EOY32574.1| Far1-related sequence 4 isoform 3 [Theobroma cacao]	IPR004330 (FAR1 DNA binding domain)	
Niben101Scf10032g01001.1	sp|P34885|KPC1B_CAEEL	--**	Protein kinase C-like 1B	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02601g06006.1	AT1G04500.1	*-*-	CCT motif family protein LENGTH=386	IPR010402 (CCT domain)	GO:0005515 (protein binding)
Niben101Scf08954g01003.1	sp|Q9LUJ2|PP249_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf09929g00004.1	sp|Q1ECJ7|ARPC3_ARATH	****	Actin-related protein 2/3 complex subunit 3	IPR007204 (Actin-related protein 2/3 complex subunit 3)	GO:0005856 (cytoskeleton), GO:0005885 (Arp2/3 protein complex), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf08182g00002.1	AT5G56120.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=236		
Niben101Scf13710g03012.1	sp|P48368|CRTE_CYAPA	*-*-	Geranylgeranyl diphosphate synthase	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf06772g01005.1	ref|XP_002526600.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35759.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00022g09011.1	ref|WP_019475137.1|	*-**	membrane protein [Prochlorococcus sp. W2]	IPR003425 (Uncharacterised protein family Ycf19)	GO:0016020 (membrane)
Niben101Scf32877g00001.1	sp|P31821|GAG_FIVT2	--*-	Gag polyprotein	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02188g02028.1	AT3G27000.1	****	actin related protein 2 LENGTH=389	IPR004000 (Actin family)	GO:0005524 (ATP binding), GO:0005856 (cytoskeleton), GO:0005885 (Arp2/3 protein complex), GO:0030833 (regulation of actin filament polymerization), GO:0034314 (Arp2/3 complex-mediated actin nucleation)
Niben101Scf07842g00010.1	sp|P40934|CYB5_BRAOB	***-	Cytochrome b5	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf08198g00003.1	sp|Q6N069|NAA16_HUMAN	***-	N-alpha-acetyltransferase 16, NatA auxiliary subunit	IPR021183 (N-terminal acetyltransferase A, auxiliary subunit)	GO:0005515 (protein binding)
Niben101Scf00905g12005.1	gb|KEH17617.1|	***-	structural constituent of cell wall protein, putative [Medicago truncatula]	IPR010820 (Protein of unknown function DUF1421)	
Niben101Scf01529g04009.1	AT4G21490.1	***-	NAD(P)H dehydrogenase B3 LENGTH=580	IPR011992 (EF-hand domain pair), IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR016040 (NAD(P)-binding domain), IPR023753 (Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain)	GO:0005509 (calcium ion binding), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03449g02015.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf09447g01018.1	sp|Q9SN23|LBD38_ARATH	*-*-	LOB domain-containing protein 38	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf12415g00017.1	AT1G70810.1	****	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=165	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf11008g04009.1	sp|Q9HDW7|ATC2_SCHPO	****	Calcium-transporting ATPase 2	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0005388 (calcium-transporting ATPase activity), GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding), GO:0070588 (calcium ion transmembrane transport)
Niben101Scf03026g01002.1			Unknown protein		
Niben101Scf00577g02007.1	sp|Q09YJ3|CTTB2_MUNMU	--*-	Cortactin-binding protein 2	IPR010776 (Tat binding protein 1-interacting), IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf02637g01002.1	gb|KEH22328.1|	*-*-	SANTA (SANT associated) protein [Medicago truncatula]	IPR015216 (SANT associated)	
Niben101Scf06326g00032.1	sp|A4J2B1|MURG_DESRM	*-**	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	IPR007235 (Glycosyl transferase, family 28, C-terminal), IPR009695 (Diacylglycerol glucosyltransferase, N-terminal)	GO:0005975 (carbohydrate metabolic process), GO:0009247 (glycolipid biosynthetic process), GO:0016758 (transferase activity, transferring hexosyl groups), GO:0030246 (carbohydrate binding), GO:0030259 (lipid glycosylation)
Niben101Scf09079g02002.1	sp|Q9C648|GDL23_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf01740g16007.1	AT5G36250.1	***-	Protein phosphatase 2C family protein LENGTH=448	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf14634g00002.1	sp|Q9M1E2|PTR37_ARATH	*-*-	Protein NRT1/ PTR FAMILY 2.7	IPR000109 (Proton-dependent oligopeptide transporter family)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf07008g00032.1	sp|P24102|PER22_ARATH	****	Peroxidase 22	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13168g00012.1	sp|Q79666|POL_HV1MV	--*-	Gag-Pol polyprotein	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Ctg14462g00001.1	AT5G20220.1	*-*-	zinc knuckle (CCHC-type) family protein LENGTH=393		
Niben101Scf05816g02001.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein		
Niben101Scf04440g00007.1	sp|Q9LMJ3|GDL1_ARATH	*-*-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	
Niben101Scf02264g00009.1	sp|A4IJ27|ROGF3_ARATH	****	Rop guanine nucleotide exchange factor 3	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf05203g03015.1	sp|A2Z730|ILI7_ORYSI	***-	Transcription factor ILI7	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf36506g00004.1	sp|P14864|EF1A2_MUCCL	***-	Elongation factor 1-alpha	IPR000795 (Elongation factor, GTP-binding domain), IPR001876 (Zinc finger, RanBP2-type), IPR009000 (Translation protein, beta-barrel domain), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0008270 (zinc ion binding)
Niben101Scf00297g00001.1	sp|Q87MS5|MSRB_VIBPA	****	Peptide methionine sulfoxide reductase MsrB	IPR011057 (Mss4-like), IPR028427 (Peptide methionine sulfoxide reductase)	GO:0006979 (response to oxidative stress), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0030091 (protein repair), GO:0033743 (peptide-methionine (R)-S-oxide reductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05438g03005.1	sp|O65399|E131_ARATH	***-	Glucan endo-1,3-beta-glucosidase 1	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf01555g01007.1	emb|CDY35740.1|	--*-	BnaC03g58610D [Brassica napus]		
Niben101Scf02497g01010.1	sp|Q9ZUH5|SDR2B_ARATH	*-*-	Short-chain dehydrogenase/reductase 2b		
Niben101Scf00497g06005.1	emb|CDY22347.1|	***-	BnaA06g36690D [Brassica napus]		
Niben101Scf08230g00018.1	AT2G26230.1	****	uricase / urate oxidase / nodulin 35, putative LENGTH=309	IPR002042 (Uricase)	GO:0004846 (urate oxidase activity), GO:0006144 (purine nucleobase metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf01825g02021.1	AT5G21130.1	***-	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=281		
Niben101Scf03100g00002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10157g01024.1	ref|XP_007014084.1|	***-	ARM repeat superfamily protein, putative isoform 2 [Theobroma cacao] gb|EOY31703.1| ARM repeat superfamily protein, putative isoform 2 [Theobroma cacao]	IPR016024 (Armadillo-type fold), IPR026003 (HEAT repeat associated with sister chromatid cohesion protein)	GO:0005488 (binding)
Niben101Scf05178g00007.1	gb|ADL36898.1|	*-*-	At1g62390-like protein [Arabidopsis lyrata subsp. lyrata]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02812g02017.1	sp|Q8BFW9|GTR12_MOUSE	*-**	Solute carrier family 2, facilitated glucose transporter member 12	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04375g12007.1	ref|XP_007048544.1|	****	TGACG-sequence-specific DNA-binding protein TGA-2.1, putative [Theobroma cacao] gb|EOX92701.1| TGACG-sequence-specific DNA-binding protein TGA-2.1, putative [Theobroma cacao]	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04339g02010.1	ref|XP_002869579.1|	****	rab GTPase activator [Arabidopsis lyrata subsp. lyrata] gb|EFH45838.1| rab GTPase activator [Arabidopsis lyrata subsp. lyrata]	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf05201g09003.1	sp|Q8RWQ4|RGAP7_ARATH	***-	Rho GTPase-activating protein 7	IPR008936 (Rho GTPase activation protein), IPR011993 (Pleckstrin homology-like domain), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf06570g04001.1	AT1G28260.1	***-	Telomerase activating protein Est1 LENGTH=880	IPR011990 (Tetratricopeptide-like helical domain), IPR018834 (DNA/RNA-binding domain, Est1-type), IPR019458 (Telomerase activating protein Est1)	GO:0005515 (protein binding)
Niben101Scf15153g02002.1	sp|Q9SXC8|UFC1_ARATH	***-	Ubiquitin-fold modifier-conjugating enzyme 1	IPR014806 (Ubiquitin-fold modifier-conjugating enzyme 1)	
Niben101Scf02033g02014.1	sp|Q9LNW3|P2C03_ARATH	****	Protein phosphatase 2C 3	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf00526g00020.1			Unknown protein	IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Scf03830g00008.1	gb|KGG24243.1|	--*-	Permease of the drug/metabolite transporter [Prochlorococcus marinus str. SS35]		
Niben101Scf08157g00005.1	ref|XP_007021272.1|	--*-	ADP-rib AGD5 isoform 1 [Theobroma cacao]		
Niben101Scf00774g01028.1	sp|Q9LVN1|FH13_ARATH	*-*-	Formin-like protein 13	IPR000008 (C2 domain), IPR015425 (Formin, FH2 domain), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0005515 (protein binding)
Niben101Scf06388g01034.1	sp|Q9SS60|PP210_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf04977g00004.1	sp|Q54M20|TTC4_DICDI	*-*-	Tetratricopeptide repeat protein 4 homolog		
Niben101Scf12457g00004.1	sp|Q9LNU6|PPR53_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf11447g02007.1	sp|B6YXJ9|SPEE_THEON	***-	Polyamine aminopropyl transferase	IPR001045 (Spermidine/spermine synthases family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003824 (catalytic activity)
Niben101Scf00735g00008.1			Unknown protein		
Niben101Scf00174g00001.1	gb|AES66882.2|	***-	amino-terminal region of chorein, A TM vesicle-mediated sorter [Medicago truncatula]	IPR026728 (UHRF1-binding protein 1-like)	
Niben101Scf02648g01003.1	sp|Q570N1|PP2B3_ARATH	***-	F-box protein PP2-B3	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf03925g02001.1	sp|Q5E9J7|ADAT2_BOVIN	***-	tRNA-specific adenosine deaminase 2	IPR016193 (Cytidine deaminase-like)	GO:0003824 (catalytic activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity)
Niben101Scf15538g00001.1	gb|ABD64919.1|	***-	Lil3 protein, putative [Brassica oleracea]	IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf06361g01008.1	sp|Q0VFE7|DRS7B_XENTR	****	Dehydrogenase/reductase SDR family member 7B	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01735g01001.1			Unknown protein		
Niben101Scf00133g02005.1	emb|CDX85900.1|	*-*-	BnaC06g22340D [Brassica napus]		
Niben101Scf12858g01029.1	sp|Q9SZH2|PER43_ARATH	****	Peroxidase 43	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04418g09009.1	AT3G52440.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=247	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf15885g00028.1	gb|AIF76113.1|	****	cytochrome c biogenesis B, partial (mitochondrion) [Halodule pinifolia]	IPR003544 (Cytochrome c-type biogenesis protein CcmB)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf00712g01012.1	AT1G54850.1	***-	HSP20-like chaperones superfamily protein LENGTH=206		
Niben101Scf07764g00002.1	sp|Q94F58|NAC89_ARATH	***-	NAC domain-containing protein 89	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00982g00005.1			Unknown protein		
Niben101Scf20124g00003.1	sp|Q9SH59|RTNLC_ARATH	--*-	Reticulon-like protein B3		
Niben101Scf00953g02002.1	emb|CDX83090.1|	*-*-	BnaA01g20900D [Brassica napus]		
Niben101Scf01073g01010.1	AT1G67590.1	***-	Remorin family protein LENGTH=347	IPR005516 (Remorin, C-terminal)	
Niben101Scf36506g00001.1	AT1G68390.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=408	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf02772g04001.1	sp|Q6IUY1|RHBL3_TOXGO	*-*-	Rhomboid-like protease 3	IPR002610 (Peptidase S54, rhomboid)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf02786g01026.1	ref|NP_043247.1|	*-**	phot of the photosystem II reaction center core heterodimer [Cyanophora paradoxa]	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf02860g00006.1	AT4G04900.1	*-*-	ROP-interactive CRIB motif-containing protein 10 LENGTH=156	IPR000095 (CRIB domain)	
Niben101Ctg15759g00003.1	AT1G70570.2	*-*-	anthranilate phosphoribosyltransferase, putative LENGTH=632		
Niben101Scf03728g00003.1	emb|CDX97128.1|	-**-	BnaC09g44970D [Brassica napus]		
Niben101Scf00168g08009.1	sp|Q11DQ8|CH602_CHESB	--*-	60 kDa chaperonin 2	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0044267 (cellular protein metabolic process)
Niben101Scf04364g01009.1	sp|Q9M9S0|ZHD4_ARATH	*-*-	Zinc-finger homeodomain protein 4	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain)	
Niben101Scf00073g00009.1	sp|Q7XT39|EXPB5_ORYSJ	***-	Expansin-B5	IPR007117 (Expansin, cellulose-binding-like domain)	
Niben101Scf07226g05002.1	sp|O65572|CCD1_ARATH	*-*-	Carotenoid 9,10(9',10')-cleavage dioxygenase 1	IPR004294 (Carotenoid oxygenase)	
Niben101Scf06912g01019.1	sp|Q1KXW3|PSBC_HELAN	*-**	Photosystem II CP43 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf01313g06024.1	gb|KEH17055.1|	***-	F-box/RNI/FBD-like domain protein [Medicago truncatula]		
Niben101Scf02175g03014.1	sp|P0A4V9|FTSH_MYCBO	****	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR005936 (Peptidase, FtsH), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf04044g01031.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf20652g01026.1	sp|Q8W4S4|VHAA3_ARATH	****	V-type proton ATPase subunit a3	IPR002490 (V-type  ATPase, V0 complex, 116kDa subunit family)	GO:0000220 (vacuolar proton-transporting V-type ATPase, V0 domain), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf14881g02007.1	sp|Q3E9D5|DCAM4_ARATH	****	S-adenosylmethionine decarboxylase proenzyme 4	IPR001985 (S-adenosylmethionine decarboxylase), IPR016067 (S-adenosylmethionine decarboxylase, core), IPR018167 (S-adenosylmethionine decarboxylase subgroup)	GO:0004014 (adenosylmethionine decarboxylase activity), GO:0006597 (spermine biosynthetic process), GO:0008295 (spermidine biosynthetic process)
Niben101Scf09005g00010.1	sp|Q62848|ARFG1_RAT	*-**	ADP-ribosylation factor GTPase-activating protein 1	IPR000008 (C2 domain), IPR001164 (Arf GTPase activating protein)	GO:0005515 (protein binding), GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf01887g08022.1	AT4G34310.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=1228	IPR012908 (GPI inositol-deacylase PGAP1-like), IPR016024 (Armadillo-type fold), IPR029058 (Alpha/Beta hydrolase fold)	GO:0005488 (binding), GO:0006505 (GPI anchor metabolic process), GO:0006886 (intracellular protein transport), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf09127g01005.1	sp|Q9WVJ0|KCNH3_MOUSE	*-*-	Potassium voltage-gated channel subfamily H member 3	IPR013099 (Two pore domain potassium channel domain), IPR014710 (RmlC-like jelly roll fold), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf00548g00009.1	sp|Q9SSR4|PPR77_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002625 (Smr protein/MutS2 C-terminal), IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08478g04001.1	sp|Q9P2Y5|UVRAG_HUMAN	*-*-	UV radiation resistance-associated gene protein		
Niben101Scf01681g09001.1	sp|Q1CZI7|HTPG_MYXXD	*-*-	Chaperone protein HtpG	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf03012g03021.1	AT2G43840.2	***-	UDP-glycosyltransferase 74 F1 LENGTH=449	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00023g08011.1	AT5G55090.1	****	mitogen-activated protein kinase kinase kinase 15 LENGTH=448	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06884g00013.1	sp|Q9LTV8|PP224_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf05932g01005.1	sp|P49689|RS30_ARATH	***-	40S ribosomal protein S30	IPR006846 (Ribosomal protein S30)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06132g00031.1	sp|O04027|NFYB4_ARATH	***-	Nuclear transcription factor Y subunit B-4	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf08977g01003.1	sp|Q46909|YGCS_ECOLI	--**	Inner membrane metabolite transport protein YgcS	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf03987g03004.1	AT5G36930.2	***-	Disease resistance protein (TIR-NBS-LRR class) family LENGTH=1191	IPR000157 (Toll/interleukin-1 receptor homology (TIR) domain), IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR026906 (Leucine rich repeat 5), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0007165 (signal transduction), GO:0043531 (ADP binding)
Niben101Scf01954g01001.1	sp|Q88J85|MSUE_PSEPK	-***	FMN reductase (NADPH)	IPR029039 (Flavoprotein-like)	GO:0016491 (oxidoreductase activity)
Niben101Scf03712g01008.1	AT3G53260.1	****	phenylalanine ammonia-lyase 2 LENGTH=717	IPR001106 (Aromatic amino acid lyase), IPR023144 (Phenylalanine ammonia-lyase, shielding domain), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0006559 (L-phenylalanine catabolic process), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf02482g02011.1	sp|O35144|TERF2_MOUSE	*-**	Telomeric repeat-binding factor 2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf06901g00010.1			Unknown protein		
Niben101Scf07054g05008.1	sp|Q93W93|FBK22_ARATH	*-*-	F-box/kelch-repeat protein	IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf07024g00008.1	sp|O49621|MLO1_ARATH	***-	MLO-like protein 1	IPR004326 (Mlo-related protein)	GO:0006952 (defense response), GO:0016021 (integral component of membrane)
Niben101Scf11969g00007.1	sp|Q8LEJ6|FLA11_ARATH	***-	Fasciclin-like arabinogalactan protein 11	IPR000782 (FAS1 domain)	
Niben101Scf07284g02002.1	sp|O22929|BL1S1_ARATH	*-*-	Biogenesis of lysosome-related organelles complex 1 subunit 1	IPR009395 (GCN5-like 1)	
Niben101Scf00761g06020.1	sp|Q9FKS4|ATR_ARATH	*-*-	Serine/threonine-protein kinase ATR	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf00436g06001.1	emb|CDY20313.1|	*-*-	BnaC04g36430D [Brassica napus]		
Niben101Scf08347g00001.1	gb|KEH90138.1|	--*-	ATPase [Clostridium novyi A str. 4540]	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf17612g01005.1	sp|Q93Z08|E136_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 6	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04918g06012.1	sp|P31237|ACCO_ACTDE	***-	1-aminocyclopropane-1-carboxylate oxidase	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf09817g00004.1	sp|Q6NPT8|PP2B1_ARATH	*-*-	F-box protein PP2-B1	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf06684g05005.1	sp|Q9FLV9|SLAH3_ARATH	*-**	S-type anion channel SLAH3	IPR004695 (Voltage-dependent anion channel)	GO:0006873 (cellular ion homeostasis), GO:0008308 (voltage-gated anion channel activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00854g03045.1	sp|P08742|COX1_MAIZE	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg08315g00001.1	sp|P45302|ODO2_HAEIN	--*-	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex	IPR001078 (2-oxoacid dehydrogenase acyltransferase, catalytic domain), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf00439g02002.1			Unknown protein		
Niben101Scf01818g00011.1	sp|Q9M2W3|PGPS2_ARATH	****	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2	IPR000462 (CDP-alcohol phosphatidyltransferase)	GO:0008654 (phospholipid biosynthetic process), GO:0016020 (membrane), GO:0016780 (phosphotransferase activity, for other substituted phosphate groups)
Niben101Scf02517g17013.1	sp|B8DRU2|RLMN_DESVM	****	Dual-specificity RNA methyltransferase RlmN	IPR004383 (Ribosomal RNA large subunit methyltransferase RlmN/Cfr), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0006364 (rRNA processing), GO:0008173 (RNA methyltransferase activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf06447g00005.1	sp|Q8LC83|RS242_ARATH	***-	40S ribosomal protein S24-2	IPR001976 (Ribosomal protein S24e), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf14634g00003.1	sp|Q9M1E2|PTR37_ARATH	--*-	Protein NRT1/ PTR FAMILY 2.7		
Niben101Scf09929g00006.1	sp|C9JPN9|UL17C_HUMAN	****	Ubiquitin carboxyl-terminal hydrolase 17-like protein 12	IPR028889 (Ubiquitin specific protease domain)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0036459 (ubiquitinyl hydrolase activity)
Niben101Scf01911g08011.1	sp|O32472|PHAJ_AERCA	***-	(R)-specific enoyl-CoA hydratase	IPR029069 (HotDog domain)	
Niben101Scf06162g01006.1	AT2G44500.1	***-	O-fucosyltransferase family protein LENGTH=573	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf01716g00028.1	ref|NP_001052131.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf01281g08009.1	sp|Q5FVJ8|SENP8_RAT	***-	Sentrin-specific protease 8	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf04841g00031.1	AT2G01290.1	****	ribose-5-phosphate isomerase 2 LENGTH=265	IPR004788 (Ribose 5-phosphate isomerase, type A)	GO:0004751 (ribose-5-phosphate isomerase activity), GO:0009052 (pentose-phosphate shunt, non-oxidative branch)
Niben101Scf02522g01003.1	sp|Q6ZQ03|FNBP4_MOUSE	--*-	Formin-binding protein 4		
Niben101Scf00786g02010.1	sp|Q9C7F5|NTF2_ARATH	****	Nuclear transport factor 2	IPR002075 (Nuclear transport factor 2)	GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf34839g00005.1	emb|CDY60165.1|	--*-	BnaAnng16590D [Brassica napus]		
Niben101Scf01221g16004.1			Unknown protein		
Niben101Scf12415g00016.1	ref|WP_025966977.1|	*-*-	adhesin [Bacillus cereus]		
Niben101Scf10162g01003.1	AT1G10710.1	*-*-	poor homologous synapsis 1 LENGTH=410		
Niben101Scf05845g03015.1	AT5G28770.2	****	bZIP transcription factor family protein LENGTH=314	IPR004827 (Basic-leucine zipper domain), IPR020983 (Basic leucine-zipper, C-terminal)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01240g08004.1	AT5G47750.1	****	D6 protein kinase like 2 LENGTH=586	IPR011009 (Protein kinase-like domain), IPR011993 (Pleckstrin homology-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11253g00004.1	sp|Q63347|PRS7_RAT	***-	26S protease regulatory subunit 7	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf00270g01016.1	AT2G43235.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=437		
Niben101Scf05562g00019.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR015757 (Calcineurin B protein)	GO:0005509 (calcium ion binding)
Niben101Scf01942g04002.1	sp|A4FV54|RAB8A_BOVIN	***-	Ras-related protein Rab-8A	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf23901g00007.1	AT2G02050.1	****	NADH-ubiquinone oxidoreductase B18 subunit, putative LENGTH=103	IPR008698 (NADH:ubiquinone oxidoreductase, B18 subunit)	GO:0003954 (NADH dehydrogenase activity), GO:0005739 (mitochondrion), GO:0008137 (NADH dehydrogenase (ubiquinone) activity)
Niben101Scf06779g03028.1	sp|Q9SFF9|GL17_ARATH	***-	Germin-like protein subfamily 1 member 7	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf01190g00012.1	sp|Q5JKB0|MCM4_ORYSJ	****	DNA replication licensing factor MCM4	IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR004039 (Rubredoxin-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027925 (MCM N-terminal domain)	GO:0003677 (DNA binding), GO:0003678 (DNA helicase activity), GO:0005524 (ATP binding), GO:0006260 (DNA replication), GO:0006270 (DNA replication initiation), GO:0042555 (MCM complex)
Niben101Scf05952g02011.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf02354g12005.1	emb|CDY45015.1|	***-	BnaA08g12040D [Brassica napus]		
Niben101Scf07172g00005.1	sp|Q9LUL5|PP229_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf07304g04002.1	AT2G18950.1	*-*-	homogentisate phytyltransferase 1 LENGTH=393	IPR000537 (UbiA prenyltransferase family)	GO:0004659 (prenyltransferase activity), GO:0016021 (integral component of membrane)
Niben101Scf01773g06004.1	ref|XP_002515190.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF47174.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf20887g00008.1	sp|A2Y5R6|EXPA4_ORYSI	***-	Expansin-A4	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf00597g03003.1	sp|O18413|PRS8_DROME	***-	26S protease regulatory subunit 8	IPR003959 (ATPase, AAA-type, core), IPR005937 (26S proteasome subunit P45), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0016787 (hydrolase activity), GO:0030163 (protein catabolic process)
Niben101Scf03801g02008.1	AT2G39805.2	***-	Integral membrane Yip1 family protein LENGTH=276		
Niben101Scf06932g00015.1	sp|Q84WQ5|CBSX5_ARATH	*-*-	CBS domain-containing protein CBSX5		
Niben101Scf03613g00011.1	sp|Q9SDZ9|PPAF2_IPOBA	****	Purple acid phosphatase 2	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf09871g00007.1	sp|O80522|GDL2_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02074g01003.1	ref|WP_002997374.1|	--*-	histidine kinase [Sphingobacterium spiritivorum] gb|EFK59495.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Sphingobacterium spiritivorum ATCC 33861]		
Niben101Scf04684g02004.1	AT5G55690.1	*-*-	MADS-box transcription factor family protein LENGTH=277	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00276g01007.1	sp|B7J7X8|DNAJ_ACIF2	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf07162g03019.1	sp|Q27368|E2F_DROME	*-**	Transcription factor E2f	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR015633 (E2F Family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005667 (transcription factor complex), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09260g03002.1	AT1G27320.1	***-	histidine kinase 3 LENGTH=1036	IPR003594 (Histidine kinase-like ATPase, C-terminal domain), IPR004358 (Signal transduction histidine kinase-related protein, C-terminal), IPR005467 (Signal transduction histidine kinase, core), IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system), GO:0016310 (phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07070g02007.1	sp|Q55FK2|RAB6_DICDI	*-*-	Ras-related protein Rab-6	IPR001806 (Small GTPase superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf14311g00011.1			Unknown protein		
Niben101Scf08381g02001.1	sp|Q05967|PGLR_TOBAC	*-**	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06249g00008.1	sp|Q9LQ02|NRPD1_ARATH	--*-	DNA-directed RNA polymerase IV subunit 1	IPR015801 (Copper amine oxidase, N2/N3-terminal), IPR021602 (Protein of unknown function DUF3223)	GO:0005507 (copper ion binding), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding)
Niben101Scf02387g01003.1	AT3G20480.1	****	tetraacyldisaccharide 4'-kinase family protein LENGTH=395	IPR003758 (Tetraacyldisaccharide 4'-kinase)	GO:0005524 (ATP binding), GO:0009029 (tetraacyldisaccharide 4'-kinase activity), GO:0009245 (lipid A biosynthetic process)
Niben101Scf08643g01003.1	sp|Q652L2|HIRA_ORYSJ	***-	Protein HIRA	IPR011494 (TUP1-like enhancer of split), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08937g00013.1	sp|P38416|LOXB_SOLLC	*-*-	Linoleate 9S-lipoxygenase B	IPR001024 (PLAT/LH2 domain), IPR013819 (Lipoxygenase, C-terminal)	GO:0005515 (protein binding), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08680g00002.1	sp|Q9LF33|UGDH3_ARATH	****	UDP-glucose 6-dehydrogenase 3	IPR017476 (UDP-glucose/GDP-mannose dehydrogenase)	GO:0003979 (UDP-glucose 6-dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00246g06015.1	gb|ABA95403.1|	--*-	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]		
Niben101Scf04113g11012.1	sp|F4HQX1|JAL3_ARATH	***-	Jacalin-related lectin 3	IPR001229 (Jacalin-like lectin domain)	
Niben101Scf02262g01021.1	sp|Q9XFT3|PSBQ1_ARATH	****	Oxygen-evolving enhancer protein 3-1, chloroplastic	IPR008797 (Photosystem II PsbQ, oxygen evolving complex), IPR023222 (PsbQ-like domain)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf00854g08068.1	AT2G07674.1	*-*-	Unknown conserved protein LENGTH=251		
Niben101Scf00961g04010.1	ref|XP_002341466.1|	*-**	integral membrane protein, Mpv17/PMP22 family, putative [Talaromyces stipitatus ATCC 10500] gb|EED24079.1| integral membrane protein, Mpv17/PMP22 family, putative [Talaromyces stipitatus ATCC 10500]	IPR007248 (Mpv17/PMP22)	GO:0016021 (integral component of membrane)
Niben101Scf01013g01003.1	sp|P81392|MYB06_ANTMA	*-*-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07489g01002.1	sp|B6J9D8|RL25_COXB1	***-	50S ribosomal protein L25	IPR011035 (Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain)	GO:0006412 (translation)
Niben101Scf00369g18019.1	sp|P42791|RL182_ARATH	***-	60S ribosomal protein L18-2	IPR000039 (Ribosomal protein L18e), IPR021131 (Ribosomal protein L18e/L15P)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf18343g00013.1	sp|O65837|LCYE_SOLLC	***-	Lycopene epsilon cyclase, chloroplastic	IPR008671 (Lycopene cyclase-type, FAD-binding)	GO:0016117 (carotenoid biosynthetic process), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen)
Niben101Scf09785g00011.1	sp|P40228|CSK2B_ARATH	****	Casein kinase II subunit beta	IPR000704 (Casein kinase II, regulatory subunit)	GO:0005956 (protein kinase CK2 complex), GO:0019887 (protein kinase regulator activity)
Niben101Scf25520g00004.1	sp|Q2SBP0|DAPE_HAHCH	*-*-	Succinyl-diaminopimelate desuccinylase	IPR002933 (Peptidase M20)	GO:0004046 (aminoacylase activity), GO:0005737 (cytoplasm), GO:0006520 (cellular amino acid metabolic process), GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf00597g05012.1	gb|ABF95303.1|	*-*-	expressed protein [Oryza sativa Japonica Group]	IPR022212 (Protein of unknown function DUF3741), IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf02093g00004.1	sp|Q9ZSD4|SY121_ARATH	***-	Syntaxin-121	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf08143g00006.1	sp|Q8TRR0|RS11_METAC	***-	30S ribosomal protein S11	IPR001971 (Ribosomal protein S11)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08419g01038.1	AT4G17020.3	***-	transcription factor-related LENGTH=482	IPR004598 (Transcription factor TFIIH subunit p52/Tfb2)	GO:0000439 (core TFIIH complex), GO:0004003 (ATP-dependent DNA helicase activity), GO:0005634 (nucleus), GO:0006289 (nucleotide-excision repair)
Niben101Scf01691g00006.1	sp|Q6NXT1|ANR54_HUMAN	*-*-	Ankyrin repeat domain-containing protein 54	IPR011009 (Protein kinase-like domain), IPR020683 (Ankyrin repeat-containing domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00606g02018.1	sp|Q72MG4|IPYR_LEPIC	****	Inorganic pyrophosphatase	IPR008162 (Inorganic pyrophosphatase)	GO:0000287 (magnesium ion binding), GO:0004427 (inorganic diphosphatase activity), GO:0005737 (cytoplasm), GO:0006796 (phosphate-containing compound metabolic process)
Niben101Scf01189g00004.1	ref|XP_002510336.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF52523.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf11188g00002.1	AT4G19950.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=321		
Niben101Scf00596g02002.1	gb|AAQ09994.1|	***-	S2 self-incompatibility locus-linked pollen 3.2 protein [Petunia integrifolia subsp. inflata]		
Niben101Scf05680g00021.1	sp|Q9ZUT5|PP191_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf15604g00025.1	emb|CEF97130.1|	--*-	Zinc finger, CCCH-type [Ostreococcus tauri]	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf06999g00009.1	AT2G39570.1	***-	ACT domain-containing protein LENGTH=411	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf08546g05004.1	sp|Q9LW48|ERF5_NICSY	****	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf13622g01020.1	sp|P31237|ACCO_ACTDE	***-	1-aminocyclopropane-1-carboxylate oxidase	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf00163g12011.1	sp|Q8VYB1|MED31_ARATH	****	Mediator of RNA polymerase II transcription subunit 31	IPR008831 (Mediator complex, subunit Med31)	GO:0001104 (RNA polymerase II transcription cofactor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0016592 (mediator complex)
Niben101Scf07255g01018.1	AT2G21710.1	****	Mitochondrial transcription termination factor family protein LENGTH=641	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00266g00001.1	sp|Q9HCK8|CHD8_HUMAN	--**	Chromodomain-helicase-DNA-binding protein 8	IPR000330 (SNF2-related), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf02982g01015.1	dbj|BAB02449.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]	IPR004332 (Transposase, MuDR, plant), IPR018289 (MULE transposase domain)	
Niben101Scf02798g01045.1	emb|CDY70488.1|	*-*-	BnaUnng03880D, partial [Brassica napus]		
Niben101Scf02621g00018.1	gb|AID60149.1|	***-	At4g33800-like protein [Brassica napus]		
Niben101Scf00742g00012.1	emb|CDY19340.1|	***-	BnaC05g08490D [Brassica napus]		
Niben101Scf11225g00017.1	gb|AET00103.2|	***-	ABC-type transport system protein [Medicago truncatula]	IPR003399 (Mammalian cell entry-related)	
Niben101Scf08238g00004.1	ref|XP_003638717.1|	--*-	Cell wall-associated hydrolase [Medicago truncatula]		
Niben101Scf00687g05002.1	sp|P81391|MYB05_ANTMA	*-*-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08347g01002.1	sp|Q9LUA3|NIMI2_ARATH	-**-	Protein NIM1-INTERACTING 2		
Niben101Scf05306g02016.1	emb|CDY52756.1|	*-*-	BnaA07g37710D [Brassica napus]		
Niben101Scf17243g01017.1	sp|B2AG25|GATA_CUPTR	***-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf02164g04007.1	sp|Q9H6H4|REEP4_HUMAN	--*-	Receptor expression-enhancing protein 4	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf07440g01012.1	sp|O81242|RHL1_ARATH	***-	DNA-binding protein RHL1		
Niben101Scf01689g01002.1	ref|XP_002524001.1|	-**-	calcium ion binding protein, putative [Ricinus communis] gb|EEF38369.1| calcium ion binding protein, putative [Ricinus communis]		
Niben101Scf01761g00015.1	sp|Q6IRP4|ABHDD_XENLA	*-*-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05554g09012.1	AT1G77720.1	****	putative protein kinase 1 LENGTH=777	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01494g02026.1	AT5G04910.1	***-	unknown protein; Has 71 Blast hits to 71 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). LENGTH=222		
Niben101Scf06916g01025.1	ref|XP_002519145.1|	*-**	DNA binding protein, putative [Ricinus communis] gb|EEF43356.1| DNA binding protein, putative [Ricinus communis]	IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding)
Niben101Scf00420g05006.1	AT3G09570.1	***-	Lung seven transmembrane receptor family protein LENGTH=439	IPR009637 (Transmembrane receptor, eukaryota)	GO:0016021 (integral component of membrane)
Niben101Scf02450g03009.1	sp|Q5RAZ5|NSE1_PONAB	***-	Non-structural maintenance of chromosomes element 1 homolog	IPR011513 (Non-structural maintenance of chromosomes element 1), IPR014857 (Zinc finger, RING-like)	GO:0006281 (DNA repair), GO:0030915 (Smc5-Smc6 complex)
Niben101Scf08804g03034.1	ref|XP_003604291.1|	***-	F-box/LRR-repeat protein [Medicago truncatula]	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf01785g09001.1	sp|Q94GB1|PUP2_ARATH	--*-	Purine permease 2		
Niben101Scf19479g00003.1	sp|Q9LVQ5|PP432_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03432g01018.1			Unknown protein		
Niben101Scf11383g00009.1	AT5G27980.1	***-	Seed maturation protein LENGTH=192	IPR007011 (Seed maturation protein)	
Niben101Scf00083g04049.1			Unknown protein		
Niben101Scf00063g08002.1	sp|O96952|THIO_GEOCY	*-*-	Thioredoxin	IPR005746 (Thioredoxin), IPR012336 (Thioredoxin-like fold)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03202g03003.1	sp|Q9LMN6|WAK4_ARATH	--*-	Wall-associated receptor kinase 4	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf12383g01026.1	ref|XP_007025231.1|	--*-	DNA-binding bromodomain-containing protein, putative isoform 3 [Theobroma cacao] gb|EOY27853.1| DNA-binding bromodomain-containing protein, putative isoform 3 [Theobroma cacao]		
Niben101Scf00578g04002.1	sp|Q8GXT3|BH123_ARATH	*-*-	Transcription factor bHLH123	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf11895g03021.1	emb|CDY68401.1|	***-	BnaCnng58860D [Brassica napus]	IPR021924 (Protein of unknown function DUF3537)	
Niben101Scf05818g00016.1	ref|XP_003597655.1|	***-	Protein CHUP1 [Medicago truncatula]		
Niben101Scf03263g08007.1	AT4G28703.1	***-	RmlC-like cupins superfamily protein LENGTH=107	IPR014710 (RmlC-like jelly roll fold)	
Niben101Ctg12198g00002.1	sp|O04883|PLDA1_PIMBR	*-*-	Phospholipase D alpha 1	IPR015679 (Phospholipase D family)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf12443g02009.1	sp|Q8S8F5|EF4L3_ARATH	***-	Protein ELF4-LIKE 3	IPR009741 (Protein of unknown function DUF1313)	
Niben101Scf01072g03005.1	sp|Q1ICA8|CLPP_PSEE4	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00854g05034.1	gb|AHA47101.1|	*-*-	ATPase subunit 8 (mitochondrion) [Amborella trichopoda]	IPR003319 (ATP synthase YMF19-like, N-terminal)	
Niben101Scf02621g03001.1	ref|XP_003614078.1|	--*-	HGWP repeat containing protein-like protein [Medicago truncatula]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf00215g11016.1			Unknown protein		
Niben101Scf02393g01003.1	sp|Q13310|PABP4_HUMAN	*-**	Polyadenylate-binding protein 4	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf10796g00013.1	AT4G26555.1	***-	FKBP-like peptidyl-prolyl cis-trans isomerase family protein LENGTH=207	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf07072g00001.1	sp|P82353|NLTP2_PRUAR	***-	Non-specific lipid-transfer protein 2	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf01157g01018.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf00141g01007.1	sp|P27880|HSP12_MEDSA	***-	18.2 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf01150g01011.1	sp|Q9FMX3|STP11_ARATH	--*-	Sugar transport protein 11	IPR020846 (Major facilitator superfamily domain)	
Niben101Scf05955g03067.1	sp|P55858|RL7A_SULSO	--*-	50S ribosomal protein L7Ae	IPR029064 (50S ribosomal protein L30e-like)	
Niben101Scf04741g05004.1	sp|Q3Y4F4|CFI_CANGE	****	Chalcone--flavonone isomerase	IPR016087 (Chalcone isomerase)	GO:0009813 (flavonoid biosynthetic process), GO:0016872 (intramolecular lyase activity), GO:0045430 (chalcone isomerase activity)
Niben101Scf13206g02016.1	sp|O67066|FTSY_AQUAE	***-	Signal recognition particle receptor FtsY	IPR004390 (Signal-recognition particle receptor FtsY), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0006184 (GTP catabolic process), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane)
Niben101Scf00327g00020.1	gb|ABK51384.1|	--*-	IMP dehydrogenase/GMP reductase [Hevea brasiliensis]		
Niben101Scf17849g02003.1	AT3G45640.1	****	mitogen-activated protein kinase 3 LENGTH=370	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04314g00002.1			Unknown protein		
Niben101Scf00202g00004.1	ref|XP_002524703.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF37722.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05341g03002.1	ref|XP_007031719.1|	*-*-	Calcium-binding site, putative [Theobroma cacao] gb|EOY02645.1| Calcium-binding site, putative [Theobroma cacao]		
Niben101Scf04778g00002.1	sp|O76173|RAB1C_DICDI	***-	Ras-related protein Rab-1C	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf06396g00011.1	sp|Q9SDG8|AGO4A_ORYSJ	*-*-	Protein argonaute 4A	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf06715g02006.1	AT4G36950.1	****	mitogen-activated protein kinase kinase kinase 21 LENGTH=336	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01012g02008.1	gb|AAC97933.1|	*-*-	disease resistance protein [Solanum lycopersicum]		
Niben101Scf00966g04002.1	AT1G26850.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=616	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf04419g02008.1	ref|WP_028617134.1|	--*-	LysR family transcriptional regulator [Pseudomonas sp. 2-92(2010)]		
Niben101Scf01094g03014.1	sp|Q8LDC8|ERF92_ARATH	*-**	Ethylene-responsive transcription factor 1B	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00024g00011.1	emb|CDX73116.1|	***-	BnaC06g35640D [Brassica napus]	IPR007656 (Zein-binding domain)	
Niben101Scf04556g01008.1	AT2G44310.1	****	Calcium-binding EF-hand family protein LENGTH=142	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02001g02015.1	gb|AES59797.2|	*-*-	LA-related protein 6 LA RNA-binding domain protein [Medicago truncatula]	IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf09153g05036.1	sp|Q9LN01|PPR21_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf02085g14003.1	sp|Q08507|ACCO3_PETHY	***-	1-aminocyclopropane-1-carboxylate oxidase 3	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf11670g02002.1	emb|CDY62168.1|	***-	BnaC08g49020D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf00163g17005.1	sp|B6IS04|MSRA_RHOCS	****	Peptide methionine sulfoxide reductase MsrA	IPR002569 (Peptide methionine sulphoxide reductase MsrA), IPR028427 (Peptide methionine sulfoxide reductase)	GO:0006979 (response to oxidative stress), GO:0008113 (peptide-methionine (S)-S-oxide reductase activity), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0030091 (protein repair), GO:0055114 (oxidation-reduction process)
Niben101Scf07383g04013.1			Unknown protein		
Niben101Scf02195g07004.1	gb|ABW81177.1|	--*-	gag non-LTR retrotransposase [Arabidopsis cebennensis]		
Niben101Scf06628g00002.1	sp|Q86UB9|TM135_HUMAN	--*-	Transmembrane protein 135		
Niben101Scf03937g04002.1	sp|Q93ZB9|FACR3_ARATH	*-**	Fatty acyl-CoA reductase 3	IPR013120 (Male sterility, NAD-binding), IPR026055 (Fatty acyl-CoA reductase)	GO:0080019 (fatty-acyl-CoA reductase (alcohol-forming) activity)
Niben101Scf09123g02006.1	AT3G09100.2	****	mRNA capping enzyme family protein LENGTH=672	IPR012310 (DNA ligase, ATP-dependent, central), IPR017074 (mRNA capping enzyme, bifunctional), IPR029021 (Protein-tyrosine phosphatase-like)	GO:0003910 (DNA ligase (ATP) activity), GO:0004484 (mRNA guanylyltransferase activity), GO:0004651 (polynucleotide 5'-phosphatase activity), GO:0004725 (protein tyrosine phosphatase activity), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0006310 (DNA recombination), GO:0006370 (7-methylguanosine mRNA capping), GO:0006397 (mRNA processing), GO:0006470 (protein dephosphorylation), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf10516g00005.1	sp|Q8RY89|PI5K8_ARATH	*-*-	Phosphatidylinositol 4-phosphate 5-kinase 8	IPR003008 (Tubulin/FtsZ, GTPase domain), IPR003409 (MORN motif), IPR008280 (Tubulin/FtsZ, C-terminal)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0006184 (GTP catabolic process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf09847g00011.1	emb|CDY24256.1|	***-	BnaC03g42290D [Brassica napus]		
Niben101Scf11410g00003.1	gb|ACF19785.1|	*-**	NAC transcription factor [Nicotiana tabacum]	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00209g00009.1	sp|Q00IB6|CPL4_ARATH	****	RNA polymerase II C-terminal domain phosphatase-like 4	IPR001357 (BRCT domain), IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)	GO:0004721 (phosphoprotein phosphatase activity), GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf00629g02006.1	sp|Q8CE22|DMTF1_MOUSE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01402g02035.1	sp|Q8LSZ4|E2FE_ARATH	*-*-	E2F transcription factor-like E2FE		
Niben101Scf02252g01035.1	sp|Q652P9|GL93_ORYSJ	*-*-	Germin-like protein 9-3	IPR001810 (F-box domain), IPR014710 (RmlC-like jelly roll fold)	GO:0005515 (protein binding), GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf00340g06004.1	emb|CCQ71680.1|	*-*-	Ycf1 (chloroplast) [Salvia miltiorrhiza]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf04132g01002.1	sp|Q9ZV88|BEH4_ARATH	***-	BES1/BZR1 homolog protein 4	IPR008540 (BZR1, transcriptional repressor)	
Niben101Scf18745g00019.1	sp|Q74IM9|FMT_LACJO	****	Methionyl-tRNA formyltransferase	IPR011034 (Formyl transferase, C-terminal-like), IPR015518 (Methionine tRNA Formyltransferase-like)	GO:0003824 (catalytic activity), GO:0004479 (methionyl-tRNA formyltransferase activity), GO:0009058 (biosynthetic process), GO:0016742 (hydroxymethyl-, formyl- and related transferase activity), GO:0071951 (conversion of methionyl-tRNA to N-formyl-methionyl-tRNA)
Niben101Scf05627g00007.1	emb|CDY12426.1|	--*-	BnaC08g09150D [Brassica napus]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf10344g01007.1	AT3G23160.1	***-	Protein of unknown function (DUF668) LENGTH=531	IPR007700 (Protein of unknown function DUF668), IPR021864 (Protein of unknown function DUF3475)	
Niben101Scf04473g05012.1	emb|CDY42363.1|	***-	BnaA09g15980D [Brassica napus]		
Niben101Scf09028g00036.1	AT3G26300.1	*-*-	cytochrome P450, family 71, subfamily B, polypeptide 34 LENGTH=500	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01761g08001.1	sp|P93194|RPK1_IPONI	****	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02652g01030.1	sp|Q2RNG2|GLND_RHORT	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf08567g00006.1	sp|Q9BBR5|PSBE_LOTJA	***-	Cytochrome b559 subunit alpha	IPR006217 (Photosystem II cytochrome b559, alpha subunit)	GO:0009523 (photosystem II), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf03714g00012.1	sp|O49399|PP321_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf05188g01012.1			Unknown protein		
Niben101Scf05928g00007.1	AT3G01090.2	*-*-	SNF1 kinase homolog 10 LENGTH=535	IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	
Niben101Scf13036g00009.1	AT5G03720.1	****	heat shock transcription factor A3 LENGTH=412	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02145g05020.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01740g10003.1	sp|Q5PQS6|SMG9_RAT	***-	Protein SMG9	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf05343g02016.1	sp|Q0VGW4|ERMP1_XENLA	*-*-	Endoplasmic reticulum metallopeptidase 1	IPR007484 (Peptidase M28)	
Niben101Scf08250g02010.1	sp|P59110|SENP1_MOUSE	*-*-	Sentrin-specific protease 1	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01191g06011.1	sp|Q0J035|PANK2_ORYSJ	*-*-	Pantothenate kinase 2	IPR002791 (Domain of unknown function DUF89)	
Niben101Scf14431g00001.1	AT4G07410.1	***-	Transducin family protein / WD-40 repeat family protein LENGTH=815	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf00715g01008.1	emb|CDX79350.1|	--*-	BnaC06g19530D [Brassica napus]		
Niben101Scf09953g00003.1	sp|P32397|PPOX_BACSU	--*-	Protoporphyrinogen oxidase	IPR002937 (Amine oxidase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01326g08022.1	AT5G62540.1	***-	ubiquitin-conjugating enzyme 3 LENGTH=150	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf04701g02003.1	AT4G02900.1	***-	ERD (early-responsive to dehydration stress) family protein LENGTH=785	IPR003864 (Domain of unknown function DUF221)	GO:0016020 (membrane)
Niben101Scf03875g00007.1	AT1G69380.1	***-	Protein of unknown function (DUF155) LENGTH=373	IPR003734 (Protein of unknown function DUF155)	
Niben101Scf02213g00001.1	emb|CDX86917.1|	*-*-	BnaC03g51870D [Brassica napus]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf01115g01006.1			Unknown protein		
Niben101Scf06004g00017.1	sp|Q9SH60|PP103_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf12202g00015.1	sp|Q93YQ1|RTOR1_ARATH	****	Regulatory-associated protein of TOR 1	IPR004083 (Regulatory associated protein of TOR), IPR029347 (Raptor N-terminal CASPase-like domain)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0031929 (TOR signaling), GO:0031931 (TORC1 complex)
Niben101Scf03856g06021.1	sp|Q9FH18|WIP2_ARATH	*-*-	WPP domain-interacting protein 2		
Niben101Scf00493g00020.1	sp|P94040|GL31_ARATH	***-	Germin-like protein subfamily 3 member 1	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf03036g02010.1	sp|Q9C5H6|CSTR3_ARATH	***-	CMP-sialic acid transporter 3	IPR007271 (Nucleotide-sugar transporter)	GO:0000139 (Golgi membrane), GO:0005351 (sugar:proton symporter activity), GO:0008643 (carbohydrate transport), GO:0016021 (integral component of membrane)
Niben101Scf00854g10053.1	gb|ABU84872.2|	--*-	RNA-dependent RNA polymerase [Botrytis cinerea mitovirus 1 S]	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf11756g03010.1			Unknown protein		
Niben101Scf02538g05001.1			Unknown protein		
Niben101Scf01802g02002.1			Unknown protein		
Niben101Scf01980g02002.1	sp|Q12725|EXG_YARLI	***-	Glucan 1,3-beta-glucosidase	IPR008999 (Actin cross-linking), IPR010431 (Fascin), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0007015 (actin filament organization), GO:0051015 (actin filament binding)
Niben101Scf04290g01001.1	AT1G69690.1	*-*-	TCP family transcription factor LENGTH=325	IPR005333 (Transcription factor, TCP)	
Niben101Scf06678g04009.1	sp|Q40901|DEF_PETIN	***-	Defensin-like protein	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf05848g04005.1	sp|Q9SE94|MTHR1_MAIZE	****	Methylenetetrahydrofolate reductase 1	IPR003171 (Methylenetetrahydrofolate reductase), IPR029041 (FAD-linked oxidoreductase-like)	GO:0004489 (methylenetetrahydrofolate reductase (NAD(P)H) activity), GO:0006555 (methionine metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf00245g04009.1	sp|Q5D869|NRPE1_ARATH	--*-	DNA-directed RNA polymerase V subunit 1	IPR015801 (Copper amine oxidase, N2/N3-terminal), IPR021602 (Protein of unknown function DUF3223)	GO:0005507 (copper ion binding), GO:0009308 (amine metabolic process), GO:0048038 (quinone binding)
Niben101Scf11895g03022.1	sp|O04940|CDS1_SOLTU	****	Phosphatidate cytidylyltransferase	IPR000374 (Phosphatidate cytidylyltransferase)	GO:0004605 (phosphatidate cytidylyltransferase activity), GO:0016020 (membrane), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04052g03012.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01531g03011.1	AT5G08120.1	***-	movement protein binding protein 2C LENGTH=326		
Niben101Scf05082g00002.1	sp|Q58FS3|RAD_ANTMA	***-	Transcription factor RADIALIS	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01690g00009.1	sp|Q09925|LCB2_SCHPO	*-*-	Serine palmitoyltransferase 2	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf15532g00004.1	sp|Q9FJU9|E1313_ARATH	***-	Glucan endo-1,3-beta-glucosidase 13	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf05645g05008.1	sp|Q9C5Y4|SMC21_ARATH	***-	Structural maintenance of chromosomes protein 2-1	IPR003395 (RecF/RecN/SMC, N-terminal), IPR010935 (SMCs flexible hinge), IPR024704 (Structural maintenance of chromosomes protein), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000796 (condensin complex), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005694 (chromosome), GO:0007076 (mitotic chromosome condensation), GO:0051276 (chromosome organization)
Niben101Scf06424g02031.1	sp|A6VNV7|SYN_ACTSZ	****	Asparagine--tRNA ligase	IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004816 (asparagine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006421 (asparaginyl-tRNA aminoacylation)
Niben101Scf01634g04011.1	AT3G10150.1	***-	purple acid phosphatase 16 LENGTH=367	IPR011230 (Phosphoesterase At2g46880), IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf14741g00004.1	sp|Q5RAJ5|STK36_PONAB	*-**	Serine/threonine-protein kinase 36	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08247g00011.1	sp|Q9LYZ9|PP362_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05329g03001.1	gb|ABA95265.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf03577g01001.1	sp|Q9NGQ2|KIF1_DICDI	*-**	Kinesin-related protein 1	IPR001752 (Kinesin motor domain), IPR010544 (Kinesin-related conserved domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf02081g03012.1	sp|P31531|1A1C_SOYBN	***-	1-aminocyclopropane-1-carboxylate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01523g00021.1	sp|O23086|ALMTA_ARATH	****	Aluminum-activated malate transporter 10	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf15689g00021.1	sp|P92949|FRO2_ARATH	****	Ferric reduction oxidase 2	IPR001834 (NADH:cytochrome b5 reductase (CBR)), IPR013121 (Ferric reductase, NAD binding), IPR013130 (Ferric reductase transmembrane component-like domain), IPR017927 (Ferredoxin reductase-type FAD-binding domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf09510g00017.1	gb|AES68513.2|	-**-	bacterial trigger factor protein [Medicago truncatula]		
Niben101Scf03376g04001.1	sp|B5XNF8|UNG_KLEP3	--*-	Uracil-DNA glycosylase		
Niben101Scf00949g02005.1	AT3G20790.1	*-*-	NAD(P)-binding Rossmann-fold superfamily protein LENGTH=355	IPR016040 (NAD(P)-binding domain)	
Niben101Scf00793g07004.1	sp|O22714|PPR86_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02553g02006.1	sp|Q969T9|WBP2_HUMAN	***-	WW domain-binding protein 2		
Niben101Scf03298g04008.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07593g00006.1			Unknown protein		
Niben101Scf05306g02017.1	ref|NP_568106.1|	***-	rib [Arabidopsis thaliana]	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding)
Niben101Scf00109g10003.1	sp|P49730|RIR2_TOBAC	****	Ribonucleoside-diphosphate reductase small chain	IPR000358 (Ribonucleotide reductase small subunit), IPR009078 (Ferritin-like superfamily)	GO:0009186 (deoxyribonucleoside diphosphate metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00561g00002.1	AT2G22590.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=470	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf00584g03003.1	gb|ABF95292.1|	*-*-	transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa Japonica Group]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf02110g00011.1	sp|Q64323|PIGA_MOUSE	*-**	N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein	IPR001296 (Glycosyl transferase, family 1), IPR028098 (Glycosyltransferase subfamily 4, N-terminal domain)	GO:0009058 (biosynthetic process)
Niben101Scf01661g01020.1	AT1G73990.1	****	signal peptide peptidase LENGTH=677	IPR004634 (Peptidase S49, protease IV), IPR029045 (ClpP/crotonase-like domain)	GO:0006465 (signal peptide processing), GO:0006508 (proteolysis), GO:0008233 (peptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf02156g14004.1	sp|Q7WRA5|RL30_BORBR	-***	50S ribosomal protein L30	IPR005996 (Ribosomal protein L30, bacterial-type), IPR016082 (Ribosomal protein L30, ferredoxin-like fold domain)	GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf08546g05005.1	sp|O80341|EF102_ARATH	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04417g00002.1	AT1G79650.4	****	Rad23 UV excision repair protein family LENGTH=395	IPR004806 (UV excision repair protein Rad23), IPR009060 (UBA-like), IPR029071 (Ubiquitin-related domain)	GO:0003684 (damaged DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006289 (nucleotide-excision repair), GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
Niben101Scf01494g04008.1	sp|Q2KID7|OSTC_BOVIN	***-	Oligosaccharyltransferase complex subunit OSTC	IPR021149 (Oligosaccharyl transferase complex, subunit OST3/OST6)	
Niben101Scf07827g00015.1	emb|CDY54374.1|	***-	BnaAnng13050D [Brassica napus]		
Niben101Scf02262g00001.1	sp|Q94JL3|BH112_ARATH	*-*-	Transcription factor bHLH112		
Niben101Scf01357g00002.1	AT2G36000.1	****	Mitochondrial transcription termination factor family protein LENGTH=333	IPR003690 (Mitochodrial transcription termination factor)	GO:0003690 (double-stranded DNA binding), GO:0005739 (mitochondrion), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf05917g02002.1	sp|Q8S9D1|PP395_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf08724g03004.1	ref|NP_001042061.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf02803g04007.1	sp|P32826|SCP49_ARATH	****	Serine carboxypeptidase-like 49	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00581g03014.1			Unknown protein		
Niben101Scf03824g02005.1	sp|Q6YYA3|CRS1_ORYSJ	***-	Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf01642g01013.1	sp|Q8WNV7|DHRS4_PIG	****	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf02249g00013.1	ref|NP_190526.1|	--*-	protein RESPONSE TO LOW SULFUR 3 [Arabidopsis thaliana] emb|CAB62461.1| hypothetical protein [Arabidopsis thaliana] dbj|BAC42759.1| unknown protein [Arabidopsis thaliana] gb|AAP04108.1| unknown protein [Arabidopsis thaliana] gb|AEE78558.1| response to low sulfur 3 protein [Arabidopsis thaliana]		
Niben101Scf03790g01003.1	emb|CDY49624.1|	*-*-	BnaCnng17760D [Brassica napus]		
Niben101Scf27945g00015.1	sp|Q9FFI5|NAC86_ARATH	*-*-	NAC domain-containing protein 86	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02451g00009.1	sp|F6HH45|TRM52_VITVI	****	tRNA (guanine(37)-N1)-methyltransferase 2	IPR025792 (tRNA (guanine(37)-N(1))-methyltransferase, eukaryotic), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0009019 (tRNA (guanine-N1-)-methyltransferase activity), GO:0030488 (tRNA methylation)
Niben101Scf01320g00004.1	sp|Q8VEK0|CC50A_MOUSE	***-	Cell cycle control protein 50A	IPR005045 (CDC50/LEM3 family)	GO:0016020 (membrane)
Niben101Scf03851g02020.1	ref|WP_017629858.1|	--*-	outer membrane biogenesis protein BamB [Vibrio sp. 624788]	IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily)	
Niben101Scf07261g00001.1	sp|Q8X8N8|PYRC_ECO57	****	Dihydroorotase	IPR004721 (Dihydroorotase homodimeric type)	GO:0004151 (dihydroorotase activity), GO:0016787 (hydrolase activity), GO:0016812 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides), GO:0019856 (pyrimidine nucleobase biosynthetic process)
Niben101Scf16022g03002.1			Unknown protein		
Niben101Scf00479g03021.1	sp|B9LNJ8|HIS8_HALLT	*-**	Histidinol-phosphate aminotransferase	IPR021178 (Tyrosine transaminase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf08304g05014.1			Unknown protein		
Niben101Scf09065g00004.1	sp|Q9FIK1|Y5780_ARATH	*-*-	BTB/POZ domain-containing protein	IPR027356 (NPH3 domain), IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0009958 (positive gravitropism)
Niben101Scf03894g02023.1	sp|Q8WU67|ABHD3_HUMAN	*-*-	Abhydrolase domain-containing protein 3	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07162g03018.1			Unknown protein		
Niben101Scf02601g00002.1	sp|Q7SXW3|LRC40_DANRE	*-*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat)	GO:0005515 (protein binding)
Niben101Scf00211g00011.1	sp|Q2JL51|GATA_SYNJB	***-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf02949g00001.1	sp|A4VS82|YIDC_PSEU5	*-**	Membrane protein insertase YidC	IPR001708 (Membrane insertase OXA1/ALB3/YidC), IPR028055 (Membrane insertase YidC/Oxa1, C-terminal)	GO:0016021 (integral component of membrane), GO:0051205 (protein insertion into membrane)
Niben101Scf00188g03002.1	AT1G52800.1	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=314	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf06397g04016.1	sp|A4G1V2|SYV_HERAR	****	Valine--tRNA ligase	IPR002303 (Valine-tRNA ligase), IPR009080 (Aminoacyl-tRNA synthetase, class 1a, anticodon-binding)	GO:0000166 (nucleotide binding), GO:0002161 (aminoacyl-tRNA editing activity), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004832 (valine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006438 (valyl-tRNA aminoacylation)
Niben101Scf02442g00003.1	sp|Q8VYI9|NLTL5_ARATH	--*-	Non-specific lipid-transfer protein-like protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf05664g04002.1	AT2G33700.1	***-	Protein phosphatase 2C family protein LENGTH=380	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf09512g04015.1			Unknown protein		
Niben101Scf03595g10008.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00925g01002.1	emb|CDX74218.1|	--*-	BnaA03g28290D [Brassica napus]		
Niben101Scf04207g01002.1	AT5G19660.1	*-*-	SITE-1 protease LENGTH=1038	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06305g03005.1	sp|Q9FFR9|CHX18_ARATH	****	Cation/H(+) antiporter 18	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf04899g04013.1	dbj|BAF47279.1|	*-*-	lectin-receptor like protein kinase 3 [Nicotiana tabacum]		
Niben101Scf05552g06005.1	sp|Q9SD82|RFA1B_ARATH	--*-	Replication protein A 70 kDa DNA-binding subunit B	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf06357g02001.1	gb|KFB86090.1|	***-	3-beta hydroxysteroid dehydrogenase [Calothrix sp. 336/3]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf01497g05008.1	sp|Q6DR20|FB110_ARATH	***-	F-box protein		
Niben101Scf10196g00001.1	ref|XP_007031864.1|	--*-	Plant cadmium resistance 11, putative [Theobroma cacao] gb|EOY02790.1| Plant cadmium resistance 11, putative [Theobroma cacao]		
Niben101Scf05391g02002.1	AT5G46070.1	****	Guanylate-binding family protein LENGTH=1082	IPR003191 (Guanylate-binding protein, C-terminal), IPR015894 (Guanylate-binding protein, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf02060g01013.1	AT3G53520.4	***-	UDP-glucuronic acid decarboxylase 1 LENGTH=458	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf00059g01005.1	AT3G09520.1	*-**	exocyst subunit exo70 family protein H4 LENGTH=628	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf07638g04005.1	sp|A7EIX7|SUB2_SCLS1	****	ATP-dependent RNA helicase sub2	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf07842g00011.1	sp|A2AWA9|RBGP1_MOUSE	--**	Rab GTPase-activating protein 1	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf12321g00006.1	gb|AAY43976.1|	***-	glycine rich protein-interacting protein [Nicotiana tabacum]		
Niben101Scf00039g01010.1	sp|Q86UK7|ZN598_HUMAN	*-**	Zinc finger protein 598	IPR001841 (Zinc finger, RING-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04457g04025.1	sp|Q766C2|NEP2_NEPGR	*-**	Aspartic proteinase nepenthesin-2	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02601g06007.1	gb|ACG69536.1|	*-*-	caleosin CLO1-4 [Brassica napus]	IPR007736 (Caleosin)	
Niben101Scf07226g01001.1	AT2G35605.1	***-	SWIB/MDM2 domain superfamily protein LENGTH=109	IPR003121 (SWIB/MDM2 domain)	GO:0005515 (protein binding)
Niben101Scf07140g00007.1	sp|P10984|ACT2_CAEEL	***-	Actin-2	IPR004000 (Actin family)	
Niben101Scf02763g03011.1	AT2G05940.1	****	Protein kinase superfamily protein LENGTH=462	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06154g03017.1	sp|A4QJ96|PSBA_AETCO	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf01998g06003.1	sp|O22342|ADT1_GOSHI	****	ADP,ATP carrier protein 1, mitochondrial	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0005215 (transporter activity), GO:0005743 (mitochondrial inner membrane), GO:0006810 (transport), GO:0055085 (transmembrane transport)
Niben101Scf00885g15006.1	ref|XP_002532981.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF29405.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04639g15003.1	sp|Q9SIV7|FB108_ARATH	*-*-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf02828g04007.1	sp|Q39FE8|CLPP_BURL3	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03238g02003.1	sp|P31531|1A1C_SOYBN	***-	1-aminocyclopropane-1-carboxylate synthase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf15817g00008.1	sp|Q6EW36|PSBE_NYMAL	***-	Cytochrome b559 subunit alpha	IPR003372 (Photosystem II PsbL), IPR006217 (Photosystem II cytochrome b559, alpha subunit)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf03584g05009.1	AT5G45560.1	****	Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein LENGTH=719	IPR002913 (START domain), IPR009769 (Domain of unknown function DUF1336), IPR011993 (Pleckstrin homology-like domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf04654g04023.1			Unknown protein		
Niben101Scf12708g00001.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06028g00006.1	sp|A7NY33|PER4_VITVI	*-**	Peroxidase 4	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00603g03020.1	sp|Q9T096|YIPL6_ARATH	***-	Protein yippee-like	IPR004910 (Yippee/Mis18)	
Niben101Scf03962g01005.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04033g02013.1			Unknown protein		
Niben101Scf06789g00006.1	sp|Q2QQS5|CCT14_ORYSJ	*-**	Cyclin-T1-4	IPR015429 (Cyclin C/H/T/L)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0019901 (protein kinase binding)
Niben101Scf37163g00001.1	sp|Q8VYI9|NLTL5_ARATH	--*-	Non-specific lipid-transfer protein-like protein	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf06019g01004.1			Unknown protein		
Niben101Scf02063g05005.1	AT5G43400.1	***-	Uncharacterised conserved protein UCP015417, vWA LENGTH=655	IPR011205 (Uncharacterised conserved protein UCP015417, vWA), IPR024553 (Domain of unknown function DUF2828)	
Niben101Scf05099g01019.1	sp|Q5M786|WDR5_XENTR	*-*-	WD repeat-containing protein 5	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf15467g02004.1	sp|O48723|PLP2_ARATH	***-	Patatin-like protein 2	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf03644g03008.1	ref|NP_001052968.1|	*-*-	product [Oryza sativa Japonica Group]	IPR010417 (Embryo-specific 3)	GO:0005515 (protein binding)
Niben101Scf06517g00018.1	sp|Q3UDK1|TRAD1_MOUSE	*-**	TRAF-type zinc finger domain-containing protein 1	IPR001293 (Zinc finger, TRAF-type)	GO:0008270 (zinc ion binding)
Niben101Scf08328g00010.1	AT5G20140.2	*-*-	SOUL heme-binding family protein LENGTH=395	IPR006917 (SOUL haem-binding protein), IPR018790 (Protein of unknown function DUF2358)	
Niben101Scf06101g02027.1	ref|XP_002516936.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF45550.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01834g01020.1	dbj|BAO49707.1|	***-	nuclear pore complex protein Nup136c [Nicotiana benthamiana]		
Niben101Scf07987g01008.1	sp|Q9ZCG1|NUOL_RICPR	*-*-	NADH-quinone oxidoreductase subunit L	IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	
Niben101Scf01983g04014.1	sp|O94880|PHF14_HUMAN	*-*-	PHD finger protein 14	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01765g03015.1	AT1G29500.1	***-	SAUR-like auxin-responsive protein family LENGTH=135	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf06387g01014.1			Unknown protein		
Niben101Scf11961g00004.1	sp|P29375|KDM5A_HUMAN	*-*-	Lysine-specific demethylase 5A	IPR003347 (JmjC domain), IPR003349 (JmjN domain), IPR004198 (Zinc finger, C5HC2-type)	
Niben101Scf05620g03016.1	AT2G03780.1	***-	Translin family protein LENGTH=287	IPR002848 (Translin)	GO:0043565 (sequence-specific DNA binding)
Niben101Scf06172g02020.1	sp|Q5EA79|GALM_BOVIN	*-*-	Aldose 1-epimerase	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf03072g03007.1	AT4G36710.1	***-	GRAS family transcription factor LENGTH=486	IPR005202 (Transcription factor GRAS)	
Niben101Scf04990g00010.1	sp|Q15560|TCEA2_HUMAN	*-**	Transcription elongation factor A protein 2	IPR003618 (Transcription elongation factor S-II, central domain), IPR016492 (Transcription elongation factor, TFIIS-related), IPR017923 (Transcription factor IIS, N-terminal)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0006357 (regulation of transcription from RNA polymerase II promoter), GO:0008270 (zinc ion binding), GO:0032784 (regulation of DNA-templated transcription, elongation)
Niben101Scf08523g00022.1	AT2G26640.1	***-	3-ketoacyl-CoA synthase 11 LENGTH=509	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02902g04016.1	AT1G43650.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=343	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf09432g00005.1	sp|P92962|PROT2_ARATH	*-*-	Proline transporter 2	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf09097g01007.1	AT1G79000.2	****	histone acetyltransferase of the CBP family 1 LENGTH=1741	IPR000197 (Zinc finger, TAZ-type), IPR000433 (Zinc finger, ZZ-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR013178 (Histone H3-K56 acetyltransferase, RTT109)	GO:0003712 (transcription cofactor activity), GO:0004402 (histone acetyltransferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf03489g00006.1	gb|EFN89813.1|	--*-	Ubiquilin-1 [Harpegnathos saltator]	IPR029071 (Ubiquitin-related domain)	
Niben101Scf08526g01008.1	sp|Q56X76|RH39_ARATH	*-*-	DEAD-box ATP-dependent RNA helicase 39	IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf11689g01016.1	gb|AFN27145.1|	--*-	N-acetylglucosamine-1-phosphate transferase, partial [Leishmania major]		
Niben101Scf06026g02023.1	sp|P93011|PP182_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf14900g00007.1	emb|CDX92646.1|	***-	BnaC07g39040D [Brassica napus]		
Niben101Scf20652g01025.1	AT1G62020.1	***-	Coatomer, alpha subunit LENGTH=1216	IPR011990 (Tetratricopeptide-like helical domain), IPR016391 (Coatomer alpha subunit)	GO:0005198 (structural molecule activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport), GO:0030117 (membrane coat), GO:0030126 (COPI vesicle coat)
Niben101Ctg14862g00002.1	ref|XP_007037655.1|	*-*-	Movement protein binding protein 2C, putative isoform 3 [Theobroma cacao] gb|EOY22156.1| Movement protein binding protein 2C, putative isoform 3 [Theobroma cacao]		
Niben101Scf04114g02042.1	gb|AFI44276.1|	*-*-	NADH dehydrogenase subunit 5 (mitochondrion) [Silene vulgaris]		
Niben101Scf00245g03001.1			Unknown protein		
Niben101Scf02188g02027.1	sp|Q9ASZ8|PPR37_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01520g07016.1	sp|B3H4F1|SP1L1_ARATH	***-	Protein SPIRAL1-like 1		
Niben101Scf02533g02001.1	ref|WP_019476471.1|	***-	glycosyl transferase [Prochlorococcus sp. W4]	IPR001296 (Glycosyl transferase, family 1), IPR028098 (Glycosyltransferase subfamily 4, N-terminal domain)	GO:0009058 (biosynthetic process)
Niben101Scf00885g20003.1	gb|AAD24658.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf01922g10001.1			Unknown protein		
Niben101Scf00830g00001.1	AT1G03520.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=447	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf05078g01017.1	AT5G13150.1	****	exocyst subunit exo70 family protein C1 LENGTH=653	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf05942g00002.1	AT3G47850.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; Has 57 Blast hits to 57 proteins in 32 species: Archae - 0; Bacteria - 5; Metazoa - 12; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). LENGTH=352		
Niben101Scf09186g00004.1	AT1G22630.1	***-	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 86 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). LENGTH=110	IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)	GO:0031072 (heat shock protein binding), GO:0051082 (unfolded protein binding)
Niben101Scf06772g01006.1	AT1G68140.1	*-*-	Protein of unknown function (DUF1644) LENGTH=334	IPR012866 (Protein of unknown function DUF1644), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf13595g01002.1	AT2G46560.1	*-*-	transducin family protein / WD-40 repeat family protein LENGTH=2513	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR022033 (RAVE complex protein Rav1 C-terminal)	GO:0005515 (protein binding)
Niben101Scf01476g00023.1	sp|P46290|RL31_NICGU	***-	60S ribosomal protein L31	IPR000054 (Ribosomal protein L31e), IPR023621 (Ribosomal protein L31e domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00379g02005.1			Unknown protein		
Niben101Scf04763g00007.1	AT5G21222.1	*-**	protein kinase family protein LENGTH=831	IPR011009 (Protein kinase-like domain), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote), IPR028375 (KA1 domain/Ssp2 C-terminal domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02910g01010.1	sp|Q8R033|LYRM2_MOUSE	--*-	LYR motif-containing protein 2	IPR008011 (Complex 1 LYR protein)	
Niben101Scf12339g00008.1	ref|NP_001176137.1|	--*-	[Oryza sativa Japonica Group] dbj|BAH94865.1| [Oryza sativa Japonica Group]		
Niben101Scf08020g05009.1	gb|KEH24214.1|	***-	harpin-induced-like protein [Medicago truncatula]	IPR004864 (Late embryogenesis abundant protein, LEA-14)	
Niben101Scf01054g15003.1	AT4G31860.1	*-*-	Protein phosphatase 2C family protein LENGTH=357	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf00700g02001.1	AT1G30840.1	*-*-	purine permease 4 LENGTH=382	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf00818g02006.1	gb|AEM24937.1|	***-	thionin-like protein [Nicotiana tabacum]		
Niben101Scf00522g01017.1	sp|P81391|MYB05_ANTMA	*-*-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03026g06001.1	AT5G10080.1	***-	Eukaryotic aspartyl protease family protein LENGTH=528	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf03937g02005.1	sp|Q91WW7|PLPL3_MOUSE	--*-	Patatin-like phospholipase domain-containing protein 3	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0008152 (metabolic process)
Niben101Scf06562g02013.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10073g00018.1			Unknown protein		
Niben101Scf03449g02018.1	sp|Q84WW1|FB140_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01192g07005.1	sp|Q5F488|MAGI3_CHICK	--*-	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3		
Niben101Scf21484g01002.1	ref|XP_007015731.1|	--*-	Peptidyl-prolyl cis-trans isomerase G [Theobroma cacao] gb|EOY33350.1| Peptidyl-prolyl cis-trans isomerase G [Theobroma cacao]		
Niben101Scf09427g01011.1	sp|Q9M907|PP217_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf00440g00002.1	AT1G54340.1	****	isocitrate dehydrogenase LENGTH=416	IPR004790 (Isocitrate dehydrogenase NADP-dependent), IPR024084 (Isopropylmalate dehydrogenase-like domain)	GO:0000287 (magnesium ion binding), GO:0004450 (isocitrate dehydrogenase (NADP+) activity), GO:0006102 (isocitrate metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07849g01005.1	sp|Q8L608|HPSE2_ARATH	***-	Heparanase-like protein 2	IPR005199 (Glycoside hydrolase, family 79)	GO:0016020 (membrane), GO:0016798 (hydrolase activity, acting on glycosyl bonds)
Niben101Scf01376g04023.1	sp|P46629|RAB25_RABIT	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02174g03002.1	ref|XP_003611310.1|	--*-	Cys2/His2 zinc-finger transcription factor [Medicago truncatula] gb|AES94268.1| zinc finger ZAT9-like protein [Medicago truncatula]	IPR007087 (Zinc finger, C2H2)	GO:0046872 (metal ion binding)
Niben101Scf01719g04002.1	sp|Q9LRZ5|PLDP1_ARATH	***-	Phospholipase D p1	IPR011993 (Pleckstrin homology-like domain), IPR015679 (Phospholipase D family), IPR025202 (Phospholipase D-like domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf00056g04001.1	gb|KEH34332.1|	*-**	fructose-6-phosphate-2-kinase/fructose-2, 6-bisphosphatase [Medicago truncatula]	IPR003094 (Fructose-2,6-bisphosphatase), IPR013783 (Immunoglobulin-like fold), IPR013784 (Carbohydrate-binding-like fold)	GO:0003824 (catalytic activity), GO:0005524 (ATP binding), GO:0006003 (fructose 2,6-bisphosphate metabolic process), GO:0030246 (carbohydrate binding), GO:2001070 (starch binding)
Niben101Scf06556g05003.1	sp|A4W9T2|MDTK_ENT38	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01555g01006.1	sp|B0G107|SAMH1_DICDI	*-*-	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog		
Niben101Scf10442g00015.1	sp|A0LEQ1|NUOD_SYNFM	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf17294g00003.1	sp|Q1PDH6|LAC16_ARATH	*-*-	Laccase-16	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03066g00007.1	sp|Q1CSM2|GUAA_HELPH	--*-	GMP synthase [glutamine-hydrolyzing]		
Niben101Scf15963g00004.1	AT4G32480.1	***-	Protein of unknown function (DUF506) LENGTH=287	IPR006502 (Protein of unknown function DUF506, plant)	
Niben101Scf08167g00003.1			Unknown protein		
Niben101Scf00321g04014.1	sp|Q7WTR3|MDTK_ERWAM	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf06942g02008.1	sp|Q5QA72|RPOB_ACOGR	*-*-	DNA-directed RNA polymerase subunit beta		
Niben101Scf01926g05001.1	sp|Q8VZU2|SY132_ARATH	***-	Syntaxin-132	IPR010989 (t-SNARE)	GO:0005515 (protein binding), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf04943g01039.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf19479g00002.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00120g00011.1	sp|Q43043|PME_PETIN	****	Pectinesterase	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf07284g02003.1	sp|Q9ZQG9|E1314_ARATH	***-	Glucan endo-1,3-beta-glucosidase 14	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00725g04002.1	AT1G18470.1	***-	Transmembrane Fragile-X-F-associated protein LENGTH=467	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR019396 (Transmembrane Fragile-X-F-associated protein)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00379g02004.1	sp|A1AVT4|CMOB_RUTMC	--*-	tRNA (mo5U34)-methyltransferase		
Niben101Scf23481g00004.1	sp|Q8CGC6|RBM28_MOUSE	*-**	RNA-binding protein 28	IPR006509 (Splicing factor, RBM39-like), IPR029123 (Splicing factor RBM39, linker)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0005634 (nucleus), GO:0006397 (mRNA processing)
Niben101Scf08753g02042.1	sp|Q9FJU9|E1313_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 13	IPR012946 (X8 domain)	
Niben101Scf14769g00003.1	sp|A7I3C8|ARLY_CAMHC	--*-	Argininosuccinate lyase		
Niben101Scf02257g01009.1	gb|AES66960.2|	***-	DUF1685 family protein [Medicago truncatula]	IPR012881 (Protein of unknown function DUF1685)	
Niben101Scf08843g01004.1			Unknown protein		
Niben101Scf04486g00001.1	ref|XP_007040372.1|	***-	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao] gb|EOY24873.1| Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative [Theobroma cacao]	IPR004864 (Late embryogenesis abundant protein, LEA-14), IPR013783 (Immunoglobulin-like fold)	
Niben101Scf11969g00006.1	sp|P0CZ28|ECFA1_STRP3	****	Energy-coupling factor transporter ATP-binding protein EcfA1	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf00774g01029.1	sp|Q04716|RT03_PETHY	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf03830g00009.1	sp|Q9SD82|RFA1B_ARATH	--*-	Replication protein A 70 kDa DNA-binding subunit B	IPR012340 (Nucleic acid-binding, OB-fold)	
Niben101Scf04953g07003.1	gb|AET04282.2|	*-*-	DUF1685 family protein [Medicago truncatula]		
Niben101Scf05475g01003.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf00017g03003.1	AT5G64030.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=829	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf07962g00006.1	sp|Q8RY60|Y1733_ARATH	*-*-	DUF21 domain-containing protein	IPR002550 (Domain of unknown function DUF21)	
Niben101Scf12947g00001.1	sp|Q9UJW2|TINAG_HUMAN	--*-	Tubulointerstitial nephritis antigen		
Niben101Scf00905g13009.1	AT1G03730.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=167		
Niben101Scf12457g00003.1	sp|A2ZFY7|FON2_ORYSI	--*-	Protein FLORAL ORGAN NUMBER2		
Niben101Scf00854g03046.1	sp|P05502|COX1_SORBI	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf15065g00001.1	AT1G11545.1	****	xyloglucan endotransglucosylase/hydrolase 8 LENGTH=305	IPR008264 (Beta-glucanase), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf17294g00002.1	sp|Q0IQU1|LAC22_ORYSJ	*-*-	Laccase-22	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02750g04021.1			Unknown protein		
Niben101Scf02031g03003.1	sp|C4B8C4|EPFL3_ARATH	*-*-	EPIDERMAL PATTERNING FACTOR-like protein 3		
Niben101Scf08222g02003.1	sp|Q9Z8J2|TLC1_CHLPN	****	ADP,ATP carrier protein 1	IPR004667 (ADP/ATP carrier protein)	GO:0005471 (ATP:ADP antiporter activity), GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf01716g00027.1	sp|O43913|ORC5_HUMAN	****	Origin recognition complex subunit 5	IPR020796 (Origin recognition complex, subunit 5), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000808 (origin recognition complex), GO:0005634 (nucleus), GO:0006260 (DNA replication)
Niben101Scf09368g04003.1			Unknown protein		
Niben101Scf06447g00004.1	emb|CDX91314.1|	***-	BnaC02g27250D [Brassica napus]		
Niben101Scf10713g00055.1	AT4G09150.2	*-*-	T-complex protein 11 LENGTH=1098	IPR008862 (T-complex 11)	
Niben101Scf01267g04018.1	gb|ABA98861.1|	***-	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf02522g01002.1	AT1G13340.1	*-*-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=409	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf05387g08003.1	AT1G30460.1	***-	cleavage and polyadenylation specificity factor 30 LENGTH=631	IPR000571 (Zinc finger, CCCH-type), IPR007275 (YTH domain)	GO:0046872 (metal ion binding)
Niben101Scf09792g01011.1	sp|Q9SIM4|RL141_ARATH	***-	60S ribosomal protein L14-1	IPR002784 (Ribosomal protein L14), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01922g10003.1	ref|XP_007034556.1|	***-	UPF0329 protein ECU01_0100/ECU01_1510/ECU08_0030, putative isoform 1 [Theobroma cacao] gb|EOY05482.1| UPF0329 protein ECU01_0100/ECU01_1510/ECU08_0030, putative isoform 1 [Theobroma cacao]	IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf10442g00014.1	sp|Q1QD91|NUOH_PSYCK	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf04841g00032.1	ref|XP_002526600.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35759.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf16208g00007.1	AT2G28990.1	***-	Leucine-rich repeat protein kinase family protein LENGTH=884	IPR001611 (Leucine-rich repeat), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0005515 (protein binding)
Niben101Scf02124g01036.1	AT5G48930.1	*-**	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase LENGTH=433	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf08476g00011.1	sp|Q8LPG9|IQD14_ARATH	***-	Protein IQ-DOMAIN 14	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf09427g01012.1			Unknown protein		
Niben101Scf01942g04001.1	sp|Q9ZUU0|WRK44_ARATH	--**	WRKY transcription factor 44	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00472g05017.1	sp|O54982|KCNU1_MOUSE	--**	Potassium channel subfamily U member 1	IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG)	GO:0005216 (ion channel activity), GO:0005249 (voltage-gated potassium channel activity), GO:0006811 (ion transport), GO:0006813 (potassium ion transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf15972g02025.1	sp|Q9SIK7|PSNB_ARATH	***-	Presenilin-like protein	IPR006639 (Presenilin/signal peptide peptidase)	GO:0004190 (aspartic-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf02175g03015.1	sp|Q9QUR6|PPCE_MOUSE	****	Prolyl endopeptidase	IPR002470 (Peptidase S9A, prolyl oligopeptidase), IPR023302 (Peptidase S9A, N-terminal domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0070008 (serine-type exopeptidase activity)
Niben101Scf00024g00012.1	sp|Q9R210|TFEB_MOUSE	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf02001g02014.1			Unknown protein		
Niben101Scf01188g05004.1	AT3G04240.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=977	IPR011990 (Tetratricopeptide-like helical domain), IPR029489 (O-GlcNAc transferase, C-terminal)	GO:0005515 (protein binding)
Niben101Scf00358g00001.1	sp|Q9N1Q8|CABP5_BOVIN	--**	Calcium-binding protein 5	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Ctg14305g00004.1	ref|XP_002523935.1|	*-**	hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gb|EEF38422.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf06235g03004.1	sp|Q9SKX1|IBH1_ARATH	-**-	Transcription factor IBH1	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03053g00001.1	sp|Q5E639|HIS1_VIBF1	****	ATP phosphoribosyltransferase	IPR001348 (ATP phosphoribosyltransferase HisG)	GO:0000105 (histidine biosynthetic process), GO:0000287 (magnesium ion binding), GO:0003879 (ATP phosphoribosyltransferase activity), GO:0005737 (cytoplasm)
Niben101Scf03012g03022.1	sp|Q29RV1|PDIA4_BOVIN	*-*-	Protein disulfide-isomerase A4	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf05822g00004.1	sp|Q6Z9F4|CIPK6_ORYSJ	****	CBL-interacting protein kinase 6	IPR020636 (Calcium/calmodulin-dependent/calcium-dependent protein kinase)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02497g01011.1	sp|Q8HYR6|DHRS9_BOVIN	--**	Dehydrogenase/reductase SDR family member 9	IPR002198 (Short-chain dehydrogenase/reductase SDR)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01252g01012.1	gb|KEH30865.1|	--*-	MADS-box transcription factor [Medicago truncatula]		
Niben101Scf09127g01004.1	sp|P46976|GLYG_HUMAN	*-*-	Glycogenin-1	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf02636g08003.1	ref|XP_002515459.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF46908.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08198g00001.1	AT3G15940.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=697	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf20364g00001.1	sp|Q9FIC6|GL117_ARATH	***-	Germin-like protein subfamily 1 member 17	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf02812g02018.1	sp|Q8H7N9|ATL31_ORYSJ	*-*-	E3 ubiquitin-protein ligase	IPR004326 (Mlo-related protein), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0006952 (defense response), GO:0008270 (zinc ion binding), GO:0016021 (integral component of membrane)
Niben101Scf08977g01004.1	sp|B4F6X2|LYRM9_XENTR	-**-	LYR motif-containing protein 9	IPR008011 (Complex 1 LYR protein)	
Niben101Scf00311g05015.1	sp|Q9JVA3|SYT_NEIMA	*-**	Threonine--tRNA ligase	IPR002320 (Threonine-tRNA ligase, class IIa)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0004829 (threonine-tRNA ligase activity), GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006418 (tRNA aminoacylation for protein translation), GO:0006435 (threonyl-tRNA aminoacylation)
Niben101Scf01822g04006.1	sp|P29375|KDM5A_HUMAN	*-*-	Lysine-specific demethylase 5A	IPR003347 (JmjC domain), IPR003349 (JmjN domain), IPR004198 (Zinc finger, C5HC2-type)	
Niben101Scf11447g02008.1	AT5G11850.1	*-**	Protein kinase superfamily protein LENGTH=880	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00439g02003.1			Unknown protein		
Niben101Scf00073g01001.1	sp|Q7XT39|EXPB5_ORYSJ	***-	Expansin-B5	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0019953 (sexual reproduction)
Niben101Scf02262g01020.1	sp|Q94B77|FH5_ARATH	*-*-	Formin-like protein 5	IPR015425 (Formin, FH2 domain)	
Niben101Scf05559g01013.1	AT3G63200.1	***-	PATATIN-like protein 9 LENGTH=384	IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase)	GO:0006629 (lipid metabolic process), GO:0008152 (metabolic process)
Niben101Scf01481g00010.1	AT1G23480.1	***-	cellulose synthase-like A3 LENGTH=556	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf01228g01007.1	AT1G15910.1	*-*-	XH/XS domain-containing protein LENGTH=634	IPR005379 (Uncharacterised domain XH)	
Niben101Scf11491g02018.1	sp|O48837|LRKS2_ARATH	*-**	Receptor like protein kinase S.2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04440g00009.1	sp|Q4P8R9|PABP_USTMA	*-**	Polyadenylate-binding protein, cytoplasmic and nuclear	IPR001876 (Zinc finger, RanBP2-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf01911g08010.1	AT5G60740.1	***-	ABC transporter family protein LENGTH=1109	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf02055g00001.1	sp|O16810|ORC1_DROME	*-*-	Origin recognition complex subunit 1	IPR001025 (Bromo adjacent homology (BAH) domain), IPR003959 (ATPase, AAA-type, core), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0008270 (zinc ion binding)
Niben101Scf01460g01009.1	AT1G17980.1	****	poly(A) polymerase 1 LENGTH=713	IPR007012 (Poly(A) polymerase, central domain), IPR011068 (Nucleotidyltransferase, class I, C-terminal-like)	GO:0003723 (RNA binding), GO:0004652 (polynucleotide adenylyltransferase activity), GO:0005634 (nucleus), GO:0016779 (nucleotidyltransferase activity), GO:0031123 (RNA 3'-end processing), GO:0043631 (RNA polyadenylation)
Niben101Scf12017g05016.1	AT4G16340.1	****	guanyl-nucleotide exchange factors;GTPase binding;GTP binding LENGTH=1830	IPR010703 (Dedicator of cytokinesis C-terminal), IPR026791 (Dedicator of cytokinesis), IPR027357 (DHR-2 domain)	GO:0005085 (guanyl-nucleotide exchange factor activity), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf02155g03008.1	sp|Q7NEG2|RL14_GLOVI	*-*-	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf31149g00001.1	ref|YP_009091714.1|	***-	orf105 (mitochondrion) [Panax ginseng] gb|AHJ81036.1| orf105 (mitochondrion) [Panax ginseng]		
Niben101Scf06749g01004.1	sp|Q84K00|NAC78_ARATH	*-*-	NAC domain-containing protein 78	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01739g08011.1	sp|P42696|RBM34_HUMAN	--**	RNA-binding protein 34	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf02709g03024.1	sp|C5XYW4|RU1C2_SORBI	*-*-	U1 small nuclear ribonucleoprotein C-2	IPR017340 (U1 small nuclear ribonucleoprotein C)	GO:0000387 (spliceosomal snRNP assembly), GO:0000398 (mRNA splicing, via spliceosome), GO:0003676 (nucleic acid binding), GO:0005634 (nucleus), GO:0005685 (U1 snRNP), GO:0008270 (zinc ion binding)
Niben101Scf01841g00006.1	gb|KEH44490.1|	***-	DUF674 family protein [Medicago truncatula]	IPR007750 (Protein of unknown function DUF674)	
Niben101Scf03460g07003.1	gb|AEB06129.1|	*-*-	Rpp4 candidate R7 [Glycine max]		
Niben101Scf06186g03002.1	AT5G23940.1	****	HXXXD-type acyl-transferase family protein LENGTH=484	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02518g01010.1	sp|Q5SWK7|RN145_MOUSE	*-*-	RING finger protein 145	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01998g06004.1	sp|P54772|DCHS_SOLLC	*-*-	Histidine decarboxylase	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Ctg15077g00003.1	sp|Q8L4J2|CTF50_ARATH	*-*-	Cleavage stimulation factor subunit 50	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05952g02012.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf15720g00002.1	gb|AAT00536.1|	*-*-	effector of transcription [Brassica napus]		
Niben101Scf00875g04004.1	sp|Q5ZLN0|LRC40_CHICK	*-*-	Leucine-rich repeat-containing protein 40	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf01190g00013.1	sp|Q9SD40|SRS1_ARATH	***-	Protein SHI RELATED SEQUENCE 1	IPR007818 (Protein of unknown function DUF702)	
Niben101Ctg09170g00001.1	sp|Q03199|IPIB_TOBAC	-***	Proteinase inhibitor I-B	IPR000864 (Proteinase inhibitor I13, potato inhibitor I)	GO:0004867 (serine-type endopeptidase inhibitor activity), GO:0009611 (response to wounding)
Niben101Scf03801g02007.1	AT4G38040.1	***-	Exostosin family protein LENGTH=425	IPR004263 (Exostosin-like)	
Niben101Scf02513g06005.1	ref|XP_003599472.1|	--*-	Defensin-like protein [Medicago truncatula]		
Niben101Scf00069g15018.1	AT2G03070.1	*-*-	mediator subunit 8 LENGTH=524		
Niben101Scf03883g02002.1	emb|CDY51258.1|	***-	BnaCnng20370D [Brassica napus]		
Niben101Scf10669g00011.1	ref|WP_020770041.1|	***-	sodium Bile acid symporter family protein [Lept [Leptospira sp. B5-022]	IPR002657 (Bile acid:sodium symporter/arsenical resistance protein  Acr3)	GO:0016020 (membrane)
Niben101Scf00355g00002.1			Unknown protein		
Niben101Scf12781g00002.1	sp|Q06RD0|YCF4_JASNU	*-*-	Photosystem I assembly protein Ycf4		
Niben101Scf12847g00009.1	AT3G23090.1	***-	TPX2 (targeting protein for Xklp2) protein family LENGTH=338	IPR027329 (TPX2, C-terminal domain)	
Niben101Scf11922g00016.1	AT2G44350.2	****	Citrate synthase family protein LENGTH=474	IPR002020 (Citrate synthase-like)	GO:0004108 (citrate (Si)-synthase activity), GO:0006099 (tricarboxylic acid cycle), GO:0044262 (cellular carbohydrate metabolic process), GO:0046912 (transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer)
Niben101Scf10050g00002.1	sp|A7FCW1|PFKA_YERP3	*-**	ATP-dependent 6-phosphofructokinase	IPR000023 (Phosphofructokinase domain)	GO:0003872 (6-phosphofructokinase activity), GO:0006096 (glycolytic process)
Niben101Scf01905g01024.1	sp|P0DI19|PHF5A_ARATH	***-	PHD finger-like domain-containing protein 5A	IPR005345 (PHF5-like)	
Niben101Scf00276g01006.1	AT5G64816.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=130		
Niben101Scf03202g03004.1	sp|Q9LMP1|WAK2_ARATH	****	Wall-associated receptor kinase 2	IPR000742 (Epidermal growth factor-like domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf03150g03001.1	sp|Q7XYY2|MED25_ARATH	***-	Mediator of RNA polymerase II transcription subunit 25	IPR021419 (Mediator complex, subunit Med25, von Willebrand factor type A)	
Niben101Scf05543g01026.1	sp|P94304|FTSH_BACPE	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01259g04007.1	AT2G34585.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=81		
Niben101Scf02551g01004.1			Unknown protein		
Niben101Scf03202g11003.1	ref|XP_002528326.1|	****	DNA binding protein, putative [Ricinus communis] gb|EEF34084.1| DNA binding protein, putative [Ricinus communis]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04290g03010.1	sp|Q8GXS8|PKS3_ARATH	***-	Protein PHYTOCHROME KINASE SUBSTRATE 3		
Niben101Scf00561g00001.1	AT1G09910.1	***-	Rhamnogalacturonate lyase family protein LENGTH=675	IPR008979 (Galactose-binding domain-like), IPR010325 (Rhamnogalacturonate lyase), IPR011013 (Galactose mutarotase-like domain), IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf01072g03006.1	sp|Q8GXV5|UGHY_ARATH	***-	(S)-ureidoglycine aminohydrolase	IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf06570g01007.1	AT1G07640.3	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=339	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00551g06022.1	sp|Q6ZUT9|DEN5B_HUMAN	--*-	DENN domain-containing protein 5B	IPR001194 (DENN domain)	
Niben101Ctg12845g00002.1	AT1G73190.1	*-*-	Aquaporin-like superfamily protein LENGTH=268	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00854g08067.1	ref|XP_002520077.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF42401.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04562g01009.1	AT1G80450.1	***-	VQ motif-containing protein LENGTH=177	IPR008889 (VQ)	
Niben101Scf08041g01009.1	sp|Q9SNB4|PCL1_ARATH	***-	Transcription factor LUX	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00302g03028.1	sp|Q8UI71|ARGD_AGRT5	***-	Acetylornithine aminotransferase	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0003824 (catalytic activity), GO:0005515 (protein binding), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01691g00007.1	AT5G45690.1	***-	Protein of unknown function (DUF1264) LENGTH=247	IPR010686 (Protein of unknown function DUF1264)	
Niben101Scf14009g02005.1	sp|Q9SHK2|PPR17_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf08991g02024.1	AT1G62050.1	*-*-	Ankyrin repeat family protein LENGTH=624	IPR021832 (Ankyrin repeat domain-containing protein 13)	
Niben101Scf24018g00005.1	AT2G25780.1	***-	Protein of unknown function (DUF1677) LENGTH=153	IPR012876 (Protein of unknown function DUF1677, plant)	
Niben101Scf00449g06010.1	gb|ACG43350.1|	***-	SLT1 protein [Zea mays]		
Niben101Scf06999g00008.1	AT2G39210.1	*-*-	Major facilitator superfamily protein LENGTH=601	IPR010658 (Nodulin-like), IPR020846 (Major facilitator superfamily domain)	
Niben101Scf00416g07001.1	sp|Q941Q3|C3H37_ARATH	***-	Zinc finger CCCH domain-containing protein 37	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf02335g02003.1	emb|CDY43795.1|	***-	BnaA06g23310D [Brassica napus]		
Niben101Scf00606g02019.1	emb|CDX69229.1|	***-	BnaC01g02240D [Brassica napus]		
Niben101Scf02982g01014.1	sp|P12451|POL_HV2SB	--*-	Gag-Pol polyprotein	IPR018289 (MULE transposase domain)	
Niben101Scf22728g00001.1	sp|Q9ZU11|ATB15_ARATH	*-*-	Homeobox-leucine zipper protein ATHB-15		
Niben101Scf15721g00003.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00202g01002.1	ref|NP_565550.1|	****	protein RER1C1 [Arabidopsis thaliana] RecName: Full=Protein RER1C; Short=AtRER1C [Arabidopsis thaliana] dbj|BAA33862.1| AtRER1C [Arabidopsis thaliana] gb|AAL47450.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAB87102.2| putative integral membrane protein [Arabidopsis thaliana] gb|AAM19906.1| At2g23310/T20D16.6 [Arabidopsis thaliana] gb|AAM63458.1| putative integral membrane protein [Arabidopsis thaliana] gb|AEC07439.1| protein RER1C1 [Arabidopsis thaliana]	IPR004932 (Retrieval of early ER protein Rer1)	GO:0016021 (integral component of membrane)
Niben101Scf13411g03006.1			Unknown protein		
Niben101Scf01761g00016.1	sp|P61740|GPDA_GEOSL	****	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	IPR006168 (Glycerol-3-phosphate dehydrogenase, NAD-dependent), IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR016040 (NAD(P)-binding domain)	GO:0004367 (glycerol-3-phosphate dehydrogenase [NAD+] activity), GO:0005737 (cytoplasm), GO:0005975 (carbohydrate metabolic process), GO:0006072 (glycerol-3-phosphate metabolic process), GO:0009331 (glycerol-3-phosphate dehydrogenase complex), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0042803 (protein homodimerization activity), GO:0046168 (glycerol-3-phosphate catabolic process), GO:0050662 (coenzyme binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02085g14004.1	AT3G51850.1	****	calcium-dependent protein kinase 13 LENGTH=528	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00163g17006.1	sp|O65806|MGN_EUPLA	***-	Protein mago nashi homolog	IPR004023 (Mago nashi protein)	GO:0005634 (nucleus)
Niben101Scf12089g00026.1	emb|CDY41257.1|	***-	BnaA01g12820D [Brassica napus]		
Niben101Scf08238g00003.1	emb|CDX71650.1|	*-*-	BnaC09g26910D [Brassica napus]		
Niben101Scf00962g03006.1	sp|Q6NQB7|B3GT7_ARATH	****	Beta-1,3-galactosyltransferase 7	IPR002659 (Glycosyl transferase, family 31)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf00435g03013.1	AT4G26940.1	****	Galactosyltransferase family protein LENGTH=407	IPR002659 (Glycosyl transferase, family 31), IPR025298 (Domain of unknown function DUF4094)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane)
Niben101Scf03357g00015.1	sp|P93732|PIP_ARATH	*-*-	Proline iminopeptidase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf01538g00029.1	sp|Q9SE45|ANXD3_ARATH	***-	Annexin D3	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf00225g07014.1	sp|A2AWA9|RBGP1_MOUSE	--**	Rab GTPase-activating protein 1	IPR000195 (Rab-GTPase-TBC domain)	GO:0005097 (Rab GTPase activator activity), GO:0032313 (regulation of Rab GTPase activity)
Niben101Scf03455g06003.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01785g09002.1	AT4G18197.1	***-	purine permease 7 LENGTH=390	IPR004853 (Triose-phosphate transporter domain), IPR030182 (Purine permease, plant)	GO:0005215 (transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf05030g02010.1	AT5G62360.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=203	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf03613g00012.1	sp|Q9D994|WDR38_MOUSE	*-*-	WD repeat-containing protein 38	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01249g06014.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf17663g00002.1			Unknown protein		
Niben101Scf02074g01002.1	sp|Q6N5N4|NUOK1_RHOPA	****	NADH-quinone oxidoreductase subunit K 1	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf04765g00005.1	AT1G80270.1	***-	PENTATRICOPEPTIDE REPEAT 596 LENGTH=596	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01623g04005.1	AT5G27000.1	****	kinesin 4 LENGTH=987	IPR001715 (Calponin homology domain), IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf05342g03003.1	sp|O07948|NUOF_RHOCA	*-*-	NADH-quinone oxidoreductase subunit F	IPR011538 (NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain)	
Niben101Scf06101g00009.1	sp|Q5RBB1|SENP1_PONAB	*-*-	Sentrin-specific protease 1	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01866g01018.1	sp|Q3E9F0|PP392_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf09015g02009.1	sp|Q01846|MDM1_YEAST	--*-	Structural protein MDM1		
Niben101Scf10796g00014.1	AT5G24270.1	****	Calcium-binding EF-hand family protein LENGTH=222	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf07498g03008.1			Unknown protein		
Niben101Scf08091g00005.1	AT4G38840.1	***-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf06117g01012.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf38437g00004.1	sp|O81283|TC159_ARATH	*-*-	Translocase of chloroplast 159, chloroplastic	IPR024283 (Domain of unknown function DUF3406, chloroplast translocase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf02887g01013.1			Unknown protein		
Niben101Scf05605g00033.1	sp|P05499|ATP6_TOBAC	*-*-	ATP synthase subunit a		
Niben101Scf01150g01012.1	sp|Q9M2C0|VITH4_ARATH	***-	Vacuolar iron transporter homolog 4	IPR008217 (Ccc1 family)	
Niben101Scf01970g07019.1	sp|Q9C6V4|AGL92_ARATH	--*-	Agamous-like MADS-box protein AGL92	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf07489g01003.1	sp|O94804|STK10_HUMAN	*-**	Serine/threonine-protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09785g00012.1	gb|AES80939.2|	--*-	transcription factor, putative [Medicago truncatula]		
Niben101Scf01433g07008.1	AT3G51100.1	***-	unknown protein; Has 48 Blast hits to 48 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=211		
Niben101Scf05444g00004.1	sp|Q9SV30|GATA8_ARATH	*-**	GATA transcription factor 8	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf15538g00002.1	ref|XP_002524361.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37972.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00597g05013.1			Unknown protein		
Niben101Scf03000g00019.1			Unknown protein		
Niben101Scf07638g01003.1	sp|Q8VIK1|SNR25_MOUSE	-**-	U11/U12 small nuclear ribonucleoprotein 25 kDa protein	IPR029071 (Ubiquitin-related domain)	
Niben101Scf06396g00010.1	sp|Q9ZVD5|AGO4_ARATH	***-	Protein argonaute 4	IPR003100 (PAZ domain), IPR014811 (Domain of unknown function DUF1785)	GO:0005515 (protein binding)
Niben101Scf20506g01027.1	sp|Q9FFI5|NAC86_ARATH	*-*-	NAC domain-containing protein 86	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01202g01013.1	sp|P23922.1|HBP1A_WHEAT	****	RecName: Full=Transcription factor HBP-1a; AltName: Full=Histone-specific transcription factor HBP1 [Triticum aestivum] pir||A41349 histone-specific transcription factor HBP1 - wheat emb|CAA40101.1| HBP-1a [Triticum aestivum] gb|AAA34293.1| DNA-binding protein [Triticum aestivum] dbj|BAA07289.1| transcription factor HBP-1a(17) [Triticum aestivum]	IPR004827 (Basic-leucine zipper domain), IPR012900 (G-box binding, MFMR)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf13622g01021.1	AT1G62330.1	***-	O-fucosyltransferase family protein LENGTH=652	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf00596g02001.1	ref|WP_022735199.1|	***-	crossover junction endodeoxyribonuclease [Candidatus Pelagibacter ubique]		
Niben101Scf00927g10001.1	sp|Q32P28|P3H1_HUMAN	*-*-	Prolyl 3-hydroxylase 1		
Niben101Scf00063g08003.1	gb|KEH33297.1|	***-	YGL010w-like protein [Medicago truncatula]	IPR009305 (Protein of unknown function DUF962)	
Niben101Scf07226g05001.1	sp|Q8LP17|CCD1_PEA	*-*-	Carotenoid 9,10(9',10')-cleavage dioxygenase 1	IPR004294 (Carotenoid oxygenase)	
Niben101Scf09016g00004.1	sp|Q4K3E4|HIS32_PSEF5	*-**	Phosphoribosyl-AMP cyclohydrolase 2	IPR002496 (Phosphoribosyl-AMP cyclohydrolase domain), IPR021130 (Phosphoribosyl-ATP pyrophosphohydrolase-like)	GO:0000105 (histidine biosynthetic process), GO:0004635 (phosphoribosyl-AMP cyclohydrolase activity), GO:0004636 (phosphoribosyl-ATP diphosphatase activity)
Niben101Scf12954g02010.1	sp|Q948T9|RBOHB_SOLTU	*-**	Respiratory burst oxidase homolog protein B	IPR011992 (EF-hand domain pair), IPR029654 (Respiratory burst oxidase homologue protein B)	GO:0004601 (peroxidase activity), GO:0005509 (calcium ion binding), GO:0016174 (NAD(P)H oxidase activity), GO:0050664 (oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf02581g05014.1	sp|P0DH90|FRIGI_ARATH	*-*-	Protein FRIGIDA	IPR012474 (Frigida-like)	
Niben101Scf00858g07007.1	gb|AFI44261.1|	***-	cytochrome c biogenesis FC (mitochondrion) [Silene vulgaris]		
Niben101Scf02621g00019.1	sp|Q9LJN2|MRS23_ARATH	****	Magnesium transporter MRS2-3	IPR002523 (Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB), IPR026573 (Magnesium transporter MRS2/LPE10)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf01012g02007.1	sp|Q9FJB5|RP8L3_ARATH	--*-	Disease resistance RPP8-like protein 3		
Niben101Scf01052g07004.1	AT2G24420.1	*-*-	DNA repair ATPase-related LENGTH=440		
Niben101Scf04700g05009.1	AT4G22120.1	*-*-	ERD (early-responsive to dehydration stress) family protein LENGTH=771	IPR003864 (Domain of unknown function DUF221)	GO:0016020 (membrane)
Niben101Scf01964g01005.1	sp|Q949Z1|PGLR4_ARATH	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03865g00008.1	sp|P35476|PLAS1_TOBAC	***-	Plastocyanin A'/A''	IPR001235 (Blue (type 1) copper protein, plastocyanin-type), IPR028871 (Blue (type 1) copper protein, binding site)	GO:0005507 (copper ion binding), GO:0009055 (electron carrier activity)
Niben101Scf11684g00006.1	sp|Q7ZV00|OTU6B_DANRE	***-	OTU domain-containing protein 6B	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf01046g02008.1	sp|Q66IF1|REEP6_DANRE	*-*-	Receptor expression-enhancing protein 6	IPR004345 (TB2/DP1/HVA22-related protein)	
Niben101Scf08711g01001.1	AT3G60450.1	***-	Phosphoglycerate mutase family protein LENGTH=274	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf03254g12004.1	sp|Q4VBE8|WDR18_MOUSE	*-*-	WD repeat-containing protein 18	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf03072g03006.1	sp|P42774|GBF1_ARATH	****	G-box-binding factor 1	IPR012900 (G-box binding, MFMR)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf11410g00002.1	ref|XP_002522544.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF39844.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01694g01002.1	AT1G07220.1	***-	Arabidopsis thaliana protein of unknown function (DUF821) LENGTH=507	IPR006598 (Lipopolysaccharide-modifying protein)	
Niben101Scf02195g07005.1	sp|Q92545|TM131_HUMAN	*-*-	Transmembrane protein 131	IPR022113 (Protein of unknown function DUF3651, TMEM131)	
Niben101Scf01523g00022.1	sp|Q2TBW5|ZNHI2_BOVIN	***-	Zinc finger HIT domain-containing protein 2	IPR007529 (Zinc finger, HIT-type)	
Niben101Scf02929g06023.1	sp|P47141|RT26_YEAST	--*-	37S ribosomal protein S26, mitochondrial		
Niben101Scf01474g01003.1	sp|Q60415|PEX19_CRIGR	***-	Peroxisomal biogenesis factor 19	IPR006708 (Pex19 protein)	GO:0005777 (peroxisome)
Niben101Scf04132g01001.1	AT1G53400.1	***-	Ubiquitin domain-containing protein LENGTH=114		
Niben101Scf02688g00009.1	sp|O23116|EIL3_ARATH	*-*-	ETHYLENE INSENSITIVE 3-like 3 protein	IPR023278 (Ethylene insensitive 3-like protein, DNA-binding domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus)
Niben101Scf18745g00018.1	AT1G23000.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=358	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf01369g00016.1	AT1G20870.1	*-*-	HSP20-like chaperones superfamily protein LENGTH=463	IPR008978 (HSP20-like chaperone)	
Niben101Scf10316g00008.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Ctg13796g00001.1	sp|Q9ZP55|DRP4C_ARATH	*-*-	Dynamin-related protein 4C	IPR000375 (Dynamin central domain), IPR003130 (Dynamin GTPase effector), IPR022812 (Dynamin superfamily)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf19439g00004.1	sp|Q5ZL42|BZW2_CHICK	***-	Basic leucine zipper and W2 domain-containing protein 2	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf08472g00015.1	AT4G22120.1	***-	ERD (early-responsive to dehydration stress) family protein LENGTH=771	IPR003864 (Domain of unknown function DUF221)	GO:0016020 (membrane)
Niben101Scf02252g01034.1	sp|Q9SJF3|DCP1_ARATH	*-*-	mRNA-decapping enzyme-like protein	IPR010334 (Dcp1-like decapping), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf00340g06005.1	AT5G06750.1	****	Protein phosphatase 2C family protein LENGTH=393	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf03421g05002.1	dbj|BAD53335.1|	--*-	HGWP repeat containing protein-like [Oryza sativa Japonica Group]		
Niben101Scf07895g01005.1	sp|B4NP05|INT3_DROWI	*-*-	Integrator complex subunit 3 homolog	IPR019333 (Integrator complex subunit 3)	
Niben101Scf06823g02013.1	gb|KEH39881.1|	*-*-	F-box/RNI/FBD-like domain protein [Medicago truncatula]		
Niben101Scf02540g00013.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02262g00002.1	AT5G54510.1	***-	Auxin-responsive GH3 family protein LENGTH=612	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf05434g02026.1			Unknown protein	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf01983g01019.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01035g05010.1	sp|P93011|PP182_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf04473g05011.1	sp|A2YQ56|LONM_ORYSI	*-*-	Lon protease homolog, mitochondrial		
Niben101Scf01761g08002.1	sp|Q67ZU1|LIP2_ARATH	***-	Triacylglycerol lipase 2	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf07638g01004.1			Unknown protein		
Niben101Scf02606g00007.1	sp|Q54XP6|IF2P_DICDI	*-*-	Eukaryotic translation initiation factor 5B	IPR023115 (Translation initiation factor IF- 2, domain 3)	
Niben101Scf00568g00007.1			Unknown protein		
Niben101Scf03574g00019.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01115g01005.1			Unknown protein		
Niben101Scf01494g03010.1	sp|P42751|CCD11_ARATH	***-	Cyclin-D1-1	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf02597g00003.1	sp|A3CT12|RS8_METMJ	***-	30S ribosomal protein S8	IPR000630 (Ribosomal protein S8)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06004g00016.1	ref|NP_001289446.1|	*-*-	pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like [Nicotiana toment [Nicotiana tomentosiformis]		
Niben101Scf01326g08023.1	sp|Q9GKX6|GALM_PIG	*-*-	Aldose 1-epimerase	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf07400g01008.1	sp|Q8L5Y6|CAND1_ARATH	***-	Cullin-associated NEDD8-dissociated protein 1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf01633g00027.1	sp|Q9ZUN5|TET2_ARATH	***-	Tetraspanin-2	IPR018499 (Tetraspanin/Peripherin)	GO:0016021 (integral component of membrane)
Niben101Scf05078g01016.1	sp|Q3T0T0|GDE1_BOVIN	--*-	Glycerophosphodiester phosphodiesterase 1	IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain)	GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Scf18637g02016.1			Unknown protein		
Niben101Scf15752g00004.1	sp|Q8F812|PYRB_LEPIN	****	Aspartate carbamoyltransferase	IPR006130 (Aspartate/ornithine carbamoyltransferase)	GO:0004070 (aspartate carbamoyltransferase activity), GO:0006207 ('de novo' pyrimidine nucleobase biosynthetic process), GO:0006520 (cellular amino acid metabolic process), GO:0016597 (amino acid binding), GO:0016743 (carboxyl- or carbamoyltransferase activity)
Niben101Scf09867g02025.1	sp|O48520|DPOD2_ARATH	*-*-	DNA polymerase delta small subunit	IPR024826 (DNA polymerase delta/II small subunit family)	
Niben101Scf03791g00015.1	ref|XP_003599472.1|	-**-	Defensin-like protein [Medicago truncatula]		
Niben101Scf01689g03011.1	AT4G15755.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=289	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf00873g02007.1	gb|KEH30692.1|	****	O-acyltransferase WSD1-like protein [Medicago truncatula]	IPR004255 (O-acyltransferase, WSD1, N-terminal), IPR009721 (O-acyltransferase, WSD1, C-terminal)	GO:0004144 (diacylglycerol O-acyltransferase activity), GO:0045017 (glycerolipid biosynthetic process)
Niben101Scf01241g02002.1	AT2G37870.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=115	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00152g19010.1	sp|Q9FXI5|IQD32_ARATH	***-	Protein IQ-DOMAIN 32	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf00712g09038.1	AT1G42960.1	***-	expressed protein localized to the inner membrane of the chloroplast. LENGTH=168		
Niben101Scf03307g06002.1	sp|O82201|AP4S_ARATH	***-	AP-4 complex subunit sigma	IPR016635 (Adaptor protein complex, sigma subunit)	GO:0006810 (transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport)
Niben101Scf01008g02003.1	sp|Q688X9|DI191_ORYSJ	*-*-	Protein DEHYDRATION-INDUCED 19	IPR027935 (Protein dehydration-induced 19, C-terminal)	
Niben101Scf00823g01012.1	sp|C6T1G0|CASP7_SOYBN	***-	CASP-like protein 7	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf03894g02022.1	sp|Q0VC00|ABHD3_BOVIN	*-*-	Abhydrolase domain-containing protein 3	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf04243g00001.1	sp|Q9TM46|PSBC_CYACA	*-*-	Photosystem II CP43 reaction center protein	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01538g00028.1	sp|O83615|RS2_TREPA	*-*-	30S ribosomal protein S2	IPR001865 (Ribosomal protein S2), IPR002618 (UTP--glucose-1-phosphate uridylyltransferase family), IPR023591 (Ribosomal protein S2, flavodoxin-like domain), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0003735 (structural constituent of ribosome), GO:0003983 (UTP:glucose-1-phosphate uridylyltransferase activity), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006011 (UDP-glucose metabolic process), GO:0006412 (translation), GO:0008152 (metabolic process), GO:0070569 (uridylyltransferase activity)
Niben101Scf03412g01020.1	sp|Q8LBW3|LBD12_ARATH	***-	LOB domain-containing protein 12	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf00291g02051.1	sp|A3MIA4|NUOD_BURM7	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03913g01030.1	AT2G38800.1	*-*-	Plant calmodulin-binding protein-related LENGTH=612		
Niben101Scf08652g01011.1	ref|XP_007039411.1|	***-	Zinc finger matrin-type protein 1, putative isoform 1 [Theobroma cacao] gb|EOY23912.1| Zinc finger matrin-type protein 1, putative isoform 1 [Theobroma cacao]		
Niben101Scf03507g02018.1	sp|Q9SAB1|HSP7Q_ARATH	***-	Heat shock 70 kDa protein 16	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf08872g00009.1			Unknown protein		
Niben101Scf14662g00001.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf01750g15003.1	AT5G22250.1	***-	Polynucleotidyl transferase, ribonuclease H-like superfamily protein LENGTH=278	IPR006941 (Ribonuclease CAF1), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Scf00046g06006.1	sp|Q9SH60|PP103_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Ctg06459g00001.1	sp|Q39786|PGLR_GOSHI	*-**	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf39202g00001.1			Unknown protein		
Niben101Scf06628g00001.1			Unknown protein		
Niben101Scf13821g00014.1	gb|AES59797.2|	***-	LA-related protein 6 LA RNA-binding domain protein [Medicago truncatula]	IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf02553g02005.1	sp|P0C8Q7|PP369_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR006968 (Root UVB sensitive family)	
Niben101Scf05627g00008.1	sp|Q8RYC6|IAA32_ARATH	***-	Auxin-responsive protein IAA32	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf02972g06010.1	sp|P16520|GBB3_HUMAN	*-**	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf00495g01028.1	sp|P09394|GLPQ_ECOLI	****	Glycerophosphoryl diester phosphodiesterase	IPR004129 (Glycerophosphoryl diester phosphodiesterase)	GO:0006071 (glycerol metabolic process), GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity), GO:0008889 (glycerophosphodiester phosphodiesterase activity)
Niben101Scf02862g01004.1	sp|Q4P6I3|CWC25_USTMA	--*-	Pre-mRNA-splicing factor CWC25	IPR019339 (CBF1-interacting co-repressor CIR, N-terminal domain), IPR022209 (Pre-mRNA splicing factor)	
Niben101Scf01494g04009.1	sp|Q5ZJR3|OSTC_CHICK	***-	Oligosaccharyltransferase complex subunit OSTC	IPR021149 (Oligosaccharyl transferase complex, subunit OST3/OST6)	
Niben101Scf02445g03008.1	sp|Q9VQB7|EOGT_DROME	--**	EGF domain-specific O-linked N-acetylglucosamine transferase	IPR007657 (Glycosyltransferase AER61, uncharacterised)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf02156g14003.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06566g00008.1	sp|Q5CZL1|GDAP2_XENTR	*-*-	Ganglioside-induced differentiation-associated protein 2	IPR001251 (CRAL-TRIO domain)	
Niben101Scf00595g00013.1	sp|Q8DJ44|TATA_THEEB	*-**	Sec-independent protein translocase protein TatA	IPR003369 (Sec-independent protein translocase protein TatA/B/E)	GO:0005886 (plasma membrane), GO:0008565 (protein transporter activity), GO:0009306 (protein secretion), GO:0015031 (protein transport), GO:0016021 (integral component of membrane)
Niben101Scf02237g09003.1	sp|Q7TQK4|EXOS3_MOUSE	****	Exosome complex component RRP40	IPR004088 (K Homology domain, type 1), IPR012340 (Nucleic acid-binding, OB-fold), IPR026699 (Exosome complex RNA-binding protein 1/RRP40/RRP4)	GO:0000178 (exosome (RNase complex)), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf01394g03001.1	sp|Q8RX01|Y3567_ARATH	*-*-	BTB/POZ domain-containing protein		
Niben101Scf02145g05021.1	gb|KEH36925.1|	*-*-	LysM receptor kinase K1B [Medicago truncatula]		
Niben101Scf01740g10002.1	AT3G05170.1	***-	Phosphoglycerate mutase family protein LENGTH=316	IPR001345 (Phosphoglycerate/bisphosphoglycerate mutase, active site), IPR029033 (Histidine phosphatase superfamily)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf06249g00009.1	AT3G47550.3	****	RING/FYVE/PHD zinc finger superfamily protein LENGTH=288	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR022143 (Protein of unknown function DUF3675)	GO:0008270 (zinc ion binding)
Niben101Scf01534g00002.1	sp|O43396|TXNL1_HUMAN	***-	Thioredoxin-like protein 1	IPR005746 (Thioredoxin), IPR008979 (Galactose-binding domain-like)	GO:0006662 (glycerol ether metabolic process), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf00152g03006.1	AT2G32450.1	****	Calcium-binding tetratricopeptide family protein LENGTH=802	IPR011990 (Tetratricopeptide-like helical domain), IPR011992 (EF-hand domain pair)	GO:0005515 (protein binding)
Niben101Scf03619g05003.1	sp|Q9LFA5|MED28_ARATH	***-	Mediator of RNA polymerase II transcription subunit 28		
Niben101Scf07880g02008.1	tpg|DAA40964.1|	*-*-	TPA: hypothetical protein ZEAMMB73_296136 [Zea mays]		
Niben101Scf10287g00002.1	sp|Q6GGC1|DNAJ_STAAR	--*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf00197g00004.1	AT5G66330.1	*-*-	Leucine-rich repeat (LRR) family protein LENGTH=418		
Niben101Scf02074g07068.1	ref|XP_002516367.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF45984.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05581g00005.1	sp|Q8VYE2|TIM50_ARATH	****	Mitochondrial import inner membrane translocase subunit TIM50	IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain), IPR027111 (Mitochondrial import inner membrane translocase subunit Tim50)	GO:0005515 (protein binding), GO:0005743 (mitochondrial inner membrane), GO:0005744 (mitochondrial inner membrane presequence translocase complex), GO:0015031 (protein transport)
Niben101Scf00920g09022.1	sp|Q9LIG2|RLK6_ARATH	--*-	Receptor-like protein kinase		
Niben101Scf00428g08018.1	gb|EMS63193.1|	*-*-	L-Ala-D/L-Glu epimerase [Triticum urartu]	IPR001354 (Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase), IPR029065 (Enolase C-terminal domain-like)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf02846g01001.1	AT1G17580.1	****	myosin 1 LENGTH=1520	IPR000048 (IQ motif, EF-hand binding site), IPR002710 (Dilute), IPR004009 (Myosin, N-terminal, SH3-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003774 (motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0016459 (myosin complex)
Niben101Scf02249g00012.1	gb|AES64035.2|	--**	GRF zinc finger protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00961g04012.1	AT2G25737.1	*-*-	Sulfite exporter TauE/SafE family protein LENGTH=476	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf00176g01014.1	sp|Q6VNB8|WDFY3_MOUSE	*-*-	WD repeat and FYVE domain-containing protein 3	IPR011990 (Tetratricopeptide-like helical domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0046872 (metal ion binding)
Niben101Scf04113g05007.1	sp|O23708|PSA2A_ARATH	****	Proteasome subunit alpha type-2-A	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf03479g05033.1	gb|AAK51235.1|AF287471_1	*-*-	polyprotein [Arabidopsis thaliana]	IPR029472 (Gag-polypeptide of LTR copia-type)	
Niben101Scf00033g04001.1			Unknown protein		
Niben101Scf01642g01014.1	sp|F4JI46|RGAP2_ARATH	***-	Rho GTPase-activating protein 2	IPR000095 (CRIB domain), IPR008936 (Rho GTPase activation protein)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf04909g00016.1	sp|Q5PPI1|SRSF9_RAT	*-*-	Serine/arginine-rich splicing factor 9	IPR001878 (Zinc finger, CCHC-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf04052g03013.1	sp|Q9C810|Y1342_ARATH	*-*-	PHD finger protein		
Niben101Scf00254g00015.1	emb|CDY25548.1|	***-	BnaC09g11730D [Brassica napus]	IPR008511 (Protein BYPASS-related)	
Niben101Scf06789g00005.1	sp|Q9FKE6|CCT15_ARATH	*-*-	Cyclin-T1-5	IPR013763 (Cyclin-like)	
Niben101Scf13695g01013.1	sp|Q8U009|RL14_PYRFU	***-	50S ribosomal protein L14	IPR000218 (Ribosomal protein L14b/L23e), IPR023571 (Ribosomal protein L14 domain)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf17452g00011.1	AT3G24240.1	****	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07060g03010.1			Unknown protein		
Niben101Scf28267g00002.1			Unknown protein		
Niben101Scf07718g01007.1	emb|CDY61112.1|	***-	BnaA06g39450D [Brassica napus]		
Niben101Scf07008g00034.1	AT1G15240.2	***-	Phox-associated domain;Phox-like;Sorting nexin, C-terminal LENGTH=1020	IPR001683 (Phox homologous domain), IPR003114 (Phox-associated domain), IPR013937 (Sorting nexin, C-terminal)	GO:0035091 (phosphatidylinositol binding)
Niben101Scf38767g00006.1	sp|P20238|MT1_ERYGU	***-	Metallothionein-like protein 1	IPR000347 (Metallothionein, family 15, plant)	GO:0046872 (metal ion binding)
Niben101Scf03266g01004.1	ref|XP_002518161.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF44294.1| conserved hypothetical protein [Ricinus communis]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf03445g04035.1			Unknown protein		
Niben101Scf05158g01072.1	emb|CDY66320.1|	*-*-	BnaCnng50280D [Brassica napus]		
Niben101Scf08446g00005.1	AT1G80270.1	***-	PENTATRICOPEPTIDE REPEAT 596 LENGTH=596	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03064g08007.1	sp|P78968|PPZ_SCHPO	***-	Serine/threonine-protein phosphatase PP-Z	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf09065g00005.1	sp|O23337|PP311_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf29357g00002.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00702g00020.1	ref|XP_002535265.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF27117.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00258g02006.1	sp|P0CB68|NDUS1_PONPY	****	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	IPR010228 (NADH:ubiquinone oxidoreductase, subunit G), IPR012675 (Beta-grasp domain), IPR015405 (NADH-quinone oxidoreductase, chain G, C-terminal)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0009055 (electron carrier activity), GO:0016020 (membrane), GO:0016491 (oxidoreductase activity), GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0051536 (iron-sulfur cluster binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03497g06004.1	emb|CDY12394.1|	--*-	BnaC08g08110D [Brassica napus]		
Niben101Scf02601g00001.1			Unknown protein		
Niben101Scf01942g01013.1	sp|Q5ZLL6|MSMO1_CHICK	*-*-	Methylsterol monooxygenase 1	IPR006694 (Fatty acid hydroxylase)	GO:0005506 (iron ion binding), GO:0006633 (fatty acid biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02374g00004.1	AT3G12120.1	***-	fatty acid desaturase 2 LENGTH=383	IPR005804 (Fatty acid desaturase, type 1), IPR021863 (Protein of unknown function DUF3474)	GO:0006629 (lipid metabolic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0055114 (oxidation-reduction process)
Niben101Scf03855g05006.1	AT5G10270.1	****	cyclin-dependent kinase C;1 LENGTH=505	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03595g10007.1	sp|P52855|RLA1_MAIZE	*-*-	60S acidic ribosomal protein P1	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf08526g01007.1	sp|B8CHZ1|RHLB_SHEPW	****	ATP-dependent RNA helicase RhlB	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf03489g00005.1	sp|Q03066|RPSC_NOSS1	*-**	RNA polymerase sigma-C factor	IPR014284 (RNA polymerase sigma-70 like domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Scf00925g01003.1	AT2G45180.1	***-	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein LENGTH=134	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf03006g02002.1			Unknown protein		
Niben101Scf00109g10004.1	sp|Q96509|PER55_ARATH	****	Peroxidase 55	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08137g05007.1	ref|XP_007037047.1|	*-*-	UPF0614 protein C14orf102, putative isoform 2 [Theobroma cacao] gb|EOY21548.1| UPF0614 protein C14orf102, putative isoform 2 [Theobroma cacao]		
Niben101Scf01822g03003.1			Unknown protein		
Niben101Scf02854g05001.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08465g03015.1	ref|XP_003600718.1|	*-*-	Calmodulin-binding heat-shock protein [Medicago truncatula]		
Niben101Scf12159g07007.1	AT3G63320.1	*-**	Protein phosphatase 2C family protein LENGTH=423	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf08679g03014.1	sp|Q4I7K4|DED1_GIBZE	*-**	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01012g01015.1	AT5G43890.1	*-*-	Flavin-binding monooxygenase family protein LENGTH=424		
Niben101Scf00949g02006.1	ref|NP_001047002.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf03600g01010.1	AT1G76640.1	****	Calcium-binding EF-hand family protein LENGTH=159	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00343g08006.1	gb|AGC78863.1|	*-*-	cytochrome b biogenesis FN (mitochondrion) [Vicia faba]		
Niben101Scf11689g01017.1	sp|A2C0L8|MURE_PROM1	****	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase	IPR005761 (UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0008360 (regulation of cell shape), GO:0009058 (biosynthetic process), GO:0016874 (ligase activity), GO:0016881 (acid-amino acid ligase activity), GO:0051301 (cell division)
Niben101Scf04417g00001.1	sp|Q2RM86|PSTB_MOOTA	****	Phosphate import ATP-binding protein PstB	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf06662g02023.1	emb|CDX97128.1|	--*-	BnaC09g44970D [Brassica napus]		
Niben101Scf12935g00038.1	AT1G76350.1	***-	Plant regulator RWP-RK family protein LENGTH=808		
Niben101Scf08266g00003.1	sp|O23482|OPT3_ARATH	***-	Oligopeptide transporter 3	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf09523g00005.1	AT5G12890.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=488	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03824g02006.1	sp|Q9HSF6|RNH_HALSA	--*-	Ribonuclease HI		
Niben101Scf10502g00009.1	sp|Q9XZE5|PP2AA_DICDI	***-	Serine/threonine-protein phosphatase 2A catalytic subunit A	IPR029052 (Metallo-dependent phosphatase-like)	GO:0016787 (hydrolase activity)
Niben101Scf06986g02003.1	sp|Q8L8Q3|LBD25_ARATH	***-	LOB domain-containing protein 25	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf06888g02003.1	ref|XP_002524800.1|	****	transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF37643.1| transferase, transferring glycosyl groups, putative [Ricinus communis]	IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf06094g00007.1			Unknown protein		
Niben101Scf04795g01013.1	sp|Q9I969|TXLNB_CHICK	*-*-	Beta-taxilin	IPR026183 (Taxilin family)	GO:0019905 (syntaxin binding)
Niben101Scf03548g00001.1	sp|G2TRS3|KISH_SCHPO	*-*-	Protein kish	IPR009653 (Protein of unknown function DUF1242)	
Niben101Scf04120g03015.1	sp|Q56XR7|STR4A_ARATH	***-	Rhodanese-like domain-containing protein 4A, chloroplastic	IPR001763 (Rhodanese-like domain)	
Niben101Scf01267g01009.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02217g04005.1	sp|Q9SQI9|PROF_ARAHY	***-	Profilin	IPR005455 (Profilin), IPR027310 (Profilin conserved site)	GO:0003779 (actin binding)
Niben101Scf03238g02004.1	sp|Q9STR4|1A17_ARATH	*-*-	1-aminocyclopropane-1-carboxylate synthase 7	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf27945g00014.1	AT3G61980.1	***-	serine protease inhibitor, Kazal-type family protein LENGTH=117		
Niben101Scf02451g00008.1	sp|Q9M088|E135_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 5	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00691g01002.1	AT2G25180.1	*-*-	response regulator 12 LENGTH=596	IPR009057 (Homeodomain-like), IPR011006 (CheY-like superfamily), IPR017053 (Response regulator, plant B-type)	GO:0000160 (phosphorelay signal transduction system), GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07984g04008.1	ref|XP_003589925.1|	***-	ATFP4-like protein [Medicago truncatula]		
Niben101Scf02763g03010.1			Unknown protein		
Niben101Scf03962g01006.1	sp|Q3SZ19|PSMD9_BOVIN	--*-	26S proteasome non-ATPase regulatory subunit 9	IPR001478 (PDZ domain)	GO:0005515 (protein binding)
Niben101Scf07849g01004.1	sp|B5FZA8|LYRM4_TAEGU	***-	LYR motif-containing protein 4	IPR008011 (Complex 1 LYR protein)	
Niben101Scf12266g06005.1	emb|CDY40149.1|	-**-	BnaC06g05400D [Brassica napus]		
Niben101Scf21484g01001.1	ref|XP_003615165.1|	*-*-	DUF246 domain-containing protein [Medicago truncatula]	IPR019378 (GDP-fucose protein O-fucosyltransferase)	
Niben101Scf00603g03021.1	sp|Q9ZPY1|PPOX2_ARATH	****	Pyridoxine/pyridoxamine 5'-phosphate oxidase 2	IPR000659 (Pyridoxamine 5'-phosphate oxidase), IPR024015 (Pyridoxamine 5'-phosphate oxidase, probable FMN-dependent, Alr4036 family), IPR024624 (Pyridoxamine 5'-phosphate oxidase, Alr4036 family, FMN-binding domain)	GO:0004733 (pyridoxamine-phosphate oxidase activity), GO:0008615 (pyridoxine biosynthetic process), GO:0010181 (FMN binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00031g01005.1	sp|Q9FLV4|Y5248_ARATH	*-*-	G-type lectin S-receptor-like serine/threonine-protein kinase	IPR001480 (Bulb-type lectin domain)	
Niben101Scf00056g04002.1	sp|Q9MB58|F26_ARATH	*-**	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase	IPR003094 (Fructose-2,6-bisphosphatase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003824 (catalytic activity), GO:0003873 (6-phosphofructo-2-kinase activity), GO:0005524 (ATP binding), GO:0006000 (fructose metabolic process), GO:0006003 (fructose 2,6-bisphosphate metabolic process)
Niben101Scf00180g05010.1			Unknown protein		
Niben101Scf06028g00007.1	sp|P93564|GPA1_SOLTU	****	Guanine nucleotide-binding protein alpha-1 subunit	IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0007186 (G-protein coupled receptor signaling pathway), GO:0019001 (guanyl nucleotide binding), GO:0031683 (G-protein beta/gamma-subunit complex binding)
Niben101Scf08549g00011.1	sp|P19037|HS181_ARATH	***-	18.1 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf04529g00011.1	sp|A4QK94|RR2_BARVE	****	30S ribosomal protein S2, chloroplastic	IPR000568 (ATPase, F0 complex, subunit A), IPR001865 (Ribosomal protein S2), IPR023591 (Ribosomal protein S2, flavodoxin-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015935 (small ribosomal subunit), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf03128g09014.1	AT5G05320.1	****	FAD/NAD(P)-binding oxidoreductase family protein LENGTH=406	IPR003042 (Aromatic-ring hydroxylase-like)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf16406g01012.1	sp|P00326|ADH1G_HUMAN	***-	Alcohol dehydrogenase 1C	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01510g00003.1	ref|XP_002532058.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF30330.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf07987g01009.1	sp|P57263|NUOM_BUCAI	*-**	NADH-quinone oxidoreductase subunit M	IPR003918 (NADH:ubiquinone oxidoreductase)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf06117g04001.1			Unknown protein		
Niben101Ctg00317g00003.1	sp|Q8L8Q3|LBD25_ARATH	*-*-	LOB domain-containing protein 25	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf08698g02001.1	emb|CDY17257.1|	***-	BnaA05g09310D [Brassica napus]		
Niben101Scf00854g11126.1			Unknown protein		
Niben101Scf06252g01011.1			Unknown protein		
Niben101Scf07938g00001.1	emb|CDY28677.1|	***-	BnaCnng05630D [Brassica napus]		
Niben101Scf08167g00004.1			Unknown protein		
Niben101Scf32858g00002.1	sp|Q9LSL1|BH093_ARATH	***-	Transcription factor bHLH93	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00214g03009.1	AT4G28230.1	***-	unknown protein; Has 444 Blast hits to 358 proteins in 107 species: Archae - 0; Bacteria - 20; Metazoa - 179; Fungi - 26; Plants - 38; Viruses - 2; Other Eukaryotes - 179 (source: NCBI BLink). LENGTH=402		
Niben101Scf06387g01015.1			Unknown protein		
Niben101Scf08156g10011.1	sp|Q9W0P5|GALE_DROME	*-*-	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain), IPR029903 (RmlD-like substrate binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf04651g00001.1	sp|A7M956|RPOC2_CUSRE	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf01765g03014.1	AT1G29510.1	***-	SAUR-like auxin-responsive protein family LENGTH=143	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf02024g02006.1	sp|Q9D099|ACER3_MOUSE	***-	Alkaline ceramidase 3	IPR008901 (Ceramidase)	GO:0006672 (ceramide metabolic process), GO:0016021 (integral component of membrane), GO:0016811 (hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides)
Niben101Scf00077g05011.1	sp|Q9CR16|PPID_MOUSE	*-*-	Peptidyl-prolyl cis-trans isomerase D	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR011990 (Tetratricopeptide-like helical domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0005515 (protein binding), GO:0006457 (protein folding)
Niben101Scf01301g01005.1	sp|Q9SZY4|PTR27_ARATH	***-	Protein NRT1/ PTR FAMILY 6.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0006857 (oligopeptide transport), GO:0016020 (membrane)
Niben101Scf10344g01006.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf00006g02004.1	ref|XP_002511479.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF52081.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00390g03001.1	sp|Q6NKX1|PROD2_ARATH	****	Proline dehydrogenase 2, mitochondrial	IPR015659 (Proline oxidase), IPR029041 (FAD-linked oxidoreductase-like)	GO:0004657 (proline dehydrogenase activity), GO:0006562 (proline catabolic process)
Niben101Scf13118g00028.1	sp|O81416|GUN17_ARATH	***-	Endoglucanase 17	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf09432g00006.1	sp|P92962|PROT2_ARATH	***-	Proline transporter 2	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf13361g01007.1	AT5G59110.1	*-*-	subtilisin-like serine protease-related LENGTH=172	IPR015500 (Peptidase S8, subtilisin-related)	
Niben101Scf05952g00001.1	sp|Q9SGS2|HMGB9_ARATH	***-	High mobility group B protein 9	IPR009071 (High mobility group box domain)	
Niben101Scf29144g00004.1			Unknown protein		
Niben101Scf05081g00013.1			Unknown protein		
Niben101Scf11961g00003.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf02164g05013.1	sp|B9DG24|TAF7_ARATH	****	Transcription initiation factor TFIID subunit 7	IPR006751 (TAFII55 protein, conserved region)	GO:0005669 (transcription factor TFIID complex), GO:0006367 (transcription initiation from RNA polymerase II promoter)
Niben101Scf03116g03004.1	sp|Q8L9Y0|SCP25_ARATH	****	Serine carboxypeptidase-like 25	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf06305g04015.1	sp|Q9SUQ8|DIR6_ARATH	***-	Dirigent protein 6	IPR004265 (Plant disease resistance response protein)	
Niben101Scf01789g02039.1	sp|P84634|DCL4_ARATH	*-*-	Dicer-like protein 4	IPR011545 (DEAD/DEAH box helicase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf05942g00003.1	sp|Q9SSG3|HIPL1_ARATH	***-	HIPL1 protein	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016901 (oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor), GO:0048038 (quinone binding)
Niben101Scf05249g07008.1	sp|Q6AJW3|MSBA_DESPS	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf13854g01007.1	AT5G49890.1	****	chloride channel C LENGTH=779	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf02280g08005.1	sp|O04197|COI1_ARATH	***-	Coronatine-insensitive protein 1		
Niben101Scf01066g04001.1	sp|Q5ZUH9|MSBA_LEGPH	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf05962g04009.1	sp|A3LZZ0|H2A1_PICST	***-	Histone H2A.1	IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf04114g02043.1	sp|A5VAM7|NUOH_SPHWW	*-*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf05387g08004.1	sp|A9LNK9|CPSF_ARATH	--*-	30-kDa cleavage and polyadenylation specificity factor 30		
Niben101Scf00229g03005.1	sp|Q504N0|CBPA2_MOUSE	--**	Carboxypeptidase A2	IPR000834 (Peptidase M14, carboxypeptidase A)	GO:0004181 (metallocarboxypeptidase activity), GO:0006508 (proteolysis), GO:0008270 (zinc ion binding)
Niben101Scf02417g02002.1			Unknown protein		
Niben101Scf02831g06010.1	AT3G13800.1	***-	Metallo-hydrolase/oxidoreductase superfamily protein LENGTH=361	IPR001279 (Beta-lactamase-like)	
Niben101Scf13710g03014.1	AT4G36790.1	***-	Major facilitator superfamily protein LENGTH=489	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00905g14011.1	sp|Q7Y223|MAN2_ARATH	***-	Mannan endo-1,4-beta-mannosidase 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf11962g00001.1			Unknown protein		
Niben101Scf37350g00001.1			Unknown protein		
Niben101Scf01486g02004.1	AT4G31170.1	*-**	Protein kinase superfamily protein LENGTH=412	IPR002912 (ACT domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0008152 (metabolic process), GO:0016597 (amino acid binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05060g03005.1	sp|Q9LHF0|ZHD9_ARATH	***-	Zinc-finger homeodomain protein 9	IPR006456 (ZF-HD homeobox protein, Cys/His-rich dimerisation domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf07103g00009.1	gb|KEH39495.1|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf03436g01013.1	ref|XP_007046399.1|	*-*-	Stress responsive alpha-beta barrel domain protein isoform 5 [Theobroma cacao] gb|EOY02231.1| Stress responsive alpha-beta barrel domain protein isoform 5 [Theobroma cacao]	IPR011008 (Dimeric alpha-beta barrel)	
Niben101Ctg16349g00003.1	AT5G49800.1	*-*-	Polyketide cyclase/dehydrase and lipid transport superfamily protein LENGTH=242	IPR023393 (START-like domain)	
Niben101Scf11153g00001.1	AT3G13062.2	****	Polyketide cyclase/dehydrase and lipid transport superfamily protein LENGTH=440	IPR002913 (START domain), IPR023393 (START-like domain)	GO:0008289 (lipid binding)
Niben101Scf01802g02001.1	sp|O48653|DPOLA_ORYSJ	****	DNA polymerase alpha catalytic subunit	IPR006172 (DNA-directed DNA polymerase, family B), IPR023211 (DNA polymerase, palm domain), IPR024647 (DNA polymerase alpha catalytic subunit, N-terminal domain)	GO:0000166 (nucleotide binding), GO:0001882 (nucleoside binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication), GO:0006270 (DNA replication initiation)
Niben101Scf07650g00005.1	gb|ABF97674.1|	--*-	expressed protein [Oryza sativa Japonica Group]	IPR010285 (DNA helicase Pif1 like)	GO:0000723 (telomere maintenance), GO:0003678 (DNA helicase activity), GO:0006281 (DNA repair)
Niben101Scf07944g05004.1	sp|Q54JC8|PUR4_DICDI	*-*-	Phosphoribosylformylglycinamidine synthase		
Niben101Scf02937g03011.1	sp|Q9SS67|PER28_ARATH	****	Peroxidase 28	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10036g05001.1	sp|O97572|RAB7A_RABIT	***-	Ras-related protein Rab-7a	IPR003579 (Small GTPase superfamily, Rab type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Ctg01914g00001.1			Unknown protein		
Niben101Scf00096g05003.1	emb|CCQ71668.1|	*-*-	Ycf1 (chloroplast) [Salvia miltiorrhiza]	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf02105g00002.1	sp|Q6AYJ1|RECQ1_RAT	*-**	ATP-dependent DNA helicase Q1	IPR002121 (HRDC domain), IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR018982 (RQC domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0003824 (catalytic activity), GO:0005622 (intracellular), GO:0006260 (DNA replication), GO:0006281 (DNA repair), GO:0043140 (ATP-dependent 3'-5' DNA helicase activity), GO:0044237 (cellular metabolic process)
Niben101Scf00854g10052.1	sp|A0M791|ATPB_GRAFK	*-**	ATP synthase subunit beta	IPR005722 (ATPase, F1 complex, beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0015986 (ATP synthesis coupled proton transport), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Scf08921g02008.1	sp|P43508|CPR4_CAEEL	--**	Cathepsin B-like cysteine proteinase 4	IPR013128 (Peptidase C1A), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00293g00004.1	gb|ABB17073.1|	***-	bZIP transcription factor [Capsicum annuum]		
Niben101Scf01165g00005.1			Unknown protein		
Niben101Scf09620g01001.1	sp|Q9SZD4|PRS4A_ARATH	*-*-	26S proteasome regulatory subunit 4 homolog A	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf05645g05007.1	AT1G21930.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=98		
Niben101Scf05855g05001.1			Unknown protein		
Niben101Scf06691g00001.1	gb|KEH42144.1|	*-*-	glutamate-ammonia ligase-like protein [Medicago truncatula]		
Niben101Scf16105g00001.1	sp|Q58CV5|SPX2_BOVIN	***-	Sugar phosphate exchanger 2	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02646g03015.1	sp|P48979|PGLR_PRUPE	****	Polygalacturonase	IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004650 (polygalacturonase activity), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07155g01007.1	sp|Q9FGF0|PGML1_ARATH	***-	Phosphoglycerate mutase-like protein 1	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf00120g00010.1	sp|Q42920|PME_MEDSA	****	Pectinesterase/pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf06942g02007.1	sp|Q5QA72|RPOB_ACOGR	--**	DNA-directed RNA polymerase subunit beta	IPR007120 (DNA-directed RNA polymerase, subunit 2, domain 6)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated)
Niben101Ctg16294g00006.1	emb|CDX96685.1|	*-*-	BnaA08g22280D [Brassica napus]		
Niben101Scf11585g00014.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02207g00010.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf11944g02005.1	sp|O49686|PYR1_ARATH	***-	Abscisic acid receptor PYR1	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf11389g01034.1	sp|Q9LZM4|WAKLQ_ARATH	--*-	Wall-associated receptor kinase-like 20	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf02283g00026.1	sp|O93632|EF2_METBU	--*-	Elongation factor 2		
Niben101Scf00854g06034.1	sp|Q7J1C4|PSBL_ACOCL	*-**	Photosystem II reaction center protein L	IPR003372 (Photosystem II PsbL), IPR013081 (Photosystem II cytochrome b559, N-terminal)	GO:0009523 (photosystem II), GO:0009539 (photosystem II reaction center), GO:0015979 (photosynthesis), GO:0016020 (membrane)
Niben101Scf00199g04004.1	sp|B6JY16|SLX1_SCHJY	*-*-	Structure-specific endonuclease subunit slx1	IPR000305 (GIY-YIG nuclease superfamily)	
Niben101Scf02174g03009.1	sp|O81865|P2A01_ARATH	***-	Protein PHLOEM PROTEIN 2-LIKE A1	IPR025886 (Phloem protein 2-like)	
Niben101Scf15645g02010.1	sp|Q8GZ84|PUB36_ARATH	--*-	U-box domain-containing protein 36	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0006950 (response to stress)
Niben101Scf04260g02020.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06093g00006.1			Unknown protein		
Niben101Scf05025g07002.1	ref|XP_003620991.1|	*-*-	Histone H4 [Medicago truncatula]	IPR025836 (Zinc knuckle CX2CX4HX4C)	
Niben101Scf02887g01014.1	sp|Q3T0X9|DPOD4_BOVIN	*-**	DNA polymerase delta subunit 4	IPR007218 (DNA polymerase delta, subunit 4)	GO:0005634 (nucleus), GO:0006260 (DNA replication)
Niben101Scf02650g03003.1	sp|Q9X248|FABG_THEMA	*-**	3-oxoacyl-[acyl-carrier-protein] reductase FabG	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf04457g03004.1	sp|Q766C3|NEP1_NEPGR	--*-	Aspartic proteinase nepenthesin-1	IPR021109 (Aspartic peptidase domain)	
Niben101Scf02364g01002.1	gb|AIU50623.1|	--*-	ATP synthase protein I-related protein, partial [Theobroma cacao]		
Niben101Ctg12777g00003.1	sp|P00303|BABL_CUCSA	***-	Basic blue protein	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf23606g00007.1	sp|C5BDY7|MDTK_EDWI9	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf09065g00001.1	sp|Q9FIK1|Y5780_ARATH	*-*-	BTB/POZ domain-containing protein	IPR027356 (NPH3 domain), IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0009958 (positive gravitropism)
Niben101Scf01695g01016.1	AT4G16380.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=254	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf05615g01001.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001480 (Bulb-type lectin domain), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13571g03004.1	ref|WP_011782278.1|	*-**	protease [Mycobacterium vanbaalenii] ref|YP_955914.1| oligopeptidase B [Mycobacterium vanbaalenii PYR-1] gb|ABM15908.1| oligopeptidase B, Serine peptidase, MEROPS family S09A [Mycobacterium vanbaalenii PYR-1]	IPR002470 (Peptidase S9A, prolyl oligopeptidase), IPR023302 (Peptidase S9A, N-terminal domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0070008 (serine-type exopeptidase activity)
Niben101Scf15496g02013.1	sp|Q9WTQ1|KPCD1_RAT	*-**	Serine/threonine-protein kinase D1	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf13957g00003.1			Unknown protein		
Niben101Scf04103g09013.1	sp|Q8K1A0|METL5_MOUSE	***-	Methyltransferase-like protein 5	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf06249g00006.1	gb|EMS64599.1|	*-*-	Peroxiredoxin Q, chloroplastic [Triticum urartu]		
Niben101Scf06919g00004.1	sp|P70245|EBP_MOUSE	****	3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase	IPR007905 (Emopamil-binding protein)	GO:0016021 (integral component of membrane), GO:0016125 (sterol metabolic process), GO:0047750 (cholestenol delta-isomerase activity)
Niben101Scf14482g00003.1	ref|YP_009091709.1|	*-*-	orf109 (mitochondrion) [Panax ginseng] gb|AHJ81034.1| orf109 (mitochondrion) [Panax ginseng]		
Niben101Scf06737g00029.1	AT1G24130.1	*-*-	Transducin/WD40 repeat-like superfamily protein LENGTH=415	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf36316g00001.1	sp|O04609|WRK22_ARATH	*-**	WRKY transcription factor 22	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02059g02014.1			Unknown protein		
Niben101Scf07322g00014.1	AT3G26560.1	*-**	ATP-dependent RNA helicase, putative LENGTH=1168	IPR012340 (Nucleic acid-binding, OB-fold), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf02423g03002.1	AT1G34320.1	*-*-	Protein of unknown function (DUF668) LENGTH=657		
Niben101Scf02133g07001.1	AT5G47750.1	****	D6 protein kinase like 2 LENGTH=586	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07391g04031.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05156g01011.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf04925g00010.1	emb|CDX78312.1|	*-*-	BnaA03g02240D [Brassica napus]		
Niben101Scf05627g00004.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf11232g01011.1	gb|ABB69784.1|	****	beta-glucan-binding protein 4 [Medicago truncatula]	IPR005200 (Endo-1,3(4)-beta-glucanase)	GO:0016998 (cell wall macromolecule catabolic process), GO:0052861 (glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group), GO:0052862 (glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group)
Niben101Scf09016g00005.1	AT5G39990.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=447	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf01818g09008.1	gb|ACG38839.1|	***-	snRK1-interacting protein 1 [Zea mays]		
Niben101Scf01213g00017.1	sp|Q03164|KMT2A_HUMAN	--*-	Histone-lysine N-methyltransferase 2A		
Niben101Scf18080g00006.1	sp|A7RK30|QORL2_NEMVE	****	Quinone oxidoreductase-like protein 2 homolog	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf01876g01007.1	sp|Q94AH6|CUL1_ARATH	*-**	Cullin-1	IPR001373 (Cullin, N-terminal)	GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0031461 (cullin-RING ubiquitin ligase complex), GO:0031625 (ubiquitin protein ligase binding)
Niben101Scf12127g00004.1	sp|Q9LHJ8|SAP5_ARATH	*-**	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	IPR000058 (Zinc finger, AN1-type)	GO:0008270 (zinc ion binding)
Niben101Scf08001g01009.1	gb|ACG48694.1|	***-	mitotic checkpoint protein BUB3 [Zea mays]	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf08546g05002.1	sp|Q9LW48|ERF5_NICSY	****	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02081g02027.1	sp|A4IJ27|ROGF3_ARATH	****	Rop guanine nucleotide exchange factor 3	IPR005512 (PRONE domain)	GO:0005089 (Rho guanyl-nucleotide exchange factor activity)
Niben101Scf11188g00004.1			Unknown protein		
Niben101Scf04669g02010.1	sp|Q9CR95|NECP1_MOUSE	***-	Adaptin ear-binding coat-associated protein 1	IPR011993 (Pleckstrin homology-like domain), IPR012466 (Adaptin ear-binding coat-associated protein 1 NECAP-1)	GO:0006897 (endocytosis), GO:0016020 (membrane)
Niben101Scf14479g00001.1	sp|P62318|SMD3_HUMAN	*-*-	Small nuclear ribonucleoprotein Sm D3	IPR010920 (Like-Sm (LSM) domain), IPR027141 (U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3)	
Niben101Ctg10609g00004.1	sp|P60753|MSBA_ECO57	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf08123g00001.1	AT5G01210.1	****	HXXXD-type acyl-transferase family protein LENGTH=475	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf06397g03001.1	sp|Q42580|PER21_ARATH	****	Peroxidase 21	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04727g01001.1			Unknown protein		
Niben101Scf11524g00007.1	AT1G48480.1	****	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04375g09001.1	sp|O94707|RXT3_SCHPO	*-*-	Transcriptional regulatory protein rxt3	IPR004043 (LCCL domain), IPR013951 (Histone deacetylation protein Rxt3)	
Niben101Scf00085g01007.1	sp|P41099|RLA2_PARAR	*-*-	60S acidic ribosomal protein P2	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf06537g00004.1	sp|Q9LF10|CRS1_ARATH	***-	Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic	IPR001890 (RNA-binding, CRM domain)	GO:0003723 (RNA binding)
Niben101Scf14458g00011.1	ref|XP_007025344.1|	--*-	Leucine-rich repeat protein kinase family protein [Theobroma cacao] gb|EOY27966.1| Leucine-rich repeat protein kinase family protein [Theobroma cacao]		
Niben101Scf04485g01002.1	emb|CDY22314.1|	*-*-	BnaA06g36360D [Brassica napus]		
Niben101Scf06043g01008.1	gb|ABS88747.1|	*-*-	sister chromatid cohesion protein [Arabidopsis thaliana]		
Niben101Scf01384g02001.1			Unknown protein		
Niben101Scf08472g00012.1	emb|CDY18673.1|	*-*-	BnaA09g07220D [Brassica napus]		
Niben101Scf01557g05005.1	AT2G36770.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf03115g02003.1	AT4G27790.1	****	Calcium-binding EF hand family protein LENGTH=345	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00069g14019.1	sp|P80387|AAKB1_PIG	-**-	5'-AMP-activated protein kinase subunit beta-1	IPR014756 (Immunoglobulin E-set)	
Niben101Scf02694g02012.1	gb|AAQ72561.1|	*-*-	ent-kaurene synthase 1C [Oryza sativa Japonica Group]	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	
Niben101Scf02553g02004.1			Unknown protein		
Niben101Scf01749g01017.1	sp|B2FM90|ZUPT_STRMK	****	Zinc transporter ZupT	IPR003689 (Zinc/iron permease)	GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf00922g01010.1	sp|P55852|SUMO1_ARATH	--*-	Small ubiquitin-related modifier 1		
Niben101Scf08272g00018.1	AT3G60830.1	***-	actin-related protein 7 LENGTH=363	IPR004000 (Actin family)	GO:0005634 (nucleus), GO:0006325 (chromatin organization), GO:0032502 (developmental process)
Niben101Scf10900g01021.1	sp|P53756|PDR18_YEAST	*-**	ABC transporter ATP-binding protein/permease PDR18	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029481 (ABC-transporter extracellular N-terminal domain)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf07383g03006.1	ref|WP_017965293.1|	***-	LPS:glycosyltransferase [Rhizobium leguminosarum]	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf01357g00008.1	sp|Q5ZRU1|NUOD_LEGPH	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Ctg15741g00002.1	sp|Q7L0R7|RNF44_HUMAN	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01249g06013.1	ref|XP_003630569.1|	***-	Mitochondrial phosphate carrier protein [Medicago truncatula]	IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain)	
Niben101Scf01611g07009.1	ref|WP_029509159.1|	***-	transcriptional regulator [Leuconostoc lactis]	IPR002876 (Transcriptional regulator TACO1-like), IPR026563 (Transcriptional regulator TACO1-like, domain 2), IPR026564 (Transcriptional regulator TACO1-like, domain 3), IPR029072 (YebC-like)	
Niben101Scf05342g03004.1	AT3G26560.1	*-**	ATP-dependent RNA helicase, putative LENGTH=1168	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf08680g02016.1	sp|Q9ES00|UBE4B_MOUSE	****	Ubiquitin conjugation factor E4 B	IPR019474 (Ubiquitin conjugation factor E4, core)	GO:0000151 (ubiquitin ligase complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0016567 (protein ubiquitination), GO:0034450 (ubiquitin-ubiquitin ligase activity)
Niben101Scf02483g05002.1	AT5G08250.1	***-	Cytochrome P450 superfamily protein LENGTH=488	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00781g06018.1	AT5G05170.1	****	Cellulose synthase family protein LENGTH=1065	IPR005150 (Cellulose synthase), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf01596g08003.1	gb|AFW84079.1|	***-	secondary cell wall glycosyltransferase family 47 [Zea mays]	IPR004263 (Exostosin-like)	
Niben101Scf04711g00017.1	sp|O70196|PPCE_RAT	****	Prolyl endopeptidase	IPR002470 (Peptidase S9A, prolyl oligopeptidase), IPR023302 (Peptidase S9A, N-terminal domain), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0008236 (serine-type peptidase activity), GO:0070008 (serine-type exopeptidase activity)
Niben101Scf00497g09006.1	sp|Q9LHP4|RCH2_ARATH	*-**	Receptor-like protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01025g13013.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00291g02053.1			Unknown protein		
Niben101Scf03154g05001.1			Unknown protein		
Niben101Scf15752g00007.1	AT4G02930.1	*-**	GTP binding Elongation factor Tu family protein LENGTH=454	IPR005225 (Small GTP-binding protein domain), IPR006298 (GTP-binding protein TypA), IPR009000 (Translation protein, beta-barrel domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf04104g08002.1	ref|XP_002511612.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF50281.1| conserved hypothetical protein [Ricinus communis]	IPR012438 (Protein of unknown function DUF1639)	
Niben101Scf26545g00001.1	sp|Q7XVM8|TIR1B_ORYSJ	***-	Transport inhibitor response 1-like protein	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf11670g02004.1	AT5G24470.1	*-*-	pseudo-response regulator 5 LENGTH=667	IPR010402 (CCT domain), IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system), GO:0005515 (protein binding)
Niben101Scf02812g01002.1	sp|Q79666|POL_HV1MV	--*-	Gag-Pol polyprotein	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Ctg03382g00001.1	AT3G11560.2	*-*-	LETM1-like protein LENGTH=872		
Niben101Scf06671g03024.1	sp|Q39649|2SS_CUCMA	--*-	2S albumin	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf08940g01037.1	sp|P35817|BDF1_YEAST	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf01847g01013.1	AT4G34860.1	***-	Plant neutral invertase family protein LENGTH=571	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf01094g03016.1	sp|O80341|EF102_ARATH	*-**	Ethylene-responsive transcription factor 5	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02339g01015.1			Unknown protein		
Niben101Scf07162g05014.1	sp|Q9C9V6|Y1790_ARATH	*-*-	BTB/POZ domain-containing protein	IPR027356 (NPH3 domain), IPR029960 (BTB/POZ domain-containing protein NPY2-5)	GO:0009958 (positive gravitropism)
Niben101Scf06709g02002.1	sp|Q39491|PTP3_CHLMO	--**	Dual specificity protein phosphatase	IPR014756 (Immunoglobulin E-set), IPR029021 (Protein-tyrosine phosphatase-like), IPR030079 (Phosphoglucan phosphatase DSP4)	GO:0005982 (starch metabolic process), GO:0006470 (protein dephosphorylation), GO:0007623 (circadian rhythm), GO:0008138 (protein tyrosine/serine/threonine phosphatase activity), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity), GO:0019203 (carbohydrate phosphatase activity)
Niben101Scf07482g01007.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf20744g00001.1			Unknown protein		
Niben101Scf02423g02014.1	sp|Q03FR6|DNAJ_PEDPA	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf07944g03004.1	sp|Q94AN4|AP2L1_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00682g01002.1	emb|CDY29579.1|	*-*-	BnaA03g54240D [Brassica napus]	IPR008889 (VQ)	
Niben101Scf22999g00006.1			Unknown protein		
Niben101Scf02522g01005.1	sp|Q9FX64|HOP2_ARATH	***-	Homologous-pairing protein 2 homolog	IPR010776 (Tat binding protein 1-interacting), IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf01002g02005.1	sp|Q9N1Q9|CABP2_BOVIN	--**	Calcium-binding protein 2	IPR004837 (Sodium/calcium exchanger membrane region), IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf01887g01001.1	sp|Q03237|MYBB_CHICK	*-*-	Myb-related protein B	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00318g05002.1	AT2G40120.1	*-**	Protein kinase superfamily protein LENGTH=570	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01064g04007.1	sp|Q7XR52|CYSP1_ORYSJ	****	Cysteine protease 1	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf00894g03020.1	sp|Q9M884|MPI1_ARATH	****	Mannose-6-phosphate isomerase 1	IPR001250 (Mannose-6-phosphate isomerase, type I)	GO:0004476 (mannose-6-phosphate isomerase activity), GO:0005975 (carbohydrate metabolic process), GO:0008270 (zinc ion binding), GO:0009298 (GDP-mannose biosynthetic process)
Niben101Scf00912g05003.1	AT5G04820.1	***-	ovate family protein 13 LENGTH=260	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf02249g03002.1	sp|Q86Y33|CD20B_HUMAN	*-*-	Cell division cycle protein 20 homolog B	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf13240g00009.1			Unknown protein		
Niben101Scf00837g06004.1	AT5G22510.1	***-	alkaline/neutral invertase LENGTH=617	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf00159g08021.1	sp|O61125|STK4_DICDI	*-**	Serine/threonine-protein kinase 4 homolog A	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01230g01008.1	gb|KEH20025.1|	*-*-	protein disulfide isomerase (PDI)-like protein [Medicago truncatula]	IPR012336 (Thioredoxin-like fold)	GO:0045454 (cell redox homeostasis)
Niben101Scf07579g02009.1	gb|AFW84079.1|	***-	secondary cell wall glycosyltransferase family 47 [Zea mays]	IPR004263 (Exostosin-like)	
Niben101Scf01126g01001.1	ref|XP_002519182.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF43046.1| conserved hypothetical protein [Ricinus communis]	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf01196g00011.1	sp|Q6FRV0|NOG1_CANGA	--*-	Nucleolar GTP-binding protein 1		
Niben101Scf01701g02001.1	AT3G53210.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=369	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf02622g04003.1	sp|Q6PBD6|WDR61_XENTR	--*-	WD repeat-containing protein 61	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf19057g00005.1	sp|O80338|EF101_ARATH	*-**	Ethylene-responsive transcription factor 2	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00151g03003.1	sp|Q9XI36|MBD10_ARATH	*-**	Methyl-CpG-binding domain-containing protein 10	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf01620g02009.1	sp|Q5ZLX5|ZRAB2_CHICK	--**	Zinc finger Ran-binding domain-containing protein 2	IPR001876 (Zinc finger, RanBP2-type)	GO:0008270 (zinc ion binding)
Niben101Scf04815g00005.1	emb|CDX98312.1|	--*-	BnaC06g16730D [Brassica napus]	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf04950g01005.1	sp|Q9XJ66|MAD22_ORYSJ	****	MADS-box transcription factor 22	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf00225g07019.1	emb|CAD41269.1|	***-	product [Oryza sativa Japonica Group]	IPR007608 (Senescence regulator S40)	
Niben101Scf05516g00008.1	sp|Q95ZI6|PITH1_CAEEL	--*-	PITH domain-containing protein ZK353.9		
Niben101Scf01653g01002.1	gb|ACU31828.1|	***-	self-incompatibility protein [Argemone munita]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf02497g01012.1	AT4G00570.1	****	NAD-dependent malic enzyme 2 LENGTH=607	IPR001891 (Malic oxidoreductase)	GO:0004470 (malic enzyme activity), GO:0004471 (malate dehydrogenase (decarboxylating) (NAD+) activity), GO:0006108 (malate metabolic process), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04048g00006.1			Unknown protein		
Niben101Scf00211g00018.1	sp|P45434|SSRA_ARATH	***-	Translocon-associated protein subunit alpha	IPR005595 (Translocon-associated protein (TRAP), alpha subunit)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf06235g00011.1	sp|Q9SFC7|FB135_ARATH	***-	F-box protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01240g10013.1	sp|Q91W18|TDRD3_MOUSE	*-*-	Tudor domain-containing protein 3	IPR013894 (Domain of unknown function DUF1767)	
Niben101Scf15720g00001.1	sp|P44933|KEFX_HAEIN	*-*-	Glutathione-regulated potassium-efflux system protein	IPR006153 (Cation/H+ exchanger)	GO:0006812 (cation transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf05325g00012.1	sp|Q5U231|ZFR_XENTR	--**	Zinc finger RNA-binding protein	IPR003604 (Zinc finger, U1-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf05082g04006.1	sp|Q93YN9|IPPK_ARATH	*-**	Inositol-pentakisphosphate 2-kinase	IPR009286 (Inositol-pentakisphosphate 2-kinase)	GO:0005524 (ATP binding), GO:0035299 (inositol pentakisphosphate 2-kinase activity)
Niben101Scf03188g00007.1	sp|Q94C77|RPKL_ARATH	****	Receptor protein kinase-like protein	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02253g06010.1	sp|Q9FM19|HIR1_ARATH	***-	Hypersensitive-induced response protein 1	IPR001107 (Band 7 protein)	GO:0016020 (membrane)
Niben101Scf01308g03014.1	emb|CDY24726.1|	*-*-	BnaC04g13310D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf00918g04012.1	sp|D0MGU8|FTSH_RHOM4	****	ATP-dependent zinc metalloprotease FtsH	IPR000642 (Peptidase M41), IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004222 (metalloendopeptidase activity), GO:0005524 (ATP binding), GO:0006508 (proteolysis)
Niben101Scf07399g00025.1	sp|O82352|RTNLE_ARATH	***-	Reticulon-like protein B5	IPR003388 (Reticulon)	
Niben101Scf05151g03018.1	ref|XP_002537033.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF25350.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03969g01010.1	sp|Q5E9Y6|PRUNE_BOVIN	*-*-	Protein prune homolog		
Niben101Scf01604g01005.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf02772g04003.1	AT3G02510.1	***-	Regulator of chromosome condensation (RCC1) family protein LENGTH=393	IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II)	
Niben101Scf04826g00001.1			Unknown protein		
Niben101Scf08097g02010.1			Unknown protein		
Niben101Scf05349g02002.1	sp|Q84WP6|NAC43_ARATH	*-*-	NAC domain-containing protein 43	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10737g01015.1	sp|Q39644|LEA5_CITSI	***-	Late embryogenesis abundant protein Lea5	IPR004926 (Late embryogenesis abundant protein, LEA-5)	GO:0006950 (response to stress)
Niben101Scf08643g03019.1	sp|Q9ZUW3|PP172_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf16089g00013.1	gb|AAU90303.2|	***-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf02405g05021.1	sp|Q9FN32|YIPL7_ARATH	***-	Protein yippee-like		
Niben101Ctg13559g00004.1	AT1G43650.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=343	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf05824g07006.1	ref|WP_025955003.1|	***-	MULTISPECIES: hypothetical protein [Prochlorococcus]	IPR004401 (Nucleoid-associated protein YbaB)	
Niben101Scf00596g02004.1	sp|Q9LTL0|C71BQ_ARATH	***-	Cytochrome P450 71B26	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05680g00027.1	sp|Q9M9V8|CDPKA_ARATH	*-**	Calcium-dependent protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01326g10014.1	sp|A7Z050|VIP1_BOVIN	*-*-	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1	IPR029033 (Histidine phosphatase superfamily)	GO:0003993 (acid phosphatase activity)
Niben101Scf02786g01028.1	AT1G73950.1	***-	Transmembrane Fragile-X-F-associated protein LENGTH=466	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR019396 (Transmembrane Fragile-X-F-associated protein)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02502g08002.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf12528g00002.1	sp|Q9FYC0|CHX12_ARATH	*-**	Cation/H(+) antiporter 12	IPR006153 (Cation/H+ exchanger), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf05475g01004.1	sp|Q7ZY56|HEAT6_XENLA	*-*-	HEAT repeat-containing protein 6	IPR016024 (Armadillo-type fold), IPR025283 (Domain of unknown function DUF4042)	GO:0005488 (binding)
Niben101Scf02600g00013.1	dbj|BAC23029.1|	--*-	tyramine hydroxycinnamoyl transferase [Solanum tuberosum]		
Niben101Scf00898g00002.1	AT1G10370.1	***-	Glutathione S-transferase family protein LENGTH=227	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf06864g00011.1	sp|A8LYC4|TRPD_SALAI	****	Anthranilate phosphoribosyltransferase	IPR005940 (Anthranilate phosphoribosyl transferase)	GO:0000162 (tryptophan biosynthetic process), GO:0004048 (anthranilate phosphoribosyltransferase activity), GO:0008152 (metabolic process), GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf09249g00013.1	sp|Q9HUG8|MSBA_PSEAE	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf10694g00006.1	sp|Q04716|RT03_PETHY	*-*-	Ribosomal protein S3, mitochondrial		
Niben101Scf00551g06025.1	sp|Q9M9A5|PCR6_ARATH	--*-	Protein PLANT CADMIUM RESISTANCE 6		
Niben101Ctg11944g00001.1	AT3G26310.1	***-	cytochrome P450, family 71, subfamily B, polypeptide 35 LENGTH=500	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03733g00011.1	sp|Q2M2R8|PEX5_RAT	***-	Peroxisomal targeting signal 1 receptor	IPR011990 (Tetratricopeptide-like helical domain), IPR024111 (Peroxisomal targeting signal 1 receptor family)	GO:0005515 (protein binding)
Niben101Scf03930g02021.1	gb|KEH39600.1|	***-	embryo-specific protein [Medicago truncatula]	IPR010417 (Embryo-specific 3)	
Niben101Scf02849g03005.1	sp|E1BK52|STK10_BOVIN	*-**	Serine/threonine-protein kinase 10	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06216g00007.1	AT1G79910.1	*-*-	Regulator of Vps4 activity in the MVB pathway protein LENGTH=381	IPR005061 (Domain of unknown function DUF292, eukaryotic)	
Niben101Scf06826g08015.1	sp|P18212|PSBP2_TOBAC	****	Oxygen-evolving enhancer protein 2-2, chloroplastic	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf13690g01010.1	sp|Q9ZTX9|ARFD_ARATH	****	Auxin response factor 4	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf15657g02014.1	sp|Q41238|LOX16_SOLTU	***-	Linoleate 9S-lipoxygenase 6	IPR000907 (Lipoxygenase), IPR027433 (Lipoxygenase, domain 3)	GO:0016491 (oxidoreductase activity), GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen), GO:0046872 (metal ion binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02188g02025.1	AT1G69690.1	*-*-	TCP family transcription factor LENGTH=325	IPR005333 (Transcription factor, TCP)	
Niben101Scf02044g05020.1	sp|Q8LPS6|PPR3_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf03006g03001.1			Unknown protein		
Niben101Scf06916g01027.1	sp|Q9VLR5|TCP4_DROME	****	RNA polymerase II transcriptional coactivator	IPR009044 (ssDNA-binding transcriptional regulator)	GO:0003677 (DNA binding), GO:0003713 (transcription coactivator activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf14297g01001.1	AT4G34730.1	***-	ribosome-binding factor A family protein LENGTH=215	IPR000238 (Ribosome-binding factor A), IPR015946 (K homology domain-like, alpha/beta)	GO:0006364 (rRNA processing)
Niben101Scf02525g05017.1	sp|Q8S403|PHO1_ARATH	*-*-	Phosphate transporter PHO1	IPR004331 (SPX, N-terminal)	
Niben101Scf03747g01013.1	AT2G23080.1	****	Protein kinase superfamily protein LENGTH=333	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03432g01012.1	sp|Q9LSQ4|GH36_ARATH	*-*-	Indole-3-acetic acid-amido synthetase GH3.6	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf00120g00012.1	AT3G06810.1	*-**	acyl-CoA dehydrogenase-related LENGTH=824	IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain), IPR011009 (Protein kinase-like domain), IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal)	GO:0003995 (acyl-CoA dehydrogenase activity), GO:0008152 (metabolic process), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08653g07017.1	AT1G73590.1	***-	Auxin efflux carrier family protein LENGTH=622	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03628g04001.1			Unknown protein		
Niben101Scf02622g12045.1	sp|Q4WA15|NTE1_ASPFU	--*-	Lysophospholipase nte1		
Niben101Scf01395g02015.1	sp|Q8LBA6|PIS1_ARATH	*-*-	CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1	IPR000462 (CDP-alcohol phosphatidyltransferase)	GO:0008654 (phospholipid biosynthetic process), GO:0016020 (membrane), GO:0016780 (phosphotransferase activity, for other substituted phosphate groups)
Niben101Scf01438g09003.1	AT5G57440.1	***-	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=240	IPR023214 (HAD-like domain)	
Niben101Scf05308g00004.1	sp|A0AV96|RBM47_HUMAN	--**	RNA-binding protein 47	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00428g15010.1	sp|Q9Z269|VAPB_RAT	*-**	Vesicle-associated membrane protein-associated protein B	IPR016763 (Vesicle-associated membrane-protein-associated protein)	GO:0005789 (endoplasmic reticulum membrane)
Niben101Scf17597g01002.1	sp|Q8RY18|Y5436_ARATH	***-	MATH domain-containing protein	IPR008974 (TRAF-like)	GO:0005515 (protein binding)
Niben101Scf05060g04018.1	sp|P41114|TPM1_PODCA	--*-	Tropomyosin-1		
Niben101Scf04083g04040.1	sp|P27541|HSP70_BRUMA	***-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf26301g00001.1	ref|XP_003588352.1|	*-*-	NADH dehydrogenase subunit [Medicago truncatula]		
Niben101Scf11361g00001.1	sp|P62302|RS13_SOYBN	***-	40S ribosomal protein S13	IPR000589 (Ribosomal protein S15), IPR012606 (Ribosomal protein S13/S15, N-terminal)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01005g11015.1	sp|Q9FE06|EXOL2_ARATH	***-	Protein EXORDIUM-like 2	IPR006766 (Phosphate-induced protein 1)	
Niben101Scf09870g00017.1	sp|Q6M2F0|FTSH_CORGL	*-**	ATP-dependent zinc metalloprotease FtsH	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf07442g01010.1	sp|Q9FIX3|PP407_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002625 (Smr protein/MutS2 C-terminal), IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05230g02010.1	AT3G27460.1	***-	SGF29 tudor-like domain LENGTH=270	IPR010750 (SGF29 tudor-like domain)	
Niben101Scf05845g03013.1	gb|AAK96836.1|	-**-	bZIP transcription factor-like protein [Arabidopsis thaliana] gb|AAM10056.1| unknown protein [Arabidopsis thaliana]		
Niben101Scf06017g02002.1	sp|P81392|MYB06_ANTMA	*-*-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03801g03005.1	AT3G55640.1	***-	Mitochondrial substrate carrier family protein LENGTH=332	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf00786g02012.1	emb|CDX79267.1|	***-	BnaC06g20360D [Brassica napus]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf03860g05006.1	sp|Q9M4T8|PSA5_SOYBN	****	Proteasome subunit alpha type-5	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf01123g01013.1	ref|XP_007039747.1|	--*-	RING/U-box superfamily protein, putative isoform 4 [Theobroma cacao] gb|EOY24248.1| RING/U-box superfamily protein, putative isoform 4 [Theobroma cacao]		
Niben101Scf07202g00007.1	sp|P52855|RLA1_MAIZE	*-*-	60S acidic ribosomal protein P1	IPR001813 (Ribosomal protein L10/L12)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006414 (translational elongation)
Niben101Scf00416g07004.1	sp|Q5Z6B6|NAC76_ORYSJ	***-	NAC domain-containing protein 76	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01394g03007.1	sp|P81393|MYB08_ANTMA	*-*-	Myb-related protein 308	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02380g01008.1	sp|F4IH21|TBL33_ARATH	***-	Protein trichome birefringence-like 33	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf00321g01010.1	sp|Q9BWG6|SCNM1_HUMAN	***-	Sodium channel modifier 1		
Niben101Scf01212g00012.1			Unknown protein		
Niben101Scf06162g01008.1			Unknown protein		
Niben101Scf08176g00023.1	AT2G07360.2	***-	SH3 domain-containing protein LENGTH=1198	IPR001452 (SH3 domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf01177g06006.1	AT2G21990.1	***-	Protein of unknown function, DUF617 LENGTH=252	IPR006460 (Protein of unknown function DUF617, plant)	
Niben101Ctg09915g00003.1	AT1G34360.1	*-*-	translation initiation factor 3 (IF-3) family protein LENGTH=520		
Niben101Scf02814g03007.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01284g01002.1	sp|P83326|PMEI_ACTDE	--**	Pectinesterase inhibitor	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf03385g06005.1	AT2G15000.4	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=101		
Niben101Scf01958g05002.1	sp|P19595|UGPA_SOLTU	****	UTP--glucose-1-phosphate uridylyltransferase	IPR002618 (UTP--glucose-1-phosphate uridylyltransferase family), IPR029044 (Nucleotide-diphospho-sugar transferases)	GO:0003983 (UTP:glucose-1-phosphate uridylyltransferase activity), GO:0006011 (UDP-glucose metabolic process), GO:0008152 (metabolic process), GO:0070569 (uridylyltransferase activity)
Niben101Scf05188g01018.1	sp|Q9CZV8|FXL20_MOUSE	*-*-	F-box/LRR-repeat protein 20	IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	
Niben101Scf00905g14012.1	sp|Q9SI78|PPR93_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf05874g00003.1	dbj|BAA97097.1|	*-*-	En/Spm transposon protein-like [Arabidopsis thaliana]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf08675g00008.1	sp|Q10NT7|HRD3_ORYSJ	*-*-	ERAD-associated E3 ubiquitin-protein ligase component HRD3		
Niben101Scf00234g02026.1	AT1G71070.1	****	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein LENGTH=395	IPR003406 (Glycosyl transferase, family 14)	GO:0008375 (acetylglucosaminyltransferase activity), GO:0016020 (membrane)
Niben101Scf00751g02014.1	sp|O95562|SFT2B_HUMAN	****	Vesicle transport protein SFT2B	IPR007305 (Vesicle transport protein, Got1/SFT2-like)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf00337g00001.1	ref|XP_007045745.1|	*-*-	O-fuc [Theobroma cacao]		
Niben101Scf05017g07013.1	ref|XP_002526852.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35483.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06094g06005.1	sp|Q9LJ45|CCU11_ARATH	****	Cyclin-U1-1	IPR013763 (Cyclin-like), IPR013922 (Cyclin PHO80-like)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0019901 (protein kinase binding)
Niben101Scf00155g04010.1	sp|Q9H9V4|RN122_HUMAN	*-*-	RING finger protein 122	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02077g01001.1	ref|XP_007035010.1|	*-*-	CwfJ-like family protein, putative isoform 2 [Theobroma cacao] gb|EOY05936.1| CwfJ-like family protein, putative isoform 2 [Theobroma cacao]		
Niben101Scf01394g01024.1	gb|AAW28576.2|	*-*-	Gag-pol polyprotein, putative [Solanum demissum]		
Niben101Scf02662g00001.1	sp|P93820|Y1439_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf06305g04016.1	sp|Q9SUQ8|DIR6_ARATH	***-	Dirigent protein 6	IPR004265 (Plant disease resistance response protein)	
Niben101Scf03266g02004.1			Unknown protein		
Niben101Scf33617g00002.1	sp|Q3YT21|ATPA_EHRCJ	*-**	ATP synthase subunit alpha	IPR000194 (ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf01477g03005.1			Unknown protein		
Niben101Scf02267g00016.1	AT3G26560.1	*-**	ATP-dependent RNA helicase, putative LENGTH=1168	IPR001650 (Helicase, C-terminal), IPR007502 (Helicase-associated domain), IPR011709 (Domain of unknown function DUF1605), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0004386 (helicase activity), GO:0005524 (ATP binding), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf05336g00011.1	sp|O45379|ARL3_CAEEL	***-	ADP-ribosylation factor-like protein 3	IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction)
Niben101Ctg08464g00003.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00536g05021.1	AT5G48850.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=306	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf10344g01005.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf00428g12017.1	ref|XP_002531781.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF30595.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf10846g00020.1	AT1G65800.1	*-*-	receptor kinase 2 LENGTH=847	IPR011009 (Protein kinase-like domain), IPR013227 (PAN-2 domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12841g03019.1	sp|O04379|AGO1_ARATH	*-*-	Protein argonaute 1	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf09082g00018.1			Unknown protein		
Niben101Scf17597g01001.1	AT2G37740.1	*-*-	zinc-finger protein 10 LENGTH=304	IPR015880 (Zinc finger, C2H2-like)	GO:0046872 (metal ion binding)
Niben101Scf05480g01003.1	AT1G28340.1	*-*-	receptor like protein 4 LENGTH=626		
Niben101Scf00864g00004.1	sp|Q22053|FBRL_CAEEL	****	rRNA 2'-O-methyltransferase fibrillarin	IPR000692 (Fibrillarin), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0006364 (rRNA processing), GO:0008033 (tRNA processing), GO:0008168 (methyltransferase activity)
Niben101Scf23557g00021.1	sp|Q8LDF9|HMGB7_ARATH	*-*-	High mobility group B protein 7	IPR009071 (High mobility group box domain)	
Niben101Scf01690g00007.1	sp|Q5PP37|ATXR2_ARATH	*-*-	Histone-lysine N-methyltransferase ATXR2		
Niben101Scf06957g00011.1	sp|Q3EBI7|FB130_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf08653g07016.1	sp|O35075|DSCR3_MOUSE	***-	Down syndrome critical region protein 3 homolog	IPR028934 (Vacuolar protein sorting protein 26 related)	
Niben101Scf11795g00014.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00439g07001.1	AT1G03920.1	****	Protein kinase family protein LENGTH=569	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11773g02003.1			Unknown protein		
Niben101Scf01834g01022.1	ref|XP_003614078.1|	--*-	HGWP repeat containing protein-like protein [Medicago truncatula]		
Niben101Scf03432g01011.1	gb|AIT42219.1|	-**-	metallocarboxypeptidase inhibitor [Solanum tuberosum]		
Niben101Scf03548g02029.1	AT5G50970.1	***-	transducin family protein / WD-40 repeat family protein LENGTH=512	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf01750g14026.1	sp|Q3U2S4|OTUD5_MOUSE	*-*-	OTU domain-containing protein 5	IPR003323 (Ovarian tumour, otubain), IPR009060 (UBA-like)	GO:0005515 (protein binding)
Niben101Scf01494g00008.1	sp|Q9M817|PTR6_ARATH	*-*-	Protein NRT1/ PTR FAMILY 1.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf03747g01012.1	emb|CDX81322.1|	***-	BnaC09g07330D [Brassica napus]		
Niben101Scf05324g04001.1	sp|Q5ZM74|RN141_CHICK	--*-	RING finger protein 141	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04727g07007.1	sp|A5U4P5|LIPB_MYCTA	****	Octanoyltransferase	IPR000544 (Octanoyltransferase)	GO:0005737 (cytoplasm), GO:0006464 (cellular protein modification process), GO:0009107 (lipoate biosynthetic process), GO:0016415 (octanoyltransferase activity)
Niben101Scf01791g02013.1	sp|Q6P7K5|EMC10_XENTR	***-	ER membrane protein complex subunit 10		
Niben101Scf03768g02017.1	AT5G54090.1	*-*-	DNA mismatch repair protein MutS, type 2 LENGTH=796		
Niben101Scf04980g00039.1			Unknown protein		
Niben101Scf03070g06003.1	AT2G07681.1	*-*-	Cytochrome C assembly protein LENGTH=736		
Niben101Scf02739g01002.1	sp|Q94KE2|TIC_ARATH	***-	Protein TIME FOR COFFEE		
Niben101Scf00854g10051.1	sp|P60620|COX1_ARATH	*-**	Cytochrome c oxidase subunit 1	IPR000883 (Cytochrome c oxidase subunit I), IPR023616 (Cytochrome c oxidase, subunit I domain)	GO:0004129 (cytochrome-c oxidase activity), GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009060 (aerobic respiration), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf11325g00003.1	sp|P0CM17|ARF_CRYNB	***-	ADP-ribosylation factor	IPR003579 (Small GTPase superfamily, Rab type), IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf06678g02006.1	sp|Q94BT0|SPSA1_ARATH	****	Sucrose-phosphate synthase 1	IPR012819 (Sucrose phosphate synthase, plant)	GO:0005985 (sucrose metabolic process), GO:0009058 (biosynthetic process), GO:0046524 (sucrose-phosphate synthase activity)
Niben101Scf03093g00002.1	AT1G21390.1	*-*-	embryo defective 2170 LENGTH=248		
Niben101Scf02039g03005.1	AT1G04540.1	*-**	Calcium-dependent lipid-binding (CaLB domain) family protein LENGTH=601	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf09372g00005.1	sp|P40351|ALG8_YEAST	*-*-	Dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase	IPR004856 (Glycosyl transferase, ALG6/ALG8)	GO:0005789 (endoplasmic reticulum membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf04742g03021.1	sp|Q9M2Y4|PP276_ARATH	--*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03737g02007.1	sp|Q9LW00|MBD11_ARATH	*-**	Methyl-CpG-binding domain-containing protein 11	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf15817g00006.1	sp|Q3AC77|NUOA_CARHZ	-***	NADH-quinone oxidoreductase subunit A	IPR000440 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02949g03010.1	sp|Q14498|RBM39_HUMAN	*-**	RNA-binding protein 39	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01374g15015.1	sp|Q55C58|VPS16_DICDI	*-*-	Vacuolar protein sorting-associated protein 16 homolog	IPR016534 (Vacuolar protein sorting-associated protein 16)	GO:0005737 (cytoplasm), GO:0006886 (intracellular protein transport)
Niben101Scf08603g02009.1	sp|Q9FHS6|FK119_ARATH	*-*-	F-box/kelch-repeat protein		
Niben101Scf01313g06026.1	sp|Q9LX46|FBL68_ARATH	*-*-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01964g09001.1	sp|Q5RFB3|PEPD_PONAB	***-	Xaa-Pro dipeptidase	IPR000994 (Peptidase M24, structural domain), IPR029149 (Creatinase/Aminopeptidase P/Spt16, N-terminal)	GO:0004177 (aminopeptidase activity), GO:0030145 (manganese ion binding)
Niben101Scf08755g01011.1	AT2G45680.1	*-*-	TCP family transcription factor LENGTH=356	IPR005333 (Transcription factor, TCP)	
Niben101Scf07255g01012.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00911g04001.1	sp|O01757|NAT10_CAEEL	*-**	N-acetyltransferase 10 homolog	IPR000182 (GNAT domain)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf00739g04033.1	sp|Q9CZB9|TM128_MOUSE	-**-	Transmembrane protein 128		
Niben101Scf02693g00001.1	sp|O45379|ARL3_CAEEL	*-*-	ADP-ribosylation factor-like protein 3	IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR025322 (Protein of unknown function DUF4228, plant), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf03403g03004.1	ref|XP_003602909.1|	*-**	MscS family inner membrane protein ynaI [Medicago truncatula] gb|AES73160.1| mechanosensitive ion channel-like protein [Medicago truncatula]	IPR006685 (Mechanosensitive ion channel MscS), IPR010920 (Like-Sm (LSM) domain)	GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf08160g05007.1	ref|XP_002510381.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF52568.1| conserved hypothetical protein [Ricinus communis]	IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Scf08441g00011.1	sp|Q5REM8|TM205_PONAB	*-*-	Transmembrane protein 205	IPR025423 (Domain of unknown function DUF4149)	
Niben101Scf08643g03018.1	dbj|BAD99417.1|	*-**	acyl-transferase [Capsicum annuum]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00043g01001.1	sp|Q9M565|TAF11_ARATH	****	Transcription initiation factor TFIID subunit 11	IPR006809 (TAFII28-like protein)	GO:0005634 (nucleus), GO:0006367 (transcription initiation from RNA polymerase II promoter), GO:0046982 (protein heterodimerization activity)
Niben101Scf04763g00009.1	AT1G11960.1	***-	ERD (early-responsive to dehydration stress) family protein LENGTH=771	IPR003864 (Domain of unknown function DUF221)	GO:0016020 (membrane)
Niben101Ctg13220g00002.1	sp|Q7X6A5|PPR81_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf27913g00003.1	sp|Q2MIA8|RPOB_SOLLC	*-*-	DNA-directed RNA polymerase subunit beta		
Niben101Scf01063g11017.1	AT3G49590.3	***-	Autophagy-related protein 13 LENGTH=618	IPR018731 (Autophagy-related protein 13)	
Niben101Scf06853g00003.1	sp|Q4UN66|RL9_RICFE	-**-	50S ribosomal protein L9	IPR000244 (Ribosomal protein L9)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf02740g15001.1	sp|Q42881|1A13_SOLLC	***-	1-aminocyclopropane-1-carboxylate synthase 3	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03779g07007.1	sp|Q9C912|R35A3_ARATH	***-	60S ribosomal protein L35a-3	IPR001780 (Ribosomal protein L35A), IPR009000 (Translation protein, beta-barrel domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf06164g00001.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3		
Niben101Scf07050g00006.1	AT3G09640.1	****	ascorbate peroxidase 2 LENGTH=251	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08203g00019.1	AT1G22180.2	***-	Sec14p-like phosphatidylinositol transfer family protein LENGTH=314	IPR001071 (Cellular retinaldehyde binding/alpha-tocopherol transport), IPR011074 (CRAL/TRIO, N-terminal domain)	GO:0005215 (transporter activity), GO:0005622 (intracellular), GO:0006810 (transport)
Niben101Scf04419g01003.1	sp|Q9M2Z5|FBL53_ARATH	***-	F-box/LRR-repeat protein		
Niben101Scf03929g06002.1	ref|XP_002522703.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF39665.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00062g01026.1	sp|Q802W2|A9A1B_DANRE	****	Aldehyde dehydrogenase family 9 member A1-B	IPR010061 (Methylmalonate-semialdehyde dehydrogenase), IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0004491 (methylmalonate-semialdehyde dehydrogenase (acylating) activity), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor), GO:0055114 (oxidation-reduction process)
Niben101Scf02502g03005.1	sp|Q553S1|ZN593_DICDI	***-	Zinc finger protein 593 homolog	IPR022755 (Zinc finger, double-stranded RNA binding)	
Niben101Scf03056g01011.1			Unknown protein		
Niben101Scf02929g06028.1			Unknown protein		
Niben101Scf12382g00021.1	sp|P27495|CB24_TOBAC	***-	Chlorophyll a-b binding protein 40, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf07035g08003.1	sp|Q682V0|XRCC4_ARATH	****	DNA repair protein XRCC4	IPR010585 (DNA repair protein XRCC4)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006302 (double-strand break repair), GO:0006310 (DNA recombination)
Niben101Scf03226g04014.1	sp|P35133|UBC10_ARATH	--*-	Ubiquitin-conjugating enzyme E2 10		
Niben101Scf01478g05007.1	AT3G48730.1	****	glutamate-1-semialdehyde 2,1-aminomutase 2 LENGTH=472	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding), GO:0033014 (tetrapyrrole biosynthetic process), GO:0042286 (glutamate-1-semialdehyde 2,1-aminomutase activity)
Niben101Scf00321g04012.1	ref|XP_003607265.1|	***-	Fasciclin-like arabinogalactan protein [Medicago truncatula]	IPR000782 (FAS1 domain)	
Niben101Scf00395g00002.1	sp|O80919|TBL34_ARATH	***-	Protein trichome birefringence-like 34	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf01634g07028.1	sp|Q66HC5|NUP93_RAT	****	Nuclear pore complex protein Nup93	IPR007231 (Nucleoporin interacting component Nup93/Nic96)	GO:0005643 (nuclear pore), GO:0006810 (transport)
Niben101Scf09924g00001.1	gb|KEH28697.1|	*-*-	lactoylglutathione lyase/glyoxalase I family protein [Medicago truncatula]	IPR029068 (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase)	
Niben101Scf00398g00014.1	sp|Q6G398|NUOK_BARHE	*-**	NADH-quinone oxidoreductase subunit K	IPR001133 (NADH-ubiquinone oxidoreductase chain 4L/K)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf00153g00020.1	sp|P19484|TFEB_HUMAN	--*-	Transcription factor EB	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf00687g08006.1	sp|Q9LZP9|CP122_ARATH	***-	Calvin cycle protein CP12-2, chloroplastic	IPR003823 (Domain of unknown function CP12)	
Niben101Scf04400g02005.1	AT2G03450.1	****	purple acid phosphatase 9 LENGTH=651	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf01538g00023.1	sp|Q944N1|LHP1_SOLLC	***-	Chromo domain protein LHP1	IPR016197 (Chromo domain-like)	GO:0005634 (nucleus)
Niben101Scf15958g00001.1	ref|XP_003604000.1|	--*-	S-norcoclaurine synthase [Medicago truncatula] gb|AES74251.1| 2OG-Fe(II) oxygenase family oxidoreductase [Medicago truncatula]		
Niben101Scf12568g00007.1	AT1G64030.1	***-	serpin 3 LENGTH=385	IPR000215 (Serpin family), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf05063g00008.1			Unknown protein		
Niben101Scf01192g07003.1	sp|Q6TDP4|KLH17_HUMAN	*-*-	Kelch-like protein 17	IPR015915 (Kelch-type beta propeller)	GO:0005515 (protein binding)
Niben101Scf00837g06003.1	sp|Q84WL9|AP2S_ARATH	*-**	AP-2 complex subunit sigma	IPR016635 (Adaptor protein complex, sigma subunit)	GO:0006810 (transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0030122 (AP-2 adaptor complex)
Niben101Scf04671g01010.1			Unknown protein		
Niben101Scf23901g00005.1	AT5G64220.1	****	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains LENGTH=1050	IPR000048 (IQ motif, EF-hand binding site), IPR013783 (Immunoglobulin-like fold), IPR014756 (Immunoglobulin E-set), IPR020683 (Ankyrin repeat-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf07370g02016.1	AT5G17700.1	***-	MATE efflux family protein LENGTH=497		
Niben101Scf02249g03001.1	emb|CDY49928.1|	*-*-	BnaCnng18380D [Brassica napus]		
Niben101Scf05301g05002.1	gb|KEH43280.1|	***-	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf08515g00023.1	sp|Q9SJF3|DCP1_ARATH	*-*-	mRNA-decapping enzyme-like protein	IPR010334 (Dcp1-like decapping), IPR011993 (Pleckstrin homology-like domain)	
Niben101Scf01350g03011.1			Unknown protein		
Niben101Scf09883g01009.1	sp|P29057|HMDH1_HEVBR	****	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	IPR002202 (Hydroxymethylglutaryl-CoA reductase, class I/II), IPR023074 (Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain), IPR023282 (Hydroxymethylglutaryl-CoA reductase, N-terminal)	GO:0004420 (hydroxymethylglutaryl-CoA reductase (NADPH) activity), GO:0008299 (isoprenoid biosynthetic process), GO:0015936 (coenzyme A metabolic process), GO:0016021 (integral component of membrane), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050661 (NADP binding), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03295g02001.1			Unknown protein		
Niben101Scf02467g01010.1	ref|XP_007013557.1|	*-*-	SPOC domain / Transcription elongation factor S-II protein, putative isoform 1 [Theobroma cacao] gb|EOY31176.1| SPOC domain / Transcription elongation factor S-II protein, putative isoform 1 [Theobroma cacao]		
Niben101Scf08130g00014.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf09871g00009.1	AT1G09420.2	****	glucose-6-phosphate dehydrogenase 4 LENGTH=635	IPR001282 (Glucose-6-phosphate dehydrogenase)	GO:0004345 (glucose-6-phosphate dehydrogenase activity), GO:0006006 (glucose metabolic process), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf07896g01005.1			Unknown protein		
Niben101Scf12987g00001.1	AT5G07020.1	***-	proline-rich family protein LENGTH=235		
Niben101Scf07580g02001.1	sp|Q9LVM1|AB25B_ARATH	*-*-	ABC transporter B family member 25, mitochondrial	IPR011527 (ABC transporter type 1, transmembrane domain)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf06004g00019.1	sp|Q0WKZ3|PP105_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03203g09008.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01682g01007.1	sp|Q944S9|MAD16_ORYSJ	****	MADS-box transcription factor 16	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf12373g01003.1	AT3G58690.1	****	Protein kinase superfamily protein LENGTH=400	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05797g01011.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf01301g03020.1	AT3G48800.1	***-	Sterile alpha motif (SAM) domain-containing protein LENGTH=278	IPR013761 (Sterile alpha motif/pointed domain)	GO:0005515 (protein binding)
Niben101Scf01289g00006.1	gb|AES94704.2|	*-*-	arginine/serine-rich splicing factor [Medicago truncatula]		
Niben101Scf04196g00024.1	ref|XP_002521225.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF41177.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf06639g00005.1	sp|Q86MW9|SINA_SCHMA	****	E3 ubiquitin-protein ligase sina	IPR004162 (E3 ubiquitin-protein ligase SINA like), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0007275 (multicellular organismal development), GO:0008270 (zinc ion binding), GO:0016567 (protein ubiquitination)
Niben101Scf01784g00010.1	sp|Q969Q5|RAB24_HUMAN	*-*-	Ras-related protein Rab-24	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Ctg09867g00003.1	sp|F4JIF5|TCX2_ARATH	*-*-	Protein tesmin/TSO1-like CXC 2	IPR005172 (CRC domain), IPR028307 (Lin-54 family)	
Niben101Scf05055g01004.1	sp|Q651X6|CSLE6_ORYSJ	*-**	Cellulose synthase-like protein E6	IPR005150 (Cellulose synthase)	GO:0016020 (membrane), GO:0016760 (cellulose synthase (UDP-forming) activity), GO:0030244 (cellulose biosynthetic process)
Niben101Scf03434g01014.1	sp|Q0WPE9|NAT7_ARATH	****	Nucleobase-ascorbate transporter 7	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf23305g01017.1	gb|AAU90303.2|	*-*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf06876g01043.1	AT5G28040.1	***-	DNA-binding storekeeper protein-related transcriptional regulator LENGTH=427	IPR007592 (Protein of unknown function DUF573)	
Niben101Scf05821g00008.1	sp|P93332|NOD3_MEDTR	***-	Bidirectional sugar transporter N3	IPR018179 (SWEET sugar transporter, plants)	GO:0016021 (integral component of membrane)
Niben101Scf01517g08042.1	sp|Q9C810|Y1342_ARATH	***-	PHD finger protein	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01847g01012.1	sp|Q9T0I8|MTN1_ARATH	***-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1	IPR018017 (Nucleoside phosphorylase)	GO:0003824 (catalytic activity), GO:0009116 (nucleoside metabolic process)
Niben101Scf08606g00007.1	sp|B5YAR4|DNAJ_DICT6	--*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf06671g03025.1	sp|P0C8Y8|2SS2_BEREX	--*-	2S sulfur-rich seed storage protein 2	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf00761g07019.1	emb|CDY53973.1|	***-	BnaA10g30050D [Brassica napus]		
Niben101Scf00717g00008.1	emb|CAJ32468.1|	--*-	RNA-dependent RNA polymerase [Ophiostoma mitovirus 3b]	IPR008686 (RNA-dependent RNA polymerase, mitoviral)	
Niben101Scf12154g00001.1	sp|Q9D7H2|WDR5B_MOUSE	*-*-	WD repeat-containing protein 5B	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf11444g00003.1	sp|P72689|IF2_SYNY3	*-*-	Translation initiation factor IF-2	IPR000795 (Elongation factor, GTP-binding domain), IPR004161 (Translation elongation factor EFTu/EF1A, domain 2), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf09847g00013.1	sp|P17069|ACEA_GOSHI	****	Isocitrate lyase	IPR006254 (Isocitrate lyase)	GO:0003824 (catalytic activity), GO:0004451 (isocitrate lyase activity), GO:0008152 (metabolic process), GO:0019752 (carboxylic acid metabolic process)
Niben101Scf06613g00010.1	sp|P22242|DRPE_CRAPL	***-	Desiccation-related protein PCC13-62		
Niben101Scf10342g01012.1	sp|Q84J95|GASA5_ARATH	***-	Gibberellin-regulated protein 5	IPR003854 (Gibberellin regulated protein)	
Niben101Scf09638g00009.1	AT4G19120.1	***-	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein LENGTH=600	IPR004159 (Putative S-adenosyl-L-methionine-dependent methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0008168 (methyltransferase activity)
Niben101Scf02825g00007.1	AT4G09650.1	****	ATP synthase delta-subunit gene LENGTH=234	IPR000711 (ATPase, OSCP/delta subunit), IPR026015 (F1F0 ATP synthase OSCP/delta subunit, N-terminal domain)	GO:0015986 (ATP synthesis coupled proton transport), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Scf01553g02020.1	sp|O59952|LIP_THELA	--*-	Lipase	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf07466g01005.1	sp|Q9STF0|LRKS3_ARATH	*-**	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09170g02001.1	AT4G26100.1	****	casein kinase 1 LENGTH=450	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00781g06019.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf16254g00008.1	sp|Q9SSV4|INO1_NICPA	****	Inositol-3-phosphate synthase	IPR002587 (Myo-inositol-1-phosphate synthase)	GO:0004512 (inositol-3-phosphate synthase activity), GO:0006021 (inositol biosynthetic process), GO:0008654 (phospholipid biosynthetic process)
Niben101Scf00702g00021.1			Unknown protein		
Niben101Scf01990g00010.1	sp|P42776|GBF3_ARATH	****	G-box-binding factor 3	IPR004827 (Basic-leucine zipper domain), IPR012900 (G-box binding, MFMR)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf07509g01011.1	ref|XP_002522268.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF40126.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02235g04015.1	tpg|DAA52051.1|	***-	TPA: hypothetical protein ZEAMMB73_362192 [Zea mays]	IPR012438 (Protein of unknown function DUF1639)	
Niben101Scf03712g01001.1	sp|Q42677|TKT7_CRAPL	--*-	Transketolase 7		
Niben101Scf04337g01001.1	AT1G77210.1	****	sugar transporter 14 LENGTH=504	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04776g01009.1	AT2G48120.1	***-	pale cress protein (PAC) LENGTH=313		
Niben101Scf02153g01004.1	sp|O22193|PUB4_ARATH	*-*-	U-box domain-containing protein 4	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02272g04023.1	gb|ABD78324.1|	***-	SLL1 protein [Primula vulgaris]		
Niben101Scf00501g03004.1	sp|Q9LW68|LSH4_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4	IPR006936 (ALOG domain)	
Niben101Scf03599g00004.1	sp|Q5PP62|SPX3_ARATH	***-	SPX domain-containing protein 3	IPR004331 (SPX, N-terminal)	
Niben101Scf06537g00005.1	sp|Q8L706|SYT5_ARATH	*-*-	Synaptotagmin-5	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf03923g14009.1	sp|Q84KJ6|AMT31_ORYSJ	****	Ammonium transporter 3 member 1	IPR001905 (Ammonium transporter), IPR002229 (Blood group Rhesus C/E/D polypeptide), IPR029020 (Ammonium/urea transporter)	GO:0008519 (ammonium transmembrane transporter activity), GO:0015696 (ammonium transport), GO:0016020 (membrane), GO:0072488 (ammonium transmembrane transport)
Niben101Scf00912g04001.1	sp|Q9LVQ5|PP432_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain), IPR012677 (Nucleotide-binding alpha-beta plait domain), IPR029035 (DHS-like NAD/FAD-binding domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf02085g13010.1	sp|Q9FJD5|LAC17_ARATH	***-	Laccase-17	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf21026g00011.1	emb|CDY48281.1|	***-	BnaA05g10730D [Brassica napus]		
Niben101Scf08445g02048.1	AT4G39470.1	***-	Tetratricopeptide repeat (TPR)-like superfamily protein LENGTH=341	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01983g09009.1	sp|O50055|COL1_ARATH	*-**	Zinc finger protein CONSTANS-LIKE 1	IPR000315 (Zinc finger, B-box)	GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf16236g00012.1	emb|CDY49381.1|	***-	BnaA03g50700D [Brassica napus]	IPR024738 (Transcriptional coactivator Hfi1/Transcriptional adapter 1)	GO:0070461 (SAGA-type complex)
Niben101Scf01576g02007.1	AT4G02050.1	****	sugar transporter protein 7 LENGTH=513	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf05548g02005.1	sp|Q2HBE7|DED1_CHAGB	*-**	ATP-dependent RNA helicase DED1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf01563g00012.1	sp|P81392|MYB06_ANTMA	*-*-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05883g00012.1	sp|Q6ZLK0|OST48_ORYSJ	****	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	IPR005013 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1)	GO:0004579 (dolichyl-diphosphooligosaccharide-protein glycotransferase activity), GO:0005789 (endoplasmic reticulum membrane), GO:0018279 (protein N-linked glycosylation via asparagine)
Niben101Scf04016g00009.1	sp|Q40901|DEF_PETIN	***-	Defensin-like protein	IPR008176 (Gamma thionin)	GO:0006952 (defense response)
Niben101Scf25768g00021.1	gb|AAT74390.1|	***-	rapid alkalinization factor 5 [Solanum chacoense]		
Niben101Scf00435g03010.1			Unknown protein		
Niben101Scf03778g01026.1	AT4G36380.1	***-	Cytochrome P450 superfamily protein LENGTH=524	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09658g00026.1	AT1G08630.1	***-	threonine aldolase 1 LENGTH=358	IPR015424 (Pyridoxal phosphate-dependent transferase), IPR023603 (Threonine aldolase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0016829 (lyase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01066g04002.1	AT5G48960.1	***-	HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase LENGTH=642	IPR008380 (HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase), IPR023214 (HAD-like domain)	
Niben101Scf06397g03002.1	sp|Q9H9V4|RN122_HUMAN	*-*-	RING finger protein 122	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf12858g01022.1			Unknown protein		
Niben101Scf04669g02011.1	emb|CDY24730.1|	*-*-	BnaC04g13350D [Brassica napus]		
Niben101Scf05025g05005.1	emb|CCQ38117.1|	***-	Ran-binding protein, partial [Schiedea kauaiensis]		
Niben101Scf02944g01014.1	sp|Q9VUN3|RANL_DROME	****	GTP-binding nuclear protein Ran-like	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf02110g00013.1	sp|P50134|DCOR_DATST	*-*-	Ornithine decarboxylase	IPR000183 (Ornithine/DAP/Arg decarboxylase), IPR029066 (PLP-binding barrel)	GO:0003824 (catalytic activity), GO:0006596 (polyamine biosynthetic process)
Niben101Scf10476g04002.1	emb|CDX74671.1|	***-	BnaA05g04170D [Brassica napus]		
Niben101Scf07895g01006.1			Unknown protein		
Niben101Scf02864g05007.1	AT5G66310.1	*-**	ATP binding microtubule motor family protein LENGTH=1063	IPR001752 (Kinesin motor domain), IPR021881 (Protein of unknown function DUF3490), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf01578g00012.1	gb|KEH28241.1|	*-*-	GASA/GAST/Snakin [Medicago truncatula]		
Niben101Scf02537g13011.1	sp|Q9LME6|MBD8_ARATH	*-**	Methyl-CpG-binding domain-containing protein 8	IPR015880 (Zinc finger, C2H2-like), IPR016177 (DNA-binding domain), IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046872 (metal ion binding)
Niben101Scf04899g03015.1	AT4G04970.1	*-**	glucan synthase-like 1 LENGTH=1768	IPR003440 (Glycosyl transferase, family 48)	GO:0000148 (1,3-beta-D-glucan synthase complex), GO:0003843 (1,3-beta-D-glucan synthase activity), GO:0006075 ((1->3)-beta-D-glucan biosynthetic process), GO:0016020 (membrane)
Niben101Scf01655g03006.1	sp|O80837|REMO_ARATH	***-	Remorin	IPR005516 (Remorin, C-terminal)	
Niben101Scf24096g00019.1	dbj|BAM48921.1|	--*-	kinesin-like protein for chloroplast movement 2 [Physcomitrella patens]		
Niben101Scf03277g01003.1	AT2G37460.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=380	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf00167g01003.1	AT5G08391.1	***-	Protein of unknown function (DUF 3339) LENGTH=69	IPR021775 (Protein of unknown function DUF3339)	
Niben101Scf00340g03001.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04082g02016.1	sp|P23901|ALDR_HORVU	****	Aldose reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00663g05009.1	gb|AID55044.1|	*-*-	disease resistance protein, partial [Solanum habrochaites]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf08604g00003.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00216g00016.1	AT2G37860.3	***-	Protein of unknown function (DUF3411) LENGTH=432	IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf08333g06002.1	sp|P72173|AAT_PSEAE	--*-	Aspartate aminotransferase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01694g01003.1	sp|A9WFT9|PDXS_CHLAA	****	Pyridoxal biosynthesis lyase PdxS	IPR001852 (Pyridoxine biosynthesis protein), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0042823 (pyridoxal phosphate biosynthetic process)
Niben101Scf07497g01004.1	sp|Q2V465|SCP11_ARATH	*-**	Serine carboxypeptidase-like 11	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01579g01029.1			Unknown protein		
Niben101Ctg15862g00003.1	AT5G24580.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=319	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf08716g00005.1	sp|O24160|TGA21_TOBAC	****	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR004827 (Basic-leucine zipper domain), IPR025422 (Transcription factor TGA like domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf25598g00001.1	AT3G24740.1	***-	Protein of unknown function (DUF1644) LENGTH=354	IPR012866 (Protein of unknown function DUF1644), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf02459g04008.1	sp|Q9FZ03|MAN2_SOLLC	***-	Mannan endo-1,4-beta-mannosidase 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03224g05006.1	AT4G31860.1	*-*-	Protein phosphatase 2C family protein LENGTH=357	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf06556g05001.1			Unknown protein		
Niben101Scf05883g01007.1			Unknown protein		
Niben101Scf02221g01001.1	sp|A0JMY5|NFXL1_XENLA	****	NF-X1-type zinc finger protein NFXL1	IPR000967 (Zinc finger, NF-X1-type), IPR019786 (Zinc finger, PHD-type, conserved site)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf01943g07001.1			Unknown protein		
Niben101Scf01550g01001.1	sp|Q9SSB5|PRS7A_ARATH	*-*-	26S protease regulatory subunit 7 homolog A	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf15496g02014.1	sp|Q8W4H1|GAT26_ARATH	****	GATA transcription factor 26	IPR013088 (Zinc finger, NHR/GATA-type), IPR028020 (ASX homology domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf04713g03003.1	AT4G17900.1	***-	PLATZ transcription factor family protein LENGTH=227	IPR006734 (Protein of unknown function DUF597)	
Niben101Scf11347g00005.1	sp|Q3YS40|NUOH_EHRCJ	--*-	NADH-quinone oxidoreductase subunit H	IPR001694 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H)	GO:0016020 (membrane), GO:0055114 (oxidation-reduction process)
Niben101Scf01631g00010.1	sp|Q9FGF0|PGML1_ARATH	*-*-	Phosphoglycerate mutase-like protein 1		
Niben101Scf19623g00018.1	sp|Q15650|TRIP4_HUMAN	*-*-	Activating signal cointegrator 1	IPR009349 (Zinc finger, C2HC5-type)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding)
Niben101Scf03307g06003.1	sp|O82200|MIOX2_ARATH	****	Inositol oxygenase 2	IPR007828 (Inositol oxygenase)	GO:0005506 (iron ion binding), GO:0005737 (cytoplasm), GO:0019310 (inositol catabolic process), GO:0050113 (inositol oxygenase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05988g07003.1	AT4G21750.1	****	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein LENGTH=762	IPR002913 (START domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0008289 (lipid binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00180g07007.1	emb|CDY03785.1|	*-*-	BnaC01g29020D [Brassica napus]		
Niben101Scf03528g01010.1	AT2G26180.1	***-	IQ-domain 6 LENGTH=416	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf09604g01004.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02240g01009.1	AT4G21720.1	*-*-	unknown protein; Has 2692 Blast hits to 975 proteins in 186 species: Archae - 4; Bacteria - 460; Metazoa - 658; Fungi - 93; Plants - 1089; Viruses - 100; Other Eukaryotes - 288 (source: NCBI BLink). LENGTH=139		
Niben101Scf03143g11003.1	AT1G67850.1	***-	Protein of unknown function (DUF707) LENGTH=404	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf11254g00007.1	ref|WP_023620087.1|	***-	membrane protein [Enterobacter cloacae]	IPR005226 (UPF0014 family)	
Niben101Scf04457g03005.1	AT3G18490.1	***-	Eukaryotic aspartyl protease family protein LENGTH=500	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf08473g00002.1	AT4G37790.1	***-	Homeobox-leucine zipper protein family LENGTH=278	IPR003106 (Leucine zipper, homeobox-associated), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00290g00010.1	sp|Q9BTD8|RBM42_HUMAN	--**	RNA-binding protein 42	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf00799g05011.1	AT4G01870.1	***-	tolB protein-related LENGTH=652	IPR011042 (Six-bladed beta-propeller, TolB-like)	
Niben101Scf00854g06035.1			Unknown protein		
Niben101Scf00944g04003.1	sp|Q84TE6|NAC22_ARATH	*-*-	NAC domain-containing protein 21/22	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf00854g05033.1	sp|B1YTQ4|NUOD_BURA4	*-**	NADH-quinone oxidoreductase subunit D	IPR029014 (NiFe hydrogenase-like)	GO:0016651 (oxidoreductase activity, acting on NAD(P)H), GO:0048038 (quinone binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01695g01017.1	sp|P34164|SIP2_YEAST	***-	SNF1 protein kinase subunit beta-2	IPR006828 (Association with the SNF1 complex (ASC) domain), IPR014756 (Immunoglobulin E-set), IPR030070 (SNF1-related protein kinase regulatory subunit beta-2)	GO:0005515 (protein binding)
Niben101Scf03926g00001.1	sp|Q93VH2|BBD2_ARATH	****	Bifunctional nuclease 2	IPR003729 (Bifunctional nuclease domain)	GO:0004518 (nuclease activity)
Niben101Scf00339g07001.1	AT5G62540.1	***-	ubiquitin-conjugating enzyme 3 LENGTH=150	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf03634g00001.1	AT5G17770.1	****	NADH:cytochrome B5 reductase 1 LENGTH=281	IPR001433 (Oxidoreductase FAD/NAD(P)-binding), IPR001834 (NADH:cytochrome b5 reductase (CBR)), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf07278g01016.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf15077g01009.1	sp|Q5AI86|EIF3I_CANAL	***-	Eukaryotic translation initiation factor 3 subunit I	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf08272g00019.1	sp|P46291|RL38_SOLLC	*-*-	60S ribosomal protein L38	IPR002675 (Ribosomal protein L38e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08567g00005.1	sp|A8DQI9|NU4M_AVAUN	*-**	NADH-ubiquinone oxidoreductase chain 4	IPR003918 (NADH:ubiquinone oxidoreductase)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf12159g09011.1	emb|CAC86963.1|	--*-	stachyose synthase [Stachys affinis]		
Niben101Scf01326g08021.1	sp|Q8L4D8|IQD31_ARATH	***-	Protein IQ-DOMAIN 31	IPR000048 (IQ motif, EF-hand binding site), IPR025064 (Domain of unknown function DUF4005)	GO:0005515 (protein binding)
Niben101Scf18637g02010.1	AT5G65630.1	*-*-	global transcription factor group E7 LENGTH=590	IPR027353 (NET domain)	
Niben101Scf09455g01020.1	ref|WP_024237091.1|	***-	membrane protein [Escherichia coli]	IPR005226 (UPF0014 family)	
Niben101Scf08238g00005.1			Unknown protein		
Niben101Scf11154g00022.1	sp|B1ZU31|MURG_OPITP	--**	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	IPR007235 (Glycosyl transferase, family 28, C-terminal)	GO:0005975 (carbohydrate metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups), GO:0030246 (carbohydrate binding), GO:0030259 (lipid glycosylation)
Niben101Scf00291g02054.1			Unknown protein		
Niben101Scf12735g00012.1	sp|Q9SYZ9|TAF8_ARATH	***-	Transcription initiation factor TFIID subunit 8	IPR006565 (Bromodomain transcription factor), IPR009072 (Histone-fold), IPR019473 (Transcription factor TFIID, subunit 8, C-terminal)	GO:0046982 (protein heterodimerization activity)
Niben101Scf06737g00028.1	sp|Q8VZ19|RL302_ARATH	***-	60S ribosomal protein L30-2	IPR000231 (Ribosomal protein L30e), IPR022991 (Ribosomal protein L30e, conserved site), IPR029064 (50S ribosomal protein L30e-like)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00505g03002.1	ref|NP_001154722.1|	--*-	plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana] gb|AED92770.1| plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]		
Niben101Scf05308g00003.1	sp|Q9C652|RBP1_ARATH	--**	RNA-binding protein 1	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf09074g00025.1	ref|NP_001067297.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf03104g00008.1	AT5G03730.2	*-**	Protein kinase superfamily protein LENGTH=821	IPR011009 (Protein kinase-like domain), IPR028324 (Serine/threonine-protein kinase CTR1)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02772g01009.1	sp|Q9M157|ETC3_ARATH	--*-	MYB-like transcription factor ETC3	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf07162g05013.1	sp|P54802|ANAG_HUMAN	***-	Alpha-N-acetylglucosaminidase	IPR007781 (Alpha-N-acetylglucosaminidase), IPR024240 (Alpha-N-acetylglucosaminidase, N-terminal), IPR024732 (Alpha-N-acetylglucosaminidase, C-terminal), IPR024733 (Alpha-N-acetylglucosaminidase, tim-barrel domain)	
Niben101Scf29632g00004.1	AT5G48790.1	***-	Domain of unknown function (DUF1995) LENGTH=316	IPR018962 (Domain of unknown function DUF1995)	
Niben101Scf07391g04030.1	sp|Q9KDV3|GALE_BACHD	****	UDP-glucose 4-epimerase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR005886 (UDP-glucose 4-epimerase GalE), IPR025308 (UDP-glucose 4-epimerase C-terminal domain)	GO:0003824 (catalytic activity), GO:0003978 (UDP-glucose 4-epimerase activity), GO:0006012 (galactose metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf03245g04001.1			Unknown protein		
Niben101Scf00271g09019.1	AT1G71697.1	****	choline kinase 1 LENGTH=346	IPR011009 (Protein kinase-like domain), IPR026712 (Choline/Ethanolamine kinase)	GO:0016301 (kinase activity), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0046474 (glycerophospholipid biosynthetic process)
Niben101Scf08954g01008.1	sp|Q10CQ8|PHYC_ORYSJ	***-	Phytochrome C	IPR001294 (Phytochrome), IPR005467 (Signal transduction histidine kinase, core), IPR029016 (GAF domain-like)	GO:0004871 (signal transducer activity), GO:0005515 (protein binding), GO:0006355 (regulation of transcription, DNA-templated), GO:0007165 (signal transduction), GO:0009584 (detection of visible light), GO:0018298 (protein-chromophore linkage)
Niben101Scf09781g00013.1	ref|XP_002515190.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF47174.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02814g03006.1	sp|P48368|CRTE_CYAPA	***-	Geranylgeranyl diphosphate synthase	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf01025g00006.1	sp|P53800|FDFT_NICBE	***-	Squalene synthase	IPR002060 (Squalene/phytoene synthase)	GO:0009058 (biosynthetic process), GO:0016740 (transferase activity), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf07482g01006.1	emb|CDY66304.1|	*-*-	BnaA07g38840D [Brassica napus]		
Niben101Scf01213g00018.1	sp|Q9R0Z9|RHG07_MOUSE	--*-	Rho GTPase-activating protein 7		
Niben101Scf02376g00008.1	AT1G70670.1	***-	Caleosin-related family protein LENGTH=195	IPR007736 (Caleosin)	
Niben101Scf06901g00011.1	AT3G22950.1	***-	ADP-ribosylation factor C1 LENGTH=183	IPR003579 (Small GTPase superfamily, Rab type), IPR005225 (Small GTP-binding protein domain), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006886 (intracellular protein transport), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport)
Niben101Scf05491g00003.1	ref|NP_001065779.1|	*-*-	product [Oryza sativa Japonica Group]	IPR021410 (The fantastic four family)	
Niben101Scf02133g06002.1			Unknown protein		
Niben101Scf06537g00003.1	sp|Q7SYV0|SYFAB_XENLA	*-*-	Phenylalanine--tRNA ligase alpha subunit B		
Niben101Scf02553g02003.1			Unknown protein		
Niben101Scf03679g01008.1	sp|Q5QA94|ATG18_PICAN	*-*-	Autophagy-related protein 18	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf08937g00012.1	AT1G52770.1	***-	Phototropic-responsive NPH3 family protein LENGTH=454	IPR027356 (NPH3 domain)	
Niben101Scf08680g00003.1	sp|Q9LQ12|4CLL1_ARATH	***-	4-coumarate--CoA ligase-like 1	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01557g05006.1	AT1G08390.1	*-*-	unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=137		
Niben101Scf09343g01019.1	AT4G21270.1	****	kinesin 1 LENGTH=793	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf08322g01014.1			Unknown protein		
Niben101Scf10333g00007.1	gb|ABD65034.1|	--*-	Ulp1 protease family protein [Brassica oleracea]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf06613g04006.1	AT4G08630.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=845		
Niben101Scf00912g05004.1	sp|P35614|ERF1Z_ARATH	****	Eukaryotic peptide chain release factor subunit 1-3	IPR004403 (Peptide chain release factor eRF1/aRF1), IPR029064 (50S ribosomal protein L30e-like)	GO:0005737 (cytoplasm), GO:0006415 (translational termination), GO:0016149 (translation release factor activity, codon specific)
Niben101Scf08643g01002.1	emb|CDY67690.1|	*-*-	BnaUnng02370D [Brassica napus]		
Niben101Scf09065g00002.1	sp|Q9SKQ4|PP167_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02731g06006.1	AT2G35320.1	***-	EYES ABSENT homolog LENGTH=307	IPR006545 (EYA domain), IPR023214 (HAD-like domain), IPR028472 (Eyes absent family)	GO:0004725 (protein tyrosine phosphatase activity), GO:0007275 (multicellular organismal development)
Niben101Scf06249g00007.1	AT3G45400.1	*-*-	exostosin family protein LENGTH=475	IPR004263 (Exostosin-like)	
Niben101Scf00398g03004.1	sp|Q6AW23|MDH_VIBMA	****	Malate dehydrogenase	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf14311g00012.1	sp|Q9FN94|RLK7_ARATH	--*-	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR012438 (Protein of unknown function DUF1639)	GO:0005524 (ATP binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf20224g00004.1	sp|Q9C793|AGO7_ARATH	***-	Protein argonaute 7	IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding)
Niben101Scf07402g05001.1	sp|P13853|HS17C_ARATH	***-	17.6 kDa class I heat shock protein 3	IPR008978 (HSP20-like chaperone)	
Niben101Scf12483g01009.1	sp|Q9SXS8|ERF3_TOBAC	****	Ethylene-responsive transcription factor 3	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf10374g00010.1	AT4G22010.1	*-*-	SKU5 similar 4 LENGTH=541	IPR008972 (Cupredoxin)	
Niben101Scf05178g00002.1	sp|Q9SSQ4|FRS6_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 6	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf07896g01004.1			Unknown protein		
Niben101Scf01596g08004.1	ref|WP_002752389.1|	***-	chorismate mutase [Microcystis aerugin [Microcystis aeruginosa PCC 9432]	IPR010404 (Chromophore lyase CpcT/CpeT)	GO:0017009 (protein-phycocyanobilin linkage)
Niben101Scf04711g00018.1	sp|A1RX33|PUS10_THEPD	*-**	tRNA pseudouridine synthase Pus10	IPR020103 (Pseudouridine synthase, catalytic domain)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf00497g09005.1			Unknown protein		
Niben101Scf00028g01007.1	sp|Q55721|FBT_SYNY3	***-	Folate-biopterin transporter	IPR004324 (Folate-biopterin transporter), IPR020846 (Major facilitator superfamily domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf13831g00008.1	sp|Q9LXE3|PUB28_ARATH	***-	U-box domain-containing protein 28	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf05202g00008.1	AT3G06400.3	*-**	chromatin-remodeling protein 11 LENGTH=1057	IPR009057 (Homeodomain-like), IPR029915 (ISWI family)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006338 (chromatin remodeling), GO:0016589 (NURF complex), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides), GO:0016887 (ATPase activity), GO:0043044 (ATP-dependent chromatin remodeling)
Niben101Scf06407g01001.1	sp|A0JPZ8|AP2L3_ARATH	*-**	AP2-like ethylene-responsive transcription factor	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03076g02019.1	sp|A2C0Q8|CH601_PROM1	***-	60 kDa chaperonin 1	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding), GO:0042026 (protein refolding), GO:0044267 (cellular protein metabolic process)
Niben101Scf00781g06017.1	gb|AGN30743.1|	*-*-	chaperonin-like protein, partial [N , partial [Nostoc sp. 'Gunnera magellanica cyanobiont']	IPR003435 (Chaperonin-like RbcX)	
Niben101Scf00990g02019.1	sp|Q87EV2|TRUB_XYLFT	--*-	tRNA pseudouridine synthase B		
Niben101Scf36509g00003.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04430g03004.1	sp|Q9FWA3|6GPD3_ARATH	*-**	6-phosphogluconate dehydrogenase, decarboxylating 3	IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050661 (NADP binding), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06084g01008.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07322g00013.1	AT5G56960.1	***-	basic helix-loop-helix (bHLH) DNA-binding family protein LENGTH=466	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf06709g02001.1	ref|XP_007010090.1|	***-	UDP-Glyc isoform 1 [Theobroma cacao]	IPR001296 (Glycosyl transferase, family 1)	GO:0009058 (biosynthetic process)
Niben101Scf29981g00002.1	AT3G12620.1	****	Protein phosphatase 2C family protein LENGTH=385	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf00918g04013.1	sp|B2TVQ7|FIEF_SHIB3	--**	Cation-efflux pump FieF	IPR002524 (Cation efflux protein), IPR027469 (Cation efflux protein transmembrane domain), IPR027470 (Cation efflux protein cytoplasmic domain)	GO:0006812 (cation transport), GO:0008324 (cation transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00163g12012.1	gb|ABD64919.1|	***-	Lil3 protein, putative [Brassica oleracea]	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	
Niben101Scf06222g01004.1			Unknown protein		
Niben101Scf05824g07005.1	sp|Q9SK27|ENL1_ARATH	***-	Early nodulin-like protein 1	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf03985g04006.1	AT4G23810.1	*-**	WRKY family transcription factor LENGTH=324	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05566g04007.1	sp|Q9SJZ2|PER17_ARATH	****	Peroxidase 17	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00596g02003.1	AT1G71680.1	***-	Transmembrane amino acid transporter family protein LENGTH=448	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf16089g00014.1	sp|P34885|KPC1B_CAEEL	*-**	Protein kinase C-like 1B	IPR000961 (AGC-kinase, C-terminal), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08704g01003.1	AT5G22580.1	***-	Stress responsive A/B Barrel Domain LENGTH=111	IPR011008 (Dimeric alpha-beta barrel)	
Niben101Scf01653g02023.1	sp|Q8LHA8|CCD22_ORYSJ	***-	Cyclin-D2-2	IPR013763 (Cyclin-like)	GO:0005634 (nucleus)
Niben101Scf00341g04004.1	sp|P87131|CYSK2_SCHPO	****	Cysteine synthase 2	IPR001926 (Tryptophan synthase beta subunit-like PLP-dependent enzyme)	GO:0006535 (cysteine biosynthetic process from serine)
Niben101Scf00180g10005.1	AT1G28310.2	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=325	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02568g00010.1	sp|Q94B46|FBL74_ARATH	--*-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf03052g00004.1	gb|ACZ73650.1|	*-*-	glycine-rich protein precursor [Nicotiana tabacum]	IPR010800 (Glycine rich protein)	
Niben101Scf01658g01018.1	AT2G25737.1	*-*-	Sulfite exporter TauE/SafE family protein LENGTH=476	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf12414g03002.1	ref|XP_007039994.1|	***-	F5O11.10 isoform 3 [Theobroma cacao] gb|EOY24495.1| F5O11.10 isoform 3 [Theobroma cacao]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf00987g06003.1	sp|Q9W4D2|RNP4F_DROME	--**	RNA-binding protein 4F	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04553g00006.1	sp|A4W577|GHRB_ENT38	*-**	Glyoxylate/hydroxypyruvate reductase B	IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR016040 (NAD(P)-binding domain)	GO:0008152 (metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00484g00004.1	sp|Q22888|IF4E4_CAEEL	****	Eukaryotic translation initiation factor 4E-4	IPR001040 (Translation Initiation factor eIF- 4e), IPR023398 (Translation Initiation factor eIF- 4e-like  domain)	GO:0003723 (RNA binding), GO:0003743 (translation initiation factor activity), GO:0005737 (cytoplasm), GO:0006413 (translational initiation)
Niben101Scf00504g06023.1	AT2G20815.1	***-	Family of unknown function (DUF566) LENGTH=482	IPR007573 (Protein of unknown function DUF566)	
Niben101Scf05948g08009.1	AT1G60140.1	*-**	trehalose phosphate synthase LENGTH=861	IPR001830 (Glycosyl transferase, family 20)	GO:0003824 (catalytic activity), GO:0005992 (trehalose biosynthetic process)
Niben101Scf10694g00005.1	sp|Q5P325|RL16_AROAE	***-	50S ribosomal protein L16	IPR000114 (Ribosomal protein L16), IPR001351 (Ribosomal protein S3, C-terminal), IPR016180 (Ribosomal protein L10e/L16)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf05552g06002.1	sp|Q9XJ60|MAD50_ORYSJ	*-*-	MADS-box transcription factor 50	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf00428g08011.1	sp|P86809|NLTP2_APIGA	***-	Non-specific lipid-transfer protein 2	IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	
Niben101Scf05099g00009.1	AT4G16150.1	****	calmodulin binding;transcription regulators LENGTH=923	IPR000048 (IQ motif, EF-hand binding site), IPR014756 (Immunoglobulin E-set), IPR020683 (Ankyrin repeat-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding)
Niben101Scf04871g01001.1	emb|CDY27333.1|	***-	BnaC04g50720D [Brassica napus]	IPR008511 (Protein BYPASS-related)	
Niben101Scf12129g00001.1	sp|P61759|PFD3_MOUSE	*-**	Prefoldin subunit 3	IPR009053 (Prefoldin)	GO:0006457 (protein folding), GO:0016272 (prefoldin complex)
Niben101Scf00890g01025.1	sp|Q6NPT8|PP2B1_ARATH	***-	F-box protein PP2-B1	IPR001810 (F-box domain), IPR025886 (Phloem protein 2-like)	GO:0005515 (protein binding)
Niben101Scf15153g02001.1	sp|A4YL90|PCKA_BRASO	****	Phosphoenolpyruvate carboxykinase [ATP]	IPR001272 (Phosphoenolpyruvate carboxykinase, ATP-utilising)	GO:0004611 (phosphoenolpyruvate carboxykinase activity), GO:0004612 (phosphoenolpyruvate carboxykinase (ATP) activity), GO:0005524 (ATP binding), GO:0006094 (gluconeogenesis), GO:0017076 (purine nucleotide binding)
Niben101Scf02622g04002.1	sp|Q5R4F9|PPME1_PONAB	--*-	Protein phosphatase methylesterase 1		
Niben101Scf08149g01008.1	sp|Q84UQ3|C3H56_ORYSJ	*-*-	Zinc finger CCCH domain-containing protein 56	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf04992g00013.1	AT1G14890.1	****	Plant invertase/pectin methylesterase inhibitor superfamily protein LENGTH=219	IPR006501 (Pectinesterase inhibitor domain)	GO:0004857 (enzyme inhibitor activity), GO:0030599 (pectinesterase activity)
Niben101Scf01376g04027.1	sp|Q9SEE4|PIRL_SOLLC	***-	Pirin-like protein	IPR012093 (Pirin), IPR014710 (RmlC-like jelly roll fold)	
Niben101Scf09015g00004.1	AT5G17450.1	****	Heavy metal transport/detoxification superfamily protein LENGTH=149	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf03287g04003.1	sp|Q53E76|GTDC1_RAT	--*-	Glycosyltransferase-like domain-containing protein 1		
Niben101Scf07508g06009.1	sp|P60809|LPLA_BDEBA	--*-	Lipoate-protein ligase A		
Niben101Scf02235g00008.1	sp|Q8K0V4|CNOT3_MOUSE	*-**	CCR4-NOT transcription complex subunit 3	IPR007207 (CCR4-Not complex component, Not N-terminal domain), IPR007282 (NOT2/NOT3/NOT5)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf09436g04002.1	sp|Q06FW0|PSBC_PELHO	*-**	Photosystem II CP43 reaction center protein	IPR000932 (Photosystem antenna protein-like)	GO:0009521 (photosystem), GO:0009767 (photosynthetic electron transport chain), GO:0016020 (membrane), GO:0016168 (chlorophyll binding), GO:0019684 (photosynthesis, light reaction)
Niben101Scf04815g00004.1	AT1G09380.1	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=374	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf00715g01003.1			Unknown protein		
Niben101Scf00211g00019.1	gb|ABB46758.1|	*-*-	proline-rich protein, putative, expressed [Oryza sativa Japonica Group]	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf04048g00007.1			Unknown protein		
Niben101Scf00593g01002.1	sp|P20431|PMA3_ARATH	****	ATPase 3, plasma membrane-type	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf03757g06014.1	sp|Q9ULK6|RN150_HUMAN	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01653g01003.1	ref|XP_002518180.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF44313.1| conserved hypothetical protein [Ricinus communis]	IPR010264 (Plant self-incompatibility S1)	
Niben101Scf05206g05006.1	AT3G46460.1	***-	ubiquitin-conjugating enzyme 13 LENGTH=166	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf06153g00005.1	emb|CDY00539.1|	***-	BnaC04g23860D [Brassica napus]		
Niben101Scf02153g02002.1	sp|Q2Y9Y7|BIOH_NITMU	***-	Pimeloyl-[acyl-carrier protein] methyl ester esterase	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf02175g03013.1	sp|Q9STF0|LRKS3_ARATH	****	Receptor like protein kinase S.3	IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf08940g01038.1	sp|P25076|CY11_SOLTU	****	Cytochrome c1-1, heme protein, mitochondrial	IPR002326 (Cytochrome c1)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0020037 (heme binding)
Niben101Scf01308g03013.1	sp|Q8LET2|NUD11_ARATH	****	Nudix hydrolase 11	IPR015797 (NUDIX hydrolase domain-like)	GO:0016787 (hydrolase activity)
Niben101Scf02252g00002.1			Unknown protein		
Niben101Scf03188g00008.1	ref|XP_002524921.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF37418.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05082g04005.1	sp|Q9FKE6|CCT15_ARATH	****	Cyclin-T1-5	IPR015429 (Cyclin C/H/T/L)	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0019901 (protein kinase binding)
Niben101Scf05151g03019.1	gb|KEH23434.1|	***-	PRA1 family protein [Medicago truncatula]		
Niben101Ctg12306g00003.1	sp|Q86VV8|RTTN_HUMAN	--*-	Rotatin		
Niben101Scf02509g10007.1	sp|Q9LHJ8|SAP5_ARATH	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	IPR000058 (Zinc finger, AN1-type), IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf05360g01012.1			Unknown protein		
Niben101Scf09774g04006.1	sp|Q9SIV2|PSD2A_ARATH	****	26S proteasome non-ATPase regulatory subunit 2 homolog A	IPR016643 (26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit)	GO:0000502 (proteasome complex), GO:0005488 (binding), GO:0030234 (enzyme regulator activity), GO:0042176 (regulation of protein catabolic process)
Niben101Scf01580g02008.1	sp|Q5CZL1|GDAP2_XENTR	--*-	Ganglioside-induced differentiation-associated protein 2	IPR001251 (CRAL-TRIO domain)	
Niben101Scf01691g00001.1			Unknown protein		
Niben101Scf14566g00009.1	AT2G24070.1	*-*-	Family of unknown function (DUF566) LENGTH=609	IPR007573 (Protein of unknown function DUF566)	
Niben101Scf11806g00011.1	sp|A4XJ42|SECA_CALS8	--*-	Protein translocase subunit SecA	IPR004027 (SEC-C motif)	
Niben101Scf01267g04016.1	sp|Q9FMP8|RGAP6_ARATH	*-*-	Rho GTPase-activating protein 6	IPR008936 (Rho GTPase activation protein)	GO:0005622 (intracellular), GO:0007165 (signal transduction)
Niben101Scf03850g02012.1	tpg|DAA49181.1|	*-*-	TPA: hypothetical protein ZEAMMB73_191777 [Zea mays]		
Niben101Scf06463g00003.1	sp|Q5DTZ6|RN150_MOUSE	*-*-	RING finger protein 150	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01326g10015.1	gb|KEH40157.1|	***-	FACT complex subunit SSRP1 [Medicago truncatula]	IPR000969 (Structure-specific recognition protein), IPR009071 (High mobility group box domain), IPR011993 (Pleckstrin homology-like domain), IPR013719 (Domain of unknown function DUF1747), IPR024954 (SSRP1 domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus)
Niben101Scf01212g00013.1	AT3G15050.1	*-*-	IQ-domain 10 LENGTH=259	IPR000048 (IQ motif, EF-hand binding site)	GO:0005515 (protein binding)
Niben101Scf12928g00003.1	sp|Q9FMZ0|BKI1_ARATH	--*-	BRI1 kinase inhibitor 1		
Niben101Scf00606g02017.1	sp|C3KTL7|DAPH_CLOB6	***-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	IPR011004 (Trimeric LpxA-like)	
Niben101Scf19856g00003.1	sp|A7NIW0|NUOC_ROSCS	--**	NADH-quinone oxidoreductase subunit C	IPR001268 (NADH:ubiquinone oxidoreductase, 30kDa subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05565g02013.1	AT2G41100.1	****	Calcium-binding EF hand family protein LENGTH=324	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf01765g03016.1	ref|XP_007041692.1|	--*-	SAUR-like auxin-responsive protein family, putative [Theobroma cacao] gb|EOX97523.1| SAUR-like auxin-responsive protein family, putative [Theobroma cacao]		
Niben101Scf05552g04006.1	emb|CDY00261.1|	***-	BnaA06g21620D [Brassica napus]	IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf04205g03005.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf01091g00016.1	sp|D7MMW4|CSPLJ_ARALL	*-*-	CASP-like protein 4A2	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf04633g01009.1	AT3G05840.2	****	Protein kinase superfamily protein LENGTH=409	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03000g02009.1	sp|Q9SND4|HEC2_ARATH	***-	Transcription factor HEC2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf03376g04008.1	sp|Q9ZQR4|Y2452_ARATH	***-	DUF21 domain-containing protein	IPR000644 (CBS domain), IPR002550 (Domain of unknown function DUF21)	
Niben101Scf02393g01002.1	ref|NP_179175.3|	***-	P-loop containing nucle [Arabidopsis thaliana]	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf05712g01005.1	AT2G31010.1	*-**	Protein kinase superfamily protein LENGTH=775	IPR011009 (Protein kinase-like domain), IPR020683 (Ankyrin repeat-containing domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00151g03002.1	sp|Q9LVZ6|PDCT2_ARATH	***-	Phosphatidylcholine:diacylglycerol cholinephosphotransferase 2		
Niben101Scf04560g03018.1	sp|P86245|TCPB_MESAU	*-*-	T-complex protein 1 subunit beta (Fragments)	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf01267g01006.1	sp|G5EGA6|DHRS4_CAEEL	****	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01111g01001.1	AT4G22890.1	***-	PGR5-LIKE A LENGTH=324		
Niben101Scf02732g00013.1	sp|Q3TX08|TRM1_MOUSE	****	tRNA (guanine(26)-N(2))-dimethyltransferase	IPR002905 (tRNA methyltransferase, Trm1), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003723 (RNA binding), GO:0004809 (tRNA (guanine-N2-)-methyltransferase activity), GO:0008033 (tRNA processing)
Niben101Scf03357g00013.1	sp|Q8S944|DRP3A_ARATH	*-*-	Dynamin-related protein 3A	IPR000375 (Dynamin central domain), IPR020850 (GTPase effector domain, GED), IPR022812 (Dynamin superfamily)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf01383g05002.1	sp|A6NNS2|DRS7C_HUMAN	--*-	Dehydrogenase/reductase SDR family member 7C	IPR016040 (NAD(P)-binding domain)	
Niben101Scf02188g02024.1	AT3G27020.1	***-	YELLOW STRIPE like 6 LENGTH=676	IPR004813 (Oligopeptide transporter, OPT superfamily)	GO:0055085 (transmembrane transport)
Niben101Scf00039g01013.1	AT5G50400.1	****	purple acid phosphatase 27 LENGTH=611	IPR008963 (Purple acid phosphatase-like, N-terminal), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf02074g01008.1	ref|YP_005090400.1|	*-*-	orf118 (mitochondrion) [Phoenix dactylifera] gb|AEM43940.1| orf118 (mitochondrion) [Phoenix dactylifera]		
Niben101Scf02432g00011.1	sp|P52777|PALY_PINTA	****	Phenylalanine ammonia-lyase	IPR001106 (Aromatic amino acid lyase), IPR024083 (Fumarase/histidase, N-terminal)	GO:0003824 (catalytic activity), GO:0005737 (cytoplasm), GO:0006559 (L-phenylalanine catabolic process), GO:0009058 (biosynthetic process), GO:0016841 (ammonia-lyase activity)
Niben101Scf07391g00008.1	sp|F4IDU4|MBOA1_ARATH	***-	Lysophospholipid acyltransferase 1	IPR004299 (Membrane bound O-acyl transferase, MBOAT)	
Niben101Scf02622g12044.1			Unknown protein		
Niben101Scf11557g01011.1			Unknown protein		
Niben101Scf09870g00016.1	sp|Q09X29|ATPI_MORIN	*-**	ATP synthase subunit a, chloroplastic	IPR000568 (ATPase, F0 complex, subunit A), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o)), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf03338g01023.1	sp|Q92797|SYMPK_HUMAN	*-*-	Symplekin	IPR016024 (Armadillo-type fold), IPR021850 (Symplekin/Pta1), IPR022075 (Symplekin  C-terminal)	GO:0005488 (binding)
Niben101Scf00442g08005.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07296g01002.1	AT1G47380.1	***-	Protein phosphatase 2C family protein LENGTH=428	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf07226g05003.1	sp|Q7X6P3|RUS1_ARATH	***-	Protein root UVB sensitive 1, chloroplastic	IPR006968 (Root UVB sensitive family)	
Niben101Scf00458g01005.1	sp|Q77J49|UB222_WSSVS	--*-	RING finger containing E3 ubiquitin-protein ligase WSV222	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05845g03012.1	sp|P49689|RS30_ARATH	***-	40S ribosomal protein S30	IPR006846 (Ribosomal protein S30)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07399g00024.1	AT2G38025.1	***-	Cysteine proteinases superfamily protein LENGTH=234	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf01124g24003.1	AT5G49690.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=460	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf09284g02006.1	emb|CDX77728.1|	*-*-	BnaC07g19820D [Brassica napus]		
Niben101Scf00687g05007.1	sp|Q2LVL0|MSBA_SYNAS	****	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf19779g00010.1	AT4G32760.2	*-*-	ENTH/VHS/GAT family protein LENGTH=676		
Niben101Scf32603g00005.1	sp|A2YEZ6|SAP8_ORYSI	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	IPR000058 (Zinc finger, AN1-type), IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf07442g01011.1	AT3G62360.1	****	Carbohydrate-binding-like fold LENGTH=1227	IPR008969 (Carboxypeptidase-like, regulatory domain), IPR008970 (Collagen-binding surface protein Cna, B-type domain), IPR013783 (Immunoglobulin-like fold), IPR013784 (Carbohydrate-binding-like fold), IPR014766 (Carboxypeptidase, regulatory domain)	GO:0030246 (carbohydrate binding)
Niben101Scf04159g00003.1	ref|NP_001053680.1|	*-*-	product [Oryza sativa Japonica Group]	IPR007650 (Zf-FLZ domain)	
Niben101Scf02772g04002.1	sp|G2TRU5|COXM2_SCHPO	-**-	COX assembly mitochondrial protein 2	IPR013892 (Cytochrome c oxidase biogenesis protein Cmc1-like)	
Niben101Scf01742g05006.1	sp|Q3BQ83|SUCC_XANC5	***-	Succinyl-CoA ligase [ADP-forming] subunit beta	IPR013650 (ATP-grasp fold, succinyl-CoA synthetase-type), IPR016102 (Succinyl-CoA synthetase-like)	GO:0005524 (ATP binding)
Niben101Scf01249g00002.1	sp|Q84MA2|IP5P1_ARATH	*-**	Type I inositol 1,4,5-trisphosphate 5-phosphatase 1	IPR005135 (Endonuclease/exonuclease/phosphatase)	GO:0046856 (phosphatidylinositol dephosphorylation)
Niben101Scf01998g03022.1	AT4G36770.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=457	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf01740g16003.1	sp|Q9LZB2|GDL74_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf00213g00007.1	sp|Q4KTY1|KPSH1_PINFU	--*-	Serine/threonine-protein kinase H1 homolog	IPR011009 (Protein kinase-like domain)	GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04674g03006.1	emb|CDX70853.1|	***-	BnaC03g09370D [Brassica napus]		
Niben101Scf00674g03008.1	emb|CDW79054.1|	--*-	dual specificity catalytic domain containing protein [Stylonychia lemnae]		
Niben101Scf04778g00001.1	sp|Q8VY05|SWI3D_ARATH	***-	SWI/SNF complex subunit SWI3D	IPR000433 (Zinc finger, ZZ-type), IPR009057 (Homeodomain-like), IPR011991 (Winged helix-turn-helix DNA-binding domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02517g17014.1	AT3G46540.1	*-*-	ENTH/VHS family protein LENGTH=307	IPR008942 (ENTH/VHS)	
Niben101Scf06101g02022.1	sp|Q6GGC1|DNAJ_STAAR	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR015399 (Domain of unknown function DUF1977, DnaJ-like)	
Niben101Scf00837g08001.1	sp|O82345|BAG6_ARATH	*-**	BAG family molecular chaperone regulator 6	IPR000048 (IQ motif, EF-hand binding site), IPR003103 (BAG domain)	GO:0005515 (protein binding), GO:0051087 (chaperone binding)
Niben101Scf12528g00003.1	AT2G30320.1	*-*-	Pseudouridine synthase family protein LENGTH=510		
Niben101Scf01177g06005.1	AT5G09995.2	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=257		
Niben101Scf01083g05001.1	sp|P52482|UB2E1_MOUSE	***-	Ubiquitin-conjugating enzyme E2 E1	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf19307g00010.1			Unknown protein		
Niben101Scf07202g00006.1	ref|XP_007020150.1|	*-*-	Domain of Uncharacterized protein function, putative [Theobroma cacao] gb|EOY17375.1| Domain of Uncharacterized protein function, putative [Theobroma cacao]	IPR010369 (Protein of unknown function DUF966)	
Niben101Scf01302g07001.1	AT5G16010.1	***-	3-oxo-5-alpha-steroid 4-dehydrogenase family protein LENGTH=268	IPR001104 (3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal)	GO:0005737 (cytoplasm), GO:0006629 (lipid metabolic process), GO:0016021 (integral component of membrane), GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors)
Niben101Scf03368g01017.1	ref|XP_002311412.1|	*-*-	18S pre-rib gar2 [Populus trichocarpa]		
Niben101Scf33522g00011.1			Unknown protein		
Niben101Scf02636g10001.1	sp|Q84W80|FBL42_ARATH	***-	F-box/LRR-repeat protein		
Niben101Scf05152g03001.1	sp|Q9LSE7|B561C_ARATH	***-	Cytochrome b561 and DOMON domain-containing protein	IPR005018 (DOMON domain), IPR017214 (Uncharacterised conserved protein UCP037471)	GO:0016021 (integral component of membrane)
Niben101Scf02537g13010.1	AT4G08940.1	***-	Ubiquitin carboxyl-terminal hydrolase family protein LENGTH=395	IPR021099 (Plant organelle RNA recognition domain)	
Niben101Scf05654g00007.1			Unknown protein		
Niben101Scf03693g09005.1	AT5G66710.1	****	Protein kinase superfamily protein LENGTH=405	IPR011009 (Protein kinase-like domain), IPR015784 (Putative serine/threonine-protein kinase, plants)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10968g00007.1	AT1G64530.1	*-*-	Plant regulator RWP-RK family protein LENGTH=841	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0005515 (protein binding)
Niben101Scf01237g10010.1	sp|Q9FLS0|FB253_ARATH	***-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf00830g00002.1	ref|NP_565488.1|	****	folic acid binding / transferase [Arabidopsis thaliana] unknown protein [Arabidopsis thaliana] gb|AAK64127.1| unknown protein [Arabidopsis thaliana] gb|AAD20912.2| expressed protein [Arabidopsis thaliana] gb|AEC07083.1| folic acid binding / transferase [Arabidopsis thaliana]	IPR022384 (Formiminotransferase subdomain)	GO:0005542 (folic acid binding), GO:0008152 (metabolic process), GO:0016740 (transferase activity)
Niben101Scf04655g04018.1	sp|Q86YG4|NT5D4_HUMAN	***-	5'-nucleotidase domain-containing protein 4	IPR008380 (HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase), IPR023214 (HAD-like domain)	
Niben101Scf02077g01002.1	sp|Q8BG79|C19L2_MOUSE	*-*-	CWF19-like protein 2	IPR006767 (Cwf19-like protein, C-terminal domain-2), IPR006768 (Cwf19-like, C-terminal domain-1)	
Niben101Scf03166g00011.1	sp|O65555|Y4094_ARATH	***-	BTB/POZ domain-containing protein	IPR011333 (BTB/POZ fold), IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding), GO:0051260 (protein homooligomerization)
Niben101Scf01326g11010.1	ref|XP_003622403.1|	*-*-	AAA-ATPase 1-like protein [Medicago truncatula] gb|KEH31887.1| P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]	IPR025753 (AAA-type ATPase, N-terminal domain)	
Niben101Scf11689g01015.1			Unknown protein		
Niben101Scf05336g00012.1	AT4G02100.1	***-	Heat shock protein DnaJ with tetratricopeptide repeat LENGTH=546	IPR001623 (DnaJ domain), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf19584g00014.1	sp|Q43143|PMEU1_SOLLC	****	Pectinesterase/pectinesterase inhibitor U1	IPR006501 (Pectinesterase inhibitor domain), IPR011050 (Pectin lyase fold/virulence factor)	GO:0004857 (enzyme inhibitor activity), GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf15419g01004.1	sp|A2QI25|DED1_ASPNC	*-**	ATP-dependent RNA helicase ded1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf24868g00002.1	sp|Q9M352|RL362_ARATH	***-	60S ribosomal protein L36-2	IPR000509 (Ribosomal protein L36e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08137g05005.1	sp|Q67Z52|TBCB_ARATH	***-	Tubulin-folding cofactor B	IPR000938 (CAP Gly-rich domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf08716g00004.1	sp|P93031|GMD2_ARATH	****	GDP-mannose 4,6 dehydratase 2	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR006368 (GDP-mannose 4,6-dehydratase)	GO:0003824 (catalytic activity), GO:0008446 (GDP-mannose 4,6-dehydratase activity), GO:0019673 (GDP-mannose metabolic process), GO:0050662 (coenzyme binding)
Niben101Scf08203g00018.1	AT3G56820.1	***-	unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). LENGTH=220		
Niben101Scf06538g02010.1	ref|NP_191472.2|	--*-	Cysteine/Histidine-rich C1 domain family protein [Arabidopsis thaliana] gb|AEE79881.1| Cysteine/Histidine-rich C1 domain family protein [Arabidopsis thaliana]		
Niben101Scf00062g01025.1	sp|B9DUB2|GUAA_STRU0	*-*-	GMP synthase [glutamine-hydrolyzing]	IPR029062 (Class I glutamine amidotransferase-like)	
Niben101Scf00054g00013.1	sp|P81392|MYB06_ANTMA	***-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00700g06021.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0004672 (protein kinase activity), GO:0004713 (protein tyrosine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0030247 (polysaccharide binding)
Niben101Scf01226g01001.1	sp|Q8BYW9|EOGT_MOUSE	*-**	EGF domain-specific O-linked N-acetylglucosamine transferase	IPR007657 (Glycosyltransferase AER61, uncharacterised)	GO:0016757 (transferase activity, transferring glycosyl groups)
Niben101Scf09870g00015.1	AT2G01590.1	***-	chlororespiratory reduction 3 LENGTH=174		
Niben101Scf00022g06001.1	sp|Q9SMY8|FBL15_ARATH	***-	F-box/LRR-repeat protein 15	IPR001810 (F-box domain), IPR006553 (Leucine-rich repeat, cysteine-containing subtype)	GO:0005515 (protein binding)
Niben101Scf04663g00007.1	ref|XP_002514353.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF48307.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00536g05020.1	AT3G07030.1	*-**	Alba DNA/RNA-binding protein LENGTH=405	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Scf00167g01004.1	gb|AES77964.2|	***-	WRKY transcription factor-like protein [Medicago truncatula]		
Niben101Scf11557g01010.1	ref|WP_026426025.1|	--*-	malto-oligosyltrehalose trehalohydrolase [Actinokineospora inagensis]		
Niben101Scf05395g03019.1	AT1G20640.1	***-	Plant regulator RWP-RK family protein LENGTH=844	IPR000270 (Phox/Bem1p), IPR003035 (RWP-RK domain)	GO:0005515 (protein binding)
Niben101Scf01677g06019.1	sp|Q01440|GTR1_LEIDO	****	Membrane transporter D1	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf09082g00017.1			Unknown protein		
Niben101Scf02074g01009.1			Unknown protein		
Niben101Scf03743g00006.1	gb|ADL70624.1|	--*-	indole-3-acetic acid inducible 12 [Arabidopsis thaliana]		
Niben101Scf04160g01002.1	sp|Q42059|GUN6_ARATH	***-	Endoglucanase 6	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like), IPR019028 (Carbohydrate binding domain CBM49)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf03066g00008.1	sp|Q1CSM2|GUAA_HELPH	--*-	GMP synthase [glutamine-hydrolyzing]		
Niben101Scf00439g07002.1	sp|P92985|RBP1C_ARATH	****	Ran-binding protein 1 homolog c	IPR011993 (Pleckstrin homology-like domain)	GO:0046907 (intracellular transport)
Niben101Scf12628g00002.1	sp|P27898|MYBP_MAIZE	*-*-	Myb-related protein P	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00312g01008.1	sp|Q09466|WHT3_CAEEL	*-**	ABC transporter ATP-binding protein/permease wht-3	IPR003439 (ABC transporter-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016887 (ATPase activity)
Niben101Scf00406g05020.1	sp|Q12893|TM115_HUMAN	***-	Transmembrane protein 115	IPR013861 (Protein of unknown function DUF1751, integral membrane, eukaryotic), IPR022764 (Peptidase S54, rhomboid domain)	GO:0004252 (serine-type endopeptidase activity), GO:0016021 (integral component of membrane)
Niben101Scf00398g00015.1	AT1G78870.1	***-	ubiquitin-conjugating enzyme 35 LENGTH=154	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR023313 (Ubiquitin-conjugating enzyme, active site)	
Niben101Scf02750g01004.1	sp|Q10Q07|NNJA1_ORYSJ	*-*-	Ninja-family protein	IPR012463 (Ninja)	
Niben101Scf00272g10013.1	sp|Q9CYW4|HDHD3_MOUSE	****	Haloacid dehalogenase-like hydrolase domain-containing protein 3	IPR006439 (HAD hydrolase, subfamily IA), IPR023214 (HAD-like domain)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf03907g00004.1	gb|ACN57989.1|	*-*-	At5g51670-like protein [Capsella grandiflora]	IPR007700 (Protein of unknown function DUF668), IPR021864 (Protein of unknown function DUF3475)	
Niben101Scf05324g04002.1	sp|Q9STM6|GDL57_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02381g04026.1			Unknown protein		
Niben101Scf02755g06020.1	sp|Q20636|GBB2_CAEEL	*-**	Guanine nucleotide-binding protein subunit beta-2	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat)	GO:0005515 (protein binding)
Niben101Scf09372g00004.1	AT5G38470.1	****	Rad23 UV excision repair protein family LENGTH=378	IPR004806 (UV excision repair protein Rad23), IPR009060 (UBA-like), IPR029071 (Ubiquitin-related domain)	GO:0003684 (damaged DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0006289 (nucleotide-excision repair), GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
Niben101Scf03109g00008.1	ref|XP_002523800.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF38526.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04556g01001.1	tpg|DAA40225.1|	***-	TPA: hypothetical protein ZEAMMB73_062691 [Zea mays]		
Niben101Scf01192g07004.1	gb|ABE01833.1|	***-	CK25 [Nicotiana tabacum]		
Niben101Scf08755g01012.1	ref|XP_002509497.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF50884.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01091g00017.1	AT5G40270.1	***-	HD domain-containing metal-dependent phosphohydrolase family protein LENGTH=473	IPR003607 (HD/PDEase domain)	
Niben101Scf06412g01004.1	sp|Q8VYR7|BOR1_ARATH	***-	Boron transporter 1	IPR003020 (Bicarbonate transporter, eukaryotic)	GO:0005452 (inorganic anion exchanger activity), GO:0006820 (anion transport), GO:0016020 (membrane), GO:0016021 (integral component of membrane)
Niben101Scf02026g08001.1	sp|O14647|CHD2_HUMAN	*-**	Chromodomain-helicase-DNA-binding protein 2	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005524 (ATP binding)
Niben101Scf03045g07003.1	sp|P51824|ARF1_SOLTU	*-*-	ADP-ribosylation factor 1	IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0007264 (small GTPase mediated signal transduction)
Niben101Scf05188g01017.1	sp|A1A5X2|FBXL7_DANRE	--*-	F-box/LRR-repeat protein 7		
Niben101Scf07827g00014.1	emb|CDY14195.1|	***-	BnaA08g13260D [Brassica napus]		
Niben101Scf25021g01020.1	AT1G45207.2	***-	Remorin family protein LENGTH=555		
Niben101Scf02798g02024.1			Unknown protein		
Niben101Scf04313g01012.1	AT1G46264.1	****	heat shock transcription factor B4 LENGTH=348	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf08758g00011.1	emb|CDX97836.1|	***-	BnaC04g41030D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf07880g02006.1	sp|P29162|ASOL_TOBAC	--*-	L-ascorbate oxidase homolog		
Niben101Scf07709g01025.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05942g00001.1	sp|Q8L7F9|B3GTF_ARATH	****	Beta-1,3-galactosyltransferase 15	IPR002659 (Glycosyl transferase, family 31), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane), GO:0030246 (carbohydrate binding)
Niben101Scf08643g03017.1	dbj|BAD99418.1|	****	acyl-transferase [Capsicum annuum]	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00885g20004.1	sp|Q9ZTX8|ARFF_ARATH	*-**	Auxin response factor 6	IPR003311 (AUX/IAA protein), IPR010525 (Auxin response factor), IPR015300 (DNA-binding pseudobarrel domain)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009725 (response to hormone), GO:0046983 (protein dimerization activity)
Niben101Scf05797g01010.1	AT1G68750.1	****	phosphoenolpyruvate carboxylase 4 LENGTH=1032	IPR021135 (Phosphoenolpyruvate carboxylase)	GO:0003824 (catalytic activity), GO:0006099 (tricarboxylic acid cycle), GO:0008964 (phosphoenolpyruvate carboxylase activity), GO:0015977 (carbon fixation)
Niben101Scf01322g00009.1			Unknown protein		
Niben101Scf04090g00006.1	AT2G37035.1	***-	unknown protein; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). LENGTH=433		
Niben101Scf00024g04032.1	sp|Q9M907|PP217_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002625 (Smr protein/MutS2 C-terminal), IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05756g00005.1	ref|NP_001043414.2|	*-*-	[Oryza sativa Japonica Group] dbj|BAF05328.2| [Oryza sativa Japonica Group]	IPR027806 (Harbinger transposase-derived nuclease domain)	
Niben101Scf01477g03006.1	emb|CDX68330.1|	***-	BnaA07g23700D [Brassica napus]		
Niben101Ctg11863g00003.1	sp|Q9SZH2|PER43_ARATH	****	Peroxidase 43	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06357g02002.1	AT4G35240.1	***-	Protein of unknown function (DUF630 and DUF632) LENGTH=865	IPR006867 (Domain of unknown function DUF632), IPR006868 (Domain of unknown function DUF630)	
Niben101Scf03056g01012.1	sp|P0C8Q0|UBX1_EMENI	--*-	UBX domain-containing protein 1	IPR012989 (SEP domain)	
Niben101Scf01395g01016.1	AT4G20860.1	****	FAD-binding Berberine family protein LENGTH=530	IPR012951 (Berberine/berberine-like), IPR016166 (FAD-binding, type 2)	GO:0003824 (catalytic activity), GO:0008762 (UDP-N-acetylmuramate dehydrogenase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01834g01021.1	gb|KDE68328.1|	--*-	membrane protein, partial [Fusobacterium necrophorum DJ-1]		
Niben101Scf07370g02015.1	ref|NP_001066089.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf02272g02003.1	AT5G22510.1	***-	alkaline/neutral invertase LENGTH=617	IPR008928 (Six-hairpin glycosidase-like), IPR024746 (Glycosyl hydrolase family 100)	GO:0003824 (catalytic activity), GO:0033926 (glycopeptide alpha-N-acetylgalactosaminidase activity)
Niben101Scf02854g11006.1	sp|A2A559|PGAP3_MOUSE	***-	Post-GPI attachment to proteins factor 3	IPR007217 (Per1-like)	
Niben101Scf04114g00031.1	sp|Q661C0|RS13_BORGA	***-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH), IPR027437 (30s ribosomal protein S13, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01494g00007.1	sp|Q9M817|PTR6_ARATH	***-	Protein NRT1/ PTR FAMILY 1.2	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf00497g06001.1	sp|Q8DLP3|ATPA_THEEB	*-**	ATP synthase subunit alpha	IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf01911g08012.1	sp|A2BT10|CH602_PROMS	***-	60 kDa chaperonin 2	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0005737 (cytoplasm), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process)
Niben101Scf02182g18003.1	sp|O82528|RL15_PETHY	***-	60S ribosomal protein L15	IPR000439 (Ribosomal protein L15e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00593g01001.1	sp|B2V2I6|DNAJ_CLOBA	***-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR002939 (Chaperone DnaJ, C-terminal)	GO:0006457 (protein folding), GO:0051082 (unfolded protein binding)
Niben101Scf00687g08007.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR024788 (Malectin-like carbohydrate-binding domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02927g09006.1	sp|Q4P9T3|CCR4_USTMA	*-*-	Glucose-repressible alcohol dehydrogenase transcriptional effector	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf02164g00002.1	emb|CDY01339.1|	***-	BnaA07g11120D [Brassica napus]	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf00153g00021.1	sp|C0HJB3|MANA_CANEN	****	Alpha-mannosidase	IPR011013 (Galactose mutarotase-like domain), IPR011330 (Glycoside hydrolase/deacetylase, beta/alpha-barrel), IPR013780 (Glycosyl hydrolase, family 13, all-beta), IPR028995 (Glycoside hydrolase, families 57/38, central domain)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004559 (alpha-mannosidase activity), GO:0005975 (carbohydrate metabolic process), GO:0006013 (mannose metabolic process), GO:0008270 (zinc ion binding), GO:0015923 (mannosidase activity), GO:0030246 (carbohydrate binding)
Niben101Scf00780g01026.1	sp|Q8CIA9|HIAL1_MOUSE	***-	Hippocampus abundant transcript-like protein 1	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0005886 (plasma membrane), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf06890g01017.1	ref|XP_007017834.1|	****	Transcription elongation factor family protein, putative isoform 1 [Theobroma cacao] ref|XP_007017835.1| Transcription elongation factor family protein, putative isoform 1 [Theobroma cacao] gb|EOY15059.1| Transcription elongation factor family protein, putative isoform 1 [Theobroma cacao] gb|EOY15060.1| Transcription elongation factor family protein, putative isoform 1 [Theobroma cacao]	IPR017923 (Transcription factor IIS, N-terminal)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated)
Niben101Scf01111g05011.1			Unknown protein		
Niben101Scf12502g00005.1	sp|Q93ZD7|MRS24_ARATH	*-*-	Magnesium transporter MRS2-4		
Niben101Scf08603g02008.1			Unknown protein		
Niben101Scf00168g05002.1	sp|O80568|ITPK4_ARATH	****	Inositol-tetrakisphosphate 1-kinase 4	IPR008656 (Inositol-tetrakisphosphate 1-kinase)	GO:0000287 (magnesium ion binding), GO:0005524 (ATP binding), GO:0005622 (intracellular), GO:0032957 (inositol trisphosphate metabolic process), GO:0047325 (inositol tetrakisphosphate 1-kinase activity), GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity), GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
Niben101Scf01795g04034.1	sp|Q9MA92|FPP3_ARATH	*-*-	Filament-like plant protein 3	IPR008587 (Filament-like plant protein)	
Niben101Scf34386g00010.1	AT2G37180.1	***-	Aquaporin-like superfamily protein LENGTH=285	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf07163g00012.1	sp|Q5PNS0|Y3228_ARATH	*-*-	PHD finger protein	IPR001025 (Bromo adjacent homology (BAH) domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0003682 (chromatin binding), GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf16416g00003.1	sp|P40283|H2B11_ARATH	***-	Histone H2B.11	IPR000558 (Histone H2B), IPR009072 (Histone-fold)	GO:0000786 (nucleosome), GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0046982 (protein heterodimerization activity)
Niben101Scf04742g03020.1	sp|Q9FMV5|NFYC4_ARATH	*-*-	Nuclear transcription factor Y subunit C-4	IPR009072 (Histone-fold)	GO:0005622 (intracellular), GO:0043565 (sequence-specific DNA binding), GO:0046982 (protein heterodimerization activity)
Niben101Scf05044g04029.1			Unknown protein		
Niben101Scf08445g02049.1	AT2G02170.1	***-	Remorin family protein LENGTH=486	IPR005516 (Remorin, C-terminal)	
Niben101Scf13683g00001.1	AT1G04945.3	***-	HIT-type Zinc finger family protein LENGTH=644	IPR007529 (Zinc finger, HIT-type)	
Niben101Scf05767g07011.1	sp|A5GTM0|GATA_SYNR3	***-	Glutamyl-tRNA(Gln) amidotransferase subunit A	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf02411g01006.1	sp|Q13956|CNCG_HUMAN	--*-	Retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma		
Niben101Scf04886g05003.1	sp|P17879|HS71B_MOUSE	***-	Heat shock 70 kDa protein 1B	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf04909g00014.1	sp|P48620|FAD3C_SESIN	*-*-	Omega-3 fatty acid desaturase, chloroplastic	IPR005804 (Fatty acid desaturase, type 1), IPR021863 (Protein of unknown function DUF3474)	GO:0006629 (lipid metabolic process), GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water), GO:0055114 (oxidation-reduction process)
Niben101Scf02085g13011.1	sp|P24759|ATI_VACCW	--*-	A-type inclusion protein A25	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf00631g01003.1			Unknown protein		
Niben101Scf05301g05001.1	sp|P38055|YDJE_ECOLI	****	Inner membrane metabolite transport protein YdjE	IPR005828 (General substrate transporter), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity), GO:0022891 (substrate-specific transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf04044g17011.1	sp|O80877|EF4L1_ARATH	***-	Protein ELF4-LIKE 1	IPR009741 (Protein of unknown function DUF1313)	
Niben101Scf17473g00009.1	sp|P46300|RS4_SOLTU	***-	40S ribosomal protein S4	IPR000876 (Ribosomal protein S4e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf08001g02006.1	emb|CDX95432.1|	***-	BnaC01g33240D [Brassica napus]		
Niben101Scf35444g00004.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf06004g00018.1			Unknown protein		
Niben101Scf03111g01003.1	sp|P48980|BGAL_SOLLC	*-*-	Beta-galactosidase	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf05123g01005.1	AT3G47830.1	*-**	DNA glycosylase superfamily protein LENGTH=293	IPR011257 (DNA glycosylase), IPR023170 (Helix-turn-helix, base-excision DNA repair, C-terminal), IPR028925 (Demeter, RRM-fold domain)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf02895g02004.1	emb|CDY60739.1|	***-	BnaA07g35980D [Brassica napus]	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf07895g01007.1	AT1G23780.1	***-	F-box family protein LENGTH=475	IPR001810 (F-box domain), IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf02864g05008.1	sp|Q40585|VATL_TOBAC	****	V-type proton ATPase 16 kDa proteolipid subunit	IPR000245 (V-ATPase proteolipid subunit)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033179 (proton-transporting V-type ATPase, V0 domain)
Niben101Scf01655g03007.1	emb|CDY28324.1|	--*-	BnaC03g66350D [Brassica napus]		
Niben101Scf07048g02021.1	sp|Q5N0G1|DNAJ_SYNP6	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf06033g00001.1	sp|Q24K02|IDE_BOVIN	***-	Insulin-degrading enzyme	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0046872 (metal ion binding)
Niben101Scf02339g01013.1	AT2G26640.1	***-	3-ketoacyl-CoA synthase 11 LENGTH=509	IPR012392 (Very-long-chain 3-ketoacyl-CoA synthase), IPR016039 (Thiolase-like)	GO:0003824 (catalytic activity), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0008610 (lipid biosynthetic process), GO:0016020 (membrane), GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf07152g00009.1	sp|A7SGF0|MF2NB_NEMVE	--*-	Protein MEF2BNB homolog	IPR019320 (Uncharacterised protein family UPF0402)	
Niben101Ctg12937g00004.1	sp|Q9FNA2|PAO1_ARATH	*-*-	Polyamine oxidase 1		
Niben101Scf06853g00002.1	ref|XP_007049403.1|	***-	Cell wall protein AWA1 isoform 1 [Theobroma cacao] gb|EOX93560.1| Cell wall protein AWA1 isoform 1 [Theobroma cacao]	IPR009060 (UBA-like), IPR009719 (Protein of unknown function DUF1296, plant)	GO:0005515 (protein binding)
Niben101Scf01402g02034.1	gb|ABI34321.1|	*-*-	RNase H family protein [Solanum demissum]		
Niben101Scf01938g06013.1	sp|Q9FYE1|MCA9_ARATH	***-	Metacaspase-9	IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02266g00006.1	sp|Q9M2Z5|FBL53_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf16254g00007.1	gb|AEW48193.1|	*-*-	disease resistance protein RGH4 [Solanum chacoense]		
Niben101Scf08088g02008.1			Unknown protein		
Niben101Scf05961g02011.1	sp|Q67ZB3|FRL3_ARATH	***-	FRIGIDA-like protein 3	IPR012474 (Frigida-like)	
Niben101Scf01777g03022.1	sp|P30925|EF2_SULSO	***-	Elongation factor 2	IPR000640 (Translation elongation factor EFG, V domain), IPR000795 (Elongation factor, GTP-binding domain), IPR005225 (Small GTP-binding protein domain), IPR009000 (Translation protein, beta-barrel domain), IPR009022 (Elongation factor G, III-V domain), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf05178g00001.1	AT3G17090.1	****	Protein phosphatase 2C family protein LENGTH=384	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf07498g02019.1	sp|Q8N8Q9|NIPA2_HUMAN	****	Magnesium transporter NIPA2	IPR008521 (Magnesium transporter NIPA)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf03460g04004.1	sp|Q42578|PER53_ARATH	****	Peroxidase 53	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06848g10016.1	sp|Q9M1D8|PP288_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf06267g03010.1	AT2G17970.1	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=507	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01943g07002.1	ref|XP_002529236.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF33149.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf02738g05002.1	sp|Q9FMC2|BZP43_ARATH	***-	Basic leucine zipper 43	IPR004827 (Basic-leucine zipper domain), IPR006886 (DNA-directed RNA polymerase III subunit Rpc5)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0003899 (DNA-directed RNA polymerase activity), GO:0005634 (nucleus), GO:0006351 (transcription, DNA-templated), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05468g04010.1	sp|Q9SY02|PP301_ARATH	***-	Pentatricopeptide repeat-containing protein		
Niben101Scf01634g07029.1	AT2G36780.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02735g01004.1	sp|Q52QH4|NAC68_ORYSJ	*-*-	NAC domain-containing protein 68	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf08643g01001.1	emb|CDY45481.1|	*-*-	BnaCnng12400D [Brassica napus]		
Niben101Scf18195g00005.1	AT3G49260.3	*-*-	IQ-domain 21 LENGTH=472	IPR025064 (Domain of unknown function DUF4005)	
Niben101Scf00675g01003.1	AT1G55810.1	****	uridine kinase-like 3 LENGTH=466	IPR000764 (Uridine kinase like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029057 (Phosphoribosyltransferase-like)	GO:0004849 (uridine kinase activity), GO:0005524 (ATP binding), GO:0008152 (metabolic process), GO:0016301 (kinase activity), GO:0044206 (UMP salvage)
Niben101Scf00031g01003.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0004497 (monooxygenase activity), GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09604g01003.1	gb|KEH39304.1|	*-*-	AP2-like ethylene-responsive transcription factor [Medicago truncatula]		
Niben101Scf03766g12001.1	gb|KEH19175.1|	*-*-	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]	IPR005135 (Endonuclease/exonuclease/phosphatase)	
Niben101Scf02085g14006.1	gb|AEV46324.1|	*-*-	apoplastic invertase [Solanum tuberosum]		
Niben101Scf03143g11002.1	sp|A1WUN4|FOLD_HALHL	***-	Bifunctional protein FolD	IPR000672 (Tetrahydrofolate dehydrogenase/cyclohydrolase)	GO:0003824 (catalytic activity), GO:0004488 (methylenetetrahydrofolate dehydrogenase (NADP+) activity), GO:0009396 (folic acid-containing compound biosynthetic process), GO:0055114 (oxidation-reduction process)
Niben101Scf16236g00013.1	AT3G49950.1	***-	GRAS family transcription factor LENGTH=410	IPR005202 (Transcription factor GRAS)	
Niben101Scf01372g05004.1	AT3G44260.1	***-	Polynucleotidyl transferase, ribonuclease H-like superfamily protein LENGTH=280	IPR006941 (Ribonuclease CAF1), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005634 (nucleus)
Niben101Scf00603g08021.1	AT4G00110.1	****	UDP-D-glucuronate 4-epimerase 3 LENGTH=430	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf06218g00003.1	sp|Q2HJ81|TBB6_BOVIN	***-	Tubulin beta-6 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf17513g00008.1	sp|Q6AWX8|GRF11_ORYSJ	*-*-	Growth-regulating factor 11	IPR014977 (WRC), IPR014978 (Glutamine-Leucine-Glutamine, QLQ)	GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
Niben101Scf12987g00002.1	sp|Q8L5A7|SOT15_ARATH	*-**	Cytosolic sulfotransferase 15	IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0008146 (sulfotransferase activity)
Niben101Scf01181g01001.1	sp|Q9C9U3|DOX2_ARATH	***-	Alpha-dioxygenase 2	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02369g05003.1			Unknown protein		
Niben101Scf01438g00004.1	sp|Q9FXJ1|GDL6_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf03045g02019.1	sp|Q9LD14|PILR1_THUPL	***-	Bifunctional pinoresinol-lariciresinol reductase 1	IPR016040 (NAD(P)-binding domain)	
Niben101Scf05883g00011.1	AT1G47740.1	***-	PPPDE putative thiol peptidase family protein LENGTH=279	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf08991g02027.1	sp|Q55669|CTPA_SYNY3	--*-	Carboxyl-terminal-processing protease	IPR029045 (ClpP/crotonase-like domain)	
Niben101Scf01682g01008.1	ref|NP_177685.1|	--*-	Forkhead-associated (FHA) domain-containing protein [Arabidopsis thaliana] gb|AEE35730.1| Forkhead-associated (FHA) domain-containing protein [Arabidopsis thaliana]		
Niben101Scf03129g02008.1	AT4G16380.1	*-**	Heavy metal transport/detoxification superfamily protein LENGTH=254	IPR006121 (Heavy metal-associated domain, HMA)	GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Scf01394g01023.1	sp|Q70D30|MATK_ANTAN	*-*-	Maturase K	IPR000589 (Ribosomal protein S15), IPR024942 (Maturase MatK, N-terminal domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05942g02008.1	sp|Q9LNT9|ASK4_ARATH	***-	SKP1-like protein 4	IPR001232 (S-phase kinase-associated protein 1-like), IPR011333 (BTB/POZ fold), IPR016072 (SKP1 component, dimerisation)	GO:0006511 (ubiquitin-dependent protein catabolic process)
Niben101Scf08250g02011.1			Unknown protein		
Niben101Scf04899g03016.1	ref|NP_001043856.1|	*-*-	product [Oryza sativa Japonica Group]	IPR021319 (Protein of unknown function DUF2921)	
Niben101Scf01191g06012.1	AT2G17290.1	****	Calcium-dependent protein kinase family protein LENGTH=544	IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06094g03002.1	gb|KEH29638.1|	***-	transferring glycosyl group transferase [Medicago truncatula]	IPR006740 (Protein of unknown function DUF604)	
Niben101Scf02862g01006.1	sp|Q9FWX2|NAC7_ARATH	***-	NAC domain-containing protein 7	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06772g01009.1	sp|Q6ZRR7|LRRC9_HUMAN	*-*-	Leucine-rich repeat-containing protein 9	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf02944g01015.1	gb|AAU90303.2|	--*-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf00495g01026.1	AT5G61140.2	*-*-	U5 small nuclear ribonucleoprotein helicase LENGTH=2157		
Niben101Ctg12716g00002.1	sp|Q8LLE5|FPP_SOLLC	***-	Filament-like plant protein	IPR008587 (Filament-like plant protein)	
Niben101Scf06387g01017.1	sp|O04504|PPR27_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf06186g06012.1	sp|A2RVM0|TIC32_ARATH	*-*-	Short-chain dehydrogenase TIC 32, chloroplastic		
Niben101Scf08533g00005.1	sp|Q8PX16|ARGD_METMA	***-	Acetylornithine aminotransferase	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006525 (arginine metabolic process), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf06822g00002.1	AT2G35330.1	***-	RING/U-box superfamily protein LENGTH=738	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05627g00006.1	sp|Q8L710|CRK17_ARATH	*-**	Cysteine-rich receptor-like protein kinase 17	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf32880g00002.1			Unknown protein		
Niben101Scf01899g02003.1	AT1G30360.1	***-	Early-responsive to dehydration stress protein (ERD4) LENGTH=724	IPR003864 (Domain of unknown function DUF221), IPR027815 (Domain of unknown function DUF4463)	GO:0016020 (membrane)
Niben101Scf02869g18005.1	sp|A2WWV5|ERG1_ORYSI	***-	Elicitor-responsive protein 1	IPR000008 (C2 domain)	GO:0005515 (protein binding)
Niben101Scf07829g00010.1	sp|Q9LVQ5|PP432_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf24096g00018.1	sp|Q9C7S0|BZI60_ARATH	****	bZIP transcription factor 60	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf09649g06014.1	sp|Q9FY79|LAC14_ARATH	***-	Laccase-14	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf03903g00004.1	ref|XP_002525136.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF37263.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf11444g00002.1	AT1G05840.1	***-	Eukaryotic aspartyl protease family protein LENGTH=485	IPR001461 (Aspartic peptidase), IPR021109 (Aspartic peptidase domain)	GO:0004190 (aspartic-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05588g12010.1	sp|O49884|RL30_LUPLU	***-	60S ribosomal protein L30	IPR000231 (Ribosomal protein L30e), IPR022991 (Ribosomal protein L30e, conserved site), IPR029064 (50S ribosomal protein L30e-like)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05857g01001.1	sp|P41115|RS11_XENLA	--*-	40S ribosomal protein S11		
Niben101Scf05711g04017.1	AT2G41950.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to 53 proteins in 24 species: Archae - 0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=266		
Niben101Scf08673g02018.1			Unknown protein	IPR025558 (Domain of unknown function DUF4283)	
Niben101Scf08514g00001.1	ref|XP_007047826.1|	***-	Folic acid and derivative biosynthetic process, putative [Theobroma cacao] gb|EOX91983.1| Folic acid and derivative biosynthetic process, putative [Theobroma cacao]	IPR005645 (Serine hydrolase FSH)	
Niben101Scf05382g03009.1	sp|Q9SSF9|PP123_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain), IPR027434 (Homing endonuclease)	GO:0004519 (endonuclease activity), GO:0005515 (protein binding)
Niben101Scf04286g01030.1	sp|P93163|GPA2_SOYBN	*-**	Guanine nucleotide-binding protein alpha-2 subunit	IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR011011 (Zinc finger, FYVE/PHD-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0004871 (signal transducer activity), GO:0007165 (signal transduction), GO:0007186 (G-protein coupled receptor signaling pathway), GO:0019001 (guanyl nucleotide binding), GO:0031683 (G-protein beta/gamma-subunit complex binding)
Niben101Scf01616g06001.1			Unknown protein		
Niben101Scf03224g05007.1	AT5G15350.1	*-*-	early nodulin-like protein 17 LENGTH=172	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf00702g00022.1	AT2G07739.1	*-*-	Ycf1 protein LENGTH=199	IPR008896 (Uncharacterised protein family Ycf1)	
Niben101Scf04625g00002.1	gb|AES96134.2|	*-*-	carboxyl-terminal peptidase [Medicago truncatula]	IPR004314 (Domain of unknown function DUF239)	
Niben101Scf09170g02002.1	sp|Q9SLK6|ALA6_ARATH	****	Phospholipid-transporting ATPase 6	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf20039g01004.1	AT4G03420.1	***-	Protein of unknown function (DUF789) LENGTH=310	IPR008507 (Protein of unknown function DUF789)	
Niben101Scf11347g00004.1	sp|Q211H0|RS13_RHOPB	***-	30S ribosomal protein S13	IPR001892 (Ribosomal protein S13), IPR010979 (Ribosomal protein S13-like, H2TH), IPR027437 (30s ribosomal protein S13, C-terminal)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf38767g00008.1	sp|Q5KWP5|OBG_GEOKA	*-*-	GTPase Obg	IPR006169 (GTP1/OBG domain)	GO:0005525 (GTP binding)
Niben101Scf09116g02011.1	ref|XP_003590809.1|	***-	Tetratricopeptide repeat protein 7B [Medicago truncatula] gb|AES61060.1| TPR 7B-like protein [Medicago truncatula]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf11724g04018.1	sp|Q9T076|ENL2_ARATH	*-*-	Early nodulin-like protein 2	IPR008972 (Cupredoxin)	GO:0009055 (electron carrier activity)
Niben101Scf01980g02001.1	AT1G36160.1	****	acetyl-CoA carboxylase 1 LENGTH=2254	IPR000089 (Biotin/lipoyl attachment), IPR011761 (ATP-grasp fold), IPR011764 (Biotin carboxylation domain), IPR013537 (Acetyl-CoA carboxylase, central domain), IPR016185 (Pre-ATP-grasp domain), IPR029045 (ClpP/crotonase-like domain)	GO:0003824 (catalytic activity), GO:0003989 (acetyl-CoA carboxylase activity), GO:0004075 (biotin carboxylase activity), GO:0005524 (ATP binding), GO:0006633 (fatty acid biosynthetic process), GO:0008152 (metabolic process), GO:0016874 (ligase activity), GO:0046872 (metal ion binding)
Niben101Scf02044g12031.1	AT1G79070.1	***-	SNARE-associated protein-related LENGTH=138	IPR028119 (Snapin/Pallidin/Snn1)	GO:0006886 (intracellular protein transport), GO:0031083 (BLOC-1 complex)
Niben101Scf02272g04022.1	sp|Q96321|IMA1_ARATH	***-	Importin subunit alpha-1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf07413g05009.1	ref|XP_002526852.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35483.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00180g07006.1	sp|O04084|SCP31_ARATH	*-**	Serine carboxypeptidase-like 31	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf00712g13013.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01936g06004.1	sp|Q9XEE2|ANXD2_ARATH	***-	Annexin D2	IPR001464 (Annexin)	GO:0005509 (calcium ion binding), GO:0005544 (calcium-dependent phospholipid binding)
Niben101Scf15903g01012.1	gb|ACG36548.1|	***-	fiber protein Fb34 [Zea mays]	IPR009606 (Protein of unknown function DUF1218)	
Niben101Scf09447g01014.1	sp|Q9DC07|LNEBL_MOUSE	--**	LIM zinc-binding domain-containing Nebulette	IPR001781 (Zinc finger, LIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf02174g03007.1	sp|P74158|SUHB_SYNY3	****	Inositol-1-monophosphatase	IPR000760 (Inositol monophosphatase)	GO:0046854 (phosphatidylinositol phosphorylation)
Niben101Scf11254g00008.1	AT5G12130.1	****	integral membrane TerC family protein LENGTH=384	IPR005496 (Integral membrane protein TerC)	GO:0016021 (integral component of membrane)
Niben101Scf00320g02006.1	gb|AER41627.1|	--*-	GRF+domain+protein [Oryza glumipatula]		
Niben101Scf00912g05005.1			Unknown protein		
Niben101Scf05615g01003.1	AT2G26710.1	*-*-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09781g00010.1	sp|P0ABI1|CLPA_ECO57	*-**	ATP-dependent Clp protease ATP-binding subunit ClpA	IPR001270 (ClpA/B family), IPR001943 (UVR domain), IPR019489 (Clp ATPase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR028299 (ClpA/B, conserved site 2)	GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf03161g00006.1	sp|Q9S7H4|CM2_ARATH	*-**	Chorismate mutase 2	IPR008238 (Chorismate mutase, AroQ class, eukaryotic type)	GO:0004106 (chorismate mutase activity), GO:0009073 (aromatic amino acid family biosynthetic process), GO:0046417 (chorismate metabolic process)
Niben101Scf01785g04009.1	AT1G29370.1	***-	Kinase-related protein of unknown function (DUF1296) LENGTH=831	IPR009060 (UBA-like), IPR009719 (Protein of unknown function DUF1296, plant)	GO:0005515 (protein binding)
Niben101Scf05989g01008.1	sp|Q33DL3|CFI_TOBAC	****	Chalcone--flavonone isomerase	IPR016087 (Chalcone isomerase)	GO:0009813 (flavonoid biosynthetic process), GO:0016872 (intramolecular lyase activity), GO:0045430 (chalcone isomerase activity)
Niben101Scf14133g00002.1			Unknown protein		
Niben101Scf12017g00009.1	sp|Q9SIT5|CHX15_ARATH	*-**	Cation/H(+) antiporter 15	IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0016021 (integral component of membrane)
Niben101Scf05201g03008.1	AT2G26810.1	*-*-	Putative methyltransferase family protein LENGTH=256	IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	
Niben101Scf00136g03005.1	sp|Q1M0P5|METB_HELPX	***-	Cystathionine gamma-synthase	IPR000277 (Cys/Met metabolism, pyridoxal phosphate-dependent enzyme), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf09869g01021.1	sp|Q8YRZ2|ACSF3_NOSS1	****	Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 3	IPR003251 (Rubrerythrin), IPR008434 (Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase)	GO:0015979 (photosynthesis), GO:0015995 (chlorophyll biosynthetic process), GO:0016491 (oxidoreductase activity), GO:0046872 (metal ion binding), GO:0048529 (magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00980g02002.1	gb|AFN53464.1|	*-*-	maturase, partial (mitochondrion) [Roridula gorgonias]		
Niben101Scf00817g06003.1	AT3G26040.1	****	HXXXD-type acyl-transferase family protein LENGTH=442	IPR003480 (Transferase), IPR023213 (Chloramphenicol acetyltransferase-like domain)	GO:0016747 (transferase activity, transferring acyl groups other than amino-acyl groups)
Niben101Scf00854g06032.1	gb|AFN53464.1|	*-*-	maturase, partial (mitochondrion) [Roridula gorgonias]		
Niben101Scf02517g03002.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001368 (TNFR/NGFR cysteine-rich region), IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06093g00008.1	AT5G14105.1	*-*-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=76		
Niben101Scf00799g05010.1	sp|Q9LN71|RING1_ARATH	*-*-	E3 ubiquitin-protein ligase	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00576g01001.1	sp|Q28KF4|RS21_JANSC	-**-	30S ribosomal protein S21	IPR001911 (Ribosomal protein S21)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07466g01002.1	sp|Q9LD18|POT4_ARATH	****	Potassium transporter 4	IPR003855 (Potassium transporter)	GO:0015079 (potassium ion transmembrane transporter activity), GO:0016020 (membrane), GO:0071805 (potassium ion transmembrane transport)
Niben101Scf00225g05002.1	sp|Q869S5|DOKA_DICDI	*-**	Hybrid signal transduction protein dokA	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf03525g00003.1	sp|Q9ZV56|CCT1_ARATH	***-	Choline-phosphate cytidylyltransferase 1	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process)
Niben101Scf05154g01016.1	AT5G53040.1	*-*-	RWP-RK domain-containing protein LENGTH=256	IPR003035 (RWP-RK domain)	
Niben101Scf04375g12003.1	sp|P38659|PDIA4_RAT	*-**	Protein disulfide-isomerase A4	IPR012336 (Thioredoxin-like fold)	GO:0016853 (isomerase activity), GO:0045454 (cell redox homeostasis)
Niben101Scf03768g01004.1	sp|Q9FLU1|BIN4_ARATH	*-*-	DNA-binding protein BIN4		
Niben101Scf06439g02003.1	gb|ABB47928.2|	***-	expressed protein [Oryza sativa Japonica Group]		
Niben101Scf16106g00003.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02853g04010.1	AT5G63190.1	*-*-	MA3 domain-containing protein LENGTH=702		
Niben101Scf06919g00006.1	sp|P37277|PSAL_SYNY3	****	Photosystem I reaction center subunit XI	IPR003757 (Photosystem I PsaL, reaction centre subunit XI)	GO:0009522 (photosystem I), GO:0009538 (photosystem I reaction center), GO:0015979 (photosynthesis)
Niben101Scf01784g01014.1	sp|Q9Y6U7|RN215_HUMAN	--*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02827g02004.1			Unknown protein		
Niben101Scf00339g07002.1	sp|Q8XIS6|LEPA_CLOPE	***-	Elongation factor 4	IPR005225 (Small GTP-binding protein domain), IPR006297 (Elongation factor 4), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf22907g00009.1	gb|AAG50572.1|AC079280_3	*-*-	mutator-like transposase, putative [Arabidopsis thaliana]		
Niben101Scf07974g00004.1			Unknown protein		
Niben101Scf03634g00002.1	AT3G45400.1	*-*-	exostosin family protein LENGTH=475	IPR004263 (Exostosin-like)	
Niben101Scf06848g10014.1	sp|B1M201|RS9_METRJ	--*-	30S ribosomal protein S9	IPR000754 (Ribosomal protein S9), IPR014721 (Ribosomal protein S5 domain 2-type fold, subgroup)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf04754g03025.1	sp|Q0C5A1|KPRS_HYPNA	***-	Ribose-phosphate pyrophosphokinase	IPR029057 (Phosphoribosyltransferase-like)	GO:0009116 (nucleoside metabolic process)
Niben101Scf07382g01014.1			Unknown protein		
Niben101Scf02665g13002.1	AT5G01990.1	***-	Auxin efflux carrier family protein LENGTH=431	IPR004776 (Auxin efflux carrier)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf03693g03006.1	AT2G25737.1	***-	Sulfite exporter TauE/SafE family protein LENGTH=476	IPR002781 (Transmembrane protein TauE like)	GO:0016021 (integral component of membrane)
Niben101Scf04323g04019.1	sp|Q6YZA9|GL82_ORYSJ	***-	Germin-like protein 8-2	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf07655g01015.1	sp|Q2UVJ5|CCC1_ARATH	*-*-	Cation-chloride cotransporter 1		
Niben101Scf02001g01005.1	sp|Q54UK0|PLDA_DICDI	*-**	Phospholipase D A	IPR015679 (Phospholipase D family), IPR024632 (Phospholipase D, C-terminal)	GO:0003824 (catalytic activity), GO:0004630 (phospholipase D activity), GO:0005509 (calcium ion binding), GO:0005515 (protein binding), GO:0008152 (metabolic process), GO:0016020 (membrane), GO:0046470 (phosphatidylcholine metabolic process)
Niben101Scf04505g02021.1	sp|B4K8W7|PURA_DROMO	****	Adenylosuccinate synthetase	IPR001114 (Adenylosuccinate synthetase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004019 (adenylosuccinate synthase activity), GO:0005525 (GTP binding), GO:0006164 (purine nucleotide biosynthetic process)
Niben101Scf00918g04014.1	sp|Q96GG9|DCNL1_HUMAN	***-	DCN1-like protein 1	IPR009060 (UBA-like), IPR014764 (Defective-in-cullin neddylation protein)	GO:0005515 (protein binding)
Niben101Scf02408g03002.1	gb|KEH39494.1|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf00793g07009.1	sp|C8V8H4|DED1_EMENI	*-**	ATP-dependent RNA helicase ded1	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Ctg12398g00004.1	AT5G02170.1	***-	Transmembrane amino acid transporter family protein LENGTH=526	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf04103g11006.1	sp|A4QKU4|CYF_CRUWA	***-	Apocytochrome f	IPR002325 (Cytochrome f), IPR004282 (Chloroplast envelope membrane protein, CemA), IPR024058 (Cytochrome f  transmembrane anchor), IPR024094 (Cytochrome f large domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0031361 (integral component of thylakoid membrane)
Niben101Scf00090g13017.1	AT4G33350.1	***-	Tic22-like family protein LENGTH=268	IPR007378 (Tic22-like)	
Niben101Scf18853g00002.1	AT5G40240.2	****	nodulin MtN21 /EamA-like transporter family protein LENGTH=382	IPR000620 (EamA domain), IPR030184 (WAT1-related protein)	GO:0016020 (membrane), GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf15972g02028.1			Unknown protein		
Niben101Scf02955g05014.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf10241g00004.1	sp|Q2HIV9|BH035_ARATH	*-*-	Transcription factor bHLH35	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf15744g00003.1	sp|Q9SM50|HY5_SOLLC	****	Transcription factor HY5	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf02122g02019.1	AT1G36370.1	****	serine hydroxymethyltransferase 7 LENGTH=598	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase), IPR019775 (WD40 repeat, conserved site)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf00219g02002.1	AT1G47420.1	*-*-	succinate dehydrogenase 5 LENGTH=257	IPR025397 (Protein of unknown function DUF4370)	
Niben101Scf06359g00006.1	sp|O80642|PGTB1_ARATH	***-	Geranylgeranyl transferase type-1 subunit beta	IPR008930 (Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid)	GO:0003824 (catalytic activity)
Niben101Scf11360g00010.1			Unknown protein		
Niben101Scf01718g02010.1	sp|Q9LQR8|PSD3B_ARATH	****	26S proteasome non-ATPase regulatory subunit 3 homolog B	IPR000717 (Proteasome component (PCI) domain), IPR013143 (PCI/PINT associated module), IPR013586 (26S proteasome regulatory subunit, C-terminal)	GO:0000502 (proteasome complex), GO:0005515 (protein binding), GO:0030234 (enzyme regulator activity), GO:0042176 (regulation of protein catabolic process)
Niben101Scf00307g01028.1	gb|ABP96804.1|	*-*-	receptor-like protein kinase [Capsicum annuum]		
Niben101Scf03236g03003.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf05528g01010.1	AT5G56140.1	****	RNA-binding KH domain-containing protein LENGTH=315	IPR004087 (K Homology domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding)
Niben101Scf06090g00010.1	sp|Q9C9A6|PUB10_ARATH	***-	U-box domain-containing protein 10	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR016024 (Armadillo-type fold)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding), GO:0016567 (protein ubiquitination)
Niben101Scf01213g00015.1	ref|XP_010099869.1|	--*-	Histone-lysine N-methyltransferase ATX1 [Morus notabilis] gb|EXB80746.1| Histone-lysine N-methyltransferase ATX1 [Morus notabilis]		
Niben101Scf09658g00029.1	sp|Q9FFI5|NAC86_ARATH	*-*-	NAC domain-containing protein 86	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01267g04015.1			Unknown protein		
Niben101Scf10737g01013.1	sp|Q54B27|EXOC6_DICDI	*-**	Exocyst complex component 6	IPR007225 (Exocyst complex subunit Sec15-like)	GO:0000145 (exocyst), GO:0006904 (vesicle docking involved in exocytosis)
Niben101Scf01436g02009.1	emb|CDY46615.1|	***-	BnaA09g27420D [Brassica napus]		
Niben101Scf05761g01010.1	sp|Q54KZ8|EIF3M_DICDI	****	Eukaryotic translation initiation factor 3 subunit M	IPR000717 (Proteasome component (PCI) domain), IPR027528 (Eukaryotic translation initiation factor 3 subunit M)	GO:0003743 (translation initiation factor activity), GO:0005515 (protein binding), GO:0005737 (cytoplasm), GO:0005852 (eukaryotic translation initiation factor 3 complex)
Niben101Scf12858g01025.1	sp|Q9LN01|PPR21_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf01876g01009.1	AT3G62900.1	*-*-	CW-type Zinc Finger LENGTH=1465		
Niben101Scf04006g01022.1	sp|Q28141|DHX9_BOVIN	*-**	ATP-dependent RNA helicase A	IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf03019g05003.1			Unknown protein		
Niben101Scf05767g05005.1	sp|Q09X27|RPOC2_MORIN	*-*-	DNA-directed RNA polymerase subunit beta''		
Niben101Scf13391g01014.1	emb|CDX84591.1|	***-	BnaA03g16390D [Brassica napus]		
Niben101Scf07984g04002.1	AT4G34980.1	****	subtilisin-like serine protease 2 LENGTH=764	IPR015500 (Peptidase S8, subtilisin-related), IPR023828 (Peptidase S8, subtilisin, Ser-active site)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02553g02002.1	AT3G48730.1	****	glutamate-1-semialdehyde 2,1-aminomutase 2 LENGTH=472	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding), GO:0033014 (tetrapyrrole biosynthetic process), GO:0042286 (glutamate-1-semialdehyde 2,1-aminomutase activity)
Niben101Scf02383g00003.1	sp|P50346|RLA0_SOYBN	***-	60S acidic ribosomal protein P0	IPR001790 (Ribosomal protein L10/acidic P0)	GO:0005622 (intracellular), GO:0042254 (ribosome biogenesis)
Niben101Scf09760g00011.1	sp|Q91W78|USB1_MOUSE	****	U6 snRNA phosphodiesterase	IPR027521 (U6 snRNA phosphodiesterase Usb1)	GO:0004518 (nuclease activity), GO:0034477 (U6 snRNA 3'-end processing)
Niben101Scf07188g02025.1	sp|Q27RY7|YCF2_SOLTU	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf01514g03006.1	sp|Q8LG95|PP332_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf00161g01007.1	AT1G73480.1	***-	alpha/beta-Hydrolases superfamily protein LENGTH=463	IPR022742 (Putative lysophospholipase), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf00291g02055.1			Unknown protein		
Niben101Scf06466g00002.1			Unknown protein	IPR003882 (Pistil-specific extensin-like protein)	GO:0005199 (structural constituent of cell wall)
Niben101Scf01025g13011.1	sp|Q0IQU1|LAC22_ORYSJ	*-*-	Laccase-22	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding)
Niben101Ctg00192g00001.1	ref|XP_003606363.1|	*-*-	Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula] gb|AES88560.1| zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula]	IPR002035 (von Willebrand factor, type A)	
Niben101Scf00734g00002.1	sp|O43290|SNUT1_HUMAN	*-*-	U4/U6.U5 tri-snRNP-associated protein 1	IPR005011 (SART-1 protein)	
Niben101Scf05202g00005.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf09015g00001.1	sp|A1DP85|NM111_NEOFI	*-**	Pro-apoptotic serine protease nma111	IPR001478 (PDZ domain)	GO:0005515 (protein binding)
Niben101Scf00990g02016.1	sp|Q9FJV0|M2K6_ARATH	*-*-	Mitogen-activated protein kinase kinase 6		
Niben101Scf00505g01004.1	AT3G06400.3	****	chromatin-remodeling protein 11 LENGTH=1057	IPR000330 (SNF2-related), IPR001650 (Helicase, C-terminal), IPR009057 (Homeodomain-like), IPR015194 (ISWI, HAND domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029915 (ISWI family)	GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005524 (ATP binding), GO:0005634 (nucleus), GO:0006338 (chromatin remodeling), GO:0016589 (NURF complex), GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides), GO:0016887 (ATPase activity), GO:0031491 (nucleosome binding), GO:0043044 (ATP-dependent chromatin remodeling)
Niben101Scf03273g01001.1	sp|A2YQK9|MAD26_ORYSI	****	MADS-box transcription factor 26	IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf02090g06011.1	AT1G71810.1	****	Protein kinase superfamily protein LENGTH=692	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02786g00005.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04664g04005.1	sp|Q54TL0|KIF7_DICDI	*-**	Kinesin-related protein 7	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf09127g01001.1	sp|Q92376|KLP1_SCHPO	*-**	Kinesin-like protein 1	IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf04711g00015.1	sp|P51659|DHB4_HUMAN	*-*-	Peroxisomal multifunctional enzyme type 2	IPR029069 (HotDog domain)	
Niben101Scf05308g00002.1	sp|Q9LQ12|4CLL1_ARATH	***-	4-coumarate--CoA ligase-like 1	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf01689g03016.1	sp|Q9LZQ1|TBL6_ARATH	*-*-	Protein trichome birefringence-like 6	IPR026057 (PC-Esterase)	
Niben101Scf05329g03006.1	sp|Q9NZM5|GSCR2_HUMAN	--*-	Glioma tumor suppressor candidate region gene 2 protein	IPR011687 (P60-like)	
Niben101Scf01438g09005.1			Unknown protein		
Niben101Scf01526g12008.1	AT1G32740.1	****	SBP (S-ribonuclease binding protein) family protein LENGTH=312	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR017066 (S-ribonuclease binding protein, SBP1, pollen)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf03143g11005.1	ref|WP_026720130.1|	*-*-	histidine kinase [Fischerella sp. PCC 9431]	IPR003594 (Histidine kinase-like ATPase, C-terminal domain)	
Niben101Scf00712g13012.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf12045g01001.1	sp|Q6DG03|DMTF1_DANRE	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf10169g01005.1	sp|F4IH21|TBL33_ARATH	*-*-	Protein trichome birefringence-like 33	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf01002g02003.1	ref|XP_007021651.1|	-**-	Actin cyt pan1, putative isoform 2 [Theobroma cacao]		
Niben101Scf02062g08002.1	sp|Q97BF6|ATKB_THEVO	*-*-	Potassium-transporting ATPase B chain	IPR008250 (P-type ATPase, A  domain)	GO:0000166 (nucleotide binding), GO:0046872 (metal ion binding)
Niben101Scf00906g00010.1	sp|Q9ZW88|FBL34_ARATH	*-*-	F-box/LRR-repeat protein		
Niben101Scf09321g02028.1	sp|O59784|MDE7_SCHPO	*-**	RNA-binding protein mde7	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf07566g00008.1	sp|Q6I544|GL52_ORYSJ	***-	Germin-like protein 5-1	IPR001929 (Germin)	GO:0030145 (manganese ion binding), GO:0045735 (nutrient reservoir activity)
Niben101Scf01734g01050.1	gb|KEH18034.1|	*-*-	alpha/beta fold hydrolase [Medicago truncatula]	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf06654g02004.1	sp|Q9C5E5|DGK5_ARATH	****	Diacylglycerol kinase 5	IPR016064 (ATP-NAD kinase-like domain), IPR016961 (Diacylglycerol kinase, plant)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf01528g01002.1	AT3G60690.1	***-	SAUR-like auxin-responsive protein family LENGTH=170	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf03052g00005.1	sp|Q9T0D6|PP306_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02423g02012.1	gb|AED89984.1|	*-*-	PSL1a [Solanum chacoense x Solanum tuberosum]	IPR026721 (Transmembrane protein 18), IPR029060 (PIN domain-like)	
Niben101Scf02299g01011.1	AT1G30360.1	***-	Early-responsive to dehydration stress protein (ERD4) LENGTH=724	IPR003864 (Domain of unknown function DUF221), IPR027815 (Domain of unknown function DUF4463)	GO:0016020 (membrane)
Niben101Scf01191g01027.1	AT1G54940.1	*-*-	plant glycogenin-like starch initiation protein 4 LENGTH=557	IPR029044 (Nucleotide-diphospho-sugar transferases)	
Niben101Scf01958g05004.1	sp|Q07346|DCE_PETHY	***-	Glutamate decarboxylase	IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0016831 (carboxy-lyase activity), GO:0019752 (carboxylic acid metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf22360g00001.1			Unknown protein		
Niben101Scf01084g03003.1			Unknown protein	IPR004297 (Systemic acquired resistance protein SAR)	
Niben101Scf02077g08008.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf02622g04001.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR001611 (Leucine-rich repeat), IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005515 (protein binding), GO:0043531 (ADP binding)
Niben101Scf00157g00021.1	sp|Q5RJU0|SNF8_XENTR	***-	Vacuolar-sorting protein SNF8	IPR007286 (EAP30), IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf03479g05039.1	sp|Q55GA4|CDC45_DICDI	*-*-	Cell division control protein 45 homolog	IPR003874 (CDC45 family)	GO:0006270 (DNA replication initiation)
Niben101Scf04639g15008.1	sp|Q5BG98|MCR1_EMENI	****	NADH-cytochrome b5 reductase 2	IPR001433 (Oxidoreductase FAD/NAD(P)-binding), IPR001834 (NADH:cytochrome b5 reductase (CBR)), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf10193g00001.1	ref|XP_007033568.1|	*-*-	Mitochondrial Rho GTPase 2 isoform 1 [Theobroma cacao] gb|EOY04494.1| Mitochondrial Rho GTPase 2 isoform 1 [Theobroma cacao]		
Niben101Scf04717g00006.1	sp|Q9ZMH1|CLPB_HELPJ	*-*-	Chaperone protein ClpB	IPR004176 (Clp, N-terminal), IPR023150 (Double Clp-N motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0019538 (protein metabolic process)
Niben101Scf01695g01018.1	AT3G03620.1	*-*-	MATE efflux family protein LENGTH=500	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03147g02009.1	AT3G53940.1	***-	Mitochondrial substrate carrier family protein LENGTH=365	IPR002067 (Mitochondrial carrier protein), IPR023395 (Mitochondrial carrier domain)	GO:0055085 (transmembrane transport)
Niben101Scf02471g00001.1	emb|CAH67252.1|	***-	OSIGBa0101C23.4 [Oryza sativa Indica Group]	IPR011038 (Calycin-like), IPR022017 (Domain of unknown function DUF3598)	
Niben101Scf05822g04012.1	ref|XP_002531819.1|	****	calcium binding protein/cast, putative [Ricinus communis] gb|EEF30576.1| calcium binding protein/cast, putative [Ricinus communis]	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf06376g05021.1	tpe|CAD29861.1|	--*-	TPA: putative basic leucine zipper transcription factor [Arabidopsis thaliana]		
Niben101Scf00721g00010.1	AT1G48480.1	****	receptor-like kinase 1 LENGTH=655	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03066g00020.1	sp|Q9SGH2|MBD9_ARATH	****	Methyl-CpG-binding domain-containing protein 9	IPR001487 (Bromodomain), IPR003888 (FY-rich, N-terminal), IPR003889 (FY-rich, C-terminal), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR018501 (DDT domain superfamily), IPR028942 (WHIM1 domain)	GO:0005515 (protein binding), GO:0005634 (nucleus), GO:0008270 (zinc ion binding)
Niben101Scf03739g03001.1			Unknown protein		
Niben101Scf00063g06018.1			Unknown protein		
Niben101Scf01111g01002.1	sp|Q9LN94|EXPA7_ARATH	***-	Expansin-A7	IPR007118 (Expansin/Lol pI)	GO:0005576 (extracellular region), GO:0009664 (plant-type cell wall organization)
Niben101Scf02854g11002.1	gb|KEH28241.1|	*-*-	GASA/GAST/Snakin [Medicago truncatula]		
Niben101Scf03431g00079.1	emb|CDY45486.1|	***-	BnaCnng12450D [Brassica napus]		
Niben101Scf02044g06006.1	sp|Q1Q962|RECA_PSYCK	***-	Protein RecA	IPR013765 (DNA recombination and repair protein RecA), IPR023400 (DNA recombination and repair protein RecA, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0003697 (single-stranded DNA binding), GO:0005524 (ATP binding), GO:0006259 (DNA metabolic process), GO:0006281 (DNA repair), GO:0008094 (DNA-dependent ATPase activity), GO:0009432 (SOS response)
Niben101Scf00225g07017.1	sp|P62191|PRS4_HUMAN	--*-	26S protease regulatory subunit 4	IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf03113g03001.1	sp|B0CQN9|TVP23_LACBS	****	Golgi apparatus membrane protein TVP23	IPR008564 (Protein of unknown function DUF846, eukaryotic)	GO:0016021 (integral component of membrane)
Niben101Scf02366g06002.1	ref|WP_002802095.1|	*-*-	membrane protein [Microcystis aerugin [Microcystis aeruginosa PCC 9701]	IPR021275 (Protein of unknown function DUF2854)	
Niben101Scf05319g03001.1	emb|CDY05239.1|	***-	BnaC05g45640D [Brassica napus]		
Niben101Scf16997g00001.1	gb|KGN57146.1|	--*-	Nutrient reservoir [Cucumis sativus]		
Niben101Scf11225g00013.1	emb|CDY12451.1|	--*-	BnaC08g09400D [Brassica napus]		
Niben101Scf02353g01008.1	AT1G17820.1	***-	Putative integral membrane protein conserved region (DUF2404) LENGTH=803		
Niben101Scf03251g00008.1	sp|Q40831|TBA1_PELFA	***-	Tubulin alpha-1 chain	IPR000217 (Tubulin), IPR023123 (Tubulin, C-terminal)	GO:0003924 (GTPase activity), GO:0005200 (structural constituent of cytoskeleton), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0006184 (GTP catabolic process), GO:0007017 (microtubule-based process), GO:0043234 (protein complex), GO:0051258 (protein polymerization)
Niben101Scf07437g05009.1	AT1G59940.1	***-	response regulator 3 LENGTH=231	IPR011006 (CheY-like superfamily)	GO:0000160 (phosphorelay signal transduction system)
Niben101Scf00555g00015.1	sp|P58667|ISPG_CLOPE	****	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	IPR004588 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type)	GO:0016114 (terpenoid biosynthetic process), GO:0046429 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00905g12002.1	sp|Q06394|ML146_PAPSO	-**-	Major latex protein 146	IPR000916 (Bet v I domain), IPR023393 (START-like domain)	GO:0006952 (defense response), GO:0009607 (response to biotic stimulus)
Niben101Scf11154g00025.1	sp|Q0WPR4|SCP34_ARATH	*-**	Serine carboxypeptidase-like 34	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf05438g04002.1	gb|KEH36884.1|	***-	F-box plant-like protein, putative [Medicago truncatula]	IPR027949 (Petal formation-expressed)	
Niben101Scf04847g02001.1	sp|Q9W4D2|RNP4F_DROME	--**	RNA-binding protein 4F	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf12502g00008.1	sp|Q9SVF3|HPP5_ARATH	--*-	Heptahelical transmembrane protein 5		
Niben101Scf10627g01006.1	ref|XP_002516141.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF46143.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01308g03016.1	sp|A5K168|SEY1_PLAVS	--*-	Protein SEY1 homolog		
Niben101Scf00062g01023.1	sp|B7H597|IOLA_BACC4	****	Methylmalonate semialdehyde dehydrogenase [acylating]	IPR010061 (Methylmalonate-semialdehyde dehydrogenase), IPR016161 (Aldehyde/histidinol dehydrogenase)	GO:0004491 (methylmalonate-semialdehyde dehydrogenase (acylating) activity), GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00574g11004.1	sp|B2IFY8|RL19_BEII9	*-*-	50S ribosomal protein L19	IPR001857 (Ribosomal protein L19), IPR008991 (Translation protein SH3-like domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03018g07002.1	sp|Q9LHJ8|SAP5_ARATH	****	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	IPR000058 (Zinc finger, AN1-type), IPR002653 (Zinc finger, A20-type)	GO:0003677 (DNA binding), GO:0008270 (zinc ion binding)
Niben101Scf11125g00007.1	gb|KEH41789.1|	*-*-	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]		
Niben101Scf03710g07016.1	sp|Q0WPW4|ACCO5_ARATH	***-	1-aminocyclopropane-1-carboxylate oxidase 5	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf11188g00006.1	AT1G48910.1	****	Flavin-containing monooxygenase family protein LENGTH=383	IPR013027 (FAD-dependent pyridine nucleotide-disulphide oxidoreductase), IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01326g10012.1	sp|P40973|PLY_LILLO	****	Pectate lyase	IPR007524 (Pectate lyase, N-terminal), IPR011050 (Pectin lyase fold/virulence factor), IPR018082 (AmbAllergen)	GO:0030570 (pectate lyase activity)
Niben101Scf01740g16002.1	sp|Q41638|XTHA_PHAAN	****	Xyloglucan endotransglucosylase/hydrolase protein A	IPR008264 (Beta-glucanase), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR016455 (Xyloglucan endotransglucosylase/hydrolase)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005618 (cell wall), GO:0005975 (carbohydrate metabolic process), GO:0006073 (cellular glucan metabolic process), GO:0016762 (xyloglucan:xyloglucosyl transferase activity), GO:0048046 (apoplast)
Niben101Scf12528g00004.1	sp|P53167|PUS2_YEAST	--**	tRNA pseudouridine(27/28) synthase	IPR020095 (Pseudouridine synthase I, TruA, C-terminal)	GO:0001522 (pseudouridine synthesis), GO:0003723 (RNA binding), GO:0009451 (RNA modification), GO:0009982 (pseudouridine synthase activity)
Niben101Scf02560g00006.1	emb|CDX75830.1|	*-*-	BnaC03g39130D [Brassica napus]		
Niben101Scf12127g00006.1	sp|Q1QUF2|RSMC_CHRSD	--**	Ribosomal RNA small subunit methyltransferase C	IPR004557 (Eukaryotic/archaeal PrmC-related), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003676 (nucleic acid binding), GO:0008168 (methyltransferase activity), GO:0008276 (protein methyltransferase activity), GO:0032259 (methylation)
Niben101Scf05342g02002.1	AT5G63400.1	****	adenylate kinase 1 LENGTH=246	IPR000850 (Adenylate kinase/UMP-CMP kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004017 (adenylate kinase activity), GO:0005524 (ATP binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0016776 (phosphotransferase activity, phosphate group as acceptor), GO:0019205 (nucleobase-containing compound kinase activity)
Niben101Scf21735g00007.1	sp|C1KVB9|DNAJ_LISMC	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain), IPR024593 (Domain of unknown function DUF3444)	
Niben101Scf05680g00025.1	sp|E7F6F9|KLHL3_DANRE	--*-	Kelch-like protein 3	IPR015916 (Galactose oxidase, beta-propeller)	
Niben101Scf01313g01005.1	sp|Q5DTZ6|RN150_MOUSE	--*-	RING finger protein 150	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf04003g04002.1	sp|O48653|DPOLA_ORYSJ	****	DNA polymerase alpha catalytic subunit	IPR006172 (DNA-directed DNA polymerase, family B), IPR023211 (DNA polymerase, palm domain), IPR024647 (DNA polymerase alpha catalytic subunit, N-terminal domain)	GO:0000166 (nucleotide binding), GO:0001882 (nucleoside binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003887 (DNA-directed DNA polymerase activity), GO:0006260 (DNA replication), GO:0006270 (DNA replication initiation)
Niben101Scf01166g18016.1	sp|Q09466|WHT3_CAEEL	****	ABC transporter ATP-binding protein/permease wht-3	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf04727g01003.1	sp|Q4L739|KPYK_STAHJ	--**	Pyruvate kinase	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf03070g06001.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01520g07011.1	sp|B3H4F1|SP1L1_ARATH	***-	Protein SPIRAL1-like 1		
Niben101Scf01834g01024.1	sp|Q9D7S9|CHMP5_MOUSE	***-	Charged multivesicular body protein 5	IPR005024 (Snf7 family)	GO:0007034 (vacuolar transport)
Niben101Scf08724g03009.1	sp|P81392|MYB06_ANTMA	*-*-	Myb-related protein 306	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf01171g03016.1	sp|P50250|SAHH_PLAF7	****	Adenosylhomocysteinase	IPR000043 (Adenosylhomocysteinase), IPR016040 (NAD(P)-binding domain)	GO:0004013 (adenosylhomocysteinase activity), GO:0006730 (one-carbon metabolic process)
Niben101Scf02381g04022.1	sp|P26573|RBS8_NICPL	***-	Ribulose bisphosphate carboxylase small chain 8B, chloroplastic	IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain)	
Niben101Scf07951g02011.1	sp|Q03461|NLTP2_TOBAC	****	Non-specific lipid-transfer protein 2	IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)	GO:0006869 (lipid transport), GO:0008289 (lipid binding)
Niben101Scf01032g02008.1	sp|Q96RS0|TGS1_HUMAN	*-*-	Trimethylguanosine synthase	IPR019012 (RNA cap guanine-N2 methyltransferase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0001510 (RNA methylation), GO:0008168 (methyltransferase activity), GO:0009452 (7-methylguanosine RNA capping)
Niben101Scf01376g04028.1	dbj|BAJ72665.1|	*-*-	ethylene response factor 6a [Nicotiana tabacum]		
Niben101Scf02716g00010.1			Unknown protein		
Niben101Scf02044g05022.1	AT5G64330.1	*-*-	Phototropic-responsive NPH3 family protein LENGTH=746	IPR027356 (NPH3 domain), IPR029959 (Root phototropism protein 3-like)	GO:0016567 (protein ubiquitination)
Niben101Scf01911g03001.1	AT5G60680.1	***-	Protein of unknown function, DUF584 LENGTH=163	IPR007608 (Senescence regulator S40)	
Niben101Scf33760g00001.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf01500g04007.1	gb|AES90874.2|	*-*-	2OG-Fe(II) oxygenase family oxidoreductase [Medicago truncatula]	IPR027443 (Isopenicillin N synthase-like)	
Niben101Scf04653g00001.1	sp|P29516|TBB8_ARATH	*-**	Tubulin beta-8 chain	IPR000217 (Tubulin)	GO:0000930 (gamma-tubulin complex), GO:0005525 (GTP binding), GO:0005874 (microtubule), GO:0007017 (microtubule-based process), GO:0007020 (microtubule nucleation), GO:0031122 (cytoplasmic microtubule organization)
Niben101Scf00989g00002.1	tpg|DAA44478.1|	*-*-	TPA: hypothetical protein ZEAMMB73_146057 [Zea mays]	IPR024224 (DENND6)	
Niben101Scf05231g02019.1	sp|Q8LGG8|USPAL_ARATH	****	Universal stress protein A-like protein	IPR006015 (Universal stress protein A)	GO:0006950 (response to stress)
Niben101Scf08515g00020.1	sp|P0DI32|CASP1_TARKO	***-	Casparian strip membrane protein 1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf01073g03002.1			Unknown protein	IPR005508 (B3 domain-containing protein)	
Niben101Scf03786g00008.1	sp|Q9SJB4|GDL34_ARATH	***-	GDSL esterase/lipase	IPR013830 (SGNH hydrolase-type esterase domain)	GO:0006629 (lipid metabolic process), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf03679g01007.1	sp|Q3UF64|RNFT2_MOUSE	--*-	RING finger and transmembrane domain-containing protein 2		
Niben101Scf00885g05001.1	sp|Q6GKC1|OAT1_STAAR	***-	Ornithine aminotransferase 1	IPR005814 (Aminotransferase class-III), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0008483 (transaminase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01454g06001.1	sp|O49858|C82A3_SOYBN	*-*-	Cytochrome P450 82A3	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf06569g01013.1	ref|NP_001052968.1|	***-	product [Oryza sativa Japonica Group]	IPR008976 (Lipase/lipooxygenase, PLAT/LH2)	GO:0005515 (protein binding)
Niben101Scf03432g01014.1	sp|P93263|METE_MESCR	--*-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase		
Niben101Scf08680g02018.1	AT5G39380.1	*-**	Plant calmodulin-binding protein-related LENGTH=507	IPR012417 (Calmodulin-binding domain, plant)	GO:0005516 (calmodulin binding)
Niben101Scf05060g04016.1	gb|KEH19728.1|	*-*-	DUF1666 family protein [Medicago truncatula]	IPR008195 (Ribosomal protein L34Ae), IPR012870 (Protein of unknown function DUF1666)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf00229g03008.1	AT2G37650.1	***-	GRAS family transcription factor LENGTH=718	IPR005202 (Transcription factor GRAS)	
Niben101Scf23892g01002.1	AT4G08685.1	***-	Pollen Ole e 1 allergen and extensin family protein LENGTH=159	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf00228g02006.1	sp|Q94BT2|AIR12_ARATH	***-	Auxin-induced in root cultures protein 12	IPR005018 (DOMON domain)	
Niben101Scf04114g02046.1	sp|Q07060|ATP9_PETSP	*-**	ATP synthase subunit 9, mitochondrial	IPR000454 (ATPase, F0 complex, subunit C), IPR002379 (V-ATPase proteolipid subunit C-like domain)	GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport), GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033177 (proton-transporting two-sector ATPase complex, proton-transporting domain), GO:0045263 (proton-transporting ATP synthase complex, coupling factor F(o))
Niben101Scf00206g01033.1	ref|XP_007024431.1|	*-*-	Dentin sialoph -related, putative isoform 1 [Theobroma cacao]	IPR010844 (Occludin/RNA polymerase II elongation factor, ELL domain)	
Niben101Scf02232g00003.1	sp|Q7U3B6|MRAY_SYNPX	*-**	Phospho-N-acetylmuramoyl-pentapeptide-transferase	IPR000715 (Glycosyl transferase, family 4)	GO:0008963 (phospho-N-acetylmuramoyl-pentapeptide-transferase activity), GO:0016021 (integral component of membrane)
Niben101Scf04797g00004.1			Unknown protein		
Niben101Scf01993g05015.1	sp|Q9WTL2|RAB25_MOUSE	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf01071g02001.1	sp|Q9LHP4|RCH2_ARATH	****	Receptor-like protein kinase 2	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf11480g01006.1	sp|Q9FP29|KNOS1_ORYSJ	***-	Homeobox protein knotted-1-like 1	IPR005539 (ELK), IPR005540 (KNOX1), IPR005541 (KNOX2), IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf18395g00001.1	gb|AIW50758.1|	*-*-	aberrant panicle organization 1 protein, partial [Andropogon gayanus]	IPR011043 (Galactose oxidase/kelch, beta-propeller)	
Niben101Scf13601g00043.1	sp|E7EY42|PTSS2_DANRE	****	Phosphatidylserine synthase 2	IPR004277 (Phosphatidyl serine synthase)	GO:0006659 (phosphatidylserine biosynthetic process)
Niben101Scf06084g01005.1	gb|AEB34870.1|	*-*-	PBS1 [Helianthus tuberosus]		
Niben101Scf12855g00010.1	sp|Q5KQN0|CAX2_ORYSJ	*-*-	Vacuolar cation/proton exchanger 2	IPR004837 (Sodium/calcium exchanger membrane region)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf02543g03005.1	sp|P42744|ULA1_ARATH	***-	NEDD8-activating enzyme E1 regulatory subunit	IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity)
Niben101Scf02805g02019.1	sp|Q6USK2|CERK_ARATH	****	Ceramide kinase	IPR001206 (Diacylglycerol kinase, catalytic domain), IPR016064 (ATP-NAD kinase-like domain)	GO:0003951 (NAD+ kinase activity), GO:0004143 (diacylglycerol kinase activity), GO:0007205 (protein kinase C-activating G-protein coupled receptor signaling pathway), GO:0008152 (metabolic process)
Niben101Scf14394g01020.1	sp|P27541|HSP70_BRUMA	***-	Heat shock 70 kDa protein	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf00381g09001.1	AT4G38250.1	***-	Transmembrane amino acid transporter family protein LENGTH=436	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf01983g04019.1	ref|XP_007022019.1|	***-	Gb:AAD10662.1, putative isoform 5 [Theobroma cacao] gb|EOY13544.1| Gb:AAD10662.1, putative isoform 5 [Theobroma cacao]		
Niben101Scf08133g00002.1	sp|O48766|GUN11_ARATH	***-	Endoglucanase 11	IPR001701 (Glycoside hydrolase, family 9), IPR008928 (Six-hairpin glycosidase-like)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07849g01001.1	sp|Q42430|ZFP1_WHEAT	*-*-	Zinc finger protein 1	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf01319g01006.1	emb|CDX73190.1|	***-	BnaC06g36380D [Brassica napus]		
Niben101Scf04763g02020.1	AT5G39410.1	***-	Saccharopine dehydrogenase LENGTH=454	IPR005097 (Saccharopine dehydrogenase / Homospermidine synthase)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf05566g04006.1	AT5G10460.1	*-*-	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=306		
Niben101Scf01073g02006.1	sp|Q9FT74|RQL1_ARATH	*-**	ATP-dependent DNA helicase Q-like 1	IPR001650 (Helicase, C-terminal), IPR002464 (DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding), GO:0008026 (ATP-dependent helicase activity)
Niben101Scf08441g00014.1	gb|ABN09044.1|	****	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0004523 (RNA-DNA hybrid ribonuclease activity)
Niben101Scf04375g08004.1	sp|P41988|TCPA_CAEEL	***-	T-complex protein 1 subunit alpha	IPR002423 (Chaperonin Cpn60/TCP-1), IPR027409 (GroEL-like apical domain), IPR027410 (TCP-1-like chaperonin intermediate domain), IPR027413 (GroEL-like equatorial domain)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0044267 (cellular protein metabolic process), GO:0051082 (unfolded protein binding)
Niben101Scf05341g04006.1	sp|Q9FT54|GTE6_ARATH	--*-	Transcription factor GTE6	IPR027353 (NET domain)	
Niben101Scf00704g04024.1	sp|Q33BV3|YCF2_NICTO	*-*-	Protein Ycf2	IPR008543 (Uncharacterised protein family Ycf2)	GO:0005524 (ATP binding), GO:0009507 (chloroplast)
Niben101Scf07042g01006.1	AT5G57010.1	***-	calmodulin-binding family protein LENGTH=495		
Niben101Scf08526g02006.1	sp|Q9SI37|WRKY1_ARATH	*-**	WRKY transcription factor 1	IPR003657 (DNA-binding WRKY)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf05541g01006.1	AT4G25660.1	***-	PPPDE putative thiol peptidase family protein LENGTH=255	IPR008580 (PPPDE putative peptidase domain)	
Niben101Scf10442g00011.1	sp|A6MM90|NU6C_BUXMI	*-**	NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic	IPR001457 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 6), IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02039g00005.1	AT1G13810.1	***-	Restriction endonuclease, type II-like superfamily protein LENGTH=303	IPR011335 (Restriction endonuclease  type II-like)	GO:0003677 (DNA binding), GO:0004518 (nuclease activity)
Niben101Scf02662g00003.1	gb|AAS07116.1|	***-	expressed protein [Oryza sativa Japonica Group]	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf07163g00011.1	AT5G14760.1	*-*-	L-aspartate oxidase LENGTH=651	IPR003953 (FAD binding domain)	
Niben101Scf04950g01007.1	AT2G22560.1	*-*-	Kinase interacting (KIP1-like) family protein LENGTH=947		
Niben101Scf02816g13005.1	dbj|BAB32952.1|	*-*-	COP1-interacting protein 4.1 [Arabidopsis thaliana]		
Niben101Scf08758g00012.1	sp|Q9SIT5|CHX15_ARATH	****	Cation/H(+) antiporter 15	IPR006153 (Cation/H+ exchanger), IPR030153 (Cation/H(+) exchanger, plant)	GO:0005451 (monovalent cation:proton antiporter activity), GO:0006812 (cation transport), GO:0006813 (potassium ion transport), GO:0006814 (sodium ion transport), GO:0015299 (solute:proton antiporter activity), GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf00748g01005.1	AT2G26710.1	***-	Cytochrome P450 superfamily protein LENGTH=520	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf13710g03011.1	sp|P48368|CRTE_CYAPA	***-	Geranylgeranyl diphosphate synthase	IPR017446 (Polyprenyl synthetase-related)	GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf00180g05001.1	emb|CDY03795.1|	***-	BnaC01g29120D [Brassica napus]		
Niben101Scf02895g02003.1	emb|CDY60739.1|	***-	BnaA07g35980D [Brassica napus]	IPR021899 (Protein of unknown function DUF3511)	
Niben101Scf00419g00017.1	AT5G12950.1	*-*-	Putative glycosyl hydrolase of unknown function (DUF1680) LENGTH=861		
Niben101Scf08675g00006.1	sp|O14972|DSCR3_HUMAN	***-	Down syndrome critical region protein 3	IPR028934 (Vacuolar protein sorting protein 26 related)	
Niben101Scf11444g00005.1	sp|Q93ZD7|MRS24_ARATH	****	Magnesium transporter MRS2-4	IPR002523 (Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB), IPR026573 (Magnesium transporter MRS2/LPE10)	GO:0015095 (magnesium ion transmembrane transporter activity), GO:0015693 (magnesium ion transport), GO:0016020 (membrane), GO:0030001 (metal ion transport), GO:0046873 (metal ion transmembrane transporter activity), GO:0055085 (transmembrane transport)
Niben101Scf17626g00002.1	sp|Q93YN0|SCO2_ARATH	***-	Protein disulfide-isomerase SCO2		
Niben101Scf05688g00006.1	sp|Q96JB2|COG3_HUMAN	--*-	Conserved oligomeric Golgi complex subunit 3		
Niben101Scf06033g00002.1	sp|P14735|IDE_HUMAN	*-*-	Insulin-degrading enzyme	IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like)	GO:0003824 (catalytic activity), GO:0046872 (metal ion binding)
Niben101Scf00146g02010.1	sp|B8DD12|RSMG_LISMH	****	Ribosomal RNA small subunit methyltransferase G	IPR003682 (rRNA small subunit methyltransferase G), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0005737 (cytoplasm), GO:0006364 (rRNA processing), GO:0008649 (rRNA methyltransferase activity)
Niben101Scf01559g01002.1	sp|D8VPP5|AL11A_OLEEU	****	Pectinesterase 1	IPR011050 (Pectin lyase fold/virulence factor)	GO:0005618 (cell wall), GO:0030599 (pectinesterase activity), GO:0042545 (cell wall modification)
Niben101Scf01173g00014.1	sp|Q8RXR2|CLCF_ARATH	****	Chloride channel protein CLC-f	IPR001807 (Chloride channel, voltage gated)	GO:0005216 (ion channel activity), GO:0005247 (voltage-gated chloride channel activity), GO:0006821 (chloride transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf01402g02031.1	sp|P49641|MA2A2_HUMAN	****	Alpha-mannosidase 2x	IPR011013 (Galactose mutarotase-like domain), IPR011330 (Glycoside hydrolase/deacetylase, beta/alpha-barrel), IPR013780 (Glycosyl hydrolase, family 13, all-beta), IPR028995 (Glycoside hydrolase, families 57/38, central domain)	GO:0003824 (catalytic activity), GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0004559 (alpha-mannosidase activity), GO:0005975 (carbohydrate metabolic process), GO:0006013 (mannose metabolic process), GO:0008270 (zinc ion binding), GO:0015923 (mannosidase activity), GO:0030246 (carbohydrate binding)
Niben101Scf01594g00001.1	AT5G53590.1	*-*-	SAUR-like auxin-responsive protein family LENGTH=142	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf20000g00002.1	AT5G28900.1	****	Calcium-binding EF-hand family protein LENGTH=536	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf02015g04019.1	sp|Q3Z3C3|CBPA_SHISS	--*-	Curved DNA-binding protein	IPR001623 (DnaJ domain)	
Niben101Scf05438g03004.1	gb|KEH36874.1|	*-*-	5'-adenylylsulfate reductase [Medicago truncatula]	IPR012336 (Thioredoxin-like fold)	
Niben101Scf05943g00002.1	sp|Q40459|PSBO_TOBAC	****	Oxygen-evolving enhancer protein 1, chloroplastic	IPR002628 (Photosystem II PsbO, manganese-stabilising), IPR011250 (Outer membrane protein/outer membrane enzyme PagP , beta-barrel)	GO:0005509 (calcium ion binding), GO:0009279 (cell outer membrane), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019898 (extrinsic component of membrane), GO:0042549 (photosystem II stabilization)
Niben101Scf00780g01027.1	sp|Q9ZPE4|FBW2_ARATH	--*-	F-box protein FBW2	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf03114g03011.1	sp|A1RIQ1|HTPG_SHESW	***-	Chaperone protein HtpG	IPR001404 (Heat shock protein Hsp90 family)	GO:0005524 (ATP binding), GO:0006457 (protein folding), GO:0006950 (response to stress), GO:0051082 (unfolded protein binding)
Niben101Scf05645g05004.1	sp|Q5I4F9|AQP4_NOTAL	*-*-	Aquaporin-4	IPR000425 (Major intrinsic protein), IPR023271 (Aquaporin-like)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf13929g00001.1	sp|Q9Y580|RBM7_HUMAN	--**	RNA-binding protein 7	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf04332g02005.1	sp|P28178|PK2_DICDI	****	Protein kinase 2	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06094g01005.1	sp|Q0J9V6.2|Y4294_ORYSJ	--*-	RecName: Full=Uncharacterized protein product [Oryza sativa Japonica Group]		
Niben101Scf07882g00002.1	sp|O48540|MAN1_SOLLC	***-	Mannan endo-1,4-beta-mannosidase 1	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf22171g00006.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Ctg16479g00004.1	AT2G02910.1	***-	Protein of unknown function (DUF616) LENGTH=460	IPR006852 (Protein of unknown function DUF616)	
Niben101Scf05676g00002.1	ref|XP_002530720.1|	-**-	Protein SCRL10 precursor, putative [Ricinus communis] gb|EEF31674.1| Protein SCRL10 precursor, putative [Ricinus communis]		
Niben101Scf00152g25016.1	sp|Q5ZC82|LOG_ORYSJ	***-	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf06392g03001.1	sp|Q56K13|SF3B5_BOVIN	***-	Splicing factor 3B subunit 5	IPR009846 (Splicing factor 3B subunit 5/RDS3 complex subunit 10)	
Niben101Scf11895g03026.1	sp|B8GXP4|GRPE_CAUCN	*-*-	Protein GrpE	IPR000740 (GrpE nucleotide exchange factor)	GO:0000774 (adenyl-nucleotide exchange factor activity), GO:0006457 (protein folding), GO:0042803 (protein homodimerization activity), GO:0051087 (chaperone binding)
Niben101Scf08304g06005.1			Unknown protein		
Niben101Scf06233g01009.1	AT5G15510.2	***-	TPX2 (targeting protein for Xklp2) protein family LENGTH=519	IPR009675 (TPX2), IPR027329 (TPX2, C-terminal domain)	GO:0005819 (spindle), GO:0005874 (microtubule), GO:0007067 (mitotic nuclear division)
Niben101Scf04114g00030.1	gb|KEH16365.1|	*-*-	mitovirus RNA-dependent RNA polymerase [Medicago truncatula]		
Niben101Scf03757g06012.1	sp|O94183|NPC2_ASPOR	***-	Phosphatidylglycerol/phosphatidylinositol transfer protein	IPR014756 (Immunoglobulin E-set)	
Niben101Scf11795g00012.1	ref|WP_024592186.1|	***-	succinyldiaminopimelate aminotransferase [Pseudoalteromonas haloplanktis]	IPR009770 (Domain of unknown function DUF1338)	
Niben101Scf03224g00012.1	sp|O24145|4CL1_TOBAC	***-	4-coumarate--CoA ligase 1	IPR000873 (AMP-dependent synthetase/ligase), IPR025110 (AMP-binding enzyme C-terminal domain)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf24355g00006.1	sp|Q8KCD8|DNAJ_CHLTE	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf08653g07014.1	gb|ADM26560.1|	***-	nuclear localized protein 1 [Nicotiana benthamiana]	IPR028045 (Protein of unknown function DUF4539)	
Niben101Scf04160g01005.1			Unknown protein		
Niben101Scf00133g02001.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf04727g07005.1	sp|Q9CZW4|ACSL3_MOUSE	***-	Long-chain-fatty-acid--CoA ligase 3	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf02272g02004.1	ref|NP_001062215.1|	***-	product [Oryza sativa Japonica Group]		
Niben101Scf00577g02008.1	sp|Q9LS46|ALMT9_ARATH	****	Aluminum-activated malate transporter 9	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Ctg15508g00001.1	gb|AAF79490.1|AC022492_34	--*-	F1L3.4 [Arabidopsis thaliana]		
Niben101Scf05082g04004.1	AT1G10210.1	****	mitogen-activated protein kinase 1 LENGTH=370	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004707 (MAP kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01274g01001.1	sp|A2VDN6|SF3A1_BOVIN	*-*-	Splicing factor 3A subunit 1	IPR000061 (SWAP/Surp), IPR022030 (Pre-mRNA splicing factor PRP21-like protein)	GO:0003723 (RNA binding), GO:0006396 (RNA processing)
Niben101Scf09230g03006.1			Unknown protein		
Niben101Scf01681g12004.1	sp|Q13043|STK4_HUMAN	*-**	Serine/threonine-protein kinase 4	IPR011009 (Protein kinase-like domain), IPR016024 (Armadillo-type fold)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005488 (binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02411g01007.1	AT4G27280.1	****	Calcium-binding EF-hand family protein LENGTH=130	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf00141g01002.1	sp|Q39065|COPT1_ARATH	****	Copper transporter 1	IPR007274 (Ctr copper transporter)	GO:0005375 (copper ion transmembrane transporter activity), GO:0016021 (integral component of membrane), GO:0035434 (copper ion transmembrane transport)
Niben101Scf08724g01003.1	AT4G32700.2	*-**	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding LENGTH=2154	IPR000008 (C2 domain), IPR001650 (Helicase, C-terminal), IPR004179 (Sec63 domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014756 (Immunoglobulin E-set), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005515 (protein binding), GO:0005524 (ATP binding)
Niben101Scf03093g00004.1	sp|Q8YSD5|ATKB2_NOSS1	*-**	Potassium-transporting ATPase B chain 2	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0005507 (copper ion binding), GO:0006812 (cation transport), GO:0016021 (integral component of membrane), GO:0019829 (cation-transporting ATPase activity), GO:0030001 (metal ion transport), GO:0046872 (metal ion binding)
Niben101Ctg08893g00001.1	sp|P49972|SR542_SOLLC	*-**	Signal recognition particle 54 kDa protein 2	IPR000897 (Signal recognition particle, SRP54 subunit, GTPase domain), IPR004125 (Signal recognition particle, SRP54 subunit, M-domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0048500 (signal recognition particle)
Niben101Scf02532g00001.1			Unknown protein		
Niben101Scf08465g04007.1	sp|Q9C7U5|E132_ARATH	***-	Glucan endo-1,3-beta-glucosidase 2	IPR000490 (Glycoside hydrolase, family 17), IPR012946 (X8 domain), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf13221g00002.1	sp|Q9LIP6|C71BV_ARATH	*-*-	Cytochrome P450 71B34	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00449g06016.1	sp|B9SXY8|CSPLE_RICCO	***-	CASP-like protein 4D1	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf00691g03015.1	sp|Q93VJ4|BEE2_ARATH	*-*-	Transcription factor BEE 2	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf04786g01001.1	AT4G32250.1	****	Protein kinase superfamily protein LENGTH=611	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf10968g00006.1	dbj|BAB09991.1|	--*-	mutator-like transposase-like [Arabidopsis thaliana]		
Niben101Scf00603g03019.1	sp|Q9Y6E0|STK24_HUMAN	*-**	Serine/threonine-protein kinase 24	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05654g00006.1	sp|Q84WS8|U1125_ARATH	***-	U11/U12 small nuclear ribonucleoprotein 25 kDa protein	IPR029071 (Ubiquitin-related domain)	
Niben101Scf09411g00008.1	AT1G72440.1	*-*-	CCAAT-binding factor LENGTH=1043	IPR005612 (CCAAT-binding factor)	
Niben101Scf11126g10001.1	sp|Q6PFJ9|ARI1_DANRE	*-*-	E3 ubiquitin-protein ligase arih1	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	
Niben101Scf00010g01004.1	sp|Q03015|NDUS6_NEUCR	***-	NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial	IPR019377 (NADH-ubiquinone oxidoreductase, subunit 10)	
Niben101Scf11379g00010.1	sp|P55993|RPOD_HELPY	*-**	RNA polymerase sigma factor RpoD	IPR014284 (RNA polymerase sigma-70 like domain), IPR016262 (RNA polymerase sigma factor, SigB/SigC/SigD, plastid)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006352 (DNA-templated transcription, initiation), GO:0006355 (regulation of transcription, DNA-templated), GO:0016987 (sigma factor activity)
Niben101Scf00495g01025.1			Unknown protein		
Niben101Scf02207g05028.1	gb|AAT39304.2|	*-*-	Transposon MuDR mudrA-like protein, putative [Solanum demissum]		
Niben101Scf02929g06108.1	ref|NP_064026.1|	***-	orf145 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris] dbj|BAA99337.1| orf145 [Beta vulgaris subsp. vulgaris]		
Niben101Scf02245g02007.1	sp|Q9V464|ASF1_DROME	***-	Histone chaperone asf1	IPR006818 (Histone chaperone, ASF1-like)	GO:0005634 (nucleus), GO:0006333 (chromatin assembly or disassembly)
Niben101Scf02929g06026.1			Unknown protein		
Niben101Scf09870g00014.1	AT3G50940.1	*-*-	P-loop containing nucleoside triphosphate hydrolases superfamily protein LENGTH=451	IPR025753 (AAA-type ATPase, N-terminal domain)	
Niben101Scf00109g10007.1	ref|NP_001052628.1|	***-	product [Oryza sativa Japonica Group]	IPR021775 (Protein of unknown function DUF3339)	
Niben101Scf01226g01002.1	sp|Q9FMV0|FBL91_ARATH	***-	F-box/LRR-repeat protein	IPR001810 (F-box domain), IPR013702 (FIST domain, N-terminal), IPR019494 (FIST C domain)	GO:0005515 (protein binding)
Niben101Scf00898g00004.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf11361g00004.1	AT4G00110.1	****	UDP-D-glucuronate 4-epimerase 3 LENGTH=430	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding)
Niben101Scf02600g00011.1	AT4G27010.2	*-*-	INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages;	IPR021714 (Nucleolar pre-ribosomal-associated protein 1, N-terminal)	
Niben101Scf05895g02005.1	sp|O22860|RL38_ARATH	--*-	60S ribosomal protein L38	IPR002675 (Ribosomal protein L38e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01799g01001.1	sp|P19963|ALL1_OLEEU	***-	Major pollen allergen Ole e 1	IPR006041 (Pollen Ole e 1 allergen/extensin)	
Niben101Scf07050g00008.1	sp|Q38898|AKT2_ARATH	*-*-	Potassium channel AKT2/3	IPR014710 (RmlC-like jelly roll fold), IPR015155 (PLAA family ubiquitin binding, PFU), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding)
Niben101Scf01133g11002.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01124g03003.1	ref|NP_001044668.1|	*-*-	product [Oryza sativa Japonica Group]		
Niben101Scf02927g09007.1	sp|Q9FDZ9|RL212_ARATH	***-	60S ribosomal protein L21-2	IPR001147 (Ribosomal protein L21e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf34590g00007.1	sp|Q68S26|PSBA_PANGI	*-**	Photosystem Q(B) protein	IPR000484 (Photosynthetic reaction centre, L/M)	GO:0009772 (photosynthetic electron transport in photosystem II), GO:0019684 (photosynthesis, light reaction), GO:0045156 (electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity)
Niben101Scf00272g10012.1	sp|Q32PE2|MOG1_BOVIN	***-	Ran guanine nucleotide release factor	IPR007681 (Ran-interacting Mog1 protein)	
Niben101Scf01123g01015.1	sp|Q84VW5|MED32_ARATH	***-	Mediator of RNA polymerase II transcription subunit 32		
Niben101Scf00687g08008.1	sp|P14233|TGA1B_TOBAC	--**	TGACG-sequence-specific DNA-binding protein TGA-1B	IPR004827 (Basic-leucine zipper domain)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf03277g02009.1	sp|P58813|APGM_METKA	***-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	IPR004456 (Bisphosphoglycerate-independent phosphoglycerate mutase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0046872 (metal ion binding)
Niben101Scf04841g00035.1	ref|XP_002526600.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF35759.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf00786g02014.1	ref|XP_002509497.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF50884.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04607g06010.1			Unknown protein		
Niben101Scf02497g01015.1	sp|Q6UX07|DHR13_HUMAN	*-**	Dehydrogenase/reductase SDR family member 13	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf09082g00016.1	sp|P46643|AAT1_ARATH	***-	Aspartate aminotransferase, mitochondrial	IPR000796 (Aspartate/other aminotransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0008483 (transaminase activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf01716g00024.1	sp|Q9LMM0|GPAT4_ARATH	***-	Glycerol-3-phosphate 2-O-acyltransferase 4	IPR002123 (Phospholipid/glycerol acyltransferase)	GO:0008152 (metabolic process), GO:0016746 (transferase activity, transferring acyl groups)
Niben101Scf01177g06008.1	ref|XP_003614078.1|	--*-	HGWP repeat containing protein-like protein [Medicago truncatula]		
Niben101Scf06968g00008.1	sp|Q8CE22|DMTF1_MOUSE	*-**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08195g03022.1	AT4G25300.1	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=356	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01188g00025.1			Unknown protein		
Niben101Scf01739g08016.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf08176g00025.1	AT2G07360.2	*-*-	SH3 domain-containing protein LENGTH=1198		
Niben101Scf03435g01016.1	AT1G08630.1	***-	threonine aldolase 1 LENGTH=358	IPR015424 (Pyridoxal phosphate-dependent transferase), IPR023603 (Threonine aldolase)	GO:0003824 (catalytic activity), GO:0006520 (cellular amino acid metabolic process), GO:0016829 (lyase activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf07162g03014.1	sp|Q9M907|PP217_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf01297g04024.1	sp|P23901|ALDR_HORVU	*-**	Aldose reductase	IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)	GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02451g00005.1			Unknown protein		
Niben101Scf07370g02018.1	emb|CDY65073.1|	***-	BnaCnng45830D [Brassica napus]		
Niben101Scf04083g04042.1			Unknown protein		
Niben101Scf00934g01006.1	sp|A6Q1L5|EFTU_NITSB	****	Elongation factor Tu	IPR004541 (Translation elongation factor EFTu/EF1A, bacterial/organelle), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003746 (translation elongation factor activity), GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006414 (translational elongation)
Niben101Scf05231g01004.1	gb|AAU90303.2|	****	Zinc finger containing preotein, putative [Solanum demissum]	IPR001878 (Zinc finger, CCHC-type), IPR007527 (Zinc finger, SWIM-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf04675g01003.1	sp|Q54EH1|EPN_DICDI	*-*-	Epsin	IPR008942 (ENTH/VHS)	
Niben101Scf00530g11014.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf05682g00009.1	AT5G45180.1	****	Flavin-binding monooxygenase family protein LENGTH=459	IPR020946 (Flavin monooxygenase-like)	GO:0004499 (N,N-dimethylaniline monooxygenase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0050661 (NADP binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09604g01006.1	ref|XP_002533282.1|	****	zinc ion binding protein, putative [Ricinus communis] gb|EEF29114.1| zinc ion binding protein, putative [Ricinus communis]	IPR001781 (Zinc finger, LIM-type), IPR003903 (Ubiquitin interacting motif), IPR022087 (Protein DA1 like)	GO:0008270 (zinc ion binding)
Niben101Scf01529g04008.1	AT5G03720.1	*-**	heat shock transcription factor A3 LENGTH=412	IPR011991 (Winged helix-turn-helix DNA-binding domain), IPR027725 (Heat shock transcription factor family)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0009408 (response to heat), GO:0043565 (sequence-specific DNA binding)
Niben101Scf00317g02005.1	AT5G47380.1	***-	Protein of unknown function, DUF547 LENGTH=618	IPR006869 (Domain of unknown function DUF547), IPR025757 (Ternary complex factor MIP1, leucine-zipper)	
Niben101Scf06986g02008.1	sp|Q6NV31|WDR82_DANRE	--*-	WD repeat-containing protein 82	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf02081g01001.1	AT2G45900.1	*-*-	Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related LENGTH=720	IPR022212 (Protein of unknown function DUF3741), IPR025486 (Domain of unknown function DUF4378)	
Niben101Scf03323g01004.1	sp|Q04SM4|SYK_LEPBJ	*-**	Lysine--tRNA ligase	IPR018150 (Aminoacyl-tRNA synthetase, class II (D/K/N)-like)	GO:0000166 (nucleotide binding), GO:0004812 (aminoacyl-tRNA ligase activity), GO:0005524 (ATP binding), GO:0006418 (tRNA aminoacylation for protein translation)
Niben101Scf01682g01009.1	ref|XP_007017683.1|	***-	Forkhead-associated domain-containing protein, putative [Theobroma cacao] gb|EOY14908.1| Forkhead-associated domain-containing protein, putative [Theobroma cacao]		
Niben101Scf02635g03005.1	sp|P33077|IAA4_ARATH	*-*-	Auxin-responsive protein IAA4	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf06249g05020.1	AT2G26135.1	*-**	RING/U-box protein with C6HC-type zinc finger LENGTH=384	IPR002867 (Zinc finger, C6HC-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01653g02027.1	sp|Q0V4C4|FES1_PHANO	*-*-	Hsp70 nucleotide exchange factor FES1	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf09523g00002.1	sp|Q6YS30|RH5_ORYSJ	--*-	DEAD-box ATP-dependent RNA helicase 5	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf14566g01014.1	sp|P16627|HS71L_MOUSE	***-	Heat shock 70 kDa protein 1-like	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain)	
Niben101Scf08001g02007.1	emb|CDX95432.1|	***-	BnaC01g33240D [Brassica napus]		
Niben101Scf08704g01007.1	gb|KEH31824.1|	***-	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]		
Niben101Scf04562g01004.1	sp|P49972|SR542_SOLLC	****	Signal recognition particle 54 kDa protein 2	IPR000897 (Signal recognition particle, SRP54 subunit, GTPase domain), IPR004125 (Signal recognition particle, SRP54 subunit, M-domain), IPR013822 (Signal recognition particle, SRP54 subunit, helical bundle), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0006614 (SRP-dependent cotranslational protein targeting to membrane), GO:0008312 (7S RNA binding), GO:0048500 (signal recognition particle)
Niben101Scf05382g03008.1	sp|Q9BPZ7|SIN1_HUMAN	--*-	Target of rapamycin complex 2 subunit MAPKAP1		
Niben101Scf07783g01013.1	sp|P42423|YXDL_BACSU	*-**	ABC transporter ATP-binding protein YxdL	IPR003439 (ABC transporter-like), IPR013525 (ABC-2 type transporter), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016020 (membrane), GO:0016887 (ATPase activity)
Niben101Scf08673g02019.1			Unknown protein		
Niben101Scf00717g00006.1	gb|KEH21046.1|	***-	myosin heavy chain-like protein [Medicago truncatula]	IPR019448 (EEIG1/EHBP1 N-terminal domain)	
Niben101Scf05609g02029.1	emb|CDY12774.1|	***-	BnaC04g28670D [Brassica napus]		
Niben101Scf08137g05004.1			Unknown protein		
Niben101Scf00736g04010.1	sp|A1JJM8|SPEE_YERE8	***-	Polyamine aminopropyl transferase	IPR001045 (Spermidine/spermine synthases family), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase)	GO:0003824 (catalytic activity)
Niben101Scf00428g12019.1	AT2G35660.1	*-*-	FAD/NAD(P)-binding oxidoreductase family protein LENGTH=439	IPR002938 (Monooxygenase, FAD-binding)	
Niben101Scf01237g01011.1	sp|Q0WLB5|CLAH2_ARATH	*-*-	Clathrin heavy chain 2	IPR011990 (Tetratricopeptide-like helical domain), IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016192 (vesicle-mediated transport)
Niben101Scf02556g00003.1	sp|Q8D237|RL11_WIGBR	***-	50S ribosomal protein L11	IPR000911 (Ribosomal protein L11/L12)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01517g08040.1	sp|Q9UP83|COG5_HUMAN	****	Conserved oligomeric Golgi complex subunit 5	IPR019465 (Conserved oligomeric Golgi complex subunit 5)	GO:0006891 (intra-Golgi vesicle-mediated transport), GO:0017119 (Golgi transport complex)
Niben101Scf09649g06015.1	gb|ABN09786.1|	--*-	Histone H4; Histone-fold [Medicago truncatula]		
Niben101Scf06267g03011.1	sp|Q7XM13|WOX1A_ORYSJ	*-*-	WUSCHEL-related homeobox 1A	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf03548g02027.1	sp|Q3MID3|ARFG2_RAT	*-**	ADP-ribosylation factor GTPase-activating protein 2	IPR001164 (Arf GTPase activating protein), IPR011993 (Pleckstrin homology-like domain), IPR020683 (Ankyrin repeat-containing domain), IPR027267 (Arfaptin homology (AH) domain/BAR domain)	GO:0005515 (protein binding), GO:0005737 (cytoplasm), GO:0008060 (ARF GTPase activator activity), GO:0008270 (zinc ion binding), GO:0032312 (regulation of ARF GTPase activity)
Niben101Scf04096g11010.1	AT5G07250.1	***-	RHOMBOID-like protein 3 LENGTH=346	IPR002610 (Peptidase S54, rhomboid)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0016021 (integral component of membrane)
Niben101Scf02235g04013.1	sp|Q9SRW7|APK3_ARATH	****	Adenylyl-sulfate kinase 3	IPR002891 (Adenylylsulphate kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0000103 (sulfate assimilation), GO:0004020 (adenylylsulfate kinase activity), GO:0005524 (ATP binding)
Niben101Scf09170g02003.1	sp|Q8H1F4|COPZ3_ARATH	***-	Coatomer subunit zeta-3	IPR011012 (Longin-like domain)	GO:0006810 (transport)
Niben101Scf07933g01011.1	gb|ACB38657.1|	*-*-	mutant low phytic acid protein 1 [Oryza sativa Japonica Group]		
Niben101Scf05202g00004.1	emb|CAA65228.1|	*-*-	glutamic acid-rich protein [Solanum berthaultii]		
Niben101Scf00024g02018.1	sp|Q8L7F9|B3GTF_ARATH	****	Beta-1,3-galactosyltransferase 15	IPR002659 (Glycosyl transferase, family 31), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0006486 (protein glycosylation), GO:0008378 (galactosyltransferase activity), GO:0016020 (membrane), GO:0030246 (carbohydrate binding)
Niben101Scf02266g00005.1	sp|Q9XFM6|MSBP1_ARATH	****	Membrane steroid-binding protein 1	IPR001199 (Cytochrome b5-like heme/steroid binding domain)	GO:0020037 (heme binding)
Niben101Scf00702g00023.1			Unknown protein		
Niben101Scf08549g00014.1	sp|P27880|HSP12_MEDSA	***-	18.2 kDa class I heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf04033g02017.1	gb|AEW48196.1|	*-*-	disease resistance protein RGH7 [Solanum chacoense]		
Niben101Scf04139g01004.1	emb|CDY01517.1|	-**-	BnaC07g35070D [Brassica napus]		
Niben101Scf03599g00006.1	AT4G00060.1	*-**	Nucleotidyltransferase family protein LENGTH=1481	IPR002058 (PAP/25A-associated), IPR002934 (Nucleotidyl transferase domain)	GO:0016779 (nucleotidyltransferase activity)
Niben101Scf05750g04002.1	sp|P54122|RNJ_CORGL	***-	Ribonuclease J	IPR004613 (Ribonuclease J), IPR009057 (Homeodomain-like), IPR011108 (RNA-metabolising metallo-beta-lactamase)	GO:0003677 (DNA binding), GO:0003723 (RNA binding), GO:0004519 (endonuclease activity), GO:0046872 (metal ion binding)
Niben101Scf00603g08024.1	sp|P62302|RS13_SOYBN	***-	40S ribosomal protein S13	IPR000589 (Ribosomal protein S15), IPR012606 (Ribosomal protein S13/S15, N-terminal)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01633g00036.1	AT5G56850.1	*-*-	unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). LENGTH=551		
Niben101Scf15817g00004.1	sp|A9L9A7|YCF4_LEMMI	*-**	Photosystem I assembly protein Ycf4	IPR002325 (Cytochrome f), IPR003359 (Photosystem I Ycf4, assembly), IPR024094 (Cytochrome f large domain)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0020037 (heme binding), GO:0031361 (integral component of thylakoid membrane)
Niben101Scf01297g03001.1	sp|Q6C9R9|SFH5_YARLI	***-	Phosphatidylinositol transfer protein SFH5	IPR001251 (CRAL-TRIO domain), IPR011074 (CRAL/TRIO, N-terminal domain)	
Niben101Scf04993g03011.1	gb|AAU90303.2|	*-**	Zinc finger containing preotein, putative [Solanum demissum]	IPR001878 (Zinc finger, CCHC-type)	GO:0003676 (nucleic acid binding), GO:0008270 (zinc ion binding)
Niben101Scf01283g02030.1	dbj|BAD66730.1|	--*-	orf141 [Beta vulgaris subsp. vulgaris] dbj|BAD66774.1| orf141 [Beta vulgaris subsp. vulgaris]		
Niben101Scf25868g00003.1	AT3G07030.1	*-**	Alba DNA/RNA-binding protein LENGTH=405	IPR002775 (DNA/RNA-binding protein Alba-like)	GO:0003676 (nucleic acid binding)
Niben101Scf02272g04021.1			Unknown protein		
Niben101Scf19757g00001.1	sp|Q8K224|NAT10_MOUSE	--*-	N-acetyltransferase 10		
Niben101Scf08152g00004.1	emb|CDY09629.1|	*-*-	BnaC07g34320D [Brassica napus]	IPR012438 (Protein of unknown function DUF1639)	
Niben101Scf02537g13013.1	sp|Q68CR7|LRC66_HUMAN	*-*-	Leucine-rich repeat-containing protein 66	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR025875 (Leucine rich repeat 4)	GO:0005515 (protein binding)
Niben101Scf07788g00007.1	ref|XP_002521463.1|	*-*-	Microtubule-associated protein futsch, putative [Ricinus communis] gb|EEF40953.1| Microtubule-associated protein futsch, putative [Ricinus communis]		
Niben101Scf02819g07005.1			Unknown protein		
Niben101Scf00398g03005.1	sp|Q5A4W8|BDF1_CANAL	*-*-	Bromodomain-containing factor 1	IPR001487 (Bromodomain), IPR027353 (NET domain)	GO:0005515 (protein binding)
Niben101Scf04082g02014.1	sp|Q4V7B8|RNF44_RAT	*-*-	RING finger protein 44	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05123g01004.1	gb|ACG39425.1|	*-**	ubiquitin-protein ligase/ zinc ion binding protein [Zea mays]	IPR002867 (Zinc finger, C6HC-type)	GO:0008270 (zinc ion binding)
Niben101Scf11723g02006.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00893g01039.1	sp|Q9ZPV9|SY112_ARATH	***-	Syntaxin-112	IPR010989 (t-SNARE)	GO:0005484 (SNAP receptor activity), GO:0005515 (protein binding), GO:0006886 (intracellular protein transport), GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf06823g02010.1	sp|Q9LQ16|PPR94_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02944g01016.1	AT4G32440.2	***-	Plant Tudor-like RNA-binding protein LENGTH=393	IPR005491 (EMSY N-terminal), IPR008395 (Agenet-like domain), IPR014002 (Tudor-like, plant)	
Niben101Scf03227g03034.1			Unknown protein		
Niben101Scf03021g03017.1	sp|Q8RWS6|FRO6_ARATH	*-*-	Ferric reduction oxidase 6		
Niben101Scf03111g01002.1	sp|Q5HZ36|GAT21_ARATH	--**	GATA transcription factor 21	IPR013088 (Zinc finger, NHR/GATA-type)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0008270 (zinc ion binding), GO:0043565 (sequence-specific DNA binding)
Niben101Scf01586g01009.1	sp|Q08CG8|RNF44_DANRE	*-*-	RING finger protein 44	IPR011016 (Zinc finger, RING-CH-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf06183g04003.1	sp|A3AHG5|LEA1_ORYSJ	--*-	Late embryogenesis abundant protein 1	IPR004238 (Late embryogenesis abundant protein, LEA-3)	
Niben101Scf08467g03008.1	AT1G22400.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf39462g00004.1	sp|Q8LDQ4|TAP46_ARATH	***-	PP2A regulatory subunit TAP46	IPR007304 (TAP42-like protein)	GO:0009966 (regulation of signal transduction)
Niben101Scf01796g01001.1	sp|Q9LXV5|NFYA1_ARATH	****	Nuclear transcription factor Y subunit A-1	IPR001289 (CCAAT-binding transcription factor, subunit B)	GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03766g14010.1	sp|P81391|MYB05_ANTMA	***-	Myb-related protein 305	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf08523g00026.1	sp|Q9ATF5|RL18A_CASSA	***-	60S ribosomal protein L18a	IPR023573 (Ribosomal protein L18a/LX), IPR028877 (50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf07773g00004.1	AT5G64220.1	****	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains LENGTH=1050	IPR000048 (IQ motif, EF-hand binding site), IPR005559 (CG-1 DNA-binding domain), IPR013783 (Immunoglobulin-like fold), IPR014756 (Immunoglobulin E-set), IPR020683 (Ankyrin repeat-containing domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003677 (DNA binding), GO:0005515 (protein binding), GO:0005634 (nucleus)
Niben101Scf09151g02022.1	AT1G28240.1	*-*-	Protein of unknown function (DUF616) LENGTH=581	IPR006852 (Protein of unknown function DUF616)	
Niben101Scf06221g04021.1			Unknown protein		
Niben101Scf03056g01013.1	AT3G21660.1	*-*-	UBX domain-containing protein LENGTH=435	IPR029071 (Ubiquitin-related domain)	GO:0005515 (protein binding)
Niben101Scf01817g02038.1	sp|P35134|UBC11_ARATH	***-	Ubiquitin-conjugating enzyme E2 11	IPR016135 (Ubiquitin-conjugating enzyme/RWD-like)	
Niben101Scf06186g06011.1	sp|Q6RVV4|TIC32_PEA	*-*-	Short-chain dehydrogenase TIC 32, chloroplastic	IPR016040 (NAD(P)-binding domain)	
Niben101Scf00854g05030.1			Unknown protein		
Niben101Scf06387g01018.1	sp|Q9FIX3|PP407_ARATH	*-*-	Pentatricopeptide repeat-containing protein		
Niben101Scf25893g00007.1	sp|Q9SCU0|SDR2A_ARATH	****	Short-chain dehydrogenase reductase 2a	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf01487g00002.1	sp|Q9S7T8|SPZX_ARATH	*-*-	Serpin-ZX	IPR000215 (Serpin family), IPR023796 (Serpin domain)	GO:0005615 (extracellular space)
Niben101Scf02001g01004.1	sp|Q9NW13|RBM28_HUMAN	*-**	RNA-binding protein 28	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf32880g00003.1	gb|KEH27304.1|	*-*-	superkiller-like protein [Medicago truncatula]	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf13640g02002.1	ref|XP_007048946.1|	***-	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative isoform 2, partial [Theobroma cacao] gb|EOX93103.1| Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative isoform 2, partial [Theobroma cacao]		
Niben101Scf01697g17002.1			Unknown protein		
Niben101Scf00321g04010.1	ref|WP_026733342.1|	*-*-	epimerase [Fischerella sp. PCC 9605]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf01550g01003.1	sp|Q94A65|STR14_ARATH	***-	Rhodanese-like domain-containing protein 14, chloroplastic	IPR001763 (Rhodanese-like domain)	
Niben101Scf05827g01001.1	sp|Q9ZUN5|TET2_ARATH	***-	Tetraspanin-2		
Niben101Scf01047g01008.1	gb|AES94380.2|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf02042g00014.1	sp|O95208|EPN2_HUMAN	*-*-	Epsin-2	IPR008942 (ENTH/VHS)	
Niben101Scf07465g03016.1	AT1G75590.1	***-	SAUR-like auxin-responsive protein family LENGTH=154	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf27305g00001.1	sp|Q57604|MJK1_METJA	--*-	Potassium channel protein 1	IPR013099 (Two pore domain potassium channel domain), IPR014710 (RmlC-like jelly roll fold), IPR021789 (Potassium channel, plant-type)	
Niben101Scf01538g00025.1			Unknown protein		
Niben101Scf03224g05004.1	AT4G31860.1	***-	Protein phosphatase 2C family protein LENGTH=357	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf04286g01031.1	AT3G17780.1	****	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;	IPR008417 (B-cell receptor-associated protein 29/31)	GO:0005783 (endoplasmic reticulum), GO:0006886 (intracellular protein transport), GO:0016021 (integral component of membrane)
Niben101Scf02156g08004.1	gb|AEZ02540.1|	*-*-	shattering 4, partial [Oryza rufipogon]	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding)
Niben101Scf22846g00006.1	sp|Q8H7N9|ATL31_ORYSJ	--*-	E3 ubiquitin-protein ligase	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf02790g02010.1	sp|O49564|CRK27_ARATH	*-**	Cysteine-rich receptor-like protein kinase 27	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07601g00006.1	sp|A7FNG1|ACSA_YERP3	***-	Acetyl-coenzyme A synthetase	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf08975g01001.1	sp|O49595|HMGB1_ARATH	***-	High mobility group B protein 1	IPR009071 (High mobility group box domain)	
Niben101Scf09708g10003.1	AT5G07360.1	*-*-	Amidase family protein LENGTH=659	IPR000120 (Amidase), IPR023631 (Amidase signature domain)	GO:0016884 (carbon-nitrogen ligase activity, with glutamine as amido-N-donor)
Niben101Scf08973g00018.1	sp|Q9ZW07|PUM1_ARATH	***-	Pumilio homolog 1	IPR012940 (Nucleic acid binding NABP), IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf07184g05021.1	AT2G34410.1	*-*-	O-acetyltransferase family protein LENGTH=540	IPR012419 (Cas1p 10 TM acyl transferase domain)	
Niben101Scf12568g00005.1	AT1G33560.1	***-	Disease resistance protein (CC-NBS-LRR class) family LENGTH=787		
Niben101Scf03150g03007.1	AT1G25550.1	***-	myb-like transcription factor family protein LENGTH=344	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf02044g12030.1	emb|CDX88502.1|	*-*-	BnaC06g39460D [Brassica napus]		
Niben101Scf05767g07012.1	sp|G5EGA6|DHRS4_CAEEL	****	Dehydrogenase/reductase SDR family member 4	IPR002347 (Glucose/ribitol dehydrogenase)	GO:0008152 (metabolic process), GO:0016491 (oxidoreductase activity)
Niben101Scf21544g00003.1	sp|Q9SJY5|PUMP5_ARATH	****	Mitochondrial uncoupling protein 5	IPR002030 (Mitochondrial brown fat uncoupling protein), IPR023395 (Mitochondrial carrier domain)	GO:0006839 (mitochondrial transport), GO:0031966 (mitochondrial membrane)
Niben101Scf15536g02038.1	sp|Q9TUG3|HSP72_CAPHI	***-	Heat shock-related 70 kDa protein 2	IPR013126 (Heat shock protein 70 family), IPR029047 (Heat shock protein 70kD, peptide-binding domain), IPR029048 (Heat shock protein 70kD, C-terminal domain)	
Niben101Scf08130g00016.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Ctg14352g00004.1	AT5G02970.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=514	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03748g00008.1	sp|Q96DD0|LRC39_HUMAN	*-*-	Leucine-rich repeat-containing protein 39	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)	GO:0005515 (protein binding)
Niben101Scf36382g00001.1	sp|Q2PMU2|PSAB_SOYBN	*-**	Photosystem I P700 chlorophyll a apoprotein A2	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf05804g05003.1	gb|AFW77109.1|	***-	alkaline alpha galactosidase 2 [Zea mays]	IPR008811 (Glycosyl hydrolases 36), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity)
Niben101Scf00136g03004.1	sp|Q28735|TMEDA_RABIT	--*-	Transmembrane emp24 domain-containing protein 10	IPR015720 (TMP21-related)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf03161g00007.1	sp|Q5F3K0|TTC27_CHICK	--*-	Tetratricopeptide repeat protein 27	IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf05516g04007.1	AT1G03980.1	****	phytochelatin synthase 2 LENGTH=452	IPR007719 (Phytochelatin synthase), IPR015407 (Phytochelatin synthase, C-terminal)	GO:0010038 (response to metal ion), GO:0016756 (glutathione gamma-glutamylcysteinyltransferase activity), GO:0046872 (metal ion binding), GO:0046938 (phytochelatin biosynthetic process)
Niben101Scf05158g00001.1	gb|KEH28740.1|	****	sulfate transporter-like protein [Medicago truncatula]	IPR011547 (Sulphate transporter)	GO:0008272 (sulfate transport), GO:0015116 (sulfate transmembrane transporter activity), GO:0016021 (integral component of membrane)
Niben101Scf06569g01012.1	sp|Q9FJP9|SDHB3_ARATH	*-*-	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial	IPR012675 (Beta-grasp domain)	
Niben101Scf09869g01020.1	sp|Q42134|PSA5B_ARATH	****	Proteasome subunit alpha type-5-B	IPR000426 (Proteasome alpha-subunit, N-terminal domain), IPR001353 (Proteasome, subunit alpha/beta), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0004175 (endopeptidase activity), GO:0004298 (threonine-type endopeptidase activity), GO:0005839 (proteasome core complex), GO:0006511 (ubiquitin-dependent protein catabolic process), GO:0019773 (proteasome core complex, alpha-subunit complex), GO:0051603 (proteolysis involved in cellular protein catabolic process)
Niben101Scf05650g02002.1	ref|XP_002533288.1|	--*-	conserved hypothetical protein [Ricinus communis] gb|EEF29099.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf05989g01007.1	sp|Q96519|PER11_ARATH	****	Peroxidase 11	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04977g00001.1			Unknown protein		
Niben101Scf04485g01003.1	emb|CDY19489.1|	*-*-	BnaC04g11100D [Brassica napus]		
Niben101Scf01196g00012.1	emb|CDY28836.1|	-**-	BnaC06g26240D [Brassica napus]		
Niben101Scf12270g00012.1	emb|CDY32323.1|	***-	BnaC01g36420D [Brassica napus]	IPR007608 (Senescence regulator S40)	
Niben101Scf04171g01020.1	gb|AES59710.2|	***-	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]	IPR024752 (Myb/SANT-like domain)	
Niben101Scf00890g01027.1	sp|O48850|VA725_ARATH	****	Vesicle-associated membrane protein 725	IPR001388 (Synaptobrevin), IPR011012 (Longin-like domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf00853g03001.1	ref|YP_006291803.1|	*-*-	orf34 gene product (mitochondrion) [Daucus carota subsp. sativus] gb|AEY81172.1| orf34 (mitochondrion) [Daucus carota subsp. sativus]		
Niben101Scf02348g12005.1	sp|Q6Z6W2|MAD57_ORYSJ	*-*-	MADS-box transcription factor 57	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf28298g00014.1	sp|Q9X248|FABG_THEMA	*-**	3-oxoacyl-[acyl-carrier-protein] reductase FabG	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR002347 (Glucose/ribitol dehydrogenase), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008152 (metabolic process), GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf04918g01003.1	ref|XP_002530764.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF31624.1| conserved hypothetical protein [Ricinus communis]	IPR016024 (Armadillo-type fold)	GO:0005488 (binding)
Niben101Scf05154g01015.1	sp|Q9FF52|RL123_ARATH	*-*-	60S ribosomal protein L12-3	IPR000911 (Ribosomal protein L11/L12)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Ctg07755g00002.1	sp|Q9LTH7|ACH12_ARATH	*-*-	1-aminocyclopropane-1-carboxylate oxidase homolog 12	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf01800g02008.1	sp|Q6IRP4|ABHDD_XENLA	***-	Alpha/beta hydrolase domain-containing protein 13	IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf03100g00005.1	ref|XP_003620488.1|	--*-	Kinesin [Medicago truncatula]		
Niben101Scf19479g00006.1	sp|Q8LEE9|FLA12_ARATH	*-*-	Fasciclin-like arabinogalactan protein 12	IPR000782 (FAS1 domain)	
Niben101Scf10360g00008.1	sp|Q8L868|E1311_ARATH	***-	Glucan endo-1,3-beta-glucosidase 11	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf02864g02012.1	sp|Q9FJZ9|PER72_ARATH	****	Peroxidase 72	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01502g00009.1	AT4G16580.1	*-*-	Protein phosphatase 2C family protein LENGTH=467	IPR001932 (Protein phosphatase 2C (PP2C)-like domain)	GO:0003824 (catalytic activity)
Niben101Scf02793g18010.1	AT2G42110.1	***-	unknown protein; Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). LENGTH=137		
Niben101Scf05486g01038.1	sp|Q5SPX3|RN215_MOUSE	*-*-	RING finger protein 215	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf01887g08025.1	AT2G26550.1	****	heme oxygenase 2 LENGTH=354	IPR016053 (Haem oxygenase-like), IPR016951 (Haem oxygenase (decyclizing), plant)	GO:0004392 (heme oxygenase (decyclizing) activity), GO:0006788 (heme oxidation), GO:0055114 (oxidation-reduction process)
Niben101Scf08567g00003.1	sp|A4GG97|PSAA_PHAVU	*-**	Photosystem I P700 chlorophyll a apoprotein A1	IPR001280 (Photosystem I PsaA/PsaB)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf22907g00008.1	gb|AAD24658.1|	--*-	Mutator-like transposase [Arabidopsis thaliana]		
Niben101Scf24096g00015.1	gb|AAD15518.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]	IPR004332 (Transposase, MuDR, plant)	
Niben101Scf15972g02029.1	AT5G61010.1	****	exocyst subunit exo70 family protein E2 LENGTH=639	IPR004140 (Exocyst complex protein Exo70), IPR016159 (Cullin repeat-like-containing domain)	GO:0000145 (exocyst), GO:0006887 (exocytosis)
Niben101Scf04103g11007.1	sp|Q09X06|YCF4_MORIN	*-**	Photosystem I assembly protein Ycf4	IPR003359 (Photosystem I Ycf4, assembly), IPR004282 (Chloroplast envelope membrane protein, CemA)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf01591g00006.1	sp|Q10QH3|CSPLL_ORYSJ	***-	CASP-like protein	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf17552g00003.1	sp|Q9ULJ7|ANR50_HUMAN	*-*-	Ankyrin repeat domain-containing protein 50	IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase), IPR020683 (Ankyrin repeat-containing domain)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf07655g01016.1			Unknown protein		
Niben101Scf00987g02008.1	AT3G23360.1	***-	Protein phosphatase 2C family protein LENGTH=260	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity)
Niben101Scf10814g00004.1			Unknown protein		
Niben101Scf01689g03015.1	ref|XP_007046458.1|	*-*-	Trigalactosyldiacylglycerol 1 isoform 5 [Theobroma cacao] gb|EOX90615.1| Trigalactosyldiacylglycerol 1 isoform 5 [Theobroma cacao]	IPR019341 (Alpha/gamma-adaptin-binding protein p34)	
Niben101Ctg05773g00001.1	sp|Q819L4|SPEA_BACCR	--*-	Arginine decarboxylase	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf07304g03012.1	sp|A6X554|LOVHK_OCHA4	--*-	Blue-light-activated histidine kinase	IPR000014 (PAS domain)	GO:0004871 (signal transducer activity), GO:0007165 (signal transduction)
Niben101Scf00100g00020.1	sp|Q6L545|GID1_ORYSJ	***-	Gibberellin receptor GID1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0008152 (metabolic process), GO:0016787 (hydrolase activity)
Niben101Scf06569g00001.1	ref|NP_001052968.1|	***-	product [Oryza sativa Japonica Group]	IPR008976 (Lipase/lipooxygenase, PLAT/LH2)	GO:0005515 (protein binding)
Niben101Scf10241g00005.1	ref|XP_007016886.1|	***-	Domain of Uncharacterized protein function isoform 6 [Theobroma cacao] gb|EOY34505.1| Domain of Uncharacterized protein function isoform 6 [Theobroma cacao]	IPR010369 (Protein of unknown function DUF966)	
Niben101Scf12258g00011.1	gb|AAF79490.1|AC022492_34	--*-	F1L3.4 [Arabidopsis thaliana]		
Niben101Scf04741g05001.1	sp|P93194|RPK1_IPONI	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02407g07002.1	sp|Q01559|HMDH_NICSY	*-**	3-hydroxy-3-methylglutaryl-coenzyme A reductase	IPR002202 (Hydroxymethylglutaryl-CoA reductase, class I/II), IPR023074 (Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain)	GO:0004420 (hydroxymethylglutaryl-CoA reductase (NADPH) activity), GO:0015936 (coenzyme A metabolic process), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10442g00010.1	sp|Q33BX5|NU5C_NICTO	*-**	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic	IPR002128 (NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminal)	GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process)
Niben101Scf20744g00002.1			Unknown protein		
Niben101Scf01073g02005.1	AT1G24350.3	***-	Acid phosphatase/vanadium-dependent haloperoxidase-related protein LENGTH=186	IPR003832 (Acid phosphatase/vanadium-dependent haloperoxidase-related)	
Niben101Scf12858g01026.1	sp|O49292|PPD4_ARATH	***-	PsbP domain-containing protein 4, chloroplastic	IPR002683 (Photosystem II PsbP, oxygen evolving complex)	GO:0005509 (calcium ion binding), GO:0009523 (photosystem II), GO:0009654 (photosystem II oxygen evolving complex), GO:0015979 (photosynthesis), GO:0019898 (extrinsic component of membrane)
Niben101Scf02522g01006.1	ref|WP_015172339.1|	*-**	rib PSRP-3/Ycf65 [Geitlerinema sp. PCC 7407]	IPR006924 (Ribosomal protein PSRP-3/Ycf65)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf03080g04024.1	sp|Q6B8R7|RPOC1_GRATL	--*-	DNA-directed RNA polymerase subunit beta'		
Niben101Scf09781g00011.1	sp|Q2QQX6|ARFX_ORYSJ	*-*-	Auxin response factor 24	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf04205g03007.1	gb|AAU90303.2|	***-	Zinc finger containing preotein, putative [Solanum demissum]		
Niben101Scf00576g02011.1	sp|Q08435|PMA1_NICPL	****	Plasma membrane ATPase 1	IPR001757 (P-type ATPase), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR023214 (HAD-like domain), IPR023298 (P-type ATPase,  transmembrane domain)	GO:0000166 (nucleotide binding), GO:0016021 (integral component of membrane)
Niben101Scf11447g02004.1	sp|Q2JN82|PSBX_SYNJB	--**	Photosystem II reaction center X protein	IPR009518 (Photosystem II PsbX)	GO:0009523 (photosystem II), GO:0015979 (photosynthesis), GO:0016020 (membrane)
Niben101Scf03561g01010.1	sp|Q9SSQ4|FRS6_ARATH	*-*-	Protein FAR1-RELATED SEQUENCE 6	IPR004330 (FAR1 DNA binding domain), IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf02383g00002.1	sp|Q9FFK1|SYP31_ARATH	*-*-	Syntaxin-31	IPR010989 (t-SNARE)	GO:0016020 (membrane), GO:0016192 (vesicle-mediated transport)
Niben101Scf03047g00007.1	AT1G11430.1	***-	plastid developmental protein DAG, putative LENGTH=232		
Niben101Scf09649g06016.1	sp|Q9FY79|LAC14_ARATH	***-	Laccase-14	IPR017761 (Laccase)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0046274 (lignin catabolic process), GO:0048046 (apoplast), GO:0052716 (hydroquinone:oxygen oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00820g04014.1			Unknown protein		
Niben101Scf02553g02001.1	sp|Q9T048|DRL27_ARATH	*-*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf05419g01001.1	sp|Q6IP06|STK3_XENLA	*-**	Serine/threonine-protein kinase 3	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf03599g00008.1	ref|WP_020238864.1|	***-	Holliday junction resolvase [Escherichia coli]	IPR005227 (Resolvase, holliday junction-type, YqgF-like), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0005737 (cytoplasm), GO:0006139 (nucleobase-containing compound metabolic process), GO:0006281 (DNA repair), GO:0006310 (DNA recombination), GO:0006974 (cellular response to DNA damage stimulus), GO:0016788 (hydrolase activity, acting on ester bonds)
Niben101Scf02363g00015.1	sp|P48980|BGAL_SOLLC	***-	Beta-galactosidase	IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding)
Niben101Scf03479g05038.1	sp|Q55GA4|CDC45_DICDI	--*-	Cell division control protein 45 homolog	IPR003874 (CDC45 family)	GO:0006270 (DNA replication initiation)
Niben101Scf06537g00001.1	sp|P33240|CSTF2_HUMAN	--*-	Cleavage stimulation factor subunit 2	IPR025742 (Cleavage stimulation factor subunit 2, hinge domain), IPR026896 (Transcription termination and cleavage factor C-terminal domain)	
Niben101Scf05491g00001.1	sp|P00243|FER_SYNY4	***-	Ferredoxin	IPR010241 (Ferredoxin [2Fe-2S], plant), IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0022900 (electron transport chain), GO:0051536 (iron-sulfur cluster binding), GO:0051537 (2 iron, 2 sulfur cluster binding)
Niben101Scf00286g01001.1	sp|Q10SC8|CIPK9_ORYSJ	****	CBL-interacting protein kinase 9	IPR004041 (NAF domain), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0007165 (signal transduction), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00821g13017.1	AT3G24780.1	*-*-	Uncharacterised conserved protein UCP015417, vWA LENGTH=715	IPR024553 (Domain of unknown function DUF2828)	
Niben101Scf00161g01006.1	sp|C6T1G0|CASP7_SOYBN	***-	CASP-like protein 7	IPR006702 (Uncharacterised protein family UPF0497, trans-membrane plant)	
Niben101Scf01514g03007.1	AT4G21190.1	*-*-	Pentatricopeptide repeat (PPR) superfamily protein LENGTH=307		
Niben101Scf11389g01033.1	AT1G14360.1	***-	UDP-galactose transporter 3 LENGTH=331	IPR013657 (UAA transporter)	GO:0055085 (transmembrane transport)
Niben101Scf01111g01003.1	sp|P54873|HMCS_ARATH	****	Hydroxymethylglutaryl-CoA synthase	IPR010122 (Hydroxymethylglutaryl-CoA synthase, eukaryotic)	GO:0003824 (catalytic activity), GO:0004421 (hydroxymethylglutaryl-CoA synthase activity), GO:0008152 (metabolic process), GO:0008299 (isoprenoid biosynthetic process)
Niben101Scf06249g00005.1	ref|XP_002514761.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF47867.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf39220g00007.1	sp|P47735|RLK5_ARATH	*-**	Receptor-like protein kinase 5	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01269g14001.1			Unknown protein		
Niben101Scf12987g00004.1	sp|Q9VKV8|CFA20_DROME	***-	Cilia- and flagella-associated protein 20	IPR007714 (Cilia/flagella-associated protein 20)	
Niben101Scf04711g00016.1	sp|Q8RYM9|LAC2_ORYSJ	***-	Laccase-2	IPR008972 (Cupredoxin)	GO:0005507 (copper ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf00291g02056.1			Unknown protein		
Niben101Scf09686g00013.1	sp|P48020|HMDH1_SOLTU	****	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	IPR002202 (Hydroxymethylglutaryl-CoA reductase, class I/II), IPR023074 (Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain), IPR023282 (Hydroxymethylglutaryl-CoA reductase, N-terminal)	GO:0004420 (hydroxymethylglutaryl-CoA reductase (NADPH) activity), GO:0008299 (isoprenoid biosynthetic process), GO:0015936 (coenzyme A metabolic process), GO:0016021 (integral component of membrane), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050661 (NADP binding), GO:0050662 (coenzyme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf10006g00001.1	AT4G34200.1	*-*-	D-3-phosphoglycerate dehydrogenase LENGTH=603	IPR016040 (NAD(P)-binding domain), IPR029753 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site)	GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00752g02010.1	emb|CDY43413.1|	***-	BnaC07g14800D [Brassica napus]		
Niben101Scf02090g06012.1	AT1G34190.1	***-	NAC domain containing protein 17 LENGTH=557	IPR003441 (NAC domain)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03375g00004.1	AT2G04940.1	***-	scramblase-related LENGTH=392	IPR005552 (Scramblase)	
Niben101Scf08268g00007.1	emb|CDX90618.1|	***-	BnaA03g41630D [Brassica napus]		
Niben101Scf32362g00001.1	sp|Q9LPW7|AFB3_ARATH	*-*-	Protein AUXIN SIGNALING F-BOX 3		
Niben101Scf06671g03021.1	sp|Q9SUR9|SGT1A_ARATH	***-	Protein SGT1 homolog A	IPR007699 (SGS), IPR008978 (HSP20-like chaperone), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf02914g02032.1	gb|KEH34974.1|	****	nucleic acid-binding, OB-fold-like protein [Medicago truncatula]	IPR012340 (Nucleic acid-binding, OB-fold)	GO:0003676 (nucleic acid binding)
Niben101Scf19623g00016.1	sp|Q9FUT0|GSTU9_ARATH	***-	Glutathione S-transferase U9	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf00229g00003.1	sp|Q6NRG5|NDOR1_XENLA	--*-	NADPH-dependent diflavin oxidoreductase 1		
Niben101Scf06154g03011.1	AT1G33500.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=276		
Niben101Scf04754g03026.1	sp|O65399|E131_ARATH	*-*-	Glucan endo-1,3-beta-glucosidase 1	IPR012946 (X8 domain)	
Niben101Scf11232g01012.1	gb|ABB69784.1|	****	beta-glucan-binding protein 4 [Medicago truncatula]	IPR005200 (Endo-1,3(4)-beta-glucanase)	GO:0016998 (cell wall macromolecule catabolic process), GO:0052861 (glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group), GO:0052862 (glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group)
Niben101Scf10950g00010.1	AT4G13050.1	***-	Acyl-ACP thioesterase LENGTH=367	IPR002864 (Acyl-ACP thioesterase), IPR029069 (HotDog domain)	GO:0006633 (fatty acid biosynthetic process), GO:0016790 (thiolester hydrolase activity)
Niben101Scf09969g00001.1	AT5G23280.1	***-	TCP family transcription factor LENGTH=250	IPR005333 (Transcription factor, TCP)	
Niben101Scf02955g05013.1	sp|Q9LNW3|P2C03_ARATH	****	Protein phosphatase 2C 3	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf10169g01004.1	sp|F4IH21|TBL33_ARATH	***-	Protein trichome birefringence-like 33	IPR025846 (PMR5 N-terminal domain), IPR026057 (PC-Esterase)	
Niben101Scf00400g00001.1	gb|KEH29396.1|	***-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf01528g01003.1	AT3G60690.1	***-	SAUR-like auxin-responsive protein family LENGTH=170	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf01166g18015.1			Unknown protein		
Niben101Scf01460g01005.1	sp|Q0UPV4|PSF3_PHANO	***-	DNA replication complex GINS protein PSF3	IPR021151 (GINS complex)	
Niben101Scf09321g02027.1	AT1G55180.1	***-	phospholipase D alpha 4 LENGTH=762	IPR000008 (C2 domain), IPR015679 (Phospholipase D family)	GO:0003824 (catalytic activity), GO:0005515 (protein binding), GO:0008152 (metabolic process)
Niben101Scf10222g08004.1	sp|Q9C7D6|SCP17_ARATH	****	Serine carboxypeptidase-like 17	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01734g01051.1	AT4G12830.1	*-*-	alpha/beta-Hydrolases superfamily protein LENGTH=393		
Niben101Scf00682g01001.1	emb|CDY29579.1|	*-*-	BnaA03g54240D [Brassica napus]	IPR008889 (VQ)	
Niben101Scf01653g02025.1	sp|Q53MB8|TLPH_ORYSJ	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf04316g06016.1	sp|A5DQJ8|SIP5_PICGU	*-*-	Protein SIP5		
Niben101Scf01084g03004.1	sp|P23137|GRP1_TOBAC	*-*-	Glycine-rich protein	IPR010800 (Glycine rich protein)	
Niben101Scf15372g00003.1	AT4G09650.1	****	ATP synthase delta-subunit gene LENGTH=234	IPR000711 (ATPase, OSCP/delta subunit), IPR026015 (F1F0 ATP synthase OSCP/delta subunit, N-terminal domain)	GO:0015986 (ATP synthesis coupled proton transport), GO:0016020 (membrane), GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
Niben101Scf08178g00010.1	AT1G62780.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 94 Blast hits to 94 proteins in 35 species: Archae - 6; Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). LENGTH=237		
Niben101Scf01230g01009.1	gb|AAU89249.1|	*-*-	C1-like domain containing protein [Oryza sativa Japonica Group]		
Niben101Scf01376g04029.1	sp|O64517|MCA4_ARATH	***-	Metacaspase-4	IPR029030 (Caspase-like domain)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf02267g00013.1	sp|O82013|HSP21_SOLPE	*-*-	17.3 kDa class II heat shock protein	IPR008978 (HSP20-like chaperone)	
Niben101Scf04742g03023.1	sp|P49210|RL9_ORYSJ	*-*-	60S ribosomal protein L9	IPR000702 (Ribosomal protein L6)	GO:0003735 (structural constituent of ribosome), GO:0005840 (ribosome), GO:0006412 (translation), GO:0019843 (rRNA binding)
Niben101Scf12841g03016.1	tpg|DAA38934.1|	--*-	TPA: hypothetical protein ZEAMMB73_966096 [Zea mays]		
Niben101Scf03045g13003.1	AT5G14500.1	***-	aldose 1-epimerase family protein LENGTH=306	IPR008183 (Aldose 1-/Glucose-6-phosphate 1-epimerase), IPR011013 (Galactose mutarotase-like domain)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016853 (isomerase activity), GO:0030246 (carbohydrate binding)
Niben101Scf04639g15007.1	sp|Q9FZ70|FDL1_ARATH	*-*-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf01064g04008.1	sp|P25802|CYSP1_OSTOS	*-**	Cathepsin B-like cysteine proteinase 1	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site), IPR025661 (Cysteine peptidase, asparagine active site)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf01226g01003.1	AT5G27000.1	****	kinesin 4 LENGTH=987	IPR001715 (Calponin homology domain), IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein)	GO:0003777 (microtubule motor activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding)
Niben101Scf04304g02011.1			Unknown protein		
Niben101Ctg03836g00003.1	sp|Q4J8F8|PURL_SULAC	--*-	Phosphoribosylformylglycinamidine synthase subunit PurL		
Niben101Scf04909g00011.1	sp|Q2JPT2|TRPF_SYNJB	****	N-(5'-phosphoribosyl)anthranilate isomerase	IPR001240 (N-(5'phosphoribosyl) anthranilate isomerase (PRAI) like domain), IPR013785 (Aldolase-type TIM barrel)	GO:0003824 (catalytic activity), GO:0004640 (phosphoribosylanthranilate isomerase activity), GO:0006568 (tryptophan metabolic process), GO:0008152 (metabolic process)
Niben101Scf00551g04011.1	sp|Q9Y222|DMTF1_HUMAN	--**	Cyclin-D-binding Myb-like transcription factor 1	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00109g10008.1			Unknown protein		
Niben101Scf06200g00001.1	sp|Q40477|ERF4_TOBAC	*-**	Ethylene-responsive transcription factor 4	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf01653g01001.1	sp|Q39265|ZFP6_ARATH	--*-	Zinc finger protein 6	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf08195g03020.1	sp|Q15059|BRD3_HUMAN	*-*-	Bromodomain-containing protein 3	IPR001487 (Bromodomain)	GO:0005515 (protein binding)
Niben101Scf06799g02003.1	sp|B1MC86|PGK_MYCA9	*-**	Phosphoglycerate kinase	IPR001576 (Phosphoglycerate kinase)	GO:0004618 (phosphoglycerate kinase activity), GO:0006096 (glycolytic process)
Niben101Scf00505g01005.1	sp|Q84W91|C3H32_ARATH	***-	Zinc finger CCCH domain-containing protein 32	IPR000571 (Zinc finger, CCCH-type)	GO:0046872 (metal ion binding)
Niben101Scf11379g00011.1	sp|Q944N1|LHP1_SOLLC	***-	Chromo domain protein LHP1	IPR016197 (Chromo domain-like)	GO:0005634 (nucleus)
Niben101Scf04338g00003.1	emb|CDX74811.1|	*-*-	BnaA05g05570D [Brassica napus]		
Niben101Scf03147g01002.1	ref|NP_001059263.1|	***-	product [Oryza sativa Japonica Group]	IPR021825 (Protein of unknown function DUF3411, plant)	
Niben101Scf09962g02002.1	sp|Q9FZ70|FDL1_ARATH	--*-	F-box/FBD/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf00905g02005.1	AT2G43840.2	*-*-	UDP-glycosyltransferase 74 F1 LENGTH=449	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02187g00010.1	sp|Q8W575|CSN3_ARATH	***-	COP9 signalosome complex subunit 3	IPR000717 (Proteasome component (PCI) domain)	GO:0005515 (protein binding)
Niben101Scf05516g00009.1	sp|Q9SAK5|APL_ARATH	*-*-	Myb family transcription factor APL	IPR009057 (Homeodomain-like), IPR025756 (MYB-CC type transcription factor, LHEQLE-containing domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf03817g02001.1	sp|Q9SJE8|ALMT2_ARATH	****	Aluminum-activated malate transporter 2	IPR020966 (Aluminum-activated malate transporter)	GO:0015743 (malate transport)
Niben101Scf00734g00001.1	sp|Q9SS47|PUM4_ARATH	*-*-	Pumilio homolog 4	IPR016024 (Armadillo-type fold)	GO:0003723 (RNA binding), GO:0005488 (binding)
Niben101Scf10881g00059.1			Unknown protein		
Niben101Scf08819g00005.1	sp|Q8L868|E1311_ARATH	***-	Glucan endo-1,3-beta-glucosidase 11	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf03028g03020.1	sp|B3PWT4|RS14_RHIE6	--*-	30S ribosomal protein S14	IPR001209 (Ribosomal protein S14)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf11154g00024.1	sp|Q9SDZ9|PPAF2_IPOBA	****	Purple acid phosphatase 2	IPR003961 (Fibronectin type III), IPR008963 (Purple acid phosphatase-like, N-terminal), IPR025733 (Iron/zinc purple acid phosphatase-like C-terminal domain), IPR029052 (Metallo-dependent phosphatase-like)	GO:0003993 (acid phosphatase activity), GO:0005515 (protein binding), GO:0016787 (hydrolase activity), GO:0046872 (metal ion binding)
Niben101Scf00934g01007.1	sp|Q9M8J9|BPM2_ARATH	***-	BTB/POZ and MATH domain-containing protein 2	IPR008974 (TRAF-like), IPR011333 (BTB/POZ fold)	GO:0005515 (protein binding)
Niben101Scf03069g03001.1	AT2G41090.1	****	Calcium-binding EF-hand family protein LENGTH=191	IPR011992 (EF-hand domain pair)	GO:0005509 (calcium ion binding)
Niben101Scf03929g06006.1	sp|A4GGA5|RPOB_PHAVU	*-**	DNA-directed RNA polymerase subunit beta	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf00606g02015.1	sp|P14720|DFRA_PETHY	***-	Dihydroflavonol-4-reductase	IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR016040 (NAD(P)-binding domain)	GO:0003824 (catalytic activity), GO:0050662 (coenzyme binding)
Niben101Scf01317g01009.1			Unknown protein		
Niben101Scf02380g01009.1	sp|Q8NFI3|ENASE_HUMAN	*-**	Cytosolic endo-beta-N-acetylglucosaminidase	IPR005201 (Glycoside hydrolase, family 85)	GO:0005737 (cytoplasm), GO:0033925 (mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity)
Niben101Scf01171g03015.1	AT4G13930.1	****	serine hydroxymethyltransferase 4 LENGTH=471	IPR001085 (Serine hydroxymethyltransferase), IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0004372 (glycine hydroxymethyltransferase activity), GO:0006544 (glycine metabolic process), GO:0006563 (L-serine metabolic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf09928g01029.1	gb|KEH28576.1|	***-	Snf1-related kinase interactor 1, putative [Medicago truncatula]		
Niben101Scf34590g00006.1	AT1G37130.1	****	nitrate reductase 2 LENGTH=917	IPR001834 (NADH:cytochrome b5 reductase (CBR)), IPR008335 (Eukaryotic molybdopterin oxidoreductase), IPR014756 (Immunoglobulin E-set), IPR017938 (Riboflavin synthase-like beta-barrel)	GO:0005506 (iron ion binding), GO:0009055 (electron carrier activity), GO:0016491 (oxidoreductase activity), GO:0020037 (heme binding), GO:0030151 (molybdenum ion binding), GO:0042128 (nitrate assimilation), GO:0043546 (molybdopterin cofactor binding), GO:0046857 (oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor), GO:0046872 (metal ion binding), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01520g07010.1	emb|CDX92548.1|	--*-	BnaA10g15870D [Brassica napus]		
Niben101Scf02039g00006.1	sp|Q9C5S9|CRK6_ARATH	*-**	Cysteine-rich receptor-like protein kinase 6	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf07987g01005.1	gb|AGC78952.1|	*-*-	NADH dehydrogenase subunit 4 (mitochondrion) [Vicia faba]		
Niben101Scf19057g00004.1	sp|Q39002|TLC1_ARATH	--*-	ADP,ATP carrier protein 1, chloroplastic		
Niben101Scf02044g05023.1	sp|Q9S9Q9|Y1044_ARATH	*-*-	BTB/POZ domain-containing protein	IPR029959 (Root phototropism protein 3-like)	GO:0016567 (protein ubiquitination)
Niben101Scf07638g04002.1	sp|Q8VZC9|VPS25_ARATH	***-	Vacuolar protein sorting-associated protein 25	IPR008570 (ESCRT-II complex, vps25 subunit), IPR011991 (Winged helix-turn-helix DNA-binding domain)	
Niben101Scf03595g11002.1	ref|XP_002521651.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF40758.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf08515g00021.1	sp|Q2YDU3|OTUD5_RAT	*-*-	OTU domain-containing protein 5	IPR003323 (Ovarian tumour, otubain)	
Niben101Scf01091g00014.1	gb|ACG42565.1|	***-	calcium homeostasis regulator CHoR1 [Zea mays]		
Niben101Scf04926g00002.1	sp|Q9FJN9|PABN2_ARATH	****	Polyadenylate-binding protein 2	IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding)
Niben101Scf01295g00008.1	ref|WP_017708190.1|	***-	oxidoreductase [Pseudomonas syringae]	IPR016040 (NAD(P)-binding domain)	
Niben101Scf08777g01001.1	sp|Q05B63|TRM11_BOVIN	--*-	tRNA (guanine(10)-N2)-methyltransferase homolog		
Niben101Scf03679g01006.1	sp|Q2J429|GLO2_RHOP2	****	Hydroxyacylglutathione hydrolase	IPR017782 (Hydroxyacylglutathione hydrolase)	GO:0004416 (hydroxyacylglutathione hydrolase activity), GO:0006750 (glutathione biosynthetic process), GO:0008270 (zinc ion binding)
Niben101Scf04270g00008.1	sp|A7PQW3|E13B_VITVI	***-	Glucan endo-1,3-beta-glucosidase	IPR000490 (Glycoside hydrolase, family 17), IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf00721g00011.1	sp|Q9SWE7|VATE_CITLI	****	V-type proton ATPase subunit E	IPR002842 (ATPase, V1/A1 complex, subunit E)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain), GO:0046961 (proton-transporting ATPase activity, rotational mechanism)
Niben101Scf01023g07005.1			Unknown protein		
Niben101Scf08091g00009.1	AT4G38840.1	***-	SAUR-like auxin-responsive protein family LENGTH=99	IPR003676 (Auxin-induced protein, ARG7)	
Niben101Scf10498g00010.1	sp|Q05AL1|ARMC8_DANRE	*-*-	Armadillo repeat-containing protein 8	IPR016024 (Armadillo-type fold)	GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02074g01006.1	sp|P09003|MI25_TOBAC	*-**	ATP synthase protein MI25	IPR008688 (ATPase, F0 complex, B chain/subunit B/MI25)	GO:0000276 (mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)), GO:0015078 (hydrogen ion transmembrane transporter activity), GO:0015986 (ATP synthesis coupled proton transport)
Niben101Scf00509g00020.1	sp|Q61116|ZN235_MOUSE	--*-	Zinc finger protein 235	IPR013087 (Zinc finger C2H2-type/integrase DNA-binding domain)	GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf03432g01015.1	sp|Q9SH60|PP103_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf08680g02019.1	sp|Q9H0X6|RN208_HUMAN	--*-	RING finger protein 208	IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027370 (RING-type zinc-finger, LisH dimerisation motif)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf10608g00009.1	sp|P33121|ACSL1_HUMAN	*-*-	Long-chain-fatty-acid--CoA ligase 1	IPR000873 (AMP-dependent synthetase/ligase)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process)
Niben101Scf06439g02002.1	gb|ABD32321.2|	--*-	Ribonuclease H [Medicago truncatula]	IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding)
Niben101Scf00160g03004.1			Unknown protein		
Niben101Scf00225g07018.1	sp|B9L3S8|FTSH2_THERP	--**	ATP-dependent zinc metalloprotease FtsH 2	IPR003959 (ATPase, AAA-type, core), IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding)
Niben101Scf09433g01009.1	gb|KEH18769.1|	***-	ABIL1-like protein [Medicago truncatula]	IPR028457 (ABI family)	
Niben101Scf01234g01008.1	sp|O81263|KITH_ORYSJ	****	Thymidine kinase	IPR001267 (Thymidine kinase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0004797 (thymidine kinase activity), GO:0005524 (ATP binding)
Niben101Scf07466g03006.1	sp|Q54TH4|GET4_DICDI	*-*-	Golgi to ER traffic protein 4 homolog	IPR007317 (Uncharacterised protein family UPF0363)	
Niben101Scf08635g05012.1	sp|Q9ZTA1|AOP3C_ARATH	*-**	2-oxoglutarate-dependent dioxygenase AOP3	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf05060g00005.1	emb|CDX78617.1|	-**-	BnaA03g05290D [Brassica napus]		
Niben101Scf03094g03001.1	AT1G30040.1	***-	gibberellin 2-oxidase LENGTH=341	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf03801g03006.1	ref|XP_002524242.1|	****	zinc ion binding protein, putative [Ricinus communis] gb|EEF38166.1| zinc ion binding protein, putative [Ricinus communis]	IPR001781 (Zinc finger, LIM-type), IPR022087 (Protein DA1 like)	GO:0008270 (zinc ion binding)
Niben101Scf11480g01007.1	sp|Q9SB58|ZDH19_ARATH	--*-	Protein S-acyltransferase 8		
Niben101Scf01993g05016.1	sp|P55258|RAB8A_MOUSE	***-	Ras-related protein Rab-8A	IPR001806 (Small GTPase superfamily), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf07226g05005.1	emb|CDY68022.1|	*-*-	BnaC01g41000D [Brassica napus]		
Niben101Scf01365g00010.1	sp|B0V2N1|PTPRS_MOUSE	*-**	Receptor-type tyrosine-protein phosphatase S	IPR029021 (Protein-tyrosine phosphatase-like)	GO:0004725 (protein tyrosine phosphatase activity), GO:0006470 (protein dephosphorylation), GO:0016311 (dephosphorylation), GO:0016791 (phosphatase activity)
Niben101Scf04674g03004.1	sp|Q6PBD6|WDR61_XENTR	*-*-	WD repeat-containing protein 61	IPR015943 (WD40/YVTN repeat-like-containing domain)	GO:0005515 (protein binding)
Niben101Scf05680g00026.1	sp|Q9LS72|PP261_ARATH	*-*-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat)	
Niben101Scf03330g01001.1	dbj|BAK41511.1|	*-*-	polyprotein [Arabidopsis thaliana]		
Niben101Scf04003g04001.1	AT4G36945.1	***-	PLC-like phosphodiesterases superfamily protein LENGTH=408	IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain)	GO:0006629 (lipid metabolic process), GO:0008081 (phosphoric diester hydrolase activity)
Niben101Scf04727g07004.1	ref|XP_002532210.1|	****	Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis] gb|EEF30179.1| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]	IPR011192 (Rubisco  LSMT methyltransferase, plant)	GO:0005515 (protein binding), GO:0009507 (chloroplast), GO:0030785 ([ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity)
Niben101Scf07913g00003.1	sp|Q93ZH9|HHP1_ARATH	*-*-	Heptahelical transmembrane protein 1	IPR004254 (AdipoR/Haemolysin-III-related)	GO:0016021 (integral component of membrane)
Niben101Scf02405g05020.1	sp|P0CQ86|DBP5_CRYNJ	****	ATP-dependent RNA helicase DBP5	IPR001650 (Helicase, C-terminal), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR014014 (RNA helicase, DEAD-box type, Q motif), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003676 (nucleic acid binding), GO:0005524 (ATP binding)
Niben101Scf04763g02021.1	AT5G39410.1	***-	Saccharopine dehydrogenase LENGTH=454	IPR016040 (NAD(P)-binding domain)	
Niben101Scf16089g00012.1	sp|P98204|ALA1_ARATH	****	Phospholipid-transporting ATPase 1	IPR001757 (P-type ATPase), IPR023214 (HAD-like domain)	GO:0000166 (nucleotide binding), GO:0000287 (magnesium ion binding), GO:0004012 (phospholipid-translocating ATPase activity), GO:0005524 (ATP binding), GO:0015914 (phospholipid transport), GO:0016021 (integral component of membrane), GO:0046872 (metal ion binding)
Niben101Scf05078g05015.1	sp|P56884|GLND_RHIME	*-*-	Bifunctional uridylyltransferase/uridylyl-removing enzyme	IPR002912 (ACT domain)	GO:0008152 (metabolic process), GO:0016597 (amino acid binding)
Niben101Scf04727g01004.1	AT3G22960.1	*-**	Pyruvate kinase family protein LENGTH=596	IPR001697 (Pyruvate kinase)	GO:0000287 (magnesium ion binding), GO:0003824 (catalytic activity), GO:0004743 (pyruvate kinase activity), GO:0006096 (glycolytic process), GO:0030955 (potassium ion binding)
Niben101Scf02772g04004.1	gb|AFJ53042.1|	*-*-	UDP-glycosyltransferase 1 [Linum usitatissimum]	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf10737g01014.1			Unknown protein		
Niben101Scf01937g01004.1	sp|O65806|MGN_EUPLA	***-	Protein mago nashi homolog	IPR004023 (Mago nashi protein)	GO:0005634 (nucleus)
Niben101Scf23814g00041.1	sp|Q9Y584|TIM22_HUMAN	--*-	Mitochondrial import inner membrane translocase subunit Tim22	IPR003397 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24)	
Niben101Scf00340g04003.1	gb|AAG37451.1|	***-	seed maturation protein LEA 4 [Glycine tomentella]		
Niben101Scf02180g00007.1	sp|A5VA00|MUTS_SPHWW	--*-	DNA mismatch repair protein MutS		
Niben101Scf05002g00005.1	sp|Q0WQM8|FB58_ARATH	--*-	F-box protein	IPR013187 (F-box associated domain, type 3)	
Niben101Scf31793g00003.1	sp|O23044|PER3_ARATH	****	Peroxidase 3	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf08465g04006.1	AT5G16610.2	*-*-	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). LENGTH=673		
Niben101Scf01326g11012.1	sp|P47735|RLK5_ARATH	****	Receptor-like protein kinase 5	IPR001611 (Leucine-rich repeat), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4)	GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04568g00002.1	gb|KEH42602.1|	--*-	GRF zinc finger protein [Medicago truncatula]		
Niben101Scf10968g00005.1	emb|CAE05840.2|	*-*-	OSJNBa0091C07.2 [Oryza sativa Japonica Group]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf04368g00004.1	sp|Q9ZW33|TIM10_ARATH	****	Mitochondrial import inner membrane translocase subunit TIM10	IPR004217 (Tim10/DDP family zinc finger), IPR027247 (Mitochondrial import inner membrane translocase subunit Tim10/Tim12)	GO:0045039 (protein import into mitochondrial inner membrane)
Niben101Scf06542g00006.1	AT5G16990.1	****	Zinc-binding dehydrogenase family protein LENGTH=343	IPR002085 (Alcohol dehydrogenase superfamily, zinc-type), IPR016040 (NAD(P)-binding domain), IPR020843 (Polyketide synthase, enoylreductase domain)	GO:0008270 (zinc ion binding), GO:0016491 (oxidoreductase activity), GO:0055114 (oxidation-reduction process)
Niben101Scf02662g00002.1	gb|AGB85016.1|	*-*-	arginine/serine-rich 45 protein [Nicotiana tabacum]		
Niben101Scf12373g01004.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00095g00003.1	tpg|DAA45095.1|	*-*-	TPA: hypothetical protein ZEAMMB73_908552 [Zea mays]		
Niben101Scf05654g00005.1	sp|P15688|NU2M_BETVU	*-*-	NADH-ubiquinone oxidoreductase chain 2		
Niben101Scf06216g00004.1	ref|XP_002516081.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF46501.1| conserved hypothetical protein [Ricinus communis]		
Niben101Ctg15460g00004.1	sp|Q2J7E7|MDH_FRASC	****	Malate dehydrogenase	IPR001557 (L-lactate/malate dehydrogenase)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0006108 (malate metabolic process), GO:0016491 (oxidoreductase activity), GO:0016615 (malate dehydrogenase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0030060 (L-malate dehydrogenase activity), GO:0044262 (cellular carbohydrate metabolic process), GO:0055114 (oxidation-reduction process)
Niben101Scf02176g00005.1	sp|O75208|COQ9_HUMAN	*-**	Ubiquinone biosynthesis protein COQ9, mitochondrial	IPR012762 (Ubiquinone biosynthesis protein COQ9)	GO:0006744 (ubiquinone biosynthetic process)
Niben101Scf09411g00007.1	ref|XP_003609661.1|	*-*-	CCAAT/enhancer-binding protein zeta [Medicago truncatula]		
Niben101Scf20557g00001.1	AT3G22104.1	***-	Phototropic-responsive NPH3 family protein LENGTH=506	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf00010g01005.1	emb|CDY43227.1|	***-	BnaC05g48200D [Brassica napus]		
Niben101Scf02976g00007.1	sp|P43510|CPR6_CAEEL	****	Cathepsin B-like cysteine proteinase 6	IPR013128 (Peptidase C1A), IPR025660 (Cysteine peptidase, histidine active site)	GO:0004197 (cysteine-type endopeptidase activity), GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity), GO:0050790 (regulation of catalytic activity)
Niben101Scf06305g02006.1	sp|Q6DJC8|TM53B_XENLA	***-	Transmembrane protein 53-B	IPR008547 (Protein of unknown function DUF829, TMEM53), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf05480g01004.1			Unknown protein		
Niben101Scf11361g00005.1	sp|A0KWN7|AROA_SHESA	****	3-phosphoshikimate 1-carboxyvinyltransferase	IPR006264 (3-phosphoshikimate 1-carboxyvinyltransferase), IPR013792 (RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta), IPR023193 (3-phosphoshikimate 1-carboxyvinyltransferase, conserved site)	GO:0003824 (catalytic activity), GO:0003866 (3-phosphoshikimate 1-carboxyvinyltransferase activity), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups)
Niben101Scf00355g04013.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR011009 (Protein kinase-like domain), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf02358g03019.1	sp|Q2RKX8|LEPA_MOOTA	***-	Elongation factor 4	IPR005225 (Small GTP-binding protein domain), IPR006297 (Elongation factor 4), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding)
Niben101Scf00151g07009.1	ref|XP_002523935.1|	****	hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gb|EEF38422.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	IPR002772 (Glycoside hydrolase family 3 C-terminal domain), IPR017853 (Glycoside hydrolase superfamily), IPR026892 (Glycoside hydrolase family 3)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf07166g00009.1	ref|WP_011387494.1|	***-	lipoprotein VmcF [Mycoplasma capricolum] ref|YP_424598.1| lipoprotein VmcF [Mycoplasma capricolum subsp. capricolum ATCC 27343] gb|ABC01374.1| lipoprotein (VmcF) [Mycoplasma capricolum subsp. capricolum ATCC 27343] gb|ABF29691.1| VmcF [Mycoplasma capricolum subsp. capricolum]		
Niben101Scf03254g12008.1	sp|Q9LVX1|C3H41_ARATH	***-	Zinc finger CCCH domain-containing protein 41	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf00358g00006.1	sp|Q5SPL2|PHF12_MOUSE	--*-	PHD finger protein 12	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf24868g00004.1	sp|P63162|RSMN_HUMAN	*-*-	Small nuclear ribonucleoprotein-associated protein N	IPR010920 (Like-Sm (LSM) domain), IPR017131 (Small ribonucleoprotein associated, SmB/SmN)	
Niben101Scf01237g06003.1	sp|Q6K7E6|ERF1_ORYSJ	*-**	Ethylene-responsive transcription factor 1	IPR016177 (DNA-binding domain)	GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf03779g07006.1	sp|Q6ICL7|S35E4_HUMAN	***-	Solute carrier family 35 member E4	IPR004853 (Triose-phosphate transporter domain)	
Niben101Scf14837g02011.1	sp|P05100|3MG1_ECOLI	*-**	DNA-3-methyladenine glycosylase 1	IPR005019 (Methyladenine glycosylase)	GO:0003824 (catalytic activity), GO:0006281 (DNA repair), GO:0006284 (base-excision repair), GO:0008725 (DNA-3-methyladenine glycosylase activity)
Niben101Scf02736g05001.1	sp|Q9LUE2|TPS18_ARATH	*-**	Terpenoid synthase 18	IPR008949 (Isoprenoid synthase domain)	GO:0000287 (magnesium ion binding), GO:0010333 (terpene synthase activity), GO:0016829 (lyase activity)
Niben101Scf01538g00024.1	sp|Q9Z8I3|6PGD_CHLPN	*-**	6-phosphogluconate dehydrogenase, decarboxylating	IPR008927 (6-phosphogluconate dehydrogenase, C-terminal-like), IPR015815 (Hydroxy monocarboxylic acid anion dehydrogenase, HIBADH-type), IPR016040 (NAD(P)-binding domain)	GO:0004616 (phosphogluconate dehydrogenase (decarboxylating) activity), GO:0006098 (pentose-phosphate shunt), GO:0016491 (oxidoreductase activity), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0050662 (coenzyme binding), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process)
Niben101Scf04608g02004.1	AT5G04820.1	***-	ovate family protein 13 LENGTH=260	IPR006458 (Ovate  protein family, C-terminal)	
Niben101Scf05676g00001.1	ref|XP_002530720.1|	-**-	Protein SCRL10 precursor, putative [Ricinus communis] gb|EEF31674.1| Protein SCRL10 precursor, putative [Ricinus communis]		
Niben101Scf04400g02006.1	sp|P46551|CDK12_CAEEL	*-**	Cyclin-dependent kinase 12	IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06164g01028.1	AT5G62840.1	*-*-	Phosphoglycerate mutase family protein LENGTH=297	IPR029033 (Histidine phosphatase superfamily)	
Niben101Scf12589g00009.1	sp|Q8Z229|GLPG_SALTI	*-*-	Rhomboid protease GlpG	IPR009060 (UBA-like), IPR022764 (Peptidase S54, rhomboid domain)	GO:0004252 (serine-type endopeptidase activity), GO:0005515 (protein binding), GO:0016021 (integral component of membrane)
Niben101Scf16254g00005.1	gb|ACE79448.1|	*-*-	NBS-coding resistance gene analog [Nicotiana tabacum]	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf02232g00001.1	AT3G28740.1	*-*-	Cytochrome P450 superfamily protein LENGTH=509	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf03907g00006.1	sp|Q2YSD6|CLPC_STAAB	*-*-	ATP-dependent Clp protease ATP-binding subunit ClpC	IPR004176 (Clp, N-terminal), IPR023150 (Double Clp-N motif)	GO:0019538 (protein metabolic process)
Niben101Scf06221g04080.1			Unknown protein		
Niben101Scf00899g02001.1	sp|O65740|DEF2_CAPAN	***-	Defensin J1-2	IPR003614 (Knottin, scorpion toxin-like)	GO:0006952 (defense response)
Niben101Scf13185g02018.1	sp|Q9SFC7|FB135_ARATH	*-*-	F-box protein	IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain)	GO:0005515 (protein binding)
Niben101Scf01635g05017.1	AT5G57660.1	***-	CONSTANS-like 5 LENGTH=355	IPR000315 (Zinc finger, B-box), IPR010402 (CCT domain)	GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0008270 (zinc ion binding)
Niben101Scf06968g00009.1	sp|Q42484|RPS2_ARATH	*-*-	Disease resistance protein RPS2		
Niben101Scf01466g00001.1	sp|Q58DW6|RAB25_BOVIN	***-	Ras-related protein Rab-25	IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane)
Niben101Scf11795g00013.1	sp|P49842|STK19_HUMAN	*-*-	Serine/threonine-protein kinase 19	IPR018865 (Serine-threonine protein kinase 19)	
Niben101Scf16585g02014.1	sp|Q9LIG2|RLK6_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf04220g03010.1	sp|Q9LXG3|PER56_ARATH	****	Peroxidase 56	IPR010255 (Haem peroxidase)	GO:0004601 (peroxidase activity), GO:0006979 (response to oxidative stress), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf00133g02002.1	gb|AAD19786.1|	*-*-	Mutator-like transposase [Arabidopsis thaliana]	IPR018289 (MULE transposase domain)	
Niben101Scf01690g00004.1	sp|Q5PP37|ATXR2_ARATH	*-*-	Histone-lysine N-methyltransferase ATXR2	IPR001214 (SET domain)	GO:0005515 (protein binding)
Niben101Scf24355g00005.1	sp|O48651|ERG1_PANGI	****	Squalene monooxygenase	IPR003042 (Aromatic-ring hydroxylase-like)	GO:0004506 (squalene monooxygenase activity), GO:0008152 (metabolic process), GO:0016021 (integral component of membrane), GO:0016491 (oxidoreductase activity), GO:0050660 (flavin adenine dinucleotide binding), GO:0055114 (oxidation-reduction process)
Niben101Scf05395g03017.1	ref|WP_017311897.1|	****	iron ABC transporter substrate-binding protein [Fischerella sp. PCC 9339]	IPR012675 (Beta-grasp domain)	GO:0009055 (electron carrier activity), GO:0051536 (iron-sulfur cluster binding)
Niben101Scf00151g10020.1	ref|XP_002514181.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF48135.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01188g00024.1	sp|Q8LC53|EPF2_ARATH	***-	Protein EPIDERMAL PATTERNING FACTOR 2		
Niben101Scf06392g03002.1			Unknown protein		
Niben101Scf11895g03027.1	sp|Q5E9R3|EHD1_BOVIN	***-	EH domain-containing protein 1	IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005525 (GTP binding)
Niben101Scf03309g05005.1	sp|A2WT95|PLA1_ORYSI	***-	Phospholipase A1-II 1	IPR029058 (Alpha/Beta hydrolase fold)	GO:0006629 (lipid metabolic process)
Niben101Scf08130g00015.1	sp|Q9SR36|GSTU8_ARATH	***-	Glutathione S-transferase U8	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf01395g02012.1	gb|AAM77369.1|AF521301_1	***-	phosphatidylinositol synthase [Brassica napus]		
Niben101Scf01350g03010.1			Unknown protein		
Niben101Scf04083g04043.1	ref|XP_007039097.1|	-**-	Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase, putative [Theobroma cacao] gb|EOY23598.1| Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase, putative [Theobroma cacao]		
Niben101Scf01228g02010.1			Unknown protein		
Niben101Scf09708g10002.1	sp|Q9ZNU6|DET1_SOLLC	***-	Light-mediated development protein DET1	IPR019138 (De-etiolated protein 1, Det1)	
Niben101Scf02805g01014.1	sp|Q9ZWJ9|ARR2_ARATH	*-*-	Two-component response regulator ARR2	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf00158g04018.1	AT5G04330.1	***-	Cytochrome P450 superfamily protein LENGTH=512	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf01768g01001.1	AT4G38520.1	****	Protein phosphatase 2C family protein LENGTH=400	IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C)	GO:0003824 (catalytic activity), GO:0004722 (protein serine/threonine phosphatase activity), GO:0006470 (protein dephosphorylation)
Niben101Scf04786g01002.1			Unknown protein		
Niben101Scf13221g00001.1	AT3G26830.1	*-*-	Cytochrome P450 superfamily protein LENGTH=490	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf02622g01002.1	ref|NP_001154329.1|	--*-	CC-NBS-LRR class disease resistance protein [Arabidopsis thaliana] gb|AEE28863.1| CC-NBS-LRR class disease resistance protein [Arabidopsis thaliana]		
Niben101Scf02145g01001.1	gb|ABD32666.1|	***-	conserved hypothetical protein [Medicago truncatula] gb|AES64401.2| hypothetical protein [Medicago truncatula]		
Niben101Scf12157g00001.1	sp|Q55EJ3|NAT10_DICDI	*-**	N-acetyltransferase 10 homolog	IPR000182 (GNAT domain), IPR007807 (Helicase domain)	GO:0008080 (N-acetyltransferase activity)
Niben101Scf07709g01027.1	sp|Q9XII1|PDV2_ARATH	***-	Plastid division protein PDV2		
Niben101Scf27913g00004.1	sp|A4QK10|RPOB_ARAHI	*-**	DNA-directed RNA polymerase subunit beta	IPR015712 (DNA-directed RNA polymerase, subunit 2)	GO:0003677 (DNA binding), GO:0003899 (DNA-directed RNA polymerase activity), GO:0006351 (transcription, DNA-templated), GO:0032549 (ribonucleoside binding)
Niben101Scf07880g02004.1			Unknown protein		
Niben101Ctg11776g00001.1	AT5G66940.1	*-**	Dof-type zinc finger DNA-binding family protein LENGTH=225	IPR003851 (Zinc finger, Dof-type)	GO:0003677 (DNA binding), GO:0006355 (regulation of transcription, DNA-templated)
Niben101Scf02245g02006.1			Unknown protein		
Niben101Scf10031g02004.1	sp|O80674|BH106_ARATH	***-	Transcription factor bHLH106	IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)	GO:0046983 (protein dimerization activity)
Niben101Scf06769g02027.1			Unknown protein		
Niben101Scf00495g01024.1			Unknown protein		
Niben101Scf15677g00007.1	emb|CDY49321.1|	***-	BnaC03g66930D [Brassica napus]		
Niben101Scf02652g01033.1	sp|Q6YXM7|CLPP_PHYPA	***-	ATP-dependent Clp protease proteolytic subunit	IPR023562 (Clp protease proteolytic subunit /Translocation-enhancing protein TepA), IPR029045 (ClpP/crotonase-like domain)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Ctg07164g00002.1	emb|CDY64711.1|	*-*-	BnaA06g38700D [Brassica napus]		
Niben101Scf03045g07001.1	sp|A7Z4M9|SUCC_BACA2	***-	Succinyl-CoA ligase [ADP-forming] subunit beta	IPR013650 (ATP-grasp fold, succinyl-CoA synthetase-type), IPR016102 (Succinyl-CoA synthetase-like)	GO:0005524 (ATP binding)
Niben101Scf01559g01003.1	sp|Q9ZV56|CCT1_ARATH	***-	Choline-phosphate cytidylyltransferase 1	IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process)
Niben101Scf01310g06010.1	ref|WP_014659922.1|	--*-	methionyl-tRNA synthetase [Helicobacter cetorum] ref|YP_006221651.1| methionyl-tRNA synthetase [Helicobacter cetorum MIT 99-5656] gb|AFI06441.1| methionyl-tRNA synthetase [Helicobacter cetorum MIT 99-5656]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf13421g00007.1	sp|Q9VQX4|PNCB_DROME	****	Nicotinate phosphoribosyltransferase	IPR002638 (Quinolinate phosphoribosyl transferase, C-terminal), IPR007229 (Nicotinate phosphoribosyltransferase family)	GO:0004514 (nicotinate-nucleotide diphosphorylase (carboxylating) activity), GO:0009435 (NAD biosynthetic process)
Niben101Scf00898g00005.1	sp|Q9SSG3|HIPL1_ARATH	***-	HIPL1 protein	IPR011042 (Six-bladed beta-propeller, TolB-like)	GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016901 (oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor), GO:0048038 (quinone binding)
Niben101Scf05382g03007.1	ref|XP_002527462.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF34954.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf04207g01005.1	sp|Q9WTZ2|MBTP1_MOUSE	*-*-	Membrane-bound transcription factor site-1 protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf33617g00001.1	sp|C0RF52|ATPA_BRUMB	*-**	ATP synthase subunit alpha	IPR000793 (ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal)	GO:0015991 (ATP hydrolysis coupled proton transport), GO:0016820 (hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances), GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain)
Niben101Scf02164g04001.1	AT1G70320.1	*-**	ubiquitin-protein ligase 2 LENGTH=3658	IPR000569 (HECT), IPR003903 (Ubiquitin interacting motif), IPR009060 (UBA-like), IPR010309 (E3 ubiquitin ligase, domain of unknown function DUF908), IPR016024 (Armadillo-type fold), IPR025527 (Domain of unknown function DUF4414)	GO:0004842 (ubiquitin-protein transferase activity), GO:0005488 (binding), GO:0005515 (protein binding)
Niben101Scf02182g09002.1	ref|XP_002525515.1|	*-*-	conserved hypothetical protein [Ricinus communis] gb|EEF36873.1| conserved hypothetical protein [Ricinus communis]	IPR009902 (Protein of unknown function DUF1442)	
Niben101Scf02033g02019.1	AT5G51740.1	****	Peptidase family M48 family protein LENGTH=442	IPR001915 (Peptidase M48)	GO:0004222 (metalloendopeptidase activity), GO:0006508 (proteolysis), GO:0016020 (membrane)
Niben101Scf00786g02013.1	gb|AAU90302.2|	--*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]		
Niben101Scf05943g00001.1	AT5G66560.1	***-	Phototropic-responsive NPH3 family protein LENGTH=668	IPR011333 (BTB/POZ fold), IPR027356 (NPH3 domain)	GO:0005515 (protein binding)
Niben101Scf22171g00007.1	ref|XP_007035408.1|	***-	PH-response transcription factor pacC/RIM101 isoform 1 [Theobroma cacao] gb|EOY06334.1| PH-response transcription factor pacC/RIM101 isoform 1 [Theobroma cacao]	IPR030184 (WAT1-related protein)	GO:0016021 (integral component of membrane), GO:0022857 (transmembrane transporter activity)
Niben101Scf03561g00002.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00153g00023.1	sp|Q93Y09|SCP45_ARATH	****	Serine carboxypeptidase-like 45	IPR001563 (Peptidase S10, serine carboxypeptidase), IPR029058 (Alpha/Beta hydrolase fold)	GO:0004185 (serine-type carboxypeptidase activity), GO:0006508 (proteolysis)
Niben101Scf01133g16006.1	ref|NP_182187.2|	--*-	protein TILLER ANGLE CONTROL 1 [Arabidopsis thaliana] gb|ABE65910.1| hypothetical protein [Arabidopsis thaliana] gb|AEC10732.1| uncharacterized protein [Arabidopsis thaliana]		
Niben101Scf37553g00001.1	sp|Q08DI6|RNF11_BOVIN	*-*-	RING finger protein 11	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf05881g02007.1	sp|F4JGZ1|MED16_ARATH	***-	Mediator of RNA polymerase II transcription subunit 16		
Niben101Scf08304g06006.1			Unknown protein		
Niben101Scf05469g03004.1	sp|Q9S7R3|LSH10_ARATH	***-	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	IPR006936 (ALOG domain)	
Niben101Scf10575g00024.1	sp|Q7WTR3|MDTK_ERWAM	***-	Multidrug resistance protein MdtK	IPR002528 (Multi antimicrobial extrusion protein)	GO:0006855 (drug transmembrane transport), GO:0015238 (drug transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf03170g00001.1	ref|WP_020769012.1|	*-*-	alpha/beta hydrolase family protein [Lept [Leptospira sp. B5-022]	IPR016969 (Uncharacterised conserved protein UCP031088, alpha/beta hydrolase, At1g15070), IPR029058 (Alpha/Beta hydrolase fold)	
Niben101Scf08195g03021.1	AT4G25310.1	****	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein LENGTH=353	IPR005123 (Oxoglutarate/iron-dependent dioxygenase), IPR026992 (Non-haem dioxygenase N-terminal domain), IPR027443 (Isopenicillin N synthase-like)	GO:0016491 (oxidoreductase activity), GO:0016706 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors), GO:0055114 (oxidation-reduction process)
Niben101Scf15373g00013.1	AT5G11850.1	*-**	Protein kinase superfamily protein LENGTH=880	IPR000270 (Phox/Bem1p), IPR011009 (Protein kinase-like domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf06799g02002.1	sp|P40924|PGK_BACSU	*-**	Phosphoglycerate kinase	IPR001576 (Phosphoglycerate kinase)	GO:0004618 (phosphoglycerate kinase activity), GO:0006096 (glycolytic process)
Niben101Scf01395g01014.1	AT4G20880.1	*-*-	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) LENGTH=405		
Niben101Scf04607g06011.1	AT1G10530.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=166	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf03757g06011.1			Unknown protein		
Niben101Scf01478g05006.1	sp|Q9SX20|PTR18_ARATH	***-	Protein NRT1/ PTR FAMILY 3.1	IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane)
Niben101Scf05301g05003.1	ref|XP_003594059.1|	***-	Baculoviral IAP repeat-containing protein [Medicago truncatula]	IPR013083 (Zinc finger, RING/FYVE/PHD-type)	GO:0005515 (protein binding), GO:0008270 (zinc ion binding)
Niben101Scf00180g07008.1	gb|AES69004.2|	*-*-	disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula]	IPR000157 (Toll/interleukin-1 receptor homology (TIR) domain)	GO:0005515 (protein binding), GO:0007165 (signal transduction)
Niben101Scf08552g00014.1			Unknown protein		
Niben101Scf03993g06007.1	AT5G47390.1	*-*-	myb-like transcription factor family protein LENGTH=365	IPR009057 (Homeodomain-like)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding)
Niben101Scf04558g02010.1	sp|Q92F77|ISPE_LISIN	*-**	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	IPR004424 (4-diphosphocytidyl-2C-methyl-D-erythritol kinase)	GO:0005524 (ATP binding), GO:0016114 (terpenoid biosynthetic process), GO:0050515 (4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity)
Niben101Scf07162g03013.1	sp|Q9SI78|PPR93_ARATH	--*-	Pentatricopeptide repeat-containing protein		
Niben101Scf05044g04027.1	AT1G15440.1	***-	periodic tryptophan protein 2 LENGTH=900	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR020472 (G-protein beta WD-40 repeat), IPR027145 (Periodic tryptophan protein 2)	GO:0005515 (protein binding)
Niben101Scf04639g15006.1	sp|Q9FZ70|FDL1_ARATH	--*-	F-box/FBD/LRR-repeat protein		
Niben101Scf04742g03022.1	sp|A7RUD5|NUBP1_NEMVE	****	Cytosolic Fe-S cluster assembly factor NUBP1 homolog	IPR019591 (Mrp/NBP35 ATP-binding protein), IPR025669 (AAA domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0016226 (iron-sulfur cluster assembly), GO:0051536 (iron-sulfur cluster binding), GO:0051539 (4 iron, 4 sulfur cluster binding)
Niben101Scf01465g00003.1	sp|Q18G90|RL1_HALWD	****	50S ribosomal protein L1	IPR023673 (Ribosomal protein L1, conserved site), IPR023674 (Ribosomal protein L1-like), IPR028364 (Ribosomal protein L1/ribosomal biogenesis protein)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0006412 (translation), GO:0015934 (large ribosomal subunit)
Niben101Scf02709g03020.1	sp|Q038N5|DNAJ_LACC3	*-*-	Chaperone protein DnaJ	IPR001623 (DnaJ domain)	
Niben101Scf00168g05004.1	sp|O80568|ITPK4_ARATH	*-*-	Inositol-tetrakisphosphate 1-kinase 4		
Niben101Scf00285g02003.1	sp|P14903|FSPM_SOLLC	-**-	Fruit-specific protein	IPR004231 (Carboxypeptidase A inhibitor-like)	
Niben101Scf02751g02006.1	AT1G22400.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=489	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf05439g02032.1			Unknown protein		
Niben101Scf02849g03003.1	sp|Q9FKZ3|LBD36_ARATH	*-*-	LOB domain-containing protein 36	IPR004883 (Lateral organ boundaries, LOB)	
Niben101Scf04675g01002.1	AT2G25910.2	****	3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein LENGTH=342	IPR004087 (K Homology domain), IPR012337 (Ribonuclease H-like domain)	GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008408 (3'-5' exonuclease activity)
Niben101Scf03701g01013.1	sp|Q9ZSY8|IAA27_ARATH	***-	Auxin-responsive protein IAA27	IPR003311 (AUX/IAA protein)	GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity)
Niben101Scf03434g01013.1	sp|P19224|UD16_HUMAN	*-*-	UDP-glucuronosyltransferase 1-6	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf23305g01016.1	gb|AAU90304.1|	*-*-	MuDR family transposase containing protein [Solanum demissum]		
Niben101Scf04417g00005.1	sp|Q8K0E7|SERC2_MOUSE	***-	Serine incorporator 2	IPR005016 (Serine incorporator/TMS membrane protein)	GO:0016020 (membrane)
Niben101Scf00245g03004.1	sp|P27521|CA4_ARATH	***-	Chlorophyll a-b binding protein 4, chloroplastic	IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)	GO:0009765 (photosynthesis, light harvesting), GO:0016020 (membrane)
Niben101Scf01063g11014.1	sp|Q4KJB2|MSBA_PSEF5	*-**	Lipid A export ATP-binding/permease protein MsbA	IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport)
Niben101Scf01005g01002.1	sp|O42993|FKBP_SCHPO	***-	Peptidyl-prolyl cis-trans isomerase	IPR001179 (Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain), IPR023566 (Peptidyl-prolyl cis-trans isomerase, FKBP-type)	GO:0006457 (protein folding)
Niben101Scf01933g01001.1	sp|Q564G7|GMGT1_CYATE	***-	Galactomannan galactosyltransferase 1	IPR008630 (Galactosyl transferase)	GO:0016021 (integral component of membrane), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf19271g00007.1	ref|XP_003588355.1|	*-*-	Mitochondrial protein, putative [Medicago truncatula]		
Niben101Scf07440g01016.1	gb|AIU49228.1|	*-*-	ARC6, partial [Arabidopsis thaliana]	IPR025344 (Domain of unknown function DUF4101)	
Niben101Scf07783g01014.1	sp|Q5JIR7|RRP42_THEKO	***-	Exosome complex component Rrp42	IPR015847 (Exoribonuclease, phosphorolytic domain 2), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027408 (PNPase/RNase PH domain)	
Niben101Scf00611g10002.1	gb|ABA98502.1|	*-*-	transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]	IPR007527 (Zinc finger, SWIM-type)	GO:0008270 (zinc ion binding)
Niben101Scf15419g01002.1	gb|KEH18342.1|	*-*-	transmembrane protein, putative [Medicago truncatula]		
Niben101Scf02621g05001.1	sp|O08863|BIRC3_MOUSE	*-*-	Baculoviral IAP repeat-containing protein 3		
Niben101Scf00167g01002.1			Unknown protein		
Niben101Scf06221g04022.1			Unknown protein		
Niben101Ctg16123g00002.1	ref|XP_003626920.1|	****	GRF zinc finger containing protein [Medicago truncatula]	IPR010666 (Zinc finger, GRF-type)	GO:0008270 (zinc ion binding)
Niben101Scf02556g00002.1	AT2G42005.1	*-*-	Transmembrane amino acid transporter family protein LENGTH=413	IPR013057 (Amino acid transporter, transmembrane)	
Niben101Scf00736g04011.1	sp|Q6LXE7|RS3_METMP	****	30S ribosomal protein S3	IPR005703 (Ribosomal protein S3, eukaryotic/archaeal), IPR015946 (K homology domain-like, alpha/beta)	GO:0003723 (RNA binding), GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation), GO:0015935 (small ribosomal subunit)
Niben101Scf05201g02021.1	gb|AAQ09994.1|	*-*-	S2 self-incompatibility locus-linked pollen 3.2 protein [Petunia integrifolia subsp. inflata]		
Niben101Scf09082g00015.1	sp|P14029|RL5_METVA	*-*-	50S ribosomal protein L5	IPR002132 (Ribosomal protein L5), IPR022803 (Ribosomal protein L5 domain)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf01550g01002.1	sp|C7M0M0|FTSH_ACIFD	*-*-	ATP-dependent zinc metalloprotease FtsH	IPR025753 (AAA-type ATPase, N-terminal domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	
Niben101Scf06932g00019.1	sp|A0A352|PSBE_COFAR	***-	Cytochrome b559 subunit alpha	IPR006217 (Photosystem II cytochrome b559, alpha subunit)	GO:0009523 (photosystem II), GO:0009767 (photosynthetic electron transport chain), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane), GO:0019684 (photosynthesis, light reaction), GO:0020037 (heme binding), GO:0046872 (metal ion binding)
Niben101Scf15496g02015.1	AT4G17010.1	***-	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). LENGTH=160		
Niben101Scf00548g00003.1	sp|Q9LYZ4|FBL79_ARATH	*-*-	F-box/LRR-repeat protein	IPR001810 (F-box domain)	GO:0005515 (protein binding)
Niben101Scf12541g00008.1	ref|XP_002523549.1|	***-	conserved hypothetical protein [Ricinus communis] gb|EEF38888.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf01189g00001.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain), IPR018392 (LysM domain)	GO:0004672 (protein kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf00016g02001.1	emb|CDX72851.1|	***-	BnaC06g32990D [Brassica napus]		
Niben101Scf00028g01004.1	sp|Q55721|FBT_SYNY3	*-*-	Folate-biopterin transporter	IPR004324 (Folate-biopterin transporter), IPR020846 (Major facilitator superfamily domain)	GO:0006810 (transport), GO:0016021 (integral component of membrane)
Niben101Scf00328g05002.1	ref|XP_003597012.1|	*-*-	TdcA1-ORF2 protein [Medicago truncatula]	IPR004252 (Probable transposase, Ptta/En/Spm, plant)	
Niben101Scf00875g08011.1	sp|Q04739|GAL83_YEAST	*-*-	SNF1 protein kinase subunit beta-3	IPR006828 (Association with the SNF1 complex (ASC) domain)	GO:0005515 (protein binding)
Niben101Scf06909g04002.1	gb|AAA84891.1|	*-**	non-green plastid inner envelope membrane protein precursor [Brassica oleracea var. botrytis] emb|CDX91477.1| BnaC04g06730D [Brassica napus]	IPR005349 (Uncharacterised protein family UPF0136, Transmembrane)	GO:0016020 (membrane)
Niben101Scf01633g00035.1	sp|P49177|GBB_ARATH	*-**	Guanine nucleotide-binding protein subunit beta	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR022052 (Histone-binding protein RBBP4, N-terminal)	GO:0005515 (protein binding)
Niben101Scf03143g11004.1	gb|KEH20772.1|	***-	lysine ketoglutarate reductase trans-splicing protein [Medicago truncatula]	IPR007877 (Protein of unknown function DUF707)	
Niben101Scf00530g11015.1	gb|KEH40304.1|	****	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]	IPR025287 (Wall-associated receptor kinase galacturonan-binding domain)	GO:0030247 (polysaccharide binding)
Niben101Scf00912g04004.1	sp|P49215|RS17_SOLLC	***-	40S ribosomal protein S17	IPR001210 (Ribosomal protein S17e)	GO:0003735 (structural constituent of ribosome), GO:0005622 (intracellular), GO:0005840 (ribosome), GO:0006412 (translation)
Niben101Scf05682g00008.1	AT1G19240.1	*-*-	unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). LENGTH=104		
Niben101Ctg14623g00001.1	AT5G04895.1	*-*-	DEA(D/H)-box RNA helicase family protein LENGTH=1161		
Niben101Scf00180g05014.1			Unknown protein		
Niben101Scf01444g02012.1	sp|P51566|AFC1_ARATH	*-*-	Serine/threonine-protein kinase AFC1		
Niben101Scf03150g03006.1			Unknown protein		
Niben101Scf10732g01021.1	gb|AIF76113.1|	****	cytochrome c biogenesis B, partial (mitochondrion) [Halodule pinifolia]	IPR003544 (Cytochrome c-type biogenesis protein CcmB)	GO:0015232 (heme transporter activity), GO:0015886 (heme transport), GO:0016020 (membrane), GO:0017004 (cytochrome complex assembly)
Niben101Scf12983g00003.1	sp|Q9SJE2|FATB_ARATH	*-*-	Palmitoyl-acyl carrier protein thioesterase, chloroplastic	IPR002864 (Acyl-ACP thioesterase), IPR029069 (HotDog domain)	GO:0006633 (fatty acid biosynthetic process), GO:0016790 (thiolester hydrolase activity)
Niben101Scf07736g03001.1	sp|Q9ZRT5|GSTT1_ARATH	***-	Glutathione S-transferase T1	IPR010987 (Glutathione S-transferase, C-terminal-like), IPR012336 (Thioredoxin-like fold)	GO:0005515 (protein binding)
Niben101Scf00675g01001.1			Unknown protein		
Niben101Scf04403g01005.1	gb|AAS91798.1|	*-**	Ulp1-like peptidase [Cucumis melo] gb|AAU04774.1| Ulp1 peptidase-like [Cucumis melo]	IPR003653 (Peptidase C48, SUMO/Sentrin/Ubl1)	GO:0006508 (proteolysis), GO:0008234 (cysteine-type peptidase activity)
Niben101Scf03254g11012.1	AT5G55850.2	*-*-	RPM1-interacting protein 4 (RIN4) family protein LENGTH=130	IPR008700 (Pathogenic type III effector avirulence factor Avr cleavage site)	
Niben101Scf15817g00005.1	sp|A4QK29|YCF4_ARAHI	*-**	Photosystem I assembly protein Ycf4	IPR003359 (Photosystem I Ycf4, assembly)	GO:0009522 (photosystem I), GO:0009579 (thylakoid), GO:0015979 (photosynthesis), GO:0016021 (integral component of membrane)
Niben101Scf00576g02010.1	sp|Q9FN94|RLK7_ARATH	*-**	Receptor-like protein kinase	IPR011009 (Protein kinase-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain)	GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups)
Niben101Scf01639g08014.1	sp|P0C872|JMJD7_MOUSE	***-	JmjC domain-containing protein 7	IPR003347 (JmjC domain)	
Niben101Scf00589g02008.1	sp|Q6Z6W2|MAD57_ORYSJ	*-*-	MADS-box transcription factor 57	IPR002100 (Transcription factor, MADS-box)	GO:0003677 (DNA binding), GO:0046983 (protein dimerization activity)
Niben101Scf05720g03014.1	AT5G52580.2	***-	RabGAP/TBC domain-containing protein LENGTH=690	IPR021935 (Domain of unknown function DUF3548)	
Niben101Scf14083g01010.1	gb|KEH31585.1|	***-	electron carrier/iron ion-binding protein, putative [Medicago truncatula]	IPR007818 (Protein of unknown function DUF702)	
Niben101Scf02807g02003.1	AT3G21760.1	***-	UDP-Glycosyltransferase superfamily protein LENGTH=485	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02944g01017.1	sp|Q9M907|PP217_ARATH	***-	Pentatricopeptide repeat-containing protein	IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain)	GO:0005515 (protein binding)
Niben101Scf03971g02017.1	sp|P24712|INVO_SAGOE	--*-	Involucrin		
Niben101Scf01198g02006.1	sp|Q4KM86|GGACT_RAT	*-*-	Gamma-glutamylaminecyclotransferase	IPR013024 (Butirosin biosynthesis, BtrG-like)	
Niben101Ctg10362g00004.1	emb|CDX83187.1|	***-	BnaA03g23190D [Brassica napus]		
Niben101Scf01191g06014.1	sp|A2AED3|FNDC7_MOUSE	--*-	Fibronectin type III domain-containing protein 7		
Niben101Scf01634g01005.1	sp|Q6CJI0|SLT11_KLULA	*-*-	Pre-mRNA-splicing factor SLT11	IPR000571 (Zinc finger, CCCH-type), IPR012677 (Nucleotide-binding alpha-beta plait domain)	GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0046872 (metal ion binding)
Niben101Scf03436g01017.1	sp|P81370|TLP_ACTDE	***-	Thaumatin-like protein	IPR001938 (Thaumatin)	
Niben101Scf01563g00013.1	sp|Q8LFM2|GASAA_ARATH	***-	Gibberellin-regulated protein 10	IPR003854 (Gibberellin regulated protein)	
Niben101Scf00494g02013.1	sp|Q9SKD3|OXA1L_ARATH	*-*-	Mitochondrial inner membrane protein OXA1-like		
Niben101Scf01494g02023.1	AT1G10530.1	***-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=166	IPR025322 (Protein of unknown function DUF4228, plant)	
Niben101Scf03203g04003.1	sp|Q9C7B1|TRP3_ARATH	****	Telomere repeat-binding protein 3	IPR009057 (Homeodomain-like), IPR029071 (Ubiquitin-related domain)	GO:0003677 (DNA binding), GO:0003682 (chromatin binding), GO:0005515 (protein binding)
Niben101Scf02335g02008.1	ref|XP_007042981.1|	***-	Dentin sialoph -related, putative isoform 5 [Theobroma cacao]		
Niben101Scf00420g01001.1	sp|Q92616|GCN1L_HUMAN	*-*-	Translational activator GCN1	IPR016024 (Armadillo-type fold), IPR026827 (Proteasome component ECM29/Translational activator GCN1)	GO:0005488 (binding)
Niben101Scf08706g02027.1	sp|O02467|ASPG_SPOFR	***-	N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase	IPR000246 (Peptidase T2, asparaginase 2), IPR029055 (Nucleophile aminohydrolases, N-terminal)	GO:0016787 (hydrolase activity)
Niben101Scf10516g00008.1	gb|AAU90302.2|	*-*-	Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum]	IPR015410 (Domain of unknown function DUF1985)	
Niben101Scf05250g02003.1	emb|CDX99501.1|	*-*-	BnaC09g24910D [Brassica napus]	IPR008502 (Prolamin-like domain)	
Niben101Scf03659g03002.1	AT5G07990.1	***-	Cytochrome P450 superfamily protein LENGTH=513	IPR001128 (Cytochrome P450)	GO:0005506 (iron ion binding), GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen), GO:0020037 (heme binding), GO:0055114 (oxidation-reduction process)
Niben101Scf09847g00014.1	sp|P49297|ACEA_SOLLC	*-**	Isocitrate lyase	IPR006254 (Isocitrate lyase)	GO:0003824 (catalytic activity), GO:0004451 (isocitrate lyase activity), GO:0019752 (carboxylic acid metabolic process)
Niben101Scf00817g00002.1	sp|Q9FZ87|GH317_ARATH	*-*-	Indole-3-acetic acid-amido synthetase GH3.17	IPR004993 (GH3 auxin-responsive promoter)	
Niben101Scf08467g03009.1	emb|CDY70616.1|	***-	BnaA03g54770D [Brassica napus]		
Niben101Scf04528g00002.1	sp|O24160|TGA21_TOBAC	*-**	TGACG-sequence-specific DNA-binding protein TGA-2.1	IPR025422 (Transcription factor TGA like domain)	GO:0006351 (transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding)
Niben101Scf11444g00004.1	AT1G79790.1	***-	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=245	IPR023214 (HAD-like domain)	
Niben101Scf10344g00006.1	AT2G45850.1	*-**	AT hook motif DNA-binding family protein LENGTH=348	IPR005175 (Domain of unknown function DUF296), IPR017956 (AT hook, DNA-binding motif)	GO:0003677 (DNA binding)
Niben101Scf06387g01019.1	sp|Q0VFE3|PGAP3_XENTR	*-*-	Post-GPI attachment to proteins factor 3	IPR007217 (Per1-like)	
Niben101Scf01453g07008.1	sp|Q2RLE0|HPPA2_MOOTA	****	K(+)-insensitive pyrophosphate-energized proton pump	IPR004131 (Pyrophosphate-energised proton pump)	GO:0004427 (inorganic diphosphatase activity), GO:0009678 (hydrogen-translocating pyrophosphatase activity), GO:0015992 (proton transport), GO:0016020 (membrane)
Niben101Scf01697g17003.1	AT4G17960.1	***-	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein . LENGTH=154		
Niben101Scf12361g02006.1	sp|Q5ZC82|LOG_ORYSJ	***-	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG	IPR005269 (Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG)	
Niben101Scf00297g00003.1	AT5G64500.1	***-	Major facilitator superfamily protein LENGTH=484	IPR011701 (Major facilitator superfamily), IPR020846 (Major facilitator superfamily domain)	GO:0016021 (integral component of membrane), GO:0055085 (transmembrane transport)
Niben101Scf05438g03003.1	sp|B7HHH6|CYSH_BACC4	****	Phosphoadenosine phosphosulfate reductase	IPR004508 (Thioredoxin-independent 5'-adenylylsulphate reductase), IPR012336 (Thioredoxin-like fold)	GO:0003824 (catalytic activity), GO:0008152 (metabolic process), GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor), GO:0019419 (sulfate reduction), GO:0045454 (cell redox homeostasis), GO:0055114 (oxidation-reduction process)
Niben101Scf07882g00001.1	sp|O48540|MAN1_SOLLC	***-	Mannan endo-1,4-beta-mannosidase 1	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf04404g03001.1	AT2G36770.1	*-*-	UDP-Glycosyltransferase superfamily protein LENGTH=496	IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)	GO:0008152 (metabolic process), GO:0016758 (transferase activity, transferring hexosyl groups)
Niben101Scf02459g04009.1	sp|Q9FZ03|MAN2_SOLLC	***-	Mannan endo-1,4-beta-mannosidase 2	IPR017853 (Glycoside hydrolase superfamily)	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process)
Niben101Scf16105g00005.1	ref|XP_002515467.1|	-**-	conserved hypothetical protein [Ricinus communis] gb|EEF46916.1| conserved hypothetical protein [Ricinus communis]		
Niben101Scf03154g05002.1	sp|O65351|SUBL_ARATH	*-*-	Subtilisin-like protease	IPR015500 (Peptidase S8, subtilisin-related)	GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis)
Niben101Scf04033g02018.1	sp|Q9T048|DRL27_ARATH	--*-	Disease resistance protein	IPR002182 (NB-ARC), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)	GO:0043531 (ADP binding)
Niben101Scf12568g00006.1	sp|Q8GZD4|NAT3_ARATH	****	Nucleobase-ascorbate transporter 3	IPR006043 (Xanthine/uracil/vitamin C permease)	GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane), GO:0055085 (transmembrane transport)
Niben101Scf07184g05020.1			Unknown protein		
Niben101Scf21026g00010.1	sp|Q9FHZ1|SCL23_ARATH	*-*-	Scarecrow-like protein 23	IPR005202 (Transcription factor GRAS)	
Niben101Scf02429g02004.1	AT1G77670.1	****	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein LENGTH=440	IPR015424 (Pyridoxal phosphate-dependent transferase)	GO:0003824 (catalytic activity), GO:0009058 (biosynthetic process), GO:0030170 (pyridoxal phosphate binding)
Niben101Scf03584g05006.1	sp|Q8GYX0|MOB1_ARATH	***-	MOB kinase activator-like 1	IPR005301 (Mob1/phocein)	
Niben101Ctg07414g00002.1	AT2G22800.1	***-	Homeobox-leucine zipper protein family LENGTH=274		
Niben101Scf02513g00012.1	sp|Q8W4F0|DAR1_ARATH	***-	Protein DA1-related 1	IPR022087 (Protein DA1 like)	
Niben101Scf01328g01001.1	AT2G33180.1	*-*-	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57 proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). LENGTH=166		
Niben101Scf07413g05007.1	gb|AAU95252.1|	*-*-	R1 [Solanum tuberosum]	IPR021929 (Late blight resistance protein R1)	
Niben101Scf07255g01015.1	sp|Q8VZ37|AP3S_ARATH	****	AP-3 complex subunit sigma	IPR016635 (Adaptor protein complex, sigma subunit)	GO:0006810 (transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0030123 (AP-3 adaptor complex)
Niben101Scf06117g01017.1	sp|Q91YR7|PRP6_MOUSE	****	Pre-mRNA-processing factor 6	IPR010491 (PRP1 splicing factor, N-terminal), IPR011990 (Tetratricopeptide-like helical domain), IPR027108 (Pre-mRNA-processing factor 6/Prp1/STA1)	GO:0000398 (mRNA splicing, via spliceosome), GO:0005515 (protein binding), GO:0005622 (intracellular), GO:0005634 (nucleus), GO:0006396 (RNA processing)
Niben101Scf09343g01016.1	sp|Q9H6U6|BCAS3_HUMAN	*-*-	Breast carcinoma-amplified sequence 3	IPR015943 (WD40/YVTN repeat-like-containing domain), IPR022175 (Breast carcinoma amplified sequence 3)	GO:0005515 (protein binding)
Niben101Scf06280g05007.1			Unknown protein